1182 114 17 0 chr1 6417 6593 -242657760 + AluJb SINE Alu 3 181 -131 2352 97 3 0 chr1 12398 12708 -242651645 + AluSq SINE Alu 2 312 -1 2236 68 4 0 chr1 12859 13138 -242651215 - AluY SINE Alu -31 280 1 606 258 76 28 chr1 14055 14409 -242649944 - MLT1B LTR MaLR 0 374 18 238 203 7 115 chr1 18686 18834 -242645519 + (ACCTG)n Simple_repeat Simple_repeat 2 133 0 183 213 197 8 chr1 20331 20453 -242643900 - L2 LINE L2 -1168 2146 2002 921 103 7 13 chr1 25333 25488 -242638865 + pTR5 LTR ERV1 239 392 -2046 403 71 36 0 chr1 25488 25544 -242638809 + Alu SINE Alu 235 292 -17 1763 127 0 4 chr1 25554 25687 -242638666 + AluSx SINE Alu 1 134 -178 1851 122 48 7 chr1 25687 25981 -242638372 + AluSg SINE Alu 5 310 0 1763 127 0 4 chr1 25981 26107 -242638246 + AluSx SINE Alu 134 259 -53 1012 110 0 0 chr1 26162 26298 -242638055 + AluSq/x SINE Alu 1 136 -177 2100 114 0 13 chr1 26298 26597 -242637756 + AluSg SINE Alu 1 295 -15 2493 33 0 16 chr1 26600 26903 -242637450 + AluY SINE Alu 4 301 -10 1688 149 23 13 chr1 28600 28901 -242635452 - AluJo SINE Alu -7 305 2 855 176 7 7 chr1 29844 29997 -242634356 - FRAM SINE Alu -13 153 1 539 241 134 19 chr1 30326 30542 -242633811 + L1MC/D LINE L1 5500 5740 -502 1948 101 39 26 chr1 30619 30927 -242633426 + AluSx SINE Alu 1 312 0 186 232 130 29 chr1 32943 33012 -242631341 - MIR SINE MIR -80 182 107 208 264 9 36 chr1 33810 33920 -242630433 + (CCCG)n Simple_repeat Simple_repeat 2 108 0 23 78 0 0 chr1 34237 34288 -242630065 + GC_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr1 34353 34378 -242629975 + GC_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr1 35514 35560 -242628793 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 35811 35832 -242628521 + GC_rich Low_complexity Low_complexity 1 21 0 2468 87 0 0 chr1 38404 38715 -242625638 - AluSx SINE Alu -1 311 1 293 67 0 0 chr1 38760 38805 -242625548 + AluSp/q SINE Alu 198 242 -61 200 161 0 0 chr1 39198 39229 -242625124 + G-rich Low_complexity Low_complexity 4 34 0 895 76 111 47 chr1 39284 39456 -242624897 - MER30 DNA MER1_type -47 183 1 21 36 0 0 chr1 39718 39746 -242624607 + GC_rich Low_complexity Low_complexity 1 28 0 185 108 27 0 chr1 46920 46957 -242617396 + C-rich Low_complexity Low_complexity 3 40 0 280 245 7 7 chr1 47291 47430 -242616923 + (TG)n Simple_repeat Simple_repeat 1 139 0 298 290 21 0 chr1 47441 47534 -242616819 + (CGTG)n Simple_repeat Simple_repeat 3 97 0 309 221 11 33 chr1 47547 47728 -242616625 + (TG)n Simple_repeat Simple_repeat 1 177 0 1865 137 0 7 chr1 47995 48280 -242616073 + AluJo SINE Alu 5 287 -25 2276 96 0 0 chr1 48439 48740 -242615613 + AluSx SINE Alu 3 303 -9 267 225 50 88 chr1 49561 49761 -242614592 - L1M4 LINE L1 -3733 2413 2222 2107 96 4 0 chr1 49766 50087 -242614266 - AluSq SINE Alu 0 322 1 228 279 0 0 chr1 50399 50460 -242613893 + C-rich Low_complexity Low_complexity 5 65 0 1251 106 28 0 chr1 52200 52380 -242611973 + AluSg/x SINE Alu 115 299 -13 544 181 0 53 chr1 52396 52529 -242611824 + L1M4 LINE L1 4735 4860 -1286 2275 84 3 0 chr1 55166 55462 -242608891 + AluSg SINE Alu 3 299 -11 209 329 85 0 chr1 55973 56055 -242608298 - MIR SINE MIR -20 242 154 611 204 0 0 chr1 57324 57500 -242606853 + (TG)n Simple_repeat Simple_repeat 1 176 0 273 254 0 0 chr1 57511 57641 -242606712 + (TG)n Simple_repeat Simple_repeat 2 131 0 2154 100 0 0 chr1 57643 57924 -242606429 - AluY SINE Alu -16 295 15 231 148 19 0 chr1 58191 58245 -242606108 + L1MD3 LINE L1 7939 7993 -2 270 315 0 18 chr1 60486 60597 -242603756 + (CCCCG)n Simple_repeat Simple_repeat 2 110 0 236 152 22 0 chr1 62055 62101 -242602252 - MLT1C LTR MaLR -368 99 53 282 270 0 0 chr1 64422 64600 -242599753 + GA-rich Low_complexity Low_complexity 3 180 0 180 281 0 0 chr1 64613 64752 -242599601 + GA-rich Low_complexity Low_complexity 2 140 0 195 100 0 0 chr1 65341 65371 -242598982 + (CGGGG)n Simple_repeat Simple_repeat 1 30 0 2205 97 3 3 chr1 69632 69940 -242594413 - AluSg SINE Alu -2 308 1 488 206 6 24 chr1 74391 74561 -242589792 + C-rich Low_complexity Low_complexity 3 169 0 1999 125 16 0 chr1 77432 77736 -242586617 - AluSx SINE Alu -3 309 1 1392 162 4 4 chr1 77771 78000 -242586353 + AluJo SINE Alu 1 229 -83 2099 89 0 20 chr1 79433 79725 -242584628 - AluSx SINE Alu -17 295 10 183 351 18 0 chr1 83996 84053 -242580300 + L2 LINE L2 3250 3307 -6 2086 108 10 0 chr1 84821 85117 -242579236 + AluSx SINE Alu 1 299 -13 293 204 157 0 chr1 85165 85260 -242579093 + MLT1B LTR MaLR 3 104 -270 29 0 0 0 chr1 87737 87766 -242576587 + GC_rich Low_complexity Low_complexity 1 29 0 597 200 0 0 chr1 91227 91337 -242573016 + FLAM_C SINE Alu 1 110 -33 730 206 32 74 chr1 91530 91719 -242572634 + AluJb SINE Alu 4 184 -128 572 141 16 55 chr1 91797 91925 -242572428 + AluJb SINE Alu 189 311 -1 1398 213 45 0 chr1 91933 92220 -242572133 + AluJb SINE Alu 1 300 -12 337 222 7 37 chr1 93180 93457 -242570896 + (CA)n Simple_repeat Simple_repeat 1 268 0 2455 35 6 19 chr1 96328 96639 -242567714 + AluY SINE Alu 1 307 -4 768 287 0 0 chr1 97228 97364 -242566989 + C-rich Low_complexity Low_complexity 1 136 0 374 328 112 11 chr1 97368 97670 -242566683 - L1MCa LINE L1 -1205 1582 1338 2001 42 0 0 chr1 97770 98009 -242566344 + AluY SINE Alu 62 300 -11 2427 197 92 87 chr1 98009 98296 -242566057 - L1M4 LINE L1 -2744 3900 3616 1621 126 0 8 chr1 98296 98534 -242565819 - AluSg/x SINE Alu -2 310 75 2427 197 92 87 chr1 98534 98694 -242565659 - L1M4 LINE L1 -3028 3616 3458 2137 92 33 13 chr1 98694 98998 -242565355 - AluSq SINE Alu -3 310 1 2427 197 92 87 chr1 98998 99193 -242565160 - L1M4 LINE L1 -3186 3458 3266 764 206 0 0 chr1 99193 99319 -242565034 + FLAM_A SINE Alu 5 130 -3 2427 197 92 87 chr1 99319 99473 -242564880 - L1M4 LINE L1 -3378 3266 3114 3765 103 4 10 chr1 99473 99987 -242564366 - MER9 LTR ERVK 0 511 1 2427 197 92 87 chr1 99987 100262 -242564091 - L1M4 LINE L1 -3530 3114 2820 1895 250 95 75 chr1 100720 100923 -242563430 - L1M4 LINE L1 -3800 2844 2646 2297 83 3 0 chr1 100923 101224 -242563129 + AluY SINE Alu 1 302 -9 1895 250 95 75 chr1 101224 101576 -242562777 - L1M4 LINE L1 -3998 2646 2302 1506 208 17 10 chr1 101576 101864 -242562489 + AluJb SINE Alu 5 294 -18 1895 250 95 75 chr1 101864 102679 -242561674 - L1M4 LINE L1 -4342 2302 1439 1654 164 30 10 chr1 102679 102983 -242561370 - AluSx SINE Alu -2 310 1 1895 250 95 75 chr1 102983 103197 -242561156 - L1M4 LINE L1 -5205 1439 1231 278 106 0 0 chr1 103203 103250 -242561103 - AluSq/x SINE Alu -169 133 87 1249 173 4 27 chr1 103251 103341 -242561012 - AluJo SINE Alu -92 220 130 1775 158 10 7 chr1 103341 103632 -242560721 - AluJo SINE Alu -20 292 1 1249 173 4 27 chr1 103632 103766 -242560587 - AluJo SINE Alu -182 130 1 404 292 134 38 chr1 103781 103990 -242560363 - L1M4 LINE L1 -6148 394 166 243 261 159 23 chr1 104032 104120 -242560233 + L2 LINE L2 3210 3309 -4 208 232 0 71 chr1 104978 105090 -242559263 + C-rich Low_complexity Low_complexity 1 104 0 24 32 0 0 chr1 105516 105547 -242558806 + GC_rich Low_complexity Low_complexity 1 31 0 2141 114 3 0 chr1 108826 109123 -242555230 - AluSx SINE Alu -14 298 1 1568 193 10 10 chr1 109174 109475 -242554878 + AluJb SINE Alu 1 301 -11 301 226 71 0 chr1 109723 109807 -242554546 + MSTD LTR MaLR 16 105 -291 225 198 79 8 chr1 110228 110354 -242553999 + (CA)n Simple_repeat Simple_repeat 1 135 0 267 309 65 22 chr1 110635 110774 -242553579 + L1MC3 LINE L1 6705 6849 -936 629 257 27 9 chr1 110900 111122 -242553231 + L1MC3 LINE L1 7320 7545 -240 217 320 0 29 chr1 111836 112008 -242552345 + (CGGG)n Simple_repeat Simple_repeat 3 169 0 1604 134 12 78 chr1 113740 114061 -242550292 - AluJo SINE Alu -12 300 1 202 382 34 0 chr1 114245 114334 -242550019 + MIR SINE MIR 53 144 -118 248 243 14 14 chr1 114417 114491 -242549862 + (CA)n Simple_repeat Simple_repeat 1 74 0 217 306 12 35 chr1 114590 114675 -242549678 + L2 LINE L2 2320 2402 -912 268 234 52 39 chr1 114767 114844 -242549509 + L2 LINE L2 3179 3256 -16 2051 115 10 0 chr1 115012 115307 -242549046 - AluSx SINE Alu -14 298 1 307 163 9 9 chr1 115544 115626 -242548727 + FLAM SINE Alu 58 133 0 366 266 93 103 chr1 118912 119224 -242545129 + HAL1 LINE L1 985 1293 -1214 460 237 171 13 chr1 124001 124229 -242540124 - MLT1C LTR MaLR -203 264 1 221 292 62 31 chr1 125208 125304 -242539049 + MIR SINE MIR 34 132 -76 1473 154 67 4 chr1 128184 128451 -242535902 + AluJb SINE Alu 2 285 -27 1752 161 0 32 chr1 128476 128562 -242535791 - AluJb SINE Alu -11 301 214 6627 102 25 13 chr1 128562 129504 -242534849 - LTR13 LTR ERVK 0 954 1 1752 161 0 32 chr1 129504 129728 -242534625 - AluJb SINE Alu -98 214 1 638 89 0 30 chr1 129739 129840 -242534513 - AluSg/x SINE Alu -14 298 201 270 284 60 17 chr1 130365 130481 -242533872 + L2 LINE L2 2490 2610 -704 376 289 12 36 chr1 130650 130816 -242533537 + (CGTG)n Simple_repeat Simple_repeat 4 165 0 291 313 0 87 chr1 130830 131025 -242533328 + (CGTG)n Simple_repeat Simple_repeat 1 178 0 794 218 45 1 chr1 131185 131547 -242532806 - MER54A LTR ERVL -6 895 489 256 289 41 41 chr1 132699 132820 -242531533 - L2 LINE L2 -1315 1999 1879 1464 90 24 14 chr1 133307 133519 -242530834 - AluY SINE Alu -30 281 68 2190 83 4 0 chr1 133519 133795 -242530558 - AluSp SINE Alu -36 277 1 1624 168 11 0 chr1 135372 135640 -242528713 + AluJo SINE Alu 23 293 -19 1037 110 0 0 chr1 136128 136264 -242528089 + AluSq/x SINE Alu 1 136 -177 1983 116 0 0 chr1 136264 136531 -242527822 + AluSx SINE Alu 1 267 -45 590 184 34 101 chr1 136945 137152 -242527201 + MER68 LTR ERV1 159 351 -211 547 67 22 0 chr1 137203 137292 -242527061 + (TG)n Simple_repeat Simple_repeat 1 91 0 2027 97 0 25 chr1 137294 137573 -242526780 - AluSc SINE Alu -35 274 3 856 96 0 3 chr1 137952 138182 -242526171 + AluSx SINE Alu 1 294 -16 2214 80 7 20 chr1 138182 138482 -242525871 + AluY SINE Alu 1 296 -15 2255 81 0 0 chr1 138523 138831 -242525522 - AluSq SINE Alu 0 308 1 1531 163 78 0 chr1 140338 140608 -242523745 - AluJb SINE Alu -10 302 12 2212 98 0 13 chr1 141100 141406 -242522947 - AluSq SINE Alu -11 302 1 2045 155 50 11 chr1 141532 141893 -242522460 + THE1C LTR MaLR 1 375 0 983 162 29 17 chr1 143320 143335 -242521018 + AluSq SINE Alu 121 134 -179 2341 99 3 0 chr1 143335 143647 -242520706 + AluSp SINE Alu 1 313 0 983 162 29 17 chr1 143647 143804 -242520549 + AluSq SINE Alu 134 295 -18 30 0 0 0 chr1 145164 145194 -242519159 + GC_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr1 145624 145646 -242518707 + GC_rich Low_complexity Low_complexity 1 22 0 2513 162 109 17 chr1 147355 147898 -242516455 - MER4B LTR ERV1 -17 593 1 1263 164 9 0 chr1 147898 148124 -242516229 - MER4B-int LTR ERV1 0 6758 6531 2097 117 3 0 chr1 148127 148417 -242515936 - AluSx SINE Alu -18 294 4 2504 166 68 79 chr1 148421 148769 -242515584 - MER4B-int LTR ERV1 -4502 2256 1906 2108 119 0 3 chr1 148769 149064 -242515289 - AluSx SINE Alu -18 294 1 2504 166 68 79 chr1 149064 149191 -242515162 - MER4B-int LTR ERV1 -4852 1906 1779 2361 58 0 3 chr1 149191 149486 -242514867 + AluY SINE Alu 1 294 -17 2504 166 68 79 chr1 149486 149769 -242514584 - MER4B-int LTR ERV1 -4979 1779 1494 2021 139 0 0 chr1 149769 150064 -242514289 + AluSx SINE Alu 1 295 -17 2504 166 68 79 chr1 150064 150131 -242514222 - MER4B-int LTR ERV1 -5264 1494 1428 2204 112 0 0 chr1 150131 150435 -242513918 - AluSq SINE Alu -9 304 1 2504 166 68 79 chr1 150435 150733 -242513620 - MER4B-int LTR ERV1 -5330 1428 698 2551 152 14 42 chr1 150836 151043 -242513310 - MER4B-int LTR ERV1 -6035 723 512 2515 50 0 0 chr1 151043 151343 -242513010 - AluY SINE Alu -10 301 2 2551 152 14 42 chr1 151343 151635 -242512718 - MER4B-int LTR ERV1 -6246 512 238 1010 80 0 29 chr1 151687 151825 -242512528 + AluSc SINE Alu 1 134 -175 2427 57 7 0 chr1 151825 152125 -242512228 + AluY SINE Alu 1 302 -9 1517 163 62 0 chr1 152125 152431 -242511922 - MER4B LTR ERV1 -283 327 3 298 257 86 9 chr1 153795 153900 -242510453 - MIR SINE MIR -117 145 33 2448 57 0 0 chr1 154395 154692 -242509661 - AluY SINE Alu -12 299 3 2157 119 3 0 chr1 155059 155362 -242508991 + AluSp SINE Alu 1 304 -9 180 77 0 0 chr1 157330 157356 -242506997 + (CCA)n Simple_repeat Simple_repeat 2 27 0 207 122 58 70 chr1 159580 159752 -242504601 + (TCTCTG)n Simple_repeat Simple_repeat 1 170 0 280 125 56 56 chr1 159800 160125 -242504228 + (TCTCTG)n Simple_repeat Simple_repeat 1 325 0 279 116 52 64 chr1 160182 160354 -242503999 + (TCTCTG)n Simple_repeat Simple_repeat 1 170 0 276 325 0 38 chr1 160354 160511 -242503842 + C-rich Low_complexity Low_complexity 5 155 0 202 183 0 84 chr1 163965 164036 -242500317 + C-rich Low_complexity Low_complexity 4 68 0 213 65 0 0 chr1 164205 164236 -242500117 + (CGGGG)n Simple_repeat Simple_repeat 4 34 0 211 235 12 37 chr1 164248 164329 -242500024 + (CGGGG)n Simple_repeat Simple_repeat 1 79 0 264 325 26 13 chr1 166996 167147 -242497206 + (CACG)n Simple_repeat Simple_repeat 4 156 0 2133 103 17 0 chr1 171008 171310 -242493043 - AluSp SINE Alu -6 307 1 976 161 0 40 chr1 171313 171487 -242492866 - AluJb SINE Alu -18 294 128 1652 148 36 26 chr1 171500 171803 -242492550 - AluJo SINE Alu -6 306 1 189 238 48 60 chr1 171938 172022 -242492331 + L2 LINE L2 2230 2312 -1002 212 329 12 0 chr1 176911 176996 -242487357 + (CA)n Simple_repeat Simple_repeat 1 86 0 27 0 0 0 chr1 177900 177927 -242486426 + GC_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr1 177986 178009 -242486344 + GC_rich Low_complexity Low_complexity 1 23 0 1797 91 0 4 chr1 178154 178396 -242485957 + AluSc SINE Alu 63 303 -6 457 258 24 0 chr1 178487 178611 -242485742 + MER66-int LTR ERV1 213 339 -6337 286 175 35 0 chr1 178756 178813 -242485540 - AluSp/q SINE Alu -5 298 240 1400 84 0 0 chr1 178814 178993 -242485360 - AluY SINE Alu -132 179 1 442 172 108 0 chr1 179027 179120 -242485233 - MER66B LTR ERV1 0 486 384 760 233 11 23 chr1 179120 179296 -242485057 - AluSq SINE Alu -3 310 137 1919 112 22 0 chr1 179311 179580 -242484773 - AluSx SINE Alu -37 275 1 445 298 45 20 chr1 179607 179805 -242484548 - MER66B LTR ERV1 -142 344 142 2040 94 43 0 chr1 182305 182582 -242481771 - AluSx SINE Alu -23 289 1 1350 164 98 0 chr1 182603 182716 -242481637 - AluJo SINE Alu -44 268 168 2559 38 0 22 chr1 182716 183034 -242481319 - AluY SINE Alu 0 311 1 1350 164 98 0 chr1 183034 183164 -242481189 - AluJo SINE Alu -144 168 1 312 61 41 0 chr1 183164 183213 -242481140 - AluJo SINE Alu -167 135 85 1599 120 43 0 chr1 183288 183522 -242480831 - AluSx SINE Alu -68 244 1 935 74 0 0 chr1 184039 184160 -242480193 + AluSg/x SINE Alu 182 302 -8 1732 122 26 51 chr1 184161 184473 -242479880 + AluSx SINE Alu 2 305 -7 353 231 136 0 chr1 184700 184869 -242479484 - MER63 DNA MER1_type -45 1017 826 240 265 0 15 chr1 184948 184991 -242479362 - AluJo SINE Alu -123 179 136 1895 128 0 52 chr1 184991 185297 -242479056 - AluSx SINE Alu -22 290 1 240 265 0 15 chr1 185297 185321 -242479032 - AluJo SINE Alu -166 136 113 2263 91 13 0 chr1 186636 186944 -242477409 - AluSx SINE Alu 0 312 1 2090 117 0 0 chr1 189639 189930 -242474423 - AluSx SINE Alu -21 291 1 414 142 142 19 chr1 190909 191015 -242473338 + MER20 DNA MER1_type 53 171 -48 2164 111 3 0 chr1 192073 192370 -242471983 - AluSg SINE Alu -12 298 1 309 243 70 119 chr1 192522 192548 -242471805 - HAL1 LINE L1 -2 2505 2479 2352 61 3 0 chr1 192548 192841 -242471512 + AluY SINE Alu 1 294 -17 309 243 70 119 chr1 192841 192886 -242471467 - HAL1 LINE L1 -28 2479 2433 1620 169 35 0 chr1 192886 193170 -242471183 + AluJo SINE Alu 4 297 -15 309 243 70 119 chr1 193170 193190 -242471163 - HAL1 LINE L1 -74 2433 2414 2162 88 10 7 chr1 193190 193485 -242470868 + AluY SINE Alu 1 296 -15 309 243 70 119 chr1 193485 193576 -242470777 - HAL1 LINE L1 -93 2414 2330 2239 97 3 0 chr1 193592 193890 -242470463 - AluSx SINE Alu -13 299 1 1628 149 57 7 chr1 193897 194179 -242470174 - AluJo SINE Alu -16 296 1 1018 157 17 0 chr1 194415 194593 -242469760 + AluJb SINE Alu 120 300 -12 2274 90 0 0 chr1 194593 194894 -242469459 + AluY SINE Alu 1 301 -10 255 261 85 24 chr1 194985 195150 -242469203 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 379 243 47 24 chr1 195171 195420 -242468933 + (CTCA)n Simple_repeat Simple_repeat 1 254 0 255 318 6 11 chr1 195450 195626 -242468727 + (CA)n Simple_repeat Simple_repeat 1 175 0 * 378 268 36 40 chr1 195528 195871 -242468482 + (CTCA)n Simple_repeat Simple_repeat 1 341 0 437 256 64 21 chr1 195948 196289 -242468064 + (CTCA)n Simple_repeat Simple_repeat 1 355 0 332 339 0 0 chr1 196226 196394 -242467959 + (CA)n Simple_repeat Simple_repeat 1 168 0 * 431 266 40 29 chr1 196336 196509 -242467844 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 285 204 57 45 chr1 196691 196767 -242467586 - AluJb SINE Alu -89 213 139 1621 155 13 44 chr1 196767 196948 -242467405 - AluJo SINE Alu -6 306 121 2158 113 7 0 chr1 196948 197258 -242467095 - AluSp SINE Alu -1 312 1 2145 105 16 3 chr1 197258 197563 -242466790 - AluSp SINE Alu -4 309 1 1988 128 0 3 chr1 197563 197844 -242466509 - AluSx SINE Alu -18 294 14 1621 155 13 44 chr1 197844 197976 -242466377 - AluJo SINE Alu -188 124 1 285 204 57 45 chr1 197976 197987 -242466366 - AluJb SINE Alu -163 139 125 1937 116 10 20 chr1 198282 198413 -242465940 + AluSq SINE Alu 4 135 -178 2360 88 0 0 chr1 198413 198709 -242465644 + AluSg SINE Alu 2 297 -13 2324 76 0 10 chr1 198709 199009 -242465344 + AluY SINE Alu 1 298 -13 1937 116 10 20 chr1 199009 199179 -242465174 + AluSq SINE Alu 133 303 -10 650 159 68 38 chr1 199180 199312 -242465041 + FRAM SINE Alu 9 144 -32 1393 128 0 0 chr1 199313 199509 -242464844 - AluSg/x SINE Alu -15 297 102 2258 94 0 3 chr1 199512 199809 -242464544 - AluSc SINE Alu -13 296 1 2300 96 0 3 chr1 199810 200113 -242464240 - AluSx SINE Alu -10 302 1 243 304 78 10 chr1 201219 201321 -242463032 + L2 LINE L2 3158 3266 -6 184 264 6 6 chr1 201380 201539 -242462814 + (TG)n Simple_repeat Simple_repeat 2 160 0 288 273 0 0 chr1 201584 201760 -242462593 + (TG)n Simple_repeat Simple_repeat 1 176 0 1029 211 127 24 chr1 204720 204794 -242459559 + MER54A LTR ERVL 489 554 -347 1857 128 10 14 chr1 204794 205084 -242459269 - AluSq SINE Alu -22 291 3 1029 211 127 24 chr1 205084 205378 -242458975 + MER54A LTR ERVL 554 895 -6 189 0 0 0 chr1 205966 205987 -242458366 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 190 324 14 0 chr1 207033 207107 -242457246 + MIR SINE MIR 56 130 -132 180 111 0 0 chr1 211606 211633 -242452720 + (TG)n Simple_repeat Simple_repeat 1 27 0 394 333 11 11 chr1 211706 211883 -242452470 + (TG)n Simple_repeat Simple_repeat 1 177 0 296 286 4 18 chr1 211940 212218 -242452135 + (TG)n Simple_repeat Simple_repeat 1 273 0 255 258 0 38 chr1 212223 212409 -242451944 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 201 188 0 80 chr1 215229 215341 -242449012 + (CTCCG)n Simple_repeat Simple_repeat 4 106 0 202 260 0 52 chr1 219359 219455 -242444898 + (CAGGG)n Simple_repeat Simple_repeat 5 95 0 1300 96 15 20 chr1 221545 221742 -242442611 + AluSg/x SINE Alu 110 305 -7 562 189 78 20 chr1 221776 221929 -242442424 - L1MC4a LINE L1 -1260 6548 6387 25 31 0 0 chr1 222185 222217 -242442136 + GC_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr1 222347 222396 -242441957 + GC_rich Low_complexity Low_complexity 1 49 0 245 146 31 73 chr1 222549 222645 -242441708 + C-rich Low_complexity Low_complexity 5 96 0 359 306 41 0 chr1 226330 226500 -242437853 + C-rich Low_complexity Low_complexity 3 179 0 300 247 45 45 chr1 226492 226670 -242437683 + (CCCCG)n Simple_repeat Simple_repeat 2 179 0 * 383 293 43 0 chr1 226576 226740 -242437613 + C-rich Low_complexity Low_complexity 3 173 0 349 301 43 0 chr1 226776 226939 -242437414 + C-rich Low_complexity Low_complexity 4 173 0 350 308 41 0 chr1 226970 227139 -242437214 + C-rich Low_complexity Low_complexity 4 179 0 291 222 11 83 chr1 227188 227368 -242436985 + CT-rich Low_complexity Low_complexity 1 167 0 * 343 317 37 0 chr1 227365 227529 -242436824 + C-rich Low_complexity Low_complexity 3 172 0 245 222 28 19 chr1 227690 227798 -242436555 + (CCGCG)n Simple_repeat Simple_repeat 4 112 0 24 0 0 0 chr1 227878 227902 -242436451 + GC_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr1 228016 228057 -242436296 + GC_rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr1 228373 228406 -242435947 + GC_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr1 232037 232062 -242432291 + GC_rich Low_complexity Low_complexity 1 25 0 187 176 0 54 chr1 235539 235613 -242428740 + G-rich Low_complexity Low_complexity 2 71 0 1678 145 0 0 chr1 235981 236229 -242428124 + AluSx SINE Alu 55 302 -10 1979 121 24 17 chr1 236234 236532 -242427821 + AluSq SINE Alu 1 300 -13 2334 83 3 0 chr1 236571 236873 -242427480 + AluSx SINE Alu 2 304 -8 737 104 104 49 chr1 236877 237021 -242427332 - FRAM SINE Alu -30 146 1 2189 86 6 22 chr1 237035 237348 -242427005 + AluSq SINE Alu 1 308 -5 575 315 89 78 chr1 237515 237791 -242426562 + L1MEc LINE L1 1390 1661 -4554 2247 39 3 43 chr1 237791 238096 -242426257 - AluY SINE Alu -18 293 1 575 315 89 78 chr1 238096 238303 -242426050 + L1MEc LINE L1 1661 1864 -4351 1445 150 66 31 chr1 238303 238589 -242425764 + AluJb SINE Alu 2 297 -15 575 315 89 78 chr1 238589 238755 -242425598 + L1MEc LINE L1 1864 2612 -3603 300 331 120 38 chr1 239534 239800 -242424553 - L2 LINE L2 -20 3293 3006 214 236 64 27 chr1 241943 242053 -242422300 + L2 LINE L2 3133 3246 -26 229 113 0 38 chr1 242462 242515 -242421838 + (GGGGA)n Simple_repeat Simple_repeat 5 55 0 316 349 0 0 chr1 242660 242809 -242421544 + G-rich Low_complexity Low_complexity 1 149 0 1774 147 7 20 chr1 243465 243757 -242420596 - AluJo SINE Alu -22 290 3 249 143 175 13 chr1 243913 244067 -242420286 + (GGCTG)n Simple_repeat Simple_repeat 1 179 0 305 106 211 7 chr1 244087 244229 -242420124 + (GGCTG)n Simple_repeat Simple_repeat 4 174 0 209 60 40 40 chr1 244804 244854 -242419499 + (CGGGGG)n Simple_repeat Simple_repeat 4 53 0 234 261 6 68 chr1 249683 249859 -242414494 + (TG)n Simple_repeat Simple_repeat 1 165 0 205 284 40 47 chr1 250107 250255 -242414098 + (CGTG)n Simple_repeat Simple_repeat 4 150 0 1631 176 40 10 chr1 452094 452395 -242211958 - AluSq SINE Alu -3 310 1 1243 156 5 0 chr1 452681 452880 -242211473 - AluSx SINE Alu -81 231 32 739 274 55 20 chr1 452887 453417 -242210936 - L1ME2 LINE L1 -47 6117 5549 378 250 15 76 chr1 453768 453900 -242210453 + L1MC4 LINE L1 6966 7089 -953 1800 167 10 6 chr1 453941 454252 -242210101 + AluJo SINE Alu 1 312 0 906 191 0 0 chr1 454252 454414 -242209939 + AluJo/FRAM SINE Alu 132 293 -19 182 91 30 0 chr1 454416 454449 -242209904 + GA-rich Low_complexity Low_complexity 1 34 0 963 312 148 10 chr1 454454 455057 -242209296 + L1MC4 LINE L1 7284 7990 -5 2355 85 0 0 chr1 455283 455588 -242208765 - AluY SINE Alu -6 305 1 2217 101 0 10 chr1 455589 455895 -242208458 - AluSx SINE Alu -9 303 1 2143 72 0 38 chr1 455906 456223 -242208130 - AluY SINE Alu 0 306 1 450 302 105 43 chr1 456428 456915 -242207438 + HAL1 LINE L1 1749 2265 -242 307 289 41 29 chr1 457209 457238 -242207115 + L1M4 LINE L1 2797 2824 -3322 2059 120 36 0 chr1 457238 457539 -242206814 + AluSx SINE Alu 1 312 0 307 289 41 29 chr1 457539 457751 -242206602 + L1M4 LINE L1 2824 3041 -3105 2266 106 0 0 chr1 457823 458134 -242206219 - AluY SINE Alu 0 311 1 2192 114 0 0 chr1 458134 458432 -242205921 - AluSx SINE Alu -14 298 1 2309 98 0 0 chr1 458445 458752 -242205601 - AluY SINE Alu -4 307 1 207 69 0 0 chr1 459630 459659 -242204694 + (CACGC)n Simple_repeat Simple_repeat 4 32 0 2438 47 0 17 chr1 463585 463886 -242200467 + AluY SINE Alu 6 301 -10 1091 68 0 0 chr1 463902 464035 -242200318 + AluSq/x SINE Alu 1 133 -179 2502 48 0 16 chr1 464038 464348 -242200005 + AluY SINE Alu 1 305 -6 2422 72 0 25 chr1 464364 464500 -242199853 + AluSq SINE Alu 1 139 -174 2380 68 0 10 chr1 464500 464808 -242199545 + AluY SINE Alu 1 305 -6 279 0 0 0 chr1 464808 464839 -242199514 + (TA)n Simple_repeat Simple_repeat 1 31 0 2422 72 0 25 chr1 464839 465022 -242199331 + AluSq SINE Alu 137 313 0 292 250 0 26 chr1 468200 468276 -242196077 + (CACG)n Simple_repeat Simple_repeat 3 76 0 213 39 0 0 chr1 468277 468303 -242196050 + (CA)n Simple_repeat Simple_repeat 2 27 0 277 395 26 21 chr1 468695 468885 -242195468 + MIR3 SINE MIR 4 194 -14 2477 47 7 0 chr1 469357 469654 -242194699 - AluY SINE Alu -12 299 1 182 152 0 22 chr1 470847 470893 -242193460 + (CGGGG)n Simple_repeat Simple_repeat 5 49 0 356 253 11 59 chr1 470966 471152 -242193201 + G-rich Low_complexity Low_complexity 3 179 0 * 422 124 15 144 chr1 471023 471225 -242193128 + (CGGGG)n Simple_repeat Simple_repeat 4 179 0 259 345 0 0 chr1 471168 471345 -242193008 + G-rich Low_complexity Low_complexity 1 177 0 * 21 36 0 0 chr1 471595 471623 -242192730 + GC_rich Low_complexity Low_complexity 1 28 0 243 350 98 12 chr1 472299 472462 -242191891 + MIR SINE MIR 47 223 -39 695 120 28 28 chr1 473320 473428 -242190925 + AluJo SINE Alu 34 141 -171 1629 173 43 17 chr1 473428 473550 -242190803 + AluJb SINE Alu 1 118 -194 189 0 0 0 chr1 473550 473571 -242190782 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1629 173 43 17 chr1 473571 473749 -242190604 + AluJb SINE Alu 118 309 -3 697 167 0 0 chr1 473755 473863 -242190490 + AluSg/x SINE Alu 191 298 -14 2400 84 0 0 chr1 474157 474466 -242189887 - AluY SINE Alu 0 311 3 2120 124 0 7 chr1 474468 474766 -242189587 - AluSx SINE Alu -16 296 1 761 276 128 43 chr1 475540 475780 -242188573 - MLT1C LTR MaLR -7 460 242 2154 132 3 0 chr1 475780 476090 -242188263 - AluSq SINE Alu -2 311 1 2288 104 0 3 chr1 476098 476406 -242187947 - AluSx SINE Alu -3 309 3 761 276 128 43 chr1 476406 476577 -242187776 - MLT1C LTR MaLR -231 236 4 270 0 0 0 chr1 476782 476812 -242187541 + (GGCTG)n Simple_repeat Simple_repeat 4 33 0 1897 171 0 0 chr1 479336 479646 -242184707 - AluSx SINE Alu -2 310 1 1481 177 79 4 chr1 479648 479925 -242184428 - AluJo SINE Alu -14 298 1 194 71 0 71 chr1 481381 481423 -242182930 + (CGGGGG)n Simple_repeat Simple_repeat 3 41 0 33 66 0 0 chr1 481489 481550 -242182803 + GC_rich Low_complexity Low_complexity 1 61 0 333 212 28 34 chr1 481818 481997 -242182356 + GA-rich Low_complexity Low_complexity 1 178 0 328 250 12 30 chr1 482025 482189 -242182164 + GA-rich Low_complexity Low_complexity 3 163 0 198 220 34 25 chr1 482220 482338 -242182015 + GA-rich Low_complexity Low_complexity 5 123 0 312 367 20 27 chr1 482364 482514 -242181839 + HAL1b LINE L1 1 149 -1199 1632 136 57 4 chr1 484099 484363 -242179990 + AluJo SINE Alu 1 278 -34 2353 52 24 0 chr1 485243 485533 -242178820 - AluSx SINE Alu -15 297 1 309 204 118 11 chr1 486916 487009 -242177344 - MER5A DNA MER1_type -5 184 82 2139 114 3 10 chr1 487615 487923 -242176430 - AluJo SINE Alu -6 306 1 2635 26 0 7 chr1 487936 488245 -242176108 - AluY SINE Alu 0 311 5 371 184 18 53 chr1 488391 488505 -242175848 + MLT1A2 LTR MaLR 111 220 -154 515 271 140 4 chr1 488920 489149 -242175204 + L1MC1 LINE L1 5840 6099 -234 185 65 32 0 chr1 489252 489283 -242175070 + (CAGGG)n Simple_repeat Simple_repeat 4 35 0 274 183 57 3 chr1 489285 489359 -242174994 + L1MC1 LINE L1 6261 6333 0 2433 71 3 0 chr1 489369 489680 -242174673 + AluSx SINE Alu 1 312 0 463 273 100 49 chr1 493067 493430 -242170923 + MLT1A1 LTR MaLR 4 358 -7 232 173 0 31 chr1 493432 493560 -242170793 + (CTCA)n Simple_repeat Simple_repeat 1 124 0 1150 103 13 0 chr1 493570 493726 -242170627 - AluSg/x SINE Alu -21 291 134 2177 94 0 16 chr1 493726 494035 -242170318 - AluSx SINE Alu -8 304 1 332 161 0 23 chr1 494045 494132 -242170221 + (CTCA)n Simple_repeat Simple_repeat 2 86 0 225 297 30 10 chr1 495706 495807 -242168546 - L2 LINE L2 -358 2956 2854 280 291 0 51 chr1 496368 496526 -242167827 + (TCCG)n Simple_repeat Simple_repeat 1 150 0 249 280 43 0 chr1 498366 498459 -242165894 + L1M4 LINE L1 5613 5709 -475 461 300 132 26 chr1 498462 498885 -242165468 + L1MB7 LINE L1 5671 6138 -46 270 326 0 0 chr1 500479 500577 -242163776 - MER47B DNA MER2_type 0 418 321 455 288 119 3 chr1 500588 500907 -242163446 - MER47B DNA MER2_type -51 367 12 477 162 42 6 chr1 501443 501610 -242162743 + (TTGGGG)n Simple_repeat Simple_repeat 2 174 0 302 326 0 41 chr1 503956 504128 -242160225 + (CACG)n Simple_repeat Simple_repeat 4 168 0 244 240 40 13 chr1 505083 505158 -242159195 + L1MB3 LINE L1 5413 5489 -682 327 266 23 0 chr1 505216 505312 -242159041 + L1MB3 LINE L1 5512 5613 -561 2156 101 7 7 chr1 505312 505608 -242158745 + AluSx SINE Alu 2 297 -15 327 266 23 0 chr1 505608 505620 -242158733 + L1MB3 LINE L1 5613 5623 -551 684 91 0 0 chr1 505620 505708 -242158645 - AluY SINE Alu -13 298 211 1732 250 41 30 chr1 505830 506397 -242157956 + L1MB3 LINE L1 5609 6181 -2 207 270 11 60 chr1 507048 507233 -242157120 + C-rich Low_complexity Low_complexity 2 177 0 * 311 253 18 42 chr1 507104 507270 -242157083 + (CCCA)n Simple_repeat Simple_repeat 1 162 0 732 207 39 6 chr1 508576 508755 -242155598 + MER58A DNA MER1_type 40 224 0 2151 110 0 13 chr1 508968 509278 -242155075 + AluSx SINE Alu 3 308 -4 1866 148 0 0 chr1 510448 510731 -242153622 - AluJb SINE Alu -23 289 7 635 242 62 0 chr1 511157 511335 -242153018 + MER58A DNA MER1_type 36 224 0 398 299 119 21 chr1 511340 511534 -242152819 - MIR SINE MIR -22 240 28 1261 208 144 5 chr1 512228 512617 -242151736 - MER54A LTR ERVL 0 901 459 321 289 21 48 chr1 512734 512921 -242151432 + L1M4 LINE L1 3729 3910 -2236 2345 76 0 29 chr1 512950 513265 -242151088 - AluY SINE Alu -5 306 1 627 297 36 89 chr1 514059 514126 -242150227 + L1M4 LINE L1 4369 4438 -1708 831 152 0 8 chr1 514126 514258 -242150095 + FLAM_C SINE Alu 1 131 -2 627 297 36 89 chr1 514258 514442 -242149911 + L1M4 LINE L1 4438 4600 -1546 2090 130 0 0 chr1 514442 514742 -242149611 + AluSx SINE Alu 1 300 -12 627 297 36 89 chr1 514742 514826 -242149527 + L1M4 LINE L1 4600 4687 -1459 411 21 0 0 chr1 516601 516649 -242147704 + (CA)n Simple_repeat Simple_repeat 2 49 0 1559 80 0 0 chr1 517761 517960 -242146393 + AluY SINE Alu 105 303 -8 1009 207 176 100 chr1 518904 519040 -242145313 + MER68 LTR ERV1 4 128 -434 678 136 88 32 chr1 519040 519165 -242145188 + FLAM_C SINE Alu 2 133 0 1009 207 176 100 chr1 519165 519176 -242145177 + MER68 LTR ERV1 128 137 -425 1811 149 40 7 chr1 519176 519477 -242144876 + AluSx SINE Alu 1 311 -1 1009 207 176 100 chr1 519477 519542 -242144811 + MER68 LTR ERV1 137 196 -366 1736 244 129 11 chr1 519542 520006 -242144347 + MLT2B1 LTR ERVL 2 520 0 1009 207 176 100 chr1 520006 520303 -242144050 + MER68 LTR ERV1 196 554 -8 253 289 11 44 chr1 520501 520591 -242143762 + L2 LINE L2 3185 3271 -1 241 225 12 12 chr1 521033 521113 -242143240 + (CACCAT)n Simple_repeat Simple_repeat 4 83 0 535 234 0 22 chr1 521165 521349 -242143004 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 705 204 2 19 chr1 521368 521780 -242142573 + (CACCAT)n Simple_repeat Simple_repeat 1 405 0 351 309 66 7 chr1 521869 522005 -242142348 - MIR SINE MIR -86 176 33 846 184 44 0 chr1 522209 522367 -242141986 - AluJb SINE Alu -55 257 93 268 299 23 0 chr1 523362 523449 -242140904 + MER91A DNA MER1_type 16 104 -92 1732 261 101 47 chr1 523618 524335 -242140018 + L1MB5 LINE L1 5353 6117 -57 2151 112 3 0 chr1 524335 524631 -242139722 - AluSx SINE Alu -15 297 1 1732 261 101 47 chr1 524631 524693 -242139660 + L1MB5 LINE L1 6117 6174 0 1526 170 3 80 chr1 524731 525055 -242139298 + AluJb SINE Alu 1 299 -13 783 200 48 24 chr1 525061 525226 -242139127 + FRAM SINE Alu 1 168 -8 735 278 15 0 chr1 525574 525772 -242138581 + Tigger3(Golem) DNA MER2_type 2837 3037 0 2466 46 0 13 chr1 526699 527005 -242137348 - AluY SINE Alu -9 302 1 1717 142 21 21 chr1 527014 527303 -242137050 - AluJo SINE Alu -23 289 1 201 350 73 36 chr1 528111 528248 -242136105 + MER5A DNA MER1_type 13 154 -35 313 240 40 0 chr1 528290 528390 -242135963 + (TGGA)n Simple_repeat Simple_repeat 1 104 0 534 308 20 20 chr1 528405 528751 -242135602 + (TGGA)n Simple_repeat Simple_repeat 1 346 0 260 268 26 0 chr1 528765 528918 -242135435 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 276 330 25 0 chr1 528932 529050 -242135303 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 219 263 25 0 chr1 529064 529182 -242135171 + (TGGA)n Simple_repeat Simple_repeat 4 124 0 385 321 28 11 chr1 529197 529542 -242134811 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 447 305 29 0 chr1 529556 529730 -242134623 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 410 316 23 17 chr1 529751 529928 -242134425 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 386 188 41 0 chr1 529970 530140 -242134213 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 1387 100 5 0 chr1 531194 531384 -242132969 + AluY SINE Alu 108 298 -13 414 276 266 3 chr1 531386 531672 -242132681 - L1MC4 LINE L1 -1223 6819 6459 471 241 87 100 chr1 531725 531908 -242132445 + LTR16C LTR ERVL 254 438 -53 933 110 16 0 chr1 531908 532035 -242132318 + FLAM_C SINE Alu 1 129 -4 2177 95 0 3 chr1 532045 532366 -242131987 + AluSx SINE Alu 1 320 0 471 241 87 100 chr1 532366 532411 -242131942 + LTR16C LTR ERVL 447 491 0 2310 91 3 3 chr1 532434 532742 -242131611 + AluSq SINE Alu 1 308 -5 183 156 0 0 chr1 532893 532925 -242131428 + (CAGGG)n Simple_repeat Simple_repeat 5 36 0 209 302 47 19 chr1 533005 533111 -242131242 + L2 LINE L2 2950 3058 -255 2301 108 0 0 chr1 534104 534411 -242129942 - AluSx SINE Alu -3 309 3 2355 58 7 0 chr1 534422 534713 -242129640 - AluY SINE Alu -18 293 1 1543 145 16 92 chr1 534714 535031 -242129322 - AluJb SINE Alu -17 295 3 37 23 0 0 chr1 535897 535941 -242128412 + GC_rich Low_complexity Low_complexity 1 44 0 30 77 0 0 chr1 536297 536362 -242127991 + GC_rich Low_complexity Low_complexity 1 65 0 206 179 0 15 chr1 536362 536429 -242127924 + (CCGAG)n Simple_repeat Simple_repeat 5 70 0 36 40 0 0 chr1 536589 536639 -242127714 + GC_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr1 536814 536843 -242127510 + GC_rich Low_complexity Low_complexity 1 29 0 198 143 0 0 chr1 538845 538880 -242125473 + (TG)n Simple_repeat Simple_repeat 1 35 0 330 187 131 0 chr1 540596 540691 -242123662 + MIR SINE MIR 41 146 -83 2162 121 0 6 chr1 542918 543232 -242121121 - AluSx SINE Alu 0 312 1 2197 79 3 7 chr1 544302 544593 -242119760 - AluSc SINE Alu -19 290 1 190 233 47 0 chr1 545295 545338 -242119015 - L2 LINE L2 -2918 396 352 2263 61 10 3 chr1 549285 549578 -242114775 - AluY SINE Alu -16 295 1 293 258 24 24 chr1 549582 549706 -242114647 - L1MC5 LINE L1 -178 7783 7660 321 125 0 0 chr1 549831 549887 -242114466 + (TG)n Simple_repeat Simple_repeat 1 56 0 1507 179 52 10 chr1 550404 550695 -242113658 - AluJo SINE Alu -9 303 1 241 185 0 98 chr1 551741 551833 -242112520 - L1ME LINE L1 -414 5707 5625 2225 71 4 0 chr1 551844 552151 -242112202 - AluY SINE Alu 0 308 1 932 89 0 0 chr1 552318 552442 -242111911 - AluSq/x SINE Alu -189 124 1 1902 120 3 30 chr1 556768 557069 -242107284 - AluSg SINE Alu -17 293 1 238 143 0 48 chr1 557169 557211 -242107142 + MER5A DNA MER1_type 110 149 -40 688 176 7 44 chr1 557302 557438 -242106915 + FLAM_C SINE Alu 1 131 -2 311 247 93 33 chr1 558439 558589 -242105764 + MLT1A1 LTR MaLR 95 253 -112 263 330 6 34 chr1 559184 559426 -242104927 + (CGTG)n Simple_repeat Simple_repeat 1 235 0 2395 78 6 3 chr1 559525 559871 -242104482 - THE1A LTR MaLR -8 347 1 758 135 0 0 chr1 559871 559975 -242104378 + AluSg/x SINE Alu 108 211 -99 2308 59 7 0 chr1 561351 561641 -242102712 + AluY SINE Alu 7 298 -13 1622 181 26 29 chr1 567912 568222 -242096131 + AluJo SINE Alu 1 309 -3 321 308 22 0 chr1 568226 568317 -242096036 + GA-rich Low_complexity Low_complexity 4 96 0 2090 280 108 22 chr1 570478 571164 -242093189 + L1MC4 LINE L1 366 1184 -5537 2108 136 0 3 chr1 571164 571474 -242092879 - AluJb SINE Alu -3 309 1 2090 280 108 22 chr1 571474 571893 -242092460 + L1MC4 LINE L1 1184 1566 -5155 2230 99 3 3 chr1 572047 572359 -242091994 + AluSx SINE Alu 1 312 0 737 168 23 15 chr1 572457 572588 -242091765 + AluJb SINE Alu 1 132 -180 1986 107 3 31 chr1 572590 572909 -242091444 + AluSg SINE Alu 1 310 0 227 219 122 12 chr1 572924 573006 -242091347 + L1MC4 LINE L1 1873 1963 -4577 923 130 0 0 chr1 573133 573264 -242091089 - FLAM_C SINE Alu -2 131 1 701 196 30 60 chr1 573273 573441 -242090912 - AluSg/x SINE Alu -12 298 136 943 241 106 75 chr1 573448 573624 -242090729 + L1MC4 LINE L1 3945 4114 -2426 2162 111 3 0 chr1 573624 573921 -242090432 + AluSx SINE Alu 4 301 -11 943 241 106 75 chr1 573921 573955 -242090398 + L1MC4 LINE L1 4114 4145 -2395 2073 130 3 3 chr1 573955 574262 -242090091 + AluSx SINE Alu 1 307 -5 943 241 106 75 chr1 574262 574598 -242089755 + L1MC4 LINE L1 4145 4509 -2031 2230 256 63 20 chr1 575327 576317 -242088036 + L1MC4 LINE L1 4457 5404 -1154 2027 145 7 0 chr1 576317 576627 -242087726 + AluJb SINE Alu 1 312 0 2230 256 63 20 chr1 576627 577619 -242086734 + L1MC4 LINE L1 5404 6558 0 608 289 11 21 chr1 577831 578018 -242086335 - MER58A DNA MER1_type 0 224 40 466 272 68 0 chr1 578020 578167 -242086186 + MER5A DNA MER1_type 24 180 -9 2031 116 20 0 chr1 578312 578606 -242085747 + AluSg SINE Alu 2 301 -9 2062 122 3 0 chr1 579116 579444 -242084909 + AluSp SINE Alu 1 313 0 735 352 153 16 chr1 579835 580480 -242083873 + HAL1 LINE L1 828 1561 -946 1924 148 0 3 chr1 584042 584339 -242080014 - AluSx SINE Alu -16 296 1 791 155 8 0 chr1 585733 585862 -242078491 + AluJo SINE Alu 5 134 -178 342 358 102 20 chr1 586435 586689 -242077664 + L1MC4 LINE L1 7768 8042 0 2188 86 7 3 chr1 586945 587237 -242077116 + AluSx SINE Alu 1 293 -19 2257 100 7 0 chr1 589911 590210 -242074143 - AluSg SINE Alu -9 301 1 2667 217 68 19 chr1 590735 591056 -242073297 + L1MB3 LINE L1 5258 5562 -621 2140 129 3 0 chr1 591056 591367 -242072986 + AluSx SINE Alu 1 312 0 2084 133 0 10 chr1 591377 591686 -242072667 + AluSx SINE Alu 1 306 -6 2667 217 68 19 chr1 591686 592108 -242072245 + L1MB3 LINE L1 5570 6049 -134 720 272 22 0 chr1 592125 592353 -242072000 - L1MEd LINE L1 -3654 2475 2243 316 235 265 0 chr1 592405 592507 -242071846 + L1ME LINE L1 5312 5440 -681 1937 132 0 17 chr1 593572 593868 -242070485 - AluJb SINE Alu -21 291 1 2508 58 0 3 chr1 596171 596483 -242067870 + AluY SINE Alu 1 311 0 197 273 0 0 chr1 596732 596776 -242067577 + L2 LINE L2 3208 3251 -21 2407 90 0 0 chr1 597811 598121 -242066232 + AluSx SINE Alu 1 310 -2 1990 114 4 0 chr1 598495 598768 -242065585 - AluSx SINE Alu -38 274 1 2120 105 0 13 chr1 598780 599084 -242065269 - AluSx SINE Alu -12 300 1 260 277 142 14 chr1 599186 599327 -242065026 - L1MEd LINE L1 -5382 737 579 2231 94 0 7 chr1 599838 600147 -242064206 - AluSg1 SINE Alu -2 307 1 1990 108 49 0 chr1 600513 600801 -242063552 - AluSx SINE Alu -10 302 1 484 262 159 0 chr1 601849 601977 -242062376 + MLT1C LTR MaLR 192 298 -169 1833 242 28 74 chr1 601977 602556 -242061797 + MLT2B3 LTR ERVL 1 552 -2 484 262 159 0 chr1 602556 602660 -242061693 + MLT1C LTR MaLR 298 461 -6 215 339 0 43 chr1 605793 605979 -242058374 + G-rich Low_complexity Low_complexity 1 178 0 292 192 110 0 chr1 606458 606531 -242057822 + MLT1B LTR MaLR 5 85 -289 * 314 204 13 26 chr1 606524 606611 -242057742 + MLT1B LTR MaLR 265 375 -15 2378 49 7 0 chr1 607349 607637 -242056716 + AluY SINE Alu 6 295 -16 788 138 0 43 chr1 607994 608132 -242056221 - AluSq/x SINE Alu -180 132 1 1106 282 65 8 chr1 608594 608963 -242055390 + MLT2C1 LTR ERVL 1 390 -7 1905 162 0 9 chr1 609249 609564 -242054789 + AluJb SINE Alu 1 312 0 466 259 72 96 chr1 609790 610153 -242054200 - L1MC3 LINE L1 -67 7718 7365 365 263 66 6 chr1 614774 614942 -242049411 - MLT1A2 LTR MaLR 0 374 205 445 326 0 0 chr1 615047 615222 -242049131 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 491 312 0 0 chr1 615248 615667 -242048686 + (CCCTAA)n Simple_repeat Simple_repeat 1 419 0 413 326 11 0 chr1 615690 615868 -242048485 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 350 296 23 17 chr1 615960 616136 -242048217 + (CACCAT)n Simple_repeat Simple_repeat 2 178 0 * 467 326 0 0 chr1 616127 616302 -242048051 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 325 317 6 22 chr1 616314 616497 -242047856 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 545 181 19 9 chr1 616532 616637 -242047716 - MLT1A2 LTR MaLR -268 106 1 479 282 138 0 chr1 616637 616825 -242047528 + MLT-int LTR MaLR 1496 1709 -26 610 331 117 48 chr1 616828 616864 -242047489 + L1MC/D LINE L1 1263 1295 -5426 1796 134 15 0 chr1 616864 617133 -242047220 + AluSq SINE Alu 2 274 -39 610 331 117 48 chr1 617133 617380 -242046973 + L1MC/D LINE L1 1295 1523 -5198 2120 90 40 10 chr1 617380 617681 -242046672 + AluSq SINE Alu 1 310 -3 610 331 117 48 chr1 617681 618014 -242046339 + L1MC/D LINE L1 1523 1986 -4735 1219 134 0 0 chr1 618014 618201 -242046152 + AluSq SINE Alu 127 313 0 428 274 79 51 chr1 618421 618462 -242045891 + L1MC/D LINE L1 2255 2293 -4247 2255 122 0 0 chr1 618462 618774 -242045579 + AluSq SINE Alu 1 312 -1 428 274 79 51 chr1 618774 619220 -242045133 + L1MC/D LINE L1 2293 2725 -3815 396 0 0 0 chr1 619220 619264 -242045089 + (CA)n Simple_repeat Simple_repeat 1 44 0 428 274 79 51 chr1 619264 619341 -242045012 + L1MC/D LINE L1 2725 2792 -3748 2372 76 0 0 chr1 619341 619642 -242044711 + AluY SINE Alu 1 301 -10 428 274 79 51 chr1 619642 619682 -242044671 + L1MC/D LINE L1 2792 2829 -3711 * 801 283 93 67 chr1 619653 619682 -242044671 + L1MC/D LINE L1 4064 4091 -2449 2298 77 16 16 chr1 619682 619993 -242044360 + AluSx SINE Alu 1 311 -1 801 283 93 67 chr1 619993 620738 -242043615 + L1MC/D LINE L1 4091 4879 -1661 1906 129 11 4 chr1 620738 621017 -242043336 + AluJo SINE Alu 1 281 -31 801 283 93 67 chr1 621017 621385 -242042968 + L1MC/D LINE L1 4879 5236 -1304 260 319 56 0 chr1 621426 621570 -242042783 + L1MC/D LINE L1 5558 5709 -831 233 136 0 23 chr1 621584 621628 -242042725 + L1M LINE L1 5700 5742 -996 2246 251 67 14 chr1 621811 622501 -242041852 + MER21B LTR ERV1 14 739 -124 2386 88 0 0 chr1 623187 623494 -242040859 - AluSc SINE Alu -2 307 1 2164 102 0 7 chr1 624996 625293 -242039060 + AluSq SINE Alu 1 296 -12 204 67 0 0 chr1 625293 625323 -242039030 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 236 325 17 51 chr1 628395 628512 -242035841 - MIR SINE MIR -47 215 103 655 247 36 10 chr1 628704 629136 -242035217 + MLT1D LTR MaLR 35 505 0 189 146 0 24 chr1 629563 629604 -242034749 - L2 LINE L2 -206 3066 3027 327 365 14 28 chr1 630313 630458 -242033895 + L1MC/D LINE L1 6006 6148 -2054 2229 91 10 0 chr1 632181 632478 -242031875 + AluSq SINE Alu 1 300 -13 682 269 143 11 chr1 633575 633939 -242030414 + LTR52 LTR ERVL 2 413 -8 698 139 123 0 chr1 634158 634280 -242030073 - FRAM SINE Alu -39 137 1 1384 145 110 4 chr1 634728 634983 -242029370 + AluJo SINE Alu 1 282 -30 2347 94 0 0 chr1 635249 635558 -242028795 + AluY SINE Alu 1 309 -2 345 374 67 5 chr1 636127 636322 -242028031 - MIR SINE MIR -16 246 40 207 69 0 0 chr1 636341 636370 -242027983 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 22 35 0 0 chr1 636843 636872 -242027481 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 638537 638557 -242025796 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2224 85 0 0 chr1 638898 639230 -242025123 + AluY SINE Alu 1 332 0 2581 150 23 48 chr1 639576 640137 -242024216 + LTR10A LTR ERV1 1 547 -62 933 172 0 0 chr1 641945 642125 -242022228 + G-rich Low_complexity Low_complexity 1 180 0 405 141 0 0 chr1 642125 642196 -242022157 + (GGGGA)n Simple_repeat Simple_repeat 1 71 0 22 0 0 0 chr1 645171 645193 -242019160 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 645938 645967 -242018386 + AT_rich Low_complexity Low_complexity 1 29 0 650 266 77 0 chr1 646171 646419 -242017934 + L1M3 LINE L1 5283 5549 -634 739 130 84 0 chr1 646421 646552 -242017801 + L1MB2 LINE L1 6029 6170 -1 2184 102 0 16 chr1 646558 646863 -242017490 + AluSq SINE Alu 1 300 -13 546 271 62 71 chr1 647651 647976 -242016377 + MLT1C LTR MaLR 5 326 -64 595 189 27 0 chr1 647978 648089 -242016264 - FLAM_A SINE Alu -5 137 24 260 261 29 0 chr1 648095 648164 -242016189 + MLT1C LTR MaLR 310 380 -10 858 266 88 10 chr1 648164 648461 -242015892 + MLT1A1 LTR MaLR 3 322 -43 195 42 0 0 chr1 648941 648965 -242015388 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 231 209 0 0 chr1 649032 649075 -242015278 + L1ME4a LINE L1 6074 6116 -5 242 358 12 0 chr1 649415 649496 -242014857 - L2 LINE L2 -7 3306 3225 476 354 54 57 chr1 650477 650514 -242013839 + L1MC4a LINE L1 6151 6187 -1621 2186 123 0 0 chr1 650514 650816 -242013537 + AluSx SINE Alu 1 302 -10 476 354 54 57 chr1 650816 651092 -242013261 + L1MC4a LINE L1 6187 6463 -1345 283 348 55 8 chr1 651251 651487 -242012866 + L1MC4 LINE L1 6780 7026 -1016 300 160 0 0 chr1 651491 651541 -242012812 + Alu SINE Alu 1 50 -253 1976 124 3 10 chr1 651541 651839 -242012514 + AluSx SINE Alu 6 301 -11 1989 124 7 13 chr1 652978 653284 -242011069 - AluJo SINE Alu -8 304 1 303 292 39 0 chr1 653555 653685 -242010668 + Charlie1 DNA MER1_type 19 153 -2608 1166 248 58 100 chr1 653691 653748 -242010605 + Charlie1 DNA MER1_type 2083 2141 -620 2159 100 0 26 chr1 653748 654057 -242010296 - AluSx SINE Alu -11 301 1 1166 248 58 100 chr1 654057 654688 -242009665 + Charlie1 DNA MER1_type 2141 2742 -19 264 281 9 18 chr1 655075 655189 -242009164 + C-rich Low_complexity Low_complexity 1 113 0 492 251 86 29 chr1 655320 655495 -242008858 - MER63A DNA MER1_type -25 185 1 1260 286 133 10 chr1 656684 657309 -242007044 + L1MC3 LINE L1 6898 7599 -186 210 357 84 32 chr1 658428 658582 -242005771 - MIR SINE MIR -76 186 25 * 438 303 118 22 chr1 658579 658757 -242005596 + MIR SINE MIR 14 208 -54 1294 266 189 36 chr1 658827 658901 -242005452 + HAL1 LINE L1 973 1034 -1473 2483 50 0 0 chr1 658901 659198 -242005155 + AluY SINE Alu 1 297 -14 1294 266 189 36 chr1 659198 660414 -242003939 + HAL1 LINE L1 1034 2461 -46 22 0 0 0 chr1 660446 660468 -242003885 + AT_rich Low_complexity Low_complexity 1 22 0 2250 99 3 0 chr1 661279 661582 -242002771 - AluSx SINE Alu -8 304 1 21 0 0 0 chr1 664069 664090 -242000263 + GC_rich Low_complexity Low_complexity 1 21 0 764 235 76 11 chr1 665270 665741 -241998612 + MER74A LTR ERVL 25 554 -4 198 186 47 0 chr1 665783 665826 -241998527 + MIR SINE MIR 28 72 -190 473 252 97 0 chr1 666014 666169 -241998184 + MER58 DNA MER1_type 64 233 -108 228 262 27 57 chr1 666778 666943 -241997410 - MIR SINE MIR -15 247 43 224 253 93 93 chr1 668541 668703 -241995650 - MIR3 SINE MIR -46 162 1 339 269 74 27 chr1 669386 669535 -241994818 + MLT1D LTR MaLR 1 156 -349 1031 279 45 5 chr1 670712 671138 -241993215 + L1MB3 LINE L1 2568 3010 -3136 715 185 31 8 chr1 671146 671276 -241993077 - AluJb SINE Alu -179 133 1 362 238 58 10 chr1 671276 671408 -241992945 + L1MB3 LINE L1 3007 3147 -2999 1673 140 4 0 chr1 671408 671658 -241992695 + AluSx SINE Alu 1 251 -61 362 238 58 10 chr1 671658 671697 -241992656 + L1MB3 LINE L1 3147 3183 -2963 * 6819 212 30 38 chr1 671688 672347 -241992006 + L1MB3 LINE L1 3489 4152 -2031 2439 59 0 3 chr1 672347 672653 -241991700 - AluY SINE Alu -6 305 1 6819 212 30 38 chr1 672653 673903 -241990450 + L1MB3 LINE L1 4152 5410 -773 2112 128 0 3 chr1 673903 674208 -241990145 + AluSx SINE Alu 1 304 -8 6819 212 30 38 chr1 674208 674437 -241989916 + L1MB3 LINE L1 5410 5639 -544 2137 131 0 0 chr1 674437 674743 -241989610 + AluJb SINE Alu 1 306 -6 6819 212 30 38 chr1 674743 675262 -241989091 + L1MB3 LINE L1 5639 6133 -50 1653 164 13 30 chr1 675262 675567 -241988786 + AluSx SINE Alu 1 300 -12 6819 212 30 38 chr1 675567 675618 -241988735 + L1MB3 LINE L1 6133 6183 0 543 271 90 24 chr1 675613 675868 -241988485 + L1MB5 LINE L1 5814 6085 -89 * 211 309 43 0 chr1 677559 677653 -241986700 + L2 LINE L2 2220 2317 -997 812 158 0 0 chr1 678956 679076 -241985277 + AluSq/x SINE Alu 1 120 -193 2138 121 3 3 chr1 679131 679438 -241984915 - AluSx SINE Alu -5 307 1 1249 166 18 79 chr1 679563 679747 -241984606 - AluJo SINE Alu -19 293 130 2032 120 3 13 chr1 679747 679883 -241984470 + AluSx SINE Alu 1 137 -175 2250 81 0 7 chr1 679883 680178 -241984175 + AluSc SINE Alu 1 293 -16 2032 120 3 13 chr1 680178 680341 -241984012 + AluSx SINE Alu 137 297 -15 1249 166 18 79 chr1 680341 680434 -241983919 - AluJo SINE Alu -182 130 33 965 199 0 0 chr1 680453 680614 -241983739 + FRAM SINE Alu 1 161 -5 2194 76 0 28 chr1 680615 680929 -241983424 + AluY SINE Alu 1 306 0 792 79 0 0 chr1 680940 681041 -241983312 + AluS SINE Alu 1 101 -212 411 94 0 0 chr1 681159 681212 -241983141 + AluSq/x SINE Alu 68 120 -192 1119 151 5 5 chr1 681267 681452 -241982901 - AluSg/x SINE Alu -5 305 121 2448 61 0 10 chr1 681994 682306 -241982047 + AluY SINE Alu 1 309 -2 2370 67 0 0 chr1 683780 684079 -241980274 + AluY SINE Alu 2 300 -11 259 281 133 10 chr1 685198 685511 -241978842 + L1ME LINE L1 5265 5613 -508 2142 205 16 5 chr1 685515 686070 -241978283 + L1MB7 LINE L1 3872 4432 -1714 258 281 0 0 chr1 686232 686296 -241978057 + C-rich Low_complexity Low_complexity 1 64 0 240 35 0 0 chr1 686346 686375 -241977978 + (CGGGGG)n Simple_repeat Simple_repeat 5 33 0 183 213 0 0 chr1 688234 688309 -241976044 + CT-rich Low_complexity Low_complexity 2 76 0 295 128 12 47 chr1 696165 696251 -241968102 + CT-rich Low_complexity Low_complexity 3 85 0 297 68 0 0 chr1 696381 696425 -241967928 + (CAA)n Simple_repeat Simple_repeat 2 45 0 509 163 0 0 chr1 696432 696512 -241967841 - AluJ/FLAM SINE Alu -232 80 1 2132 210 17 15 chr1 696525 696809 -241967544 + L1MB7 LINE L1 5315 5602 -582 2166 95 14 0 chr1 696809 697105 -241967248 + AluSp SINE Alu 1 300 -13 2132 210 17 15 chr1 697105 697344 -241967009 + L1MB7 LINE L1 5602 5839 -345 266 333 17 8 chr1 697360 697477 -241966876 + (CA)n Simple_repeat Simple_repeat 1 118 0 1726 258 77 31 chr1 704882 705536 -241958817 + L1MB3 LINE L1 5454 6137 -46 682 161 62 8 chr1 705537 705667 -241958686 + AluJo SINE Alu 1 137 -175 1852 140 3 41 chr1 705721 706035 -241958318 - AluJo SINE Alu -10 302 1 213 311 212 0 chr1 707489 707621 -241956732 + MIR SINE MIR 80 239 -23 365 341 28 17 chr1 708271 708450 -241955903 + LTR41 LTR ERVL 3 183 -590 295 311 9 0 chr1 708649 708755 -241955598 - ERVL LTR ERVL -5174 590 484 324 314 48 0 chr1 709376 709500 -241954853 + L2 LINE L2 2415 2544 -770 1327 213 161 20 chr1 709572 709981 -241954372 + MER34C LTR ERV1 36 502 -83 2125 120 7 0 chr1 711602 711910 -241952443 - AluSx SINE Alu -2 310 1 259 250 0 0 chr1 712069 712133 -241952220 + MLT1H LTR MaLR 111 174 -375 231 293 35 17 chr1 712252 712368 -241951985 + MLT1H LTR MaLR 416 533 -16 1327 164 13 4 chr1 713761 713986 -241950367 + AluJb SINE Alu 85 311 -1 2328 100 0 0 chr1 714007 714316 -241950037 + AluSq SINE Alu 1 309 -4 379 193 9 9 chr1 714614 714723 -241949630 + CT-rich Low_complexity Low_complexity 4 112 0 2247 109 0 3 chr1 714830 715141 -241949212 + AluSq SINE Alu 1 310 -3 1927 144 3 0 chr1 715275 715573 -241948780 - AluSx SINE Alu -13 299 1 2024 76 14 4 chr1 716756 717031 -241947322 - AluSx SINE Alu -14 298 21 35 71 0 0 chr1 718033 718103 -241946250 + GC_rich Low_complexity Low_complexity 1 70 0 268 293 187 8 chr1 719271 719517 -241944836 - L2 LINE L2 -9 3304 3015 472 325 97 21 chr1 719586 719809 -241944544 - MIR SINE MIR -28 180 3 284 271 75 45 chr1 720530 720663 -241943690 + MIR SINE MIR 51 187 -75 354 331 40 20 chr1 720682 720830 -241943523 - MIR SINE MIR -103 159 9 428 269 47 0 chr1 722067 722216 -241942137 - MER58C DNA MER1_type -20 195 40 241 237 41 21 chr1 722496 722593 -241941760 + L1MC5 LINE L1 7831 7929 -32 231 188 0 0 chr1 724002 724050 -241940303 + Alu SINE Alu 252 299 -3 * 435 233 27 82 chr1 724047 724193 -241940160 - MER45B DNA AcHobo -255 785 648 362 258 33 46 chr1 724370 724521 -241939832 - MER45B DNA AcHobo -823 217 69 1864 28 0 0 chr1 724877 725092 -241939261 - AluY SINE Alu -14 297 83 2219 113 6 0 chr1 725514 725825 -241938528 - AluSp SINE Alu 0 313 1 949 134 0 0 chr1 725825 725959 -241938394 - AluSq/x SINE Alu -178 135 2 309 258 28 66 chr1 727006 727188 -241937165 + (CAGGG)n Simple_repeat Simple_repeat 5 179 0 182 326 0 0 chr1 729993 730036 -241934317 - L2 LINE L2 -5 3267 3225 1588 248 71 92 chr1 732956 733690 -241930663 - L1MB7 LINE L1 0 6184 5481 1686 141 0 57 chr1 733690 733988 -241930365 + AluJb SINE Alu 15 295 -17 1588 248 71 92 chr1 733988 734365 -241929988 - L1MB7 LINE L1 -703 5481 5098 842 199 0 0 chr1 734694 734850 -241929503 - FRAM SINE Alu -20 156 1 257 362 0 0 chr1 747179 747356 -241916997 + C-rich Low_complexity Low_complexity 1 177 0 614 99 12 56 chr1 752770 752932 -241911421 + (TTCC)n Simple_repeat Simple_repeat 4 158 0 370 55 36 0 chr1 752932 752987 -241911366 + (TC)n Simple_repeat Simple_repeat 1 57 0 880 220 31 135 chr1 752987 753314 -241911039 - AluYb8 SINE Alu -1 317 25 1564 143 112 28 chr1 753325 753612 -241910741 - AluJo SINE Alu -1 311 1 428 323 99 53 chr1 754718 755245 -241909108 + L1M2 LINE L1 1499 4173 -2675 375 245 5 54 chr1 759528 759712 -241904641 + C-rich Low_complexity Low_complexity 6 180 0 239 311 83 67 chr1 767183 767495 -241896858 + L2 LINE L2 2426 2742 -572 183 353 88 48 chr1 768171 768420 -241895933 + L2 LINE L2 2520 2778 -536 2260 95 10 0 chr1 769128 769433 -241894920 + AluSc SINE Alu 1 308 -1 735 148 15 37 chr1 770516 770743 -241893610 - FLAM_C SINE Alu 0 143 6 244 183 50 0 chr1 771664 771724 -241892629 + (CTGGGG)n Simple_repeat Simple_repeat 6 68 0 234 0 0 0 chr1 773542 773568 -241890785 + (CA)n Simple_repeat Simple_repeat 1 26 0 400 132 15 15 chr1 773996 774064 -241890289 + FRAM SINE Alu 28 95 -81 2235 98 0 0 chr1 774088 774394 -241889959 - AluSx SINE Alu -2 310 5 517 351 4 9 chr1 775786 776017 -241888336 - L1MC4 LINE L1 -378 7664 7435 229 154 39 0 chr1 776165 776217 -241888136 - L1MC4 LINE L1 -1185 6857 6804 526 223 23 0 chr1 776332 776507 -241887846 + (CACG)n Simple_repeat Simple_repeat 1 179 0 330 320 0 0 chr1 776524 776624 -241887729 + (CA)n Simple_repeat Simple_repeat 1 100 0 413 306 31 12 chr1 779916 780076 -241884277 + MLT1J LTR MaLR 210 372 -139 300 326 47 0 chr1 780296 780425 -241883928 + MLT1J LTR MaLR 238 372 -139 1120 101 0 0 chr1 782066 782215 -241882138 + AluSq/x SINE Alu 1 149 -164 1703 126 0 8 chr1 782366 782621 -241881732 + AluJb SINE Alu 21 273 -39 322 250 0 0 chr1 782781 782845 -241881508 - MIR SINE MIR -96 166 103 28 0 0 0 chr1 783132 783160 -241881193 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 783327 783350 -241881003 + GC_rich Low_complexity Low_complexity 1 23 0 255 259 0 0 chr1 787334 787388 -241876965 + L2 LINE L2 3211 3264 -8 2050 119 10 10 chr1 787664 787976 -241876377 + AluSx SINE Alu 1 312 0 2947 264 114 50 chr1 788366 789338 -241875015 + L1M4 LINE L1 55 963 -5252 2136 110 7 3 chr1 789338 789662 -241874691 + AluSx SINE Alu 1 312 0 2947 264 114 50 chr1 789662 789771 -241874582 + L1M4 LINE L1 963 1064 -5151 2345 162 27 39 chr1 789771 790017 -241874336 - Tigger2a DNA MER2_type -2274 434 194 2170 96 10 0 chr1 790017 790310 -241874043 + AluSg SINE Alu 3 298 -12 2345 162 27 39 chr1 790310 790502 -241873851 - Tigger2a DNA MER2_type -2514 194 1 2947 264 114 50 chr1 790502 790703 -241873650 + L1M4 LINE L1 1064 1251 -4964 1806 94 0 12 chr1 790703 790947 -241873406 + AluSx SINE Alu 62 302 -10 2947 264 114 50 chr1 790947 791538 -241872815 + L1M4 LINE L1 1251 1803 -4412 1904 136 7 27 chr1 791538 791839 -241872514 + AluJo SINE Alu 1 295 -17 210 37 0 0 chr1 791849 791876 -241872477 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2947 264 114 50 chr1 791876 792393 -241871960 + L1M4 LINE L1 1811 2583 -3632 * 10525 24 9 0 chr1 792390 793771 -241870582 - L1PA3 LINE L1 -750 5396 4003 6801 27 1 0 chr1 793771 794550 -241869803 + L1PA3 LINE L1 5365 6152 -3 2015 136 0 38 chr1 794582 794898 -241869455 - AluSx SINE Alu -7 305 2 331 221 35 0 chr1 794899 794985 -241869368 + L1M4 LINE L1 2586 2674 -3541 387 230 119 16 chr1 795043 795169 -241869184 + L1M4 LINE L1 2631 2769 -3446 723 188 17 23 chr1 795169 795345 -241869008 + L1M4 LINE L1 3655 3829 -2386 228 67 0 0 chr1 795370 795400 -241868953 + (A)n Simple_repeat Simple_repeat 1 30 0 927 146 0 0 chr1 795400 795530 -241868823 + FLAM_C SINE Alu 1 130 -3 1365 190 90 46 chr1 795547 795710 -241868643 + L1M4 LINE L1 4942 5096 -1157 1947 107 46 7 chr1 795710 795991 -241868362 - AluSq SINE Alu -21 292 1 1365 190 90 46 chr1 795991 796253 -241868100 + L1M4 LINE L1 5096 5345 -908 2332 189 97 5 chr1 796253 796697 -241867656 - MER66B LTR ERV1 0 486 2 1365 190 90 46 chr1 796697 796845 -241867508 + L1M4 LINE L1 5345 5485 -768 2155 101 0 3 chr1 796845 797132 -241867221 + AluSc SINE Alu 7 292 -17 2109 113 0 10 chr1 797132 797443 -241866910 + AluY SINE Alu 1 308 -3 1365 190 90 46 chr1 797443 797515 -241866838 + L1M4 LINE L1 5484 5623 -630 2519 262 38 39 chr1 797533 798713 -241865640 + L1M4 LINE L1 4172 5305 -841 1262 157 0 65 chr1 798724 798985 -241865368 - AluJb SINE Alu -1 311 68 2230 74 0 17 chr1 798986 799285 -241865068 + AluY SINE Alu 1 294 -17 231 173 0 0 chr1 857463 857515 -241806838 + (CTG)n Simple_repeat Simple_repeat 3 54 0 2333 74 0 13 chr1 862905 863217 -241801136 + AluY SINE Alu 1 308 -3 579 243 32 46 chr1 863228 863446 -241800907 - L1MB2 LINE L1 -16 6155 5941 2190 88 0 36 chr1 863451 863759 -241800594 + AluSg1 SINE Alu 1 297 -12 189 0 0 0 chr1 863765 863786 -241800567 + (T)n Simple_repeat Simple_repeat 1 21 0 360 306 130 32 chr1 863915 864272 -241800081 - HAL1 LINE L1 -1301 1206 879 541 246 15 0 chr1 864398 864532 -241799821 - L1MB2 LINE L1 -350 5821 5686 962 96 75 91 chr1 864532 864572 -241799781 + MLT2D LTR ERVL 82 121 -293 2196 88 0 23 chr1 864572 864877 -241799476 + AluY SINE Alu 1 298 -13 962 96 75 91 chr1 864877 865035 -241799318 + MLT2D LTR ERVL 121 277 -137 1680 153 36 19 chr1 866666 866973 -241797380 + AluJb SINE Alu 1 312 0 2474 47 0 0 chr1 867322 867620 -241796733 - AluSx SINE Alu -14 298 1 369 210 43 43 chr1 867726 867864 -241796489 + (CCCCG)n Simple_repeat Simple_repeat 4 141 0 1621 133 10 47 chr1 868718 869019 -241795334 + AluSx SINE Alu 1 290 -22 2328 51 10 3 chr1 869019 869313 -241795040 + AluY SINE Alu 1 296 -15 187 308 77 0 chr1 870344 870422 -241793931 + L2 LINE L2 2292 2375 -939 804 164 0 46 chr1 870878 871030 -241793323 + AluJo SINE Alu 1 145 -167 2369 66 0 10 chr1 871030 871331 -241793022 + AluY SINE Alu 1 298 -13 1220 172 48 99 chr1 871332 871646 -241792707 + AluJb SINE Alu 1 298 -14 1948 155 7 0 chr1 871646 871942 -241792411 + AluSx SINE Alu 1 298 -14 436 241 17 0 chr1 871942 872025 -241792328 + L1M4 LINE L1 5610 5697 -487 2096 118 3 3 chr1 872025 872321 -241792032 + AluSx SINE Alu 1 296 -16 436 241 17 0 chr1 872321 872353 -241792000 + L1M4 LINE L1 5697 5727 -457 1091 184 5 19 chr1 872354 872560 -241791793 + AluJb SINE Alu 83 285 -27 1006 169 0 6 chr1 872560 872770 -241791583 - AluSp SINE Alu 0 328 120 1450 114 5 0 chr1 872770 872971 -241791382 - AluSg/x SINE Alu -43 269 68 603 105 28 50 chr1 873073 873254 -241791099 + GA-rich Low_complexity Low_complexity 1 177 0 902 140 7 7 chr1 874379 874522 -241789831 - FRAM SINE Alu -30 146 4 544 236 55 83 chr1 874529 874949 -241789404 - Charlie2 DNA MER1_type -87 2775 2368 2377 73 0 3 chr1 874958 875260 -241789093 + AluY SINE Alu 6 306 -5 2306 68 0 40 chr1 875263 875584 -241788769 + AluY SINE Alu 4 311 0 2280 98 0 13 chr1 875586 875902 -241788451 + AluSx SINE Alu 1 312 0 2543 52 0 3 chr1 875920 876227 -241788126 + AluY SINE Alu 1 306 -5 2076 124 3 3 chr1 876515 876821 -241787532 - AluY SINE Alu -5 306 1 2305 71 0 3 chr1 876821 877115 -241787238 - AluY SINE Alu -18 293 1 2229 82 17 0 chr1 877115 877409 -241786944 - AluSx SINE Alu -13 299 1 1028 281 49 11 chr1 877412 877879 -241786474 - L1M4 LINE L1 -2685 3461 2977 418 235 10 0 chr1 878016 878114 -241786239 - MER81 DNA DNA -15 99 1 277 307 40 7 chr1 878258 878408 -241785945 + (TATG)n Simple_repeat Simple_repeat 4 158 0 225 395 0 0 chr1 878494 878646 -241785707 + (TG)n Simple_repeat Simple_repeat 2 153 0 266 312 52 0 chr1 878652 878806 -241785547 + (TACG)n Simple_repeat Simple_repeat 4 165 0 206 311 62 0 chr1 878783 878944 -241785409 + (TATG)n Simple_repeat Simple_repeat 4 174 0 * 265 391 0 0 chr1 878865 879044 -241785309 + (TG)n Simple_repeat Simple_repeat 2 180 0 218 318 53 7 chr1 879050 879201 -241785152 + (TACG)n Simple_repeat Simple_repeat 4 161 0 * 236 317 48 0 chr1 879178 879345 -241785008 + (TATG)n Simple_repeat Simple_repeat 4 178 0 202 348 17 0 chr1 879414 879532 -241784821 + (TATG)n Simple_repeat Simple_repeat 3 122 0 180 0 0 0 chr1 879797 879817 -241784536 + (CA)n Simple_repeat Simple_repeat 2 21 0 2394 93 3 0 chr1 879865 880177 -241784176 + AluSp SINE Alu 1 313 0 2393 91 0 0 chr1 880193 880502 -241783851 + AluSc SINE Alu 1 309 0 2023 134 0 10 chr1 880551 880858 -241783495 + AluJb SINE Alu 1 304 -8 275 237 99 30 chr1 881241 881372 -241782981 + L1MC5 LINE L1 7361 7500 -461 331 263 94 12 chr1 881390 881550 -241782803 + L1M4 LINE L1 4836 5008 -1138 409 278 3 0 chr1 881843 882453 -241781900 + (CA)n Simple_repeat Simple_repeat 1 612 0 230 228 0 11 chr1 882478 882570 -241781783 + (CA)n Simple_repeat Simple_repeat 1 91 0 335 340 0 0 chr1 883006 883156 -241781197 + (TG)n Simple_repeat Simple_repeat 1 150 0 820 117 0 83 chr1 883882 884027 -241780326 - FLAM_C SINE Alu 0 133 1 2197 87 3 7 chr1 884703 885001 -241779352 - AluSq SINE Alu -16 297 1 258 192 0 19 chr1 885003 885055 -241779298 + L3 LINE CR1 1369 1419 -158 1291 164 18 0 chr1 885644 885869 -241778484 + AluSq SINE Alu 3 231 -82 423 348 112 38 chr1 886655 887616 -241776737 - L1MEd LINE L1 -4863 1256 224 1709 132 16 42 chr1 888415 888725 -241775628 + AluJo SINE Alu 5 306 -6 333 339 52 64 chr1 889184 889417 -241774936 - L1MC4 LINE L1 0 8042 7813 294 242 99 0 chr1 891018 891109 -241773244 - MER91B DNA MER1_type -90 100 1 636 260 17 11 chr1 898021 898202 -241766151 - MER3 DNA MER1_type -27 182 1 1355 294 69 59 chr1 898291 898842 -241765511 - L1M3 LINE L1 -743 5472 4928 2272 91 0 3 chr1 898842 899140 -241765213 + AluSq SINE Alu 3 299 -14 1355 294 69 59 chr1 899140 899479 -241764874 - L1M3 LINE L1 -1287 4928 4605 1746 157 17 10 chr1 899479 899773 -241764580 + AluJo SINE Alu 1 296 -16 1355 294 69 59 chr1 899773 899835 -241764518 - L1M3 LINE L1 -1610 4605 4545 295 145 29 14 chr1 899835 899904 -241764449 + CT-rich Low_complexity Low_complexity 3 72 0 273 281 47 0 chr1 899918 900081 -241764272 - L1M3 LINE L1 -3921 2322 2163 1609 104 0 4 chr1 900184 900415 -241763938 + AluSq SINE Alu 1 230 -83 658 141 0 0 chr1 900556 900648 -241763705 - AluS SINE Alu -220 92 1 2484 237 60 50 chr1 900682 901073 -241763280 + L1ME1 LINE L1 4528 4914 -1252 1855 141 115 12 chr1 901073 901413 -241762940 + THE1C LTR MaLR 1 375 0 2484 237 60 50 chr1 901413 901802 -241762551 + L1ME1 LINE L1 4914 5298 -868 2250 91 0 13 chr1 901802 902100 -241762253 + AluSq SINE Alu 6 299 -14 2484 237 60 50 chr1 902100 902933 -241761420 + L1ME1 LINE L1 5298 6166 0 1863 146 17 3 chr1 902982 903270 -241761083 + AluSx SINE Alu 1 292 -20 363 152 0 43 chr1 903270 903362 -241760991 + GA-rich Low_complexity Low_complexity 1 88 0 808 100 5 58 chr1 903368 903558 -241760795 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1314 147 19 0 chr1 903646 903857 -241760496 + AluJb SINE Alu 97 311 -1 403 217 70 10 chr1 903876 903996 -241760357 + AluJo SINE Alu 1 112 -190 216 111 0 0 chr1 903996 904032 -241760321 + (TA)n Simple_repeat Simple_repeat 2 37 0 403 217 70 10 chr1 904032 904159 -241760194 + AluJo SINE Alu 112 295 -7 2221 111 0 0 chr1 904266 904563 -241759790 + AluSg SINE Alu 1 297 -13 324 318 16 24 chr1 906268 906394 -241757959 + (CACG)n Simple_repeat Simple_repeat 2 126 0 327 238 0 28 chr1 906399 906580 -241757773 + (CA)n Simple_repeat Simple_repeat 1 176 0 2184 121 0 0 chr1 906585 906892 -241757461 - AluJo SINE Alu -5 307 1 1501 135 9 4 chr1 907182 907412 -241756941 - AluJb SINE Alu -81 231 1 2261 82 3 0 chr1 907532 907825 -241756528 + AluSx SINE Alu 1 294 -18 885 261 123 23 chr1 908331 908722 -241755631 + MLT1D LTR MaLR 69 498 -7 31 44 0 0 chr1 910050 910095 -241754258 + AT_rich Low_complexity Low_complexity 1 45 0 2366 61 0 3 chr1 910109 910403 -241753950 - AluY SINE Alu -16 295 3 1724 123 0 73 chr1 911493 911807 -241752546 - AluJb SINE Alu 0 430 146 2088 102 0 39 chr1 911807 911942 -241752411 + AluSq SINE Alu 2 141 -172 2405 65 3 0 chr1 911942 912248 -241752105 + AluY SINE Alu 1 307 -4 2088 102 0 39 chr1 912248 912417 -241751936 + AluSq SINE Alu 141 294 -19 1724 123 0 73 chr1 912417 912550 -241751803 - AluJb SINE Alu -284 146 5 1502 192 20 3 chr1 914742 915034 -241749319 - AluJb SINE Alu -15 297 1 2288 95 3 0 chr1 915042 915346 -241749007 - AluSp SINE Alu -8 305 1 1886 124 6 43 chr1 915412 915555 -241748798 + AluSg SINE Alu 1 148 -162 2364 84 0 0 chr1 915555 915863 -241748490 + AluY SINE Alu 1 308 -3 1886 124 6 43 chr1 915863 916041 -241748312 + AluSg SINE Alu 148 310 0 2244 95 0 0 chr1 916056 916350 -241748003 + AluSg SINE Alu 1 294 -16 188 261 185 27 chr1 919292 919476 -241744877 - L2 LINE L2 -253 3060 2848 838 121 0 35 chr1 919562 919725 -241744628 + FLAM_C SINE Alu 8 143 0 846 251 121 9 chr1 919894 920277 -241744076 + L1MC4 LINE L1 6478 6936 -1090 200 163 0 112 chr1 921249 921347 -241743006 + C-rich Low_complexity Low_complexity 1 87 0 193 104 0 42 chr1 921701 921749 -241742604 + (CGG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr1 922471 922494 -241741859 + AT_rich Low_complexity Low_complexity 1 23 0 2230 71 3 26 chr1 922501 922810 -241741543 + AluY SINE Alu 1 302 -9 1916 121 0 20 chr1 923187 923484 -241740869 - AluSx SINE Alu -21 291 1 2483 55 0 7 chr1 923656 923964 -241740389 + AluY SINE Alu 1 306 -5 2278 101 0 0 chr1 924075 924383 -241739970 - AluSq SINE Alu -5 308 1 2175 90 0 3 chr1 924531 924831 -241739522 + AluY SINE Alu 1 299 -12 1241 142 5 5 chr1 925002 925199 -241739154 + AluSp SINE Alu 1 197 -116 348 43 0 0 chr1 925199 925246 -241739107 + AluSp SINE Alu 87 133 -170 1447 176 17 7 chr1 925251 925546 -241738807 + AluSp SINE Alu 3 300 -13 315 296 102 0 chr1 925857 925965 -241738388 + MIR SINE MIR 112 230 -32 1533 159 69 28 chr1 926205 926494 -241737859 - AluJb SINE Alu 0 312 12 2270 89 0 0 chr1 926580 926873 -241737480 - AluSg SINE Alu -17 293 1 245 375 120 27 chr1 927027 927057 -241737296 - L2 LINE L2 -4 3268 3242 1721 124 79 10 chr1 927057 927347 -241737006 - AluSg SINE Alu 0 310 1 245 375 120 27 chr1 927347 927617 -241736736 - L2 LINE L2 -30 3242 2940 206 320 120 0 chr1 927638 927713 -241736640 + L2 LINE L2 3187 3270 -2 1776 125 72 0 chr1 927814 928093 -241736260 + AluSx SINE Alu 1 299 -13 498 149 20 155 chr1 928818 928918 -241735435 + Charlie1a DNA MER1_type 1 76 -2685 2066 50 54 4 chr1 928918 929195 -241735158 - AluY SINE Alu -20 291 1 498 149 20 155 chr1 929195 929242 -241735111 + Charlie1a DNA MER1_type 76 128 -1327 1794 171 0 10 chr1 929281 929591 -241734762 + AluJb SINE Alu 1 307 -5 1323 221 81 23 chr1 929599 929783 -241734570 + Charlie1a DNA MER1_type 1040 1212 -1549 2380 75 3 0 chr1 929783 930089 -241734264 - AluY SINE Alu -4 307 1 1323 221 81 23 chr1 930089 930297 -241734056 + Charlie1a DNA MER1_type 1212 1455 0 288 307 0 0 chr1 930988 931076 -241733277 - L2 LINE L2 -285 3028 2941 348 300 100 12 chr1 931292 931452 -241732901 - MIR SINE MIR -5 257 84 377 301 59 27 chr1 931825 931876 -241732477 - L1ME4a LINE L1 0 6121 6073 891 130 0 36 chr1 931876 932014 -241732339 + AluJo SINE Alu 1 133 -169 377 301 59 27 chr1 932014 932148 -241732205 - L1ME4a LINE L1 -48 6073 5930 2267 90 7 0 chr1 932196 932495 -241731858 - AluSx SINE Alu -11 301 1 296 236 285 8 chr1 932629 932752 -241731601 + MIR SINE MIR 58 214 -48 481 208 178 10 chr1 932849 932950 -241731403 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 932994 933021 -241731332 + (TC)n Simple_repeat Simple_repeat 1 27 0 799 167 146 0 chr1 933061 933205 -241731148 + AluJo SINE Alu 134 298 -14 1213 205 161 27 chr1 933285 933689 -241730664 - MLT1C LTR MaLR -2 465 8 960 195 12 0 chr1 933841 934005 -241730348 + FRAM SINE Alu 1 166 0 1876 167 0 3 chr1 934021 934333 -241730020 + AluSx SINE Alu 1 311 -1 2062 132 84 0 chr1 934344 934655 -241729698 + MER1B DNA MER1_type 1 337 0 1906 123 3 48 chr1 934700 934881 -241729472 - AluSg SINE Alu -8 302 139 2006 116 7 13 chr1 934881 935191 -241729162 - AluSx SINE Alu -4 308 1 1906 123 3 48 chr1 935191 935325 -241729028 - AluSg SINE Alu -171 139 1 987 111 0 0 chr1 935689 935824 -241728529 - AluSg/x SINE Alu -23 287 153 402 136 0 0 chr1 935824 935883 -241728470 - AluS SINE Alu -248 61 3 573 312 110 18 chr1 935926 936307 -241728046 - MLT1H LTR MaLR -3 546 131 852 161 0 0 chr1 936314 936457 -241727896 + FLAM_C SINE Alu 1 143 0 245 268 0 0 chr1 936631 936687 -241727666 - L2 LINE L2 -9 3304 3249 329 478 25 76 chr1 937236 937550 -241726803 + AluSp SINE Alu 1 298 -5 2283 72 0 3 chr1 937621 937913 -241726440 - AluY SINE Alu -20 291 1 1726 117 23 75 chr1 938791 938980 -241725373 - AluSx SINE Alu -7 305 137 2410 77 0 0 chr1 938980 939291 -241725062 - AluY SINE Alu 0 311 1 1726 117 23 75 chr1 939291 939409 -241724944 - AluSx SINE Alu -175 137 14 1629 171 0 23 chr1 939678 939977 -241724376 + AluJo SINE Alu 1 292 -20 275 226 418 0 chr1 940110 940256 -241724097 + MER20 DNA MER1_type 6 212 -7 1477 163 42 54 chr1 940404 940735 -241723618 - L1MB5 LINE L1 -10 6164 5838 2247 86 0 16 chr1 940751 941055 -241723298 - AluY SINE Alu -11 300 2 915 81 89 0 chr1 941055 941179 -241723174 - AluSq/x SINE Alu -177 135 1 1291 173 28 4 chr1 941179 941428 -241722925 - L1MB5 LINE L1 -356 5824 5570 1839 118 36 4 chr1 941725 942004 -241722349 + AluSx SINE Alu 1 288 -24 1983 135 0 3 chr1 942015 942318 -241722035 + AluSc SINE Alu 1 302 -7 207 69 0 0 chr1 942645 942674 -241721679 + (TG)n Simple_repeat Simple_repeat 2 30 0 1970 123 0 3 chr1 942674 942958 -241721395 - AluSg SINE Alu -27 283 1 1228 141 0 5 chr1 942958 943150 -241721203 - AluSx SINE Alu -11 301 111 748 110 0 0 chr1 943230 943330 -241721023 - AluSx SINE Alu -210 102 3 1888 137 0 23 chr1 943341 943640 -241720713 - AluSx SINE Alu -20 292 1 628 252 0 0 chr1 944106 944229 -241720124 - FLAM_A SINE Alu -9 124 2 2380 84 0 0 chr1 944461 944769 -241719584 + AluY SINE Alu 1 308 -3 334 237 21 0 chr1 944845 944952 -241719401 + L1MC4 LINE L1 7885 8042 0 2255 97 0 0 chr1 944986 945284 -241719069 - AluSx SINE Alu -14 298 1 296 236 285 8 chr1 945418 945541 -241718812 + MIR SINE MIR 58 214 -48 481 208 178 10 chr1 945638 945739 -241718614 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 945783 945810 -241718543 + (TC)n Simple_repeat Simple_repeat 1 27 0 799 167 146 0 chr1 945850 945994 -241718359 + FRAM SINE Alu 1 162 -14 1213 205 161 27 chr1 946074 946478 -241717875 - MLT1C LTR MaLR -2 465 8 960 195 12 0 chr1 946630 946794 -241717559 + FRAM SINE Alu 1 166 0 1876 167 0 3 chr1 946810 947122 -241717231 + AluSx SINE Alu 1 311 -1 2062 132 84 0 chr1 947133 947444 -241716909 + MER1B DNA MER1_type 1 337 0 1906 123 3 48 chr1 947489 947670 -241716683 - AluSg SINE Alu -8 302 139 2006 116 7 13 chr1 947670 947980 -241716373 - AluSx SINE Alu -4 308 1 1906 123 3 48 chr1 947980 948114 -241716239 - AluSg SINE Alu -171 139 1 987 111 0 0 chr1 948478 948613 -241715740 - AluSg/x SINE Alu -23 287 153 402 136 0 0 chr1 948613 948672 -241715681 - AluS SINE Alu -250 61 3 573 312 110 18 chr1 948715 949096 -241715257 - MLT1H LTR MaLR -3 546 131 852 161 0 0 chr1 949103 949246 -241715107 + FLAM_C SINE Alu 1 143 0 245 268 0 0 chr1 949420 949476 -241714877 - L2 LINE L2 -9 3263 3208 374 331 130 30 chr1 949935 950025 -241714328 - L2 LINE L2 -529 2785 2705 1494 184 85 0 chr1 950025 950308 -241714045 + AluJo SINE Alu 1 307 -5 374 331 130 30 chr1 950308 950586 -241713767 - L2 LINE L2 -609 2705 2380 1814 134 0 28 chr1 950850 951133 -241713220 - AluSx SINE Alu -37 275 1 309 290 98 33 chr1 951142 951346 -241713007 - L2 LINE L2 -1390 1924 1704 1803 112 40 11 chr1 951346 951623 -241712730 - AluSx SINE Alu 0 312 28 1226 166 86 43 chr1 951848 952126 -241712227 + AluJo SINE Alu 22 311 -1 2092 124 7 0 chr1 952142 952441 -241711912 + AluSx SINE Alu 1 301 -11 2217 86 3 13 chr1 953088 953401 -241710952 - AluY SINE Alu -1 310 1 2194 93 7 7 chr1 953502 953803 -241710550 - AluSg1 SINE Alu -8 301 1 2009 117 23 3 chr1 953834 954133 -241710220 + AluSq SINE Alu 1 305 -8 303 310 103 13 chr1 954338 954493 -241709860 + L1MC4a LINE L1 4780 4948 -1198 555 150 97 9 chr1 954843 954956 -241709397 + L2 LINE L2 3188 3310 -3 1191 60 142 87 chr1 954962 955033 -241709320 - MER30 DNA MER1_type 0 230 164 2083 98 21 0 chr1 955033 955319 -241709034 - AluSq SINE Alu -21 292 1 1191 60 142 87 chr1 955319 955330 -241709023 - MER30 DNA MER1_type -66 164 155 2326 76 0 0 chr1 955330 955631 -241708722 - AluY SINE Alu -10 301 1 1191 60 142 87 chr1 955631 955765 -241708588 - MER30 DNA MER1_type -75 155 1 315 287 74 0 chr1 955769 955891 -241708462 + L1MC4a LINE L1 5736 5866 -1942 1979 117 23 7 chr1 956064 956364 -241707989 + AluSq SINE Alu 1 305 -8 2087 97 0 0 chr1 956710 956988 -241707365 - AluY SINE Alu -22 289 12 2313 84 0 0 chr1 957015 957323 -241707030 - AluY SINE Alu -3 308 1 2100 93 26 10 chr1 957958 958260 -241706093 - AluSg1 SINE Alu -1 308 2 549 176 213 0 chr1 958277 958385 -241705968 - FLAM_C SINE Alu -2 131 1 1587 165 30 3 chr1 959543 959840 -241704513 + AluJb SINE Alu 1 305 -7 1213 154 45 103 chr1 960072 960383 -241703970 - AluJo SINE Alu -19 293 1 513 181 86 0 chr1 960393 960509 -241703844 - L1MC4 LINE L1 -480 7562 7437 207 0 0 0 chr1 960821 960844 -241703509 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1054 215 70 37 chr1 960857 961127 -241703226 - AluJo SINE Alu -33 279 1 1888 104 0 4 chr1 961173 961442 -241702911 - AluSx SINE Alu -10 302 35 282 98 0 44 chr1 961578 961630 -241702723 - Alu SINE Alu -9 293 251 1255 98 0 0 chr1 961646 961820 -241702533 - AluY SINE Alu -11 300 127 2214 142 6 0 chr1 961858 962211 -241702142 - L1PA16 LINE L1 -6 6160 5806 1287 47 0 35 chr1 962236 962406 -241701947 - L1PA5 LINE L1 -4 6150 5987 228 67 0 0 chr1 962406 962436 -241701917 + L1P LINE L1 4944 4973 -1173 926 58 0 50 chr1 962436 962575 -241701778 - AluY SINE Alu -179 132 1 261 270 0 16 chr1 962577 962641 -241701712 + C-rich Low_complexity Low_complexity 1 62 0 346 167 3 40 chr1 962800 962900 -241701453 - AluJo SINE Alu -167 135 70 * 1335 226 101 48 chr1 962898 962984 -241701369 - MER119 DNA MER1_type -93 490 410 2031 130 3 0 chr1 962984 963285 -241701068 + AluSx SINE Alu 5 306 -6 1335 226 101 48 chr1 963285 963635 -241700718 - MER119 DNA MER1_type -173 410 31 1152 140 0 121 chr1 964367 964632 -241699721 + Tigger7 DNA MER2_type 2258 2490 -1 2164 101 0 0 chr1 965578 965876 -241698477 + AluSc SINE Alu 1 298 -11 836 118 0 52 chr1 965878 966013 -241698340 + FLAM_C SINE Alu 3 130 -3 1269 194 15 23 chr1 966019 966282 -241698071 + AluJo SINE Alu 38 298 -14 208 233 256 0 chr1 966283 966373 -241697980 - L2 LINE L2 -1 3271 3159 2343 43 7 16 chr1 966580 966884 -241697469 - AluY SINE Alu -10 301 1 1884 139 13 7 chr1 966954 967131 -241697222 - AluSx SINE Alu -2 310 129 2160 96 0 0 chr1 967131 967423 -241696930 - AluSg SINE Alu -16 294 3 1884 139 13 7 chr1 967423 967547 -241696806 - AluSx SINE Alu -183 129 7 667 180 0 43 chr1 967547 967678 -241696675 - FLAM_A SINE Alu -175 127 1 540 326 66 30 chr1 968014 968318 -241696035 + L2 LINE L2 2999 3313 0 299 324 111 28 chr1 968933 969186 -241695167 - L2 LINE L2 -481 2833 2560 1253 147 139 48 chr1 969603 969774 -241694579 - AluJo SINE Alu -3 299 92 2203 72 0 7 chr1 969774 970065 -241694288 + AluY SINE Alu 1 289 -22 1253 147 139 48 chr1 970065 970166 -241694187 - AluJo SINE Alu -210 92 2 2188 97 3 0 chr1 970244 970542 -241693811 - AluSp SINE Alu -14 299 1 31 0 0 0 chr1 970709 970740 -241693613 + AT_rich Low_complexity Low_complexity 1 31 0 1772 74 100 41 chr1 970745 970872 -241693481 - AluSg SINE Alu -25 285 167 2323 76 3 3 chr1 970872 971175 -241693178 - AluSp SINE Alu -9 304 2 1772 74 100 41 chr1 971175 971316 -241693037 - AluSg SINE Alu -143 167 1 539 242 175 48 chr1 971382 971865 -241692488 + L1MCc LINE L1 1169 1716 -4889 2242 77 0 7 chr1 971871 972171 -241692182 + AluSp SINE Alu 1 298 -15 1055 120 25 0 chr1 972171 972329 -241692024 + AluSg/x SINE Alu 134 295 -17 649 260 116 8 chr1 972341 972591 -241691762 + L1MCc LINE L1 1735 2011 -4930 1569 177 21 0 chr1 972603 972885 -241691468 + AluJb SINE Alu 1 288 -24 398 177 76 0 chr1 972885 972964 -241691389 + L1MCc LINE L1 2276 2360 -4581 725 273 114 63 chr1 973011 973422 -241690931 - MER21B LTR ERV1 -407 456 25 9541 132 62 13 chr1 973501 973911 -241690442 - Tigger2 DNA MER2_type -4 2714 2326 1809 119 58 3 chr1 973911 974206 -241690147 - AluSq SINE Alu -2 311 1 9541 132 62 13 chr1 974206 975444 -241688909 - Tigger2 DNA MER2_type -392 2326 984 1048 170 22 27 chr1 975453 975676 -241688677 + AluJo SINE Alu 10 231 -81 189 0 0 0 chr1 975714 975735 -241688618 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1942 127 0 0 chr1 975735 976019 -241688334 - AluSx SINE Alu -28 284 1 229 196 78 0 chr1 976024 976075 -241688278 - L1MC4 LINE L1 -891 7151 7097 501 116 0 0 chr1 976176 976245 -241688108 - AluS SINE Alu -224 89 21 1777 147 6 22 chr1 976295 976608 -241687745 + AluJb SINE Alu 3 310 -2 238 188 171 145 chr1 978374 978608 -241685745 + L1MC5 LINE L1 7277 7516 -445 2333 80 0 0 chr1 979184 979484 -241684869 - AluY SINE Alu -11 300 1 595 305 52 17 chr1 979744 979993 -241684360 + MIR SINE MIR 10 261 -1 1105 200 137 46 chr1 980194 980307 -241684046 - L1ME LINE L1 -476 5690 5589 1464 169 6 66 chr1 980307 980639 -241683714 + AluJo SINE Alu 1 312 0 1105 200 137 46 chr1 980639 980904 -241683449 - L1ME LINE L1 -577 5589 5349 1555 155 32 48 chr1 980904 981076 -241683277 - AluJb SINE Alu -8 304 138 1920 141 7 0 chr1 981076 981367 -241682986 - AluSx SINE Alu -19 293 1 1555 155 32 48 chr1 981367 981503 -241682850 - AluJb SINE Alu -174 138 1 1105 200 137 46 chr1 981503 981772 -241682581 - L1ME LINE L1 -817 5349 5106 2329 81 0 0 chr1 981772 982070 -241682283 - AluY SINE Alu -13 298 1 1904 117 13 23 chr1 982070 982377 -241681976 - AluSc SINE Alu -5 304 1 1105 200 137 46 chr1 982377 982434 -241681919 - L1ME LINE L1 -1059 5107 4923 2189 98 0 0 chr1 982439 982735 -241681618 + AluSx SINE Alu 3 298 -14 358 177 42 21 chr1 982780 982876 -241681477 - L1MC4 LINE L1 0 8042 7945 2360 84 0 0 chr1 982952 983260 -241681093 - AluY SINE Alu -3 308 1 601 236 0 16 chr1 983492 983615 -241680738 + FLAM_A SINE Alu 2 122 -11 1864 137 0 23 chr1 984081 984380 -241679973 + AluSx SINE Alu 1 292 -20 742 110 0 0 chr1 984391 984491 -241679862 + AluSx SINE Alu 3 102 -210 1207 141 0 5 chr1 984571 984763 -241679590 + AluSx SINE Alu 111 301 -11 1950 123 0 3 chr1 984763 985047 -241679306 + AluSg SINE Alu 1 283 -27 207 69 0 0 chr1 985047 985076 -241679277 + (CA)n Simple_repeat Simple_repeat 2 30 0 1959 129 0 3 chr1 985412 985706 -241678647 - AluSc SINE Alu -16 293 1 1821 118 36 4 chr1 985717 985996 -241678357 - AluSx SINE Alu -24 288 1 1343 141 48 20 chr1 986293 986542 -241677811 + L1MB5 LINE L1 5570 5825 -349 909 81 89 0 chr1 986542 986666 -241677687 + AluSq/x SINE Alu 1 135 -178 2226 86 0 16 chr1 986666 986970 -241677383 + AluY SINE Alu 2 300 -11 1551 163 42 54 chr1 986986 987317 -241677036 + L1MB5 LINE L1 5838 6164 -10 277 226 418 0 chr1 987465 987611 -241676742 - MER20 DNA MER1_type -7 212 6 1578 169 0 24 chr1 987747 988043 -241676310 - AluJo SINE Alu -23 289 1 1693 114 23 75 chr1 988312 988430 -241675923 + AluSx SINE Alu 14 137 -175 2390 77 0 0 chr1 988430 988741 -241675612 + AluY SINE Alu 1 311 0 1693 114 23 75 chr1 988741 988928 -241675425 + AluSx SINE Alu 137 303 -9 2373 52 0 0 chr1 989808 990132 -241674221 + AluY SINE Alu 1 324 0 1111 241 130 26 chr1 990151 990338 -241674015 + L1MC4 LINE L1 6430 6596 -1289 438 20 0 0 chr1 990338 990389 -241673964 + (CA)n Simple_repeat Simple_repeat 1 51 0 1111 241 130 26 chr1 990389 990798 -241673555 + L1MC4 LINE L1 6596 7151 -734 1948 123 0 0 chr1 990801 991085 -241673268 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr1 991085 991106 -241673247 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 1048 170 22 27 chr1 991144 991367 -241672986 - AluJo SINE Alu -81 231 10 9557 131 62 13 chr1 991376 992614 -241671739 + Tigger2 DNA MER2_type 984 2326 -392 1809 119 58 3 chr1 992614 992909 -241671444 + AluSq SINE Alu 1 311 -2 9557 131 62 13 chr1 992909 993319 -241671034 + Tigger2 DNA MER2_type 2326 2714 -4 725 273 114 63 chr1 993398 993809 -241670544 + MER21B LTR ERV1 25 456 -407 398 177 76 0 chr1 993856 993935 -241670418 - L1MCc LINE L1 -4581 2360 2276 1569 177 21 0 chr1 993935 994217 -241670136 - AluJb SINE Alu -24 288 1 649 260 116 8 chr1 994229 994479 -241669874 - L1MCc LINE L1 -4930 2011 1735 1055 120 25 0 chr1 994491 994649 -241669704 - AluSg/x SINE Alu -17 293 132 2242 77 0 7 chr1 994649 994949 -241669404 - AluSp SINE Alu -15 298 1 539 242 175 48 chr1 994955 995438 -241668915 - L1MCc LINE L1 -4889 1534 1169 1171 57 0 0 chr1 995504 995645 -241668708 + AluSg1 SINE Alu 1 141 -168 1988 92 7 17 chr1 995645 995938 -241668415 + AluSp SINE Alu 2 291 -22 1016 148 0 0 chr1 996052 996207 -241668146 - FRAM SINE Alu -26 150 1 2032 120 0 3 chr1 996219 996511 -241667842 - AluSx SINE Alu -21 291 1 1166 170 74 48 chr1 996541 996811 -241667542 + AluJo SINE Alu 1 277 -35 2180 53 42 3 chr1 996844 997127 -241667226 + AluY SINE Alu 1 294 -17 2226 96 0 3 chr1 997353 997654 -241666699 + AluSq SINE Alu 1 300 -13 2045 123 7 0 chr1 998037 998339 -241666014 + AluSq SINE Alu 1 304 -9 309 51 0 0 chr1 998478 998517 -241665836 + (TG)n Simple_repeat Simple_repeat 2 40 0 550 208 57 0 chr1 998519 998625 -241665728 - FLAM_C SINE Alu -30 113 2 2149 102 0 0 chr1 999060 999353 -241665000 - AluSp SINE Alu -20 293 1 2166 120 0 0 chr1 1000957 1001257 -241663096 - AluSx SINE Alu -12 300 1 22 35 0 0 chr1 1001394 1001423 -241662930 + AT_rich Low_complexity Low_complexity 1 29 0 2249 71 0 3 chr1 1001508 1001805 -241662548 - AluY SINE Alu -11 300 5 1825 132 14 7 chr1 1002517 1002813 -241661540 + AluSx SINE Alu 1 298 -14 624 100 100 20 chr1 1002941 1003041 -241661312 - AluSg/x SINE Alu -22 290 183 823 178 92 12 chr1 1003373 1003536 -241660817 + AluJb SINE Alu 136 311 -1 2387 65 7 0 chr1 1004124 1004431 -241659922 - AluY SINE Alu -2 309 1 2090 59 3 56 chr1 1004770 1005094 -241659259 + AluY SINE Alu 1 307 -4 647 241 0 0 chr1 1005101 1005234 -241659119 + FLAM_C SINE Alu 1 133 0 308 159 55 131 chr1 1005234 1005271 -241659082 - Charlie5 DNA MER1_type -81 2543 2505 1312 162 170 4 chr1 1005271 1005530 -241658823 - AluJb SINE Alu 0 302 1 308 159 55 131 chr1 1005530 1005637 -241658716 - Charlie5 DNA MER1_type -119 2505 2410 2091 124 0 3 chr1 1007005 1007311 -241657042 - AluSx SINE Alu -7 305 1 1637 172 0 25 chr1 1007543 1007863 -241656490 + AluJb SINE Alu 1 312 0 2002 102 7 10 chr1 1007865 1008160 -241656193 + AluSx SINE Alu 1 294 -18 990 112 0 71 chr1 1008011 1008181 -241656172 + AluSg/x SINE Alu 147 304 -6 2483 93 0 0 chr1 1008493 1008805 -241655548 - AluSx SINE Alu 0 312 1 937 102 31 0 chr1 1008822 1008950 -241655403 - AluJo SINE Alu -176 136 5 216 0 0 0 chr1 1009056 1009080 -241655273 + (T)n Simple_repeat Simple_repeat 1 24 0 2288 226 46 20 chr1 1009873 1010457 -241653896 + L1MB5 LINE L1 5576 6174 0 2257 80 3 11 chr1 1010466 1010753 -241653600 + AluSx SINE Alu 28 312 0 242 199 117 0 chr1 1011914 1011988 -241652365 + MIR SINE MIR 45 128 -80 2397 90 3 3 chr1 1012245 1012556 -241651797 - AluY SINE Alu 0 311 1 1706 173 20 10 chr1 1012559 1012860 -241651493 - AluJo SINE Alu 0 312 9 1045 220 107 0 chr1 1013272 1013563 -241650790 + L1MA7 LINE L1 5958 6279 -12 1616 204 0 25 chr1 1013596 1013910 -241650443 + AluJo SINE Alu 3 308 -4 25 31 0 0 chr1 1013937 1013969 -241650384 + AT_rich Low_complexity Low_complexity 1 32 0 1545 126 165 11 chr1 1013974 1014235 -241650118 + AluSx SINE Alu 1 301 -11 282 56 0 0 chr1 1014955 1014991 -241649362 + (TG)n Simple_repeat Simple_repeat 2 37 0 1110 75 43 0 chr1 1015032 1015193 -241649160 - L1PA6 LINE L1 -1 6153 5986 2539 56 0 13 chr1 1015298 1015601 -241648752 - AluY SINE Alu -12 299 1 2341 83 7 7 chr1 1015672 1015972 -241648381 - AluY SINE Alu -11 300 1 2273 121 0 7 chr1 1016476 1016781 -241647572 + AluSx SINE Alu 1 303 -9 186 43 0 0 chr1 1016781 1016804 -241647549 + (TA)n Simple_repeat Simple_repeat 1 23 0 313 175 0 0 chr1 1016818 1016875 -241647478 + Alu SINE Alu 240 296 -4 2300 125 0 0 chr1 1016896 1017201 -241647152 + AluSx SINE Alu 1 305 -7 1830 142 0 86 chr1 1017305 1017499 -241646854 - AluJo SINE Alu -7 305 149 2215 76 40 0 chr1 1017499 1017775 -241646578 + AluY SINE Alu 1 287 -24 1830 142 0 86 chr1 1017775 1017905 -241646448 - AluJo SINE Alu -163 149 9 182 310 28 42 chr1 1018199 1018270 -241646083 + L3b LINE CR1 1479 1548 -35 1582 119 169 4 chr1 1018413 1018674 -241645679 + AluSx SINE Alu 1 304 -8 2180 112 0 0 chr1 1018925 1019235 -241645118 + AluSx SINE Alu 6 315 0 2173 105 14 7 chr1 1019558 1019853 -241644500 + AluSp SINE Alu 1 297 -16 2521 71 0 7 chr1 1019855 1020165 -241644188 + AluY SINE Alu 1 308 -3 1886 136 20 33 chr1 1020370 1020671 -241643682 - AluSg SINE Alu 0 310 14 2216 141 0 0 chr1 1020867 1021172 -241643181 - AluSx SINE Alu -7 305 1 2366 92 0 3 chr1 1022022 1022316 -241642037 + AluSq SINE Alu 1 293 -20 2142 110 3 10 chr1 1022387 1022687 -241641666 - AluSq SINE Alu -15 298 1 2315 101 0 7 chr1 1022689 1022986 -241641367 - AluSx SINE Alu -17 295 1 21 0 0 0 chr1 1023533 1023554 -241640799 + AT_rich Low_complexity Low_complexity 1 21 0 2406 67 0 20 chr1 1023554 1023852 -241640501 - AluY SINE Alu -19 292 1 2319 123 0 0 chr1 1023852 1024162 -241640191 - AluSg SINE Alu 0 310 1 1377 193 64 0 chr1 1024283 1024547 -241639806 + AluJo SINE Alu 2 282 -30 400 91 0 0 chr1 1024875 1024930 -241639423 - Alu SINE Alu -253 56 2 2315 101 0 7 chr1 1024933 1025230 -241639123 - AluSx SINE Alu -17 295 1 21 0 0 0 chr1 1025777 1025798 -241638555 + AT_rich Low_complexity Low_complexity 1 21 0 2406 67 0 20 chr1 1025798 1026096 -241638257 - AluY SINE Alu -19 292 1 2412 107 0 3 chr1 1026096 1026406 -241637947 - AluSc SINE Alu 0 309 1 2027 95 64 18 chr1 1026902 1027185 -241637168 + AluSx SINE Alu 1 296 -16 1002 201 14 14 chr1 1027404 1027623 -241636730 + MER47A DNA MER2_type 28 246 -120 181 250 0 23 chr1 1027777 1027821 -241636532 + MIR SINE MIR 13 55 -207 261 248 122 40 chr1 1028596 1028714 -241635639 + L1MC/D LINE L1 5688 5810 -311 2160 113 7 0 chr1 1028864 1029155 -241635198 - AluSx SINE Alu -19 293 1 1344 143 10 0 chr1 1030130 1030333 -241634020 - AluSq SINE Alu -22 291 87 2532 41 7 3 chr1 1030344 1030638 -241633715 - AluY SINE Alu -16 295 1 1189 276 111 54 chr1 1031024 1032184 -241632169 + L1ME LINE L1 47 1269 -4811 516 330 44 66 chr1 1032201 1032452 -241631901 + L1ME LINE L1 1442 1697 -4564 2135 122 10 7 chr1 1032452 1032746 -241631607 - AluSx SINE Alu -17 295 1 516 330 44 66 chr1 1032746 1033084 -241631269 + L1ME LINE L1 1697 2018 -4243 1144 242 129 27 chr1 1033321 1033904 -241630449 + L1ME LINE L1 2253 2894 -3186 1640 103 23 0 chr1 1033904 1034118 -241630235 + AluSx SINE Alu 1 219 -93 414 200 61 17 chr1 1034331 1034446 -241629907 - L1ME LINE L1 -4700 1561 1442 1197 276 111 45 chr1 1034463 1035624 -241628729 - L1ME LINE L1 -4811 1269 47 2215 84 10 14 chr1 1036010 1036307 -241628046 + AluSx SINE Alu 1 296 -16 1344 143 10 0 chr1 1036318 1036521 -241627832 + AluSq SINE Alu 87 291 -22 2160 113 7 0 chr1 1037496 1037787 -241626566 + AluSx SINE Alu 1 293 -19 261 248 122 40 chr1 1037937 1038055 -241626298 - L1MC/D LINE L1 -311 5810 5688 181 250 0 23 chr1 1038830 1038874 -241625479 - MIR SINE MIR -207 55 13 1002 201 14 14 chr1 1039028 1039247 -241625106 - MER47A DNA MER2_type -120 246 28 2027 95 64 18 chr1 1039466 1039749 -241624604 - AluSx SINE Alu -16 296 1 2337 92 3 0 chr1 1040245 1040529 -241623824 + AluSc SINE Alu 1 285 -24 717 92 64 0 chr1 1040906 1041015 -241623338 - AluSq SINE Alu -101 212 97 2185 122 7 0 chr1 1042155 1042449 -241621904 - AluSq SINE Alu -17 296 1 2189 121 0 7 chr1 1042511 1042817 -241621536 - AluSc SINE Alu -5 304 1 2622 50 0 10 chr1 1043758 1044060 -241620293 + AluSp SINE Alu 1 299 -14 2356 86 3 10 chr1 1045521 1045822 -241618531 - AluSp SINE Alu -14 299 1 2148 127 3 0 chr1 1047180 1047480 -241616873 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1049460 1049496 -241614857 + GA-rich Low_complexity Low_complexity 5 41 0 1261 98 11 6 chr1 1050493 1050667 -241613686 + AluY SINE Alu 122 296 -15 1226 124 0 0 chr1 1050704 1050873 -241613480 - AluSg/x SINE Alu -10 302 134 2403 79 7 7 chr1 1050873 1051177 -241613176 - AluSq SINE Alu -9 304 1 2257 82 14 0 chr1 1051192 1051485 -241612868 - AluY SINE Alu -14 297 1 23 0 0 0 chr1 1051963 1051986 -241612367 + AT_rich Low_complexity Low_complexity 1 23 0 376 219 42 0 chr1 1053079 1053175 -241611178 + MIR SINE MIR 60 159 -103 2127 103 11 4 chr1 1053182 1053463 -241610890 + AluSx SINE Alu 1 283 -29 189 292 14 0 chr1 1053529 1053601 -241610752 + L2 LINE L2 2893 2965 -349 201 240 135 21 chr1 1053667 1053763 -241610590 + L2 LINE L2 3167 3273 -40 256 209 121 0 chr1 1054192 1054283 -241610070 - MER69 DNA AcHobo -3 2523 2422 1405 181 59 28 chr1 1055438 1055540 -241608813 + AluJb SINE Alu 1 98 -214 225 0 0 0 chr1 1055540 1055565 -241608788 + (CA)n Simple_repeat Simple_repeat 2 26 0 1405 181 59 28 chr1 1055565 1055750 -241608603 + AluJb SINE Alu 98 297 -15 232 274 8 43 chr1 1056557 1056674 -241607679 + C-rich Low_complexity Low_complexity 6 118 0 233 217 28 38 chr1 1056789 1056895 -241607458 + (CGG)n Simple_repeat Simple_repeat 1 105 0 1572 204 0 4 chr1 1058152 1058427 -241605926 - AluJo SINE Alu -27 285 12 2442 75 3 0 chr1 1058438 1058731 -241605622 - AluSg SINE Alu -8 302 9 344 300 10 46 chr1 1059881 1060058 -241604295 - L1MC/D LINE L1 -2443 5365 5263 2147 97 0 10 chr1 1060108 1060407 -241603946 - AluSg SINE Alu -14 296 1 283 119 25 4 chr1 1060543 1060612 -241603741 + Alu SINE Alu 1 53 -250 289 77 19 0 chr1 1060619 1060671 -241603682 + Alu SINE Alu 1 53 -250 2038 81 6 78 chr1 1060679 1060999 -241603354 + AluSp SINE Alu 1 297 -16 342 341 65 22 chr1 1061007 1061145 -241603208 - L1MCa LINE L1 -4334 2092 1949 1487 204 48 0 chr1 1061198 1061467 -241602886 + AluJo SINE Alu 1 282 -30 486 0 0 0 chr1 1061502 1061556 -241602797 + (CA)n Simple_repeat Simple_repeat 1 54 0 819 151 0 22 chr1 1061625 1061764 -241602589 - AluJo SINE Alu -176 136 1 593 135 69 129 chr1 1061767 1061792 -241602561 - L1MD3 LINE L1 -7 7988 7963 2219 100 0 3 chr1 1061792 1062092 -241602261 + AluSq SINE Alu 1 299 -14 593 135 69 129 chr1 1062092 1062172 -241602181 - L1MD3 LINE L1 -32 7963 7880 2356 76 0 3 chr1 1062172 1062475 -241601878 - AluSp SINE Alu -11 302 1 593 135 69 129 chr1 1062475 1062654 -241601699 - L1MD3 LINE L1 -115 7880 6069 666 102 0 0 chr1 1062654 1062742 -241601611 - AluJ/FLAM SINE Alu -224 88 1 2077 230 56 112 chr1 1062745 1062769 -241601584 - L1MC/D LINE L1 -1016 5130 5106 1735 191 3 3 chr1 1062769 1063072 -241601281 + AluJb SINE Alu 1 303 -9 2077 230 56 112 chr1 1063072 1063124 -241601229 - L1MC/D LINE L1 -1040 5106 5053 1939 147 3 7 chr1 1063124 1063430 -241600923 + AluJb SINE Alu 1 305 -7 2077 230 56 112 chr1 1063430 1064176 -241600177 - L1MC/D LINE L1 -1093 5053 4267 1867 128 38 7 chr1 1064176 1064466 -241599887 - AluSq SINE Alu -14 299 1 1707 84 0 0 chr1 1064474 1064713 -241599640 - AluY SINE Alu 0 308 70 2077 230 56 112 chr1 1064713 1065009 -241599344 - L1MC/D LINE L1 -1886 4260 4068 1088 141 5 40 chr1 1065029 1065228 -241599125 - AluSg/x SINE Alu 0 312 121 315 0 0 0 chr1 1065228 1065263 -241599090 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 1135 143 6 6 chr1 1065263 1065438 -241598915 - AluSx SINE Alu -137 175 1 2055 139 10 0 chr1 1065475 1065654 -241598699 - AluSx SINE Alu 0 312 127 2191 102 0 13 chr1 1065654 1065968 -241598385 - AluSx SINE Alu -2 310 1 2055 139 10 0 chr1 1065968 1066097 -241598256 - AluSx SINE Alu -185 127 1 516 296 31 6 chr1 1066144 1066306 -241598047 - MER5B DNA MER1_type -9 169 4 744 233 42 108 chr1 1066415 1066666 -241597687 - MLT1B LTR MaLR 0 626 360 1413 180 19 64 chr1 1066666 1066977 -241597376 - AluJo SINE Alu -15 297 1 744 233 42 108 chr1 1066977 1067038 -241597315 - MLT1B LTR MaLR -266 360 297 2261 93 7 0 chr1 1067038 1067338 -241597015 - AluSq SINE Alu -7 306 5 744 233 42 108 chr1 1067338 1067417 -241596936 - MLT1B LTR MaLR -329 297 22 854 167 0 0 chr1 1067420 1067552 -241596801 + FLAM_C SINE Alu 2 133 0 2139 111 0 7 chr1 1068016 1068313 -241596040 + AluSx SINE Alu 1 295 -17 1113 168 0 25 chr1 1068323 1068520 -241595833 + AluJo SINE Alu 1 192 -120 189 171 0 0 chr1 1068529 1068564 -241595789 + A-rich Low_complexity Low_complexity 1 35 0 1938 76 4 19 chr1 1068792 1069055 -241595298 - AluSp SINE Alu 0 313 55 823 153 56 7 chr1 1069103 1069247 -241595106 - AluJb SINE Alu -161 151 1 1957 116 25 18 chr1 1069318 1069603 -241594750 - AluSq SINE Alu -26 287 1 29 47 0 0 chr1 1069742 1069785 -241594568 + AT_rich Low_complexity Low_complexity 1 43 0 2200 90 3 0 chr1 1070324 1070613 -241593740 - AluSx SINE Alu -22 290 1 2385 90 0 0 chr1 1071586 1071896 -241592457 - AluSx SINE Alu -2 310 1 1051 60 8 8 chr1 1071896 1072030 -241592323 - AluY SINE Alu -177 134 1 321 26 0 0 chr1 1072435 1072473 -241591880 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1925 136 0 3 chr1 1072473 1072759 -241591594 - AluSq SINE Alu -28 285 1 1571 181 14 10 chr1 1073807 1073942 -241590411 + AluJb SINE Alu 1 134 -178 2133 105 0 3 chr1 1073942 1074237 -241590116 + AluSg1 SINE Alu 1 294 -15 1571 181 14 10 chr1 1074237 1074393 -241589960 + AluJb SINE Alu 134 293 -19 410 264 86 0 chr1 1078205 1078345 -241586008 - MSTD LTR MaLR 0 396 245 324 296 50 0 chr1 1078382 1078524 -241585829 - MSTC LTR MaLR -243 153 6 2304 75 3 3 chr1 1080114 1080409 -241583944 + AluSc SINE Alu 1 295 -14 252 0 0 0 chr1 1082296 1082324 -241582029 + (GGA)n Simple_repeat Simple_repeat 2 29 0 203 188 21 0 chr1 1085562 1085610 -241578743 + (CA)n Simple_repeat Simple_repeat 2 50 0 218 132 19 0 chr1 1085648 1085701 -241578652 + (CA)n Simple_repeat Simple_repeat 1 54 0 358 314 128 16 chr1 1086649 1086837 -241577516 + L1ME LINE L1 5265 5473 -648 554 216 204 55 chr1 1086841 1087096 -241577257 + AluJo SINE Alu 5 297 -5 2229 84 0 7 chr1 1087144 1087440 -241576913 + AluY SINE Alu 1 294 -17 2126 105 0 10 chr1 1087440 1087735 -241576618 + AluSg SINE Alu 1 292 -18 2201 77 10 16 chr1 1087963 1088273 -241576080 - AluSg SINE Alu -2 308 1 26 0 0 0 chr1 1088508 1088534 -241575819 + GC_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr1 1089037 1089057 -241575296 + (A)n Simple_repeat Simple_repeat 1 20 0 200 136 0 68 chr1 1089788 1089847 -241574506 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 862 270 79 41 chr1 1090599 1091018 -241573335 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1091070 1091173 -241573180 + AluSp/q SINE Alu 193 295 -18 503 219 164 0 chr1 1091174 1091195 -241573158 - L1M4 LINE L1 -786 5360 5344 2261 92 13 0 chr1 1091195 1091501 -241572852 - AluSx SINE Alu -2 310 1 503 219 164 0 chr1 1091501 1091625 -241572728 - L1M4 LINE L1 -802 5344 5191 216 158 0 0 chr1 1091629 1091667 -241572686 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 2134 110 3 0 chr1 1091667 1091958 -241572395 - AluSp SINE Alu -9 304 13 2172 122 0 0 chr1 1091967 1092261 -241572092 - AluSx SINE Alu -18 294 1 185 277 0 0 chr1 1092454 1092501 -241571852 + MIR SINE MIR 40 86 -176 1873 133 34 0 chr1 1092779 1093072 -241571281 - AluSx SINE Alu -9 303 1 2269 82 0 22 chr1 1093084 1093401 -241570952 - AluY SINE Alu -1 310 1 2001 118 17 0 chr1 1093678 1093966 -241570387 - AluSg SINE Alu -17 293 1 186 43 0 0 chr1 1093971 1093994 -241570359 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 288 272 22 11 chr1 1094018 1094110 -241570243 - L1MC4a LINE L1 -1280 6528 6436 1151 103 23 23 chr1 1094134 1094150 -241570203 + AluSg/x SINE Alu 121 136 -176 2033 118 10 3 chr1 1094150 1094455 -241569898 + AluSp SINE Alu 1 307 -6 1151 103 23 23 chr1 1094455 1094612 -241569741 + AluSg/x SINE Alu 135 294 -18 2193 85 0 3 chr1 1094612 1094907 -241569446 + AluY SINE Alu 1 294 -17 2247 103 0 0 chr1 1095127 1095429 -241568924 - AluSx SINE Alu -10 302 1 1254 149 0 0 chr1 1097730 1097925 -241566428 - AluJb SINE Alu 0 312 118 2069 121 6 6 chr1 1098401 1098714 -241565639 - AluSq SINE Alu 0 313 1 2327 79 0 3 chr1 1098714 1099017 -241565336 - AluY SINE Alu -9 302 1 2123 113 0 0 chr1 1099018 1099309 -241565044 - AluSg SINE Alu -19 291 1 868 157 0 7 chr1 1099462 1099609 -241564744 - AluJo SINE Alu -166 146 1 304 323 8 40 chr1 1099718 1099842 -241564511 + L1ME LINE L1 6 125 -5945 1324 136 5 0 chr1 1099890 1100088 -241564265 - AluSq SINE Alu -35 278 80 301 125 54 11 chr1 1100096 1100186 -241564167 - L1P5 LINE L1 -710 5441 5346 2129 125 3 0 chr1 1100718 1101029 -241563324 + AluSq SINE Alu 1 312 -1 494 312 24 0 chr1 1101165 1101335 -241563018 + MER3 DNA MER1_type 22 195 -14 2397 64 0 10 chr1 1101423 1101735 -241562618 - AluY SINE Alu -2 309 1 2143 101 0 3 chr1 1101741 1102037 -241562316 - AluSx SINE Alu -17 295 1 1613 147 8 4 chr1 1102077 1102342 -241562011 + AluSx SINE Alu 42 307 -5 1631 159 3 75 chr1 1102976 1103296 -241561057 - AluSx SINE Alu -15 297 1 2244 96 3 0 chr1 1103299 1103602 -241560751 - AluSx SINE Alu 0 312 9 2080 120 0 13 chr1 1103829 1104137 -241560216 - AluY SINE Alu -7 304 1 234 119 24 0 chr1 1104137 1104179 -241560174 - Alu SINE Alu -258 44 2 * 300 127 16 16 chr1 1104179 1104224 -241560129 - AluJ/FLAM SINE Alu -257 45 1 229 183 33 0 chr1 1104238 1104298 -241560055 - AluJ/FLAM SINE Alu -240 62 1 1483 170 50 14 chr1 1105129 1105411 -241558942 - AluJo SINE Alu -17 295 4 2072 125 0 0 chr1 1105554 1105843 -241558510 + AluSg SINE Alu 1 289 -21 311 284 50 14 chr1 1107953 1108094 -241556259 - MER65A LTR ERV1 -299 146 1 2007 132 10 0 chr1 1108119 1108414 -241555939 + AluSx SINE Alu 1 298 -14 1894 133 0 7 chr1 1108414 1108700 -241555653 + AluY SINE Alu 6 289 -22 1764 84 54 64 chr1 1108701 1108999 -241555354 + AluY SINE Alu 1 295 -16 2278 67 0 26 chr1 1109000 1109312 -241555041 + AluY SINE Alu 1 304 -7 2134 74 0 65 chr1 1109369 1109694 -241554659 + AluY SINE Alu 1 304 -7 2133 117 10 0 chr1 1110074 1110383 -241553970 + AluSx SINE Alu 1 312 0 357 332 109 10 chr1 1111357 1111559 -241552794 - MIR SINE MIR -21 241 20 658 164 94 0 chr1 1111562 1111690 -241552663 - FAM SINE Alu -45 140 1 1736 98 55 4 chr1 1111714 1111968 -241552385 - AluSg SINE Alu 0 310 44 1677 171 7 20 chr1 1111978 1112282 -241552071 - AluJb SINE Alu -11 301 2 519 147 198 0 chr1 1112991 1113107 -241551246 + Tigger1 DNA MER2_type 1 139 -2279 286 70 0 0 chr1 1113111 1113154 -241551199 - AluY SINE Alu -5 295 253 1516 110 0 5 chr1 1113155 1113364 -241550989 - AluY SINE Alu -103 208 1 213 309 12 48 chr1 1113518 1113602 -241550751 - L2 LINE L2 -2760 554 474 1218 131 159 36 chr1 1114022 1114274 -241550079 - AluY SINE Alu -17 294 12 1219 168 0 0 chr1 1114340 1114536 -241549817 + AluSg/x SINE Alu 98 293 -17 2141 102 0 17 chr1 1114538 1114832 -241549521 + AluSg SINE Alu 3 291 -19 2149 76 0 17 chr1 1114836 1115164 -241549189 + AluY SINE Alu 1 323 0 2287 80 3 3 chr1 1115318 1115619 -241548734 + AluY SINE Alu 1 301 -10 2396 60 0 7 chr1 1116297 1116597 -241547756 + AluY SINE Alu 1 298 -13 905 126 0 15 chr1 1118177 1118312 -241546041 + AluJo SINE Alu 1 133 -169 2459 70 0 3 chr1 1118388 1118701 -241545652 - AluSx SINE Alu 0 312 1 856 194 26 0 chr1 1119144 1119299 -241545054 + AluJo SINE Alu 137 295 -7 317 181 169 0 chr1 1119959 1120042 -241544311 + FLAM_A SINE Alu 33 129 -4 296 261 70 14 chr1 1120732 1120874 -241543479 + L1M4b LINE L1 779 928 -5356 * 1434 281 108 9 chr1 1120871 1121597 -241542756 + L1M4b LINE L1 1140 2035 -4347 302 286 181 4 chr1 1121677 1121936 -241542417 + L1M4b LINE L1 2173 2515 -3905 344 285 47 17 chr1 1122008 1122026 -241542327 + L1M4b LINE L1 2603 2619 -3763 1578 137 0 0 chr1 1122026 1122260 -241542093 + AluSg/x SINE Alu 76 309 -1 344 285 47 17 chr1 1122260 1122413 -241541940 + L1M4b LINE L1 2619 2779 -3603 2152 92 0 13 chr1 1122417 1122731 -241541622 + AluSg SINE Alu 1 310 0 2012 117 0 10 chr1 1123086 1123386 -241540967 - AluY SINE Alu -14 297 1 1065 189 4 25 chr1 1123386 1123630 -241540723 - L1M4c LINE L1 -4542 1842 1604 1409 152 28 24 chr1 1123631 1123881 -241540472 - AluJo SINE Alu -12 300 50 4167 199 130 29 chr1 1123882 1125330 -241539023 - L1M4c LINE L1 -4774 1610 17 448 141 10 10 chr1 1126300 1126399 -241537954 + GA-rich Low_complexity Low_complexity 2 100 0 2346 86 0 0 chr1 1126572 1126874 -241537479 - AluSx SINE Alu -10 302 1 1746 148 7 30 chr1 1128675 1128860 -241535493 - AluJo SINE Alu -21 291 114 2295 77 3 10 chr1 1128860 1129160 -241535193 + AluSg SINE Alu 1 298 -12 1746 148 7 30 chr1 1129160 1129272 -241535081 - AluJo SINE Alu -198 114 1 35 24 0 0 chr1 1134909 1134951 -241529402 + GC_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr1 1135113 1135147 -241529206 + GC_rich Low_complexity Low_complexity 1 34 0 376 224 24 8 chr1 1138185 1138310 -241526043 + (CA)n Simple_repeat Simple_repeat 2 128 0 236 127 18 0 chr1 1138350 1138405 -241525948 + (CA)n Simple_repeat Simple_repeat 1 56 0 346 325 101 34 chr1 1138782 1139068 -241525285 + L1ME LINE L1 757 5407 -648 357 146 0 0 chr1 1139072 1139144 -241525209 + AluJ/FLAM SINE Alu 5 59 -243 547 172 82 16 chr1 1139205 1139327 -241525026 + FLAM_A SINE Alu 1 130 -3 2229 84 0 7 chr1 1139375 1139671 -241524682 + AluY SINE Alu 1 294 -17 2145 99 0 10 chr1 1139671 1139964 -241524389 + AluSg SINE Alu 1 290 -20 2278 87 6 13 chr1 1140197 1140508 -241523845 - AluSc SINE Alu 0 309 1 1015 166 6 6 chr1 1140525 1140688 -241523665 - FRAM SINE Alu 0 166 4 1875 114 0 28 chr1 1140916 1141229 -241523124 - AluSx SINE Alu 0 305 1 2151 80 3 17 chr1 1141237 1141539 -241522814 - AluSg SINE Alu -12 298 1 26 0 0 0 chr1 1141774 1141800 -241522553 + GC_rich Low_complexity Low_complexity 1 26 0 200 136 0 68 chr1 1143063 1143122 -241521231 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 851 272 79 41 chr1 1143874 1144293 -241520060 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1144345 1144448 -241519905 + AluSp/q SINE Alu 193 295 -18 2239 95 13 0 chr1 1144470 1144776 -241519577 - AluSx SINE Alu -2 310 1 280 232 50 144 chr1 1144778 1144924 -241519429 - L1M4 LINE L1 -822 5324 5166 2131 108 7 0 chr1 1144924 1145221 -241519132 - AluSp SINE Alu -2 311 13 2251 107 0 0 chr1 1145230 1145528 -241518825 - AluSx SINE Alu -14 298 1 280 232 50 144 chr1 1145528 1145711 -241518642 - L1M4 LINE L1 -988 5158 5017 257 337 232 6 chr1 1145721 1145902 -241518451 + MIR SINE MIR 40 261 -1 2022 118 7 3 chr1 1146046 1146343 -241518010 - AluY SINE Alu -13 298 1 280 269 57 80 chr1 1146546 1146617 -241517736 - L1MC4a LINE L1 -571 7237 7166 1920 132 17 0 chr1 1146617 1146905 -241517448 - AluSg SINE Alu -17 293 1 280 269 57 80 chr1 1146905 1147008 -241517345 - L1MC4a LINE L1 -642 7166 7067 1946 146 10 0 chr1 1147117 1147238 -241517115 + AluSx SINE Alu 9 127 -185 2191 102 0 13 chr1 1147238 1147552 -241516801 + AluSx SINE Alu 1 310 -2 1946 146 10 0 chr1 1147552 1147731 -241516622 + AluSx SINE Alu 127 312 0 1135 143 6 6 chr1 1147768 1147943 -241516410 + AluSx SINE Alu 1 175 -137 315 0 0 0 chr1 1147943 1147978 -241516375 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 1088 141 5 40 chr1 1147978 1148177 -241516176 + AluSg/x SINE Alu 119 310 0 2077 230 56 112 chr1 1148197 1148493 -241515860 + L1M4 LINE L1 4068 4379 -1767 1708 84 0 0 chr1 1148493 1148732 -241515621 + AluY SINE Alu 70 308 0 1867 128 38 7 chr1 1148740 1149030 -241515323 + AluSq SINE Alu 1 299 -14 2077 230 56 112 chr1 1149030 1149776 -241514577 + L1M4 LINE L1 4386 5172 -974 1939 147 3 7 chr1 1149776 1150082 -241514271 - AluJb SINE Alu -7 305 1 2077 230 56 112 chr1 1150082 1150134 -241514219 + L1M4 LINE L1 5172 5107 -1039 1735 191 3 3 chr1 1150134 1150437 -241513916 - AluJb SINE Alu -9 303 1 2077 230 56 112 chr1 1150437 1150461 -241513892 + L1M4 LINE L1 5106 5130 -1016 666 102 0 0 chr1 1150464 1150552 -241513801 + AluJ/FLAM SINE Alu 1 88 -224 532 145 81 128 chr1 1150552 1150731 -241513622 + L1MD3 LINE L1 6069 6255 -1711 2356 76 0 3 chr1 1150731 1151034 -241513319 + AluSp SINE Alu 1 302 -11 532 145 81 128 chr1 1151034 1151114 -241513239 + L1MD3 LINE L1 6255 6337 -1629 2232 97 0 3 chr1 1151114 1151414 -241512939 - AluSq SINE Alu -14 299 1 532 145 81 128 chr1 1151414 1151450 -241512903 + L1MD3 LINE L1 6337 7959 -7 2089 121 0 7 chr1 1151476 1151782 -241512571 - AluSc SINE Alu -5 304 1 2491 50 0 10 chr1 1152723 1153025 -241511328 + AluSp SINE Alu 1 299 -14 2244 86 3 10 chr1 1154486 1154787 -241509566 - AluSp SINE Alu -14 299 1 2054 127 3 0 chr1 1156145 1156445 -241507908 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1158425 1158461 -241505892 + GA-rich Low_complexity Low_complexity 5 41 0 1100 105 12 6 chr1 1159458 1159620 -241504733 + AluY SINE Alu 122 284 -27 193 253 0 80 chr1 1361306 1361381 -241302972 + L2 LINE L2 525 593 -2721 817 248 8 29 chr1 1366040 1366278 -241298075 + AluSq SINE Alu 4 236 -77 231 302 113 0 chr1 1369702 1369808 -241294545 + MER58C DNA MER1_type 77 194 -21 216 268 61 12 chr1 1372903 1372985 -241291368 - L2 LINE L2 -50 3222 3137 1432 288 31 6 chr1 1375445 1375924 -241288429 + L1MB5 LINE L1 5684 6174 0 2168 115 0 6 chr1 1375957 1376270 -241288083 + AluSq SINE Alu 1 311 -2 180 125 0 0 chr1 1378262 1378294 -241286059 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 531 251 4 92 chr1 1381901 1382140 -241282213 - L1MA10 LINE L1 0 6334 6117 309 250 0 43 chr1 1385721 1385885 -241278468 + (GGGTG)n Simple_repeat Simple_repeat 3 159 0 211 274 32 0 chr1 1386404 1386466 -241277887 + MER5B DNA MER1_type 1 64 -114 392 331 162 0 chr1 1387464 1387618 -241276735 - MER5A DNA MER1_type -6 183 5 280 358 54 18 chr1 1394475 1394696 -241269657 + MIR SINE MIR 22 250 -12 1651 148 8 4 chr1 1395328 1395584 -241268769 + AluJo SINE Alu 3 259 -53 463 169 19 32 chr1 1395605 1395759 -241268594 + GA-rich Low_complexity Low_complexity 5 156 0 1589 144 95 3 chr1 1395768 1396053 -241268300 + AluJo SINE Alu 1 311 -1 231 88 0 0 chr1 1399785 1399819 -241264534 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 247 306 0 12 chr1 1402870 1402955 -241261398 + (CA)n Simple_repeat Simple_repeat 1 84 0 498 280 0 4 chr1 1405243 1405475 -241258878 + (TG)n Simple_repeat Simple_repeat 1 230 0 239 239 182 0 chr1 1407431 1407519 -241256834 - L2 LINE L2 -5 3267 3164 201 248 272 8 chr1 1408778 1408903 -241255450 - MER5A DNA MER1_type 0 189 32 255 289 100 0 chr1 1410181 1410271 -241254082 + MIR SINE MIR 94 192 -70 226 286 26 0 chr1 1410848 1410925 -241253428 + L2 LINE L2 2896 2974 -339 973 278 58 8 chr1 1414330 1414693 -241249660 + MLT1C LTR MaLR 11 391 -76 324 274 62 18 chr1 1415295 1415408 -241248945 - MIR3 SINE MIR -10 198 81 413 146 10 29 chr1 1417174 1417277 -241247076 + CT-rich Low_complexity Low_complexity 2 102 0 2502 56 0 0 chr1 1417545 1417850 -241246503 + AluY SINE Alu 1 305 -6 307 216 15 0 chr1 1420896 1420981 -241243372 + L1MB5 LINE L1 5688 5773 -393 433 283 114 4 chr1 1421164 1421401 -241242952 + L1MB5 LINE L1 5880 6142 -32 210 357 0 0 chr1 1425118 1425258 -241239095 + (TG)n Simple_repeat Simple_repeat 2 141 0 192 210 32 16 chr1 1425311 1425373 -241238980 + L2 LINE L2 2907 2969 -303 213 24 98 0 chr1 1425945 1425986 -241238367 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 257 309 79 8 chr1 1426717 1426843 -241237510 - MIR3 SINE MIR -63 145 11 270 357 7 7 chr1 1433272 1433412 -241230941 + (TG)n Simple_repeat Simple_repeat 1 140 0 195 276 0 0 chr1 1433441 1433517 -241230836 + (TG)n Simple_repeat Simple_repeat 1 76 0 279 325 16 8 chr1 1433542 1433665 -241230688 + (TG)n Simple_repeat Simple_repeat 1 124 0 276 30 0 0 chr1 1433686 1433719 -241230634 + (TG)n Simple_repeat Simple_repeat 1 33 0 216 0 0 0 chr1 1433841 1433865 -241230488 + (A)n Simple_repeat Simple_repeat 1 24 0 2426 247 61 7 chr1 1438381 1439089 -241225264 + L1MB7 LINE L1 5427 6172 -12 1421 285 42 0 chr1 1439170 1439577 -241224776 - MER82 DNA MER2_type 0 653 230 476 182 17 149 chr1 1439589 1439770 -241224583 + Tigger1 DNA MER2_type 1 157 -2261 * 647 207 173 0 chr1 1439768 1439947 -241224406 + Tigger1 DNA MER2_type 2209 2418 0 * 808 245 15 15 chr1 1439947 1440145 -241224208 - MER82 DNA MER2_type -455 198 1 1925 172 0 6 chr1 1440797 1441111 -241223242 - AluJo SINE Alu 0 312 1 2106 130 7 0 chr1 1443843 1444144 -241220209 + AluSx SINE Alu 1 303 -9 1541 189 7 0 chr1 1444337 1444633 -241219720 + MER47A DNA MER2_type 69 366 0 249 289 45 77 chr1 1449572 1449728 -241214625 - MIR3 SINE MIR -37 171 21 22 0 0 0 chr1 1450388 1450410 -241213943 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr1 1451481 1451525 -241212828 + (CA)n Simple_repeat Simple_repeat 1 44 0 251 243 0 58 chr1 1452513 1452616 -241211737 + GA-rich Low_complexity Low_complexity 2 98 0 760 41 0 0 chr1 1453856 1453953 -241210400 + AluSc SINE Alu 212 308 -1 298 374 6 18 chr1 1455204 1455367 -241208986 + (TG)n Simple_repeat Simple_repeat 2 162 0 244 259 84 69 chr1 1455680 1455811 -241208542 - MIR3 SINE MIR -45 163 31 186 43 0 0 chr1 1461349 1461372 -241202981 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 1675 140 0 0 chr1 1462801 1463037 -241201316 - AluSx SINE Alu -76 236 1 227 345 18 0 chr1 1465507 1465617 -241198736 + (CACG)n Simple_repeat Simple_repeat 1 112 0 381 228 0 102 chr1 1466344 1466541 -241197812 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 243 262 19 56 chr1 1466554 1466711 -241197642 + (TGAA)n Simple_repeat Simple_repeat 1 151 0 2184 117 3 0 chr1 1468713 1469021 -241195332 - AluSg SINE Alu -1 309 1 253 411 47 0 chr1 1469299 1469466 -241194887 - MIR SINE MIR -37 225 44 474 165 124 0 chr1 1472195 1472292 -241192061 + MIR SINE MIR 36 144 -118 348 337 29 38 chr1 1473261 1473499 -241190854 - MIR SINE MIR -14 248 20 338 177 0 31 chr1 1473553 1473649 -241190704 + (CAT)n Simple_repeat Simple_repeat 3 95 0 1080 130 11 6 chr1 1473670 1474023 -241190330 + (CACCAT)n Simple_repeat Simple_repeat 1 356 0 258 231 0 0 chr1 1474051 1474142 -241190211 + (CAT)n Simple_repeat Simple_repeat 2 92 0 385 319 36 22 chr1 1474174 1474312 -241190041 - MIR SINE MIR -31 231 92 286 339 17 0 chr1 1475140 1475255 -241189098 + MIR SINE MIR 66 182 -80 293 200 0 0 chr1 1476837 1476892 -241187461 + MER2 DNA MER2_type 40 94 -251 216 97 0 0 chr1 1477017 1477048 -241187305 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 490 315 98 49 chr1 1477100 1477487 -241186866 - MLT1I LTR MaLR -3 406 1 196 279 16 49 chr1 1477599 1477660 -241186693 - MIR SINE MIR -12 250 192 2300 57 4 0 chr1 1477836 1478140 -241186213 - AluY SINE Alu 0 305 1 582 280 30 10 chr1 1478142 1478342 -241186011 - L1MC2 LINE L1 -16 6328 6125 420 326 71 10 chr1 1478354 1478550 -241185803 - L1MC2 LINE L1 -253 6091 5884 7950 28 5 3 chr1 1479422 1480471 -241183882 - L1PA3 LINE L1 -1018 5128 4078 7676 27 3 3 chr1 1480471 1481505 -241182848 + L1PA3 LINE L1 5116 6150 0 198 0 0 0 chr1 1481505 1481527 -241182826 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 201 74 0 0 chr1 1483391 1483418 -241180935 + (CACCT)n Simple_repeat Simple_repeat 3 29 0 231 176 39 0 chr1 1485471 1485522 -241178831 + C-rich Low_complexity Low_complexity 3 55 0 184 300 67 22 chr1 1488986 1489076 -241175277 + MER5A DNA MER1_type 61 154 -35 428 337 56 22 chr1 1490261 1490439 -241173914 - MIR SINE MIR -72 190 7 565 230 11 0 chr1 1490561 1490739 -241173614 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 273 228 0 0 chr1 1490754 1490833 -241173520 + (TGGA)n Simple_repeat Simple_repeat 4 82 0 674 201 0 22 chr1 1490850 1491034 -241173319 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 925 174 7 0 chr1 1491046 1491338 -241173015 + (TGGA)n Simple_repeat Simple_repeat 1 294 0 930 159 3 0 chr1 1491473 1491791 -241172562 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 270 0 0 0 chr1 1491807 1491837 -241172516 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 219 139 0 0 chr1 1491838 1491874 -241172479 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 203 275 73 55 chr1 1493253 1493362 -241170991 - MIR SINE MIR -111 151 41 1108 242 109 19 chr1 1493416 1493837 -241170516 + MLT1C LTR MaLR 9 467 0 1657 225 42 9 chr1 1494849 1495297 -241169056 - L1MB3 LINE L1 -8 6175 5713 214 204 0 0 chr1 1495548 1495592 -241168761 + MIR SINE MIR 98 141 -67 21 36 0 0 chr1 1497747 1497775 -241166578 + AT_rich Low_complexity Low_complexity 1 28 0 400 321 71 12 chr1 1498228 1498396 -241165957 - MIR SINE MIR -80 182 5 205 392 39 0 chr1 1498925 1499055 -241165298 + MIR SINE MIR 105 239 -23 326 232 32 95 chr1 1499505 1499695 -241164658 + G-rich Low_complexity Low_complexity 2 179 0 220 258 62 21 chr1 1499739 1499836 -241164517 + G-rich Low_complexity Low_complexity 2 102 0 324 252 65 26 chr1 1499857 1500012 -241164341 + G-rich Low_complexity Low_complexity 2 162 0 253 340 30 0 chr1 1500837 1500937 -241163416 + MIR SINE MIR 81 183 -79 936 275 57 8 chr1 1503921 1504292 -241160061 + MLT1C LTR MaLR 75 463 -4 312 292 35 0 chr1 1505423 1505536 -241158817 + L1MB4 LINE L1 5946 6062 -118 * 518 326 26 5 chr1 1505529 1505722 -241158631 + L1MB4 LINE L1 5978 6174 -6 477 352 28 0 chr1 1506912 1507091 -241157262 + MIR SINE MIR 50 233 -29 734 178 17 23 chr1 1507779 1507953 -241156400 + MER53 DNA DNA 13 185 -4 1864 214 26 5 chr1 1508160 1508539 -241155814 + MLT1B LTR MaLR 4 390 0 333 256 53 53 chr1 1508729 1508745 -241155608 + L1M4 LINE L1 3069 3200 -2945 2003 110 23 10 chr1 1508745 1509168 -241155185 + AluSx SINE Alu 1 427 0 53 57 0 0 chr1 1509352 1509440 -241154913 + AT_rich Low_complexity Low_complexity 1 88 0 180 0 0 0 chr1 1510372 1510392 -241153961 + (T)n Simple_repeat Simple_repeat 1 20 0 319 203 14 0 chr1 1510515 1510584 -241153769 - MER53 DNA DNA -117 72 3 999 100 0 0 chr1 1515387 1515537 -241148816 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 1878 151 3 10 chr1 1517229 1517541 -241146812 - AluSx SINE Alu -2 310 1 205 325 33 0 chr1 1517589 1517663 -241146690 - MIR SINE MIR -61 147 71 183 328 76 23 chr1 1520012 1520143 -241144210 - MIR3 SINE MIR -46 162 25 462 190 27 54 chr1 1520591 1520775 -241143578 + (CA)n Simple_repeat Simple_repeat 1 179 0 210 207 29 23 chr1 1520816 1520990 -241143363 + (CA)n Simple_repeat Simple_repeat 1 175 0 437 228 47 12 chr1 1521001 1521172 -241143181 + (CA)n Simple_repeat Simple_repeat 1 177 0 350 268 48 18 chr1 1521211 1521379 -241142974 + (CA)n Simple_repeat Simple_repeat 1 173 0 2148 91 3 0 chr1 1524038 1524350 -241140003 + AluSx SINE Alu 1 313 0 319 229 135 0 chr1 1531366 1531462 -241132891 + MIR SINE MIR 35 143 -65 22 0 0 0 chr1 1536209 1536231 -241128122 + AT_rich Low_complexity Low_complexity 1 22 0 390 362 54 25 chr1 1536303 1536586 -241127767 + L1 LINE L1 4407 4697 -1449 22 0 0 0 chr1 1536995 1537017 -241127336 + AT_rich Low_complexity Low_complexity 1 22 0 224 175 16 0 chr1 1537927 1537990 -241126363 + GA-rich Low_complexity Low_complexity 1 64 0 234 128 0 0 chr1 1538335 1538374 -241125979 + (CA)n Simple_repeat Simple_repeat 1 39 0 474 228 12 20 chr1 1538414 1538769 -241125584 + (CA)n Simple_repeat Simple_repeat 1 351 0 245 105 0 0 chr1 1543273 1543311 -241121042 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 180 0 0 0 chr1 1545009 1545029 -241119324 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 205 304 0 38 chr1 1548969 1549048 -241115305 + (CACG)n Simple_repeat Simple_repeat 2 77 0 267 189 0 0 chr1 1549565 1549618 -241114735 + (TG)n Simple_repeat Simple_repeat 2 54 0 590 251 0 6 chr1 1549665 1549840 -241114513 + (CA)n Simple_repeat Simple_repeat 1 174 0 511 252 3 10 chr1 1553110 1553424 -241110929 + (TG)n Simple_repeat Simple_repeat 1 311 0 219 139 0 0 chr1 1553440 1553476 -241110877 + (CGTG)n Simple_repeat Simple_repeat 3 38 0 760 189 0 11 chr1 1553489 1553669 -241110684 + (TG)n Simple_repeat Simple_repeat 1 178 0 441 270 79 11 chr1 1554049 1554238 -241110115 + MER20 DNA MER1_type 5 206 -13 207 200 22 0 chr1 1554306 1554351 -241110002 + CT-rich Low_complexity Low_complexity 4 49 0 180 225 12 25 chr1 1556226 1556306 -241108047 + CT-rich Low_complexity Low_complexity 2 80 0 1345 110 0 88 chr1 1558687 1558698 -241105655 - AluSg/x SINE Alu 0 312 302 298 0 0 0 chr1 1558698 1558731 -241105622 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1345 110 0 88 chr1 1558731 1558946 -241105407 - AluSg/x SINE Alu -10 302 86 249 314 0 10 chr1 1559451 1559553 -241104800 + L1M4 LINE L1 4934 5034 -1112 217 296 10 61 chr1 1559682 1559780 -241104573 + MIR SINE MIR 102 194 -68 239 313 115 0 chr1 1561113 1561209 -241103144 + L2 LINE L2 2420 2526 -788 979 209 164 21 chr1 1564337 1564667 -241099686 + MLT1B LTR MaLR 14 390 0 213 273 81 30 chr1 1565578 1565677 -241098676 + MIR SINE MIR 43 146 -62 225 94 0 0 chr1 1577873 1577905 -241086448 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 2236 84 17 0 chr1 1578737 1579064 -241085289 + AluSx SINE Alu 6 337 0 1987 80 58 11 chr1 1579065 1579374 -241084979 + AluY SINE Alu 1 311 0 27 0 0 0 chr1 1579504 1579531 -241084822 + AT_rich Low_complexity Low_complexity 1 27 0 266 211 0 60 chr1 1580513 1580646 -241083707 + (GGCTG)n Simple_repeat Simple_repeat 1 125 0 291 329 90 7 chr1 1582178 1582333 -241082020 - MIR SINE MIR -83 179 12 24 0 0 0 chr1 1592435 1592459 -241071894 + AT_rich Low_complexity Low_complexity 1 24 0 270 81 0 0 chr1 1593366 1593403 -241070950 + (CA)n Simple_repeat Simple_repeat 2 38 0 195 292 0 15 chr1 1593516 1593581 -241070772 + MIR SINE MIR 80 143 -119 24 53 0 0 chr1 1597924 1597962 -241066391 + GC_rich Low_complexity Low_complexity 1 38 0 214 235 0 0 chr1 1598171 1598222 -241066131 + C-rich Low_complexity Low_complexity 1 51 0 99 82 0 0 chr1 1598278 1598510 -241065843 + GC_rich Low_complexity Low_complexity 1 232 0 225 0 0 0 chr1 1598733 1598758 -241065595 + (CCG)n Simple_repeat Simple_repeat 2 26 0 211 209 30 30 chr1 1599270 1599337 -241065016 + C-rich Low_complexity Low_complexity 4 70 0 203 250 19 0 chr1 1602380 1602432 -241061921 + CT-rich Low_complexity Low_complexity 2 54 0 22 0 0 0 chr1 1604030 1604052 -241060301 + GC_rich Low_complexity Low_complexity 1 22 0 216 189 0 0 chr1 1604377 1604414 -241059939 + MIR SINE MIR 108 144 -118 314 328 38 8 chr1 1607180 1607311 -241057042 - MIR SINE MIR -100 162 28 1198 177 0 0 chr1 1608625 1608845 -241055508 + L1MB8 LINE L1 5764 5983 -195 966 284 156 16 chr1 1609023 1609466 -241054887 - L2 LINE L2 0 3313 2809 1450 213 25 50 chr1 1609470 1609902 -241054451 + MLT1D LTR MaLR 89 503 -2 1003 265 58 11 chr1 1610246 1610605 -241053748 - HAL1 LINE L1 -895 1612 1237 293 282 261 31 chr1 1610610 1610936 -241053417 - HAL1 LINE L1 -1544 963 563 416 315 164 42 chr1 1610946 1611086 -241053267 - HAL1 LINE L1 -2046 461 339 2089 103 10 10 chr1 1611086 1611378 -241052975 - AluSq SINE Alu -21 292 1 416 315 164 42 chr1 1611378 1611646 -241052707 - HAL1 LINE L1 -2168 339 3 377 300 42 17 chr1 1611928 1612048 -241052305 + L1ME4a LINE L1 5978 6100 -21 1102 145 0 16 chr1 1612087 1612273 -241052080 + AluJb SINE Alu 129 311 -1 1079 263 138 5 chr1 1612723 1613107 -241051246 - L1MB4 LINE L1 0 6180 5746 2544 113 17 87 chr1 1614183 1614643 -241049710 + MSTA LTR MaLR 1 428 0 335 306 9 9 chr1 1615422 1615530 -241048823 + L2 LINE L2 3206 3313 0 628 172 22 21 chr1 1615546 1615827 -241048526 + (TGGA)n Simple_repeat Simple_repeat 1 281 0 919 160 7 19 chr1 1615869 1616138 -241048215 + (TGGA)n Simple_repeat Simple_repeat 1 265 0 755 189 15 15 chr1 1616152 1616685 -241047668 + (TGGG)n Simple_repeat Simple_repeat 1 533 0 261 243 0 0 chr1 1616701 1616771 -241047582 + (TGGG)n Simple_repeat Simple_repeat 3 72 0 3202 217 29 41 chr1 1618742 1619798 -241044555 - L1MB4 LINE L1 -893 5253 4210 2198 253 44 6 chr1 1619800 1620877 -241043476 - L1MB4 LINE L1 -2698 3448 2128 1577 264 67 32 chr1 1620884 1621828 -241042525 - L1MEc LINE L1 -4287 2109 1133 712 174 0 43 chr1 1621872 1622010 -241042343 - FLAM_C SINE Alu -1 132 1 6599 156 56 48 chr1 1622160 1622690 -241041663 + Tigger1 DNA MER2_type 936 1460 -958 2441 138 40 0 chr1 1622690 1623061 -241041292 + L1PA15 LINE L1 5777 6162 -3 6599 156 56 48 chr1 1623061 1623534 -241040819 + Tigger1 DNA MER2_type 1460 1928 -490 1753 179 3 0 chr1 1623534 1623830 -241040523 - AluJo SINE Alu -15 297 1 6599 156 56 48 chr1 1623830 1624151 -241040202 + Tigger1 DNA MER2_type 1928 2277 -141 2064 129 10 0 chr1 1624151 1624461 -241039892 - AluSq SINE Alu 0 313 1 6599 156 56 48 chr1 1624461 1624605 -241039748 + Tigger1 DNA MER2_type 2277 2418 0 338 323 76 66 chr1 1624751 1624949 -241039404 + L1ME LINE L1 3595 3794 -2352 1028 154 0 0 chr1 1624969 1625125 -241039228 + AluJo SINE Alu 3 158 -154 186 209 0 0 chr1 1625257 1625300 -241039053 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 268 344 62 43 chr1 1625453 1625518 -241038835 + L1ME LINE L1 3784 3846 -2300 2064 128 6 6 chr1 1625518 1625830 -241038523 + AluSx SINE Alu 1 312 0 268 344 62 43 chr1 1625830 1626518 -241037835 + L1ME LINE L1 3846 4559 -1587 1010 215 10 0 chr1 1626518 1626723 -241037630 - L1MA4 LINE L1 -7 6293 6087 268 344 62 43 chr1 1626723 1626879 -241037474 + L1ME LINE L1 4559 4711 -1435 343 299 49 14 chr1 1627311 1627455 -241036898 + L1ME LINE L1 5364 5512 -654 226 285 58 7 chr1 1627739 1627876 -241036477 + (CA)n Simple_repeat Simple_repeat 1 144 0 * 251 248 57 25 chr1 1627805 1627962 -241036391 + (CATA)n Simple_repeat Simple_repeat 1 162 0 * 400 217 59 19 chr1 1627893 1628208 -241036145 + (CA)n Simple_repeat Simple_repeat 1 327 0 212 146 0 42 chr1 1628365 1628413 -241035940 + (GGGGA)n Simple_repeat Simple_repeat 1 46 0 306 331 64 25 chr1 1629294 1629451 -241034902 - MIR SINE MIR -92 170 8 308 248 51 15 chr1 1629758 1629895 -241034458 - LTR37A LTR ERV1 -1 425 284 197 343 97 22 chr1 1630343 1630477 -241033876 + L2 LINE L2 3103 3246 -26 544 158 20 82 chr1 1631025 1631171 -241033182 - MER31B LTR ERV1 -295 171 35 296 235 15 0 chr1 1633712 1633780 -241030573 - L1MC5 LINE L1 -918 7043 6975 653 220 147 81 chr1 1634304 1634686 -241029667 - MLT2D LTR ERVL -2 412 6 2410 59 0 0 chr1 1640921 1641210 -241023143 - AluY SINE Alu -22 289 1 1103 66 0 0 chr1 1641212 1641348 -241023005 - AluSq/x SINE Alu -177 136 1 414 121 0 0 chr1 1641349 1641415 -241022938 + THE1B LTR MaLR 299 364 0 368 242 66 0 chr1 1642444 1642552 -241021801 - MLT1I LTR MaLR -243 166 53 273 200 15 0 chr1 1642596 1642661 -241021692 + MER53 DNA DNA 99 164 -25 2655 168 7 2 chr1 1642661 1643083 -241021270 - MSTB LTR MaLR 0 426 3 9352 165 21 24 chr1 1643086 1644741 -241019612 - MSTB-int LTR MaLR -1 1650 1 2686 158 7 19 chr1 1644741 1645172 -241019181 - MSTB LTR MaLR 0 426 1 531 332 23 9 chr1 1647593 1647807 -241016546 - HERV16 LTR ERVL -2657 2339 2123 362 275 165 16 chr1 1648646 1648828 -241015525 + MIR SINE MIR 30 238 -24 1735 157 59 0 chr1 1649647 1649934 -241014419 - AluJo SINE Alu -8 304 1 192 409 0 0 chr1 1650379 1650472 -241013881 + L2 LINE L2 3146 3238 -75 864 219 0 13 chr1 1650654 1650975 -241013378 - MLT1B LTR MaLR -28 362 5 253 326 131 20 chr1 1651934 1652179 -241012174 + LTR16A1 LTR ERVL 1 272 -185 306 355 23 61 chr1 1652398 1652612 -241011741 + MIR SINE MIR 12 217 -45 620 295 52 44 chr1 1653629 1654015 -241010338 + L1MEd LINE L1 32 420 -5699 344 220 18 37 chr1 1654074 1654183 -241010170 + L1M4 LINE L1 14 120 -6422 266 264 28 0 chr1 1654190 1654262 -241010091 + ERVL LTR ERVL 3784 3857 -1907 1547 176 105 14 chr1 1654294 1654657 -241009696 + MSTA LTR MaLR 6 401 -27 435 291 34 22 chr1 1654794 1654973 -241009380 + L1M4 LINE L1 2630 2810 -3834 837 167 0 7 chr1 1657636 1657774 -241006579 + AluJb SINE Alu 160 296 -16 23 33 0 0 chr1 1661454 1661484 -241002869 + GC_rich Low_complexity Low_complexity 1 30 0 206 191 26 70 chr1 1662876 1662991 -241001362 + (CACAC)n Simple_repeat Simple_repeat 1 110 0 388 111 25 0 chr1 1663895 1663976 -241000377 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 526 263 186 43 chr1 1663998 1664321 -241000032 + MLT1F1 LTR MaLR 171 539 -28 814 271 31 68 chr1 1664540 1664924 -240999429 + MLT1B LTR MaLR 9 378 -12 509 278 17 52 chr1 1669459 1669632 -240994721 - MIR SINE MIR -76 186 20 209 333 48 48 chr1 1673496 1673622 -240990731 + MER91B DNA MER1_type 30 155 -35 1479 284 103 8 chr1 1673852 1674318 -240990035 - L1M4 LINE L1 -1326 4803 4383 1985 142 3 0 chr1 1674318 1674606 -240989747 + AluSx SINE Alu 1 289 -23 1479 284 103 8 chr1 1674606 1675052 -240989301 - L1M4 LINE L1 -1746 4383 3804 318 283 51 74 chr1 1675056 1675659 -240988694 - L1MEd LINE L1 -3756 2373 1819 413 278 56 48 chr1 1675700 1675917 -240988436 - L1MEd LINE L1 -4590 1720 1506 2526 101 27 27 chr1 1675917 1676292 -240988061 + THE1C LTR MaLR 1 375 0 10403 103 45 39 chr1 1676292 1677863 -240986490 + THE1C-int LTR MaLR 1 1580 0 2356 118 21 24 chr1 1677865 1678239 -240986114 + THE1C LTR MaLR 3 375 0 413 278 56 48 chr1 1678239 1678409 -240985944 - L1MEd LINE L1 -4804 1506 1326 795 292 42 132 chr1 1678571 1679125 -240985228 - L1MEd LINE L1 -5036 1093 601 323 127 16 0 chr1 1679862 1679925 -240984428 + GA-rich Low_complexity Low_complexity 2 65 0 895 207 93 21 chr1 1682059 1682339 -240982014 - MLT1C LTR MaLR -162 305 6 249 168 84 28 chr1 1682744 1682887 -240981466 + (CAGCC)n Simple_repeat Simple_repeat 5 155 0 448 258 110 12 chr1 1684274 1684437 -240979916 + MER45C DNA AcHobo 42 220 -733 22 35 0 0 chr1 1684996 1685025 -240979328 + AT_rich Low_complexity Low_complexity 1 29 0 317 208 28 0 chr1 1685885 1685957 -240978396 - MER69 DNA AcHobo -3 2523 2450 411 308 18 0 chr1 1687311 1687480 -240976873 + (CA)n Simple_repeat Simple_repeat 1 172 0 276 328 5 43 chr1 1687416 1687602 -240976751 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 378 242 4 0 chr1 1687658 1687937 -240976416 + (CA)n Simple_repeat Simple_repeat 1 280 0 468 239 6 10 chr1 1687974 1688284 -240976069 + (CA)n Simple_repeat Simple_repeat 1 308 0 290 227 127 9 chr1 1688331 1688441 -240975912 + MLT1A2 LTR MaLR 181 303 -71 281 240 13 0 chr1 1688453 1688528 -240975825 + (CA)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr1 1689249 1689271 -240975082 + AT_rich Low_complexity Low_complexity 1 22 0 1532 155 85 7 chr1 1689278 1689549 -240974804 + AluJo SINE Alu 3 294 -18 280 281 21 42 chr1 1690504 1690600 -240973753 - MIR3 SINE MIR -20 188 95 454 299 24 6 chr1 1690968 1691143 -240973210 - MIR SINE MIR -63 145 11 1113 276 97 11 chr1 1691231 1691694 -240972659 + HAL1 LINE L1 1337 1839 -668 540 283 251 35 chr1 1691852 1692240 -240972113 + L1M2 LINE L1 1666 3127 -82 394 282 0 15 chr1 1692400 1692531 -240971822 - HAL1 LINE L1 -753 1754 1626 330 294 5 0 chr1 1694300 1694514 -240969839 + (TG)n Simple_repeat Simple_repeat 1 215 0 234 322 0 0 chr1 1694550 1694730 -240969623 + (TG)n Simple_repeat Simple_repeat 1 180 0 274 314 0 4 chr1 1694744 1694974 -240969379 + (TG)n Simple_repeat Simple_repeat 1 228 0 837 236 47 79 chr1 1697955 1698336 -240966017 - MLT1B LTR MaLR -21 369 1 245 326 139 0 chr1 1699910 1700039 -240964314 + MIR SINE MIR 46 192 -70 258 314 68 8 chr1 1701240 1701358 -240962995 + L2 LINE L2 3143 3267 -5 306 255 0 0 chr1 1702592 1702686 -240961667 + (TG)n Simple_repeat Simple_repeat 1 94 0 439 227 37 37 chr1 1702905 1703016 -240961337 + MER53 DNA DNA 1 114 -75 2259 160 24 3 chr1 1703016 1703398 -240960955 + MLT1B LTR MaLR 1 390 0 439 227 37 37 chr1 1703398 1703449 -240960904 + MER53 DNA DNA 113 163 -26 1080 147 0 0 chr1 1705569 1706313 -240958040 + (CAGCC)n Simple_repeat Simple_repeat 1 744 0 942 156 23 61 chr1 1707678 1707941 -240956412 - MLT1D LTR MaLR -206 299 47 532 381 34 19 chr1 1709349 1709669 -240954684 + L1MB5 LINE L1 5677 6001 -173 728 242 4 30 chr1 1709813 1710044 -240954309 + L1MB8 LINE L1 5948 6172 -6 246 333 28 0 chr1 1710224 1710332 -240954021 + MER53 DNA DNA 22 132 -57 289 172 16 0 chr1 1710385 1710449 -240953904 - MER53 DNA DNA -124 65 1 404 220 22 0 chr1 1711938 1712029 -240952324 + MIR SINE MIR 28 120 -142 1228 143 5 35 chr1 1713769 1713972 -240950381 + MER107 DNA MER1_type 1 197 0 448 259 125 14 chr1 1714760 1715101 -240949252 + MLT1C LTR MaLR 1 451 -16 268 400 0 7 chr1 1716323 1716463 -240947890 + (TG)n Simple_repeat Simple_repeat 1 139 0 227 250 0 30 chr1 1716532 1716664 -240947689 + (TG)n Simple_repeat Simple_repeat 1 128 0 248 239 32 13 chr1 1716716 1716871 -240947482 + (TG)n Simple_repeat Simple_repeat 1 158 0 386 250 0 22 chr1 1716904 1717088 -240947265 + (TG)n Simple_repeat Simple_repeat 1 180 0 373 240 11 17 chr1 1717105 1717284 -240947069 + (TG)n Simple_repeat Simple_repeat 1 178 0 785 243 0 0 chr1 1720278 1720426 -240943927 + FRAM SINE Alu 4 151 -15 196 248 0 16 chr1 1720811 1720936 -240943417 + (CA)n Simple_repeat Simple_repeat 1 123 0 233 320 96 6 chr1 1723327 1723483 -240940870 - MLT1K LTR MaLR -330 258 89 757 211 42 0 chr1 1724698 1724888 -240939465 - MLT1B LTR MaLR -78 312 115 428 190 117 15 chr1 1724976 1725099 -240939254 - MLT1B LTR MaLR -252 138 28 1347 266 59 11 chr1 1725818 1726291 -240938062 - L1MC1 LINE L1 0 6333 5838 262 250 0 0 chr1 1728035 1728095 -240936258 + GA-rich Low_complexity Low_complexity 3 62 0 209 269 29 0 chr1 1730156 1730260 -240934093 + (CACAC)n Simple_repeat Simple_repeat 5 111 0 850 285 79 25 chr1 1730619 1731061 -240933292 - MLT1D LTR MaLR 0 505 40 424 319 30 0 chr1 1731691 1731857 -240932496 + ERVL LTR ERVL 2145 2315 -3449 600 271 79 5 chr1 1731964 1732167 -240932186 - MER20 DNA MER1_type -1 218 1 576 225 60 161 chr1 1733651 1733742 -240930611 + MLT1B LTR MaLR 1 100 -290 294 29 0 0 chr1 1733742 1733777 -240930576 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 576 225 60 161 chr1 1733777 1733788 -240930565 + MLT1B LTR MaLR 100 111 -279 1981 136 0 0 chr1 1733788 1734067 -240930286 - AluSx SINE Alu -33 279 1 576 225 60 161 chr1 1734067 1734380 -240929973 + MLT1B LTR MaLR 111 375 -15 756 339 61 24 chr1 1734949 1735536 -240928817 + ERVL LTR ERVL 4768 5376 -388 202 290 0 19 chr1 1735569 1735676 -240928677 + (TG)n Simple_repeat Simple_repeat 1 105 0 518 239 6 17 chr1 1735689 1735869 -240928484 + (TG)n Simple_repeat Simple_repeat 1 178 0 489 249 0 17 chr1 1735926 1736107 -240928246 + (TG)n Simple_repeat Simple_repeat 1 178 0 517 216 0 28 chr1 1736168 1736349 -240928004 + (TG)n Simple_repeat Simple_repeat 1 176 0 1286 278 34 9 chr1 1737474 1737917 -240926436 + MLT1C LTR MaLR 4 457 -10 417 317 11 11 chr1 1739158 1739338 -240925015 + (TG)n Simple_repeat Simple_repeat 1 180 0 250 132 38 0 chr1 1739602 1739655 -240924698 + (GGGTG)n Simple_repeat Simple_repeat 4 58 0 219 294 95 8 chr1 1739800 1739926 -240924427 + MIR3 SINE MIR 65 201 -7 348 257 73 0 chr1 1741288 1741397 -240922956 - MER53 DNA DNA -72 117 1 1165 254 69 8 chr1 1741652 1742042 -240922311 + MLT1C LTR MaLR 9 422 -45 248 209 60 0 chr1 1742079 1742146 -240922207 + MLT1C LTR MaLR 435 505 0 263 336 9 9 chr1 1742714 1742830 -240921523 + (CACCC)n Simple_repeat Simple_repeat 3 118 0 428 134 52 22 chr1 1743424 1743558 -240920795 + GA-rich Low_complexity Low_complexity 4 141 0 370 302 81 75 chr1 1751146 1751504 -240912849 - L2 LINE L2 -7 3265 2906 240 341 28 50 chr1 1754272 1754451 -240909902 + L2 LINE L2 2996 3170 -102 239 330 19 29 chr1 1755056 1755159 -240909194 - MIR SINE MIR -128 134 33 2046 119 7 3 chr1 1756525 1756819 -240907534 - AluSx SINE Alu -17 295 1 1180 44 11 33 chr1 1756835 1757018 -240907335 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 273 283 0 53 chr1 1762480 1762575 -240901778 - MIR SINE MIR -62 146 60 197 340 0 0 chr1 1764715 1764765 -240899588 + L2 LINE L2 3223 3272 0 295 356 8 8 chr1 1764867 1764985 -240899368 + (CACG)n Simple_repeat Simple_repeat 4 121 0 334 279 6 57 chr1 1767986 1768144 -240896209 + (CGTG)n Simple_repeat Simple_repeat 2 151 0 668 257 125 64 chr1 1769487 1769895 -240894458 - MLT1C LTR MaLR -26 441 9 227 306 7 0 chr1 1770752 1770899 -240893454 + (CAGC)n Simple_repeat Simple_repeat 4 151 0 236 242 16 0 chr1 1771320 1771382 -240892971 + G-rich Low_complexity Low_complexity 3 65 0 630 325 59 6 chr1 1772716 1773036 -240891317 - MLT1E LTR MaLR -164 429 93 690 106 35 7 chr1 1774272 1774414 -240889939 + CT-rich Low_complexity Low_complexity 1 146 0 1070 296 41 11 chr1 1774414 1774856 -240889497 - L1MC3 LINE L1 -727 7058 6604 282 203 0 14 chr1 1775550 1775619 -240888734 - L1MD3 LINE L1 -385 7610 7543 * 287 207 11 35 chr1 1775616 1775703 -240888650 + L1MD3 LINE L1 7911 7995 0 231 261 0 0 chr1 1776921 1776967 -240887386 + polypurine Low_complexity Low_complexity 3 48 0 1541 165 83 0 chr1 1780011 1780277 -240884076 - AluJo SINE Alu -21 291 4 1149 235 74 6 chr1 1780324 1780647 -240883706 + L1ME2 LINE L1 5451 5795 -371 940 255 18 24 chr1 1781811 1782140 -240882213 + L1ME2 LINE L1 5785 6111 -53 1909 206 18 8 chr1 1782149 1782547 -240881806 - L1MB3 LINE L1 -1 6182 5781 888 189 65 9 chr1 1782552 1782769 -240881584 - Tigger7 DNA MER2_type -9 2482 2254 243 247 27 0 chr1 1782839 1782912 -240881441 - Tigger7 DNA MER2_type -295 2292 2218 3142 210 54 1 chr1 1782919 1783642 -240880711 - Tigger7 DNA MER2_type -1724 763 3 735 247 68 11 chr1 1783676 1783939 -240880414 - L1MB3 LINE L1 -402 5778 5501 320 149 32 75 chr1 1784818 1784912 -240879441 - L1M3 LINE L1 -619 5549 5460 308 333 0 18 chr1 1785335 1785506 -240878847 + G-rich Low_complexity Low_complexity 2 169 0 490 286 0 0 chr1 1786103 1786215 -240878138 + MER81 DNA DNA 3 114 0 413 307 132 21 chr1 1786569 1786758 -240877595 - MIR SINE MIR -7 255 46 2301 109 0 0 chr1 1786927 1787238 -240877115 - AluSx SINE Alu -1 311 1 1122 223 106 64 chr1 1787949 1788364 -240875989 + MLT1D LTR MaLR 5 445 -60 1997 92 44 4 chr1 1788364 1788673 -240875680 - AluY SINE Alu 0 320 1 1122 223 106 64 chr1 1788673 1788737 -240875616 + MLT1D LTR MaLR 445 505 0 307 303 0 13 chr1 1788838 1788914 -240875439 + L1ME LINE L1 1261 1335 -5195 232 252 69 88 chr1 1788915 1789074 -240875279 + L1ME LINE L1 1766 1921 -4619 * 1522 231 42 5 chr1 1789058 1789490 -240874863 + L1MB7 LINE L1 5565 6012 -172 1044 79 14 0 chr1 1789490 1789629 -240874724 - AluSp/q SINE Alu -17 296 156 567 179 62 0 chr1 1789636 1789781 -240874572 + L1MB7 LINE L1 6031 6184 0 441 251 44 98 chr1 1789781 1789984 -240874369 + L1ME LINE L1 1954 2145 -4576 2298 66 0 3 chr1 1790102 1790389 -240873964 + AluY SINE Alu 1 286 -25 574 275 39 14 chr1 1790405 1790612 -240873741 + LTR40b LTR ERVL 154 365 -97 592 246 94 70 chr1 1790628 1791274 -240873079 + L1ME LINE L1 2284 2910 -3630 524 279 56 45 chr1 1791297 1791530 -240872823 + L1ME LINE L1 2802 3042 -3498 1380 269 22 11 chr1 1791530 1791891 -240872462 - MLT1A1 LTR MaLR 0 365 1 524 279 56 45 chr1 1791891 1792012 -240872341 + L1ME LINE L1 3042 3160 -3380 330 253 0 0 chr1 1792012 1792091 -240872262 - MER96 DNA MER1_type? 0 175 97 918 292 45 14 chr1 1792135 1792553 -240871800 + L1ME LINE L1 4301 4731 -1809 393 118 0 128 chr1 1792556 1792658 -240871695 - LTR52 LTR ERVL 0 421 333 528 167 0 0 chr1 1792659 1792803 -240871550 + (CA)n Simple_repeat Simple_repeat 1 144 0 863 260 17 51 chr1 1792805 1793155 -240871198 - LTR52 LTR ERVL -80 341 4 1612 147 44 34 chr1 1793216 1793751 -240870602 + MER51A LTR ERV1 1 622 -12 902 301 135 26 chr1 1793772 1794056 -240870297 + L1ME LINE L1 4768 5020 -1520 2232 125 0 0 chr1 1794056 1794367 -240869986 + AluSx SINE Alu 1 311 -1 902 301 135 26 chr1 1794367 1794732 -240869621 + L1ME LINE L1 5020 5488 -1052 1276 305 52 45 chr1 1794746 1794973 -240869380 + L1ME LINE L1 5573 5797 -767 2228 100 3 10 chr1 1794973 1795282 -240869071 + AluSg SINE Alu 1 307 -3 1276 305 52 45 chr1 1795282 1795860 -240868493 + L1ME LINE L1 5797 6389 -175 3391 141 11 19 chr1 1795978 1796509 -240867844 + MER1A DNA MER1_type 1 527 0 180 0 0 0 chr1 1797347 1797367 -240866986 + (A)n Simple_repeat Simple_repeat 1 20 0 295 242 40 0 chr1 1798929 1799028 -240865325 + MER82 DNA MER2_type 338 440 -213 251 296 37 0 chr1 1799067 1799148 -240865205 + MER82 DNA MER2_type 570 653 0 234 48 0 95 chr1 1799148 1799190 -240865163 + L1MB7 LINE L1 6099 6136 -48 1006 226 169 10 chr1 1801166 1801480 -240862873 - MLT1A1 LTR MaLR -1 364 1 343 229 74 16 chr1 1801551 1801673 -240862680 - MER117 DNA MER1_type -34 163 35 193 344 16 0 chr1 1801821 1801885 -240862468 + L2 LINE L2 3195 3259 -13 23 0 0 0 chr1 1802750 1802773 -240861580 + GC_rich Low_complexity Low_complexity 1 23 0 430 248 26 0 chr1 1803037 1803150 -240861203 - MER3 DNA MER1_type -25 184 69 3791 98 4 6 chr1 1805187 1805699 -240858654 + MER9 LTR ERVK 1 511 0 347 214 30 15 chr1 1805777 1805908 -240858445 + CT-rich Low_complexity Low_complexity 2 134 0 673 277 33 5 chr1 1806130 1806314 -240858039 - MER53 DNA DNA 0 189 1 843 222 111 0 chr1 1807619 1807880 -240856473 + MLT1B LTR MaLR 94 383 -7 453 19 0 0 chr1 1808685 1808739 -240855614 + (CA)n Simple_repeat Simple_repeat 2 55 0 1614 190 169 5 chr1 1808864 1809232 -240855121 + MSTA LTR MaLR 1 428 0 265 214 18 0 chr1 1809467 1809523 -240854830 + MLT1D LTR MaLR 1 57 -448 645 252 66 34 chr1 1809531 1809912 -240854441 - MLT2B1 LTR ERVL -1 413 2 1333 198 88 35 chr1 1809915 1810315 -240854038 + MLT1D LTR MaLR 77 497 -8 320 295 29 22 chr1 1810316 1810455 -240853898 - L1ME LINE L1 -293 5828 5689 416 300 6 6 chr1 1813782 1814327 -240850026 + (TG)n Simple_repeat Simple_repeat 1 545 0 285 315 0 0 chr1 1814367 1814440 -240849913 + MIR SINE MIR 76 148 -114 507 164 214 0 chr1 1814440 1814580 -240849773 - MER69A DNA AcHobo -3 174 5 349 372 0 16 chr1 1814821 1815004 -240849349 + (CA)n Simple_repeat Simple_repeat 1 180 0 3277 127 45 0 chr1 1816165 1816654 -240847699 - MER75 DNA T2_type -3 511 1 340 287 110 27 chr1 1816704 1817137 -240847216 + MLT1H LTR MaLR 31 540 -2 1542 178 4 11 chr1 1817137 1817406 -240846947 - AluJb SINE Alu -45 267 1 1873 145 7 10 chr1 1818160 1818456 -240845897 + AluJb SINE Alu 1 295 -17 4385 131 101 47 chr1 1819138 1819918 -240844435 - LTR12 LTR ERV1 0 826 5 2272 171 48 34 chr1 1819945 1820528 -240843825 - pTR5 LTR ERV1 -1111 1327 737 1325 240 110 2 chr1 1820732 1821141 -240843212 - MLT1D LTR MaLR -52 453 1 783 124 91 0 chr1 1821390 1821511 -240842842 - FLAM_C SINE Alu -1 132 1 23 54 0 0 chr1 1821511 1821548 -240842805 + AT_rich Low_complexity Low_complexity 1 37 0 226 259 73 134 chr1 1822321 1822568 -240841785 - L2 LINE L2 -11 3261 3030 202 306 92 0 chr1 1825525 1825623 -240838730 - L2 LINE L2 -30 3242 3136 209 185 37 0 chr1 1825740 1825794 -240838559 - L2 LINE L2 -372 2942 2887 * 227 322 63 28 chr1 1825786 1825929 -240838424 + MIR SINE MIR 37 184 -78 867 220 258 0 chr1 1826083 1826420 -240837933 + MER31B LTR ERV1 43 466 0 206 241 0 19 chr1 1827232 1827286 -240837067 + CT-rich Low_complexity Low_complexity 1 53 0 337 306 133 31 chr1 1833836 1834062 -240830291 - L2 LINE L2 -344 2970 2702 2244 106 0 0 chr1 1834062 1834355 -240829998 - AluSq SINE Alu -19 294 2 337 306 133 31 chr1 1834355 1834445 -240829908 - L2 LINE L2 -612 2702 2622 299 317 0 0 chr1 1834445 1834625 -240829728 + GA-rich Low_complexity Low_complexity 1 180 0 * 336 300 0 0 chr1 1834514 1834694 -240829659 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 362 289 0 0 chr1 1834713 1834886 -240829467 + (GCTG)n Simple_repeat Simple_repeat 1 173 0 338 321 0 0 chr1 1834809 1835155 -240829198 + (TGGG)n Simple_repeat Simple_repeat 1 346 0 * 295 328 0 0 chr1 1835137 1835311 -240829042 + (GCTG)n Simple_repeat Simple_repeat 4 177 0 * 201 353 82 0 chr1 1835795 1835880 -240828473 + MIR SINE MIR 155 246 -16 803 265 95 33 chr1 1837185 1837521 -240826832 - MLT1A1 LTR MaLR -8 357 1 657 261 96 58 chr1 1837750 1838169 -240826184 + MLT1H LTR MaLR 14 490 -59 1349 136 10 5 chr1 1838171 1838377 -240825976 - AluJb SINE Alu -19 293 87 313 185 0 0 chr1 1838377 1838442 -240825911 + MLT1H LTR MaLR 485 549 0 687 312 44 16 chr1 1838539 1838969 -240825384 + L1ME LINE L1 3851 4292 -1854 1328 208 14 41 chr1 1839133 1839427 -240824926 + AluJb SINE Alu 10 295 -17 211 260 0 19 chr1 1839461 1839565 -240824788 + GA-rich Low_complexity Low_complexity 3 104 0 237 306 0 10 chr1 1839593 1839691 -240824662 + L1ME LINE L1 4741 4837 -1309 465 252 67 20 chr1 1839827 1840255 -240824098 + L1ME LINE L1 5026 5481 -689 237 155 14 84 chr1 1840257 1840328 -240824025 + L1P5 LINE L1 5397 5462 -692 981 285 138 42 chr1 1840406 1841162 -240823191 + L1ME LINE L1 51 918 -5152 1506 172 69 0 chr1 1841162 1841424 -240822929 + AluJb SINE Alu 31 310 -2 981 285 138 42 chr1 1841424 1841615 -240822738 + L1ME LINE L1 918 1089 -4981 330 281 94 25 chr1 1842358 1842518 -240821835 - MIR SINE MIR -28 234 64 1822 113 58 0 chr1 1844312 1844614 -240819739 - AluSx SINE Alu 0 318 1 540 92 92 0 chr1 1844980 1845143 -240819210 + (CA)n Simple_repeat Simple_repeat 1 178 0 185 370 151 0 chr1 1848273 1848392 -240815961 + MIR SINE MIR 118 254 -8 247 292 0 0 chr1 1848404 1848493 -240815860 + (CAGCC)n Simple_repeat Simple_repeat 1 89 0 1894 216 50 34 chr1 1848565 1849397 -240814956 + LTR13 LTR ERVK 1 901 -106 348 250 0 0 chr1 1850614 1850686 -240813667 + MIR SINE MIR 78 149 -59 7002 182 43 118 chr1 1850689 1852140 -240812213 + L1MB3 LINE L1 2878 4436 -1710 712 189 57 46 chr1 1852140 1852315 -240812038 + MER8 DNA MER2_type 1 177 -62 7002 182 43 118 chr1 1852315 1852348 -240812005 + L1MB3 LINE L1 4436 4470 -1676 341 186 43 0 chr1 1852348 1852418 -240811935 - Tigger2 DNA MER2_type -2645 73 1 7002 182 43 118 chr1 1852418 1853328 -240811025 + L1MB3 LINE L1 4470 5319 -827 1367 94 5 5 chr1 1853328 1853520 -240810833 - AluSg/x SINE Alu -24 288 97 4203 171 9 28 chr1 1853527 1853825 -240810528 + L1MB3 LINE L1 5317 5619 -564 2265 95 0 3 chr1 1853825 1854131 -240810222 + AluSg SINE Alu 1 305 -5 4203 171 9 28 chr1 1854131 1854716 -240809637 + L1MB3 LINE L1 5619 6183 0 353 193 0 0 chr1 2055975 2056032 -240608321 - AluJ/FLAM SINE Alu -245 57 1 1030 230 111 51 chr1 2056749 2057180 -240607173 - MLT1C LTR MaLR 0 467 11 837 176 20 0 chr1 2058043 2058191 -240606162 + FRAM SINE Alu 4 154 -22 1315 152 94 18 chr1 2059658 2059935 -240604418 - MER7A DNA MER2_type 0 346 51 1540 152 141 0 chr1 2060323 2060586 -240603767 + AluJb SINE Alu 1 300 -12 2610 56 0 0 chr1 2061305 2061607 -240602746 - AluY SINE Alu -9 302 1 1541 130 0 0 chr1 2061805 2062033 -240602320 + AluSg/x SINE Alu 81 310 0 858 236 86 17 chr1 2062524 2062825 -240601528 + MER33 DNA MER1_type 1 322 -2 210 236 0 0 chr1 2062933 2062988 -240601365 + CT-rich Low_complexity Low_complexity 1 55 0 25 51 0 0 chr1 2063295 2063334 -240601019 + AT_rich Low_complexity Low_complexity 1 39 0 2171 96 30 23 chr1 2063619 2063920 -240600433 - AluSp SINE Alu -8 305 3 33 43 0 0 chr1 2063968 2064015 -240600338 + AT_rich Low_complexity Low_complexity 1 47 0 1447 133 13 4 chr1 2064094 2064319 -240600034 + AluJb SINE Alu 73 299 -13 1722 127 0 4 chr1 2065013 2065249 -240599104 - AluSq SINE Alu 0 313 79 784 132 0 150 chr1 2065250 2065417 -240598936 - AluSc SINE Alu -35 274 133 2417 79 0 3 chr1 2065682 2065973 -240598380 + AluSg SINE Alu 2 291 -19 1845 145 91 0 chr1 2066090 2066366 -240597987 + AluJo SINE Alu 1 301 -11 2080 144 0 0 chr1 2066656 2066955 -240597398 + AluSx SINE Alu 1 299 -13 2495 37 27 7 chr1 2067364 2067662 -240596691 + AluY SINE Alu 1 304 -7 2070 131 17 7 chr1 2068904 2069202 -240595151 + AluSx SINE Alu 1 301 -11 2270 121 0 3 chr1 2069206 2069513 -240594840 + AluSx SINE Alu 1 306 -6 266 243 196 0 chr1 2069745 2069852 -240594501 + MIR SINE MIR 15 142 -120 2069 128 7 0 chr1 2071293 2071583 -240592770 + AluJo SINE Alu 1 292 -20 599 268 141 19 chr1 2071584 2071797 -240592556 + MIR SINE MIR 21 259 -3 225 0 0 0 chr1 2073248 2073273 -240591080 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 93 3 17 chr1 2073418 2073720 -240590633 - AluY SINE Alu -13 298 1 729 213 128 0 chr1 2073720 2073861 -240590492 - FRAM SINE Alu -5 161 3 2190 96 21 10 chr1 2074068 2074359 -240589994 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr1 2076055 2076079 -240588274 + AT_rich Low_complexity Low_complexity 1 24 0 2276 98 14 0 chr1 2076406 2076701 -240587652 + AluSc SINE Alu 1 299 -10 1921 156 14 0 chr1 2076705 2076994 -240587359 + AluJb SINE Alu 1 293 -19 234 250 16 16 chr1 2078577 2078641 -240585712 + L2 LINE L2 3207 3270 -2 2452 67 0 13 chr1 2078784 2079097 -240585256 - AluY SINE Alu -2 309 1 712 156 16 8 chr1 2079143 2079271 -240585082 - MER46A DNA MER2_type 0 236 108 354 316 33 0 chr1 2080919 2081071 -240583282 + L1MB1 LINE L1 6005 6161 -7 357 211 87 0 chr1 2081641 2081745 -240582608 - L2 LINE L2 -18 3295 3183 572 190 83 0 chr1 2081901 2082022 -240582331 - L1MB3 LINE L1 -1 6182 6052 1785 179 13 16 chr1 2082069 2082376 -240581977 + AluJb SINE Alu 1 306 -6 1562 121 8 32 chr1 2082471 2082720 -240581633 - AluJb SINE Alu -64 248 6 21 82 0 0 chr1 2083096 2083145 -240581208 + AT_rich Low_complexity Low_complexity 1 49 0 236 274 0 16 chr1 2084077 2084139 -240580214 - L1ME3A LINE L1 -199 5971 5911 285 329 121 9 chr1 2084159 2084390 -240579963 - L1ME3A LINE L1 -358 5812 5556 253 342 40 13 chr1 2084931 2085156 -240579197 - L1ME3A LINE L1 -832 5314 5084 451 111 0 141 chr1 2085166 2085205 -240579148 - MSTA LTR MaLR 0 428 410 2315 77 7 0 chr1 2085205 2085492 -240578861 + AluSp SINE Alu 1 289 -24 451 111 0 141 chr1 2085492 2085551 -240578802 - MSTA LTR MaLR -18 410 344 234 116 0 0 chr1 2087329 2087372 -240576981 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 265 296 48 0 chr1 2087444 2087569 -240576784 - L1MC5 LINE L1 -106 7855 7725 1175 276 95 49 chr1 2087709 2088564 -240575789 - L1MC5 LINE L1 -446 7515 6615 346 280 62 52 chr1 2089574 2089767 -240574586 - MLT1E1 LTR MaLR -163 491 297 247 258 82 44 chr1 2089956 2090115 -240574238 - L1ME LINE L1 -5124 946 782 844 226 118 19 chr1 2090115 2090438 -240573915 - L1MB7 LINE L1 -9 6175 5821 251 190 35 0 chr1 2090449 2090507 -240573846 - L1ME LINE L1 -5297 773 714 260 356 56 23 chr1 2090532 2090748 -240573605 + L1M4 LINE L1 4943 5165 -981 398 136 99 12 chr1 2090754 2090835 -240573518 + L1MB2 LINE L1 6028 6115 -56 288 216 58 90 chr1 2090931 2091150 -240573203 - L2 LINE L2 -535 2779 2499 252 264 169 41 chr1 2091557 2091871 -240572482 - MLT1H LTR MaLR -111 438 85 2089 102 3 39 chr1 2092236 2092541 -240571812 - AluSx SINE Alu -18 294 1 1902 127 57 0 chr1 2093506 2093789 -240570564 + AluSx SINE Alu 1 299 -13 1184 125 6 0 chr1 2095622 2095790 -240568563 - AluSg/x SINE Alu -24 288 120 333 216 0 0 chr1 2095890 2095978 -240568375 + G-rich Low_complexity Low_complexity 1 88 0 209 159 45 0 chr1 2096004 2096048 -240568305 + G-rich Low_complexity Low_complexity 6 51 0 264 284 0 0 chr1 2096062 2096157 -240568196 + G-rich Low_complexity Low_complexity 1 95 0 823 105 0 9 chr1 2096244 2096358 -240567995 + AluSg/x SINE Alu 182 294 -16 183 156 0 0 chr1 2096574 2096606 -240567747 + (TA)n Simple_repeat Simple_repeat 2 33 0 2395 74 0 49 chr1 2096731 2097055 -240567298 - AluSg SINE Alu -2 308 1 21 36 0 0 chr1 2097253 2097281 -240567072 + AT_rich Low_complexity Low_complexity 1 28 0 232 36 0 0 chr1 2098365 2098393 -240565960 + MIR SINE MIR 116 143 -119 2477 84 0 0 chr1 2098870 2099167 -240565186 - AluSx SINE Alu -15 297 1 1273 161 0 28 chr1 2099173 2099391 -240564962 - AluJo SINE Alu -13 299 88 3075 100 16 9 chr1 2099482 2099931 -240564422 - LTR3b LTR ERVK -48 452 1 348 210 180 0 chr1 2099987 2100087 -240564266 + MSTC LTR MaLR 11 128 -268 1830 159 10 0 chr1 2100110 2100400 -240563953 + AluJb SINE Alu 1 293 -19 2502 65 3 0 chr1 2100403 2100695 -240563658 + AluSp SINE Alu 1 293 -20 466 189 90 7 chr1 2100723 2100881 -240563472 + MSTC LTR MaLR 226 428 0 1829 167 7 3 chr1 2100891 2101185 -240563168 - AluJb SINE Alu -13 299 5 2129 133 3 0 chr1 2101216 2101509 -240562844 + AluSx SINE Alu 1 294 -18 278 153 125 0 chr1 2101589 2101661 -240562692 - L1MEc LINE L1 -6048 348 268 1625 126 168 3 chr1 2101688 2102022 -240562331 + MSTA LTR MaLR 1 389 -39 2332 64 0 37 chr1 2102022 2102355 -240561998 + AluY SINE Alu 1 322 0 1954 153 142 14 chr1 2102370 2102861 -240561492 - LOR1-int LTR ERV1 -3269 3936 1515 8221 60 14 5 chr1 2102861 2103859 -240560494 + LTR13 LTR ERVK 1 1007 0 1175 146 19 5 chr1 2103859 2104065 -240560288 + HERVK13 LTR ERVK 1 209 -7907 705 228 213 68 chr1 2104056 2104573 -240559780 + HERVK13 LTR ERVK 727 1318 -6798 * 421 283 12 58 chr1 2104560 2104733 -240559620 + HERVK13 LTR ERVK 3965 4129 -3987 * 3085 244 3 3 chr1 2104724 2106133 -240558220 + HERVK13 LTR ERVK 4572 6092 -2024 * 6199 217 3 24 chr1 2106122 2106356 -240557997 + HERVK13 LTR ERVK 6733 6970 -1146 2404 74 3 0 chr1 2106356 2106665 -240557688 + AluY SINE Alu 1 310 -1 6199 217 3 24 chr1 2106665 2107843 -240556510 + HERVK13 LTR ERVK 6970 8116 0 3702 40 4 0 chr1 2107843 2108320 -240556033 + LTR13 LTR ERVK 1 479 -528 1009 248 4 18 chr1 2108323 2108597 -240555756 - HERVK13 LTR ERVK -2972 5144 4875 1995 119 9 3 chr1 2108599 2108926 -240555427 + THE1A LTR MaLR 27 355 0 1873 129 5 18 chr1 2108926 2109357 -240554996 - LTR38-int LTR ERV1 -1097 689 364 * 2281 173 70 0 chr1 2109343 2109787 -240554566 - LTR38-int LTR ERV1 -1310 476 2 1727 152 29 79 chr1 2109788 2110208 -240554145 - LTR38 LTR ERV1 0 556 158 2176 105 20 0 chr1 2110210 2110516 -240553837 - AluSx SINE Alu 0 312 1 1994 140 11 91 chr1 2110562 2110796 -240553557 - MER4D LTR ERV1 -468 435 184 2219 115 0 0 chr1 2110796 2111101 -240553252 - AluSx SINE Alu -7 305 1 1994 140 11 91 chr1 2111101 2111312 -240553041 - MER4D LTR ERV1 -719 184 26 2382 71 0 6 chr1 2111312 2111623 -240552730 - AluY SINE Alu -2 309 1 1994 140 11 91 chr1 2111623 2111640 -240552713 - MER4D LTR ERV1 -877 26 9 1742 171 4 0 chr1 2111641 2111947 -240552406 + AluJb SINE Alu 1 307 0 1827 126 16 55 chr1 2111956 2112266 -240552087 + AluSx SINE Alu 1 298 -14 2157 99 3 48 chr1 2112373 2112748 -240551605 + MER4A LTR ERV1 1 358 -306 1655 168 7 7 chr1 2112789 2113099 -240551254 + MER4A LTR ERV1 355 664 0 183 302 95 0 chr1 2114361 2114424 -240549929 - MIR SINE MIR -62 200 132 240 297 33 33 chr1 2114490 2114581 -240549772 + L2 LINE L2 3181 3271 -1 2312 85 3 0 chr1 2114713 2115018 -240549335 - AluSx SINE Alu -6 306 1 1736 107 85 0 chr1 2115151 2115422 -240548931 + AluJb SINE Alu 1 294 -18 3875 146 35 50 chr1 2115451 2115570 -240548783 - LTR8A LTR ERV1 0 727 608 2236 101 3 0 chr1 2115570 2115876 -240548477 - AluY SINE Alu -4 307 1 3875 146 35 50 chr1 2115876 2116398 -240547955 - LTR8A LTR ERV1 -119 608 96 1897 112 69 0 chr1 2116398 2116674 -240547679 + AluSp SINE Alu 1 295 -18 3875 146 35 50 chr1 2116674 2116769 -240547584 - LTR8A LTR ERV1 -631 96 1 2215 78 0 4 chr1 2117045 2117326 -240547027 + AluSc SINE Alu 14 293 -16 2053 132 0 0 chr1 2117737 2118026 -240546327 + AluJb SINE Alu 1 289 -23 2298 96 3 0 chr1 2118035 2118338 -240546015 + AluSp SINE Alu 1 304 -9 244 274 12 12 chr1 2122687 2122771 -240541582 + GA-rich Low_complexity Low_complexity 1 84 0 232 229 71 14 chr1 2123062 2123132 -240541221 + MIR SINE MIR 110 183 -79 1834 154 10 7 chr1 2123280 2123573 -240540780 - AluSx SINE Alu -18 294 1 2159 117 0 0 chr1 2123624 2123922 -240540431 + AluSx SINE Alu 6 303 -9 2184 96 14 0 chr1 2124782 2125075 -240539278 - AluSp SINE Alu -16 297 1 2241 113 0 0 chr1 2126351 2126652 -240537701 - AluSq SINE Alu -12 301 1 1776 174 19 6 chr1 2126658 2126974 -240537379 - 7SLRNA srpRNA srpRNA 0 320 1 1563 101 5 5 chr1 2127195 2127412 -240536941 + AluSp SINE Alu 2 218 -95 1136 139 0 6 chr1 2127412 2127584 -240536769 + AluSp SINE Alu 143 313 0 1924 141 3 3 chr1 2127807 2128091 -240536262 - AluJo SINE Alu -28 284 1 220 204 19 37 chr1 2128553 2128607 -240535746 - L3 LINE CR1 -319 1258 1206 2040 110 17 0 chr1 2128966 2129258 -240535095 - AluSc SINE Alu -7 302 6 300 85 64 0 chr1 2129258 2129305 -240535048 - Alu SINE Alu -250 50 1 274 306 12 0 chr1 2129530 2129615 -240534738 + MER7A DNA MER2_type 1 84 -262 189 107 0 0 chr1 2131153 2131181 -240533172 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 252 328 46 27 chr1 2134755 2134881 -240529472 - MIR SINE MIR -46 162 33 203 253 0 40 chr1 2137203 2137278 -240527075 + G-rich Low_complexity Low_complexity 6 77 0 191 122 0 24 chr1 2137380 2137421 -240526932 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 640 236 10 45 chr1 2138697 2138896 -240525457 + MER63A DNA MER1_type 1 192 -18 236 254 16 16 chr1 2139109 2139172 -240525181 + CT-rich Low_complexity Low_complexity 3 65 0 183 339 57 73 chr1 2140290 2140414 -240523939 - MIR SINE MIR -113 149 28 241 231 62 15 chr1 2141047 2141112 -240523241 - L2 LINE L2 -1 3312 3245 1816 162 7 13 chr1 2141569 2141877 -240522476 + AluJb SINE Alu 1 306 -6 277 341 41 32 chr1 2142044 2142167 -240522186 + MIR SINE MIR 124 247 -15 2294 103 0 0 chr1 2142827 2143128 -240521225 + AluSc SINE Alu 1 301 -8 719 288 126 3 chr1 2143461 2143787 -240520566 + HAL1 LINE L1 1 366 -2141 1717 195 13 3 chr1 2143800 2144108 -240520245 + AluJb SINE Alu 1 311 -1 1333 249 167 34 chr1 2144205 2144913 -240519440 + HAL1 LINE L1 856 1683 -824 2175 117 3 0 chr1 2144913 2145212 -240519141 - AluSq SINE Alu -13 300 1 1333 249 167 34 chr1 2145212 2145301 -240519052 + HAL1 LINE L1 1683 1759 -748 657 248 109 29 chr1 2145384 2145731 -240518622 + HAL1 LINE L1 2133 2507 0 300 286 0 0 chr1 2146630 2146714 -240517639 + CT-rich Low_complexity Low_complexity 2 85 0 212 149 21 0 chr1 2147950 2147997 -240516356 + C-rich Low_complexity Low_complexity 3 50 0 235 289 67 22 chr1 2148162 2148297 -240516056 - MIR3 SINE MIR -61 147 7 489 269 0 8 chr1 2149134 2149280 -240515073 + L1MDa LINE L1 1904 2073 -4493 838 269 46 9 chr1 2149281 2149605 -240514748 + L1MDa LINE L1 3222 3557 -2983 349 139 119 40 chr1 2149642 2149743 -240514610 + L1MC4 LINE L1 7918 8026 -16 474 306 77 32 chr1 2149828 2150076 -240514277 + MLT1K LTR MaLR 264 522 -66 228 245 0 0 chr1 2150144 2150193 -240514160 - L1ME LINE L1 -477 5644 5596 398 323 29 32 chr1 2150390 2150734 -240513619 + L1MDa LINE L1 3543 3885 -2655 2041 116 0 27 chr1 2150736 2151037 -240513316 - AluSg SINE Alu -17 293 1 1735 164 6 25 chr1 2151069 2151387 -240512966 + AluJb SINE Alu 1 312 0 531 155 0 31 chr1 2151402 2151480 -240512873 + AluJ/FRAM SINE Alu 216 292 -20 2150 102 7 0 chr1 2151480 2151774 -240512579 + AluSc SINE Alu 1 296 -13 531 155 0 31 chr1 2151774 2151792 -240512561 + AluJ/FRAM SINE Alu 292 309 -3 303 274 19 0 chr1 2151803 2151909 -240512444 + L1MDa LINE L1 3906 4013 -2527 1831 127 3 47 chr1 2151912 2152023 -240512330 + AluJb SINE Alu 2 116 -196 2336 73 3 3 chr1 2152023 2152325 -240512028 - AluY SINE Alu -9 302 1 1831 127 3 47 chr1 2152325 2152513 -240511840 + AluJb SINE Alu 116 288 -24 211 220 0 0 chr1 2152526 2152576 -240511777 + A-rich Low_complexity Low_complexity 1 50 0 257 289 0 10 chr1 2152600 2152704 -240511649 + L1MDa LINE L1 4025 4127 -2413 181 280 113 48 chr1 2153484 2153601 -240510752 + MIR3 SINE MIR 1 134 -74 2175 101 3 10 chr1 2153601 2153907 -240510446 - AluSg1 SINE Alu -5 304 1 181 280 113 48 chr1 2153907 2153957 -240510396 + MIR3 SINE MIR 134 179 -29 184 343 45 0 chr1 2155287 2155354 -240508999 + MIR3 SINE MIR 112 181 -27 2241 83 9 46 chr1 2156330 2156655 -240507698 + AluSp SINE Alu 1 313 0 256 194 54 75 chr1 2157587 2157680 -240506673 - LTR45B LTR ERV1 -1 488 398 1267 177 165 11 chr1 2157689 2157983 -240506370 + AluSg SINE Alu 1 334 0 2389 58 0 0 chr1 2158065 2158356 -240505997 + AluY SINE Alu 1 291 -20 3882 190 31 52 chr1 2158575 2159565 -240504788 - LTR5 LTR ERVK 0 969 1 1475 199 39 77 chr1 2159689 2159783 -240504570 + MER7A DNA MER2_type 1 97 -2941 2384 79 3 0 chr1 2159783 2160086 -240504267 + AluY SINE Alu 1 304 -7 1475 199 39 77 chr1 2160086 2160353 -240504000 + MER7A DNA MER2_type 97 346 0 3872 181 79 51 chr1 2160819 2161747 -240502606 + LTR13 LTR ERVK 1 954 0 1139 106 0 0 chr1 2162049 2162209 -240502144 + AluSg/x SINE Alu 153 312 0 22 0 0 0 chr1 2162620 2162642 -240501711 + GC_rich Low_complexity Low_complexity 1 22 0 614 347 157 2 chr1 2164366 2164781 -240499572 - L2 LINE L2 -1 3312 2834 221 259 193 7 chr1 2164843 2164978 -240499375 - L2 LINE L2 -637 2677 2518 221 0 0 33 chr1 2165436 2165466 -240498887 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2096 73 18 0 chr1 2165508 2165782 -240498571 - AluY SINE Alu -32 279 1 1942 122 7 26 chr1 2166032 2166336 -240498017 - AluJb SINE Alu -14 298 1 278 309 112 45 chr1 2167386 2167609 -240496744 - L2 LINE L2 -2 3270 3033 3072 114 109 80 chr1 2168267 2168883 -240495470 - MER51A LTR ERV1 0 634 1 1868 107 52 10 chr1 2169231 2169521 -240494832 + AluSx SINE Alu 1 302 -10 2320 91 0 0 chr1 2172090 2172388 -240491965 - AluSg SINE Alu -12 298 1 283 324 56 21 chr1 2174745 2174887 -240489466 + MIR SINE MIR 3 149 -113 194 250 31 16 chr1 2177978 2178042 -240486311 + MIR SINE MIR 79 143 -119 262 299 86 0 chr1 2179467 2179584 -240484769 - MIR SINE MIR -72 190 64 182 325 51 26 chr1 2180270 2180387 -240483966 - L2 LINE L2 -144 3128 3009 1574 153 29 70 chr1 2180950 2181264 -240483089 - AluJo SINE Alu -2 310 10 830 147 10 28 chr1 2183027 2183570 -240480783 + (TCCA)n Simple_repeat Simple_repeat 1 532 0 789 137 6 27 chr1 2183590 2183773 -240480580 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 738 149 7 18 chr1 2183788 2184067 -240480286 + (TCCA)n Simple_repeat Simple_repeat 1 275 0 620 164 11 27 chr1 2184078 2184261 -240480092 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 753 185 4 15 chr1 2184287 2184558 -240479795 + (TCCA)n Simple_repeat Simple_repeat 1 268 0 253 109 36 18 chr1 2184559 2184614 -240479739 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 2230 101 0 0 chr1 2184931 2185229 -240479124 - AluSx SINE Alu -14 298 1 400 306 38 48 chr1 2186782 2187305 -240477048 - TAR1 Satellite telomeric -570 1541 1024 206 385 19 0 chr1 2189012 2189116 -240475237 - MIR3 SINE MIR -7 201 96 1962 105 30 23 chr1 2189750 2190029 -240474324 + AluSx SINE Alu 1 284 -28 414 0 0 0 chr1 2190029 2190075 -240474278 + (CA)n Simple_repeat Simple_repeat 1 46 0 1962 105 30 23 chr1 2190075 2190099 -240474254 + AluSx SINE Alu 284 306 -6 189 0 0 0 chr1 2191734 2191755 -240472598 + (CCCCG)n Simple_repeat Simple_repeat 5 25 0 345 275 101 0 chr1 2197097 2197235 -240467118 + MIR SINE MIR 20 171 -91 306 106 0 0 chr1 2198097 2198144 -240466209 + (CA)n Simple_repeat Simple_repeat 1 47 0 186 349 177 16 chr1 2198731 2198923 -240465430 - MIR SINE MIR -6 256 34 325 333 8 8 chr1 2199114 2199240 -240465113 + (TG)n Simple_repeat Simple_repeat 1 126 0 401 343 129 5 chr1 2201336 2201537 -240462816 + MIR SINE MIR 2 227 -35 336 308 19 9 chr1 2203613 2203720 -240460633 - MIR SINE MIR -65 197 90 23 0 0 0 chr1 2203836 2203859 -240460494 + GC_rich Low_complexity Low_complexity 1 23 0 283 286 39 77 chr1 2204635 2204777 -240459576 + L1M4 LINE L1 5735 5871 -307 811 181 7 7 chr1 2204783 2204932 -240459421 + FRAM SINE Alu 19 167 -9 201 139 28 0 chr1 2205498 2205534 -240458819 + L2 LINE L2 3137 3173 -99 545 298 99 8 chr1 2205539 2205801 -240458552 + MER33 DNA MER1_type 13 298 -26 418 257 76 76 chr1 2208029 2208157 -240456196 + MIR SINE MIR 23 153 -109 2125 111 0 13 chr1 2208157 2208463 -240455890 + AluSx SINE Alu 1 302 -10 418 257 76 76 chr1 2208463 2208505 -240455848 + MIR SINE MIR 152 193 -69 2029 64 64 4 chr1 2209172 2209439 -240454914 - AluSx SINE Alu -17 295 13 236 234 32 53 chr1 2210157 2210251 -240454102 + C-rich Low_complexity Low_complexity 4 95 0 212 364 96 11 chr1 2212862 2213049 -240451304 - L2 LINE L2 -842 2472 2270 234 298 276 0 chr1 2213991 2214219 -240450134 + L2 LINE L2 2425 2715 -599 233 232 40 0 chr1 2214968 2215067 -240449286 - MSR1 Satellite Satellite -1 110 8 241 227 41 0 chr1 2215179 2215276 -240449077 - MSR1 Satellite Satellite -1 110 10 246 206 41 0 chr1 2215354 2215591 -240448762 - MSR1 Satellite Satellite -1 246 1 349 184 21 100 chr1 2215652 2215842 -240448511 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 246 206 41 0 chr1 2215882 2216014 -240448339 - MSR1 Satellite Satellite -1 137 1 289 188 0 134 chr1 2216040 2216242 -240448111 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 200 264 127 0 chr1 2216389 2216483 -240447870 - MIR SINE MIR -56 152 46 227 310 30 50 chr1 2216851 2216951 -240447402 + L2 LINE L2 3216 3313 0 189 225 34 0 chr1 2217832 2217921 -240446432 + (CA)n Simple_repeat Simple_repeat 1 92 0 219 317 10 10 chr1 2217948 2218049 -240446304 + (CA)n Simple_repeat Simple_repeat 1 101 0 276 120 0 0 chr1 2222252 2222302 -240442051 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 333 358 40 0 chr1 2223054 2223205 -240441148 - MIR SINE MIR -78 184 28 534 256 235 21 chr1 2226043 2226422 -240437931 + MLT1K LTR MaLR 19 478 -110 337 190 13 25 chr1 2226562 2226641 -240437712 + MLT1K LTR MaLR 452 529 -59 281 323 50 0 chr1 2228930 2229029 -240435324 - MIR SINE MIR -88 174 71 260 302 62 10 chr1 2229498 2229594 -240434759 - MIR3 SINE MIR -41 167 67 597 294 11 0 chr1 2229606 2229783 -240434570 + L1MB5 LINE L1 5698 5876 -298 372 337 97 42 chr1 2229862 2230550 -240433803 + L1M4c LINE L1 796 1493 -4891 253 318 121 15 chr1 2231084 2231216 -240433137 - MER5A DNA MER1_type 0 189 44 1666 178 0 35 chr1 2231961 2232275 -240432078 + AluJo SINE Alu 1 303 -9 408 232 126 0 chr1 2232951 2233102 -240431251 + MER20 DNA MER1_type 2 171 -48 254 260 82 48 chr1 2233202 2233348 -240431005 - MIR3 SINE MIR -55 153 3 333 340 0 38 chr1 2233504 2233689 -240430664 + C-rich Low_complexity Low_complexity 2 179 0 383 254 6 42 chr1 2233716 2233881 -240430472 + CT-rich Low_complexity Low_complexity 6 164 0 239 274 105 0 chr1 2235920 2236015 -240428338 - MIR SINE MIR -124 138 34 527 291 31 41 chr1 2236355 2236551 -240427802 + MIR SINE MIR 55 248 -14 216 307 160 40 chr1 2238204 2238354 -240425999 - MIR SINE MIR -34 228 61 208 250 111 28 chr1 2239062 2239134 -240425219 + L2 LINE L2 3232 3309 -4 2223 103 3 7 chr1 2239273 2239583 -240424770 - AluSx SINE Alu -3 309 1 198 319 43 11 chr1 2239759 2239853 -240424500 - MIR SINE MIR -103 159 63 313 374 9 9 chr1 2241257 2241364 -240422989 - L1MC5 LINE L1 -167 7794 7688 240 188 25 75 chr1 2241364 2241418 -240422935 + MER116 DNA Mariner 1 51 -29 288 0 0 0 chr1 2241418 2241450 -240422903 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 188 25 75 chr1 2241450 2241475 -240422878 + MER116 DNA Mariner 51 76 -4 2273 94 0 7 chr1 2242189 2242497 -240421856 - AluSc SINE Alu -3 306 1 1069 196 78 156 chr1 2242560 2243100 -240421253 - MLT1D LTR MaLR -7 498 1 191 227 23 0 chr1 2243558 2243602 -240420751 - MIR SINE MIR -24 238 194 873 201 10 45 chr1 2243605 2243804 -240420549 + AluJo SINE Alu 91 282 -30 2033 97 50 13 chr1 2243812 2244111 -240420242 - AluSq SINE Alu -1 312 3 1109 161 0 0 chr1 2244131 2244323 -240420030 + AluSg/x SINE Alu 121 312 0 259 175 225 0 chr1 2246111 2246191 -240418162 + MER39 LTR ERV1 291 388 -319 2096 76 69 3 chr1 2246243 2246532 -240417821 - AluY SINE Alu -3 308 1 412 324 23 6 chr1 2246558 2246734 -240417619 + MER39 LTR ERV1 500 678 -29 188 246 77 31 chr1 2246836 2246901 -240417452 + MIR SINE MIR 86 153 -109 392 182 149 41 chr1 2247239 2247360 -240416993 + MER34C LTR ERV1 4 137 -448 266 250 93 9 chr1 2247578 2247686 -240416667 + LTR48 LTR ERV1 616 732 -55 1082 116 12 6 chr1 2247893 2248057 -240416296 - FRAM SINE Alu -16 160 1 355 231 58 49 chr1 2248062 2248240 -240416113 + L1MCa LINE L1 1898 6983 -1339 1738 157 0 4 chr1 2248271 2248539 -240415814 - AluJb SINE Alu -45 267 1 1095 242 57 75 chr1 2248543 2249328 -240415025 + MER34C-int LTR ERV1 2617 3387 -1549 * 4310 198 44 47 chr1 2249323 2249986 -240414367 + MER34C-int LTR ERV1 3558 4219 -717 1688 123 53 49 chr1 2249986 2250291 -240414062 + AluSx SINE Alu 1 306 0 4310 198 44 47 chr1 2250291 2250806 -240413547 + MER34C-int LTR ERV1 4219 4734 -202 425 155 0 0 chr1 2250891 2250961 -240413392 + MER34C LTR ERV1 3 72 -513 465 96 0 0 chr1 2250961 2251034 -240413319 + MER34C LTR ERV1 1 73 -512 * 472 72 0 0 chr1 2251001 2251070 -240413283 + MER34C LTR ERV1 5 73 -512 457 87 0 0 chr1 2251037 2251106 -240413247 + MER34C LTR ERV1 5 73 -512 * 442 116 0 0 chr1 2251073 2251141 -240413212 + MER34C LTR ERV1 5 72 -513 825 195 30 37 chr1 2251141 2251377 -240412976 + MER34C LTR ERV1 1 234 -351 232 250 23 45 chr1 2251614 2251702 -240412651 + LTR48 LTR ERV1 702 787 0 378 213 56 9 chr1 2252287 2252395 -240411958 - Charlie4a DNA MER1_type -3 505 393 1156 235 24 42 chr1 2252447 2252856 -240411497 + MLT1C LTR MaLR 60 461 -6 991 274 54 3 chr1 2252870 2253184 -240411169 - Charlie4a DNA MER1_type -149 359 30 657 302 19 0 chr1 2253326 2253531 -240410822 + MIR SINE MIR 52 260 -2 2446 47 7 0 chr1 2253773 2254070 -240410283 - AluY SINE Alu -12 299 1 2093 127 0 0 chr1 2254561 2254861 -240409492 - AluSx SINE Alu -12 300 1 625 281 89 13 chr1 2255317 2255552 -240408801 - MIR SINE MIR -6 256 4 2044 125 3 13 chr1 2255766 2256077 -240408276 - AluSx SINE Alu -4 308 1 226 246 16 41 chr1 2257403 2257525 -240406828 + (CGGG)n Simple_repeat Simple_repeat 4 122 0 210 176 0 0 chr1 2259454 2259505 -240404848 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 575 176 61 14 chr1 2259528 2259676 -240404677 - MER53 DNA DNA -15 174 20 23 33 0 0 chr1 2260085 2260115 -240404238 + GC_rich Low_complexity Low_complexity 1 30 0 844 148 104 0 chr1 2263398 2263580 -240400773 - Tigger7 DNA MER2_type -3 2484 2284 * 1093 218 30 11 chr1 2263579 2263841 -240400512 - Tigger7 DNA MER2_type -233 500 234 288 297 48 0 chr1 2264423 2264588 -240399765 + (CCGCG)n Simple_repeat Simple_repeat 4 176 0 224 317 50 0 chr1 2264511 2264672 -240399681 + (CACGT)n Simple_repeat Simple_repeat 1 169 0 * 2291 80 7 0 chr1 2267209 2267509 -240396844 - AluSp SINE Alu -11 302 1 352 340 89 38 chr1 2267509 2267734 -240396619 - L1 LINE L1 -1225 4921 4667 663 216 0 0 chr1 2267734 2267859 -240396494 - FLAM_A SINE Alu -8 125 1 352 340 89 38 chr1 2267859 2267912 -240396441 - L1 LINE L1 -1479 4667 4618 444 320 20 0 chr1 2267976 2268176 -240396177 - L1 LINE L1 -3732 2414 2211 513 376 82 9 chr1 2268230 2268573 -240395780 - L1ME1 LINE L1 -16 6150 5783 287 333 0 18 chr1 2271330 2271441 -240392912 - L1MC5 LINE L1 -173 7788 7680 1857 164 27 0 chr1 2272108 2272406 -240391947 - AluJb SINE Alu -6 306 1 2135 116 0 0 chr1 2274135 2274427 -240389926 - AluJb SINE Alu -20 292 1 253 223 184 10 chr1 2275288 2275391 -240388962 - L2 LINE L2 -14 3258 3138 256 157 0 0 chr1 2275489 2275540 -240388813 - L2 LINE L2 -337 2976 2926 273 375 50 0 chr1 2275879 2275999 -240388354 + L2 LINE L2 2626 2751 -563 27 0 0 0 chr1 2276518 2276545 -240387808 + GC_rich Low_complexity Low_complexity 1 27 0 308 268 154 8 chr1 2276912 2277035 -240387318 + MIR SINE MIR 31 171 -91 21 0 0 0 chr1 2279158 2279179 -240385174 + AT_rich Low_complexity Low_complexity 1 21 0 2079 123 3 10 chr1 2279816 2280125 -240384228 + AluSc SINE Alu 3 309 0 2230 103 0 6 chr1 2280235 2280547 -240383806 + AluSx SINE Alu 1 310 -2 1990 146 11 76 chr1 2280547 2280758 -240383595 + MER4D LTR ERV1 19 187 -716 2201 118 0 0 chr1 2280758 2281063 -240383290 + AluSx SINE Alu 1 305 -7 1990 146 11 76 chr1 2281063 2281297 -240383056 + MER4D LTR ERV1 187 435 -468 1069 55 0 0 chr1 2281343 2281471 -240382882 + AluSq/x SINE Alu 1 128 -184 1948 142 0 0 chr1 2281693 2281996 -240382357 + AluSx SINE Alu 1 303 0 23 0 0 0 chr1 2283416 2283439 -240380914 + GC_rich Low_complexity Low_complexity 1 23 0 299 342 40 13 chr1 2285143 2285368 -240378985 - L1M4 LINE L1 -832 5314 5084 2058 123 10 0 chr1 2285417 2285717 -240378636 + AluSp SINE Alu 1 303 -10 1428 209 102 40 chr1 2489297 2489718 -240174635 + MLT1C LTR MaLR 21 467 0 254 198 26 129 chr1 2491335 2491451 -240172902 - L3 LINE CR1 -4 1573 1470 745 185 58 24 chr1 2492802 2493007 -240171346 + ORSL DNA AcHobo 44 255 -20 210 37 0 0 chr1 2493097 2493124 -240171229 + (CTG)n Simple_repeat Simple_repeat 3 29 0 198 300 14 0 chr1 2493496 2493566 -240170787 - MIR SINE MIR -171 91 21 215 308 205 8 chr1 2493587 2493704 -240170649 - MIR SINE MIR -81 181 42 242 279 99 36 chr1 2494415 2494526 -240169827 + MIR SINE MIR 18 135 -73 448 285 33 26 chr1 2494888 2495039 -240169314 - MIR SINE MIR -97 165 14 503 242 53 52 chr1 2495522 2495828 -240168525 + MLT1H LTR MaLR 82 382 -27 1965 122 91 28 chr1 2496624 2496976 -240167377 + THE1C LTR MaLR 1 374 -1 989 237 108 12 chr1 2496984 2497283 -240167070 - MLT1C LTR MaLR -150 355 6 299 371 74 25 chr1 2498273 2498556 -240165797 - L2 LINE L2 0 3272 2976 284 238 38 86 chr1 2498583 2498688 -240165665 + MIR SINE MIR 6 105 -157 525 262 0 21 chr1 2501830 2501971 -240162382 + L2 LINE L2 3162 3299 -14 517 194 29 0 chr1 2501992 2502167 -240162186 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 676 145 22 17 chr1 2502189 2502368 -240161985 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 234 136 0 0 chr1 2502375 2502419 -240161934 + (CATA)n Simple_repeat Simple_repeat 3 46 0 276 203 0 0 chr1 2502722 2502781 -240161572 + MER45 DNA AcHobo 1412 1470 -111 3453 213 44 7 chr1 2502829 2503584 -240160769 - MER45B DNA AcHobo -156 884 102 5179 106 3 4 chr1 2503584 2504361 -240159992 + L1PA13 LINE L1 5368 6143 -20 451 244 71 16 chr1 2504361 2504488 -240159865 - MER45B DNA AcHobo -903 137 4 279 104 0 0 chr1 2504680 2504728 -240159625 + (CA)n Simple_repeat Simple_repeat 1 48 0 356 276 26 9 chr1 2505249 2505365 -240158988 - MARNA DNA Mariner -158 428 311 389 299 52 61 chr1 2505418 2505649 -240158704 + MIR SINE MIR 31 259 -3 891 215 56 10 chr1 2505794 2505989 -240158364 + MER3 DNA MER1_type 1 204 -5 293 247 56 84 chr1 2505835 2506013 -240158340 - MER3 DNA MER1_type -5 204 32 * 377 287 73 15 chr1 2506061 2506197 -240158156 - MER103 DNA DNA -21 145 2 2126 101 7 3 chr1 2506310 2506618 -240157735 + AluY SINE Alu 1 309 -2 1313 232 150 30 chr1 2510675 2511115 -240153238 - MLT1D LTR MaLR 0 505 13 375 367 6 6 chr1 2511886 2512063 -240152290 + (TG)n Simple_repeat Simple_repeat 1 177 0 802 105 47 0 chr1 2513209 2513381 -240150972 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 965 26 52 26 chr1 2513409 2513756 -240150597 + (TAGA)n Simple_repeat Simple_repeat 1 356 0 430 263 20 0 chr1 2513885 2513984 -240150369 - L2 LINE L2 -1 3312 3212 2435 60 0 3 chr1 2514233 2514534 -240149819 + AluY SINE Alu 1 300 -11 699 225 0 0 chr1 2514631 2514800 -240149553 + (TG)n Simple_repeat Simple_repeat 1 169 0 419 297 26 0 chr1 2514830 2514985 -240149368 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 363 339 78 17 chr1 2516042 2516222 -240148131 + MIR SINE MIR 5 195 -67 2283 188 94 4 chr1 2517513 2518025 -240146328 + MER74A LTR ERVL 1 558 0 363 307 117 7 chr1 2518803 2518940 -240145413 + MLT1I LTR MaLR 67 218 -191 849 221 10 28 chr1 2518997 2519307 -240145046 + MLT1A1 LTR MaLR 1 365 0 323 241 69 0 chr1 2519348 2519435 -240144918 + MLT1I LTR MaLR 315 407 -2 24 0 0 0 chr1 2519775 2519799 -240144554 + AT_rich Low_complexity Low_complexity 1 24 0 2006 197 50 10 chr1 2521781 2521944 -240142409 + MSTB LTR MaLR 15 170 -256 1702 146 3 52 chr1 2521944 2522253 -240142100 + AluJb SINE Alu 1 294 -18 2006 197 50 10 chr1 2522253 2522485 -240141868 + MSTB LTR MaLR 170 426 0 526 250 60 24 chr1 2522928 2523096 -240141257 + MER5B DNA MER1_type 2 175 -3 403 247 103 7 chr1 2523107 2523253 -240141100 + MER5A DNA MER1_type 1 160 -29 321 312 263 0 chr1 2524580 2524785 -240139568 - MIR SINE MIR -1 261 3 282 179 0 0 chr1 2525622 2525678 -240138675 + GA-rich Low_complexity Low_complexity 1 56 0 195 222 0 0 chr1 2526207 2526243 -240138110 + L3b LINE CR1 1531 1566 -17 213 244 0 0 chr1 2526539 2526584 -240137769 + L2 LINE L2 3267 3311 -2 2251 211 33 21 chr1 2526617 2527128 -240137225 + MLT1E2 LTR MaLR 1 517 -109 241 254 18 0 chr1 2527170 2527225 -240137128 + LTR16B LTR ERVL 409 464 0 198 286 163 32 chr1 2528064 2528316 -240136037 + L2 LINE L2 2472 2756 -558 222 288 178 0 chr1 2528442 2528560 -240135793 + L2 LINE L2 3175 3313 0 2186 163 66 12 chr1 2529066 2529476 -240134877 - MSTB1 LTR MaLR 0 432 1 505 309 98 5 chr1 2530093 2530287 -240134066 + MIR SINE MIR 47 258 -4 441 0 0 0 chr1 2530524 2530573 -240133780 + (CA)n Simple_repeat Simple_repeat 2 50 0 248 313 143 7 chr1 2530631 2530778 -240133575 + MER5B DNA MER1_type 6 172 -6 548 278 9 52 chr1 2531129 2531359 -240132994 + L1MC5 LINE L1 7642 7861 -100 1351 153 63 4 chr1 2531417 2531672 -240132681 + L1MA7 LINE L1 6021 6290 -1 404 212 12 0 chr1 2532134 2532219 -240132134 - MLT1B LTR MaLR 0 390 305 2287 146 54 10 chr1 2532224 2532629 -240131724 + MER83 LTR ERV1 1 423 -25 225 175 0 0 chr1 2532677 2532712 -240131641 - MLT1B LTR MaLR -88 302 267 2698 113 3 3 chr1 2532712 2533076 -240131277 - THE1B LTR MaLR 0 364 1 10656 102 25 40 chr1 2533076 2534681 -240129672 - THE1B-int LTR MaLR 0 1580 1 2828 93 0 3 chr1 2534681 2535046 -240129307 - THE1B LTR MaLR 0 364 1 1367 186 15 8 chr1 2535046 2535310 -240129043 - MLT1B LTR MaLR -118 272 7 2156 132 0 3 chr1 2535750 2536061 -240128292 - AluSg SINE Alu 0 310 1 276 261 8 75 chr1 2537056 2537190 -240127163 - MIR SINE MIR -74 134 10 2312 113 0 0 chr1 2537268 2537568 -240126785 + AluSg SINE Alu 2 301 -9 359 296 47 69 chr1 2538294 2538527 -240125826 + MLT1L LTR MaLR 355 582 -33 192 248 124 29 chr1 2538874 2538979 -240125374 - MIR SINE MIR -119 143 29 437 257 90 66 chr1 2539358 2539693 -240124660 + L1ME4a LINE L1 5778 6120 -1 213 207 138 35 chr1 2541277 2541364 -240122989 - L2 LINE L2 0 3272 3177 251 308 47 47 chr1 2541626 2541798 -240122555 + MIR3 SINE MIR 22 193 -15 463 312 183 10 chr1 2542260 2542757 -240121596 - L2 LINE L2 -372 2942 2360 2861 119 24 5 chr1 2542763 2543183 -240121170 + MSTA LTR MaLR 1 428 0 8571 155 65 37 chr1 2543183 2544789 -240119564 + MSTA-int LTR MaLR 1 1651 0 2482 163 24 5 chr1 2544791 2545209 -240119144 + MSTA LTR MaLR 3 428 0 340 323 19 19 chr1 2545237 2545395 -240118958 - MER97b DNA MER1_type? -895 158 1 2437 274 152 20 chr1 2545415 2546768 -240117585 - L2 LINE L2 -1010 2304 773 1220 281 85 47 chr1 2546770 2547265 -240117088 - MLT1G1 LTR MaLR -1 594 81 4188 101 3 0 chr1 2547603 2548177 -240116176 - LTR24B LTR ERV1 0 576 1 201 227 171 0 chr1 2548334 2548422 -240115931 - L2 LINE L2 -1957 1357 1255 324 182 0 15 chr1 2548425 2548491 -240115862 - MLT1F1-int LTR MaLR -1302 69 5 578 260 143 11 chr1 2548503 2548903 -240115450 - MLT1F1 LTR MaLR -8 559 75 1206 255 195 21 chr1 2548957 2549619 -240114734 - L2 LINE L2 -2537 777 1 408 263 99 29 chr1 2550258 2550429 -240113924 + MIR SINE MIR 32 214 -48 1653 196 26 53 chr1 2550437 2550814 -240113539 + MLT1A2 LTR MaLR 1 367 -7 314 224 61 41 chr1 2551208 2551306 -240113047 - L2 LINE L2 -3 3310 3211 200 162 0 0 chr1 2551481 2551518 -240112835 - L2 LINE L2 -336 2977 2941 4213 123 41 8 chr1 2551835 2552355 -240111998 + L1MA6 LINE L1 5614 6162 -138 2276 177 16 61 chr1 2552355 2552592 -240111761 - MER66B LTR ERV1 0 486 283 1987 153 3 3 chr1 2552592 2552893 -240111460 - AluJb SINE Alu -3 309 9 2276 177 16 61 chr1 2552893 2553164 -240111189 - MER66B LTR ERV1 -203 283 1 4213 123 41 8 chr1 2553164 2553308 -240111045 + L1MA6 LINE L1 6162 6300 0 25 0 0 0 chr1 2553335 2553360 -240110993 + AT_rich Low_complexity Low_complexity 1 25 0 7928 191 12 4 chr1 2553675 2555275 -240109078 - L1 LINE L1 -2299 3847 2235 6954 132 21 5 chr1 2555258 2557088 -240107265 + L1MA5 LINE L1 4436 6300 0 * 5864 189 27 21 chr1 2557161 2558162 -240106191 + L1MB3 LINE L1 3 997 -5422 2404 54 40 78 chr1 2558162 2558535 -240105818 + L1PA6 LINE L1 5796 6154 0 5864 189 27 21 chr1 2558535 2561100 -240103253 + L1MB3 LINE L1 997 3545 -2874 16463 141 23 16 chr1 2561100 2563800 -240100553 + Tigger2 DNA MER2_type 1 2718 0 5864 189 27 21 chr1 2563800 2565244 -240099109 + L1MB3 LINE L1 3545 6201 -218 279 288 23 13 chr1 2565386 2565516 -240098837 + MIR SINE MIR 37 165 -76 224 288 12 6 chr1 2565941 2566060 -240098293 - MIR SINE MIR -33 229 110 1115 156 0 0 chr1 2567404 2567584 -240096769 + L1MA1 LINE L1 6123 6302 0 2219 122 22 35 chr1 2567675 2568044 -240096309 - THE1B LTR MaLR 0 364 1 812 211 70 6 chr1 2568495 2568666 -240095687 - MLT1D LTR MaLR 0 505 324 938 206 58 84 chr1 2568852 2569119 -240095234 - MLT1D LTR MaLR -169 336 78 2795 183 14 19 chr1 2569119 2569634 -240094719 - MLT2B2 LTR ERVL -3 512 1 938 206 58 84 chr1 2569634 2569711 -240094642 - MLT1D LTR MaLR -427 78 1 247 308 56 28 chr1 2570980 2571087 -240093266 - L2 LINE L2 -8 3305 3196 314 250 143 57 chr1 2571371 2571551 -240092802 - MIR SINE MIR -31 231 42 1403 277 133 63 chr1 2571552 2571728 -240092625 + L1ME2 LINE L1 37 199 -6197 2547 57 6 25 chr1 2571728 2572045 -240092308 - AluY SINE Alu 0 311 1 1403 277 133 63 chr1 2572045 2573382 -240090971 + L1ME2 LINE L1 199 1656 -4740 443 301 43 11 chr1 2573398 2573584 -240090769 + L1ME2 LINE L1 1754 1945 -4451 * 576 223 27 0 chr1 2573579 2573727 -240090626 + L1ME2 LINE L1 4344 4495 -1720 1965 256 28 50 chr1 2573749 2574394 -240089959 - L1ME1 LINE L1 -5 6161 5531 1710 215 78 82 chr1 2574396 2575161 -240089192 + L1ME2 LINE L1 5272 6030 -201 2080 211 37 8 chr1 2575183 2575639 -240088714 + MER54A LTR ERVL 25 697 -204 2425 145 57 5 chr1 2575639 2575841 -240088512 - MSTA LTR MaLR 0 428 238 243 0 0 0 chr1 2575841 2575868 -240088485 + (TGG)n Simple_repeat Simple_repeat 1 27 0 2425 145 57 5 chr1 2575868 2576072 -240088281 - MSTA LTR MaLR -190 238 1 6774 174 31 8 chr1 2576072 2577254 -240087099 - MSTA-int LTR MaLR 0 1651 443 809 105 0 0 chr1 2577254 2577368 -240086985 + AluSg/x SINE Alu 196 309 0 476 201 49 36 chr1 2577368 2577522 -240086831 + L1ME2 LINE L1 6075 6232 -3 244 232 11 53 chr1 2578864 2578959 -240085394 - MIR SINE MIR -132 130 40 406 330 35 20 chr1 2579930 2580133 -240084220 - MIR SINE MIR -37 225 20 486 322 28 6 chr1 2580207 2580384 -240083969 - MIR SINE MIR -59 203 23 309 263 127 36 chr1 2580481 2580687 -240083666 + MIR SINE MIR 21 258 -4 25 31 0 0 chr1 2581579 2581611 -240082742 + AT_rich Low_complexity Low_complexity 1 32 0 2593 133 53 2 chr1 2581836 2582235 -240082118 + MSTA LTR MaLR 10 428 0 493 247 105 39 chr1 2582269 2582572 -240081781 - L1ME LINE L1 -360 5802 5483 397 287 12 37 chr1 2582986 2583150 -240081203 - L1P5 LINE L1 -698 5456 5297 1280 271 119 53 chr1 2583548 2584675 -240079678 - L1ME LINE L1 -1609 4537 3337 343 291 35 57 chr1 2584757 2584898 -240079455 + L1ME4a LINE L1 5984 6121 0 869 244 153 49 chr1 2585537 2586263 -240078090 + LTR1 LTR ERV1 28 826 0 2480 113 108 5 chr1 2586478 2586866 -240077487 + MSTA LTR MaLR 1 428 0 587 316 112 47 chr1 2587102 2587252 -240077101 + L2 LINE L2 2300 2439 -874 2169 110 7 0 chr1 2587252 2587562 -240076791 - AluSx SINE Alu 0 312 1 587 316 112 47 chr1 2587562 2587580 -240076773 + L2 LINE L2 2439 2454 -859 3580 201 21 61 chr1 2587580 2588590 -240075763 - LTR5 LTR ERVK 0 969 1 587 316 112 47 chr1 2588590 2589373 -240074980 + L2 LINE L2 2454 3311 -2 434 218 224 36 chr1 2590480 2590647 -240073706 + MIR SINE MIR 4 195 -63 3039 160 4 8 chr1 2591496 2591991 -240072362 - THE1-int LTR MaLR -197 1383 891 318 143 0 0 chr1 2592052 2592115 -240072238 + (TG)n Simple_repeat Simple_repeat 2 64 0 448 186 4 18 chr1 2592122 2592343 -240072010 + CT-rich Low_complexity Low_complexity 1 218 0 272 238 0 10 chr1 2592362 2592463 -240071890 + CT-rich Low_complexity Low_complexity 1 100 0 1050 123 0 37 chr1 2592832 2592977 -240071376 - THE1C LTR MaLR 0 375 237 1998 82 59 0 chr1 2592977 2593247 -240071106 - THE1A LTR MaLR 0 355 70 530 48 0 0 chr1 2593505 2593568 -240070785 - THE1A LTR MaLR -292 63 1 1402 110 33 49 chr1 2593568 2593813 -240070540 - THE1C LTR MaLR -134 241 1 703 278 47 0 chr1 2593846 2594015 -240070338 + MIR SINE MIR 33 209 -53 450 287 169 30 chr1 2594306 2594672 -240069681 - HERVL LTR ERVL -3514 2140 1724 297 219 0 0 chr1 2595072 2595145 -240069208 + (TG)n Simple_repeat Simple_repeat 1 73 0 955 266 48 50 chr1 2595394 2595811 -240068542 + MLT1C LTR MaLR 52 467 0 259 363 9 9 chr1 2596219 2596332 -240068021 - HERVL LTR ERVL -5142 622 510 207 0 0 0 chr1 2596375 2596398 -240067955 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1732 134 57 132 chr1 2596580 2597004 -240067349 + MSTD LTR MaLR 1 392 -4 389 238 67 19 chr1 2597290 2597395 -240066958 + MLT1J LTR MaLR 109 218 -293 2242 93 3 10 chr1 2597774 2598085 -240066268 + AluSc SINE Alu 1 309 0 2216 127 116 10 chr1 2598406 2598793 -240065560 - MSTA LTR MaLR 0 428 1 1942 119 10 0 chr1 2598828 2599122 -240065231 - AluSx SINE Alu -15 297 1 243 258 67 22 chr1 2599798 2599887 -240064466 - L2 LINE L2 0 3272 3180 * 343 351 189 7 chr1 2599867 2600312 -240064041 - L2 LINE L2 -400 2914 2389 346 293 202 16 chr1 2600588 2600841 -240063512 - L2 LINE L2 -880 2434 2135 1369 173 50 92 chr1 2601011 2601392 -240062961 + MLT1A1 LTR MaLR 1 365 0 11961 173 42 22 chr1 2602529 2605139 -240059214 + L1 LINE L1 2353 5014 -1132 2192 110 3 3 chr1 2605385 2605693 -240058660 - AluSx SINE Alu -4 308 1 437 303 26 41 chr1 2605740 2605935 -240058418 + MIR SINE MIR 13 204 -58 402 115 0 0 chr1 2605967 2606028 -240058325 + (CA)n Simple_repeat Simple_repeat 2 62 0 2063 180 43 53 chr1 2606071 2606452 -240057901 + MLT1D LTR MaLR 21 397 -108 2195 112 7 0 chr1 2606452 2606757 -240057596 - AluSq SINE Alu -6 307 1 2063 180 43 53 chr1 2606757 2606865 -240057488 + MLT1D LTR MaLR 397 505 0 359 283 142 19 chr1 2608646 2608851 -240055502 - MIR SINE MIR -12 250 21 325 247 26 0 chr1 2609112 2609189 -240055164 + MLT1D LTR MaLR 40 118 -387 1384 128 0 68 chr1 2609189 2609424 -240054929 + AluJb SINE Alu 85 303 -9 1122 237 120 28 chr1 2609424 2609782 -240054571 + MLT1D LTR MaLR 107 497 -8 2150 91 3 13 chr1 2610142 2610450 -240053903 + AluY SINE Alu 1 305 -6 1045 239 90 35 chr1 2610971 2611339 -240053014 - MLT1B LTR MaLR -2 388 1 779 258 104 69 chr1 2612669 2613189 -240051164 - MER115 DNA AcHobo -1 692 107 2496 30 0 3 chr1 2613906 2614202 -240050151 - AluY SINE Alu -11 300 6 234 91 0 0 chr1 2614940 2614973 -240049380 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 275 343 0 12 chr1 2615745 2615917 -240048436 + (GGGTG)n Simple_repeat Simple_repeat 3 172 0 265 148 0 49 chr1 2616356 2616417 -240047936 - L1MC5 LINE L1 -48 7913 7856 2290 105 55 22 chr1 2616569 2616932 -240047421 - THE1C LTR MaLR 0 375 1 357 258 0 11 chr1 2616949 2617038 -240047315 + MIR SINE MIR 37 124 -138 317 235 133 15 chr1 2617038 2617234 -240047119 - L1MC5 LINE L1 -740 7221 7003 328 298 119 18 chr1 2617282 2617450 -240046903 - L1MEd LINE L1 -4956 1163 979 688 93 0 58 chr1 2617450 2617711 -240046642 + (TC)n Simple_repeat Simple_repeat 1 245 0 189 135 10 67 chr1 2617714 2617818 -240046535 + CT-rich Low_complexity Low_complexity 1 98 0 795 92 0 49 chr1 2617819 2618004 -240046349 + (TC)n Simple_repeat Simple_repeat 1 176 0 356 330 77 43 chr1 2618043 2618370 -240045983 - L1MEd LINE L1 -4941 1178 841 592 89 0 40 chr1 2618370 2618494 -240045859 + (TC)n Simple_repeat Simple_repeat 1 119 0 654 289 87 40 chr1 2618536 2619003 -240045350 - L1MC4 LINE L1 -824 7069 6481 33 43 0 0 chr1 2619206 2619253 -240045100 + AT_rich Low_complexity Low_complexity 1 47 0 1988 113 3 0 chr1 2619441 2619760 -240044593 - AluSx SINE Alu 0 320 1 295 200 24 24 chr1 2619795 2619880 -240044473 - L1ME2 LINE L1 -1 6163 6079 2313 158 40 37 chr1 2619881 2620311 -240044042 - Tigger2a DNA MER2_type -1 433 3 2539 236 72 7 chr1 2620430 2621390 -240042963 - L1ME2 LINE L1 -104 6060 5036 989 218 9 24 chr1 2621390 2621601 -240042752 - MER3 DNA MER1_type 0 209 2 669 241 109 51 chr1 2621602 2621913 -240042440 - L1ME2 LINE L1 -1103 5043 4715 1641 260 36 4 chr1 2621913 2622466 -240041887 - L1ME2 LINE L1 -2513 3633 3063 2033 32 4 0 chr1 2622705 2622953 -240041400 + L1PA3 LINE L1 5904 6152 -3 244 200 200 0 chr1 2623029 2623089 -240041264 - L2 LINE L2 -1 3312 3241 476 293 58 22 chr1 2624447 2624671 -240039682 - MIR SINE MIR -16 246 15 307 123 62 0 chr1 2624674 2624755 -240039598 + CT-rich Low_complexity Low_complexity 4 89 0 236 219 0 14 chr1 2624861 2624934 -240039419 + CT-rich Low_complexity Low_complexity 4 75 0 513 190 114 51 chr1 2626794 2626952 -240037401 + MIR SINE MIR 81 248 -14 487 191 6 6 chr1 2627521 2627694 -240036659 + (TG)n Simple_repeat Simple_repeat 2 174 0 195 146 0 0 chr1 2627721 2627762 -240036591 + (TG)n Simple_repeat Simple_repeat 2 42 0 310 281 62 25 chr1 2628246 2628406 -240035947 + LTR41 LTR ERVL 1 166 -607 307 234 31 26 chr1 2629606 2629723 -240034630 + LTR41 LTR ERVL 658 795 0 334 288 42 17 chr1 2629999 2630117 -240034236 - MIR3 SINE MIR -75 133 13 2355 99 8 8 chr1 2630196 2630550 -240033803 + THE1A LTR MaLR 2 355 0 2234 107 3 0 chr1 2630631 2630922 -240033431 + AluSp SINE Alu 1 292 -21 193 200 25 0 chr1 2631224 2631264 -240033089 + MER5A DNA MER1_type 15 55 -134 238 272 0 58 chr1 2631732 2631835 -240032518 + L1ME4a LINE L1 5975 6071 -50 1539 226 19 14 chr1 2632884 2633247 -240031106 + MLT1A1 LTR MaLR 1 365 0 230 230 126 46 chr1 2633311 2633398 -240030955 - L2 LINE L2 -4 3268 3175 5297 253 53 35 chr1 2634083 2634288 -240030065 - L1MEc LINE L1 -4158 2238 2038 2279 148 25 39 chr1 2634288 2634672 -240029681 + MSTA LTR MaLR 3 382 -46 2264 95 0 10 chr1 2634672 2634966 -240029387 - AluSc SINE Alu -18 291 1 2279 148 25 39 chr1 2634966 2635013 -240029340 + MSTA LTR MaLR 382 428 0 5297 253 53 35 chr1 2635013 2635514 -240028839 - L1MEc LINE L1 -4358 2038 1548 2113 146 7 0 chr1 2635514 2635823 -240028530 - AluJb SINE Alu -1 311 1 5297 253 53 35 chr1 2635823 2635860 -240028493 - L1MEc LINE L1 -4848 1548 1513 2261 119 0 3 chr1 2635860 2636171 -240028182 - AluSx SINE Alu -2 310 1 5297 253 53 35 chr1 2636171 2637394 -240026959 - L1MEc LINE L1 -4883 1513 234 608 271 133 28 chr1 2638341 2638559 -240025794 - MIR SINE MIR -6 256 16 420 221 43 80 chr1 2638747 2638910 -240025443 - L2 LINE L2 -1 3312 3156 204 40 0 0 chr1 2639851 2639876 -240024477 + (TAGG)n Simple_repeat Simple_repeat 2 26 0 978 158 7 7 chr1 2639923 2640498 -240023855 + (TGGA)n Simple_repeat Simple_repeat 1 575 0 439 279 99 12 chr1 2640585 2640746 -240023607 + MER96 DNA MER1_type? 1 175 0 358 280 0 28 chr1 2640930 2641037 -240023316 + MIR3 SINE MIR 53 156 -52 207 286 81 103 chr1 2641227 2641461 -240022892 - L2 LINE L2 -76 3196 2968 2503 200 44 49 chr1 2642383 2642998 -240021355 - MLT1E1 LTR MaLR 0 654 43 491 289 86 5 chr1 2643143 2643340 -240021013 + MIR SINE MIR 40 252 -10 300 153 17 0 chr1 2643665 2643724 -240020629 + L1ME4a LINE L1 6062 6121 0 350 225 22 0 chr1 2645591 2645680 -240018673 + MER5A DNA MER1_type 16 106 -83 218 244 114 41 chr1 2645894 2646017 -240018336 + L2 LINE L2 3141 3272 0 386 293 60 0 chr1 2647398 2647531 -240016822 + MLT1I LTR MaLR 8 148 -261 284 226 0 0 chr1 2647518 2647580 -240016773 + MLT1I LTR MaLR 87 148 -261 * 349 251 55 86 chr1 2647567 2647730 -240016623 + MLT1I LTR MaLR 87 244 -165 234 293 13 0 chr1 2647775 2647850 -240016503 + MLT1I LTR MaLR 334 409 0 288 0 0 0 chr1 2649583 2649615 -240014738 + (TG)n Simple_repeat Simple_repeat 1 32 0 204 40 0 0 chr1 2649614 2649639 -240014714 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 195 268 0 0 chr1 2649936 2650033 -240014320 + (TG)n Simple_repeat Simple_repeat 1 97 0 220 300 98 19 chr1 2650112 2650290 -240014063 + MIR SINE MIR 19 218 -44 674 234 188 15 chr1 2651707 2652054 -240012299 + MLT1B LTR MaLR 1 384 -6 1912 85 32 3 chr1 2652414 2652696 -240011657 + L1PB1 LINE L1 5861 6150 -1 638 213 101 43 chr1 2652842 2653049 -240011304 - MER20 DNA MER1_type 0 219 1 256 264 0 0 chr1 2653881 2653934 -240010419 + L2 LINE L2 3256 3308 -5 198 236 0 0 chr1 2654525 2654580 -240009773 + (CA)n Simple_repeat Simple_repeat 1 55 0 8642 168 77 88 chr1 2655268 2655674 -240008679 + L1MC3 LINE L1 5416 5825 -1960 1836 156 7 14 chr1 2655674 2655962 -240008391 + AluJb SINE Alu 13 298 -14 2325 121 0 0 chr1 2655964 2656270 -240008083 + AluSg SINE Alu 1 306 -4 1460 151 9 22 chr1 2656278 2656510 -240007843 + AluJo SINE Alu 63 291 -21 8642 168 77 88 chr1 2656510 2657193 -240007160 + L1MC3 LINE L1 5833 6522 -1263 577 25 25 0 chr1 2657193 2657272 -240007081 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 8642 168 77 88 chr1 2657272 2657725 -240006628 + L1MC3 LINE L1 6522 6978 -807 341 97 0 81 chr1 2657725 2657787 -240006566 + Alu SINE Alu 242 298 -4 8642 168 77 88 chr1 2657787 2658558 -240005795 + L1MC3 LINE L1 6978 7778 -7 717 246 80 34 chr1 2658631 2658990 -240005363 + MLT1A1 LTR MaLR 1 323 -42 1375 93 0 0 chr1 2659000 2659172 -240005181 - AluSp SINE Alu -10 303 132 1028 74 0 0 chr1 2659322 2659443 -240004910 - AluSp SINE Alu -192 121 1 200 355 84 0 chr1 2659992 2660099 -240004254 - MIR SINE MIR -55 207 92 242 192 0 19 chr1 2660717 2660769 -240003584 - MLT1E3 LTR MaLR -295 329 279 1551 258 28 17 chr1 2660840 2660928 -240003425 + L1M4 LINE L1 3850 3936 -2210 1021 196 25 53 chr1 2660928 2661173 -240003180 + MER8 DNA MER2_type 1 238 -1 1551 258 28 17 chr1 2661173 2661613 -240002740 + L1M4 LINE L1 3936 4387 -1759 2110 127 3 3 chr1 2661613 2661912 -240002441 + AluSq SINE Alu 1 299 -14 748 138 58 0 chr1 2661916 2662054 -240002299 - L1MA9 LINE L1 -97 6215 6070 * 584 171 0 0 chr1 2662032 2662137 -240002216 + L1MA9 LINE L1 6203 6307 -5 * 835 231 34 15 chr1 2662142 2662406 -240001947 + L1M4 LINE L1 4374 4642 -1504 1118 171 0 0 chr1 2662407 2662583 -240001770 + AluSg/x SINE Alu 130 305 -7 2173 126 17 0 chr1 2662641 2662942 -240001411 + AluSq SINE Alu 1 306 -7 921 140 11 11 chr1 2662952 2663131 -240001222 + GA-rich Low_complexity Low_complexity 1 179 0 369 0 0 0 chr1 2663131 2663172 -240001181 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 1530 259 42 18 chr1 2663172 2663721 -240000632 + L1M4 LINE L1 4694 5255 -891 1888 140 50 13 chr1 2663947 2663980 -240000373 - L1MB3 LINE L1 0 6183 6153 2501 81 3 0 chr1 2663980 2664287 -240000066 - AluSp SINE Alu -5 308 1 1888 140 50 13 chr1 2664287 2664631 -239999722 - L1MB3 LINE L1 -30 6153 5792 2162 125 3 10 chr1 2664873 2665186 -239999167 + AluSx SINE Alu 1 311 -1 2566 84 0 0 chr1 2665220 2665531 -239998822 + AluY SINE Alu 1 311 0 435 231 35 42 chr1 2666241 2666384 -239997969 + MER5A DNA MER1_type 20 161 -28 750 208 138 103 chr1 2667776 2668088 -239996265 + MLT1J LTR MaLR 8 330 -181 1680 220 111 5 chr1 2668594 2669016 -239995337 + MLT1C LTR MaLR 1 467 0 262 359 0 0 chr1 2669109 2669212 -239995141 + (TGGA)n Simple_repeat Simple_repeat 3 105 0 483 331 68 51 chr1 2671443 2671857 -239992496 + MLT1K LTR MaLR 168 588 0 195 129 0 0 chr1 2671908 2671939 -239992414 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 * 664 111 47 23 chr1 2671936 2672107 -239992246 + GA-rich Low_complexity Low_complexity 2 176 0 221 274 17 17 chr1 2672630 2672712 -239991641 - MIR SINE MIR -122 86 5 216 284 74 0 chr1 2673716 2673797 -239990556 - MIR3 SINE MIR -8 200 114 214 313 60 0 chr1 2674223 2674306 -239990047 + L2 LINE L2 3157 3244 -28 187 256 100 22 chr1 2675946 2676036 -239988317 + MIR3 SINE MIR 64 160 -48 5631 91 17 18 chr1 2676136 2677001 -239987352 + L1PA11 LINE L1 5310 6170 -4 446 311 111 5 chr1 2677025 2677215 -239987138 - MIR SINE MIR -50 212 3 1690 201 117 47 chr1 2677235 2677687 -239986666 - MLT1D LTR MaLR 0 505 22 233 283 88 9 chr1 2677752 2677865 -239986488 - MIR SINE MIR -113 149 28 1698 201 162 16 chr1 2678090 2678577 -239985776 - MER74A LTR ERVL 0 558 1 701 246 29 6 chr1 2678608 2678783 -239985570 - MER91A DNA MER1_type 0 196 18 2140 108 0 0 chr1 2679952 2680229 -239984124 + AluSg SINE Alu 18 294 -16 236 256 67 22 chr1 2681423 2681513 -239982840 - MIR SINE MIR -81 181 88 205 31 0 0 chr1 2682018 2682050 -239982303 + L2 LINE L2 3028 3059 -213 879 310 103 13 chr1 2683411 2683798 -239980555 + MLT1K LTR MaLR 39 460 -128 701 171 0 23 chr1 2683835 2683964 -239980389 - FLAM_C SINE Alu -16 127 2 321 26 0 0 chr1 2683971 2684009 -239980344 + (TA)n Simple_repeat Simple_repeat 2 39 0 387 123 0 0 chr1 2684009 2684066 -239980287 - FAM SINE Alu -7 172 116 1101 99 0 14 chr1 2684071 2684212 -239980141 - AluSq/x SINE Alu -173 139 1 311 238 12 12 chr1 2684434 2684518 -239979835 - MER96 DNA MER1_type? -91 84 1 2507 143 11 19 chr1 2684603 2685073 -239979280 - L1MA8 LINE L1 -12 6279 5814 334 228 0 25 chr1 2685074 2685153 -239979200 - AluSp/q SINE Alu -1 302 226 475 69 14 0 chr1 2685158 2685230 -239979123 + MLT2A2 LTR ERVL 1 73 -380 * 2152 131 38 0 chr1 2685217 2685561 -239978792 + THE1B LTR MaLR 6 362 -2 1228 147 0 6 chr1 2685561 2685738 -239978615 - AluJb SINE Alu -96 216 41 1247 152 13 5 chr1 2685738 2685962 -239978391 - L1MA8 LINE L1 -479 5821 5596 240 336 59 8 chr1 2685972 2686091 -239978262 + MIR3 SINE MIR 77 201 -7 230 211 56 44 chr1 2686360 2686450 -239977903 - L1P LINE L1 -5450 696 606 217 104 62 21 chr1 2688600 2688648 -239975705 + A-rich Low_complexity Low_complexity 3 52 0 202 277 46 0 chr1 2688906 2688971 -239975382 + MIR SINE MIR 98 165 -97 259 282 15 0 chr1 2689825 2689905 -239974448 - MIR SINE MIR -92 116 36 2093 195 24 9 chr1 2690167 2690624 -239973729 + MLT1C LTR MaLR 4 467 0 352 267 62 23 chr1 2691049 2691225 -239973128 + MLT1I LTR MaLR 224 406 -3 550 285 57 0 chr1 2691810 2692003 -239972350 + MIR SINE MIR 8 211 -51 351 329 51 0 chr1 2692011 2692148 -239972205 - MIR SINE MIR -104 158 15 2082 154 12 51 chr1 2692869 2693279 -239971074 - MSTD LTR MaLR -2 394 1 670 172 0 14 chr1 2693550 2693695 -239970658 + CT-rich Low_complexity Low_complexity 2 144 0 2302 246 73 14 chr1 2694162 2694868 -239969485 - L1MEc LINE L1 -3152 3063 2330 225 0 0 0 chr1 2694868 2694893 -239969460 + (CA)n Simple_repeat Simple_repeat 2 26 0 2302 246 73 14 chr1 2694893 2695224 -239969129 - L1MEc LINE L1 -3885 2330 2020 666 90 0 10 chr1 2695225 2695325 -239969028 + L1PA5 LINE L1 6048 6146 -8 840 240 49 12 chr1 2695359 2695590 -239968763 - L1ME LINE L1 -649 5517 5275 2160 136 0 0 chr1 2695590 2695885 -239968468 + AluSx SINE Alu 1 295 -17 840 240 49 12 chr1 2695885 2695899 -239968454 - L1ME LINE L1 -891 5275 5263 2165 239 42 41 chr1 2695912 2696811 -239967542 - L1ME LINE L1 -2775 3371 2472 3276 194 34 26 chr1 2698109 2698379 -239965974 - L1MB7 LINE L1 -10 6174 5908 2079 210 15 23 chr1 2698379 2698850 -239965503 + MLT1C LTR MaLR 1 467 0 3276 194 34 26 chr1 2698850 2699306 -239965047 - L1MB7 LINE L1 -276 5908 5442 2282 129 0 0 chr1 2700018 2700329 -239964024 + AluSx SINE Alu 1 311 -1 294 356 36 12 chr1 2704240 2704565 -239959788 - L2 LINE L2 -231 3082 2752 1293 238 80 28 chr1 2704567 2704967 -239959386 - MLT1C LTR MaLR -2 465 45 * 2780 145 11 11 chr1 2704963 2705439 -239958914 - MER31A LTR ERV1 -8 477 2 675 261 97 13 chr1 2705479 2705717 -239958636 - L2 LINE L2 -556 2758 2501 2026 96 0 0 chr1 2706965 2707214 -239957139 + AluSx SINE Alu 1 249 -63 374 326 116 6 chr1 2707842 2708014 -239956339 - L1ME4a LINE L1 -236 5885 5695 186 43 0 0 chr1 2708313 2708336 -239956017 + (TG)n Simple_repeat Simple_repeat 2 24 0 246 261 0 0 chr1 2709511 2709576 -239954777 + L1ME1 LINE L1 37 101 -6295 613 152 53 94 chr1 2709583 2709754 -239954599 - MLT2B1 LTR ERVL -2 518 355 1342 263 79 22 chr1 2709771 2710265 -239954088 + L1ME1 LINE L1 121 642 -5754 811 218 45 30 chr1 2710270 2710536 -239953817 + L1ME1 LINE L1 3118 3387 -2828 241 263 0 0 chr1 2710534 2710591 -239953762 + L1ME1 LINE L1 4342 4398 -1817 * 3198 223 33 61 chr1 2710600 2710886 -239953467 + L1ME1 LINE L1 4372 4664 -1571 2279 112 0 10 chr1 2710886 2711189 -239953164 + AluSx SINE Alu 1 300 -12 3198 223 33 61 chr1 2711189 2712728 -239951625 + L1ME1 LINE L1 4664 6138 -97 1864 158 25 51 chr1 2712728 2713121 -239951232 - MLT1B LTR MaLR 0 390 8 295 183 0 0 chr1 2713122 2713182 -239951171 + L1MA10 LINE L1 6268 6327 -7 519 306 16 0 chr1 2714028 2714149 -239950204 + L2 LINE L2 3191 3313 0 228 333 152 24 chr1 2715588 2715753 -239948600 - L3 LINE CR1 -57 1520 1335 197 397 44 7 chr1 2715858 2715994 -239948359 - L3 LINE CR1 -437 1140 1000 4330 86 26 0 chr1 2716072 2716657 -239947696 - L1PA10 LINE L1 -11 6157 5558 2229 98 0 19 chr1 2716657 2717225 -239947128 + L1PA10 LINE L1 5019 5573 -595 22 0 0 0 chr1 2718624 2718646 -239945707 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr1 2718716 2718772 -239945581 + AT_rich Low_complexity Low_complexity 1 56 0 404 297 36 18 chr1 2718832 2719051 -239945302 - L1MD2 LINE L1 -5 6354 6132 231 173 0 0 chr1 2719075 2719127 -239945226 + (TG)n Simple_repeat Simple_repeat 1 52 0 306 269 0 0 chr1 2719159 2719315 -239945038 + (TG)n Simple_repeat Simple_repeat 1 156 0 264 275 0 0 chr1 2719343 2719503 -239944850 + (TG)n Simple_repeat Simple_repeat 1 160 0 354 269 0 0 chr1 2719538 2719759 -239944594 + (TG)n Simple_repeat Simple_repeat 1 221 0 246 253 0 0 chr1 2719777 2719876 -239944477 + (TG)n Simple_repeat Simple_repeat 2 100 0 307 263 34 34 chr1 2719951 2720069 -239944284 - L1MD2 LINE L1 -196 6163 6046 220 269 93 46 chr1 2721442 2721550 -239942803 + L2 LINE L2 3200 3312 -1 238 388 10 0 chr1 2722330 2722428 -239941925 + MIR SINE MIR 164 262 0 1653 214 30 42 chr1 2722605 2722932 -239941421 + MLT1C LTR MaLR 1 322 -145 3439 150 2 11 chr1 2722932 2723464 -239940889 - MER1A DNA MER1_type 0 527 1 1653 214 30 42 chr1 2723464 2723609 -239940744 + MLT1C LTR MaLR 322 467 0 188 235 0 0 chr1 2723660 2723694 -239940659 - L2 LINE L2 -74 3198 3165 443 261 0 0 chr1 2725114 2725182 -239939171 - L2 LINE L2 -24 3289 3219 2039 124 31 7 chr1 2725182 2725473 -239938880 + AluSx SINE Alu 1 298 -14 443 261 0 0 chr1 2725473 2725496 -239938857 - L2 LINE L2 -93 3220 3198 2084 129 99 40 chr1 2726003 2726047 -239938306 - MSTA LTR MaLR 0 428 388 2089 108 47 0 chr1 2726047 2726343 -239938010 + AluSx SINE Alu 1 310 -2 2084 129 99 40 chr1 2726343 2726702 -239937651 - MSTA LTR MaLR -40 388 1 376 329 17 43 chr1 2726702 2726933 -239937420 - L1MD2 LINE L1 -2049 5759 5535 6879 61 10 7 chr1 2726991 2728329 -239936024 + L1PA7 LINE L1 4813 6153 -1 207 133 0 0 chr1 2728442 2728472 -239935881 - L2 LINE L2 -13 3259 3230 487 160 191 0 chr1 2728532 2728663 -239935690 + Charlie5 DNA MER1_type 2359 2514 -98 23 54 0 0 chr1 2728674 2728711 -239935642 + AT_rich Low_complexity Low_complexity 1 37 0 1061 86 7 13 chr1 2728729 2728881 -239935472 + L1PA8 LINE L1 6019 6169 -3 448 257 155 16 chr1 2729723 2729921 -239934432 + L1MC3 LINE L1 6096 7775 -10 2504 117 16 19 chr1 2730965 2731341 -239933012 + THE1C LTR MaLR 1 375 0 207 313 12 0 chr1 2732156 2732239 -239932114 - L2 LINE L2 -28 3285 3202 184 279 73 15 chr1 2732647 2732715 -239931638 - L2 LINE L2 -335 2978 2907 1687 225 67 23 chr1 2732753 2733272 -239931081 + MER77 LTR ERV1 54 595 -10 183 314 0 43 chr1 2733368 2733438 -239930915 - L2 LINE L2 -954 2360 2294 927 230 15 0 chr1 2733863 2734067 -239930286 - MER58A DNA MER1_type -17 207 1 367 341 47 12 chr1 2734295 2734465 -239929888 - L3 LINE CR1 -693 884 709 487 318 59 25 chr1 2734478 2734714 -239929639 + MIR SINE MIR 4 247 -15 277 289 0 31 chr1 2734750 2734847 -239929506 - L3 LINE CR1 -901 676 583 189 314 48 19 chr1 2735152 2735257 -239929096 - MIR SINE MIR -23 239 132 354 299 10 0 chr1 2735258 2735355 -239928998 + MIR SINE MIR 118 215 -47 227 314 102 58 chr1 2736454 2736591 -239927762 + MIR SINE MIR 29 171 -91 498 315 118 5 chr1 2737307 2737510 -239926843 - MIR SINE MIR -5 257 32 251 316 171 0 chr1 2737658 2737810 -239926543 - MIR SINE MIR -20 242 65 407 63 16 0 chr1 2738512 2738575 -239925778 + (GA)n Simple_repeat Simple_repeat 1 64 0 234 91 0 0 chr1 2739343 2739376 -239924977 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6245 29 10 0 chr1 2739443 2740336 -239924017 + L1PA4 LINE L1 4813 6171 0 594 305 34 67 chr1 2740338 2740833 -239923520 + L1MC4a LINE L1 5425 5903 -1905 270 308 26 13 chr1 2742131 2742209 -239922144 - MIR SINE MIR -91 171 93 1656 254 32 22 chr1 2742211 2742716 -239921637 + LTR40a LTR ERVL 7 516 -3 196 212 35 129 chr1 2742719 2742804 -239921549 - MIR SINE MIR -108 100 24 290 236 11 101 chr1 2743184 2743273 -239921080 + L2 LINE L2 3209 3289 -24 306 129 0 0 chr1 2743524 2743586 -239920767 + (TGAG)n Simple_repeat Simple_repeat 2 63 0 199 283 44 44 chr1 2743742 2743855 -239920498 - MIR SINE MIR -77 131 19 5253 140 17 10 chr1 2744481 2745518 -239918835 - L1PA16 LINE L1 -16 6150 5100 26 0 0 0 chr1 2745544 2745570 -239918783 + AT_rich Low_complexity Low_complexity 1 26 0 3968 20 7 2 chr1 2745585 2746067 -239918286 - L1PA2 LINE L1 0 6155 5693 3109 31 3 0 chr1 2746067 2746448 -239917905 + L1PA2 LINE L1 5345 5726 -429 343 299 68 47 chr1 2748652 2748886 -239915467 + L1ME LINE L1 5353 5591 -530 780 248 39 60 chr1 2748886 2749217 -239915136 - MLT1I LTR MaLR -2 407 84 483 63 0 0 chr1 2749231 2749294 -239915059 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 213 121 0 0 chr1 2749300 2749333 -239915020 + (GA)n Simple_repeat Simple_repeat 2 34 0 300 82 20 20 chr1 2749333 2749382 -239914971 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 599 210 4 4 chr1 2749382 2749620 -239914733 + (TAGA)n Simple_repeat Simple_repeat 1 238 0 186 292 22 56 chr1 2749645 2749670 -239914683 + L2 LINE L2 3195 3219 -94 1497 135 154 34 chr1 2749670 2749936 -239914417 - AluSg SINE Alu -2 298 1 186 292 22 56 chr1 2749936 2749999 -239914354 + L2 LINE L2 3219 3280 -33 680 108 67 0 chr1 2750012 2750455 -239913898 + (TGGA)n Simple_repeat Simple_repeat 1 472 0 644 108 52 8 chr1 2750620 2750872 -239913481 + (TGGA)n Simple_repeat Simple_repeat 1 263 0 180 349 23 23 chr1 2750903 2750989 -239913364 + L2 LINE L2 3195 3280 -33 555 102 66 0 chr1 2751002 2751139 -239913214 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 245 169 17 0 chr1 2751396 2751455 -239912898 + CT-rich Low_complexity Low_complexity 1 60 0 283 304 47 58 chr1 2751612 2751783 -239912570 - L2 LINE L2 -159 3113 2945 509 254 199 50 chr1 2751809 2752171 -239912182 - MLT1J2 LTR MaLR 0 450 35 188 295 247 13 chr1 2752553 2752926 -239911427 - L2 LINE L2 0 3272 2813 740 165 104 0 chr1 2753504 2753668 -239910685 - MER105 DNA DNA -7 197 17 268 317 96 54 chr1 2754044 2754211 -239910142 + MER5A DNA MER1_type 14 187 -2 488 355 0 22 chr1 2754358 2754541 -239909812 + (CA)n Simple_repeat Simple_repeat 2 180 0 1432 131 25 0 chr1 2755484 2755720 -239908633 + LTR19B LTR ERV1 339 580 0 416 233 16 0 chr1 2757049 2757178 -239907175 + CT-rich Low_complexity Low_complexity 1 131 0 399 276 146 1 chr1 2759441 2759616 -239904737 - MIR SINE MIR -16 246 49 196 236 125 0 chr1 2760652 2760724 -239903629 + L2 LINE L2 3189 3269 -3 490 249 61 36 chr1 2761059 2761224 -239903129 + MIR SINE MIR 27 195 -67 543 295 61 47 chr1 2761224 2761299 -239903054 - MLT1I LTR MaLR 0 409 337 2129 122 0 39 chr1 2761299 2761611 -239902742 - AluY SINE Alu -11 300 1 543 295 61 47 chr1 2761611 2761813 -239902540 - MLT1I LTR MaLR -72 337 128 2375 113 0 0 chr1 2761837 2762139 -239902214 + AluSx SINE Alu 1 302 -10 310 281 62 25 chr1 2762298 2762458 -239901895 + LTR41 LTR ERVL 1 166 -607 307 234 31 26 chr1 2763592 2763709 -239900644 + LTR41 LTR ERVL 658 795 0 348 294 34 17 chr1 2763985 2764104 -239900249 - MIR3 SINE MIR -75 133 13 2384 93 8 8 chr1 2764183 2764537 -239899816 + THE1A LTR MaLR 2 355 0 2211 110 3 0 chr1 2764617 2764908 -239899445 + AluSp SINE Alu 1 292 -21 193 200 25 0 chr1 2765210 2765250 -239899103 + MER5A DNA MER1_type 15 55 -134 238 272 0 58 chr1 2765718 2765821 -239898532 + L1ME4a LINE L1 5975 6071 -50 1539 226 19 14 chr1 2766870 2767233 -239897120 + MLT1A1 LTR MaLR 1 365 0 230 230 126 46 chr1 2767297 2767384 -239896969 - L2 LINE L2 -4 3268 3175 5186 251 53 44 chr1 2768069 2768274 -239896079 - L1MEc LINE L1 -4158 2238 2036 2279 148 25 39 chr1 2768274 2768658 -239895695 + MSTA LTR MaLR 3 382 -46 2303 92 0 10 chr1 2768658 2768953 -239895400 - AluSc SINE Alu -17 292 1 2279 148 25 39 chr1 2768953 2769000 -239895353 + MSTA LTR MaLR 382 428 0 5186 251 53 44 chr1 2769000 2769519 -239894834 - L1MEc LINE L1 -4360 2036 1523 2159 139 7 0 chr1 2769519 2769829 -239894524 - AluJb SINE Alu 0 312 1 5186 251 53 44 chr1 2769829 2769866 -239894487 - L1MEc LINE L1 -4873 1523 1488 2258 122 0 3 chr1 2769866 2770178 -239894175 - AluSx SINE Alu -1 311 1 5186 251 53 44 chr1 2770178 2771401 -239892952 - L1MEc LINE L1 -4908 1488 234 608 271 133 28 chr1 2772348 2772566 -239891787 - MIR SINE MIR -6 256 16 420 221 43 80 chr1 2772754 2772917 -239891436 - L2 LINE L2 -1 3312 3156 204 40 0 0 chr1 2773858 2773883 -239890470 + (TAGG)n Simple_repeat Simple_repeat 2 26 0 999 157 7 7 chr1 2773930 2774505 -239889848 + (TGGA)n Simple_repeat Simple_repeat 1 575 0 414 290 93 12 chr1 2774592 2774754 -239889599 + MER96 DNA MER1_type? 1 175 0 358 280 0 28 chr1 2774938 2775045 -239889308 + MIR3 SINE MIR 53 156 -52 207 286 81 103 chr1 2775235 2775469 -239888884 - L2 LINE L2 -76 3196 2968 2471 203 44 49 chr1 2776391 2777006 -239887347 - MLT1E1 LTR MaLR 0 654 43 476 294 86 5 chr1 2777151 2777348 -239887005 + MIR SINE MIR 40 252 -10 300 153 17 0 chr1 2777673 2777732 -239886621 + L1ME4a LINE L1 6062 6121 0 350 225 22 0 chr1 2779599 2779688 -239884665 + MER5A DNA MER1_type 16 106 -83 218 244 114 41 chr1 2779902 2780025 -239884328 + L2 LINE L2 3141 3272 0 386 293 60 0 chr1 2781406 2781539 -239882814 + MLT1I LTR MaLR 8 148 -261 284 226 0 0 chr1 2781526 2781588 -239882765 + MLT1I LTR MaLR 87 148 -261 * 349 251 55 86 chr1 2781575 2781738 -239882615 + MLT1I LTR MaLR 87 244 -165 234 293 13 0 chr1 2781783 2781858 -239882495 + MLT1I LTR MaLR 334 409 0 315 0 0 0 chr1 2783591 2783626 -239880727 + (TG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr1 2783627 2783649 -239880704 + (GA)n Simple_repeat Simple_repeat 2 23 0 195 268 0 0 chr1 2783946 2784043 -239880310 + (TG)n Simple_repeat Simple_repeat 1 97 0 237 292 98 19 chr1 2784122 2784300 -239880053 + MIR SINE MIR 19 218 -44 652 238 187 15 chr1 2785717 2786064 -239878289 + MLT1B LTR MaLR 1 384 -6 1912 85 32 3 chr1 2786423 2786705 -239877648 + L1PB1 LINE L1 5861 6150 -1 638 213 101 43 chr1 2786851 2787058 -239877295 - MER20 DNA MER1_type 0 219 1 256 264 0 0 chr1 2787890 2787943 -239876410 + L2 LINE L2 3215 3267 -5 198 236 0 0 chr1 2788534 2788589 -239875764 + (CA)n Simple_repeat Simple_repeat 1 55 0 8672 168 77 86 chr1 2789277 2789683 -239874670 + L1MC3 LINE L1 5416 5824 -1961 1836 156 7 14 chr1 2789683 2789971 -239874382 + AluJb SINE Alu 13 298 -14 2283 123 3 0 chr1 2789973 2790282 -239874071 + AluSg SINE Alu 1 310 0 1460 151 9 22 chr1 2790285 2790517 -239873836 + AluJo SINE Alu 63 291 -21 8672 168 77 86 chr1 2790517 2791200 -239873153 + L1MC3 LINE L1 5827 6515 -1270 505 28 28 0 chr1 2791200 2791271 -239873082 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 8672 168 77 86 chr1 2791271 2791724 -239872629 + L1MC3 LINE L1 6515 6970 -815 341 97 0 81 chr1 2791724 2791786 -239872567 + Alu SINE Alu 242 298 -4 8672 168 77 86 chr1 2791786 2792557 -239871796 + L1MC3 LINE L1 6970 7778 -7 717 246 80 34 chr1 2792630 2792989 -239871364 + MLT1A1 LTR MaLR 1 323 -42 1383 92 0 0 chr1 2792999 2793172 -239871181 - AluSp SINE Alu -9 304 132 1028 74 0 0 chr1 2793322 2793443 -239870910 - AluSp SINE Alu -192 121 1 200 355 84 0 chr1 2793992 2794099 -239870254 - MIR SINE MIR -55 207 92 242 192 0 19 chr1 2794717 2794769 -239869584 - MLT1E3 LTR MaLR -295 329 279 1551 258 28 17 chr1 2794840 2794928 -239869425 + L1M4 LINE L1 3850 3936 -2210 1021 196 25 53 chr1 2794928 2795173 -239869180 + MER8 DNA MER2_type 1 238 -1 1551 258 28 17 chr1 2795173 2795613 -239868740 + L1M4 LINE L1 3936 4387 -1759 2118 127 3 3 chr1 2795613 2795913 -239868440 + AluSq SINE Alu 1 300 -13 748 138 58 0 chr1 2795917 2796055 -239868298 - L1MA9 LINE L1 -97 6215 6070 * 584 171 0 0 chr1 2796033 2796138 -239868215 + L1MA9 LINE L1 6203 6307 -5 * 842 227 34 15 chr1 2796143 2796407 -239867946 + L1M4 LINE L1 4374 4642 -1504 1144 165 0 0 chr1 2796408 2796584 -239867769 + AluSg/x SINE Alu 128 303 -7 1663 261 35 23 chr1 2796584 2796643 -239867710 + L1M4 LINE L1 4648 4705 -1441 2167 130 17 0 chr1 2796643 2796944 -239867409 + AluSq SINE Alu 1 306 -7 1088 79 22 11 chr1 2796954 2797132 -239867221 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 735 62 0 0 chr1 2797132 2797229 -239867124 + (GGAA)n Simple_repeat Simple_repeat 1 97 0 1663 261 35 23 chr1 2797229 2797758 -239866595 + L1M4 LINE L1 4712 5255 -891 379 84 0 42 chr1 2798021 2798115 -239866238 - AluSp/q SINE Alu 0 303 243 241 173 0 67 chr1 2998422 2998497 -239665856 + GA-rich Low_complexity Low_complexity 3 72 0 328 282 42 33 chr1 2998573 2998786 -239665567 - MER113 DNA MER1_type? -298 223 9 407 130 0 130 chr1 2999505 2999570 -239664783 + MADE1 DNA Mariner 1 52 -28 2452 67 0 0 chr1 2999570 2999870 -239664483 - AluY SINE Alu -11 300 1 407 130 0 130 chr1 2999870 2999896 -239664457 + MADE1 DNA Mariner 52 80 0 609 244 38 38 chr1 3000283 3000521 -239663832 + LTR37B LTR ERV1 204 441 -27 25 0 0 0 chr1 3001260 3001285 -239663068 + GC_rich Low_complexity Low_complexity 1 25 0 721 278 28 0 chr1 3001310 3001522 -239662831 - MIR SINE MIR 0 262 45 3875 134 17 26 chr1 3003818 3004068 -239660285 + MER50 LTR ERV1 1 252 -482 2392 107 13 43 chr1 3004068 3004443 -239659910 + THE1B LTR MaLR 1 364 0 3875 134 17 26 chr1 3004443 3004910 -239659443 + MER50 LTR ERV1 252 711 -23 1027 257 68 31 chr1 3005268 3005725 -239658628 - MLT1H LTR MaLR 0 549 1 480 351 53 1 chr1 3005814 3006132 -239658221 + ERVL LTR ERVL 1899 2234 -2762 285 352 61 19 chr1 3006237 3006663 -239657690 + ERVL LTR ERVL 2422 2885 -2879 1785 129 58 0 chr1 3006670 3006948 -239657405 + AluSx SINE Alu 18 311 -1 198 103 0 0 chr1 3006948 3006977 -239657376 + (GA)n Simple_repeat Simple_repeat 1 29 0 792 369 38 19 chr1 3007243 3008029 -239656324 + ERVL LTR ERVL 3066 3866 -1898 494 296 32 16 chr1 3008143 3008332 -239656021 + ERVL LTR ERVL 4049 4240 -1524 529 305 80 5 chr1 3008431 3008644 -239655709 + ERVL LTR ERVL 4385 4613 -1151 2484 93 49 60 chr1 3008888 3008911 -239655442 + MER4B LTR ERV1 1 23 -587 2254 114 0 0 chr1 3008911 3009218 -239655135 + AluSq SINE Alu 1 307 -6 2484 93 49 60 chr1 3009218 3009460 -239654893 + MER4B LTR ERV1 23 261 -349 2102 117 13 0 chr1 3009460 3009760 -239654593 + AluSx SINE Alu 1 304 -8 2484 93 49 60 chr1 3009760 3009979 -239654374 + MER4B LTR ERV1 261 481 -129 6849 26 5 1 chr1 3009979 3011545 -239652808 + L1PA3 LINE L1 4608 6177 0 857 104 22 0 chr1 3011547 3011681 -239652672 + MER4B LTR ERV1 474 610 0 587 340 22 19 chr1 3011682 3011997 -239652356 + ERVL LTR ERVL 5027 5342 -422 728 305 128 31 chr1 3013403 3013918 -239650435 - MLT1K LTR MaLR -10 578 14 1378 165 53 8 chr1 3015745 3015988 -239648365 + AluJo SINE Alu 1 254 -58 1086 178 28 19 chr1 3016061 3016274 -239648079 + AluJb SINE Alu 91 305 -7 220 345 95 0 chr1 3017662 3017778 -239646575 - MIR3 SINE MIR -50 158 32 256 328 56 16 chr1 3018934 3019059 -239645294 - MIR SINE MIR -73 189 60 257 304 33 0 chr1 3019713 3019805 -239644548 + MER21B LTR ERV1 2 96 -767 359 31 0 137 chr1 3019884 3020188 -239644165 + (CTGGGG)n Simple_repeat Simple_repeat 1 262 0 742 218 38 144 chr1 3020953 3021348 -239643005 + MER51C LTR ERV1 288 640 0 231 204 0 0 chr1 3021652 3021706 -239642647 + (CA)n Simple_repeat Simple_repeat 1 54 0 251 83 0 0 chr1 3021795 3021831 -239642522 + MLT2C2 LTR ERVL 429 464 0 533 143 11 0 chr1 3021837 3021928 -239642425 - L1MB7 LINE L1 -207 5977 5886 2355 88 0 0 chr1 3023154 3023459 -239640894 + AluSx SINE Alu 1 305 -7 237 176 39 78 chr1 3024011 3024113 -239640240 + MLT1H LTR MaLR 419 516 -33 271 275 43 72 chr1 3025474 3025612 -239638741 + MIR3 SINE MIR 3 136 -72 1052 273 68 5 chr1 3026154 3026538 -239637815 - MLT2D LTR ERVL 0 414 7 299 357 65 11 chr1 3027011 3027196 -239637157 - MIR SINE MIR -2 260 66 191 174 0 65 chr1 3027305 3027351 -239637002 - MIR SINE MIR -124 138 96 229 360 23 0 chr1 3028050 3028136 -239636217 + MIR SINE MIR 77 164 -98 230 148 21 43 chr1 3028525 3028598 -239635755 + MER91 DNA MER1_type 1 35 -105 369 324 81 23 chr1 3028641 3028838 -239635515 + MIR SINE MIR 43 248 -14 1439 194 56 24 chr1 3029417 3029555 -239634798 + MLT1A1 LTR MaLR 15 147 -218 1847 147 0 66 chr1 3029555 3029676 -239634677 + AluJb SINE Alu 1 128 -184 2389 68 0 0 chr1 3029676 3029970 -239634383 - AluY SINE Alu -17 294 1 1847 147 0 66 chr1 3029970 3030182 -239634171 + AluJb SINE Alu 128 312 0 1439 194 56 24 chr1 3030182 3030383 -239633970 + MLT1A1 LTR MaLR 147 365 0 226 232 0 36 chr1 3030433 3030489 -239633864 - L2 LINE L2 -6 3307 3254 341 236 6 0 chr1 3031434 3031608 -239632745 + (CA)n Simple_repeat Simple_repeat 2 176 0 186 118 0 0 chr1 3033347 3033381 -239630972 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 2085 122 148 16 chr1 3033401 3033779 -239630574 + MSTA LTR MaLR 1 428 0 558 264 110 50 chr1 3034064 3034428 -239629925 - MLT1H LTR MaLR -9 540 155 519 306 144 4 chr1 3034870 3035174 -239629179 - L2 LINE L2 -230 3083 2741 2438 121 8 32 chr1 3035633 3036006 -239628347 - THE1B LTR MaLR 0 364 1 625 275 39 14 chr1 3036615 3036822 -239627531 + MLT1K LTR MaLR 361 572 -16 1255 244 138 14 chr1 3038326 3038740 -239625613 - MLT1C LTR MaLR 0 467 3 880 261 64 16 chr1 3042728 3043042 -239621311 + MLT1J LTR MaLR 165 493 -18 217 362 143 0 chr1 3043059 3043255 -239621098 + L2 LINE L2 2583 2806 -508 267 336 39 0 chr1 3047651 3047755 -239616598 + L3b LINE CR1 1145 1252 -331 348 259 0 0 chr1 3050241 3050376 -239613977 + (CA)n Simple_repeat Simple_repeat 2 136 0 247 265 48 0 chr1 3050376 3050459 -239613894 + (CATG)n Simple_repeat Simple_repeat 4 90 0 488 242 7 0 chr1 3050461 3050614 -239613739 + (CA)n Simple_repeat Simple_repeat 1 154 0 614 243 4 6 chr1 3050628 3051138 -239613215 + (CA)n Simple_repeat Simple_repeat 1 509 0 3025 270 108 28 chr1 3051543 3053015 -239611338 + L1MC4 LINE L1 6461 7995 0 445 285 91 0 chr1 3053156 3053342 -239611011 + L1MC5 LINE L1 6980 7182 -779 301 238 0 12 chr1 3053639 3053719 -239610634 + L1MC5 LINE L1 7696 7774 -187 438 259 12 42 chr1 3058589 3058755 -239605598 + MER5B DNA MER1_type 1 161 -28 389 331 42 0 chr1 3060705 3060847 -239603506 + MIR3 SINE MIR 12 159 -49 687 137 0 0 chr1 3061609 3061733 -239602620 + (CA)n Simple_repeat Simple_repeat 1 124 0 288 130 0 0 chr1 3061835 3061881 -239602472 + (CA)n Simple_repeat Simple_repeat 1 46 0 184 151 208 57 chr1 3063515 3063568 -239600785 - L2 LINE L2 -60 3253 3193 208 268 146 0 chr1 3071284 3071407 -239592946 - L2 LINE L2 -27 3245 3105 640 105 0 0 chr1 3073840 3073935 -239590418 + L1P LINE L1 45 139 -6007 223 289 67 83 chr1 3073992 3074172 -239590181 + L2 LINE L2 3096 3272 0 483 283 54 30 chr1 3074724 3074806 -239589547 + L1M4 LINE L1 2655 2734 -3412 8247 60 4 5 chr1 3074806 3075814 -239588539 - LTR13 LTR ERVK 0 1007 1 483 283 54 30 chr1 3075814 3075897 -239588456 + L1M4 LINE L1 2734 2824 -3322 1241 171 19 0 chr1 3075899 3076115 -239588238 + AluJb SINE Alu 85 304 -8 900 292 62 54 chr1 3076118 3076491 -239587862 + L1M4 LINE L1 2855 3230 -2916 3681 49 7 0 chr1 3076536 3076986 -239587367 + L1PA4 LINE L1 5702 6154 -1 1251 139 0 0 chr1 3076986 3077173 -239587180 + AluSg/x SINE Alu 124 310 0 260 329 84 21 chr1 3077382 3077525 -239586828 + L1MC4 LINE L1 5688 5839 -1969 666 280 107 81 chr1 3077645 3079557 -239584796 + L1MC4 LINE L1 5860 7899 -143 209 83 28 0 chr1 3080479 3080515 -239583838 + (CA)n Simple_repeat Simple_repeat 1 37 0 857 325 109 19 chr1 3080515 3081238 -239583115 + L1ME3A LINE L1 5316 6103 -67 * 4656 187 57 16 chr1 3081234 3082402 -239581951 + L1MC2 LINE L1 4967 6206 -138 1926 147 3 16 chr1 3082402 3082708 -239581645 + AluJb SINE Alu 11 312 0 4656 187 57 16 chr1 3082708 3082852 -239581501 + L1MC2 LINE L1 6206 6343 -1 376 325 60 65 chr1 3084203 3084992 -239579361 - L1M4 LINE L1 -2984 3162 2378 1662 234 62 77 chr1 3085131 3086077 -239578276 + L1MC5 LINE L1 6861 7792 -169 979 182 44 0 chr1 3087530 3087711 -239576642 + MER53 DNA DNA 1 189 0 789 247 18 0 chr1 3089377 3089547 -239574806 + MIR SINE MIR 81 253 -9 2584 55 0 0 chr1 3093900 3094211 -239570142 + AluY SINE Alu 1 311 0 1679 83 0 0 chr1 3094591 3094808 -239569545 + AluSq SINE Alu 87 303 -10 1544 197 0 45 chr1 3095774 3096083 -239568270 + AluJb SINE Alu 1 295 -17 961 102 16 0 chr1 3098364 3098491 -239565862 + AluSq/x SINE Alu 1 129 -183 898 191 54 112 chr1 3098934 3099248 -239565105 + MLT1K LTR MaLR 293 588 0 232 237 105 13 chr1 3099248 3099324 -239565029 - L2 LINE L2 -5 3308 3226 745 280 92 9 chr1 3099379 3099727 -239564626 + MLT1I LTR MaLR 23 449 -1 623 318 114 56 chr1 3099954 3100627 -239563726 + L1M4 LINE L1 2890 3660 -2486 1002 221 72 0 chr1 3100627 3100835 -239563518 + MER58A DNA MER1_type 1 223 -1 623 318 114 56 chr1 3100835 3100920 -239563433 + L1M4 LINE L1 3660 3739 -2407 408 193 76 17 chr1 3100945 3101064 -239563289 - L1MC1 LINE L1 -17 6316 6191 266 236 0 0 chr1 3101135 3101190 -239563163 + L2 LINE L2 3213 3267 -5 1756 131 3 122 chr1 3101374 3101586 -239562767 - AluJo SINE Alu 0 302 145 1460 174 7 18 chr1 3101586 3101868 -239562485 - AluSc SINE Alu -30 279 1 1756 131 3 122 chr1 3101868 3101998 -239562355 - AluJo SINE Alu -157 145 1 497 253 25 81 chr1 3102289 3102649 -239561704 - L1M4 LINE L1 -812 5334 4995 269 111 44 0 chr1 3102649 3102694 -239561659 - MIR SINE MIR -118 144 98 382 319 104 8 chr1 3102995 3103283 -239561070 - L1ME LINE L1 -521 5641 5332 312 343 30 54 chr1 3103363 3103529 -239560824 - L1ME LINE L1 -1081 5065 4904 1902 163 132 37 chr1 3103540 3104001 -239560352 + MLT1D LTR MaLR 1 505 0 359 297 72 7 chr1 3104036 3104174 -239560179 - L1ME LINE L1 -1331 4815 4669 21 0 0 0 chr1 3104180 3104201 -239560152 + AT_rich Low_complexity Low_complexity 1 21 0 803 175 35 14 chr1 3104201 3104344 -239560009 + AluJo SINE Alu 26 171 -141 940 195 12 0 chr1 3104487 3104656 -239559697 + FRAM SINE Alu 1 168 -8 2863 246 161 22 chr1 3104860 3106033 -239558320 + L1MEc LINE L1 32 1367 -5029 1983 161 0 3 chr1 3106289 3106593 -239557760 - AluJb SINE Alu -9 303 1 1657 133 130 7 chr1 3106775 3107068 -239557285 - MER2 DNA MER2_type -15 330 2 21 0 0 0 chr1 3107160 3107181 -239557172 + AT_rich Low_complexity Low_complexity 1 21 0 2443 67 0 0 chr1 3107240 3107552 -239556801 - AluY SINE Alu 0 312 1 628 178 138 13 chr1 3108055 3108207 -239556146 - MER2 DNA MER2_type -16 329 159 1390 236 114 43 chr1 3109740 3110257 -239554096 - L1MD2 LINE L1 -239 6120 5567 * 8246 228 49 34 chr1 3110245 3112899 -239551454 - L1M4 LINE L1 -1314 4832 2137 2345 126 57 94 chr1 3112899 3113095 -239551258 - Tigger1 DNA MER2_type -1 2417 2215 2210 123 20 0 chr1 3113095 3113396 -239550957 + AluSx SINE Alu 1 307 -5 2345 126 57 94 chr1 3113396 3113435 -239550918 - Tigger1 DNA MER2_type -203 2215 2176 1790 174 7 0 chr1 3113435 3113723 -239550630 + AluJo SINE Alu 6 295 -17 2345 126 57 94 chr1 3113723 3114028 -239550325 - Tigger1 DNA MER2_type -242 2176 1896 2302 105 0 0 chr1 3117230 3117525 -239546828 + AluSx SINE Alu 1 295 -17 569 272 82 22 chr1 3118406 3118770 -239545583 + MLT1D LTR MaLR 1 386 -119 338 325 25 12 chr1 3118871 3119034 -239545319 + MLT1D LTR MaLR 341 505 0 3571 105 18 0 chr1 3120288 3120793 -239543560 - MER75 DNA T2_type 0 514 1 1709 175 104 19 chr1 3121731 3122096 -239542257 + MSTD LTR MaLR 1 396 0 421 222 10 10 chr1 3122096 3122195 -239542158 + L1MD1 LINE L1 6143 6241 -1 573 314 63 35 chr1 3122299 3123253 -239541100 + L1ME4a LINE L1 4350 5330 -816 655 268 136 68 chr1 3123266 3123887 -239540466 + L1MC4 LINE L1 6866 7548 -494 2496 80 0 0 chr1 3123887 3124189 -239540164 + AluY SINE Alu 1 302 -9 655 268 136 68 chr1 3124189 3124317 -239540036 + L1MC4 LINE L1 7548 7666 -376 406 296 73 14 chr1 3125390 3125610 -239538743 + L1MC5 LINE L1 7622 7854 -107 2013 129 31 0 chr1 3126324 3126618 -239537735 + AluSx SINE Alu 1 303 -9 952 212 47 0 chr1 3127413 3127606 -239536747 + Tigger7 DNA MER2_type 32 233 -2254 1037 134 85 27 chr1 3127620 3127843 -239536510 + Tigger7 DNA MER2_type 2254 2489 -2 1254 168 74 1 chr1 3128185 3128615 -239535738 + MER21B LTR ERV1 1 505 -358 534 143 0 12 chr1 3129054 3129138 -239535215 - FLAM_A SINE Alu -20 122 40 282 56 0 0 chr1 3130970 3131006 -239533347 + (CA)n Simple_repeat Simple_repeat 1 36 0 240 294 81 22 chr1 3131045 3131181 -239533172 - L2 LINE L2 -2 3311 3168 244 108 0 0 chr1 3131739 3131776 -239532577 - U2 snRNA snRNA -151 37 1 416 245 167 30 chr1 3132147 3132380 -239531973 + MLT1H LTR MaLR 97 361 -188 440 276 44 22 chr1 3132477 3132702 -239531651 + L1ME3A LINE L1 5721 5950 -220 311 191 0 11 chr1 3134190 3134279 -239530074 + (CCCTA)n Simple_repeat Simple_repeat 3 90 0 2257 113 3 6 chr1 3134728 3135039 -239529314 - AluSg SINE Alu 0 310 1 647 281 115 0 chr1 3135616 3135982 -239528371 + L1ME4a LINE L1 5481 5888 -233 4644 179 22 42 chr1 3136140 3137652 -239526701 + L1MA6 LINE L1 4800 6277 -23 220 290 30 2 chr1 3138187 3138263 -239526090 + MIR SINE MIR 25 103 -105 348 224 60 82 chr1 3138426 3138609 -239525744 - MIR SINE MIR -51 211 33 335 286 0 0 chr1 3139586 3139663 -239524690 + L2 LINE L2 3233 3309 -4 1756 155 6 54 chr1 3139898 3140047 -239524306 + AluJb SINE Alu 1 129 -183 2276 104 7 0 chr1 3140047 3140344 -239524009 + AluSx SINE Alu 1 299 -13 1756 155 6 54 chr1 3140344 3140511 -239523842 + AluJb SINE Alu 129 302 -10 24 0 0 0 chr1 3140668 3140692 -239523661 + GC_rich Low_complexity Low_complexity 1 24 0 1662 178 45 116 chr1 3142536 3143071 -239521282 + L1MB3 LINE L1 5686 6182 -1 890 199 0 6 chr1 3143790 3143978 -239520375 - FRAM SINE Alu 0 176 1 253 298 12 12 chr1 3144517 3144601 -239519752 - L3 LINE CR1 -77 1500 1417 1926 114 73 0 chr1 3144773 3145045 -239519308 + AluSx SINE Alu 11 302 -10 2382 101 7 0 chr1 3145314 3145622 -239518731 - AluSx SINE Alu -2 310 1 383 288 30 0 chr1 3145667 3145799 -239518554 + L1MC4 LINE L1 5765 5900 -1908 331 285 46 39 chr1 3146445 3146575 -239517778 + L1MC4 LINE L1 6573 6703 -1339 2031 138 10 0 chr1 3146576 3146866 -239517487 - AluJo SINE Alu -18 294 2 899 187 49 0 chr1 3147188 3147391 -239516962 + MER72 LTR ERV1 5 217 -505 2066 168 23 5 chr1 3147424 3147822 -239516531 + MER72 LTR ERV1 318 722 0 1856 163 7 10 chr1 3147880 3148181 -239516172 - AluJb SINE Alu -12 300 1 1068 118 40 79 chr1 3149325 3149553 -239514800 + MER20 DNA MER1_type 1 219 0 268 263 40 0 chr1 3149605 3149681 -239514672 + L2 LINE L2 3189 3267 -5 * 353 295 96 18 chr1 3149677 3149843 -239514510 - MIR SINE MIR -19 243 65 1733 172 3 0 chr1 3149954 3150250 -239514103 + AluSx SINE Alu 1 297 -15 341 281 62 16 chr1 3150376 3150437 -239513916 + AluSq SINE Alu 87 144 -159 1684 112 29 0 chr1 3150437 3150678 -239513675 + AluSx SINE Alu 52 299 -13 341 281 62 16 chr1 3150678 3150744 -239513609 + AluSq SINE Alu 144 220 -83 1757 172 7 3 chr1 3151856 3152159 -239512194 + AluJb SINE Alu 1 304 -8 358 214 11 11 chr1 3154009 3154098 -239510255 + MER20 DNA MER1_type 130 218 -1 251 279 25 13 chr1 3154150 3154229 -239510124 + L2 LINE L2 3188 3267 -5 931 106 0 87 chr1 3154381 3154511 -239509842 - L1PB1 LINE L1 0 6151 6036 2073 132 7 3 chr1 3154511 3154821 -239509532 - AluSx SINE Alu -1 311 1 931 106 0 87 chr1 3154821 3154851 -239509502 - L1PB1 LINE L1 -115 6036 6005 1109 163 5 5 chr1 3155047 3155237 -239509116 + AluJo SINE Alu 107 296 -16 244 333 21 11 chr1 3157854 3157947 -239506406 + MIR SINE MIR 98 191 -71 244 365 17 9 chr1 3158965 3159080 -239505273 + L2 LINE L2 2953 3068 -245 198 313 198 0 chr1 3159384 3159480 -239504873 + MIR SINE MIR 32 146 -116 221 286 0 0 chr1 3159480 3159529 -239504824 + G-rich Low_complexity Low_complexity 4 52 0 326 105 0 18 chr1 3159636 3159693 -239504660 + (GGGGA)n Simple_repeat Simple_repeat 3 58 0 424 250 85 45 chr1 3160451 3160675 -239503678 + MLT1K LTR MaLR 356 588 0 372 237 61 69 chr1 3160947 3161078 -239503275 - L2 LINE L2 0 3313 3184 225 94 0 0 chr1 3161091 3161123 -239503230 + (CAGGG)n Simple_repeat Simple_repeat 3 34 0 300 296 72 13 chr1 3161123 3161275 -239503078 - L2 LINE L2 -270 3043 2883 1525 124 87 4 chr1 3161302 3161577 -239502776 - AluJb SINE Alu -14 298 1 1406 246 54 39 chr1 3161582 3162115 -239502238 + MER74A LTR ERVL 14 554 -4 269 347 151 8 chr1 3162115 3162354 -239501999 - L2 LINE L2 -418 2896 2624 192 349 121 6 chr1 3162694 3162860 -239501493 + L2 LINE L2 3075 3259 -54 948 235 70 78 chr1 3163450 3163975 -239500378 - L1M4 LINE L1 -2238 3908 3381 1782 170 83 9 chr1 3163975 3164299 -239500054 + MER7A DNA MER2_type 1 346 0 948 235 70 78 chr1 3164299 3165006 -239499347 - L1M4 LINE L1 -2765 3381 2486 1487 184 27 4 chr1 3165010 3165485 -239498868 + MER68 LTR ERV1 3 562 0 702 271 46 8 chr1 3165486 3165726 -239498627 - L1M4 LINE L1 -3688 2458 2210 683 265 62 65 chr1 3165746 3166017 -239498336 + L1MC4a LINE L1 5613 5884 -1924 1936 125 7 7 chr1 3166017 3166314 -239498039 + AluSx SINE Alu 2 298 -14 683 265 62 65 chr1 3166314 3166397 -239497956 + L1MC4a LINE L1 5884 5966 -1842 315 267 35 0 chr1 3166711 3166797 -239497556 + MIR SINE MIR 128 216 -46 194 242 0 76 chr1 3166821 3166887 -239497466 + L2 LINE L2 3206 3266 -6 1487 182 163 0 chr1 3167534 3167847 -239496506 - MER47A DNA MER2_type 0 366 3 250 312 91 0 chr1 3168590 3168667 -239495686 + MER91A DNA MER1_type 2 85 -111 4680 223 99 2 chr1 3169109 3170426 -239493927 + Charlie1 DNA MER1_type 1 2755 -6 239 281 47 0 chr1 3170838 3170902 -239493451 + MLT1K LTR MaLR 193 259 -329 462 207 9 17 chr1 3170980 3171096 -239493257 + MLT1D LTR MaLR 391 505 0 435 273 9 0 chr1 3172289 3172399 -239491954 - MIR SINE MIR -75 187 77 439 213 131 0 chr1 3173177 3173299 -239491054 + Charlie1 DNA MER1_type 2337 2474 -287 185 350 90 11 chr1 3173887 3174064 -239490289 - L2 LINE L2 -1038 2276 2086 366 254 79 32 chr1 3174349 3174475 -239489878 + MER5A DNA MER1_type 3 134 -55 256 221 29 150 chr1 3174372 3174478 -239489875 - MER5A DNA MER1_type -24 165 78 * 2060 139 0 13 chr1 3174478 3174794 -239489559 - AluSx SINE Alu 0 312 1 256 221 29 150 chr1 3174794 3174827 -239489526 - MER5A DNA MER1_type -111 78 43 316 281 30 59 chr1 3175601 3175736 -239488617 - MER5B DNA MER1_type -29 149 19 1276 135 18 11 chr1 3175917 3176168 -239488185 + L1MA1 LINE L1 5961 6220 -82 198 103 0 0 chr1 3176176 3176205 -239488148 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 2028 136 0 13 chr1 3176214 3176524 -239487829 - AluSx SINE Alu -6 306 1 608 97 11 0 chr1 3176524 3176610 -239487743 + L1MA1 LINE L1 6209 6298 -4 258 298 36 0 chr1 3176733 3176817 -239487536 + MER5A DNA MER1_type 14 100 -89 338 289 30 52 chr1 3177473 3177608 -239486745 + MLT1J LTR MaLR 326 457 -54 370 284 99 12 chr1 3177653 3177815 -239486538 + HAL1 LINE L1 1680 1855 -652 33 0 0 0 chr1 3178137 3178170 -239486183 + AT_rich Low_complexity Low_complexity 1 33 0 2433 67 0 13 chr1 3179226 3179540 -239484813 + AluY SINE Alu 1 310 -1 2047 108 0 17 chr1 3180284 3180572 -239483781 + AluSx SINE Alu 1 283 -29 266 243 0 75 chr1 3180751 3180858 -239483495 - L2 LINE L2 -241 3031 2933 2352 94 0 0 chr1 3181479 3181788 -239482565 - AluSx SINE Alu -3 309 1 1914 120 7 7 chr1 3181821 3182112 -239482241 - AluJo SINE Alu -21 291 1 2103 132 0 0 chr1 3182953 3183249 -239481104 - AluSx SINE Alu -16 296 1 481 296 131 5 chr1 3183774 3183980 -239480373 + MIR SINE MIR 2 233 -29 420 294 132 47 chr1 3184102 3184398 -239479955 - MLT1J1 LTR MaLR 0 446 126 2113 78 42 0 chr1 3185275 3185558 -239478795 - AluY SINE Alu -16 295 1 1945 152 76 19 chr1 3186202 3186570 -239477783 - MLT1B LTR MaLR 0 390 2 2283 96 3 0 chr1 3186605 3186907 -239477446 + AluSq SINE Alu 1 303 -10 2312 89 3 0 chr1 3187192 3187494 -239476859 + AluSx SINE Alu 1 303 -9 297 0 0 0 chr1 3187494 3187527 -239476826 + (TA)n Simple_repeat Simple_repeat 1 33 0 639 214 68 24 chr1 3188471 3188654 -239475699 - MLT1D LTR MaLR -190 200 28 2316 76 0 0 chr1 3188873 3189174 -239475179 + AluY SINE Alu 1 301 -10 2111 121 0 19 chr1 3190400 3190715 -239473638 + AluSx SINE Alu 1 309 -3 2220 97 3 0 chr1 3191520 3191828 -239472525 - AluSc SINE Alu 0 309 1 1967 86 0 70 chr1 3192135 3192436 -239471917 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr1 3192436 3192460 -239471893 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 254 29 29 0 chr1 3193810 3193845 -239470508 + (TG)n Simple_repeat Simple_repeat 2 37 0 285 221 0 26 chr1 3193850 3193927 -239470426 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 609 300 91 11 chr1 3194954 3195340 -239469013 + MLT1C LTR MaLR 6 461 -6 2382 70 0 19 chr1 3196291 3196627 -239467726 + AluY SINE Alu 2 331 0 463 265 37 7 chr1 3198463 3198599 -239465754 - MIR3 SINE MIR 0 208 69 1829 126 30 43 chr1 3198661 3198805 -239465548 + AluJb SINE Alu 2 146 -166 2430 62 13 0 chr1 3198805 3199109 -239465244 + AluSp SINE Alu 1 308 -5 1829 126 30 43 chr1 3199109 3199265 -239465088 + AluJb SINE Alu 146 298 -14 2034 95 44 7 chr1 3199821 3200115 -239464238 + AluSg SINE Alu 1 305 -5 223 328 0 0 chr1 3200455 3200519 -239463834 - L2 LINE L2 -3 3310 3247 189 171 0 0 chr1 3201212 3201247 -239463106 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2057 104 0 78 chr1 3201449 3201784 -239462569 + AluSx SINE Alu 1 309 -3 266 340 57 0 chr1 3202968 3203074 -239461279 + MIR SINE MIR 81 192 -70 1256 53 0 0 chr1 3203496 3203647 -239460706 - AluYa8 SINE Alu -12 298 148 278 45 159 0 chr1 3203661 3203705 -239460648 - AluY SINE Alu -120 181 131 2361 52 0 3 chr1 3203705 3204022 -239460331 - AluY SINE Alu 0 316 1 451 238 98 0 chr1 3204202 3204324 -239460029 - L1ME4a LINE L1 -23 6098 5965 2131 122 0 0 chr1 3204510 3204814 -239459539 + AluSx SINE Alu 1 304 -8 2127 105 31 0 chr1 3204903 3205189 -239459164 - AluSx SINE Alu -17 295 1 2459 55 0 0 chr1 3205217 3205509 -239458844 + AluY SINE Alu 1 292 -19 1793 170 38 57 chr1 3205781 3206151 -239458202 - MLT1A1 LTR MaLR -1 364 2 988 159 6 24 chr1 3206214 3206384 -239457969 - FAM SINE Alu -4 171 5 310 372 25 0 chr1 3206428 3206549 -239457804 - L1ME4a LINE L1 -2038 5770 5647 237 264 94 28 chr1 3207061 3207167 -239457186 + MER5A DNA MER1_type 58 170 -19 2387 90 0 0 chr1 3208240 3208550 -239455803 + AluSg SINE Alu 1 310 0 505 277 144 5 chr1 3209100 3209302 -239455051 + MIR SINE MIR 8 226 -36 414 369 7 0 chr1 3209487 3209636 -239454717 + MIR SINE MIR 94 243 -19 1738 165 0 4 chr1 3209862 3210135 -239454218 - AluJb SINE Alu -17 295 24 988 293 123 22 chr1 3210140 3210804 -239453549 - L2 LINE L2 -288 3025 2293 470 276 24 86 chr1 3211127 3211239 -239453114 + MIR SINE MIR 54 149 -113 2192 120 0 7 chr1 3211239 3211547 -239452806 + AluSx SINE Alu 1 306 -6 470 276 24 86 chr1 3211547 3211644 -239452709 + MIR SINE MIR 149 250 -12 309 135 0 0 chr1 3212069 3212121 -239452232 + (CA)n Simple_repeat Simple_repeat 1 52 0 1657 198 36 33 chr1 3212176 3212540 -239451813 + MLT1A1 LTR MaLR 1 365 0 356 279 29 0 chr1 3214598 3214702 -239449651 + MIR SINE MIR 59 165 -97 204 211 0 0 chr1 3216101 3216139 -239448214 + CT-rich Low_complexity Low_complexity 2 39 0 1763 52 39 4 chr1 3216347 3216577 -239447776 - AluY SINE Alu -11 300 63 1886 137 58 0 chr1 3216625 3216918 -239447435 - AluSx SINE Alu -2 310 1 816 163 0 0 chr1 3216961 3217090 -239447263 + AluJb SINE Alu 169 297 -15 2097 134 0 7 chr1 3217107 3217414 -239446939 + AluSx SINE Alu 2 306 -6 311 317 145 0 chr1 3218001 3218222 -239446131 - L2 LINE L2 -186 3086 2834 493 360 87 13 chr1 3218920 3219220 -239445133 + L1MC4a LINE L1 5506 5827 -1981 638 215 85 22 chr1 3219745 3219968 -239444385 + MLT1C LTR MaLR 6 242 -225 260 212 50 10 chr1 3220157 3220256 -239444097 + (CAGCC)n Simple_repeat Simple_repeat 4 106 0 2203 95 0 7 chr1 3220393 3220689 -239443664 + AluSg SINE Alu 1 294 -16 2209 99 7 0 chr1 3220713 3221007 -239443346 + AluSp SINE Alu 1 296 -17 2280 92 0 7 chr1 3221619 3221925 -239442428 - AluSx SINE Alu -8 304 1 848 326 19 19 chr1 3224734 3225163 -239439190 + L1MC4 LINE L1 5643 6071 -1971 * 1780 236 38 11 chr1 3224782 3225260 -239439093 + L1MB7 LINE L1 5686 6176 -8 1670 154 20 29 chr1 3225273 3225579 -239438774 + AluSx SINE Alu 1 303 -9 2347 98 0 0 chr1 3225905 3226210 -239438143 + AluSx SINE Alu 1 305 -7 763 178 0 22 chr1 3226524 3226659 -239437694 + FLAM_C SINE Alu 1 132 -1 6792 61 41 2 chr1 3226683 3227360 -239436993 + LTR13 LTR ERVK 1 727 -280 204 40 0 0 chr1 3227360 3227385 -239436968 + (TC)n Simple_repeat Simple_repeat 2 26 0 6792 61 41 2 chr1 3227385 3227664 -239436689 + LTR13 LTR ERVK 727 994 -13 791 143 71 0 chr1 3227700 3227826 -239436527 + AluJb SINE Alu 154 288 -24 853 181 0 0 chr1 3227826 3227959 -239436394 + FLAM_C SINE Alu 1 133 0 2118 108 3 7 chr1 3228016 3228313 -239436040 + AluSx SINE Alu 1 296 -16 2489 65 0 0 chr1 3228324 3228630 -239435723 + AluSc SINE Alu 1 306 -3 1213 112 0 0 chr1 3228630 3228800 -239435553 + AluSq SINE Alu 134 303 -10 571 252 95 25 chr1 3228800 3229042 -239435311 + L1ME1 LINE L1 5820 6078 -88 2345 113 33 141 chr1 3229051 3229247 -239435106 - Tigger1 DNA MER2_type 0 2418 2202 2373 65 3 0 chr1 3229247 3229540 -239434813 + AluY SINE Alu 4 297 -14 2345 113 33 141 chr1 3229540 3229655 -239434698 - Tigger1 DNA MER2_type -216 2202 2076 2073 88 7 4 chr1 3229655 3229928 -239434425 - AluSx SINE Alu -14 298 25 2345 113 33 141 chr1 3229928 3230057 -239434296 - Tigger1 DNA MER2_type -342 2076 1935 1787 169 0 13 chr1 3230057 3230364 -239433989 + AluJo SINE Alu 1 303 -9 2345 113 33 141 chr1 3230364 3230416 -239433937 - Tigger1 DNA MER2_type -483 1935 1879 1509 106 13 13 chr1 3230416 3230643 -239433710 - AluSc SINE Alu -16 293 67 2345 113 33 141 chr1 3230643 3230673 -239433680 - Tigger1 DNA MER2_type -539 1879 1962 2354 70 0 3 chr1 3230673 3230971 -239433382 + AluY SINE Alu 1 297 -14 2345 113 33 141 chr1 3230971 3231039 -239433314 - Tigger1 DNA MER2_type -455 1963 1889 4901 167 162 5 chr1 3231039 3232097 -239432256 - MER52A LTR ERV1 0 1755 532 195 232 0 0 chr1 3232561 3232617 -239431736 + (CTG)n Simple_repeat Simple_repeat 2 57 0 230 276 0 0 chr1 3232624 3232682 -239431671 - MER52A LTR ERV1 -1697 58 1 384 134 0 0 chr1 3232682 3232749 -239431604 - Tigger1 DNA MER2_type -524 1894 1828 1825 135 56 7 chr1 3232749 3233037 -239431316 - AluSx SINE Alu -10 302 1 484 159 71 26 chr1 3233038 3233151 -239431202 - Tigger1 DNA MER2_type -830 1588 1471 1225 140 0 0 chr1 3233151 3233330 -239431023 - AluSg/x SINE Alu 0 312 134 1929 126 0 7 chr1 3233330 3233616 -239430737 - AluY SINE Alu -7 304 21 8379 116 18 45 chr1 3233618 3233715 -239430638 - Tigger1 DNA MER2_type -940 1478 1380 2336 169 49 5 chr1 3233715 3234123 -239430230 + MSTB1 LTR MaLR 3 428 -4 8379 116 18 45 chr1 3234123 3234210 -239430143 - Tigger1 DNA MER2_type -1038 1380 1292 2070 112 0 11 chr1 3234210 3234549 -239429804 - AluSx SINE Alu 0 336 1 8379 116 18 45 chr1 3234549 3234560 -239429793 - Tigger1 DNA MER2_type -1126 1292 1282 2292 105 0 0 chr1 3234560 3234865 -239429488 - AluSg SINE Alu -5 305 1 8379 116 18 45 chr1 3234865 3235119 -239429234 - Tigger1 DNA MER2_type -1136 1282 1023 2148 110 3 13 chr1 3235119 3235418 -239428935 - AluSx SINE Alu -16 296 1 8379 116 18 45 chr1 3235418 3235519 -239428834 - Tigger1 DNA MER2_type -1395 1023 921 2126 132 0 0 chr1 3235519 3235822 -239428531 + AluSx SINE Alu 1 303 -9 8379 116 18 45 chr1 3235822 3236304 -239428049 - Tigger1 DNA MER2_type -1497 921 428 1978 126 20 3 chr1 3236304 3236606 -239427747 - AluSx SINE Alu -5 307 1 8379 116 18 45 chr1 3236606 3237013 -239427340 - Tigger1 DNA MER2_type -1990 428 12 2155 102 3 3 chr1 3237013 3237307 -239427046 - AluSx SINE Alu -18 294 1 8379 116 18 45 chr1 3237307 3237339 -239427014 - Tigger1 DNA MER2_type -2406 12 39 2296 100 0 0 chr1 3237339 3237639 -239426714 + AluSq SINE Alu 1 300 -13 8379 116 18 45 chr1 3237639 3237678 -239426675 - Tigger1 DNA MER2_type -2378 40 1 199 224 20 0 chr1 3238422 3238471 -239425882 + MIR SINE MIR 98 147 -61 581 186 12 43 chr1 3238694 3238752 -239425601 + L1MC/D LINE L1 5144 5202 -944 2289 38 52 0 chr1 3238752 3239040 -239425313 + AluY SINE Alu 1 303 -8 581 186 12 43 chr1 3239040 3239142 -239425211 + L1MC/D LINE L1 5202 5299 -847 1238 130 42 28 chr1 3239142 3239261 -239425092 + AluSq SINE Alu 1 117 -196 1403 169 9 123 chr1 3239261 3239411 -239424942 + AluJb SINE Alu 2 167 -135 2415 60 0 7 chr1 3239411 3239710 -239424643 + AluY SINE Alu 1 297 -14 1403 169 9 123 chr1 3239710 3239730 -239424623 + AluJb SINE Alu 167 188 -114 2084 113 0 10 chr1 3239730 3240040 -239424313 + AluSq SINE Alu 2 308 -5 1403 169 9 123 chr1 3240040 3240194 -239424159 + AluJb SINE Alu 188 290 -12 2184 100 7 0 chr1 3240203 3240503 -239423850 + AluSq SINE Alu 1 302 -11 1238 130 42 28 chr1 3240503 3240588 -239423765 + AluSq SINE Alu 124 218 -95 33 0 0 0 chr1 3240617 3240650 -239423703 + AT_rich Low_complexity Low_complexity 1 33 0 1701 153 3 0 chr1 3240670 3240958 -239423395 + L1MC/D LINE L1 5324 5612 -732 933 126 0 22 chr1 3241010 3241145 -239423208 + FLAM_C SINE Alu 1 132 -1 2195 73 0 0 chr1 3241545 3241820 -239422533 + AluY SINE Alu 1 275 -36 270 0 0 0 chr1 3241824 3241854 -239422499 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2405 61 3 0 chr1 3242656 3242950 -239421403 - AluY SINE Alu -16 295 1 374 226 2 11 chr1 3243120 3243221 -239421132 + L1M4 LINE L1 4934 5035 -1111 1703 159 7 21 chr1 3243221 3243510 -239420843 - AluJo SINE Alu -19 293 9 1660 159 66 17 chr1 3243541 3243830 -239420523 + AluSx SINE Alu 1 303 -9 2209 190 37 36 chr1 3243863 3244074 -239420279 + L1MB3 LINE L1 4668 4877 -1299 2057 99 44 7 chr1 3244074 3244367 -239419986 + AluSg SINE Alu 1 304 -6 2209 190 37 36 chr1 3244367 3244803 -239419550 + L1MB3 LINE L1 4877 5318 -858 442 76 38 13 chr1 3244803 3244882 -239419471 + L1MA5 LINE L1 6220 6300 0 2209 190 37 36 chr1 3244882 3244902 -239419451 + L1MB3 LINE L1 5318 5336 -840 302 318 0 37 chr1 3244954 3245061 -239419292 - L1MC4 LINE L1 -1336 6706 6604 2511 165 35 4 chr1 3245099 3245608 -239418745 + L1MB3 LINE L1 5304 5828 -355 2249 50 0 14 chr1 3245609 3245887 -239418466 + AluY SINE Alu 1 274 -37 2234 71 27 3 chr1 3245888 3246185 -239418168 + AluSc SINE Alu 1 304 -5 1493 166 37 24 chr1 3246286 3246582 -239417771 + AluJb SINE Alu 1 300 -12 2155 114 3 0 chr1 3246629 3246935 -239417418 - AluSq SINE Alu -6 307 1 2454 61 0 0 chr1 3246946 3247243 -239417110 - AluY SINE Alu -14 297 1 1010 173 9 91 chr1 3247296 3247465 -239416888 - AluJo SINE Alu -15 297 150 2346 78 0 0 chr1 3247465 3247760 -239416593 - AluY SINE Alu -16 295 1 1010 173 9 91 chr1 3247760 3247821 -239416532 - AluJo SINE Alu -162 150 86 1804 205 13 9 chr1 3247838 3248264 -239416089 + L1MB8 LINE L1 5220 5642 -532 242 196 71 0 chr1 3248326 3248382 -239415971 - MER21B LTR ERV1 -111 752 693 764 231 12 12 chr1 3248393 3248566 -239415787 - MER21B LTR ERV1 -652 211 39 450 214 8 26 chr1 3248590 3248707 -239415646 + L1MB8 LINE L1 6055 6169 -9 206 233 0 155 chr1 3249975 3250091 -239414262 - MER5A DNA MER1_type -30 159 62 396 319 65 14 chr1 3250091 3250334 -239414019 - L1MC5 LINE L1 -30 7931 7669 1611 194 0 25 chr1 3250334 3250649 -239413704 + AluJb SINE Alu 5 311 -1 396 319 65 14 chr1 3250649 3250697 -239413656 - L1MC5 LINE L1 -292 7669 7625 364 286 202 19 chr1 3250862 3251075 -239413278 + L1ME1 LINE L1 5910 6161 -5 379 279 35 64 chr1 3251076 3251248 -239413105 - L1MC5 LINE L1 -259 7702 7536 1418 83 0 0 chr1 3251684 3251864 -239412489 - AluSq SINE Alu 0 313 134 2307 73 0 3 chr1 3251865 3252165 -239412188 - AluY SINE Alu -12 299 1 2181 103 7 3 chr1 3252213 3252513 -239411840 + AluSx SINE Alu 1 301 -11 2427 65 0 10 chr1 3252513 3252822 -239411531 + AluY SINE Alu 1 306 -5 203 335 40 74 chr1 3252884 3253060 -239411293 - L2 LINE L2 0 3313 3144 232 188 150 50 chr1 3253250 3253330 -239411023 - MER3 DNA MER1_type -1 208 121 1406 113 39 18 chr1 3253331 3253560 -239410793 + AluSg/x SINE Alu 76 309 -1 2178 113 0 3 chr1 3254045 3254346 -239410007 + AluSx SINE Alu 1 300 -12 2201 89 7 0 chr1 3254410 3254715 -239409638 + AluSx SINE Alu 1 307 0 1545 82 0 0 chr1 3254770 3254965 -239409388 + AluSx SINE Alu 1 195 -117 2152 96 0 23 chr1 3254973 3255275 -239409078 + AluSx SINE Alu 1 295 -17 261 369 31 41 chr1 3255414 3255609 -239408744 + MIR SINE MIR 20 212 -50 27 18 8 0 chr1 3256806 3256884 -239407469 + GC_rich Low_complexity Low_complexity 1 34 0 27 73 0 0 chr1 3257224 3257279 -239407074 + GC_rich Low_complexity Low_complexity 1 55 0 2546 61 0 0 chr1 3258338 3258649 -239405704 - AluY SINE Alu 0 311 1 819 217 18 24 chr1 3258649 3258807 -239405546 - AluJo/FRAM SINE Alu -7 295 137 3971 141 157 57 chr1 3258812 3260050 -239404303 - pTR5 LTR ERV1 -111 2025 6 863 97 0 0 chr1 3260051 3260164 -239404189 - AluSq/x SINE Alu -197 115 3 228 297 148 0 chr1 3260272 3260310 -239404043 + MIR SINE MIR 71 102 -160 1829 171 0 16 chr1 3260310 3260626 -239403727 - AluJb SINE Alu -1 311 1 228 297 148 0 chr1 3260626 3260688 -239403665 + MIR SINE MIR 102 186 -76 903 181 75 0 chr1 3260869 3261029 -239403324 + FAM SINE Alu 1 172 -3 1616 251 147 37 chr1 3261511 3261914 -239402439 + L2 LINE L2 1723 2080 -1233 1744 141 52 21 chr1 3261914 3262205 -239402148 - AluJo SINE Alu -12 300 1 1616 251 147 37 chr1 3262205 3262221 -239402132 + L2 LINE L2 2080 2093 -1220 2147 121 0 0 chr1 3262221 3262526 -239401827 - AluSx SINE Alu -7 305 1 1616 251 147 37 chr1 3262526 3263307 -239401046 + L2 LINE L2 2093 3307 -6 2395 76 0 0 chr1 3263442 3263743 -239400610 + AluY SINE Alu 1 301 -10 2081 121 3 0 chr1 3263773 3264062 -239400291 + AluSg SINE Alu 1 290 -20 1167 188 31 5 chr1 3264062 3264285 -239400068 - AluJb SINE Alu -83 229 1 2426 76 0 0 chr1 3264332 3264636 -239399717 + AluY SINE Alu 1 304 -7 901 171 213 43 chr1 3264668 3264926 -239399427 + AluJb SINE Alu 1 302 0 314 315 132 24 chr1 3265012 3265225 -239399128 + L1ME3A LINE L1 5926 6161 -9 1969 126 13 13 chr1 3265261 3265570 -239398783 - AluY SINE Alu -2 309 1 1805 156 0 34 chr1 3265871 3266014 -239398339 + AluJo SINE Alu 1 147 -165 2257 73 0 33 chr1 3266014 3266316 -239398037 + AluY SINE Alu 7 298 -13 1805 156 0 34 chr1 3266316 3266493 -239397860 + AluJo SINE Alu 147 310 -2 1408 145 161 0 chr1 3266992 3267247 -239397106 + AluJb SINE Alu 5 300 -2 2225 84 3 17 chr1 3267274 3267573 -239396780 - AluSp SINE Alu -18 295 1 1935 148 0 13 chr1 3267573 3267876 -239396477 - AluJb SINE Alu -13 299 1 2406 21 0 3 chr1 3268182 3268515 -239395838 + AluY SINE Alu 1 332 0 730 304 26 7 chr1 3269239 3269483 -239394870 + MIR SINE MIR 3 249 -13 287 226 0 0 chr1 3269526 3269579 -239394774 - L2 LINE L2 -12 3260 3208 428 250 43 43 chr1 3269643 3269807 -239394546 - L1ME3A LINE L1 -36 6134 5971 253 271 0 0 chr1 3269811 3269881 -239394472 - L1ME3A LINE L1 -317 5853 5784 2297 98 10 0 chr1 3269902 3270208 -239394145 - AluY SINE Alu -2 309 1 2004 122 3 35 chr1 3270213 3270524 -239393829 - AluSx SINE Alu -11 301 1 642 238 86 0 chr1 3270527 3270796 -239393557 - L1M4 LINE L1 -2803 3343 3052 1060 116 0 0 chr1 3270798 3270945 -239393408 - AluSx SINE Alu -9 301 155 762 147 0 0 chr1 3270945 3271054 -239393299 - AluSx SINE Alu -204 109 1 419 132 26 13 chr1 3271060 3271158 -239393195 - AluJ/FRAM SINE Alu 0 312 232 2292 94 7 0 chr1 3271188 3271495 -239392858 - AluSp SINE Alu 0 313 5 2152 103 3 3 chr1 3271550 3271842 -239392511 + AluSx SINE Alu 7 298 -14 461 241 0 71 chr1 3271842 3271996 -239392357 - L1M4 LINE L1 -3136 3010 2873 2084 114 3 3 chr1 3271996 3272294 -239392059 + AluSp SINE Alu 1 298 -15 461 241 0 71 chr1 3272294 3272351 -239392002 - L1M4 LINE L1 -3273 2873 2814 1184 131 11 0 chr1 3272354 3272537 -239391816 - AluSq SINE Alu 0 313 129 1417 130 0 5 chr1 3272562 3272777 -239391576 - AluSq SINE Alu -5 308 95 672 172 78 0 chr1 3272778 3272894 -239391459 - AluSq SINE Alu -177 135 11 1362 241 23 10 chr1 3272896 3273290 -239391063 - L1M4 LINE L1 -3303 2843 2445 1720 164 31 0 chr1 3273293 3273585 -239390768 - AluJb SINE Alu -11 301 1 1370 207 24 24 chr1 3273663 3273762 -239390591 + AluJo SINE Alu 17 115 -197 2525 61 0 0 chr1 3273762 3274073 -239390280 - AluY SINE Alu 0 311 1 1370 207 24 24 chr1 3274073 3274268 -239390085 + AluJo SINE Alu 114 311 -1 320 119 0 0 chr1 3274279 3274341 -239390012 + L1MA4 LINE L1 6119 6183 -120 2002 128 3 16 chr1 3274419 3274724 -239389629 - AluSx SINE Alu -11 301 1 1806 263 141 3 chr1 3274755 3275485 -239388868 + HERV16 LTR ERVL 1630 2460 -2536 766 163 0 92 chr1 3275506 3275554 -239388799 - L1MB3 LINE L1 -1 6182 6131 2169 123 0 0 chr1 3275554 3275855 -239388498 + AluSq SINE Alu 1 301 -12 766 163 0 92 chr1 3275855 3275870 -239388483 - L1MB3 LINE L1 -52 6131 6116 1889 160 0 3 chr1 3275870 3276164 -239388189 - AluJo SINE Alu -19 293 1 2577 40 0 0 chr1 3276174 3276477 -239387876 - AluY SINE Alu -8 303 1 766 163 0 92 chr1 3276477 3276640 -239387713 - L1MB3 LINE L1 -76 6107 5966 291 238 0 0 chr1 3276641 3276704 -239387649 + HERV16 LTR ERVL 2469 2531 -2465 303 238 132 17 chr1 3277091 3277218 -239387135 + MER69 DNA AcHobo 2385 2526 0 1970 145 3 0 chr1 3277219 3277509 -239386844 - AluSx SINE Alu -15 297 7 1101 123 0 0 chr1 3277518 3277672 -239386681 - AluSq SINE Alu -157 156 3 2175 100 0 0 chr1 3277706 3278017 -239386336 - AluSg SINE Alu 0 311 1 180 179 0 0 chr1 3278497 3278536 -239385817 + (CA)n Simple_repeat Simple_repeat 2 40 0 1804 132 28 24 chr1 3278684 3278972 -239385381 + AluJo SINE Alu 1 289 -23 933 168 19 47 chr1 3278975 3279189 -239385164 + Tigger1 DNA MER2_type 1 208 -2210 2171 110 3 0 chr1 3279533 3279834 -239384519 - AluSx SINE Alu -10 302 1 190 319 154 0 chr1 3280805 3280896 -239383457 - L2 LINE L2 -17 3255 3151 2118 89 32 0 chr1 3281359 3281640 -239382713 - AluSx SINE Alu -22 290 1 246 260 14 0 chr1 3282660 3282733 -239381620 + G-rich Low_complexity Low_complexity 2 75 0 180 0 0 0 chr1 3283716 3283736 -239380617 + (CCCCG)n Simple_repeat Simple_repeat 2 21 0 197 400 0 0 chr1 3284161 3284266 -239380087 - MIR SINE MIR -74 134 30 231 344 0 21 chr1 3284916 3285012 -239379341 - MIR SINE MIR -11 251 158 344 266 64 138 chr1 3285818 3285876 -239378477 + MIR SINE MIR 64 125 -137 2054 119 0 42 chr1 3285876 3286186 -239378167 + AluSq SINE Alu 1 297 -16 2474 74 3 0 chr1 3286188 3286498 -239377855 + AluY SINE Alu 1 311 0 344 266 64 138 chr1 3286498 3286639 -239377714 + MIR SINE MIR 126 251 -11 241 260 0 27 chr1 3288078 3288151 -239376202 + L2 LINE L2 2905 2975 -339 21 36 0 0 chr1 3288420 3288448 -239375905 + GC_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr1 3288464 3288490 -239375863 + (CGGGG)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chr1 3288886 3288916 -239375437 + GC_rich Low_complexity Low_complexity 1 30 0 373 278 157 15 chr1 3289585 3289852 -239374501 - L2 LINE L2 -267 3046 2740 216 0 0 0 chr1 3292851 3292875 -239371478 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 1373 92 5 0 chr1 3294370 3294555 -239369798 + AluSp SINE Alu 125 310 -3 2152 97 6 67 chr1 3295083 3295467 -239368886 + AluSx SINE Alu 1 364 0 205 250 33 0 chr1 3295509 3295569 -239368784 - MIR SINE MIR -71 191 130 489 236 36 0 chr1 3295570 3295680 -239368673 - L2 LINE L2 -4 3268 3155 221 231 0 62 chr1 3295713 3295778 -239368575 + MIR SINE MIR 62 122 -86 2325 91 0 3 chr1 3296598 3296906 -239367447 + AluSg SINE Alu 2 308 -2 2112 126 0 3 chr1 3296919 3297213 -239367140 + AluSg SINE Alu 1 293 -17 1128 148 0 0 chr1 3297214 3297383 -239366970 + AluSg/x SINE Alu 134 302 -10 265 261 185 23 chr1 3297456 3297660 -239366693 + L2 LINE L2 2887 3118 -195 2090 87 21 10 chr1 3297671 3297959 -239366394 - AluSx SINE Alu -21 291 1 188 291 89 25 chr1 3298219 3298298 -239366055 + MIR SINE MIR 36 119 -89 181 332 138 37 chr1 3298499 3298767 -239365586 - L2 LINE L2 -145 3168 2874 183 309 140 51 chr1 3299575 3299753 -239364600 - MIR SINE MIR -18 244 51 623 320 104 0 chr1 3299954 3300176 -239364177 + MIR SINE MIR 17 261 -1 1597 173 0 7 chr1 3300232 3300546 -239363807 - AluJo SINE Alu 0 312 18 180 243 0 0 chr1 3300869 3300906 -239363447 - MIR SINE MIR -8 254 218 209 352 63 42 chr1 3302067 3302209 -239362144 - MIR SINE MIR -18 244 100 193 211 115 0 chr1 3302383 3302435 -239361918 + MIR SINE MIR 68 125 -137 2182 128 0 0 chr1 3302586 3302892 -239361461 + AluSx SINE Alu 1 306 -6 496 209 58 68 chr1 3302960 3303151 -239361202 + MER53 DNA DNA 1 189 0 200 298 58 87 chr1 3303157 3303365 -239360988 - L2 LINE L2 -95 3177 2976 2211 70 18 3 chr1 3303491 3303775 -239360578 + AluSg SINE Alu 3 290 -20 306 215 16 33 chr1 3304205 3304326 -239360027 + (CGGGG)n Simple_repeat Simple_repeat 2 120 0 22 35 0 0 chr1 3304569 3304598 -239359755 + GC_rich Low_complexity Low_complexity 1 29 0 206 253 32 0 chr1 3304870 3304934 -239359419 - MIR SINE MIR -63 145 103 267 285 277 13 chr1 3305630 3305865 -239358488 + L3 LINE CR1 1280 1576 -1 203 368 23 0 chr1 3305942 3306029 -239358324 - MIR SINE MIR -1 261 173 2237 87 0 17 chr1 3306045 3306344 -239358009 + AluSc SINE Alu 1 294 -15 2406 73 0 3 chr1 3306344 3306645 -239357708 + AluSc SINE Alu 1 300 -9 2035 106 34 10 chr1 3306653 3306945 -239357408 + AluSq SINE Alu 1 299 -14 347 262 78 30 chr1 3306980 3307119 -239357234 - MIR SINE MIR -34 174 31 262 214 274 8 chr1 3308062 3308179 -239356174 - MIR3 SINE MIR -16 192 45 183 80 0 0 chr1 3308852 3308877 -239355476 + (CA)n Simple_repeat Simple_repeat 1 25 0 264 221 39 0 chr1 3309509 3309586 -239354767 + C-rich Low_complexity Low_complexity 5 84 0 23 0 0 0 chr1 3311069 3311092 -239353261 + GC_rich Low_complexity Low_complexity 1 23 0 211 256 12 12 chr1 3312565 3312647 -239351706 + (CCCG)n Simple_repeat Simple_repeat 4 85 0 210 150 0 0 chr1 3312714 3312754 -239351599 + (CCG)n Simple_repeat Simple_repeat 1 40 0 208 200 46 0 chr1 3313079 3313144 -239351209 + MIR SINE MIR 55 122 -86 221 294 0 33 chr1 3314072 3314164 -239350189 + CT-rich Low_complexity Low_complexity 2 90 0 1694 83 0 13 chr1 3315950 3316180 -239348173 - AluSg/x SINE Alu -1 309 83 430 151 32 32 chr1 3316365 3316458 -239347895 - MER5A DNA MER1_type -83 106 14 217 183 24 122 chr1 3317428 3317510 -239346843 - MIR SINE MIR -73 135 62 198 234 169 13 chr1 3318376 3318453 -239345900 - MIR SINE MIR -170 92 4 465 297 65 19 chr1 3318809 3318964 -239345389 + MIR SINE MIR 11 172 -90 203 270 149 0 chr1 3320783 3320857 -239343496 + MIR SINE MIR 59 143 -65 243 266 16 0 chr1 3321218 3321282 -239343071 + (CA)n Simple_repeat Simple_repeat 2 66 0 359 237 93 10 chr1 3321532 3321629 -239342724 + MIR SINE MIR 41 145 -63 23 33 0 0 chr1 3321954 3321984 -239342369 + GC_rich Low_complexity Low_complexity 1 30 0 227 293 0 0 chr1 3322135 3322217 -239342136 + CT-rich Low_complexity Low_complexity 3 84 0 195 42 0 0 chr1 3322734 3322758 -239341595 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 1109 152 18 4 chr1 3322767 3323749 -239340604 + (TGGA)n Simple_repeat Simple_repeat 1 995 0 200 170 43 21 chr1 3323753 3323800 -239340553 + GA-rich Low_complexity Low_complexity 4 51 0 326 370 110 37 chr1 3324501 3324828 -239339525 + L2 LINE L2 2917 3267 -5 313 270 14 0 chr1 3325319 3325393 -239338960 - MIR3 SINE MIR -20 188 114 195 220 0 0 chr1 3325501 3325551 -239338802 + (CA)n Simple_repeat Simple_repeat 2 51 0 313 326 36 22 chr1 3325735 3325873 -239338480 - MIR SINE MIR -65 197 58 2122 82 0 7 chr1 3326686 3326967 -239337386 + AluSx SINE Alu 1 279 -33 261 0 0 0 chr1 3326967 3326996 -239337357 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 192 125 0 0 chr1 3327897 3327929 -239336424 + (CCG)n Simple_repeat Simple_repeat 3 34 0 2180 118 3 0 chr1 3329394 3329698 -239334655 + AluSx SINE Alu 1 305 -7 510 260 164 11 chr1 3330050 3330227 -239334126 + MIR SINE MIR 51 254 -8 236 235 94 0 chr1 3331094 3331179 -239333174 + MER113 DNA MER1_type? 10 102 -419 496 200 157 0 chr1 3331668 3331783 -239332570 + FLAM_A SINE Alu 1 133 -9 2129 72 11 18 chr1 3331785 3331865 -239332488 + AluSc SINE Alu 1 80 -229 2716 16 0 0 chr1 3331865 3332170 -239332183 + AluYa5 SINE Alu 1 305 -6 2129 72 11 18 chr1 3332170 3332367 -239331986 + AluSc SINE Alu 80 276 -33 288 0 0 0 chr1 3332367 3332399 -239331954 + (CA)n Simple_repeat Simple_repeat 1 32 0 239 284 0 12 chr1 3332497 3332578 -239331775 + CT-rich Low_complexity Low_complexity 1 80 0 260 330 0 22 chr1 3334240 3334331 -239330022 + GA-rich Low_complexity Low_complexity 2 90 0 290 253 55 55 chr1 3335085 3335195 -239329158 + MIR SINE MIR 39 147 -63 2227 107 3 16 chr1 3335239 3335556 -239328797 + AluSp SINE Alu 1 313 0 255 304 0 39 chr1 3337974 3338076 -239326277 + GA-rich Low_complexity Low_complexity 4 101 0 204 252 48 19 chr1 3338117 3338220 -239326133 + (CAGAGA)n Simple_repeat Simple_repeat 1 106 0 248 269 39 62 chr1 3339897 3340027 -239324326 + L2 LINE L2 2649 2775 -539 390 318 60 7 chr1 3340380 3340531 -239323822 + MIR SINE MIR 34 192 -70 226 287 50 69 chr1 3340622 3340723 -239323630 + MIR SINE MIR 118 216 -46 2138 126 7 0 chr1 3341877 3342186 -239322167 + AluSx SINE Alu 2 312 0 237 200 33 33 chr1 3343230 3343290 -239321063 - MIR SINE MIR -164 98 39 207 0 0 0 chr1 3345469 3345492 -239318861 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 770 173 87 7 chr1 3345494 3345644 -239318709 - AluJb SINE Alu -30 282 121 280 264 27 73 chr1 3345644 3345754 -239318599 - MIR SINE MIR -115 147 43 2524 50 0 0 chr1 3346241 3346543 -239317810 - AluY SINE Alu -9 302 1 283 309 73 8 chr1 3346678 3346801 -239317552 + MIR SINE MIR 95 225 -37 234 301 0 72 chr1 3347207 3347400 -239316953 + GA-rich Low_complexity Low_complexity 1 179 0 * 269 236 0 28 chr1 3347355 3347427 -239316926 + (CAGAGA)n Simple_repeat Simple_repeat 5 74 0 989 103 44 12 chr1 3347502 3348588 -239315765 + (TGGA)n Simple_repeat Simple_repeat 1 1120 0 716 127 42 0 chr1 3348599 3348764 -239315589 + (TGGA)n Simple_repeat Simple_repeat 4 175 0 439 231 18 0 chr1 3348821 3348990 -239315363 + (TGGA)n Simple_repeat Simple_repeat 4 175 0 226 204 59 13 chr1 3349013 3349165 -239315188 + (TGGA)n Simple_repeat Simple_repeat 4 162 0 591 290 55 19 chr1 3349786 3350022 -239314331 - MIR SINE MIR -6 256 10 750 180 0 0 chr1 3350658 3350780 -239313573 + FLAM_A SINE Alu 5 126 -7 377 270 157 36 chr1 3350840 3351242 -239313111 - L2 LINE L2 -283 3030 2495 29 90 0 0 chr1 3352778 3352856 -239311497 + GC_rich Low_complexity Low_complexity 1 78 0 40 59 0 0 chr1 3352984 3353052 -239311301 + GC_rich Low_complexity Low_complexity 1 68 0 1962 81 23 55 chr1 3355197 3355507 -239308846 - AluSc SINE Alu -9 300 1 2224 78 7 20 chr1 3355784 3356090 -239308263 + AluSx SINE Alu 1 302 -10 2129 117 7 0 chr1 3360171 3360469 -239303884 + AluSx SINE Alu 7 306 -6 2147 123 0 0 chr1 3360472 3360782 -239303571 + AluY SINE Alu 1 310 -1 1495 164 95 4 chr1 3361197 3361471 -239302882 - AluSx SINE Alu -13 299 1 891 135 0 0 chr1 3361547 3361673 -239302680 + AluJo SINE Alu 1 126 -186 26 0 0 0 chr1 3361673 3361699 -239302654 + AT_rich Low_complexity Low_complexity 1 26 0 2272 51 20 7 chr1 3361932 3362224 -239302129 - AluSp SINE Alu -16 297 2 925 165 24 0 chr1 3362554 3362718 -239301635 + AluJo SINE Alu 135 302 -10 2219 98 0 3 chr1 3362777 3363082 -239301271 + AluSq SINE Alu 1 304 -9 2049 87 7 0 chr1 3363515 3363792 -239300561 - AluSp SINE Alu -8 305 27 985 118 0 40 chr1 3364080 3364217 -239300136 + AluSq/x SINE Alu 1 142 -170 2318 78 3 10 chr1 3364217 3364525 -239299828 + AluSg SINE Alu 1 306 -4 2470 50 0 25 chr1 3364525 3364842 -239299511 + AluY SINE Alu 1 309 -2 985 118 0 40 chr1 3364842 3364855 -239299498 + AluSq/x SINE Alu 140 146 -166 2147 120 0 3 chr1 3364855 3365155 -239299198 + AluSx SINE Alu 1 299 -13 1729 176 14 3 chr1 3365190 3365486 -239298867 - AluJo SINE Alu -13 299 1 2053 121 0 3 chr1 3365555 3365852 -239298501 + AluSx SINE Alu 1 296 -16 1206 202 39 62 chr1 3366285 3366463 -239297890 - AluJb SINE Alu -2 300 130 2288 74 7 0 chr1 3366463 3366762 -239297591 - AluSp SINE Alu -12 301 1 1206 202 39 62 chr1 3366762 3366890 -239297463 - AluJb SINE Alu -172 130 1 1952 123 7 0 chr1 3367081 3367366 -239296987 + AluJb SINE Alu 19 305 -7 181 271 125 88 chr1 3367524 3367716 -239296637 + MIR3 SINE MIR 9 207 -1 1671 183 21 3 chr1 3367744 3368033 -239296320 + AluJo SINE Alu 1 294 -18 1995 91 4 0 chr1 3368033 3368298 -239296055 + AluY SINE Alu 38 303 -8 2333 80 0 7 chr1 3368303 3368604 -239295749 + AluY SINE Alu 1 299 -12 2018 147 3 6 chr1 3368607 3368919 -239295434 + AluSx SINE Alu 1 311 -1 2205 119 0 0 chr1 3368920 3369232 -239295121 + AluSp SINE Alu 1 312 -1 2141 107 0 7 chr1 3370169 3370469 -239293884 - AluSg SINE Alu -12 298 1 227 282 94 0 chr1 3373167 3373252 -239291101 + L2 LINE L2 491 583 -2731 205 300 0 0 chr1 3373255 3373325 -239291028 + L2 LINE L2 853 922 -2392 431 262 29 0 chr1 3373365 3373468 -239290885 - MER5A DNA MER1_type -80 109 4 243 291 55 27 chr1 3373535 3373645 -239290708 + L2 LINE L2 1008 1120 -2194 743 184 209 8 chr1 3373705 3374213 -239290140 + LTR50 LTR ERVL 29 793 -2 227 331 117 7 chr1 3374213 3374280 -239290073 + L2 LINE L2 1230 1288 -2026 1046 182 0 0 chr1 3374280 3374445 -239289908 - FRAM SINE Alu -1 165 1 227 331 117 7 chr1 3374445 3374531 -239289822 + L2 LINE L2 1288 1400 -1914 1832 148 9 28 chr1 3374532 3374717 -239289636 - AluJo SINE Alu 0 312 134 180 0 0 0 chr1 3374717 3374737 -239289616 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1832 148 9 28 chr1 3374737 3374869 -239289484 - AluJo SINE Alu -178 134 1 200 159 23 45 chr1 3375066 3375154 -239289199 + C-rich Low_complexity Low_complexity 1 86 0 225 283 100 29 chr1 3375154 3375304 -239289049 + L2 LINE L2 2817 2985 -287 1871 160 3 7 chr1 3375304 3375610 -239288743 - AluJo SINE Alu -7 305 1 225 283 100 29 chr1 3375610 3375666 -239288687 + L2 LINE L2 2985 3036 -236 1577 103 117 72 chr1 3375734 3375888 -239288465 - AluSx SINE Alu -9 303 157 2291 94 0 7 chr1 3375888 3376197 -239288156 - AluSg SINE Alu -3 307 1 1577 103 117 72 chr1 3376197 3376332 -239288021 - AluSx SINE Alu -155 157 1 183 275 0 0 chr1 3376432 3376472 -239287881 + L2 LINE L2 3271 3310 -3 205 282 0 24 chr1 3376586 3376671 -239287682 + MIR SINE MIR 150 232 -30 2451 62 3 0 chr1 3376713 3377017 -239287336 + AluSp SINE Alu 1 305 -8 2347 57 10 3 chr1 3377116 3377412 -239286941 + AluY SINE Alu 1 298 -13 698 152 0 9 chr1 3377518 3377630 -239286723 + FLAM_C SINE Alu 1 111 -32 186 71 0 0 chr1 3377668 3377696 -239286657 + (A)n Simple_repeat Simple_repeat 1 28 0 1570 130 123 4 chr1 3377696 3377965 -239286388 + AluJb SINE Alu 1 301 -11 283 253 72 0 chr1 3378381 3378464 -239285889 - MIR SINE MIR -84 124 36 1987 66 80 0 chr1 3378616 3378890 -239285463 - AluSx SINE Alu -16 296 1 226 297 10 40 chr1 3380043 3380144 -239284209 - MIR SINE MIR -65 143 46 203 247 136 25 chr1 3380801 3380882 -239283471 - MIR SINE MIR -62 146 57 2037 89 43 0 chr1 3381465 3381746 -239282607 - AluSx SINE Alu -19 293 1 216 180 0 40 chr1 3381813 3381863 -239282490 + MIR SINE MIR 101 148 -114 24 0 0 0 chr1 3382499 3382523 -239281830 + GC_rich Low_complexity Low_complexity 1 24 0 269 262 80 91 chr1 3382721 3382908 -239281445 - L2 LINE L2 -73 3199 3015 196 260 62 73 chr1 3384795 3384891 -239279462 - MER5B DNA MER1_type -62 116 22 1450 107 0 0 chr1 3386378 3386575 -239277778 + AluSx SINE Alu 1 197 -115 305 98 0 0 chr1 3386577 3386628 -239277725 + AluSx SINE Alu 252 302 0 1429 228 89 48 chr1 3387125 3387538 -239276815 - HAL1 LINE L1 -787 1720 1326 1647 96 0 0 chr1 3387538 3387758 -239276595 - AluSg/x SINE Alu -8 304 85 2135 99 26 7 chr1 3387763 3388066 -239276287 - AluSc SINE Alu 0 309 1 1429 228 89 48 chr1 3388066 3388151 -239276202 - HAL1 LINE L1 -1184 1323 1195 2254 103 6 0 chr1 3388156 3388467 -239275886 - AluSp SINE Alu 0 313 1 896 134 0 8 chr1 3388472 3388606 -239275747 - FLAM_C SINE Alu 0 133 1 365 216 126 32 chr1 3388613 3388803 -239275550 - HAL1 LINE L1 -1398 1109 902 1055 96 13 13 chr1 3388807 3388963 -239275390 - AluSg/x SINE Alu -17 293 138 471 237 7 65 chr1 3388968 3389107 -239275246 - HAL1 LINE L1 -1605 902 772 1078 294 123 24 chr1 3389558 3389700 -239274653 + L2 LINE L2 1828 1955 -1359 2268 62 0 33 chr1 3389700 3390007 -239274346 - AluSc SINE Alu -12 297 1 1812 164 17 0 chr1 3390007 3390304 -239274049 - AluJb SINE Alu -9 303 1 1078 294 123 24 chr1 3390304 3390860 -239273493 + L2 LINE L2 1954 2596 -718 206 297 54 0 chr1 3390988 3391062 -239273291 + L2 LINE L2 2862 2939 -333 2341 76 3 3 chr1 3392629 3392933 -239271420 - AluSq SINE Alu -9 304 1 2192 93 0 10 chr1 3392937 3393237 -239271116 - AluSp SINE Alu -16 297 1 2201 72 7 30 chr1 3395278 3395583 -239268770 + AluSx SINE Alu 1 298 -14 2214 104 0 3 chr1 3396238 3396546 -239267807 - AluSg SINE Alu -3 307 1 429 340 63 0 chr1 3396776 3396935 -239267418 - MIR SINE MIR -44 218 50 1424 158 22 0 chr1 3399002 3399224 -239265129 - AluJb SINE Alu -15 297 71 2033 118 7 3 chr1 3399252 3399548 -239264805 + AluSx SINE Alu 1 297 -15 455 288 107 42 chr1 3399764 3399884 -239264469 - MIR SINE MIR -15 247 136 781 200 0 0 chr1 3399884 3400014 -239264339 - FLAM_A SINE Alu -3 130 1 455 288 107 42 chr1 3400014 3400108 -239264245 - MIR SINE MIR -126 136 19 229 302 203 0 chr1 3400156 3400348 -239264005 - MER112 DNA MER1_type -22 238 8 2471 66 0 3 chr1 3400713 3401018 -239263335 + AluY SINE Alu 1 304 -7 1227 206 14 0 chr1 3401025 3401243 -239263110 + AluJo SINE Alu 1 221 -91 998 162 134 69 chr1 3401291 3401478 -239262875 - AluJo SINE Alu -13 299 91 2405 82 0 0 chr1 3401478 3401781 -239262572 - AluY SINE Alu -8 303 1 998 162 134 69 chr1 3401781 3401840 -239262513 - AluJo SINE Alu -221 91 37 2132 112 0 19 chr1 3401884 3402198 -239262155 + AluSx SINE Alu 1 308 -4 1605 141 4 38 chr1 3402203 3402336 -239262017 + AluSx SINE Alu 9 130 -182 2279 99 3 6 chr1 3402336 3402649 -239261704 + AluSp SINE Alu 1 312 -1 1605 141 4 38 chr1 3402649 3402777 -239261576 + AluSx SINE Alu 130 261 -51 687 172 41 41 chr1 3402777 3402922 -239261431 + AluJb SINE Alu 168 312 0 369 0 0 0 chr1 3402923 3402964 -239261389 + (CA)n Simple_repeat Simple_repeat 2 42 0 918 162 0 0 chr1 3403003 3403151 -239261202 - AluSg/x SINE Alu -8 304 157 1613 125 3 80 chr1 3403161 3403258 -239261095 + AluJb SINE Alu 18 121 -191 1916 149 0 0 chr1 3403258 3403534 -239260819 - AluSx SINE Alu -16 296 21 1613 125 3 80 chr1 3403534 3403747 -239260606 + AluJb SINE Alu 121 304 -8 2227 96 0 26 chr1 3403747 3404059 -239260294 + AluY SINE Alu 1 304 -7 1292 196 117 7 chr1 3404059 3404340 -239260013 + AluJo SINE Alu 1 312 0 802 171 0 14 chr1 3404569 3404709 -239259644 + FLAM_C SINE Alu 6 143 0 331 216 41 0 chr1 3404907 3405004 -239259349 + L1MB7 LINE L1 6084 6184 0 2141 116 3 0 chr1 3405694 3405987 -239258366 - AluSq SINE Alu -19 294 1 2320 65 7 3 chr1 3405999 3406293 -239258060 - AluSg SINE Alu -15 295 1 1956 90 0 97 chr1 3406973 3407313 -239257040 - AluSg SINE Alu 0 310 2 540 277 106 0 chr1 3408239 3408406 -239255947 + MIR SINE MIR 35 217 -45 41 0 0 0 chr1 3408810 3408851 -239255502 + GC_rich Low_complexity Low_complexity 1 41 0 21 100 0 0 chr1 3409018 3409088 -239255265 + GC_rich Low_complexity Low_complexity 1 70 0 23 33 0 0 chr1 3409234 3409264 -239255089 + GC_rich Low_complexity Low_complexity 1 30 0 2221 85 0 3 chr1 3409407 3409701 -239254652 + AluSx SINE Alu 1 293 -19 2315 48 17 3 chr1 3409924 3410216 -239254137 - AluY SINE Alu -15 296 1 737 156 14 71 chr1 3410366 3410507 -239253846 - FLAM_C SINE Alu 0 133 1 273 173 55 100 chr1 3410507 3410595 -239253758 + L1ME4a LINE L1 6008 6092 -29 2275 78 3 7 chr1 3410595 3410890 -239253463 - AluSq SINE Alu -19 294 1 273 173 55 100 chr1 3410890 3410911 -239253442 + L1ME4a LINE L1 6092 6112 -9 254 239 115 53 chr1 3411385 3411498 -239252855 + MIR SINE MIR 28 147 -115 1147 142 0 0 chr1 3411549 3411725 -239252628 - FRAM SINE Alu -1 175 1 2393 90 0 0 chr1 3412862 3413172 -239251181 - AluSg SINE Alu 0 310 1 258 32 0 0 chr1 3413999 3414030 -239250323 + (T)n Simple_repeat Simple_repeat 1 31 0 28 29 0 0 chr1 3415513 3415548 -239248805 + GC_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr1 3415595 3415625 -239248728 + GC_rich Low_complexity Low_complexity 1 30 0 297 154 0 0 chr1 3417855 3417907 -239246446 + FLAM_A SINE Alu 56 107 -26 527 120 0 43 chr1 3418104 3418221 -239246132 + (TCCCC)n Simple_repeat Simple_repeat 2 113 0 21 0 0 0 chr1 3418470 3418491 -239245862 + GC_rich Low_complexity Low_complexity 1 21 0 204 266 65 0 chr1 3421857 3421930 -239242423 - MIR3 SINE MIR -23 185 107 27 29 0 0 chr1 3422561 3422595 -239241758 + GC_rich Low_complexity Low_complexity 1 34 0 213 259 19 44 chr1 3422719 3422877 -239241476 + G-rich Low_complexity Low_complexity 1 154 0 360 244 136 29 chr1 3423876 3424083 -239240270 + MIR SINE MIR 3 241 -21 889 176 13 0 chr1 3424947 3425100 -239239253 - FRAM SINE Alu -22 154 1 225 239 30 60 chr1 3425103 3425170 -239239183 - MIR SINE MIR -115 147 83 395 336 14 2 chr1 3425296 3425435 -239238918 + MIR SINE MIR 31 172 -63 2101 113 3 25 chr1 3426249 3426569 -239237784 + AluSq SINE Alu 1 313 0 411 273 81 9 chr1 3426647 3426795 -239237558 + MIR SINE MIR 46 202 -37 238 111 89 0 chr1 3428243 3428288 -239236065 + MLT1A1 LTR MaLR 2 50 -378 2197 69 4 0 chr1 3428341 3428615 -239235738 - AluY SINE Alu -15 296 22 1689 155 3 46 chr1 3428624 3428782 -239235571 - AluJo SINE Alu -22 290 150 2244 107 3 3 chr1 3428782 3429090 -239235263 - AluSg SINE Alu -2 308 1 1689 155 3 46 chr1 3429090 3429234 -239235119 - AluJo SINE Alu -162 150 1 347 274 11 11 chr1 3429364 3429459 -239234894 + MLT1A1 LTR MaLR 185 279 -86 2010 127 10 16 chr1 3429495 3429809 -239234544 - AluSx SINE Alu 0 312 1 820 174 0 8 chr1 3429809 3429941 -239234412 - FLAM_A SINE Alu -2 131 1 229 250 44 0 chr1 3429946 3430014 -239234339 + MLT1A1 LTR MaLR 386 456 -1 2163 77 49 3 chr1 3431282 3431568 -239232785 - AluSq SINE Alu -14 299 1 1835 163 0 3 chr1 3432118 3432412 -239231941 + AluJb SINE Alu 1 293 -19 277 341 78 8 chr1 3432488 3432617 -239231736 - MIR SINE MIR -113 149 12 40 123 0 0 chr1 3434025 3434317 -239230036 + GC_rich Low_complexity Low_complexity 1 292 0 237 146 0 0 chr1 3434329 3434377 -239229976 + (TCCG)n Simple_repeat Simple_repeat 4 51 0 181 245 20 0 chr1 3434597 3434646 -239229707 - L2 LINE L2 -208 3064 3015 234 217 33 0 chr1 3434930 3434990 -239229363 + CT-rich Low_complexity Low_complexity 1 62 0 223 185 93 0 chr1 3436001 3436055 -239228298 - MIR SINE MIR -164 98 40 298 219 0 14 chr1 3438683 3438756 -239225597 - MER94 DNA DNA -19 115 44 410 239 246 0 chr1 3439557 3439699 -239224654 - MER5A DNA MER1_type 0 189 13 249 33 0 0 chr1 3440601 3440631 -239223722 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 190 298 123 0 chr1 3441019 3441076 -239223277 + MIR SINE MIR 126 189 -73 934 241 92 3 chr1 3441106 3441401 -239222952 + L1MB8 LINE L1 5858 6178 0 514 234 27 24 chr1 3442210 3442373 -239221980 - MIR SINE MIR -67 141 25 232 207 17 35 chr1 3445331 3445375 -239218978 + L2 LINE L2 3215 3259 -13 237 65 0 0 chr1 3445375 3445406 -239218947 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 232 207 17 35 chr1 3445406 3445419 -239218934 + L2 LINE L2 3259 3271 -1 2157 89 48 0 chr1 3448590 3448883 -239215470 + AluSg SINE Alu 1 307 -3 293 305 109 56 chr1 3450648 3451005 -239213348 + L2 LINE L2 2842 3217 -96 469 257 71 0 chr1 3451034 3451174 -239213179 - MIR SINE MIR -78 184 35 192 286 198 0 chr1 3451269 3451395 -239212958 - L2 LINE L2 -251 3062 2912 181 308 33 0 chr1 3452729 3452820 -239211533 + L2 LINE L2 2963 3056 -216 207 329 130 49 chr1 3454634 3454880 -239209473 - L3 LINE CR1 -11 1566 1301 1700 171 7 14 chr1 3456310 3456603 -239207750 - AluSx SINE Alu -19 293 3 1132 153 0 0 chr1 3456981 3457151 -239207202 + AluJb SINE Alu 130 299 -13 2335 94 3 0 chr1 3457434 3457742 -239206611 + AluSq SINE Alu 1 309 -4 367 243 126 10 chr1 3459658 3459761 -239204592 + MIR SINE MIR 25 139 -123 1138 58 0 0 chr1 3460088 3460225 -239204128 - AluY SINE Alu -174 137 1 422 367 58 22 chr1 3460426 3460652 -239203701 + MIR SINE MIR 1 234 -28 2420 77 0 0 chr1 3462227 3462539 -239201814 - AluSx SINE Alu 0 312 1 1516 136 107 18 chr1 3462541 3462813 -239201540 - AluJb SINE Alu -16 296 1 663 191 8 46 chr1 3462816 3462967 -239201386 - FLAM_A SINE Alu 0 133 2 1284 239 156 5 chr1 3463033 3463464 -239200889 + MLT1D LTR MaLR 7 502 -3 875 261 52 41 chr1 3464307 3464671 -239199682 + MLT1C LTR MaLR 59 426 -41 1112 135 5 16 chr1 3465806 3465999 -239198354 - AluSg/x SINE Alu 0 310 120 2499 65 0 0 chr1 3466019 3466328 -239198025 - AluY SINE Alu -2 309 1 972 218 0 35 chr1 3466651 3466853 -239197500 + AluJo SINE Alu 101 295 -17 2416 216 68 27 chr1 3468411 3469046 -239195307 + L1MB8 LINE L1 5452 6119 -59 1587 171 42 3 chr1 3469046 3469332 -239195021 - AluJo SINE Alu -15 297 1 2416 216 68 27 chr1 3469332 3469390 -239194963 + L1MB8 LINE L1 6119 6173 -5 2286 93 0 3 chr1 3469560 3469862 -239194491 - AluSg SINE Alu -9 301 1 832 153 0 36 chr1 3469878 3470015 -239194338 - FLAM_C SINE Alu 0 133 2 343 238 0 0 chr1 3470051 3470131 -239194222 + MER116 DNA Mariner 1 80 0 2073 123 3 0 chr1 3470185 3470477 -239193876 - AluSx SINE Alu -19 293 1 271 319 93 24 chr1 3470707 3471038 -239193315 + L1MC5 LINE L1 7516 7901 -60 2151 121 0 0 chr1 3471275 3471572 -239192781 - AluSx SINE Alu -13 299 3 241 376 31 25 chr1 3472218 3472380 -239191973 + MIR SINE MIR 41 203 -59 180 0 0 0 chr1 3472780 3472800 -239191553 + (GA)n Simple_repeat Simple_repeat 2 21 0 257 106 0 21 chr1 3472805 3472852 -239191501 + (TG)n Simple_repeat Simple_repeat 2 47 0 252 319 96 24 chr1 3474004 3474170 -239190183 - MIR SINE MIR -84 178 1 192 250 171 0 chr1 3474677 3474753 -239189600 + L2 LINE L2 3170 3258 -14 204 67 0 0 chr1 3474754 3474784 -239189569 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 283 342 114 63 chr1 3475068 3475592 -239188761 + L3 LINE CR1 913 1463 -114 240 111 0 0 chr1 3477457 3477493 -239186860 + (A)n Simple_repeat Simple_repeat 1 36 0 9376 15 3 251 chr1 3477533 3479376 -239184977 - SVA Other Other 0 1386 1 185 256 116 35 chr1 3480275 3480361 -239183992 + L2 LINE L2 3172 3264 -8 319 219 134 0 chr1 3480492 3480574 -239183779 - L2 LINE L2 -1 3271 3179 462 298 77 80 chr1 3482566 3482918 -239181435 - L1M4 LINE L1 -3021 3125 2775 1468 226 72 88 chr1 3482955 3483320 -239181033 - L1M4 LINE L1 -2406 3740 3371 1775 170 83 9 chr1 3483320 3483644 -239180709 + MER7A DNA MER2_type 1 346 0 1468 226 72 88 chr1 3483644 3484351 -239180002 - L1M4 LINE L1 -2775 3371 2486 1380 181 27 4 chr1 3484355 3484830 -239179523 + MER68 LTR ERV1 3 562 0 652 271 46 8 chr1 3484831 3485071 -239179282 - L1M4 LINE L1 -3688 2458 2210 609 265 62 65 chr1 3485091 3485362 -239178991 + L1MC4a LINE L1 5613 5884 -1924 1969 125 7 7 chr1 3485362 3485659 -239178694 + AluSx SINE Alu 2 298 -14 609 265 62 65 chr1 3485659 3485742 -239178611 + L1MC4a LINE L1 5884 5966 -1842 338 256 35 0 chr1 3486056 3486142 -239178211 + MIR SINE MIR 128 216 -46 199 242 0 76 chr1 3486166 3486232 -239178121 + L2 LINE L2 3206 3266 -6 1480 182 163 0 chr1 3486879 3487192 -239177161 - MER47A DNA MER2_type 0 366 3 255 312 91 0 chr1 3487935 3488012 -239176341 + MER91A DNA MER1_type 2 85 -111 422 311 99 0 chr1 3488454 3488615 -239175738 + Charlie1a DNA MER1_type 1 177 -1278 4315 204 89 3 chr1 3488658 3489771 -239174582 + Charlie1a DNA MER1_type 241 1449 -6 435 207 9 17 chr1 3490325 3490441 -239173912 + MLT1D LTR MaLR 391 505 0 183 229 0 21 chr1 3490481 3490529 -239173824 + L2 LINE L2 3016 3062 -210 430 285 115 6 chr1 3491579 3491744 -239172609 - MIR SINE MIR -3 259 77 208 341 159 0 chr1 3492303 3492435 -239171918 - L2 LINE L2 0 3313 3161 406 213 131 0 chr1 3492522 3492644 -239171709 + Charlie1 DNA MER1_type 2337 2474 -287 285 254 14 51 chr1 3494005 3494195 -239170158 + CT-rich Low_complexity Low_complexity 1 183 0 198 333 36 63 chr1 3496398 3496509 -239167844 - MIR3 SINE MIR -86 122 15 206 283 17 0 chr1 3496881 3496941 -239167412 - MIR SINE MIR -129 133 73 187 335 58 48 chr1 3499137 3499343 -239165010 - L2 LINE L2 -235 3037 2830 247 300 80 0 chr1 3499906 3500006 -239164347 - MIR SINE MIR -113 149 42 192 77 0 0 chr1 3501758 3501784 -239162569 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 377 66 16 0 chr1 3502405 3502466 -239161887 + (CA)n Simple_repeat Simple_repeat 1 62 0 248 278 0 0 chr1 3502939 3502993 -239161360 - MIR3 SINE MIR -38 170 117 218 303 115 8 chr1 3503056 3503178 -239161175 + L2 LINE L2 3078 3212 -60 191 318 0 30 chr1 3504118 3504184 -239160169 - MIR SINE MIR -108 100 37 350 359 139 40 chr1 3504629 3504930 -239159423 - L1MC/D LINE L1 -2029 5779 5449 799 197 0 0 chr1 3505336 3505468 -239158885 - FLAM_A SINE Alu -1 132 1 1256 214 101 34 chr1 3505511 3505918 -239158435 - MLT1C LTR MaLR -30 437 4 258 250 29 57 chr1 3506039 3506179 -239158174 + G-rich Low_complexity Low_complexity 3 138 0 355 231 33 55 chr1 3506197 3506379 -239157974 + G-rich Low_complexity Low_complexity 3 180 0 329 246 39 50 chr1 3506397 3506576 -239157777 + G-rich Low_complexity Low_complexity 3 179 0 218 206 43 54 chr1 3506999 3507091 -239157262 + C-rich Low_complexity Low_complexity 3 93 0 372 218 58 40 chr1 3507115 3507289 -239157064 + C-rich Low_complexity Low_complexity 3 179 0 386 213 58 40 chr1 3507352 3507526 -239156827 + C-rich Low_complexity Low_complexity 3 179 0 253 254 36 24 chr1 3507458 3507623 -239156730 + (CACTC)n Simple_repeat Simple_repeat 5 171 0 * 350 207 55 43 chr1 3507584 3507748 -239156605 + C-rich Low_complexity Low_complexity 3 168 0 279 168 52 75 chr1 3507666 3507867 -239156486 + (CACCT)n Simple_repeat Simple_repeat 1 196 0 * 2170 87 10 17 chr1 3509447 3509746 -239154607 + AluSx SINE Alu 1 297 -15 200 289 0 0 chr1 3510493 3510538 -239153815 + (TG)n Simple_repeat Simple_repeat 1 45 0 468 289 31 5 chr1 3510907 3510967 -239153386 + MER113 DNA MER1_type? 3 60 -461 2082 135 0 19 chr1 3510967 3511285 -239153068 - AluSx SINE Alu 0 312 1 468 289 31 5 chr1 3511285 3511418 -239152935 + MER113 DNA MER1_type? 60 201 -320 727 194 0 8 chr1 3511424 3511553 -239152800 + FLAM_A SINE Alu 3 130 -3 242 211 0 11 chr1 3513112 3513202 -239151151 + (TGG)n Simple_repeat Simple_repeat 1 89 0 329 225 0 22 chr1 3513217 3513399 -239150954 + (TGG)n Simple_repeat Simple_repeat 2 179 0 397 228 0 11 chr1 3513417 3513597 -239150756 + (TGG)n Simple_repeat Simple_repeat 2 179 0 418 266 3 6 chr1 3513627 3513941 -239150412 + (TGG)n Simple_repeat Simple_repeat 1 313 0 390 359 122 15 chr1 3514264 3514607 -239149746 - L2 LINE L2 -1 3271 2892 272 332 132 18 chr1 3514613 3514947 -239149406 + L2 LINE L2 2305 2676 -638 455 258 27 59 chr1 3515033 3515219 -239149134 + MIR SINE MIR 34 213 -49 2227 113 7 0 chr1 3516128 3516438 -239147915 - AluSx SINE Alu 0 312 1 1123 181 67 0 chr1 3516460 3516670 -239147683 + MER58A DNA MER1_type 1 224 0 213 39 0 0 chr1 3516791 3516817 -239147536 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1945 112 18 7 chr1 3516825 3517110 -239147243 - AluJb SINE Alu -24 288 1 1338 179 64 32 chr1 3518370 3518515 -239145838 - AluJo SINE Alu -23 289 150 297 0 0 0 chr1 3518515 3518548 -239145805 + (TG)n Simple_repeat Simple_repeat 2 34 0 1338 179 64 32 chr1 3518548 3518630 -239145723 - AluJo SINE Alu -162 150 49 2075 85 18 0 chr1 3518630 3518912 -239145441 + AluSx SINE Alu 11 297 -15 1338 179 64 32 chr1 3518912 3518963 -239145390 - AluJo SINE Alu -263 49 1 1374 175 13 89 chr1 3519031 3519345 -239145008 - AluJo SINE Alu -22 290 1 539 223 16 0 chr1 3519346 3519467 -239144886 - MER58B DNA MER1_type -8 333 211 520 113 94 0 chr1 3519471 3519577 -239144776 + MLT1A2 LTR MaLR 1 116 -258 983 126 0 31 chr1 3519577 3519736 -239144617 - AluJb SINE Alu -37 275 122 720 249 64 40 chr1 3519737 3519986 -239144367 + MLT1A2 LTR MaLR 120 374 0 711 194 60 45 chr1 3519993 3520118 -239144235 - MER58B DNA MER1_type -2216 204 73 1793 190 0 0 chr1 3520118 3520429 -239143924 + AluJo SINE Alu 1 311 -1 711 194 60 45 chr1 3520429 3520504 -239143849 - MER58B DNA MER1_type -2347 73 1 269 314 98 36 chr1 3520506 3520700 -239143653 + L3 LINE CR1 1012 1217 -360 415 344 54 42 chr1 3520874 3521133 -239143220 + L3 LINE CR1 1164 1425 -152 2109 98 25 0 chr1 3521765 3522051 -239142302 - AluSx SINE Alu -2 310 18 1764 149 3 17 chr1 3522096 3522384 -239141969 - AluJb SINE Alu -6 306 23 450 134 49 0 chr1 3522521 3522603 -239141750 - L1MB2 LINE L1 0 6171 6086 4385 173 20 7 chr1 3523627 3523983 -239140370 - L1MB3 LINE L1 -55 6128 5778 2210 111 10 0 chr1 3523983 3524290 -239140063 - AluSx SINE Alu -2 310 1 4385 173 20 7 chr1 3524290 3524871 -239139482 - L1MB3 LINE L1 -405 5778 5179 1700 159 9 38 chr1 3524871 3525048 -239139305 - AluJo SINE Alu -1 311 145 2315 86 0 7 chr1 3525048 3525350 -239139003 - AluSq SINE Alu -13 300 1 1700 159 9 38 chr1 3525350 3525492 -239138861 - AluJo SINE Alu -167 145 1 437 286 32 16 chr1 3525925 3526051 -239138302 + MIR3 SINE MIR 14 141 -67 244 354 21 0 chr1 3526834 3526930 -239137423 + MIR SINE MIR 109 206 -56 495 0 0 0 chr1 3528328 3528383 -239135970 + (TG)n Simple_repeat Simple_repeat 1 55 0 293 344 33 8 chr1 3529656 3529778 -239134575 - L2 LINE L2 -1 3312 3188 1881 96 4 15 chr1 3530142 3530412 -239133941 + AluSc SINE Alu 35 301 -8 404 190 41 22 chr1 3530769 3530881 -239133472 - MIR SINE MIR -58 150 46 236 196 0 0 chr1 3531478 3531524 -239132829 - MLT1I LTR MaLR -269 140 95 266 180 16 0 chr1 3531557 3531618 -239132735 + (TG)n Simple_repeat Simple_repeat 2 63 0 324 278 14 0 chr1 3531619 3531691 -239132662 + L1MCa LINE L1 1995 2067 -4359 536 188 8 0 chr1 3531692 3531820 -239132533 + (TG)n Simple_repeat Simple_repeat 2 130 0 301 260 0 39 chr1 3531824 3531901 -239132452 + L1MCa LINE L1 1995 2068 -4358 570 208 0 0 chr1 3531904 3532053 -239132300 + (TG)n Simple_repeat Simple_repeat 1 149 0 262 238 0 0 chr1 3532053 3532116 -239132237 - MLT1H LTR MaLR -458 91 29 249 167 33 50 chr1 3532522 3532582 -239131771 - MIR3 SINE MIR -41 167 109 1767 180 0 7 chr1 3532713 3533018 -239131335 + AluJb SINE Alu 1 303 -9 2160 112 13 0 chr1 3533407 3533780 -239130573 + AluSc SINE Alu 1 377 0 697 311 126 17 chr1 3533787 3534304 -239130049 + L1MC4 LINE L1 7342 7914 -128 661 226 10 0 chr1 3534320 3534624 -239129729 + (TG)n Simple_repeat Simple_repeat 1 307 0 309 236 49 73 chr1 3534651 3534774 -239129579 + L1MC4 LINE L1 7919 8038 -4 180 329 7 79 chr1 3534855 3534995 -239129358 + MIR SINE MIR 10 139 -123 1803 282 169 35 chr1 3535917 3537329 -239127024 - L2 LINE L2 0 3313 1616 2261 107 0 0 chr1 3537329 3537629 -239126724 + AluSx SINE Alu 1 300 -12 1803 282 169 35 chr1 3537629 3537962 -239126391 - L2 LINE L2 -1697 1616 1329 945 213 20 0 chr1 3537972 3538169 -239126184 - MER58A DNA MER1_type 0 224 24 521 236 9 9 chr1 3538202 3538312 -239126041 + MER5A DNA MER1_type 1 110 -79 346 140 0 0 chr1 3538912 3538969 -239125384 - AluS SINE Alu -246 57 1 2361 69 0 10 chr1 3538979 3539285 -239125068 - AluY SINE Alu -8 303 1 1669 140 0 76 chr1 3539388 3539703 -239124650 - AluJo SINE Alu -1 311 21 287 309 12 0 chr1 3540055 3540139 -239124214 - L2 LINE L2 -31 3282 3198 1177 269 147 14 chr1 3540622 3541139 -239123214 - MLT1E LTR MaLR -2 591 6 232 102 41 0 chr1 3541443 3541492 -239122861 + (TCTG)n Simple_repeat Simple_repeat 1 51 0 183 333 14 0 chr1 3543588 3543657 -239120696 + MIR SINE MIR 81 150 -58 846 264 60 35 chr1 3544936 3545350 -239119003 - MLT1H LTR MaLR -16 579 29 253 305 63 52 chr1 3545441 3545615 -239118738 - L2 LINE L2 -182 3090 2915 269 265 43 26 chr1 3548775 3548892 -239115461 - L2 LINE L2 -9 3304 3186 225 319 129 0 chr1 3549527 3549643 -239114710 - MIR SINE MIR -118 144 14 292 326 49 62 chr1 3550350 3550574 -239113779 - L2 LINE L2 -9 3304 3084 195 291 36 0 chr1 3550858 3550913 -239113440 - L2 LINE L2 -5 3267 3211 363 326 42 5 chr1 3551614 3551807 -239112546 - L1MC4a LINE L1 -1884 5924 5725 1932 137 6 19 chr1 3552930 3553245 -239111108 + AluSx SINE Alu 1 311 -1 1846 158 0 13 chr1 3553248 3553551 -239110802 + AluJo SINE Alu 1 299 -13 806 101 40 20 chr1 3553877 3554025 -239110328 + MER53 DNA DNA 37 187 -2 404 318 9 0 chr1 3554367 3554474 -239109879 - L2 LINE L2 -1 3312 3205 571 201 35 46 chr1 3554848 3554908 -239109445 + MLT1C LTR MaLR 6 65 -402 1491 169 143 0 chr1 3554908 3555181 -239109172 + AluJo SINE Alu 1 312 0 571 201 35 46 chr1 3555181 3555294 -239109059 + MLT1C LTR MaLR 65 177 -290 2105 94 31 44 chr1 3555356 3555456 -239108897 - MER51A LTR ERV1 0 634 534 1706 110 0 0 chr1 3555456 3555692 -239108661 + AluSq SINE Alu 1 236 -77 2105 94 31 44 chr1 3555692 3556141 -239108212 - MER51A LTR ERV1 -100 534 1 407 230 75 12 chr1 3556141 3556316 -239108037 + MLT1B LTR MaLR 273 390 0 2097 134 0 0 chr1 3556462 3556760 -239107593 - AluSx SINE Alu -10 302 5 2388 69 0 0 chr1 3557162 3557453 -239106900 - AluSx SINE Alu -21 291 1 425 294 107 19 chr1 3557707 3557999 -239106354 + L2 LINE L2 2750 3075 -238 1422 237 58 29 chr1 3558680 3558977 -239105376 - MLT1C LTR MaLR 0 467 151 1754 177 10 3 chr1 3558977 3559282 -239105071 + AluJb SINE Alu 1 307 -5 1422 237 58 29 chr1 3559282 3559431 -239104922 - MLT1C LTR MaLR -316 151 8 430 307 57 0 chr1 3559490 3559630 -239104723 + MIR SINE MIR 47 194 -68 2024 148 3 0 chr1 3560287 3560598 -239103755 - AluJo SINE Alu 0 312 1 2308 86 0 10 chr1 3561728 3562031 -239102322 + AluSc SINE Alu 1 300 -9 508 212 38 2 chr1 3562602 3562785 -239101568 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr1 3562945 3562966 -239101387 + AT_rich Low_complexity Low_complexity 1 21 0 2085 88 50 17 chr1 3563139 3563436 -239100917 + AluSp SINE Alu 1 307 -6 205 384 20 10 chr1 3563590 3563689 -239100664 - L2 LINE L2 -5 3267 3168 2034 185 57 35 chr1 3563907 3564139 -239100214 - L1MB8 LINE L1 -6 6172 5947 2007 95 32 18 chr1 3564139 3564424 -239099929 - AluSg SINE Alu -14 296 8 2034 185 57 35 chr1 3564424 3564518 -239099835 - L1MB8 LINE L1 -231 5947 5857 2255 98 0 3 chr1 3564518 3564813 -239099540 - AluSx SINE Alu -12 300 7 2034 185 57 35 chr1 3564813 3565032 -239099321 - L1MB8 LINE L1 -321 5857 5614 199 254 24 146 chr1 3565245 3565410 -239098943 + MER5A DNA MER1_type 21 165 -24 * 318 257 29 29 chr1 3565308 3565413 -239098940 - MER5A DNA MER1_type -52 137 33 1960 146 0 3 chr1 3568856 3569151 -239095202 + AluSx SINE Alu 1 294 -18 223 309 0 0 chr1 3569515 3569583 -239094770 + MIR SINE MIR 24 91 -117 352 329 81 33 chr1 3571763 3571973 -239092380 - MIR SINE MIR -31 231 12 2165 101 20 0 chr1 3575786 3576083 -239088270 + AluSx SINE Alu 1 303 -9 673 372 122 18 chr1 3576228 3576787 -239087566 + L3 LINE CR1 334 950 -627 977 133 118 0 chr1 3576828 3577039 -239087314 - L1MB4 LINE L1 0 6180 5945 882 185 29 0 chr1 3577046 3577219 -239087134 + MER58A DNA MER1_type 47 224 0 251 232 158 0 chr1 3577620 3577702 -239086651 - MIR SINE MIR -49 213 119 2175 96 0 7 chr1 3578017 3578309 -239086044 + AluSg SINE Alu 6 295 -15 818 254 62 102 chr1 3579005 3579525 -239084828 - MLT1D LTR MaLR -6 499 1 180 315 22 11 chr1 3579590 3579679 -239084674 - L2 LINE L2 -307 3006 2917 412 254 25 33 chr1 3579730 3579852 -239084501 - L2 LINE L2 -526 2788 2668 262 241 157 0 chr1 3579913 3579996 -239084357 - MER5A DNA MER1_type -83 106 11 471 278 83 14 chr1 3580007 3580223 -239084130 - L2 LINE L2 -649 2665 2435 1836 128 4 0 chr1 3580379 3580644 -239083709 + AluSx SINE Alu 34 299 -13 1394 153 66 35 chr1 3580654 3581001 -239083352 + L1MB3 LINE L1 5823 6180 -3 502 260 27 0 chr1 3581037 3581183 -239083170 + L1MC4a LINE L1 5813 5962 -1846 264 232 29 0 chr1 3581790 3581859 -239082494 + Charlie8 DNA MER1_type 127 197 -2220 233 330 104 0 chr1 3582540 3582583 -239081770 - L2 LINE L2 -4 3268 3231 1598 244 110 2 chr1 3582583 3583001 -239081352 - MLT1C LTR MaLR -4 463 1 233 330 104 0 chr1 3583001 3583063 -239081290 - L2 LINE L2 -41 3231 3152 186 331 76 45 chr1 3583469 3583626 -239080727 - L3 LINE CR1 -136 1441 1280 273 271 0 0 chr1 3585483 3585542 -239078811 + (CA)n Simple_repeat Simple_repeat 2 60 0 2096 106 20 0 chr1 3585644 3585936 -239078417 + AluSx SINE Alu 3 300 -12 205 347 76 18 chr1 3586780 3586943 -239077410 + MIR SINE MIR 18 186 -58 1730 139 55 45 chr1 3589156 3589328 -239075025 - AluJo SINE Alu 0 312 134 1771 147 25 73 chr1 3589328 3589655 -239074698 - AluJb SINE Alu 0 312 2 1730 139 55 45 chr1 3589655 3589791 -239074562 - AluJo SINE Alu -178 134 1 261 0 0 0 chr1 3589812 3589841 -239074512 + (TAA)n Simple_repeat Simple_repeat 2 30 0 287 329 73 18 chr1 3590352 3590516 -239073837 + MIR SINE MIR 8 180 -82 2161 106 0 13 chr1 3590809 3591110 -239073243 - AluSq SINE Alu -16 297 1 402 354 32 0 chr1 3595795 3595953 -239068400 + MIR SINE MIR 80 242 -20 575 284 57 44 chr1 3595978 3596207 -239068146 - MIR SINE MIR -14 248 17 239 232 0 29 chr1 3596970 3597039 -239067314 + C-rich Low_complexity Low_complexity 2 68 0 581 276 69 69 chr1 3598543 3598891 -239065462 - L2 LINE L2 -35 3278 2931 326 321 191 12 chr1 3598948 3599278 -239065075 - L2 LINE L2 -546 2768 2380 527 182 38 5 chr1 3607922 3608652 -239055701 + (TGGA)n Simple_repeat Simple_repeat 1 753 0 423 178 52 0 chr1 3608683 3609015 -239055338 + (TGGA)n Simple_repeat Simple_repeat 1 349 0 456 170 38 0 chr1 3609062 3609387 -239054966 + (TGGA)n Simple_repeat Simple_repeat 1 337 0 342 182 47 0 chr1 3609461 3609609 -239054744 + (TGGA)n Simple_repeat Simple_repeat 4 158 0 356 185 35 6 chr1 3609644 3609817 -239054536 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 205 246 16 0 chr1 3609822 3609883 -239054470 + GA-rich Low_complexity Low_complexity 3 64 0 336 205 19 0 chr1 3609885 3610041 -239054312 + (TGGA)n Simple_repeat Simple_repeat 4 162 0 624 247 64 70 chr1 3611901 3612056 -239052297 + MLT1C LTR MaLR 33 187 -280 2249 112 0 0 chr1 3612056 3612360 -239051993 + AluSx SINE Alu 1 304 -8 2328 102 0 0 chr1 3612360 3612665 -239051688 + AluSx SINE Alu 1 305 -7 624 247 64 70 chr1 3612665 3612820 -239051533 + MLT1C LTR MaLR 185 342 -125 1762 159 7 3 chr1 3614251 3614541 -239049812 + AluJb SINE Alu 1 291 -21 326 370 47 53 chr1 3614552 3614871 -239049482 + L1MEd LINE L1 196 512 -5693 357 334 63 88 chr1 3614924 3615076 -239049277 + L1MEd LINE L1 621 775 -5430 2389 60 0 17 chr1 3615076 3615375 -239048978 + AluSg SINE Alu 1 294 -16 357 334 63 88 chr1 3615375 3615496 -239048857 + L1MEd LINE L1 775 883 -5322 1202 107 11 165 chr1 3615496 3615768 -239048585 + MER30 DNA MER1_type 1 230 0 357 334 63 88 chr1 3615768 3615891 -239048462 + L1MEd LINE L1 883 1008 -5197 1911 91 0 0 chr1 3615891 3616134 -239048219 + AluSx SINE Alu 52 294 -18 1515 48 0 68 chr1 3616139 3616346 -239048007 + AluY SINE Alu 1 193 -118 297 219 0 0 chr1 3616419 3616483 -239047870 + MLT1E2 LTR MaLR 9 72 -582 1764 213 97 8 chr1 3616541 3617015 -239047338 + MLT1E2 LTR MaLR 111 626 0 427 328 35 39 chr1 3617143 3617375 -239046978 + L2 LINE L2 3083 3313 0 455 256 33 92 chr1 3617388 3617852 -239046501 + L1MEd LINE L1 1181 1645 -4751 3650 199 43 56 chr1 3618199 3618539 -239045814 + L1MB7 LINE L1 2113 2456 -3797 599 275 0 0 chr1 3618539 3618659 -239045694 + FLAM_A SINE Alu 1 120 -13 3650 199 43 56 chr1 3618659 3619222 -239045131 + L1MB7 LINE L1 2456 3025 -3228 2013 124 0 10 chr1 3619222 3619512 -239044841 + AluJb SINE Alu 21 307 -5 3650 199 43 56 chr1 3619512 3619811 -239044542 + L1MB7 LINE L1 3025 3326 -2927 2297 95 0 0 chr1 3619811 3620106 -239044247 - AluSq SINE Alu -18 295 1 3650 199 43 56 chr1 3620106 3620179 -239044174 + L1MB7 LINE L1 3326 6253 0 312 321 32 23 chr1 3620179 3620257 -239044096 + L1M4 LINE L1 2272 2348 -3798 1403 112 225 4 chr1 3620257 3620506 -239043847 - AluYb8 SINE Alu -14 304 1 312 321 32 23 chr1 3620506 3620773 -239043580 + L1M4 LINE L1 2348 2620 -3526 301 246 0 0 chr1 3620800 3620857 -239043496 + L1MC4 LINE L1 6647 6703 -1339 381 297 0 11 chr1 3620881 3620972 -239043381 - L1MC4 LINE L1 -1339 6703 6614 2173 122 0 0 chr1 3620973 3621269 -239043084 - AluSx SINE Alu -16 296 1 341 322 90 0 chr1 3621269 3621446 -239042907 + L1M4 LINE L1 2638 2830 -3316 653 123 98 33 chr1 3621498 3621620 -239042733 + FLAM_C SINE Alu 4 133 0 1334 94 0 0 chr1 3621630 3621800 -239042553 + AluSc SINE Alu 1 170 -139 1586 116 0 4 chr1 3621800 3622025 -239042328 + AluSc SINE Alu 70 293 -16 201 320 20 40 chr1 3622958 3623058 -239041295 + MIR3 SINE MIR 3 100 -108 338 314 41 8 chr1 3623147 3623268 -239041085 - MIR3 SINE MIR -71 137 13 3160 217 42 40 chr1 3623416 3623896 -239040457 + L1MB7 LINE L1 5302 5779 -405 2399 77 10 0 chr1 3623896 3624206 -239040147 + AluSq SINE Alu 1 313 0 3160 217 42 40 chr1 3624206 3624540 -239039813 + L1MB7 LINE L1 5779 6121 -63 2213 81 0 10 chr1 3624540 3624837 -239039516 - AluSx SINE Alu -18 294 1 3160 217 42 40 chr1 3624837 3624901 -239039452 + L1MB7 LINE L1 6121 6183 -1 204 205 0 0 chr1 3625218 3625257 -239039096 + GA-rich Low_complexity Low_complexity 1 39 0 192 261 82 67 chr1 3627918 3628052 -239036301 + L2 LINE L2 2976 3111 -161 2009 136 7 0 chr1 3628314 3628615 -239035738 + AluSx SINE Alu 1 303 -9 225 259 35 35 chr1 3631040 3631125 -239033228 + MIR3 SINE MIR 70 154 -54 310 297 68 7 chr1 3633345 3633493 -239030860 - HAL1b LINE L1 -806 542 386 494 316 84 85 chr1 3633514 3633972 -239030381 - L1MEc LINE L1 -1107 1469 982 270 0 0 0 chr1 3633989 3634019 -239030334 + (TC)n Simple_repeat Simple_repeat 1 30 0 938 168 6 12 chr1 3634021 3634182 -239030171 - AluJo SINE Alu -30 282 123 242 260 106 16 chr1 3634695 3634818 -239029535 + L2 LINE L2 3138 3271 -1 226 274 145 16 chr1 3636715 3636839 -239027514 - MIR SINE MIR -74 188 49 2080 116 10 7 chr1 3636847 3637148 -239027205 + AluSx SINE Alu 11 312 0 1741 151 3 7 chr1 3638231 3638515 -239025838 - AluJb SINE Alu -29 283 1 747 199 8 0 chr1 3638610 3638741 -239025612 - AluJo SINE Alu -180 132 1 219 296 114 0 chr1 3638743 3638831 -239025522 - MIR SINE MIR -113 149 52 599 190 0 49 chr1 3638835 3638977 -239025376 + MER45C DNA AcHobo 55 189 -764 696 206 221 32 chr1 3639066 3639202 -239025151 + MER45C DNA AcHobo 653 762 -819 1971 154 0 3 chr1 3639202 3639507 -239024846 + AluSx SINE Alu 1 304 -8 696 206 221 32 chr1 3639507 3639623 -239024730 + MER45C DNA AcHobo 762 953 0 2601 180 25 44 chr1 3639811 3640327 -239024026 + L1MB2 LINE L1 5586 6110 -61 257 0 30 0 chr1 3640327 3640360 -239023993 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2165 82 32 0 chr1 3640364 3640645 -239023708 - AluSq SINE Alu -23 290 1 1212 166 0 0 chr1 3640648 3640823 -239023530 - FAM SINE Alu 0 175 1 2601 180 25 44 chr1 3640823 3640887 -239023466 + L1MB2 LINE L1 6115 6164 -7 2302 94 3 0 chr1 3641229 3641536 -239022817 + AluSc SINE Alu 1 308 -1 268 176 0 0 chr1 3641536 3641587 -239022766 + MER5A DNA MER1_type 62 112 -77 371 241 152 18 chr1 3641628 3641740 -239022613 - MIR SINE MIR -60 202 76 1134 217 120 69 chr1 3641748 3641827 -239022526 + MLT1C LTR MaLR 10 84 -383 1454 165 137 4 chr1 3641827 3642110 -239022243 + AluJb SINE Alu 3 318 0 1907 122 7 10 chr1 3642110 3642435 -239021918 + AluSx SINE Alu 1 324 0 1686 141 7 4 chr1 3642442 3642711 -239021642 + AluSx SINE Alu 1 270 -42 210 37 0 0 chr1 3642715 3642742 -239021611 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1134 217 120 69 chr1 3642742 3643080 -239021273 + MLT1C LTR MaLR 91 465 -2 533 333 78 19 chr1 3643776 3644097 -239020256 + L2 LINE L2 2931 3270 -2 1731 130 87 0 chr1 3644165 3644441 -239019912 - AluJo SINE Alu -12 300 1 1233 101 6 22 chr1 3844629 3844647 -238819706 + AluSg/x SINE Alu 116 133 -177 2170 123 3 7 chr1 3844647 3844955 -238819398 + AluSx SINE Alu 1 307 -5 1233 101 6 22 chr1 3844955 3845109 -238819244 + AluSg/x SINE Alu 129 286 -20 237 33 0 0 chr1 3845109 3845139 -238819214 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 332 314 34 8 chr1 3845762 3845880 -238818473 + MIR SINE MIR 124 244 -18 2462 72 0 0 chr1 3845885 3846178 -238818175 - AluY SINE Alu -18 293 1 2446 87 3 0 chr1 3846531 3846830 -238817523 - AluSp SINE Alu -13 300 1 1481 210 4 0 chr1 3846877 3847129 -238817224 + AluJb SINE Alu 1 253 -59 1452 129 42 104 chr1 3847145 3847483 -238816870 + AluSx SINE Alu 1 312 0 663 70 0 0 chr1 3847493 3847579 -238816774 + L1PA10 LINE L1 5805 5890 -278 262 107 30 0 chr1 3847579 3847636 -238816717 + AluJb SINE Alu 117 170 -132 1331 143 82 4 chr1 3847636 3847880 -238816473 - L1PA11 LINE L1 -24 6150 5888 1244 150 0 0 chr1 3848003 3848190 -238816163 + AluJb SINE Alu 117 303 -9 276 308 14 7 chr1 3848593 3848705 -238815648 - MIR SINE MIR -51 211 100 2356 88 0 14 chr1 3849091 3849388 -238814965 + AluY SINE Alu 1 293 -18 1681 137 12 99 chr1 3849417 3849739 -238814614 + AluJo SINE Alu 1 294 -18 444 241 49 12 chr1 3849752 3849914 -238814439 + L2 LINE L2 2856 3023 -290 227 225 50 38 chr1 3849947 3850027 -238814326 + MIR SINE MIR 75 155 -107 1577 119 5 0 chr1 3850787 3851005 -238813348 + AluSx SINE Alu 1 219 -93 707 130 0 32 chr1 3851005 3851128 -238813225 + AluSg/x SINE Alu 188 306 -6 559 224 133 12 chr1 3851167 3851332 -238813021 - MER58 DNA MER1_type -2177 243 59 686 199 0 22 chr1 3852818 3852954 -238811399 + AluJo SINE Alu 2 134 -178 2122 123 0 0 chr1 3852955 3853232 -238811121 + AluSp SINE Alu 1 277 -36 201 39 0 0 chr1 3853242 3853268 -238811085 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2197 84 7 3 chr1 3853268 3853554 -238810799 + AluY SINE Alu 1 287 -24 2317 91 0 26 chr1 3854074 3854244 -238810109 - AluSx SINE Alu -11 301 128 317 86 17 0 chr1 3854244 3854302 -238810051 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2059 114 4 4 chr1 3854302 3854582 -238809771 - AluSc SINE Alu -29 280 1 2317 91 0 26 chr1 3854582 3854719 -238809634 - AluSx SINE Alu -182 130 1 1594 140 85 51 chr1 3854719 3854875 -238809478 - AluJb SINE Alu -9 303 154 2180 82 4 0 chr1 3854875 3855155 -238809198 - AluY SINE Alu 0 311 31 1594 140 85 51 chr1 3855155 3855291 -238809062 - AluJb SINE Alu -158 154 1 2188 128 7 0 chr1 3855564 3855860 -238808493 + AluSg SINE Alu 1 298 -12 1827 157 14 7 chr1 3855878 3856172 -238808181 + AluSx SINE Alu 5 300 -12 2085 128 21 0 chr1 3856293 3856581 -238807772 + AluSx SINE Alu 5 298 -14 1414 135 24 0 chr1 3856746 3856954 -238807399 - AluSg/x SINE Alu -14 296 84 1825 163 0 14 chr1 3856982 3857277 -238807076 + AluJb SINE Alu 1 291 -21 700 110 0 0 chr1 3857285 3857385 -238806968 + AluS SINE Alu 2 101 -212 25 0 0 0 chr1 3857842 3857867 -238806486 + GC_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr1 3858859 3858899 -238805454 + GC_rich Low_complexity Low_complexity 1 40 0 189 246 0 0 chr1 3858929 3858994 -238805359 + C-rich Low_complexity Low_complexity 1 65 0 2162 107 10 10 chr1 3859332 3859642 -238804711 + AluSx SINE Alu 1 310 -2 1645 177 38 3 chr1 3859911 3860199 -238804154 - AluJb SINE Alu -14 298 1 1714 253 196 26 chr1 3860305 3861369 -238802984 - L2 LINE L2 -787 2527 1283 331 310 31 0 chr1 3861686 3861815 -238802538 - HAL1 LINE L1 -873 1634 1502 1188 127 0 33 chr1 3861829 3862010 -238802343 - AluSg/x SINE Alu -1 309 135 208 320 13 13 chr1 3862418 3862496 -238801857 - L2 LINE L2 -773 2541 2464 225 94 0 0 chr1 3863232 3863264 -238801089 + (TG)n Simple_repeat Simple_repeat 2 33 0 1361 128 59 0 chr1 3863264 3863468 -238800885 - AluJo SINE Alu -27 285 70 1553 185 0 58 chr1 3863481 3863643 -238800710 - AluJo SINE Alu -17 295 158 2217 114 14 0 chr1 3863643 3863933 -238800420 - AluSx SINE Alu -18 294 1 1553 185 0 58 chr1 3863933 3864078 -238800275 - AluJo SINE Alu -154 158 6 664 219 7 0 chr1 3864121 3864282 -238800071 + FRAM SINE Alu 9 170 0 2309 78 14 0 chr1 3864284 3864579 -238799774 + AluY SINE Alu 3 301 -10 1861 159 21 0 chr1 3864579 3864868 -238799485 + AluJo SINE Alu 1 295 -17 1067 73 0 0 chr1 3864892 3865015 -238799338 + AluSq/x SINE Alu 13 135 -177 2296 100 0 0 chr1 3865015 3865306 -238799047 + AluY SINE Alu 1 291 -20 2201 100 7 13 chr1 3865309 3865608 -238798745 + AluY SINE Alu 1 297 -14 280 241 114 0 chr1 3866217 3866296 -238798057 - L1MD3 LINE L1 -93 7902 7815 2033 117 10 10 chr1 3866298 3866589 -238797764 + AluSx SINE Alu 9 299 -13 1195 140 6 0 chr1 3866589 3866760 -238797593 + AluSg/x SINE Alu 134 305 -7 238 200 0 0 chr1 3866762 3866807 -238797546 - L1MC4a LINE L1 -150 7658 7614 422 161 0 37 chr1 3866837 3866918 -238797435 - U6 snRNA snRNA -29 78 1 2013 135 3 14 chr1 3866930 3867227 -238797126 - AluSx SINE Alu -18 294 1 382 140 18 0 chr1 3867247 3867316 -238797037 + AluJb SINE Alu 94 148 -154 2580 73 0 0 chr1 3867350 3867653 -238796700 + AluYa5 SINE Alu 1 303 -8 974 90 0 0 chr1 3867655 3867777 -238796576 + AluSp/q SINE Alu 170 291 -22 3193 159 58 20 chr1 3867804 3867988 -238796365 - L1MB4 LINE L1 -172 6008 5832 1749 178 13 16 chr1 3867988 3868292 -238796061 + AluJb SINE Alu 1 303 -9 3193 159 58 20 chr1 3868292 3868762 -238795591 - L1MB4 LINE L1 -348 5832 5329 2140 123 38 0 chr1 3868778 3869071 -238795282 - AluSx SINE Alu -8 304 1 2058 84 49 21 chr1 3869077 3869364 -238794989 - AluSq SINE Alu -1 312 18 302 307 42 85 chr1 3869561 3869646 -238794707 + L1MC4 LINE L1 5646 5733 -2075 615 186 65 16 chr1 3869646 3869770 -238794583 + FLAM_A SINE Alu 1 130 -3 302 307 42 85 chr1 3869770 3869873 -238794480 + L1MC4 LINE L1 5733 5826 -1982 2331 100 3 0 chr1 3869873 3870173 -238794180 + AluSx SINE Alu 1 301 -11 312 266 0 0 chr1 3870216 3870280 -238794073 + L1MC4 LINE L1 6640 6703 -1339 * 319 239 30 0 chr1 3870249 3870316 -238794037 + L1MCa LINE L1 1996 2064 -4362 * 356 298 0 0 chr1 3870284 3870401 -238793952 - L1MC4 LINE L1 -1139 6646 6571 189 0 0 0 chr1 3870403 3870424 -238793929 + (CA)n Simple_repeat Simple_repeat 2 22 0 1094 138 0 12 chr1 3870463 3870623 -238793730 + AluSx SINE Alu 1 158 -154 1658 85 0 0 chr1 3870623 3870823 -238793530 + AluY SINE Alu 101 300 -11 2492 52 3 0 chr1 3871441 3871728 -238792625 - AluY SINE Alu -23 288 1 2359 97 0 0 chr1 3871775 3872073 -238792280 + AluY SINE Alu 1 298 -13 1712 84 18 92 chr1 3872075 3872411 -238791942 + LTR14A LTR ERVK 54 343 -1 1924 270 24 22 chr1 3872417 3872513 -238791840 + HERVFH21 LTR ERV1 5932 6026 -503 2207 107 0 13 chr1 3872513 3872813 -238791540 - AluY SINE Alu -15 296 1 1924 270 24 22 chr1 3872813 3873237 -238791116 + HERVFH21 LTR ERV1 6026 6456 -73 2576 46 0 16 chr1 3873237 3873542 -238790811 - AluY SINE Alu -11 300 1 1924 270 24 22 chr1 3873542 3873617 -238790736 + HERVFH21 LTR ERV1 6456 6529 0 528 149 26 35 chr1 3873832 3873946 -238790407 + LTR21B LTR ERV1 326 438 0 2114 96 14 7 chr1 3873946 3874226 -238790127 - AluSp SINE Alu -31 282 1 1981 108 3 93 chr1 3874226 3874557 -238789796 - AluSq SINE Alu -11 302 1 2139 128 0 3 chr1 3874569 3874867 -238789486 - AluSx SINE Alu -15 297 1 236 178 0 0 chr1 3874868 3874887 -238789466 - MLT2D LTR ERVL -288 126 108 372 128 13 34 chr1 3874887 3874965 -238789388 + AluJo SINE Alu 1 52 -251 1516 161 0 29 chr1 3875066 3875339 -238789014 + AluJo SINE Alu 44 308 -4 192 279 0 0 chr1 3875457 3875500 -238788853 - L3 LINE CR1 -305 1272 1230 2241 103 7 3 chr1 3875730 3876030 -238788323 - AluSg SINE Alu -9 301 1 2187 122 0 10 chr1 3876057 3876348 -238788005 + AluSx SINE Alu 1 290 -22 225 0 0 0 chr1 3876348 3876373 -238787980 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2187 122 0 10 chr1 3876373 3876385 -238787968 + AluSx SINE Alu 290 301 -11 2663 55 0 0 chr1 3876588 3876895 -238787458 + AluY SINE Alu 1 307 -4 21 0 0 0 chr1 3878344 3878365 -238785988 + GC_rich Low_complexity Low_complexity 1 21 0 227 188 0 14 chr1 3878497 3878566 -238785787 + (CCCGAA)n Simple_repeat Simple_repeat 3 70 0 2329 97 0 10 chr1 3878888 3879197 -238785156 - AluSc SINE Alu -1 308 3 327 269 161 47 chr1 3879239 3879432 -238784921 - MIR SINE MIR -12 250 36 2333 111 0 0 chr1 3879647 3879945 -238784408 + AluSx SINE Alu 1 298 -14 212 262 0 0 chr1 3879947 3879989 -238784364 + polypurine Low_complexity Low_complexity 5 46 0 925 181 165 0 chr1 3879989 3880171 -238784182 + AluSx SINE Alu 1 212 -100 608 140 0 0 chr1 3880176 3880269 -238784084 + AluSp SINE Alu 141 233 -80 197 33 33 0 chr1 3880280 3880310 -238784043 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 663 70 0 0 chr1 3880329 3880415 -238783938 + L1PA10 LINE L1 5805 5890 -278 318 81 6 0 chr1 3880415 3880473 -238783880 + Alu SINE Alu 1 40 -262 1428 138 73 19 chr1 3880473 3880700 -238783653 - L1PA11 LINE L1 -24 6150 5906 2544 58 0 13 chr1 3880700 3881009 -238783344 - AluY SINE Alu -6 305 1 1428 138 73 19 chr1 3881009 3881041 -238783312 - L1PA11 LINE L1 -268 5906 5877 1338 134 43 94 chr1 3881148 3881477 -238782876 - AluSx SINE Alu 0 314 1 1481 210 4 0 chr1 3881493 3881745 -238782608 - AluJb SINE Alu -59 253 1 2363 90 3 0 chr1 3881792 3882082 -238782271 + AluSp SINE Alu 1 291 -22 3146 160 55 68 chr1 3882109 3882293 -238782060 - L1MB4 LINE L1 -172 6008 5823 1749 178 13 16 chr1 3882293 3882597 -238781756 + AluJb SINE Alu 1 303 -9 3146 160 55 68 chr1 3882597 3883083 -238781270 - L1MB4 LINE L1 -357 5823 5332 2140 123 38 0 chr1 3883083 3883376 -238780977 - AluSx SINE Alu -8 304 1 2187 99 43 16 chr1 3883382 3883686 -238780667 - AluSq SINE Alu -1 312 1 3146 160 55 68 chr1 3883686 3884012 -238780341 - L1MB4 LINE L1 -853 5327 5010 330 58 0 0 chr1 3884065 3884117 -238780236 - Alu SINE Alu 0 300 249 967 67 0 8 chr1 3884117 3884236 -238780117 - AluYb8 SINE Alu -200 118 1 902 230 118 0 chr1 3884237 3884507 -238779846 - L1MB4 LINE L1 -1118 5028 4727 * 2382 182 62 12 chr1 3884495 3885061 -238779292 - L1 LINE L1 -791 5355 4762 584 216 65 29 chr1 3885066 3885205 -238779148 - FRAM SINE Alu -30 146 3 21 0 0 0 chr1 3885225 3885246 -238779107 + AT_rich Low_complexity Low_complexity 1 21 0 1489 200 46 7 chr1 3885246 3885531 -238778822 - AluJo SINE Alu -16 296 1 886 173 26 108 chr1 3885531 3885695 -238778658 - AluJo SINE Alu -16 296 120 269 0 56 0 chr1 3885695 3885731 -238778622 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 2376 71 0 0 chr1 3885731 3886012 -238778341 - AluY SINE Alu -30 281 1 886 173 26 108 chr1 3886012 3886077 -238778276 - AluJo SINE Alu -190 122 85 2417 94 0 3 chr1 3886133 3886432 -238777921 - AluSq SINE Alu -15 298 1 1325 260 28 65 chr1 3886645 3886969 -238777384 - L1MC4 LINE L1 -1110 6932 6631 2212 127 0 19 chr1 3886969 3887283 -238777070 + AluSx SINE Alu 3 310 -2 1325 260 28 65 chr1 3887283 3887451 -238776902 - L1MC4 LINE L1 -1411 6631 6458 511 238 94 59 chr1 3887727 3887890 -238776463 + MIR SINE MIR 15 188 -74 2477 85 3 0 chr1 3887890 3888195 -238776158 + AluSp SINE Alu 1 306 -7 511 238 94 59 chr1 3888195 3888233 -238776120 + MIR SINE MIR 188 223 -39 363 326 53 8 chr1 3888263 3888395 -238775958 + L2 LINE L2 3173 3310 -3 1980 167 0 7 chr1 3888881 3889186 -238775167 - AluSx SINE Alu -9 303 1 653 292 82 0 chr1 3890161 3890380 -238773973 - MIR SINE MIR -24 238 2 2328 100 0 0 chr1 3890564 3890863 -238773490 + AluY SINE Alu 1 299 -12 351 244 163 53 chr1 3891007 3891216 -238773137 - MIR SINE MIR -10 252 21 319 324 75 6 chr1 3891236 3891409 -238772944 - MIR SINE MIR -18 244 60 2284 101 3 3 chr1 3891599 3891905 -238772448 - AluSq SINE Alu -7 306 1 1024 179 0 42 chr1 3891930 3892120 -238772233 - AluSg/x SINE Alu -9 303 122 2236 138 0 0 chr1 3892121 3892433 -238771920 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 3892438 3892459 -238771894 + AT_rich Low_complexity Low_complexity 1 21 0 2293 107 3 0 chr1 3892459 3892768 -238771585 - AluSg SINE Alu 0 310 1 315 311 145 29 chr1 3893257 3893775 -238770578 + L2 LINE L2 2091 2668 -646 2264 117 3 0 chr1 3894123 3894423 -238769930 - AluSg SINE Alu -7 303 3 228 35 0 0 chr1 3894428 3894457 -238769896 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1634 120 8 8 chr1 3894476 3894710 -238769643 - AluSg SINE Alu -76 234 1 2306 96 7 3 chr1 3894810 3895113 -238769240 - AluSx SINE Alu -8 304 1 780 191 76 25 chr1 3896775 3896932 -238767421 + FRAM SINE Alu 1 165 -11 2361 77 0 3 chr1 3897038 3897338 -238767015 + AluY SINE Alu 1 299 -12 2368 78 3 0 chr1 3898473 3898779 -238765574 - AluSq SINE Alu -6 307 1 2007 106 0 4 chr1 3898890 3899165 -238765188 - AluSg SINE Alu -5 305 32 2468 66 0 0 chr1 3899171 3899473 -238764880 - AluSg SINE Alu -8 302 1 2041 131 13 0 chr1 3899501 3899807 -238764546 - AluSx SINE Alu 0 312 3 1270 86 6 17 chr1 3899839 3900013 -238764340 - AluSg SINE Alu -138 172 1 309 305 76 8 chr1 3900045 3900176 -238764177 + MIR SINE MIR 11 150 -112 191 375 67 42 chr1 3900401 3900521 -238763832 - L3b LINE CR1 -73 1510 1388 334 263 202 0 chr1 3900654 3900768 -238763585 - L1ME4a LINE L1 -215 5906 5770 1976 126 23 19 chr1 3900887 3901197 -238763156 - AluSx SINE Alu -1 311 1 803 141 0 8 chr1 3901437 3901565 -238762788 + FLAM_C SINE Alu 13 139 -4 2343 68 3 0 chr1 3902936 3903230 -238761123 + AluY SINE Alu 2 296 -15 193 274 27 27 chr1 3903303 3903376 -238760977 + MIR3 SINE MIR 124 196 -12 2332 84 7 0 chr1 3903488 3903798 -238760555 - AluSp SINE Alu -1 312 1 455 172 0 0 chr1 3903868 3903932 -238760421 + T-rich Low_complexity Low_complexity 1 64 0 736 260 0 9 chr1 3904032 3904263 -238760090 - HERVFH21 LTR ERV1 -1618 6781 6553 4523 144 14 4 chr1 3904598 3905473 -238758880 - HERVFH21 LTR ERV1 -1200 5329 4572 1606 264 50 23 chr1 3905510 3905933 -238758420 - HERVFH21 LTR ERV1 -64 6465 6024 2107 107 0 13 chr1 3905933 3906233 -238758120 + AluY SINE Alu 1 296 -15 1606 264 50 23 chr1 3906233 3906329 -238758024 - HERVFH21 LTR ERV1 -505 6024 5932 1676 115 146 6 chr1 3906335 3906673 -238757680 - LTR14B LTR ERVK -1 607 318 2280 94 0 0 chr1 3906673 3906971 -238757382 - AluY SINE Alu -13 298 1 1676 115 146 6 chr1 3906971 3907085 -238757268 - LTR14B LTR ERVK -290 318 1 4681 259 4 14 chr1 3907087 3908298 -238756055 - HERVFH21 LTR ERV1 -648 7751 6553 5085 139 13 3 chr1 3908633 3909591 -238754762 - HERVFH21 LTR ERV1 -1200 5329 4540 2130 251 17 0 chr1 3909585 3910108 -238754245 - HERVFH21 LTR ERV1 -2649 3880 3349 * 812 112 0 0 chr1 3910108 3910224 -238754129 - AluSg/x SINE Alu -4 306 191 11754 197 22 38 chr1 3910224 3911113 -238753240 - HERVFH21 LTR ERV1 -3172 3357 2455 2238 74 3 0 chr1 3911113 3911397 -238752956 - AluY SINE Alu -26 285 1 11754 197 22 38 chr1 3911397 3911783 -238752570 - HERVFH21 LTR ERV1 -4074 2455 2064 2522 47 3 0 chr1 3911783 3912083 -238752270 + AluY SINE Alu 1 301 -10 11754 197 22 38 chr1 3912083 3912671 -238751682 - HERVFH21 LTR ERV1 -4465 2064 1468 2340 73 0 19 chr1 3912671 3912986 -238751367 + AluY SINE Alu 1 309 -2 11754 197 22 38 chr1 3912986 3914608 -238749745 - HERVFH21 LTR ERV1 -5061 1468 5 576 143 33 44 chr1 3914608 3914786 -238749567 - LTR21B LTR ERV1 0 438 310 777 191 77 59 chr1 3914954 3915174 -238749179 + MLT2D LTR ERVL 188 411 -3 182 183 17 100 chr1 3915289 3915349 -238749004 + L3 LINE CR1 1516 1570 -7 1778 140 37 0 chr1 3916050 3916322 -238748031 + AluSx SINE Alu 1 282 -30 1791 155 31 3 chr1 3916768 3917059 -238747294 - AluJo SINE Alu -9 303 5 253 413 18 6 chr1 3917503 3917670 -238746683 + L2 LINE L2 2545 2713 -601 2123 109 0 3 chr1 3917683 3917976 -238746377 + AluSg SINE Alu 6 297 -13 2714 89 105 7 chr1 3918036 3918156 -238746197 - MER1A DNA MER1_type -2173 529 422 2419 65 0 3 chr1 3918156 3918466 -238745887 - AluY SINE Alu -2 309 1 2714 89 105 7 chr1 3918466 3918794 -238745559 - MER1A DNA MER1_type -2280 422 37 317 356 97 8 chr1 3918803 3919050 -238745303 + L2 LINE L2 2830 3098 -174 199 265 59 0 chr1 3919051 3919119 -238745234 + L2 LINE L2 3200 3271 -1 1888 107 7 15 chr1 3920016 3920189 -238744164 - AluSx SINE Alu 0 308 136 2350 81 0 7 chr1 3920189 3920497 -238743856 - AluY SINE Alu -5 306 1 1888 107 7 15 chr1 3920497 3920619 -238743734 - AluSx SINE Alu -172 136 15 2096 94 31 3 chr1 3921757 3922043 -238742310 + AluSx SINE Alu 3 296 -16 2439 71 0 10 chr1 3922046 3922356 -238741997 + AluSq SINE Alu 1 307 -6 189 0 0 0 chr1 3923286 3923307 -238741046 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1935 141 0 20 chr1 3925879 3926183 -238738170 + AluJb SINE Alu 1 298 -14 850 131 0 44 chr1 3927336 3927473 -238736880 - FLAM_C SINE Alu -2 131 1 2113 127 3 3 chr1 3927484 3927792 -238736561 - AluSc SINE Alu -1 308 1 2265 98 3 0 chr1 3927796 3928102 -238736251 - AluSg SINE Alu -3 307 1 2020 117 10 10 chr1 3928104 3928271 -238736082 - AluSg SINE Alu -10 300 131 2221 99 0 16 chr1 3928271 3928585 -238735768 - AluSg SINE Alu -1 309 1 2020 117 10 10 chr1 3928585 3928717 -238735636 - AluSg SINE Alu -178 132 1 584 251 61 0 chr1 3928723 3928886 -238735467 - MER3 DNA MER1_type -83 126 1 541 286 129 40 chr1 3929393 3930071 -238734282 - L2 LINE L2 -19 3294 2554 780 188 0 0 chr1 3934444 3934577 -238729776 + AluSg/x SINE Alu 172 304 -6 749 186 0 0 chr1 3934925 3935043 -238729310 - AluJb SINE Alu -194 118 1 313 308 14 7 chr1 3938426 3938538 -238725815 - MIR SINE MIR -51 211 100 2241 88 0 14 chr1 3938924 3939221 -238725132 + AluY SINE Alu 1 293 -18 1639 136 9 99 chr1 3939250 3939573 -238724780 + AluJo SINE Alu 1 294 -18 488 241 49 12 chr1 3939586 3939748 -238724605 + L2 LINE L2 2856 3023 -290 229 250 38 25 chr1 3939781 3939861 -238724492 + MIR SINE MIR 75 155 -107 1509 119 5 0 chr1 3940621 3940839 -238723514 + AluSx SINE Alu 1 219 -93 759 130 0 32 chr1 3940839 3940962 -238723391 + AluSg/x SINE Alu 188 306 -6 531 224 133 12 chr1 3941001 3941166 -238723187 - MER58 DNA MER1_type -2177 243 59 745 197 0 22 chr1 3942653 3942790 -238721563 + AluJo SINE Alu 1 134 -178 2026 123 0 0 chr1 3942791 3943068 -238721285 + AluSp SINE Alu 1 277 -36 201 39 0 0 chr1 3943078 3943104 -238721249 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2361 80 0 3 chr1 3943104 3943415 -238720938 + AluY SINE Alu 1 310 -1 181 217 22 22 chr1 3943429 3943475 -238720878 + MIR SINE MIR 106 151 -111 260 277 0 85 chr1 3944452 3944550 -238719803 + L1ME3A LINE L1 6052 6138 -32 1943 149 10 0 chr1 3944550 3944846 -238719507 - AluJb SINE Alu -13 299 1 260 277 0 85 chr1 3944846 3944877 -238719476 + L1ME3A LINE L1 6138 6170 0 30 77 0 0 chr1 3947476 3947541 -238716812 + GC_rich Low_complexity Low_complexity 1 65 0 1396 117 120 62 chr1 3949244 3949518 -238714835 + AluSx SINE Alu 1 290 -12 548 214 179 29 chr1 3949530 3949670 -238714683 + FRAM SINE Alu 1 161 -5 515 133 133 0 chr1 3949962 3950052 -238714301 - AluSc SINE Alu -17 292 191 769 124 0 0 chr1 3950054 3950167 -238714186 + AluSg/x SINE Alu 196 308 -2 2141 99 3 3 chr1 3950353 3950646 -238713707 - AluSx SINE Alu -19 293 1 1744 163 0 14 chr1 3950654 3950949 -238713404 - AluJb SINE Alu -21 291 1 1373 133 24 0 chr1 3950977 3951187 -238713166 + AluSg/x SINE Alu 84 298 -12 1989 128 21 0 chr1 3951350 3951638 -238712715 - AluSx SINE Alu -14 298 5 1743 157 14 7 chr1 3951759 3952053 -238712300 - AluSx SINE Alu -12 300 5 2091 128 7 0 chr1 3952071 3952367 -238711986 - AluSg SINE Alu -12 298 1 1519 143 85 51 chr1 3952640 3952776 -238711577 + AluJb SINE Alu 1 131 -181 2080 82 4 0 chr1 3952776 3953056 -238711297 + AluY SINE Alu 31 311 0 1519 143 85 51 chr1 3953056 3953212 -238711141 + AluJb SINE Alu 131 303 -9 2205 91 0 26 chr1 3953212 3953349 -238711004 + AluSx SINE Alu 1 140 -172 1966 114 4 4 chr1 3953349 3953687 -238710666 + AluSc SINE Alu 1 338 0 2205 91 0 26 chr1 3953687 3953857 -238710496 + AluSx SINE Alu 140 301 -11 2078 85 0 0 chr1 3954377 3954647 -238709706 - AluSc SINE Alu -24 285 16 2031 124 10 3 chr1 3954913 3955212 -238709141 + AluSq SINE Alu 3 303 -10 844 162 26 26 chr1 3955403 3955594 -238708759 + AluJo SINE Alu 4 194 -118 728 67 0 0 chr1 3955597 3955687 -238708666 - AluSp/q SINE Alu -16 297 208 816 78 0 0 chr1 3955691 3955793 -238708560 - AluS SINE Alu -211 102 1 2187 89 3 0 chr1 3955934 3956227 -238708126 + AluSc SINE Alu 1 294 -15 198 0 0 0 chr1 3956562 3956584 -238707769 + (CAA)n Simple_repeat Simple_repeat 2 23 0 201 143 0 0 chr1 3956621 3956656 -238707697 - MIR SINE MIR -66 142 108 2471 54 0 0 chr1 3956657 3956954 -238707399 - AluSg SINE Alu -13 297 1 211 306 0 25 chr1 3957857 3957978 -238706375 + (CCG)n Simple_repeat Simple_repeat 1 118 0 * 246 210 8 89 chr1 3957890 3958014 -238706339 + C-rich Low_complexity Low_complexity 6 119 0 217 196 0 89 chr1 3958453 3958565 -238705788 + C-rich Low_complexity Low_complexity 4 105 0 25 31 0 0 chr1 3959078 3959110 -238705243 + GC_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr1 3959244 3959270 -238705083 + GC_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr1 3959627 3959650 -238704703 + GC_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr1 3959683 3959733 -238704620 + GC_rich Low_complexity Low_complexity 1 50 0 2362 60 3 3 chr1 3960529 3960829 -238703524 - AluSg SINE Alu -9 301 2 1719 130 69 0 chr1 3961611 3961887 -238702466 - AluSx SINE Alu -17 295 1 1913 116 33 10 chr1 3961931 3962232 -238702121 - AluSg SINE Alu -2 308 1 490 254 40 20 chr1 3962305 3962467 -238701886 - MIR SINE MIR -62 146 12 1838 148 10 0 chr1 3962645 3962936 -238701417 - AluJb SINE Alu -18 294 1 694 163 106 0 chr1 3962937 3963060 -238701293 - AluJo SINE Alu -176 136 1 2163 115 0 10 chr1 3963137 3963450 -238700903 - AluSx SINE Alu -2 310 1 2022 98 42 7 chr1 3963856 3964142 -238700211 - AluSq SINE Alu -17 296 1 205 179 0 0 chr1 3964495 3964534 -238699819 + GA-rich Low_complexity Low_complexity 2 40 0 1868 147 7 7 chr1 3965108 3965241 -238699112 + AluJo SINE Alu 1 133 -179 2220 80 6 45 chr1 3965241 3965553 -238698800 + AluSg SINE Alu 1 300 -10 1868 147 7 7 chr1 3965553 3965719 -238698634 + AluJo SINE Alu 132 300 -12 2116 117 0 10 chr1 3968768 3969076 -238695277 - AluSq SINE Alu -8 305 1 24 0 0 0 chr1 3969942 3969966 -238694387 + GC_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr1 3970249 3970273 -238694080 + (CCCGG)n Simple_repeat Simple_repeat 3 26 0 212 306 45 45 chr1 3970300 3970411 -238693942 + L2 LINE L2 1724 1834 -1480 362 239 91 77 chr1 3970424 3970529 -238693824 - L1ME3A LINE L1 -9 6161 6059 1968 124 7 7 chr1 3970529 3970827 -238693526 + AluJo SINE Alu 1 298 -14 362 239 91 77 chr1 3970827 3970930 -238693423 - L1ME3A LINE L1 -111 6059 5950 363 230 32 97 chr1 3970934 3971059 -238693294 - L1ME3A LINE L1 -352 5826 5719 2204 90 0 26 chr1 3971059 3971369 -238692984 + AluSx SINE Alu 1 302 -10 363 230 32 97 chr1 3971369 3971460 -238692893 - L1ME3A LINE L1 -459 5719 5624 445 290 172 56 chr1 3971533 3971876 -238692477 + L2 LINE L2 1952 2254 -1060 1987 134 3 0 chr1 3971876 3972168 -238692185 - AluSx SINE Alu -19 293 1 445 290 172 56 chr1 3972168 3972342 -238692011 + L2 LINE L2 2254 2586 -728 247 360 198 7 chr1 3972483 3972761 -238691592 + L2 LINE L2 2966 3296 -17 1739 109 4 0 chr1 3973423 3973661 -238690692 + AluSq SINE Alu 1 239 -74 330 343 171 0 chr1 3973897 3974247 -238690106 + L2 LINE L2 2903 3312 -1 2163 95 14 3 chr1 3975077 3975373 -238688980 - AluSx SINE Alu -11 301 3 814 191 0 0 chr1 3975381 3975512 -238688841 - FLAM_C SINE Alu -2 131 1 1553 185 3 39 chr1 3975512 3975820 -238688533 - AluJo SINE Alu -15 297 1 1253 157 0 27 chr1 3975849 3976072 -238688281 + AluJo SINE Alu 1 217 -95 426 39 0 0 chr1 3976073 3976125 -238688228 + AluSg/x SINE Alu 82 133 -177 1869 108 72 4 chr1 3976126 3976404 -238687949 + AluSq SINE Alu 1 297 -16 1268 175 15 105 chr1 3976406 3976731 -238687622 + AluJb SINE Alu 1 296 -16 2013 113 0 27 chr1 3978130 3978430 -238685923 + AluSx SINE Alu 1 292 -20 24 0 0 0 chr1 3980064 3980088 -238684265 + AT_rich Low_complexity Low_complexity 1 24 0 225 208 21 0 chr1 3981156 3981204 -238683149 + L2 LINE L2 3223 3271 -1 1969 154 0 3 chr1 3981354 3981653 -238682700 - AluJb SINE Alu -14 298 1 335 246 154 51 chr1 3982320 3982495 -238681858 + Charlie8 DNA MER1_type 77 269 -2148 797 128 0 38 chr1 3983182 3983315 -238681038 - FLAM_C SINE Alu 0 143 16 2232 102 0 7 chr1 3983832 3984135 -238680218 - AluSx SINE Alu -11 301 1 546 317 43 0 chr1 3984228 3984389 -238679964 - MIR SINE MIR -3 259 92 226 187 227 53 chr1 3984975 3985050 -238679303 + L1ME LINE L1 570 657 -5977 1675 112 73 15 chr1 3985053 3985312 -238679041 + AluSq SINE Alu 1 274 -39 349 278 115 27 chr1 3985313 3985580 -238678773 + L1ME LINE L1 1460 2198 -4447 402 270 80 58 chr1 3985587 3985607 -238678746 + L1ME LINE L1 2730 2748 -3896 2128 97 35 0 chr1 3985607 3985895 -238678458 + AluSq SINE Alu 1 298 -15 402 270 80 58 chr1 3985895 3985910 -238678443 + L1ME LINE L1 2748 2761 -3883 246 32 0 0 chr1 3985910 3985941 -238678412 + (CA)n Simple_repeat Simple_repeat 2 32 0 402 270 80 58 chr1 3985941 3986041 -238678312 + L1ME LINE L1 2761 2869 -3775 706 157 50 25 chr1 3986041 3986162 -238678191 - FRAM SINE Alu -15 161 38 1313 286 151 67 chr1 3986285 3987061 -238677292 - L2 LINE L2 -19 3294 2585 847 173 0 0 chr1 3987061 3987194 -238677159 + FLAM_C SINE Alu 1 133 0 1313 286 151 67 chr1 3987194 3987781 -238676572 - L2 LINE L2 -728 2585 1797 2424 57 3 0 chr1 3987781 3988078 -238676275 - AluY SINE Alu -13 298 1 1313 286 151 67 chr1 3988078 3988105 -238676248 - L2 LINE L2 -1516 1797 1774 1870 76 0 0 chr1 3988382 3988618 -238675735 - AluY SINE Alu -20 291 56 2145 102 10 20 chr1 3988632 3988937 -238675416 - AluSx SINE Alu -10 302 1 501 310 7 0 chr1 3989785 3989927 -238674426 + Charlie8 DNA MER1_type 78 220 -2197 274 291 172 0 chr1 3990849 3991000 -238673353 - MER5B DNA MER1_type 0 178 2 * 336 240 70 47 chr1 3991000 3991116 -238673237 + MER5B DNA MER1_type 60 178 0 941 183 56 10 chr1 3991380 3991577 -238672776 + AluJb SINE Alu 4 209 -103 2139 99 23 13 chr1 3991582 3991886 -238672467 - AluSq SINE Alu -6 307 1 315 191 16 0 chr1 3991893 3991956 -238672397 + Tigger5 DNA MER2_type 2260 2323 0 2298 95 10 0 chr1 3992041 3992347 -238672006 + AluSc SINE Alu 1 309 0 250 247 39 26 chr1 3992567 3992644 -238671709 - MER5A DNA MER1_type -1 188 111 2340 84 0 3 chr1 3992660 3992959 -238671394 - AluSx SINE Alu -14 298 1 2008 145 3 0 chr1 3992963 3993259 -238671094 - AluJb SINE Alu -15 297 1 751 236 36 0 chr1 3993507 3993672 -238670681 - AluJb SINE Alu -21 291 121 2257 60 35 0 chr1 3993689 3993972 -238670381 - AluY SINE Alu -18 293 1 1564 113 18 0 chr1 3994216 3994438 -238669915 - AluSg/x SINE Alu -15 297 72 1512 152 86 4 chr1 3994507 3994776 -238669577 + AluJb SINE Alu 3 293 -19 1609 210 0 0 chr1 3994798 3995093 -238669260 + AluJo SINE Alu 12 306 -6 2167 110 3 7 chr1 3995095 3995404 -238668949 + AluSx SINE Alu 1 308 -4 1449 112 0 40 chr1 3996934 3997157 -238667196 - AluSq SINE Alu -13 300 87 2282 66 0 62 chr1 3999280 3999600 -238664753 - AluSc SINE Alu -9 300 1 1704 136 54 4 chr1 4000044 4000323 -238664030 + AluSx SINE Alu 1 293 -19 2272 96 0 0 chr1 4000325 4000626 -238663727 + AluSg SINE Alu 1 301 -9 1082 227 103 22 chr1 4000626 4001100 -238663253 - MER114 LTR ERV -70 578 2 1385 171 0 113 chr1 4001100 4001428 -238662925 + AluJb SINE Alu 1 291 -21 445 232 92 109 chr1 4001531 4002092 -238662261 + MLT1H1 LTR MaLR 1 548 -1 2313 56 0 3 chr1 4002161 4002448 -238661905 - AluY SINE Alu -25 286 1 890 153 82 0 chr1 4002485 4002655 -238661698 - Tigger1 DNA MER2_type -491 1927 1744 601 290 55 21 chr1 4002662 4002952 -238661401 + HAL1 LINE L1 1880 2179 -328 505 258 31 25 chr1 4002994 4003153 -238661200 + HAL1 LINE L1 2346 2505 -2 1018 260 58 68 chr1 4003750 4003981 -238660372 + L2 LINE L2 2833 3065 -248 1920 127 3 7 chr1 4003981 4004273 -238660080 + AluSq SINE Alu 1 291 -22 2403 54 3 13 chr1 4004279 4004593 -238659760 + AluY SINE Alu 1 311 0 1018 260 58 68 chr1 4004593 4004665 -238659688 + L2 LINE L2 3070 3141 -172 2135 105 3 0 chr1 4004665 4004959 -238659394 - AluSx SINE Alu -17 295 1 1018 260 58 68 chr1 4004959 4005132 -238659221 + L2 LINE L2 3141 3312 -1 225 317 244 16 chr1 4005228 4005474 -238658879 - L3 LINE CR1 -756 821 520 398 271 37 0 chr1 4005529 4005636 -238658717 - L1MA9 LINE L1 -22 6290 6180 1043 109 0 152 chr1 4006454 4006684 -238657669 - AluJb SINE Alu -31 281 87 2006 100 0 0 chr1 4006696 4006967 -238657386 - AluSq SINE Alu -12 301 31 251 250 0 0 chr1 4006967 4007019 -238657334 + LTR30 LTR ERV1 1 52 -670 287 125 0 21 chr1 4007027 4007075 -238657278 + LTR12 LTR ERV1 138 184 -530 1402 82 11 149 chr1 4007075 4007343 -238657010 + LTR12 LTR ERV1 55 285 -429 352 212 35 0 chr1 4007344 4007429 -238656924 + LTR30 LTR ERV1 556 643 -79 633 135 42 0 chr1 4007429 4007525 -238656828 + LTR12 LTR ERV1 613 712 -2 230 194 0 0 chr1 4007525 4007561 -238656792 - AluSq SINE Alu -267 36 1 264 277 54 31 chr1 4008364 4008494 -238655859 - MIR SINE MIR -60 148 16 2449 66 3 0 chr1 4008736 4009041 -238655312 - AluY SINE Alu -5 306 1 1667 174 3 3 chr1 4009581 4009868 -238654485 - AluJo SINE Alu -21 291 5 2123 92 0 46 chr1 4010880 4011205 -238653148 - AluSx SINE Alu -2 310 1 2158 85 7 10 chr1 4012636 4012941 -238651412 - AluY SINE Alu -7 304 1 784 191 0 0 chr1 4013104 4013235 -238651118 - FLAM_C SINE Alu 0 133 3 2179 122 0 0 chr1 4013408 4013719 -238650634 + AluSx SINE Alu 1 311 -1 2153 81 0 11 chr1 4013731 4014081 -238650272 + AluSq SINE Alu 1 347 0 1807 76 0 20 chr1 4014460 4014711 -238649642 - AluY SINE Alu -15 296 51 204 40 0 0 chr1 4015697 4015722 -238648631 + (ATTTG)n Simple_repeat Simple_repeat 2 26 0 2222 73 21 0 chr1 4015753 4016039 -238648314 - AluY SINE Alu -19 292 1 1991 96 43 3 chr1 4016040 4016322 -238648031 - AluY SINE Alu -17 294 2 2058 144 0 0 chr1 4016326 4016638 -238647715 - AluSx SINE Alu 0 312 1 1783 117 7 4 chr1 4017456 4017729 -238646624 + AluSq SINE Alu 40 313 0 398 106 0 26 chr1 4017729 4017806 -238646547 + AluJ SINE Alu 68 130 -172 350 294 59 10 chr1 4017902 4018004 -238646349 + MIR3 SINE MIR 82 188 -20 1466 200 27 21 chr1 4018005 4018335 -238646018 - L1MD3 LINE L1 -6 7989 7658 2218 103 3 0 chr1 4018782 4019083 -238645270 + AluSx SINE Alu 1 302 -10 1023 156 6 0 chr1 4019083 4019243 -238645110 + AluJ SINE Alu 134 294 -18 1607 176 10 26 chr1 4019913 4020226 -238644127 - AluJb SINE Alu -4 308 1 497 230 197 0 chr1 4020704 4020891 -238643462 - Charlie8 DNA MER1_type -2131 286 40 1651 152 0 0 chr1 4020901 4021170 -238643183 + AluJo SINE Alu 1 269 -43 2031 89 62 7 chr1 4021395 4021687 -238642666 + AluSp SINE Alu 1 308 -5 1764 149 3 17 chr1 4021796 4022098 -238642255 - AluJo SINE Alu -12 300 3 265 340 21 7 chr1 4022159 4022293 -238642060 - MIR SINE MIR -64 144 20 273 242 55 117 chr1 4022619 4022747 -238641606 - MIR3 SINE MIR -39 169 50 1679 174 14 0 chr1 4023176 4023452 -238640901 - AluJo SINE Alu -32 280 1 25 0 0 0 chr1 4024684 4024709 -238639644 + AT_rich Low_complexity Low_complexity 1 25 0 922 121 27 0 chr1 4024709 4024858 -238639495 - L1MB4 LINE L1 -6 6174 6022 180 0 0 0 chr1 4026667 4026687 -238637666 + (A)n Simple_repeat Simple_repeat 1 20 0 1325 204 15 4 chr1 4027149 4027419 -238636934 + AluJb SINE Alu 1 273 -39 449 312 99 14 chr1 4027763 4027984 -238636369 + MIR SINE MIR 12 251 -11 336 287 73 30 chr1 4027972 4028136 -238636217 + MIR SINE MIR 90 260 -2 * 373 192 0 0 chr1 4028257 4028330 -238636023 + L1ME3A LINE L1 6090 6162 -8 2210 106 0 3 chr1 4028582 4028885 -238635468 - AluSx SINE Alu -10 302 1 485 246 9 0 chr1 4029379 4029489 -238634864 + L1M4 LINE L1 2718 2828 -3318 830 155 88 44 chr1 4029489 4029670 -238634683 + AluJo SINE Alu 1 189 -123 1823 196 64 41 chr1 4029738 4029912 -238634441 + Charlie1 DNA MER1_type 1 170 -2591 2200 158 136 2 chr1 4029912 4030330 -238634023 + MER101 LTR ERV1 1 474 0 1823 196 64 41 chr1 4030330 4030639 -238633714 + Charlie1 DNA MER1_type 170 495 -2266 635 97 35 53 chr1 4030609 4030723 -238633630 + Charlie1 DNA MER1_type 2618 2729 -32 * 278 170 38 0 chr1 4030825 4030878 -238633475 + Charlie1 DNA MER1_type 2707 2761 0 * 986 266 110 30 chr1 4030878 4031240 -238633113 - MLT1I LTR MaLR -16 393 3 2463 53 0 3 chr1 4031858 4032160 -238632193 - AluY SINE Alu -10 301 1 462 256 64 8 chr1 4033377 4033502 -238630851 - L2 LINE L2 -4 3268 3137 225 377 91 32 chr1 4033544 4033918 -238630435 - L2 LINE L2 -502 2812 2417 1879 88 55 4 chr1 4034019 4034293 -238630060 + AluSp SINE Alu 11 298 -15 312 294 69 0 chr1 4034473 4034575 -238629778 - MIR SINE MIR -66 196 88 288 311 198 6 chr1 4034837 4035004 -238629349 - MIR SINE MIR -43 219 21 1669 55 0 0 chr1 4035148 4035350 -238629003 + AluY SINE Alu 3 204 -107 2286 93 0 0 chr1 4037113 4037414 -238626939 - AluSp SINE Alu -12 301 1 1901 126 7 27 chr1 4037416 4037717 -238626636 - AluSx SINE Alu -17 295 1 2045 99 0 11 chr1 4037903 4038185 -238626168 - AluSg SINE Alu -31 279 1 23 0 0 0 chr1 4038185 4038208 -238626145 + AT_rich Low_complexity Low_complexity 1 23 0 612 198 0 0 chr1 4038221 4038322 -238626031 - FRAM SINE Alu -24 152 52 843 157 119 27 chr1 4038322 4038338 -238626015 + LTR36 LTR ERV1 3 16 -595 2019 119 13 3 chr1 4038338 4038640 -238625713 - AluSx SINE Alu -7 305 1 843 157 119 27 chr1 4038640 4038808 -238625545 + LTR36 LTR ERV1 16 204 -407 908 234 172 7 chr1 4038842 4039115 -238625238 + LTR36 LTR ERV1 294 611 0 21 0 0 0 chr1 4039166 4039187 -238625166 + AT_rich Low_complexity Low_complexity 1 21 0 2304 64 0 32 chr1 4039187 4039500 -238624853 + AluY SINE Alu 1 303 -8 1236 79 12 0 chr1 4039502 4039666 -238624687 + AluY SINE Alu 135 300 -11 747 141 0 62 chr1 4039666 4039794 -238624559 - AluJo/FLAM SINE Alu -182 130 11 187 298 35 114 chr1 4039854 4040013 -238624340 - MIR SINE MIR 0 262 129 1988 111 0 57 chr1 4040013 4040328 -238624025 + AluSg SINE Alu 1 297 -13 187 298 35 114 chr1 4040328 4040423 -238623930 - MIR SINE MIR -133 129 28 239 336 79 14 chr1 4040456 4040581 -238623772 - MIR SINE MIR -61 147 33 1758 123 38 131 chr1 4041828 4042195 -238622158 - MER1B DNA MER1_type -4 333 1 2185 47 54 0 chr1 4042313 4042592 -238621761 - AluY SINE Alu -17 294 1 27 29 0 0 chr1 4043129 4043163 -238621190 + AT_rich Low_complexity Low_complexity 1 34 0 1606 159 0 4 chr1 4043163 4043427 -238620926 + AluJb SINE Alu 1 263 -49 270 138 0 0 chr1 4043435 4043493 -238620860 + (TA)n Simple_repeat Simple_repeat 1 58 0 1625 159 35 3 chr1 4043527 4043817 -238620536 + AluJo SINE Alu 1 299 -13 924 57 0 16 chr1 4044147 4044269 -238620084 + L1PA8 LINE L1 6050 6169 -3 1450 156 62 127 chr1 4044434 4044915 -238619438 + LTR7 LTR ERV1 1 450 0 849 288 17 13 chr1 4044975 4045211 -238619142 + MIR SINE MIR 1 237 -25 1986 87 24 20 chr1 4046637 4046935 -238617418 - AluSx SINE Alu -13 299 1 2483 62 0 0 chr1 4047965 4048272 -238616081 - AluSg SINE Alu -3 307 1 2595 63 0 19 chr1 4048342 4048659 -238615694 - AluY SINE Alu 0 311 1 1828 180 6 3 chr1 4049165 4049476 -238614877 - AluJo SINE Alu 0 312 1 2236 133 0 0 chr1 4049676 4049978 -238614375 - AluSx SINE Alu -10 302 1 2228 112 0 3 chr1 4049980 4050275 -238614078 - AluSx SINE Alu -18 294 1 451 141 0 0 chr1 4050445 4050523 -238613830 - MER53 DNA DNA -1 188 111 1955 151 0 7 chr1 4050529 4050828 -238613525 + AluJb SINE Alu 1 297 -15 222 37 0 0 chr1 4050843 4050870 -238613483 + (CA)n Simple_repeat Simple_repeat 2 28 0 990 171 5 50 chr1 4050927 4051126 -238613227 - AluSg/x SINE Alu -1 309 120 1220 303 85 38 chr1 4052125 4052968 -238611385 - L2 LINE L2 -129 3184 2307 2037 92 100 0 chr1 4053010 4053281 -238611072 - AluSx SINE Alu -14 298 1 375 23 0 0 chr1 4053461 4053505 -238610848 + (TC)n Simple_repeat Simple_repeat 2 45 0 861 214 0 19 chr1 4053505 4053659 -238610694 - FRAM SINE Alu -15 151 1 418 318 8 29 chr1 4053846 4054091 -238610262 - L1MEc LINE L1 -4612 1784 1545 390 366 46 6 chr1 4054119 4054294 -238610059 - L1MEc LINE L1 -4971 1234 1053 2333 115 0 0 chr1 4054334 4054639 -238609714 + AluSx SINE Alu 2 306 -6 2107 137 38 47 chr1 4054640 4054796 -238609557 - MER65A LTR ERV1 0 445 289 2324 100 3 13 chr1 4054796 4055106 -238609247 + AluSx SINE Alu 5 311 -1 2107 137 38 47 chr1 4055106 4055393 -238608960 - MER65A LTR ERV1 -156 289 6 810 241 22 13 chr1 4055408 4055640 -238608713 - L1ME1 LINE L1 -26 6140 5907 626 250 158 45 chr1 4055652 4056056 -238608297 - HAL1 LINE L1 -676 1831 1382 2071 114 4 0 chr1 4056063 4056370 -238607983 - AluSx SINE Alu 0 308 1 2438 82 3 0 chr1 4056552 4056856 -238607497 - AluY SINE Alu -2 309 5 1036 203 31 8 chr1 4057167 4057423 -238606930 + MER44D DNA MER2_type 289 605 0 981 199 38 9 chr1 4057671 4057882 -238606471 - MLT1A2 LTR MaLR 0 374 158 1220 135 0 11 chr1 4057882 4058067 -238606286 - FRAM SINE Alu 0 176 1 1122 82 0 0 chr1 4058081 4058216 -238606137 + AluSq/x SINE Alu 1 135 -178 1766 156 61 10 chr1 4058216 4058511 -238605842 + AluJb SINE Alu 1 310 -2 549 236 159 13 chr1 4062197 4062354 -238601999 - MER5A DNA MER1_type -6 183 4 2967 63 15 5 chr1 4062537 4062934 -238601419 + MLT2A1 LTR ERVL 1 401 -43 243 109 16 31 chr1 4062934 4062998 -238601355 + (TA)n Simple_repeat Simple_repeat 1 63 0 1247 96 0 12 chr1 4063299 4063466 -238600887 + AluSp SINE Alu 149 313 0 633 237 37 93 chr1 4063989 4064053 -238600300 + MIR SINE MIR 47 113 -149 1920 161 3 3 chr1 4064053 4064357 -238599996 - AluJb SINE Alu -2 310 7 633 237 37 93 chr1 4064357 4064507 -238599846 + MIR SINE MIR 113 249 -13 1491 108 45 9 chr1 4064507 4064624 -238599729 + MER30 DNA MER1_type 1 112 -118 2217 119 7 0 chr1 4064624 4064918 -238599435 + AluSx SINE Alu 1 296 -16 1491 108 45 9 chr1 4064918 4065022 -238599331 + MER30 DNA MER1_type 112 230 0 228 35 0 0 chr1 4065217 4065246 -238599107 + (TA)n Simple_repeat Simple_repeat 1 29 0 229 56 111 0 chr1 4065246 4065282 -238599071 + MLT2A1 LTR ERVL 405 444 0 339 302 95 9 chr1 4065387 4065503 -238598850 + MIR3 SINE MIR 12 137 -71 2065 188 26 75 chr1 4065515 4065608 -238598745 + MLT1D LTR MaLR 1 97 -408 2346 116 3 0 chr1 4065608 4065919 -238598434 - AluSx SINE Alu 0 312 1 2065 188 26 75 chr1 4065919 4066356 -238597997 + MLT1D LTR MaLR 97 505 0 1923 128 52 3 chr1 4066400 4066688 -238597665 + AluSq SINE Alu 9 310 -3 396 0 0 0 chr1 4067148 4067192 -238597161 + (CA)n Simple_repeat Simple_repeat 1 44 0 760 189 0 24 chr1 4067204 4067331 -238597022 + FLAM_C SINE Alu 2 125 -18 4564 23 0 0 chr1 4067489 4067987 -238596366 + SVA Other Other 897 1394 0 25 0 0 0 chr1 4067987 4068012 -238596341 + AT_rich Low_complexity Low_complexity 1 25 0 2430 61 0 0 chr1 4068027 4068327 -238596026 + AluY SINE Alu 1 300 0 409 195 34 119 chr1 4068328 4068367 -238595986 - Tigger7 DNA MER2_type -622 111 70 1749 201 3 0 chr1 4068367 4068665 -238595688 - AluJo SINE Alu -13 299 1 409 195 34 119 chr1 4068665 4068743 -238595610 - Tigger7 DNA MER2_type -663 70 4 2200 126 10 0 chr1 4068878 4069187 -238595166 - AluSx SINE Alu 0 312 1 2574 47 0 3 chr1 4069197 4069496 -238594857 - AluY SINE Alu -13 298 1 384 284 13 52 chr1 4069619 4069774 -238594579 + HAL1 LINE L1 39 187 -2320 231 202 111 40 chr1 4069843 4069942 -238594411 + HAL1 LINE L1 349 454 -2053 513 263 145 63 chr1 4070421 4070631 -238593722 - HAL1 LINE L1 -428 2079 1831 1796 172 0 23 chr1 4070631 4070933 -238593420 - AluJo SINE Alu -17 295 1 513 263 145 63 chr1 4070933 4071053 -238593300 - HAL1 LINE L1 -676 1831 1722 2277 82 10 13 chr1 4071882 4072186 -238592167 + AluSq SINE Alu 1 303 -10 1793 150 56 3 chr1 4072211 4072497 -238591856 - AluSx SINE Alu -11 301 1 2424 89 0 3 chr1 4072781 4073085 -238591268 + AluSx SINE Alu 1 303 -9 217 262 49 0 chr1 4073652 4073713 -238590640 - MIR SINE MIR -99 109 46 1549 212 7 13 chr1 4073754 4074056 -238590297 + AluJo SINE Alu 1 300 -12 238 276 67 29 chr1 4074106 4074211 -238590142 + L2 LINE L2 2697 2805 -509 2284 105 0 29 chr1 4074224 4074539 -238589814 - AluSg SINE Alu -4 306 1 198 303 50 67 chr1 4074539 4074658 -238589695 - MIR SINE MIR -113 149 33 1617 118 0 0 chr1 4074864 4075085 -238589268 + AluSg/x SINE Alu 75 295 -15 380 277 8 116 chr1 4075097 4075267 -238589086 + L2 LINE L2 3075 3207 -106 2215 106 3 37 chr1 4075267 4075589 -238588764 + AluSx SINE Alu 1 311 -1 380 277 8 116 chr1 4075589 4075685 -238588668 + L2 LINE L2 3207 3312 -1 938 196 13 70 chr1 4075828 4076058 -238588295 + MER20 DNA MER1_type 1 217 -2 550 122 61 43 chr1 4076124 4076239 -238588114 + MLT1B LTR MaLR 1 117 -273 1205 143 0 6 chr1 4076240 4076415 -238587938 + AluSq SINE Alu 133 306 -7 277 81 0 0 chr1 4076419 4076456 -238587897 + MLT1B LTR MaLR 122 158 -232 2199 92 20 7 chr1 4076456 4076749 -238587604 - AluSx SINE Alu -15 297 1 1979 158 3 3 chr1 4076749 4077052 -238587301 - AluJb SINE Alu -9 303 1 1679 126 28 82 chr1 4077067 4077121 -238587232 - L1MB3 LINE L1 -7 6176 6121 2246 94 3 0 chr1 4077121 4077409 -238586944 - AluSp SINE Alu -19 294 6 1679 126 28 82 chr1 4077409 4077710 -238586643 - L1MB3 LINE L1 -62 6121 5840 2309 89 7 0 chr1 4077741 4078032 -238586321 + AluSx SINE Alu 3 295 -17 1892 164 0 19 chr1 4078055 4078366 -238585987 + AluJo SINE Alu 1 305 -7 2181 117 0 7 chr1 4079626 4079925 -238584428 + AluSx SINE Alu 1 297 -15 3449 130 29 4 chr1 4079983 4080538 -238583815 + LTR24B LTR ERV1 1 569 -7 528 134 67 148 chr1 4080693 4080842 -238583511 + THE1C LTR MaLR 1 137 -238 348 154 0 0 chr1 4080828 4080880 -238583473 - Alu SINE Alu -13 289 238 * 368 125 16 0 chr1 4080882 4080946 -238583407 + CT-rich Low_complexity Low_complexity 3 67 0 334 161 0 0 chr1 4080952 4081008 -238583345 - Alu SINE Alu 0 302 247 * 1414 135 38 4 chr1 4081005 4081242 -238583111 + THE1C LTR MaLR 131 375 0 649 200 4 109 chr1 4081368 4081598 -238582755 - L1MB7 LINE L1 -11 6173 5968 2217 96 0 4 chr1 4081699 4081979 -238582374 - AluSg SINE Alu -31 279 1 1080 71 0 57 chr1 4081989 4082130 -238582223 - AluSq/x SINE Alu -180 133 1 1971 141 13 13 chr1 4082220 4082526 -238581827 - AluJo SINE Alu -4 308 3 28 0 0 0 chr1 4083126 4083154 -238581199 + AT_rich Low_complexity Low_complexity 1 28 0 866 175 0 138 chr1 4083191 4083298 -238581055 - AluSx SINE Alu -100 212 156 2357 112 0 0 chr1 4083298 4083610 -238580743 - AluSx SINE Alu 0 312 1 866 175 0 138 chr1 4083610 4083748 -238580605 - AluSx SINE Alu -156 156 1 2071 71 26 15 chr1 4084217 4084485 -238579868 - AluSg SINE Alu -5 305 35 1230 217 110 35 chr1 4084538 4084967 -238579386 + MLT1C LTR MaLR 6 466 -1 2515 112 117 5 chr1 4085215 4085600 -238578753 - MSTA LTR MaLR 0 428 1 382 264 91 0 chr1 4086439 4086560 -238577793 + MER94 DNA DNA 3 134 0 2159 114 3 3 chr1 4086562 4086859 -238577494 - AluSx SINE Alu -15 297 1 612 194 8 8 chr1 4086941 4087070 -238577283 + L1MB3 LINE L1 6055 6183 0 1073 269 108 53 chr1 4087080 4087664 -238576689 + L2 LINE L2 2359 2974 -340 328 232 58 14 chr1 4087796 4087865 -238576488 - L1MC4 LINE L1 -1339 6703 6632 1457 138 29 72 chr1 4087871 4088147 -238576206 - AluJb SINE Alu -44 268 5 348 149 0 15 chr1 4088152 4088219 -238576134 + MLT1B LTR MaLR 324 389 -1 34 24 0 0 chr1 4088740 4088781 -238575572 + AT_rich Low_complexity Low_complexity 1 41 0 246 185 56 19 chr1 4090025 4090133 -238574220 + (TA)n Simple_repeat Simple_repeat 1 112 0 900 104 49 0 chr1 4090177 4090321 -238574032 + MLT1B LTR MaLR 29 179 -211 1930 152 7 0 chr1 4090321 4090630 -238573723 + AluJb SINE Alu 1 311 -1 2464 58 0 3 chr1 4091155 4091523 -238572830 - AluY SINE Alu 0 311 1 939 170 0 0 chr1 4091835 4091976 -238572377 + FRAM SINE Alu 4 144 -32 270 0 0 0 chr1 4091981 4092011 -238572342 + (CA)n Simple_repeat Simple_repeat 1 30 0 1075 105 0 0 chr1 4092184 4092317 -238572036 + AluSg SINE Alu 1 133 -177 1598 115 0 25 chr1 4092317 4092552 -238571801 + AluSx SINE Alu 1 229 -83 1109 192 28 17 chr1 4092708 4092999 -238571354 - L1M4 LINE L1 -845 5301 5008 524 131 20 20 chr1 4093004 4093103 -238571250 + LTR24B LTR ERV1 38 136 -440 386 160 117 0 chr1 4093103 4093197 -238571156 - L1M4 LINE L1 -1547 4599 4495 1887 156 0 22 chr1 4093209 4093523 -238570830 - AluJo SINE Alu -1 311 5 2344 109 0 0 chr1 4093533 4093845 -238570508 - AluSx SINE Alu 0 312 1 961 240 81 3 chr1 4093896 4094134 -238570219 - L1M4 LINE L1 -2378 3768 3499 390 21 0 0 chr1 4094134 4094181 -238570172 + (TG)n Simple_repeat Simple_repeat 2 48 0 961 240 81 3 chr1 4094181 4094250 -238570103 - L1M4 LINE L1 -2647 3499 3437 736 129 0 0 chr1 4094290 4094391 -238569962 - AluSg/x SINE Alu -23 286 186 1682 107 0 21 chr1 4094391 4094625 -238569728 + AluSx SINE Alu 1 229 -83 416 182 0 0 chr1 4094660 4094726 -238569627 - AluJ/FLAM SINE Alu -234 78 13 2659 32 3 13 chr1 4095667 4095981 -238568372 + AluY SINE Alu 1 311 0 1117 116 15 30 chr1 4096367 4096565 -238567788 - L1PA16 LINE L1 -1 6165 5971 1562 154 65 31 chr1 4096594 4096886 -238567467 - AluJo SINE Alu -10 302 1 1020 112 0 87 chr1 4096886 4097054 -238567299 - L1PA16 LINE L1 -182 5984 5834 1619 116 39 4 chr1 4097054 4097287 -238567066 + AluSx SINE Alu 58 298 -14 1020 112 0 87 chr1 4097287 4097314 -238567039 - L1PA16 LINE L1 -332 5834 5806 2315 105 3 10 chr1 4097408 4097722 -238566631 - AluSx SINE Alu 0 312 1 322 223 64 0 chr1 4098345 4098439 -238565914 + MLT1L LTR MaLR 503 602 -13 370 185 23 108 chr1 4098567 4098618 -238565735 + MER45A DNA AcHobo 58 112 -1469 1744 162 7 10 chr1 4098618 4098908 -238565445 - AluJo SINE Alu -12 300 12 370 185 23 108 chr1 4098908 4098986 -238565367 + MER45A DNA AcHobo 112 176 -2 942 130 0 0 chr1 4099342 4099496 -238564857 + (CA)n Simple_repeat Simple_repeat 1 154 0 1918 124 47 0 chr1 4099539 4099813 -238564540 + AluSx SINE Alu 1 287 -25 213 307 88 44 chr1 4099846 4099983 -238564370 + L2 LINE L2 3068 3210 -62 1231 180 12 16 chr1 4100393 4100643 -238563710 - AluJo SINE Alu -14 298 50 1972 100 3 3 chr1 4100748 4101047 -238563306 - AluSx SINE Alu -13 299 1 710 199 22 7 chr1 4101386 4101522 -238562831 + AluJo SINE Alu 2 139 -173 1506 183 0 24 chr1 4101523 4101652 -238562701 + AluJo SINE Alu 11 142 -170 2575 36 0 0 chr1 4101652 4101953 -238562400 + AluY SINE Alu 1 301 -10 1506 183 0 24 chr1 4101953 4102118 -238562235 + AluJo SINE Alu 142 298 -14 2235 94 3 0 chr1 4102206 4102504 -238561849 + AluSx SINE Alu 1 299 -13 1616 151 6 58 chr1 4102692 4102835 -238561518 + AluJb SINE Alu 1 124 -188 1808 134 4 7 chr1 4102835 4103143 -238561210 + AluSx SINE Alu 8 314 0 1616 151 6 58 chr1 4103143 4103308 -238561045 + AluJb SINE Alu 124 296 -16 2407 75 3 0 chr1 4103310 4103618 -238560735 + AluSp SINE Alu 1 309 -4 806 154 8 0 chr1 4104042 4104172 -238560181 - FLAM_C SINE Alu -8 135 5 2161 104 3 3 chr1 4104186 4104485 -238559868 - AluSx SINE Alu -13 299 1 472 158 0 13 chr1 4104485 4104561 -238559792 - MER5A DNA MER1_type -114 75 1 2221 81 0 26 chr1 4105085 4105393 -238558960 - AluY SINE Alu -11 300 1 483 153 31 61 chr1 4105393 4105491 -238558862 - AluJo/FLAM SINE Alu -185 127 33 1806 147 13 7 chr1 4105776 4106083 -238558270 - AluJb SINE Alu -3 309 1 3862 171 12 34 chr1 4106180 4106466 -238557887 - L1MB3 LINE L1 -8 6175 5884 1630 146 56 3 chr1 4106466 4106754 -238557599 - AluSq SINE Alu -9 304 2 3862 171 12 34 chr1 4106754 4107166 -238557187 - L1MB3 LINE L1 -299 5884 5491 1822 109 64 7 chr1 4107166 4107449 -238556904 - AluSx SINE Alu -13 299 1 3862 171 12 34 chr1 4107449 4107496 -238556857 - L1MB3 LINE L1 -692 5491 5445 490 290 6 33 chr1 4107914 4108006 -238556347 - MIR SINE MIR -71 191 105 2296 119 129 5 chr1 4108006 4108385 -238555968 + MSTA LTR MaLR 1 426 -2 490 290 6 33 chr1 4108385 4108475 -238555878 - MIR SINE MIR -157 105 14 238 274 65 65 chr1 4108548 4108701 -238555652 + L2 LINE L2 3161 3313 0 2058 119 0 0 chr1 4109072 4109365 -238554988 - AluSx SINE Alu -19 293 1 2078 96 27 7 chr1 4109376 4109668 -238554685 - AluSx SINE Alu -14 298 1 1602 186 0 38 chr1 4109899 4110216 -238554137 - AluJo SINE Alu -7 305 1 207 0 0 0 chr1 4110331 4110354 -238553999 + (T)n Simple_repeat Simple_repeat 1 23 0 228 315 95 0 chr1 4110718 4110827 -238553526 - MIR SINE MIR -29 179 59 2035 113 7 3 chr1 4111089 4111399 -238552954 + AluSq SINE Alu 1 311 -2 735 192 0 0 chr1 4111416 4111541 -238552812 + MLT1B LTR MaLR 266 390 0 31 44 0 0 chr1 4111560 4111605 -238552748 + AT_rich Low_complexity Low_complexity 1 45 0 905 171 0 0 chr1 4111605 4111757 -238552596 - FRAM SINE Alu -23 153 2 302 268 107 0 chr1 4111832 4111944 -238552409 - L2 LINE L2 0 3313 3190 2002 96 0 31 chr1 4112057 4112187 -238552166 + AluSx SINE Alu 5 137 -170 2610 32 0 10 chr1 4112187 4112501 -238551852 + AluY SINE Alu 1 311 0 2002 96 0 31 chr1 4112501 4112682 -238551671 + AluSx SINE Alu 137 307 0 1015 144 6 18 chr1 4112694 4112861 -238551492 + FRAM SINE Alu 1 165 -1 681 167 17 8 chr1 4113483 4113603 -238550750 + MER101 LTR ERV1 354 474 0 * 870 203 86 48 chr1 4113603 4113912 -238550441 + Charlie1 DNA MER1_type 175 495 -2266 628 119 32 63 chr1 4113882 4114008 -238550345 + Charlie1 DNA MER1_type 2618 2739 -22 * 278 170 38 0 chr1 4114077 4114130 -238550223 + Charlie1 DNA MER1_type 2707 2761 0 * 986 266 110 30 chr1 4114130 4114492 -238549861 - MLT1I LTR MaLR -16 393 3 2454 53 0 3 chr1 4115109 4115410 -238548943 - AluY SINE Alu -11 300 1 462 256 64 8 chr1 4116627 4116752 -238547601 - L2 LINE L2 -4 3268 3137 225 377 91 32 chr1 4116794 4117168 -238547185 - L2 LINE L2 -502 2812 2417 1895 84 55 4 chr1 4117269 4117543 -238546810 + AluSp SINE Alu 11 298 -15 312 294 69 0 chr1 4117723 4117825 -238546528 - MIR SINE MIR -66 196 88 288 311 198 6 chr1 4118087 4118254 -238546099 - MIR SINE MIR -43 219 21 1655 59 0 0 chr1 4118398 4118600 -238545753 + AluY SINE Alu 3 204 -107 2294 93 0 0 chr1 4120363 4120665 -238543688 - AluSp SINE Alu -11 302 1 1901 126 7 27 chr1 4120667 4120968 -238543385 - AluSx SINE Alu -17 295 1 2045 99 0 11 chr1 4121154 4121436 -238542917 - AluSg SINE Alu -31 279 1 23 0 0 0 chr1 4121436 4121459 -238542894 + AT_rich Low_complexity Low_complexity 1 23 0 612 198 0 0 chr1 4121472 4121573 -238542780 - FRAM SINE Alu -24 152 52 843 157 119 27 chr1 4121573 4121589 -238542764 + LTR36 LTR ERV1 3 16 -595 2027 119 13 3 chr1 4121589 4121892 -238542461 - AluSx SINE Alu -6 306 1 843 157 119 27 chr1 4121892 4122060 -238542293 + LTR36 LTR ERV1 16 204 -407 908 234 172 7 chr1 4122094 4122367 -238541986 + LTR36 LTR ERV1 294 611 0 21 0 0 0 chr1 4122418 4122439 -238541914 + AT_rich Low_complexity Low_complexity 1 21 0 2296 64 0 32 chr1 4122439 4122751 -238541602 + AluY SINE Alu 1 302 -9 1209 81 12 0 chr1 4122753 4122914 -238541439 + AluY SINE Alu 135 297 -14 739 142 0 63 chr1 4122914 4123041 -238541312 - AluJo/FLAM SINE Alu -183 129 11 187 298 35 114 chr1 4123101 4123260 -238541093 - MIR SINE MIR 0 262 129 2060 116 0 20 chr1 4123260 4123563 -238540790 + AluSg SINE Alu 1 297 -13 187 298 35 114 chr1 4123563 4123658 -238540695 - MIR SINE MIR -133 129 28 239 336 79 14 chr1 4123691 4123816 -238540537 - MIR SINE MIR -61 147 33 1758 123 38 131 chr1 4125063 4125430 -238538923 - MER1B DNA MER1_type -4 333 1 2199 43 54 0 chr1 4125548 4125827 -238538526 - AluY SINE Alu -17 294 1 1633 115 4 8 chr1 4126398 4126642 -238537711 + AluSq SINE Alu 1 243 -70 241 200 40 0 chr1 4126644 4126694 -238537659 + L2 LINE L2 2984 3035 -278 1695 157 23 7 chr1 4126694 4126999 -238537354 - AluJo SINE Alu -2 310 1 864 173 19 12 chr1 4127017 4127179 -238537174 - FRAM SINE Alu -13 163 1 639 246 68 85 chr1 4127179 4127242 -238537111 + L2 LINE L2 3020 3083 -230 1797 161 0 3 chr1 4127242 4127541 -238536812 + AluJo SINE Alu 1 298 -14 639 246 68 85 chr1 4127541 4127770 -238536583 + L2 LINE L2 3083 3307 -6 486 183 74 147 chr1 4127918 4128252 -238536101 + LTR37B LTR ERV1 118 459 -9 2139 84 7 0 chr1 4128261 4128547 -238535806 + AluSg SINE Alu 1 288 -22 1100 238 52 58 chr1 4128673 4129073 -238535280 + L2 LINE L2 2192 2589 -725 801 142 6 119 chr1 4129082 4129258 -238535095 + MER58A DNA MER1_type 47 202 -22 1676 176 97 54 chr1 4129267 4129380 -238534973 + MLT1D LTR MaLR 1 108 -397 1749 156 0 0 chr1 4129380 4129655 -238534698 + AluSx SINE Alu 1 275 -37 1676 176 97 54 chr1 4129655 4130024 -238534329 + MLT1D LTR MaLR 108 504 -1 961 246 120 32 chr1 4130024 4130417 -238533936 + L2 LINE L2 2578 2935 -378 2315 90 3 3 chr1 4130417 4130729 -238533624 + AluSx SINE Alu 1 312 0 961 246 120 32 chr1 4130729 4130949 -238533404 + L2 LINE L2 2935 3313 0 349 291 98 67 chr1 4130990 4131207 -238533146 - L1MC4a LINE L1 -1754 6054 5826 1641 128 26 49 chr1 4131207 4131511 -238532842 - AluSx SINE Alu -15 297 1 349 291 98 67 chr1 4131511 4131547 -238532806 - L1MC4a LINE L1 -1982 5826 5793 2030 104 0 35 chr1 4132156 4132474 -238531879 + AluSc SINE Alu 2 308 -1 1877 149 3 3 chr1 4132958 4133260 -238531093 - AluSx SINE Alu -10 302 1 440 110 41 0 chr1 4133501 4133574 -238530779 + L1MD1 LINE L1 6153 6228 -14 2055 111 3 3 chr1 4133720 4134017 -238530336 - AluSg SINE Alu -13 297 1 262 226 0 0 chr1 4134488 4134541 -238529812 - Charlie1b DNA MER1_type 0 523 471 2094 83 4 0 chr1 4134549 4134825 -238529528 + AluSg SINE Alu 1 277 -33 1044 168 96 0 chr1 4134827 4135035 -238529318 + AluJb SINE Alu 81 308 -4 1067 188 84 81 chr1 4135035 4135300 -238529053 - Charlie1b DNA MER1_type -2410 351 83 1686 168 7 0 chr1 4135300 4135585 -238528768 + AluJo SINE Alu 1 287 -25 1067 188 84 81 chr1 4135585 4135664 -238528689 - Charlie1b DNA MER1_type -2678 83 6 2190 93 3 0 chr1 4135879 4136170 -238528183 + AluSp SINE Alu 1 292 -21 1925 144 0 3 chr1 4136289 4136587 -238527766 - AluSq SINE Alu -16 297 1 995 261 24 31 chr1 4136706 4137046 -238527307 - L1MC4a LINE L1 -315 5806 5480 22 35 0 0 chr1 4137930 4137959 -238526394 + GC_rich Low_complexity Low_complexity 1 29 0 273 57 0 0 chr1 4141255 4141290 -238523063 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 254 235 0 0 chr1 4142775 4142826 -238521527 - L2 LINE L2 -2 3270 3220 2057 105 3 59 chr1 4142901 4143225 -238521128 - AluSx SINE Alu -6 306 1 306 0 0 0 chr1 4143472 4143506 -238520847 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr1 4144209 4144232 -238520121 + AT_rich Low_complexity Low_complexity 1 23 0 1931 109 48 14 chr1 4145060 4145354 -238518999 - AluSx SINE Alu -8 304 1 207 125 0 0 chr1 4147977 4148017 -238516336 + (T)n Simple_repeat Simple_repeat 1 40 0 1564 181 0 26 chr1 4148277 4148587 -238515766 - AluJo SINE Alu -10 302 1 1802 136 26 13 chr1 4149222 4149524 -238514829 - AluJb SINE Alu 0 312 7 1680 167 39 0 chr1 4150172 4150453 -238513900 - AluJb SINE Alu -20 292 1 2217 108 0 22 chr1 4150461 4150776 -238513577 - AluSx SINE Alu -1 311 4 33 43 0 0 chr1 4151009 4151056 -238513297 + AT_rich Low_complexity Low_complexity 1 47 0 2052 117 31 0 chr1 4151089 4151380 -238512973 - AluSq SINE Alu -13 300 1 955 133 106 0 chr1 4151526 4151677 -238512676 - AluY SINE Alu -12 299 133 2655 33 0 0 chr1 4151677 4151980 -238512373 - AluYb8 SINE Alu -7 311 9 27 62 0 0 chr1 4152130 4152178 -238512175 + AT_rich Low_complexity Low_complexity 1 48 0 1603 166 32 11 chr1 4152178 4152461 -238511892 - AluJo SINE Alu -23 289 1 221 286 0 32 chr1 4152710 4152773 -238511580 + L3 LINE CR1 1496 1556 -21 1017 132 86 17 chr1 4152793 4152967 -238511386 - MER44D DNA MER2_type -153 456 1 1941 143 0 16 chr1 4153215 4153522 -238510831 + AluJo SINE Alu 1 302 -10 615 159 62 0 chr1 4154661 4154774 -238509579 + L1MB3 LINE L1 6064 6183 0 1813 146 0 45 chr1 4155833 4156141 -238508212 - AluJb SINE Alu -18 294 1 1571 175 0 92 chr1 4156797 4156993 -238507360 - AluJo SINE Alu -5 307 153 1971 91 18 14 chr1 4156993 4157269 -238507084 + AluSq SINE Alu 1 277 -36 1571 175 0 92 chr1 4157269 4157410 -238506943 - AluJo SINE Alu -159 153 1 3403 199 15 71 chr1 4157432 4157830 -238506523 - L1ME1 LINE L1 -9 6157 5738 824 120 17 8 chr1 4157830 4157947 -238506406 - FLAM_C SINE Alu -15 118 1 3403 199 15 71 chr1 4157947 4158549 -238505804 - L1ME1 LINE L1 -428 5738 5224 3267 180 7 25 chr1 4158572 4158605 -238505748 - L1ME1 LINE L1 -922 5224 5192 1489 199 7 20 chr1 4158605 4158902 -238505451 - AluJb SINE Alu -19 293 1 3267 180 7 25 chr1 4158902 4159545 -238504808 - L1ME1 LINE L1 -954 5192 4560 21 36 0 0 chr1 4159922 4159950 -238504403 + AT_rich Low_complexity Low_complexity 1 28 0 300 202 394 0 chr1 4160034 4160133 -238504220 - L2 LINE L2 -1 3271 3134 2126 71 0 11 chr1 4160565 4160831 -238503522 + AluSc SINE Alu 35 297 -12 218 296 156 15 chr1 4161059 4161194 -238503159 - L2 LINE L2 -213 3059 2906 207 0 0 0 chr1 4161821 4161844 -238502509 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 220 242 208 17 chr1 4161962 4162082 -238502271 - L2 LINE L2 -804 2510 2368 2461 99 0 0 chr1 4162108 4162420 -238501933 - AluSq SINE Alu -1 312 1 315 184 19 48 chr1 4162546 4162649 -238501704 - LTR33 LTR ERVL -403 118 19 202 340 98 12 chr1 4162740 4162984 -238501369 - L2 LINE L2 -1138 2176 1912 1412 246 128 33 chr1 4163136 4163618 -238500735 - MLT1E LTR MaLR 0 593 53 2373 66 7 0 chr1 4163618 4163907 -238500446 + AluY SINE Alu 1 291 -20 1412 246 128 33 chr1 4163907 4163965 -238500388 - MLT1E LTR MaLR -540 53 2 198 245 38 0 chr1 4164281 4164334 -238500019 + MIR SINE MIR 158 212 -50 203 301 119 42 chr1 4165349 4165492 -238498861 + MIR SINE MIR 59 212 -50 212 152 76 0 chr1 4166430 4166496 -238497857 + (TTAA)n Simple_repeat Simple_repeat 3 73 0 1044 121 0 36 chr1 4166706 4166872 -238497481 - FRAM SINE Alu -9 167 8 216 326 22 33 chr1 4167078 4167170 -238497183 - L2 LINE L2 0 3313 3223 646 272 163 20 chr1 4167363 4167712 -238496641 + MLT1J2 LTR MaLR 1 399 -51 1893 165 3 0 chr1 4168300 4168597 -238495756 - AluJo SINE Alu -14 298 1 424 224 51 0 chr1 4168837 4168935 -238495418 + MER5A DNA MER1_type 4 106 -83 190 318 101 47 chr1 4169009 4169073 -238495280 - MIR3 SINE MIR -63 145 86 802 184 133 6 chr1 4169073 4169231 -238495122 - MER5B DNA MER1_type 0 178 1 190 318 101 47 chr1 4169231 4169295 -238495058 - MIR3 SINE MIR -122 86 10 561 247 93 16 chr1 4169351 4169545 -238494808 + L2 LINE L2 3104 3312 -1 953 209 6 0 chr1 4170732 4170890 -238493463 - FRAM SINE Alu -7 159 1 2244 120 0 0 chr1 4171151 4171460 -238492893 + AluSx SINE Alu 4 312 0 276 209 189 3 chr1 4171612 4171714 -238492639 - MIR SINE MIR -21 187 62 25 0 0 0 chr1 4171719 4171744 -238492609 + AT_rich Low_complexity Low_complexity 1 25 0 1733 177 0 7 chr1 4171744 4172026 -238492327 - AluJb SINE Alu -24 288 9 877 190 0 39 chr1 4172031 4172210 -238492143 - FRAM SINE Alu -3 173 2 1712 213 79 14 chr1 4172804 4173236 -238491117 - L1MC4 LINE L1 -149 7893 7434 303 195 149 15 chr1 4173418 4173507 -238490846 + MIR SINE MIR 34 118 -90 541 239 114 22 chr1 4173698 4173882 -238490471 + MIR SINE MIR 52 252 -10 405 39 0 0 chr1 4175888 4175939 -238488414 + (CA)n Simple_repeat Simple_repeat 1 51 0 408 262 112 15 chr1 4177015 4177164 -238487189 - MIR3 SINE MIR -27 181 11 242 201 69 90 chr1 4179990 4180134 -238484219 - Charlie7 DNA MER1_type -43 2569 2429 2490 82 0 0 chr1 4181380 4181683 -238482670 - AluSc SINE Alu -6 303 1 200 336 119 0 chr1 4181688 4181822 -238482531 - MIR SINE MIR -8 254 105 2094 128 0 19 chr1 4181984 4182296 -238482057 - AluSx SINE Alu -6 306 1 637 302 36 18 chr1 4182633 4182858 -238481495 - MIR SINE MIR -6 256 28 2386 75 0 25 chr1 4183118 4183437 -238480916 - AluY SINE Alu 0 311 1 2325 91 3 0 chr1 4183440 4183736 -238480617 - AluSx SINE Alu -15 297 1 575 183 15 44 chr1 4183744 4183881 -238480472 - L1ME1 LINE L1 -5 6161 6029 2450 87 0 0 chr1 4183900 4184211 -238480142 - AluY SINE Alu 0 311 1 23 0 0 0 chr1 4185122 4185145 -238479208 + AT_rich Low_complexity Low_complexity 1 23 0 1754 169 30 7 chr1 4185173 4185468 -238478885 - AluJb SINE Alu -8 304 3 207 0 0 0 chr1 4186113 4186136 -238478217 + (CAG)n Simple_repeat Simple_repeat 1 23 0 285 268 49 12 chr1 4186350 4186432 -238477921 + L2 LINE L2 3228 3312 -1 294 292 73 0 chr1 4187014 4187110 -238477243 + MIR SINE MIR 20 122 -86 23 33 0 0 chr1 4187235 4187265 -238477088 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr1 4187314 4187340 -238477013 + AT_rich Low_complexity Low_complexity 1 26 0 185 95 0 48 chr1 4187340 4187382 -238476971 + (TTTTTA)n Simple_repeat Simple_repeat 1 40 0 1744 154 10 20 chr1 4187731 4188024 -238476329 - AluJo SINE Alu -14 298 9 510 138 0 12 chr1 4188035 4188115 -238476238 - L1MB7 LINE L1 -66 6118 6040 867 146 7 0 chr1 4188566 4188710 -238475643 - MER5A DNA MER1_type -1 188 44 273 210 0 0 chr1 4189132 4189194 -238475159 + (CCTA)n Simple_repeat Simple_repeat 2 63 0 273 196 0 0 chr1 4189667 4189723 -238474630 + (TG)n Simple_repeat Simple_repeat 1 56 0 2184 64 13 60 chr1 4190034 4190348 -238474005 - AluY SINE Alu -11 300 2 21 0 0 0 chr1 4190778 4190799 -238473554 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 4190861 4190896 -238473457 + AT_rich Low_complexity Low_complexity 1 35 0 288 264 0 66 chr1 4191004 4191110 -238473243 + L2 LINE L2 3127 3225 -88 1286 164 56 0 chr1 4191867 4192135 -238472218 - AluJo SINE Alu -29 283 1 2305 95 10 3 chr1 4192179 4192485 -238471868 + AluSg SINE Alu 1 308 -2 1335 255 182 29 chr1 4192518 4192996 -238471357 - L2 LINE L2 0 3313 2910 2316 82 7 0 chr1 4192996 4193287 -238471066 + AluSq SINE Alu 1 293 -20 1335 255 182 29 chr1 4193287 4193945 -238470408 - L2 LINE L2 -403 2910 1991 1918 210 30 48 chr1 4193962 4194461 -238469892 - MLT1D LTR MaLR -15 490 1 441 338 69 9 chr1 4194471 4194702 -238469651 - L2 LINE L2 -1343 1971 1727 620 244 29 17 chr1 4195464 4195636 -238468717 + MER5B DNA MER1_type 3 176 -2 2289 104 0 13 chr1 4195716 4196032 -238468321 + AluSx SINE Alu 1 312 0 185 298 60 36 chr1 4196350 4196434 -238467919 - L3 LINE CR1 -28 1549 1464 1494 121 0 0 chr1 4196658 4196857 -238467496 - AluSx SINE Alu -113 199 1 937 239 99 16 chr1 4196919 4197457 -238466896 + L1ME3A LINE L1 5437 6165 -2 1678 157 3 59 chr1 4197468 4197792 -238466561 + AluJb SINE Alu 1 306 -6 272 242 0 55 chr1 4197803 4197894 -238466459 + L1ME LINE L1 5779 5864 -306 2085 265 91 12 chr1 4197978 4198540 -238465813 - MLT2E LTR ERVL -2 626 21 596 130 100 0 chr1 4198552 4198652 -238465701 + L1MB7 LINE L1 6069 6178 -6 2243 127 38 0 chr1 4198904 4199243 -238465110 - THE1B LTR MaLR 0 364 13 1565 136 0 8 chr1 4199344 4199580 -238464773 + AluSg/x SINE Alu 65 298 -14 1912 206 24 12 chr1 4199603 4200026 -238464327 + L1MB8 LINE L1 5751 6178 0 285 268 0 0 chr1 4200859 4200997 -238463356 + (CA)n Simple_repeat Simple_repeat 2 139 0 228 67 0 0 chr1 4203385 4203415 -238460938 + (T)n Simple_repeat Simple_repeat 1 30 0 2196 62 72 10 chr1 4203799 4204090 -238460263 + AluSg SINE Alu 1 309 -1 517 339 190 10 chr1 4206041 4206792 -238457561 + L2 LINE L2 2406 3270 -43 180 179 60 60 chr1 4207944 4208028 -238456325 - L2 LINE L2 -294 2978 2895 2438 89 0 0 chr1 4209072 4209376 -238454977 + AluY SINE Alu 1 304 -7 369 109 0 0 chr1 4210338 4210393 -238453960 + (CA)n Simple_repeat Simple_repeat 2 56 0 2713 253 71 66 chr1 4211305 4212653 -238451700 + L1ME1 LINE L1 4200 5550 -616 2072 120 17 10 chr1 4212653 4212931 -238451422 + AluSx SINE Alu 2 284 -28 306 0 0 0 chr1 4212931 4212965 -238451388 + (CA)n Simple_repeat Simple_repeat 1 34 0 2072 120 17 10 chr1 4212965 4212987 -238451366 + AluSx SINE Alu 284 304 -8 2713 253 71 66 chr1 4212987 4213568 -238450785 + L1ME1 LINE L1 5550 6127 -39 2602 213 129 14 chr1 4213558 4214301 -238450052 + L1ME2 LINE L1 5335 6163 -1 * 217 350 63 14 chr1 4214780 4214923 -238449430 + L2 LINE L2 2154 2303 -1011 310 307 161 37 chr1 4214995 4215425 -238448928 + L2 LINE L2 1796 2278 -1036 1753 133 3 117 chr1 4215432 4215784 -238448569 - AluJo SINE Alu 0 312 1 2315 121 0 3 chr1 4216073 4216386 -238447967 - AluSq SINE Alu -1 312 1 202 186 0 34 chr1 4222858 4222917 -238441436 + CT-rich Low_complexity Low_complexity 3 59 0 224 269 76 48 chr1 4224433 4224482 -238439871 + MIR3 SINE MIR 35 81 -127 2572 98 0 14 chr1 4224482 4224851 -238439502 - THE1B LTR MaLR 0 364 1 224 269 76 48 chr1 4224851 4224966 -238439387 + MIR3 SINE MIR 81 208 0 39 22 0 0 chr1 4226676 4226722 -238437631 + AT_rich Low_complexity Low_complexity 1 46 0 2291 104 0 0 chr1 4226735 4227024 -238437329 - AluSx SINE Alu -23 289 1 3189 105 2 25 chr1 4227024 4227538 -238436815 - L1MA2 LINE L1 -25 6279 5776 390 348 12 6 chr1 4227571 4227732 -238436621 + MIR SINE MIR 53 214 -48 2229 97 0 32 chr1 4227736 4228044 -238436309 + AluSc SINE Alu 1 298 -11 2744 82 0 0 chr1 4228254 4228618 -238435735 - THE1B LTR MaLR 0 364 1 1614 226 18 28 chr1 4229352 4229746 -238434607 + L1MB8 LINE L1 5784 6173 -5 181 330 17 51 chr1 4230185 4230303 -238434050 + MIR SINE MIR 34 147 -115 2845 186 3 42 chr1 4231697 4232224 -238432129 + L1MB1 LINE L1 5602 6105 -63 2309 131 0 0 chr1 4232224 4232537 -238431816 + AluSq SINE Alu 1 313 0 2845 186 3 42 chr1 4232537 4232599 -238431754 + L1MB1 LINE L1 6105 6168 0 204 299 51 34 chr1 4232789 4232906 -238431447 + L2 LINE L2 3150 3268 -4 25 65 0 0 chr1 4235205 4235251 -238429102 + AT_rich Low_complexity Low_complexity 1 46 0 583 266 57 11 chr1 4235254 4235431 -238428922 + L1MD2 LINE L1 5948 6132 -227 263 291 74 20 chr1 4235441 4235589 -238428764 + L1MD1 LINE L1 6079 6234 -8 191 167 241 0 chr1 4235731 4235785 -238428568 - MIR SINE MIR -89 173 107 359 250 205 0 chr1 4236796 4236908 -238427445 + L2 LINE L2 3179 3313 0 2306 119 3 0 chr1 4238114 4238416 -238425937 - AluSx SINE Alu -9 303 1 2097 127 10 0 chr1 4239549 4239849 -238424504 - AluSq SINE Alu -10 303 1 208 342 43 17 chr1 4242069 4242186 -238422167 - L2 LINE L2 -10 3262 3143 476 309 62 65 chr1 4242225 4242643 -238421710 - L2 LINE L2 -1 3271 2855 413 305 224 25 chr1 4242836 4243197 -238421156 - L2 LINE L2 -652 2662 2230 2274 108 28 19 chr1 4245060 4245421 -238418932 - THE1B LTR MaLR 0 364 1 10784 103 9 15 chr1 4245421 4247010 -238417343 - THE1B-int LTR MaLR 0 1580 1 2301 107 19 25 chr1 4247010 4247376 -238416977 - THE1B LTR MaLR 0 364 1 204 235 73 0 chr1 4247665 4247733 -238416620 - MIR SINE MIR -117 145 73 865 261 154 30 chr1 4247743 4248244 -238416109 - MLT1F1 LTR MaLR 0 567 5 505 290 14 0 chr1 4249558 4249696 -238414657 - L2 LINE L2 -1 3312 3173 214 319 139 28 chr1 4251458 4251602 -238412751 + MIR SINE MIR 67 226 -36 997 177 19 18 chr1 4251735 4252157 -238412196 + CT-rich Low_complexity Low_complexity 1 600 0 1825 175 0 28 chr1 4252164 4252484 -238411869 - AluJo SINE Alu -1 311 1 26 0 0 0 chr1 4252490 4252516 -238411837 + AT_rich Low_complexity Low_complexity 1 26 0 1379 176 59 0 chr1 4252516 4252637 -238411716 - AluJo SINE Alu -59 253 141 186 43 0 0 chr1 4252637 4252660 -238411693 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1379 176 59 0 chr1 4252660 4252777 -238411576 - AluJo SINE Alu -171 141 1 2474 211 54 6 chr1 4252777 4253294 -238411059 - MER119 DNA MER1_type -40 543 2 314 315 56 15 chr1 4254057 4254254 -238410099 + L2 LINE L2 2863 3067 -246 248 240 0 125 chr1 4254296 4254400 -238409953 + L2 LINE L2 3195 3285 -28 24 0 0 0 chr1 4254445 4254469 -238409884 + AT_rich Low_complexity Low_complexity 1 24 0 2203 120 0 22 chr1 4254609 4254790 -238409563 - AluSg SINE Alu 0 310 127 213 65 0 0 chr1 4254790 4254821 -238409532 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2326 60 3 3 chr1 4254821 4255104 -238409249 - AluY SINE Alu -28 283 1 2203 120 0 22 chr1 4255104 4255238 -238409115 - AluSg SINE Alu -181 129 1 180 97 0 0 chr1 4255533 4255564 -238408789 + L2 LINE L2 2929 2959 -313 279 329 0 0 chr1 4257033 4257118 -238407235 - MIR SINE MIR -86 176 92 589 164 136 21 chr1 4257456 4257471 -238406882 - L1MA10 LINE L1 -1 6333 6319 1198 213 79 30 chr1 4257471 4257799 -238406554 - L1ME1 LINE L1 -5 6161 5818 621 215 7 56 chr1 4258131 4258275 -238406078 - MER31B LTR ERV1 -329 137 1 1563 138 0 4 chr1 4258458 4258697 -238405656 - AluSx SINE Alu -14 298 61 180 224 90 15 chr1 4258912 4258979 -238405374 - L2 LINE L2 -453 2861 2790 1816 145 24 27 chr1 4258991 4259160 -238405193 - AluSx SINE Alu -12 300 131 2125 106 3 33 chr1 4259160 4259463 -238404890 - AluSg SINE Alu -16 294 1 1816 145 24 27 chr1 4259463 4259589 -238404764 - AluSx SINE Alu -181 131 6 1185 210 80 25 chr1 4259615 4259901 -238404452 - AluJo SINE Alu 0 302 1 272 242 114 40 chr1 4260129 4260278 -238404075 - MER34 LTR ERV1 -15 527 368 243 235 0 0 chr1 4260538 4260589 -238403764 - MER34 LTR ERV1 -467 75 25 2283 122 0 0 chr1 4261205 4261509 -238402844 + AluSx SINE Alu 1 304 -8 243 253 116 11 chr1 4261515 4261610 -238402743 + L1 LINE L1 4954 5058 -1088 298 313 62 24 chr1 4262793 4263001 -238401352 + L1MEc LINE L1 1309 1524 -5039 970 148 0 0 chr1 4263049 4263184 -238401169 + AluSq/x SINE Alu 1 135 -177 2051 144 7 0 chr1 4263184 4263482 -238400871 + AluSx SINE Alu 1 300 -12 295 285 87 48 chr1 4263482 4263689 -238400664 + L1MEc LINE L1 1475 1689 -4695 2381 237 98 40 chr1 4263735 4264503 -238399850 - MER21B LTR ERV1 -51 812 1 1040 275 98 38 chr1 4264668 4265519 -238398834 + L1MEc LINE L1 2042 2886 -3496 621 199 66 29 chr1 4265552 4265688 -238398665 + Tigger3(Golem) DNA MER2_type 3 143 -2886 * 1140 174 36 101 chr1 4265684 4265960 -238398393 + Tigger3(Golem) DNA MER2_type 2781 3038 0 428 258 97 0 chr1 4266011 4266135 -238398218 + L1MEc LINE L1 2887 3022 -3360 1338 255 70 22 chr1 4266151 4266653 -238397700 + L1MEc LINE L1 4063 4588 -1794 1582 245 21 89 chr1 4266674 4266704 -238397649 - LTR41 LTR ERVL -7 766 736 2705 128 16 16 chr1 4266704 4267132 -238397221 - MSTA LTR MaLR 0 428 1 1582 245 21 89 chr1 4267132 4267660 -238396693 - LTR41 LTR ERVL -37 736 246 197 439 46 0 chr1 4267811 4267941 -238396412 - L2 LINE L2 -3 3269 3134 193 208 57 19 chr1 4267938 4267991 -238396362 - L2 LINE L2 -18 3254 3200 * 255 164 0 49 chr1 4267991 4268052 -238396301 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 415 336 79 19 chr1 4268283 4268815 -238395538 - L2 LINE L2 -339 2975 2412 294 263 113 8 chr1 4269121 4269254 -238395099 - L2 LINE L2 0 3313 3167 548 190 58 16 chr1 4269378 4269499 -238394854 + L2 LINE L2 3188 3313 0 270 0 0 0 chr1 4269893 4269923 -238394430 + (TGG)n Simple_repeat Simple_repeat 3 32 0 1812 165 7 3 chr1 4270958 4271261 -238393092 + AluJo SINE Alu 1 304 -8 398 284 76 42 chr1 4271271 4271535 -238392818 - L1MC/D LINE L1 -2252 5556 5284 2233 125 0 6 chr1 4272078 4272390 -238391963 + AluSx SINE Alu 1 310 -2 2060 120 31 0 chr1 4272415 4272706 -238391647 - AluSx SINE Alu -12 300 1 2364 146 90 19 chr1 4273160 4273409 -238390944 - L1MB3 LINE L1 -2 6181 5951 2257 102 0 32 chr1 4273409 4273723 -238390630 - AluSx SINE Alu -8 304 1 2364 146 90 19 chr1 4273723 4273939 -238390414 - L1MB3 LINE L1 -232 5951 5683 1461 154 63 75 chr1 4274459 4274791 -238389562 - L1MA9 LINE L1 -5 6307 5980 266 330 134 8 chr1 4274801 4275062 -238389291 + L2 LINE L2 2154 2447 -867 2776 172 60 14 chr1 4275075 4275646 -238388707 - L1MC3 LINE L1 -2 7783 7187 509 320 93 29 chr1 4275666 4276109 -238388244 + L2 LINE L2 2497 2967 -347 214 250 40 13 chr1 4276334 4276410 -238387943 + L2 LINE L2 3235 3312 -1 812 143 0 8 chr1 4276437 4276556 -238387797 - FLAM_C SINE Alu -25 118 1 520 310 16 22 chr1 4277113 4277297 -238387056 - MIR SINE MIR -33 229 47 223 335 37 69 chr1 4277599 4277787 -238386566 + MER5A DNA MER1_type 8 189 0 445 231 89 13 chr1 4278503 4278675 -238385678 - L1MA10 LINE L1 -2 6332 5986 26 30 0 0 chr1 4279190 4279223 -238385130 + AT_rich Low_complexity Low_complexity 1 33 0 1634 147 16 60 chr1 4279247 4279561 -238384792 - AluJo SINE Alu -12 300 1 506 123 0 0 chr1 4279681 4279754 -238384599 + AluSg/x SINE Alu 201 273 -36 306 0 0 0 chr1 4279771 4279805 -238384548 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 24 32 0 0 chr1 4283292 4283323 -238381030 + AT_rich Low_complexity Low_complexity 1 31 0 303 28 0 0 chr1 4283668 4283704 -238380649 + (CCA)n Simple_repeat Simple_repeat 3 38 0 22 0 0 0 chr1 4284693 4284715 -238379638 + AT_rich Low_complexity Low_complexity 1 22 0 779 231 32 19 chr1 4285316 4285532 -238378821 + MIR SINE MIR 16 234 -28 371 266 63 19 chr1 4286049 4286207 -238378146 - MIR SINE MIR -51 211 47 2060 99 34 14 chr1 4286340 4286634 -238377719 - AluSg SINE Alu -10 300 1 196 214 0 54 chr1 4286761 4286817 -238377536 + MER5B DNA MER1_type 1 53 -125 272 263 0 42 chr1 4287195 4287290 -238377063 + T-rich Low_complexity Low_complexity 3 93 0 2145 121 0 3 chr1 4287415 4287712 -238376641 - AluSq SINE Alu -17 296 1 1670 135 37 80 chr1 4290648 4290974 -238373379 - AluJo SINE Alu 0 312 1 1214 192 77 27 chr1 4291123 4291420 -238372933 - AluJo SINE Alu 0 312 1 1973 157 7 3 chr1 4291430 4291735 -238372618 - AluJb SINE Alu -6 306 1 382 225 73 73 chr1 4291836 4291987 -238372366 - L2 LINE L2 0 3313 3163 790 239 113 13 chr1 4291990 4292228 -238372125 - MIR SINE MIR 0 262 1 1381 255 122 84 chr1 4292397 4292729 -238371624 - L2 LINE L2 -277 3036 2718 2008 134 0 3 chr1 4292729 4293041 -238371312 + AluSg SINE Alu 1 311 0 1381 255 122 84 chr1 4293041 4293077 -238371276 - L2 LINE L2 -595 2718 2685 1387 218 65 12 chr1 4293077 4293398 -238370955 + MER58B DNA MER1_type 4 341 0 1381 255 122 84 chr1 4293398 4294003 -238370350 - L2 LINE L2 -628 2685 1999 1600 142 13 0 chr1 4294003 4294235 -238370118 - AluSx SINE Alu -75 237 3 1381 255 122 84 chr1 4294235 4294431 -238369922 - L2 LINE L2 -1314 1999 1812 613 238 145 26 chr1 4294494 4294805 -238369548 - L2 LINE L2 -2165 1149 802 687 209 150 38 chr1 4294810 4295097 -238369256 - MER33 DNA MER1_type -4 320 2 405 0 0 0 chr1 4295335 4295380 -238368973 + (CA)n Simple_repeat Simple_repeat 2 46 0 448 193 101 0 chr1 4299127 4299246 -238365107 + L2 LINE L2 3180 3310 -3 207 100 0 0 chr1 4299850 4299880 -238364473 + (T)n Simple_repeat Simple_repeat 1 30 0 1619 185 7 23 chr1 4301606 4301914 -238362439 - AluJo SINE Alu -9 303 1 223 294 24 32 chr1 4303104 4303230 -238361123 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 211 293 0 0 chr1 4304057 4304115 -238360238 + G-rich Low_complexity Low_complexity 1 58 0 311 250 10 31 chr1 4305180 4305276 -238359077 + LTR67 LTR ERVL 459 552 -5 811 211 29 29 chr1 4305430 4305634 -238358719 + MIR SINE MIR 39 242 -20 438 322 49 83 chr1 4305689 4305953 -238358400 - L2 LINE L2 -18 3254 3000 587 267 78 0 chr1 4306339 4306542 -238357811 + MIR SINE MIR 25 250 -12 2119 194 25 75 chr1 4308628 4309159 -238355194 + MLT1D LTR MaLR 1 504 -1 188 220 80 0 chr1 4311800 4311850 -238352503 + MIR SINE MIR 81 134 -128 198 0 0 0 chr1 4312305 4312327 -238352026 + (GCTG)n Simple_repeat Simple_repeat 3 24 0 704 287 77 28 chr1 4313311 4313597 -238350756 + L1ME4a LINE L1 5794 6093 -28 2111 107 0 3 chr1 4313598 4313898 -238350455 - AluSx SINE Alu -2 310 12 26 30 0 0 chr1 4313940 4313973 -238350380 + AT_rich Low_complexity Low_complexity 1 33 0 2478 64 0 3 chr1 4313999 4314311 -238350042 - AluY SINE Alu 0 311 1 233 325 0 38 chr1 4314883 4314963 -238349390 - MIR SINE MIR -70 192 116 571 295 52 10 chr1 4314981 4315174 -238349179 - MIR SINE MIR -13 249 49 303 216 144 31 chr1 4315901 4315998 -238348355 + MLT1I LTR MaLR 294 401 -8 256 359 54 12 chr1 4316430 4316597 -238347756 + MIR SINE MIR 24 197 -65 223 319 121 14 chr1 4316600 4316741 -238347612 + MIR3 SINE MIR 17 172 -36 * 290 342 17 25 chr1 4316733 4316853 -238347500 - MIR SINE MIR -68 140 22 392 316 16 1 chr1 4317619 4317764 -238346589 + MIR SINE MIR 9 153 -62 327 254 16 56 chr1 4317889 4318015 -238346338 + MIR SINE MIR 94 214 -48 358 216 0 0 chr1 4318283 4318357 -238345996 + MIR SINE MIR 89 162 -100 4263 196 67 38 chr1 4318390 4318778 -238345575 + L1MB8 LINE L1 4105 4480 -1698 1896 112 10 26 chr1 4318778 4319082 -238345271 + AluSx SINE Alu 1 299 -13 4263 196 67 38 chr1 4319082 4319978 -238344375 + L1MB8 LINE L1 4480 5348 -830 1516 176 27 23 chr1 4319978 4320279 -238344074 + AluJo SINE Alu 11 312 0 4263 196 67 38 chr1 4320279 4320814 -238343539 + L1MB8 LINE L1 5348 5992 -186 1851 135 35 0 chr1 4320814 4321102 -238343251 + AluJb SINE Alu 1 298 -14 4263 196 67 38 chr1 4321102 4321295 -238343058 + L1MB8 LINE L1 5992 6178 0 439 229 97 21 chr1 4321297 4321441 -238342912 - L2 LINE L2 0 3313 3159 810 205 36 6 chr1 4321448 4321614 -238342739 - Tigger5 DNA MER2_type 0 2323 2153 653 155 17 9 chr1 4321606 4321722 -238342631 - Tigger5 DNA MER2_type -2206 117 1 * 429 253 136 86 chr1 4321722 4322130 -238342223 - L2 LINE L2 -160 3153 2708 2548 166 52 14 chr1 4322130 4322582 -238341771 + L1MB3 LINE L1 5682 6155 -28 2390 77 3 3 chr1 4322582 4322892 -238341461 - AluSg SINE Alu 0 310 1 2548 166 52 14 chr1 4322892 4322921 -238341432 + L1MB3 LINE L1 6155 6181 -2 429 253 136 86 chr1 4322921 4323011 -238341342 - L2 LINE L2 -605 2708 2624 204 254 0 0 chr1 4323234 4323293 -238341060 + GA-rich Low_complexity Low_complexity 4 62 0 1825 126 23 23 chr1 4323770 4324071 -238340282 - AluJo SINE Alu 0 312 12 30 45 0 0 chr1 4324191 4324235 -238340118 + AT_rich Low_complexity Low_complexity 1 44 0 186 133 0 0 chr1 4324370 4324400 -238339953 + (A)n Simple_repeat Simple_repeat 1 30 0 357 253 22 11 chr1 4324893 4324984 -238339369 + LTR16C LTR ERVL 388 479 -12 198 293 37 0 chr1 4325301 4325383 -238338970 + MIR3 SINE MIR 4 88 -120 2038 218 118 4 chr1 4325874 4326341 -238338012 + MLT2B1 LTR ERVL 1 520 0 238 103 0 0 chr1 4326456 4326495 -238337858 - L2 LINE L2 -93 3179 3141 405 276 55 0 chr1 4326508 4326635 -238337718 - L2 LINE L2 0 3313 3180 195 294 44 0 chr1 4327408 4327476 -238336877 + L2 LINE L2 3234 3304 -9 196 325 158 0 chr1 4328416 4328530 -238335823 + MIR SINE MIR 118 249 -13 983 101 0 57 chr1 4328539 4329034 -238335319 + (ATGGTG)n Simple_repeat Simple_repeat 1 647 0 740 86 27 54 chr1 4329045 4329270 -238335083 + (ATGGTG)n Simple_repeat Simple_repeat 1 218 0 736 113 16 48 chr1 4329281 4329467 -238334886 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 2356 74 0 0 chr1 4329493 4329789 -238334564 - AluY SINE Alu -11 300 5 244 313 111 14 chr1 4330543 4330687 -238333666 + MIR3 SINE MIR 33 190 -18 205 119 48 0 chr1 4331799 4331841 -238332512 + G-rich Low_complexity Low_complexity 4 47 0 2737 188 52 72 chr1 4332463 4332941 -238331412 + L1ME LINE L1 4589 5075 -1091 1885 129 56 0 chr1 4332941 4333227 -238331126 + AluSx SINE Alu 1 302 -10 2737 188 52 72 chr1 4333227 4333277 -238331076 + L1ME LINE L1 5075 5124 -1042 775 196 144 7 chr1 4333277 4333430 -238330923 + FAM SINE Alu 1 174 -1 2737 188 52 72 chr1 4333430 4334043 -238330310 + L1ME LINE L1 5124 5713 -453 222 37 0 0 chr1 4384788 4384815 -238279538 + (CA)n Simple_repeat Simple_repeat 1 27 0 1033 338 43 20 chr1 4385394 4386099 -238278254 + L1MEc LINE L1 344 1064 -5657 619 279 56 41 chr1 4386113 4386270 -238278083 + L1MEc LINE L1 1564 1717 -4823 2114 130 7 7 chr1 4386270 4386569 -238277784 - AluSx SINE Alu -12 300 2 619 279 56 41 chr1 4386569 4386752 -238277601 + L1MEc LINE L1 1717 1909 -4631 358 246 16 25 chr1 4386761 4386883 -238277470 + L1ME1 LINE L1 6040 6160 -6 249 242 0 29 chr1 4386959 4387027 -238277326 - MIR SINE MIR -64 144 78 1599 110 0 0 chr1 4387329 4387549 -238276804 - AluSg/x SINE Alu 0 303 84 313 250 16 80 chr1 4387559 4387747 -238276606 - LTR41 LTR ERVL -1 772 597 205 211 0 0 chr1 4388004 4388042 -238276311 + (TAA)n Simple_repeat Simple_repeat 2 39 0 516 213 0 43 chr1 4388095 4388236 -238276117 - LTR41 LTR ERVL -638 135 1 737 274 99 16 chr1 4388418 4388732 -238275621 - MER102b DNA MER1_type -1 340 1 1950 158 0 0 chr1 4388953 4389238 -238275115 + AluSx SINE Alu 1 285 -27 468 0 0 0 chr1 4389238 4389290 -238275063 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 354 330 99 42 chr1 4389468 4389823 -238274530 + L2 LINE L2 2897 3271 -1 21 0 0 0 chr1 4390455 4390476 -238273877 + AT_rich Low_complexity Low_complexity 1 21 0 240 185 0 0 chr1 4390946 4391000 -238273353 + (TA)n Simple_repeat Simple_repeat 2 55 0 576 201 112 99 chr1 4391535 4391784 -238272569 + MER33 DNA MER1_type 5 260 -2325 1090 81 0 7 chr1 4391784 4391932 -238272421 - L1PA8 LINE L1 -4 6168 6022 576 201 112 99 chr1 4391932 4391996 -238272357 + MER33 DNA MER1_type 260 322 -2 2193 211 65 0 chr1 4393224 4393717 -238270636 - L1MB5 LINE L1 0 6174 5650 291 280 144 8 chr1 4393798 4393916 -238270437 + MIR3 SINE MIR 26 159 -49 824 241 59 15 chr1 4394372 4394575 -238269778 + MIR SINE MIR 13 224 -38 214 244 0 0 chr1 4395292 4395333 -238269020 + L2 LINE L2 3227 3267 -5 417 302 82 21 chr1 4395989 4396162 -238268191 - MIR SINE MIR -78 130 3 513 0 0 0 chr1 4396330 4396387 -238267966 + (CATCC)n Simple_repeat Simple_repeat 4 60 0 345 298 76 105 chr1 4396394 4396736 -238267617 - L2 LINE L2 -3 3269 2938 478 303 14 66 chr1 4399443 4399809 -238264544 - MLT1I LTR MaLR 0 409 63 787 184 69 17 chr1 4399947 4400121 -238264232 - MER5A DNA MER1_type -6 183 1 347 301 46 85 chr1 4400546 4400741 -238263612 + MIR SINE MIR 9 190 -42 608 294 96 65 chr1 4401744 4402098 -238262255 + L2 LINE L2 2948 3312 -1 209 409 27 9 chr1 4402270 4402380 -238261973 - MIR SINE MIR -142 120 9 1792 157 56 14 chr1 4404470 4404826 -238259527 + L1MB3 LINE L1 5813 6183 0 288 200 0 0 chr1 4404897 4404957 -238259396 + (TG)n Simple_repeat Simple_repeat 1 60 0 2065 112 7 7 chr1 4405862 4406148 -238258205 - AluSx SINE Alu -26 286 1 753 218 99 36 chr1 4406156 4406408 -238257945 - HAL1 LINE L1 0 2507 2240 736 312 42 45 chr1 4406493 4407134 -238257219 - HAL1 LINE L1 -1800 707 69 258 358 0 16 chr1 4408441 4408564 -238255789 + (CA)n Simple_repeat Simple_repeat 2 122 0 * 349 302 22 33 chr1 4408521 4408703 -238255650 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 * 458 305 23 11 chr1 4408578 4408755 -238255598 + (CA)n Simple_repeat Simple_repeat 2 180 0 506 133 11 0 chr1 4408778 4408868 -238255485 + (CA)n Simple_repeat Simple_repeat 2 92 0 342 279 0 23 chr1 4409710 4409796 -238254557 - L2 LINE L2 -5 3267 3184 183 172 0 0 chr1 4410078 4410107 -238254246 - MIR SINE MIR -119 143 115 600 172 20 26 chr1 4410139 4410483 -238253870 + (CA)n Simple_repeat Simple_repeat 1 342 0 546 202 26 16 chr1 4410512 4411059 -238253294 + (CA)n Simple_repeat Simple_repeat 1 552 0 308 189 14 0 chr1 4411116 4411190 -238253163 + (CA)n Simple_repeat Simple_repeat 2 76 0 2030 134 14 3 chr1 4412458 4412749 -238251604 + AluJb SINE Alu 1 294 -18 299 264 14 14 chr1 4413037 4413185 -238251168 + GA-rich Low_complexity Low_complexity 1 148 0 493 211 18 18 chr1 4413232 4413341 -238251012 - MIR SINE MIR -55 153 45 266 258 72 62 chr1 4413876 4413973 -238250380 - L2 LINE L2 -6 3266 3169 372 94 0 0 chr1 4414047 4414100 -238250253 + (TG)n Simple_repeat Simple_repeat 1 53 0 634 232 24 0 chr1 4414794 4414958 -238249395 + MER20 DNA MER1_type 31 198 -21 559 232 153 23 chr1 4415000 4415177 -238249176 + MIR SINE MIR 32 231 -31 211 288 23 53 chr1 4415352 4415484 -238248869 - L2 LINE L2 -1242 2072 1945 1665 241 84 44 chr1 4415531 4416100 -238248253 - MLT1E LTR MaLR -1 592 1 280 305 11 12 chr1 4416156 4416269 -238248084 + MIR3 SINE MIR 40 156 -52 472 250 40 27 chr1 4416299 4416447 -238247906 - MER117 DNA MER1_type -47 150 1 1756 214 35 46 chr1 4417665 4418146 -238246207 - MLT1D LTR MaLR -22 483 8 255 244 73 146 chr1 4418253 4418401 -238245952 + MIR SINE MIR 18 148 -114 2299 120 0 0 chr1 4418401 4418710 -238245643 + AluY SINE Alu 1 309 -2 255 244 73 146 chr1 4418710 4418766 -238245587 + MIR SINE MIR 148 207 -55 333 250 139 9 chr1 4419224 4419332 -238245021 - MIR SINE MIR -109 153 32 1204 193 4 66 chr1 4421057 4421103 -238243250 - MLT2B1 LTR ERVL 0 520 473 204 40 0 0 chr1 4421103 4421128 -238243225 + (TG)n Simple_repeat Simple_repeat 2 26 0 1204 193 4 66 chr1 4421128 4421146 -238243207 - MLT2B1 LTR ERVL -47 473 455 1615 87 31 26 chr1 4421146 4421375 -238242978 + MER30 DNA MER1_type 1 230 0 1204 193 4 66 chr1 4421375 4421627 -238242726 - MLT2B1 LTR ERVL -65 455 267 595 231 8 0 chr1 4421595 4421872 -238242481 - MLT2B1 LTR ERVL -123 397 267 * 595 231 8 0 chr1 4421840 4422117 -238242236 - MLT2B1 LTR ERVL -123 397 267 595 231 8 0 chr1 4422085 4422215 -238242138 - MLT2B1 LTR ERVL -123 397 267 595 231 8 0 chr1 4422183 4422313 -238242040 - MLT2B1 LTR ERVL -123 397 267 * 1167 228 29 87 chr1 4422281 4422853 -238241500 - MLT2B1 LTR ERVL -112 442 1 2555 48 10 16 chr1 4423436 4423749 -238240604 - AluY SINE Alu 0 311 1 2335 82 7 7 chr1 4423775 4424068 -238240285 - AluSq SINE Alu -20 293 1 277 229 165 28 chr1 4424248 4424357 -238239996 + MER63 DNA MER1_type 6 755 -81 1258 152 13 45 chr1 4425088 4425312 -238239041 - AluJo SINE Alu -10 302 86 685 237 36 16 chr1 4426571 4426765 -238237588 - MER105 DNA DNA 0 204 7 648 217 84 7 chr1 4426783 4426926 -238237427 - MIR SINE MIR -72 190 37 1872 253 69 23 chr1 4426928 4427494 -238236859 - MLT1E LTR MaLR -1 592 1 271 323 122 0 chr1 4429613 4429842 -238234511 + L2 LINE L2 2553 2809 -505 939 220 59 84 chr1 4429898 4430289 -238234064 - MLT1B LTR MaLR -6 384 4 261 119 0 0 chr1 4432085 4432127 -238232226 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 422 302 82 62 chr1 4432138 4432542 -238231811 - L2 LINE L2 -25 3247 2836 1834 169 52 33 chr1 4432682 4433050 -238231303 - THE1C LTR MaLR 0 375 1 2462 80 3 0 chr1 4433566 4433866 -238230487 - AluY SINE Alu -10 301 1 207 0 0 0 chr1 4434045 4434068 -238230285 + (T)n Simple_repeat Simple_repeat 1 23 0 2368 180 32 31 chr1 4434636 4435159 -238229194 + MER68 LTR ERV1 38 561 -1 429 271 181 12 chr1 4435159 4435404 -238228949 - L2 LINE L2 -253 3060 2773 1248 112 12 0 chr1 4435457 4435618 -238228735 - AluSg/x SINE Alu -15 295 133 2228 128 10 0 chr1 4435629 4435935 -238228418 - AluSx SINE Alu -3 309 1 233 240 190 50 chr1 4435935 4436035 -238228318 - MIR SINE MIR -114 148 35 325 228 0 87 chr1 4436325 4436417 -238227936 + MIR SINE MIR 78 161 -101 2403 236 33 72 chr1 4436433 4436711 -238227642 - L1ME1 LINE L1 -4 6231 5944 324 0 0 0 chr1 4436717 4436753 -238227600 + (TG)n Simple_repeat Simple_repeat 1 36 0 2089 131 0 7 chr1 4436753 4437036 -238227317 - AluSx SINE Alu -29 283 1 2403 236 33 72 chr1 4437036 4437748 -238226605 - L1ME1 LINE L1 -291 5944 5206 2536 76 0 0 chr1 4437748 4438049 -238226304 - AluSc SINE Alu -8 301 1 2403 236 33 72 chr1 4438049 4438571 -238225782 - L1ME1 LINE L1 -1029 5206 4665 2092 91 18 0 chr1 4438571 4438845 -238225508 + AluSx SINE Alu 1 279 -33 285 29 0 0 chr1 4438846 4438880 -238225473 + (CA)n Simple_repeat Simple_repeat 2 35 0 2403 236 33 72 chr1 4438880 4439063 -238225290 - L1ME1 LINE L1 -1569 4666 4606 1391 142 0 10 chr1 4439091 4439288 -238225065 - AluJo SINE Alu -33 279 85 566 188 0 0 chr1 4439362 4439458 -238224895 + AluJ/FLAM SINE Alu 2 97 -215 533 261 8 0 chr1 4439464 4439594 -238224759 - L1MD3 LINE L1 -68 7927 7797 2014 266 58 9 chr1 4439597 4440344 -238224009 - L1ME1 LINE L1 -2185 4030 3248 432 222 98 39 chr1 4440340 4440493 -238223860 - L1ME1 LINE L1 -6216 180 19 * 365 250 34 11 chr1 4440538 4440626 -238223727 + L2 LINE L2 348 437 -2877 2780 129 13 22 chr1 4440703 4441081 -238223272 - L1PA16 LINE L1 -11 6155 5780 1769 158 46 23 chr1 4441081 4441266 -238223087 - AluJb SINE Alu -1 311 115 189 0 0 0 chr1 4441266 4441287 -238223066 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1769 158 46 23 chr1 4441287 4441405 -238222948 - AluJb SINE Alu -197 115 1 2780 129 13 22 chr1 4441405 4441475 -238222878 - L1PA16 LINE L1 -386 5780 5711 555 144 0 0 chr1 4441483 4441573 -238222780 + L1PA16 LINE L1 5623 5712 -454 1996 141 10 10 chr1 4441598 4441902 -238222451 + L1P4 LINE L1 5183 5488 -678 2344 115 0 3 chr1 4441902 4442215 -238222138 + AluSq SINE Alu 1 312 -1 1996 141 10 10 chr1 4442215 4442322 -238222031 + L1P4 LINE L1 5488 5593 -573 959 263 13 52 chr1 4442322 4442630 -238221723 + L2 LINE L2 428 723 -2591 331 228 22 0 chr1 4442643 4442735 -238221618 - MLT1J1 LTR MaLR -8 438 345 2913 288 149 18 chr1 4442739 4444102 -238220251 + L2 LINE L2 1089 2629 -685 593 323 138 14 chr1 4444231 4444774 -238219579 + L2 LINE L2 1153 1627 -1686 2080 140 0 19 chr1 4444774 4445089 -238219264 - AluJo SINE Alu -3 309 1 593 323 138 14 chr1 4445089 4445107 -238219246 + L2 LINE L2 1627 3309 -4 2173 128 0 0 chr1 4445511 4445799 -238218554 + AluSx SINE Alu 2 289 -23 208 135 0 0 chr1 4445799 4445836 -238218517 + (TA)n Simple_repeat Simple_repeat 1 37 0 365 266 121 62 chr1 4445838 4446094 -238218259 - L1MC5 LINE L1 -119 7842 7572 310 289 46 64 chr1 4445962 4446135 -238218218 + L1MCa LINE L1 1907 2076 -4350 * 29 28 0 0 chr1 4446141 4446177 -238218176 + AT_rich Low_complexity Low_complexity 1 36 0 691 245 84 88 chr1 4446750 4447011 -238217342 - MIR SINE MIR 0 262 3 24 0 0 0 chr1 4447534 4447558 -238216795 + AT_rich Low_complexity Low_complexity 1 24 0 187 326 0 0 chr1 4448454 4448500 -238215853 + L2 LINE L2 3211 3256 -16 * 217 262 0 0 chr1 4448468 4448510 -238215843 + MIR SINE MIR 221 262 0 310 304 32 16 chr1 4448650 4448775 -238215578 - MIR3 SINE MIR -21 187 61 2246 147 70 29 chr1 4449259 4449674 -238214679 + MSTB1 LTR MaLR 1 432 0 1491 188 35 48 chr1 4450855 4451034 -238213319 - MLT1B LTR MaLR -16 374 194 390 108 0 0 chr1 4451034 4451099 -238213254 + (TG)n Simple_repeat Simple_repeat 1 65 0 1491 188 35 48 chr1 4451099 4451292 -238213061 - MLT1B LTR MaLR -196 194 7 262 275 117 25 chr1 4451667 4451787 -238212566 - MIR SINE MIR -71 191 61 296 327 30 0 chr1 4452687 4452788 -238211565 + MIR SINE MIR 47 150 -112 261 283 0 0 chr1 4452816 4452876 -238211477 - MIR SINE MIR 0 262 203 284 219 38 6 chr1 4453519 4453679 -238210674 + (CA)n Simple_repeat Simple_repeat 1 165 0 497 236 16 39 chr1 4453695 4453877 -238210476 + (CA)n Simple_repeat Simple_repeat 1 178 0 290 219 22 17 chr1 4453900 4453936 -238210417 + (CA)n Simple_repeat Simple_repeat 1 35 -144 2502 73 0 13 chr1 4453936 4454237 -238210116 + AluY SINE Alu 1 297 -14 290 219 22 17 chr1 4454237 4454378 -238209975 + (CA)n Simple_repeat Simple_repeat 35 179 0 390 196 32 6 chr1 4454394 4454552 -238209801 + (CA)n Simple_repeat Simple_repeat 1 162 0 417 204 36 0 chr1 4454596 4454763 -238209590 + (CA)n Simple_repeat Simple_repeat 1 173 0 397 199 29 14 chr1 4454799 4455076 -238209277 + (CA)n Simple_repeat Simple_repeat 1 281 0 234 89 36 18 chr1 4455120 4455176 -238209177 + (CA)n Simple_repeat Simple_repeat 1 57 0 874 219 80 0 chr1 4457272 4457459 -238206894 - MER20 DNA MER1_type -17 202 1 180 345 54 24 chr1 4460680 4460848 -238203505 + MIR3 SINE MIR 4 176 -32 1191 151 10 0 chr1 4462328 4462520 -238201833 - AluJb SINE Alu -110 202 9 393 338 17 79 chr1 4462688 4462771 -238201582 - L2 LINE L2 -1 3271 3184 1724 111 12 80 chr1 4462771 4463095 -238201258 + AluSq SINE Alu 4 305 -8 393 338 17 79 chr1 4463095 4463301 -238201052 - L2 LINE L2 -88 3184 3000 2362 74 0 6 chr1 4463859 4464171 -238200182 + AluY SINE Alu 1 310 -1 2626 232 32 41 chr1 4464264 4464675 -238199678 + L1ME2 LINE L1 5412 5814 -350 2454 53 0 0 chr1 4464675 4464974 -238199379 + AluY SINE Alu 1 299 -12 2626 232 32 41 chr1 4464974 4465312 -238199041 + L1ME2 LINE L1 5814 6154 -10 332 223 25 122 chr1 4465373 4465570 -238198783 + L1MC4 LINE L1 7864 8041 -1 189 298 0 0 chr1 4465674 4465721 -238198632 + L3 LINE CR1 370 416 -1161 1726 159 13 29 chr1 4466331 4466646 -238197707 - AluJo SINE Alu -2 310 1 210 211 0 0 chr1 4466712 4466750 -238197603 + MIR SINE MIR 211 248 -14 1826 129 42 11 chr1 4466762 4467048 -238197305 + AluSq SINE Alu 1 295 -18 632 333 134 19 chr1 4467179 4468165 -238196188 + L2 LINE L2 1895 3056 -216 640 316 73 29 chr1 4468171 4468202 -238196151 - L2 LINE L2 -1 3312 3284 2212 130 41 36 chr1 4468202 4468564 -238195789 + THE1B LTR MaLR 1 364 0 640 316 73 29 chr1 4468564 4469089 -238195264 - L2 LINE L2 -29 3284 2724 2951 210 19 26 chr1 4469099 4469724 -238194629 - L1MB8 LINE L1 -20 6158 5538 200 234 94 0 chr1 4469755 4469819 -238194534 - L2 LINE L2 -618 2696 2627 730 331 131 21 chr1 4469860 4470633 -238193720 - L2 LINE L2 -2270 1044 187 325 302 71 39 chr1 4470644 4470826 -238193527 + L2 LINE L2 3124 3311 -2 2117 122 0 0 chr1 4472225 4472529 -238191824 - AluSx SINE Alu -8 304 1 2333 72 0 0 chr1 4472871 4473163 -238191190 - AluY SINE Alu -19 292 1 292 301 77 42 chr1 4473178 4473321 -238191032 - L1M1 LINE L1 -658 5647 5500 1642 250 117 101 chr1 4473329 4473606 -238190747 - L1MB8 LINE L1 -732 5432 5161 2125 110 0 10 chr1 4473606 4473906 -238190447 - AluSx SINE Alu -13 299 3 1642 250 117 101 chr1 4473906 4474519 -238189834 - L1MB8 LINE L1 -1003 5161 4559 246 62 0 0 chr1 4474529 4474561 -238189792 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1705 152 46 7 chr1 4474561 4474833 -238189520 - AluJo SINE Alu -26 286 1 1642 250 117 101 chr1 4474833 4475192 -238189161 - L1MB8 LINE L1 -1605 4559 4207 2072 109 0 3 chr1 4475192 4475500 -238188853 - AluSx SINE Alu 0 308 2 1642 250 117 101 chr1 4475500 4476312 -238188041 - L1MB8 LINE L1 -1957 4207 3409 1677 131 16 74 chr1 4476312 4476624 -238187729 - AluSx SINE Alu -18 294 1 1642 250 117 101 chr1 4476624 4477095 -238187258 - L1MB8 LINE L1 -2755 3409 2848 3543 60 2 0 chr1 4477095 4477541 -238186812 - L1PA8 LINE L1 0 6172 5726 1642 250 117 101 chr1 4477541 4477889 -238186464 - L1MB8 LINE L1 -3316 2848 2507 213 160 67 143 chr1 4478113 4478232 -238186121 + L2 LINE L2 2926 3035 -237 217 272 99 25 chr1 4478239 4478320 -238186033 + L2 LINE L2 3222 3308 -5 2089 201 23 12 chr1 4478400 4478832 -238185521 - L1MB5 LINE L1 -6 6168 5732 2118 105 10 0 chr1 4478951 4479247 -238185106 - AluSq SINE Alu -14 299 1 1982 129 3 3 chr1 4480191 4480485 -238183868 - AluSp SINE Alu -19 294 1 23 0 0 0 chr1 4480491 4480514 -238183839 + AT_rich Low_complexity Low_complexity 1 23 0 261 83 0 0 chr1 4481841 4481877 -238182476 + (TG)n Simple_repeat Simple_repeat 2 37 0 657 222 13 20 chr1 4483623 4483776 -238180577 - MLT1J2 LTR MaLR -263 187 36 2551 304 87 25 chr1 4486012 4486882 -238177471 + L1MC4a LINE L1 2432 3246 -2900 2027 108 31 0 chr1 4486882 4487168 -238177185 + AluSq SINE Alu 1 295 -18 2551 304 87 25 chr1 4487168 4487309 -238177044 + L1MC4a LINE L1 3246 3377 -2769 1700 177 20 0 chr1 4487309 4487609 -238176744 - AluJb SINE Alu -6 306 1 2551 304 87 25 chr1 4487609 4489055 -238175298 + L1MC4a LINE L1 3377 5044 -1102 1029 184 192 16 chr1 4489056 4489311 -238175042 + AluY SINE Alu 1 300 -11 2193 232 83 36 chr1 4489314 4489800 -238174553 + L1MC4a LINE L1 5039 5090 -1056 2067 174 76 2 chr1 4489800 4490197 -238174156 - MSTB LTR MaLR 0 426 1 2193 232 83 36 chr1 4490197 4490527 -238173826 + L1MC4a LINE L1 5090 5403 -743 326 264 181 19 chr1 4490530 4490685 -238173668 + L1ME1 LINE L1 5982 6161 -5 3827 95 39 0 chr1 4490751 4491317 -238173036 + L1MA2 LINE L1 5717 6304 0 2462 231 85 37 chr1 4491325 4492278 -238172075 + L1MC4a LINE L1 5925 6923 -885 2386 167 119 101 chr1 4492336 4493115 -238171238 + L1MC4 LINE L1 7262 8042 0 220 271 84 19 chr1 4493117 4493224 -238171129 + MIR SINE MIR 143 256 -6 262 230 81 14 chr1 4493338 4493412 -238170941 + MIR SINE MIR 23 101 -107 211 192 77 19 chr1 4493509 4493561 -238170792 - L2 LINE L2 0 3313 3259 234 207 103 0 chr1 4494031 4494089 -238170264 + MER5C DNA MER1_type 27 90 -234 23 33 0 0 chr1 4494390 4494420 -238169933 + AT_rich Low_complexity Low_complexity 1 30 0 2122 111 54 40 chr1 4494692 4495062 -238169291 - THE1C LTR MaLR 0 375 1 3733 183 24 6 chr1 4495095 4495818 -238168535 - L1MB3 LINE L1 -7 6176 5441 525 245 31 33 chr1 4495945 4496170 -238168183 + L1MC4a LINE L1 5670 5897 -224 6185 98 10 9 chr1 4496193 4497087 -238167266 + L1PB1 LINE L1 5256 6150 -1 235 258 10 31 chr1 4497131 4497228 -238167125 + (TATATG)n Simple_repeat Simple_repeat 1 95 0 479 264 104 12 chr1 4497564 4497727 -238166626 - MIR SINE MIR -15 247 70 296 218 158 45 chr1 4498678 4498811 -238165542 + MIR3 SINE MIR 33 180 -28 324 289 132 0 chr1 4499491 4499605 -238164748 - MIR SINE MIR -87 175 47 2127 91 3 7 chr1 4499866 4500164 -238164189 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr1 4501190 4501220 -238163133 + AT_rich Low_complexity Low_complexity 1 30 0 428 325 54 30 chr1 4502007 4502302 -238162051 + MLT1I LTR MaLR 42 343 -66 2128 105 7 0 chr1 4502534 4502828 -238161525 + AluSx SINE Alu 1 296 -16 1675 136 213 28 chr1 4502832 4503193 -238161160 + MSTA LTR MaLR 1 428 0 450 0 0 0 chr1 4504426 4504476 -238159877 + (CA)n Simple_repeat Simple_repeat 1 50 0 300 268 115 38 chr1 4504477 4504634 -238159719 - MIR SINE MIR -47 215 47 397 298 55 38 chr1 4505346 4505581 -238158772 + L2 LINE L2 2818 3056 -257 421 300 43 43 chr1 4505705 4505935 -238158418 + L2 LINE L2 3083 3312 -1 244 174 0 212 chr1 4506692 4506824 -238157529 - L1ME2 LINE L1 -167 5997 5894 2673 168 61 99 chr1 4506834 4507668 -238156685 - L1MC4 LINE L1 0 8042 7241 11125 208 45 29 chr1 4507673 4510615 -238153738 - L1MB7 LINE L1 -1 6183 3289 2402 56 0 28 chr1 4510615 4510935 -238153418 - AluY SINE Alu 0 311 1 11125 208 45 29 chr1 4510935 4511561 -238152792 - L1MB7 LINE L1 -2895 3289 2674 237 65 0 0 chr1 4511561 4511592 -238152761 + (TTA)n Simple_repeat Simple_repeat 2 32 0 11125 208 45 29 chr1 4511592 4511615 -238152738 - L1MB7 LINE L1 -3510 2674 2653 2365 77 3 3 chr1 4511615 4511926 -238152427 - AluY SINE Alu 0 311 1 1826 131 18 0 chr1 4511926 4512200 -238152153 - AluSq SINE Alu -34 279 1 11125 208 45 29 chr1 4512200 4512487 -238151866 - L1MB7 LINE L1 -3530 2654 2237 1023 281 93 24 chr1 4512481 4513243 -238151110 - L1M4 LINE L1 -963 5183 4369 * 500 234 45 7 chr1 4513321 4513475 -238150878 - L1ME2 LINE L1 -284 5886 5727 349 292 42 14 chr1 4513478 4513622 -238150731 - L1ME2 LINE L1 -574 5590 5443 275 273 50 72 chr1 4513942 4514081 -238150272 - L2 LINE L2 -10 3262 3127 203 268 18 0 chr1 4515046 4515102 -238149251 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 186 187 55 143 chr1 4515222 4515313 -238149040 + L2 LINE L2 3140 3222 -91 4398 191 48 66 chr1 4516609 4517771 -238146582 - L1MD3 LINE L1 0 8041 6914 372 317 32 68 chr1 4517780 4518001 -238146352 - L1MC4 LINE L1 -1 8041 7829 1271 237 12 36 chr1 4518049 4518382 -238145971 - L1ME2 LINE L1 -19 6145 5821 * 2283 220 106 82 chr1 4518381 4519334 -238145019 - L1MC4a LINE L1 -963 6845 5870 * 5277 192 35 36 chr1 4519322 4520406 -238143947 - L1MD1 LINE L1 0 6242 5158 6318 35 0 0 chr1 4520406 4521145 -238143208 - L1PA4 LINE L1 -1 6154 5416 5277 192 35 36 chr1 4521145 4521158 -238143195 - L1MD1 LINE L1 -1084 5158 5146 2079 131 0 0 chr1 4521158 4521463 -238142890 - AluY SINE Alu -6 305 1 5277 192 35 36 chr1 4521463 4521881 -238142472 - L1MD1 LINE L1 -1096 5146 4735 486 220 112 100 chr1 4522003 4522188 -238142165 - L1MD1 LINE L1 -2991 3155 2965 2217 101 0 0 chr1 4522188 4522486 -238141867 - AluSx SINE Alu -9 303 6 486 220 112 100 chr1 4522486 4522550 -238141803 - L1MD1 LINE L1 -3181 2965 2903 344 299 58 7 chr1 4522566 4522703 -238141650 - L1MD1 LINE L1 -3323 2823 2680 2250 133 123 5 chr1 4522756 4523139 -238141214 - MSTA LTR MaLR 0 428 1 269 118 20 0 chr1 4523285 4523336 -238141017 + CT-rich Low_complexity Low_complexity 1 52 0 1512 167 31 0 chr1 4523342 4523600 -238140753 - AluSx SINE Alu -46 266 1 625 313 72 23 chr1 4523643 4523841 -238140512 - L1MD1 LINE L1 -3681 2465 2245 2419 115 33 8 chr1 4523841 4524207 -238140146 + THE1C LTR MaLR 1 375 0 625 313 72 23 chr1 4524207 4524312 -238140041 - L1MD1 LINE L1 -3901 2245 2147 1055 133 6 12 chr1 4526157 4526322 -238138031 + U1 snRNA snRNA 1 164 -1 270 0 0 0 chr1 4526340 4526370 -238137983 + (A)n Simple_repeat Simple_repeat 1 30 0 1756 182 34 58 chr1 4526386 4526551 -238137802 + MLT1A2 LTR MaLR 3 170 -204 860 148 0 15 chr1 4526551 4526686 -238137667 + FLAM_C SINE Alu 1 133 0 1756 182 34 58 chr1 4526686 4526899 -238137454 + MLT1A2 LTR MaLR 170 372 -2 183 296 19 0 chr1 4526981 4527035 -238137318 + L2 LINE L2 3218 3272 0 182 37 37 0 chr1 4528077 4528104 -238136249 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 247 299 26 17 chr1 4528225 4528342 -238136011 - MER103 DNA DNA -48 118 1 329 314 107 6 chr1 4528441 4528600 -238135753 + MIR SINE MIR 22 196 -66 372 43 0 0 chr1 4528701 4528747 -238135606 + (CA)n Simple_repeat Simple_repeat 1 46 0 253 330 136 11 chr1 4529575 4529751 -238134602 + MIR SINE MIR 33 230 -32 261 57 0 0 chr1 4529944 4529979 -238134374 + (CCCA)n Simple_repeat Simple_repeat 2 36 0 202 289 228 35 chr1 4529991 4530105 -238134248 - L2 LINE L2 -1 3271 3136 402 187 0 0 chr1 4530115 4530206 -238134147 + (TG)n Simple_repeat Simple_repeat 1 91 0 208 167 19 37 chr1 4530251 4530305 -238134048 - L2 LINE L2 -194 3078 3026 2212 82 3 3 chr1 4531889 4532181 -238132172 - AluY SINE Alu -19 292 1 324 259 101 84 chr1 4533256 4533603 -238130750 - L1ME4a LINE L1 -1 6120 5768 2331 75 0 3 chr1 4533624 4533930 -238130423 - AluY SINE Alu -6 305 1 2158 106 0 6 chr1 4534115 4534426 -238129927 - AluSp SINE Alu -4 309 1 450 64 0 64 chr1 4535118 4535196 -238129157 + Alu SINE Alu 1 73 -236 477 188 0 43 chr1 4536220 4536406 -238127947 + G-rich Low_complexity Low_complexity 3 180 0 194 191 21 0 chr1 4536410 4536457 -238127896 + GA-rich Low_complexity Low_complexity 3 50 0 216 0 0 0 chr1 4538125 4538149 -238126204 + (TG)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr1 4538148 4538171 -238126182 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 2011 121 7 17 chr1 4538172 4538470 -238125883 - AluSx SINE Alu -17 295 1 194 228 152 33 chr1 4538563 4538655 -238125698 + MIR SINE MIR 89 191 -71 383 207 97 48 chr1 4539308 4539453 -238124900 + L2 LINE L2 3152 3303 -10 291 273 106 15 chr1 4540436 4540568 -238123785 + L2 LINE L2 2680 2823 -491 253 289 58 19 chr1 4540564 4540668 -238123685 + L2 LINE L2 2933 3040 -232 * 222 328 168 42 chr1 4541252 4541371 -238122982 + L2 LINE L2 3176 3309 -4 2051 131 0 0 chr1 4541586 4541884 -238122469 - AluSx SINE Alu -14 298 1 187 219 0 96 chr1 4542042 4542115 -238122238 + MIR SINE MIR 162 227 -35 1866 130 7 7 chr1 4542142 4542441 -238121912 + AluSx SINE Alu 1 299 -13 550 287 37 21 chr1 4543335 4543523 -238120830 + MIR SINE MIR 60 250 -12 317 290 30 60 chr1 4544739 4544839 -238119514 - MIR SINE MIR -146 116 20 258 244 0 26 chr1 4544860 4544938 -238119415 - L1MC5 LINE L1 -46 7915 7840 633 251 84 11 chr1 4545074 4545265 -238119088 + MIR SINE MIR 14 218 -44 234 321 46 30 chr1 4545371 4545399 -238118954 - L2 LINE L2 -4 3268 3242 2095 115 3 0 chr1 4545399 4545694 -238118659 + AluSx SINE Alu 1 296 -16 234 321 46 30 chr1 4545694 4545796 -238118557 - L2 LINE L2 -30 3242 3136 197 245 0 0 chr1 4545800 4545849 -238118504 + MIR SINE MIR 211 259 -3 2839 197 24 100 chr1 4545871 4546485 -238117868 - L1MC5 LINE L1 -132 7829 7327 2192 127 61 58 chr1 4546485 4546880 -238117473 - MSTD LTR MaLR 0 396 1 2839 197 24 100 chr1 4546880 4547316 -238117037 - L1MC5 LINE L1 -634 7327 6859 1704 157 56 0 chr1 4547316 4547603 -238116750 - AluSx SINE Alu -9 303 1 5487 182 55 32 chr1 4547636 4549178 -238115175 + L1M4 LINE L1 4020 5588 -590 357 332 40 60 chr1 4549216 4549444 -238114909 - L1M4 LINE L1 -1024 5122 4891 2300 81 13 0 chr1 4549444 4549569 -238114784 + AluY SINE Alu 1 123 -188 351 0 0 0 chr1 4549569 4549608 -238114745 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2300 81 13 0 chr1 4549608 4549789 -238114564 + AluY SINE Alu 123 311 0 357 332 40 60 chr1 4549789 4550130 -238114223 - L1M4 LINE L1 -1255 4891 4564 * 4064 89 6 18 chr1 4550120 4550609 -238113744 - L1PA4 LINE L1 -1088 5058 4593 7760 29 0 1 chr1 4550609 4551703 -238112650 + L1PA4 LINE L1 5063 6155 0 4064 89 6 18 chr1 4551703 4551915 -238112438 - L1P LINE L1 -1553 4593 4380 231 160 0 20 chr1 4551973 4552023 -238112330 - LTR66 LTR ERVL -168 442 394 221 30 61 0 chr1 4552025 4552058 -238112295 + (CATA)n Simple_repeat Simple_repeat 4 38 0 21 0 0 0 chr1 4552125 4552146 -238112207 + AT_rich Low_complexity Low_complexity 1 21 0 672 254 25 99 chr1 4552554 4552908 -238111445 - LTR16C LTR ERVL -1 490 163 279 159 0 0 chr1 4553039 4553083 -238111270 + MIR SINE MIR 141 184 -78 1756 112 34 4 chr1 4553468 4553736 -238110617 - AluSq SINE Alu -8 305 30 298 301 87 68 chr1 4558382 4558648 -238105705 - L2 LINE L2 -7 3265 2995 258 136 0 0 chr1 4558651 4558695 -238105658 + (TG)n Simple_repeat Simple_repeat 1 44 0 471 269 200 28 chr1 4558720 4559152 -238105201 - L1ME2 LINE L1 -279 5885 5367 626 262 37 21 chr1 4560379 4560566 -238103787 - MIR SINE MIR -62 200 11 1921 90 0 11 chr1 4561829 4562097 -238102256 + L1PA7 LINE L1 5887 6151 -3 28 29 0 0 chr1 4562097 4562132 -238102221 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr1 4563005 4563034 -238101319 + AT_rich Low_complexity Low_complexity 1 29 0 2405 52 7 3 chr1 4563075 4563382 -238100971 + AluY SINE Alu 1 308 -3 911 170 13 0 chr1 4563457 4563610 -238100743 - MLT1A1 LTR MaLR 0 365 211 1126 197 4 56 chr1 4563679 4563928 -238100425 - MLT1A1 LTR MaLR -120 245 10 248 232 36 0 chr1 4564053 4564109 -238100244 - MIR SINE MIR -69 193 136 545 187 179 0 chr1 4564474 4564608 -238099745 + MER53 DNA DNA 32 189 0 422 257 194 14 chr1 4566175 4566319 -238098034 + MER5A DNA MER1_type 14 183 -6 306 345 109 65 chr1 4566375 4566668 -238097685 - L3b LINE CR1 -95 1488 1183 322 276 26 60 chr1 4566668 4566784 -238097569 + L2 LINE L2 3201 3312 -1 1187 163 20 0 chr1 4566812 4567008 -238097345 - MER58A DNA MER1_type -24 200 1 2187 89 0 0 chr1 4569077 4569368 -238094985 + AluSq SINE Alu 1 291 -22 183 265 61 0 chr1 4569562 4569611 -238094742 + L2 LINE L2 3221 3272 0 448 183 19 10 chr1 4570981 4571085 -238093268 - MER5A DNA MER1_type -74 115 11 845 163 141 105 chr1 4571960 4572102 -238092251 + MER33 DNA MER1_type 1 137 -2448 2053 129 0 16 chr1 4572102 4572411 -238091942 - AluSx SINE Alu -8 304 1 845 163 141 105 chr1 4572411 4572581 -238091772 + MER33 DNA MER1_type 137 324 0 491 292 88 71 chr1 4573261 4573793 -238090560 - L2 LINE L2 0 3272 2727 818 288 58 53 chr1 4574746 4575232 -238089121 + L1MEc LINE L1 254 741 -5866 1001 312 46 15 chr1 4575256 4575801 -238088552 + L1MEc LINE L1 715 1276 -5331 2193 243 52 19 chr1 4575810 4576381 -238087972 - MLT1E LTR MaLR -3 590 1 718 266 139 33 chr1 4576381 4576963 -238087390 + L1MEc LINE L1 1087 1772 -4656 326 177 0 48 chr1 4576991 4577053 -238087300 - L1MCa LINE L1 -4362 2064 2006 308 250 0 0 chr1 4577022 4577086 -238087267 - L1MC4 LINE L1 -1339 6983 6920 * 2276 95 0 3 chr1 4577089 4577393 -238086960 - AluSq SINE Alu -10 303 1 487 225 6 84 chr1 4577393 4577497 -238086856 + L1MEc LINE L1 1911 1997 -4610 592 260 0 0 chr1 4577497 4577620 -238086733 + FLAM_A SINE Alu 1 123 -10 487 225 6 84 chr1 4577620 4577693 -238086660 + L1MEc LINE L1 1997 2074 -4533 327 232 71 0 chr1 4577698 4577810 -238086543 + L1MEc LINE L1 3271 3390 -3036 1280 245 27 62 chr1 4577824 4578228 -238086125 + MLT1B LTR MaLR 1 390 0 402 242 15 0 chr1 4578229 4578361 -238085992 + L1MEc LINE L1 3401 3534 -2892 441 0 0 0 chr1 4578363 4578412 -238085941 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 996 241 113 3 chr1 4578500 4578873 -238085480 + L1MEc LINE L1 3492 3905 -2521 * 3140 199 11 48 chr1 4578871 4579671 -238084682 + L1MEc LINE L1 4601 5371 -1055 4130 177 62 17 chr1 4579685 4580559 -238083794 + L1MB7 LINE L1 5271 6183 -1 * 8294 229 54 32 chr1 4580546 4581657 -238082696 + L1MEc LINE L1 2052 3138 -3288 2176 111 0 16 chr1 4581657 4581973 -238082380 + AluSx SINE Alu 1 311 -1 8294 229 54 32 chr1 4581973 4583076 -238081277 + L1MEc LINE L1 3138 4216 -2210 234 0 0 0 chr1 4583076 4583102 -238081251 + (TA)n Simple_repeat Simple_repeat 2 27 0 2132 106 0 7 chr1 4583102 4583404 -238080949 - AluSc SINE Alu -7 302 3 8294 229 54 32 chr1 4583404 4584156 -238080197 + L1MEc LINE L1 4215 5062 -1364 324 0 0 0 chr1 4584254 4584290 -238080063 + (TG)n Simple_repeat Simple_repeat 2 37 0 211 154 0 26 chr1 4584790 4584829 -238079524 - L2 LINE L2 -10 3303 3266 288 310 28 35 chr1 4584845 4584987 -238079366 - L1ME LINE L1 -458 5663 5523 387 229 243 7 chr1 4585279 4585423 -238078930 - MIR SINE MIR -49 213 36 478 305 138 31 chr1 4585497 4586062 -238078291 - L2 LINE L2 -1 3312 2680 411 21 0 0 chr1 4588597 4588645 -238075708 + (TG)n Simple_repeat Simple_repeat 1 48 0 229 302 32 0 chr1 4588819 4588882 -238075471 - MIR3 SINE MIR -23 185 121 348 335 39 11 chr1 4589243 4589422 -238074931 + L2 LINE L2 1896 2079 -1235 447 259 17 0 chr1 4589745 4589861 -238074492 + L1ME LINE L1 5667 5784 -337 354 340 113 47 chr1 4590165 4590715 -238073638 + L2 LINE L2 2150 2735 -579 214 241 214 27 chr1 4590738 4590850 -238073503 + MIR SINE MIR 15 147 -115 477 0 0 0 chr1 4590924 4590977 -238073376 + (TTC)n Simple_repeat Simple_repeat 2 54 0 2160 92 0 0 chr1 4590977 4591297 -238073056 - AluSg SINE Alu 0 322 3 183 370 0 12 chr1 4591333 4591414 -238072939 + MIR SINE MIR 166 245 -17 220 319 109 0 chr1 4591492 4591611 -238072742 + L2 LINE L2 2893 3024 -289 250 337 47 0 chr1 4592843 4592929 -238071424 - L2 LINE L2 -30 3242 3153 411 244 22 0 chr1 4593574 4593664 -238070689 + MIR SINE MIR 57 148 -114 1367 179 135 39 chr1 4594421 4594828 -238069525 - MLT1J2 LTR MaLR 0 450 5 500 324 88 6 chr1 4594833 4595003 -238069350 - MIR SINE MIR -62 200 17 2693 118 70 0 chr1 4595664 4596062 -238068291 - MSTA LTR MaLR -2 426 1 205 133 0 0 chr1 4596269 4596299 -238068054 + MIR SINE MIR 116 145 -63 1215 222 61 51 chr1 4596343 4596893 -238067460 + MLT1C LTR MaLR 6 467 0 208 200 22 0 chr1 4597484 4597529 -238066824 + (TTA)n Simple_repeat Simple_repeat 1 46 0 423 244 21 20 chr1 4597685 4597811 -238066542 - MIR SINE MIR -61 147 20 214 215 215 11 chr1 4598182 4598275 -238066078 + MIR SINE MIR 114 225 -37 24 0 0 0 chr1 4598943 4598967 -238065386 + AT_rich Low_complexity Low_complexity 1 24 0 502 290 98 27 chr1 4601840 4602064 -238062289 + MIR SINE MIR 6 245 -17 229 252 63 63 chr1 4602185 4602296 -238062057 + L2 LINE L2 3183 3293 -20 371 315 163 0 chr1 4602429 4602607 -238061746 - L2 LINE L2 0 3313 3107 1172 242 118 25 chr1 4602607 4602962 -238061391 - MLT1E LTR MaLR 0 593 206 669 236 18 48 chr1 4603009 4603174 -238061179 - MIR SINE MIR -91 171 12 1516 297 109 18 chr1 4603213 4603826 -238060527 - L2 LINE L2 -691 2623 1955 484 332 101 29 chr1 4604345 4604731 -238059622 - L1MEc LINE L1 -5941 455 42 228 276 121 0 chr1 4605498 4605556 -238058797 - L2 LINE L2 -2 3270 3206 374 250 33 0 chr1 4605813 4605905 -238058448 + MIR SINE MIR 36 130 -78 492 227 0 25 chr1 4606634 4606772 -238057581 - MER69A DNA AcHobo -42 135 1 2279 84 0 3 chr1 4607192 4607489 -238056864 + AluSq SINE Alu 1 296 -17 661 281 17 22 chr1 4609781 4609959 -238054394 + MIR SINE MIR 85 261 -1 633 276 190 6 chr1 4610370 4610696 -238053657 - L2 LINE L2 -1 3312 2927 1498 214 9 24 chr1 4610704 4611040 -238053313 + L1MB4 LINE L1 5841 6171 -9 507 304 84 49 chr1 4611070 4612163 -238052190 - L1MC/D LINE L1 -803 5343 4636 9292 231 96 26 chr1 4612223 4613572 -238050781 - L1ME1 LINE L1 -156 5944 4691 1427 194 113 7 chr1 4613572 4613881 -238050472 - MER2 DNA MER2_type 0 344 3 9292 231 96 26 chr1 4613881 4616085 -238048268 - L1ME1 LINE L1 -1409 4691 2642 2615 35 0 0 chr1 4616085 4616396 -238047957 - AluYa5 SINE Alu 0 311 1 9292 231 96 26 chr1 4616396 4617112 -238047241 - L1ME1 LINE L1 -3458 2642 1977 1136 231 5 0 chr1 4617112 4617333 -238047020 - MER58A DNA MER1_type -2 222 1 9292 231 96 26 chr1 4617333 4617377 -238046976 - L1ME1 LINE L1 -4123 1977 1938 1106 65 18 12 chr1 4617377 4617547 -238046806 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1906 134 0 0 chr1 4617553 4617828 -238046525 - AluSx SINE Alu -37 275 1 9292 231 96 26 chr1 4617828 4618698 -238045655 - L1ME1 LINE L1 -4166 1934 384 217 369 71 20 chr1 4620841 4621039 -238043314 - L3 LINE CR1 -120 1457 1250 219 345 43 9 chr1 4622239 4622355 -238041998 + MIR3 SINE MIR 4 123 -85 1321 211 85 58 chr1 4622390 4622661 -238041692 - MLT1C LTR MaLR 0 467 178 2302 133 5 29 chr1 4622661 4623045 -238041308 - THE1C LTR MaLR 0 375 1 1321 211 85 58 chr1 4623045 4623218 -238041135 - MLT1C LTR MaLR -289 178 11 306 305 0 0 chr1 4623234 4623316 -238041037 + MIR SINE MIR 178 259 -3 285 304 82 86 chr1 4623430 4623673 -238040680 - L2 LINE L2 -36 3236 2995 645 236 118 0 chr1 4624139 4624300 -238040053 + MIR SINE MIR 62 241 -21 229 189 57 0 chr1 4624554 4624607 -238039746 + Charlie2 DNA MER1_type 2780 2835 -27 385 224 12 12 chr1 4625586 4625671 -238038682 + L2 LINE L2 3228 3312 -1 216 246 0 88 chr1 4625846 4625903 -238038450 - L2 LINE L2 -85 3187 3136 2497 111 98 0 chr1 4626028 4626416 -238037937 + MSTA LTR MaLR 1 426 -2 186 43 0 0 chr1 4626458 4626481 -238037872 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 360 255 51 20 chr1 4626482 4626580 -238037773 - L2 LINE L2 -14 3299 3199 1393 261 19 44 chr1 4626586 4627106 -238037247 - L1MEd LINE L1 -1691 4438 3932 2471 281 77 41 chr1 4627111 4628041 -238036312 - HERV16 LTR ERVL -2372 2624 1661 1369 276 71 19 chr1 4628046 4628513 -238035840 - HERV16 LTR ERVL -3495 1501 1011 1046 287 51 29 chr1 4628641 4629052 -238035301 - HERV16 LTR ERVL -4155 841 422 850 204 64 0 chr1 4629132 4629304 -238035049 - MER58A DNA MER1_type 0 224 42 313 170 0 0 chr1 4629348 4629401 -238034952 + L1ME LINE L1 5514 5566 -600 * 711 270 34 6 chr1 4629398 4629724 -238034629 - L1MEd LINE L1 -2695 3434 3100 294 163 58 12 chr1 4629728 4629814 -238034539 + CT-rich Low_complexity Low_complexity 2 91 0 382 238 54 30 chr1 4629934 4630102 -238034251 - L1MEd LINE L1 -3130 2999 2828 505 277 8 0 chr1 4630123 4630242 -238034111 + L2 LINE L2 2955 3074 -239 959 124 0 20 chr1 4630305 4630458 -238033895 - AluSg/x SINE Alu 0 312 163 475 277 8 23 chr1 4630505 4630635 -238033718 + L2 LINE L2 3185 3312 -1 733 261 159 46 chr1 4630676 4631285 -238033068 - L1MEd LINE L1 -3359 2770 2093 1643 71 5 0 chr1 4631408 4631620 -238032733 + AluSg/x SINE Alu 86 298 -14 870 269 146 25 chr1 4631882 4632626 -238031727 - L2 LINE L2 0 3313 2250 219 36 0 0 chr1 4632643 4632671 -238031682 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1985 127 0 0 chr1 4632673 4632956 -238031397 - AluSx SINE Alu -29 283 1 480 179 42 0 chr1 4632956 4633051 -238031302 - MER69 DNA AcHobo -4 2522 2424 211 284 40 0 chr1 4633102 4633176 -238031177 - L2 LINE L2 -1042 2272 2196 2116 187 52 16 chr1 4633176 4633620 -238030733 + MLT1C LTR MaLR 8 467 0 1182 254 126 36 chr1 4633623 4633932 -238030421 - L2 LINE L2 -1135 2179 1899 2291 50 40 10 chr1 4633932 4634230 -238030123 + AluY SINE Alu 1 307 -4 1182 254 126 36 chr1 4634230 4634506 -238029847 - L2 LINE L2 -1415 1899 1541 659 260 78 70 chr1 4634539 4635013 -238029340 - L1MEd LINE L1 -4613 1697 1228 1455 168 29 19 chr1 4635013 4635322 -238029031 + AluJb SINE Alu 1 312 0 659 260 78 70 chr1 4635322 4635806 -238028547 - L1MEd LINE L1 -5082 1228 700 22 35 0 0 chr1 4636144 4636173 -238028180 + AT_rich Low_complexity Low_complexity 1 29 0 1961 102 15 0 chr1 4637757 4638031 -238026322 + AluSq SINE Alu 1 278 -35 189 0 0 0 chr1 4638036 4638057 -238026296 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 494 148 8 141 chr1 4638160 4638288 -238026065 - Charlie1 DNA MER1_type -20 2741 2631 332 231 194 22 chr1 4638285 4638419 -238025934 - Charlie1 DNA MER1_type -2523 238 82 * 180 125 0 0 chr1 4639609 4639641 -238024712 + (CA)n Simple_repeat Simple_repeat 1 32 0 213 65 0 0 chr1 4641937 4641968 -238022385 + (G)n Simple_repeat Simple_repeat 1 31 0 1017 151 6 17 chr1 4644124 4644296 -238020057 + MLT2D LTR ERVL 6 175 -239 1449 177 28 32 chr1 4644496 4644778 -238019575 + MLT2C2 LTR ERVL 149 429 -35 285 139 28 14 chr1 4644778 4644850 -238019503 + (TA)n Simple_repeat Simple_repeat 2 74 0 264 164 55 0 chr1 4644862 4644917 -238019436 + MLT2C2 LTR ERVL 463 520 0 486 306 111 5 chr1 4645299 4645515 -238018838 - L2 LINE L2 0 3313 3075 361 237 0 0 chr1 4645521 4645597 -238018756 + L1MB3 LINE L1 6089 6164 -19 1886 139 186 6 chr1 4645597 4645957 -238018396 - MSTA LTR MaLR 0 428 4 621 203 8 8 chr1 4645983 4646111 -238018242 + L1MB8 LINE L1 6051 6178 0 282 250 15 0 chr1 4646127 4646195 -238018158 - L2 LINE L2 -229 3084 3016 272 209 252 35 chr1 4646205 4646320 -238018033 - MIR3 SINE MIR -64 144 5 2005 131 20 3 chr1 4646389 4646694 -238017659 - AluSx SINE Alu -2 310 1 1232 206 5 5 chr1 4646824 4647042 -238017311 - MER58A DNA MER1_type 0 224 7 270 153 0 0 chr1 4647334 4647393 -238016960 + CT-rich Low_complexity Low_complexity 4 62 0 564 101 0 0 chr1 4647480 4647569 -238016784 + (TCCA)n Simple_repeat Simple_repeat 4 92 0 329 321 47 0 chr1 4647577 4647683 -238016670 - L2 LINE L2 -6 3266 3156 398 297 8 17 chr1 4648780 4648898 -238015455 - MIR SINE MIR -40 222 106 222 298 38 51 chr1 4649406 4649564 -238014789 - MIR3 SINE MIR -6 202 47 553 326 25 18 chr1 4650552 4650828 -238013525 - L1ME3A LINE L1 -223 5947 5670 259 132 0 0 chr1 4650840 4650878 -238013475 - MLT1G1 LTR MaLR 0 595 558 693 276 67 7 chr1 4651022 4651268 -238013085 - MLT1H1 LTR MaLR -288 242 11 686 269 74 29 chr1 4651287 4651546 -238012807 - L1ME3A LINE L1 -555 5609 5363 2192 70 3 17 chr1 4651546 4651848 -238012505 - AluY SINE Alu -13 298 1 686 269 74 29 chr1 4651848 4652188 -238012165 - L1ME3A LINE L1 -801 5363 4982 413 271 80 53 chr1 4652989 4653177 -238011176 + MIR3 SINE MIR 13 205 -3 1281 230 46 41 chr1 4654342 4654781 -238009572 - MLT1C LTR MaLR -16 451 11 1339 218 103 0 chr1 4656292 4656631 -238007722 - MLT1B LTR MaLR -16 374 1 247 288 100 75 chr1 4657299 4657459 -238006894 - L3 LINE CR1 -79 1498 1335 219 69 0 0 chr1 4657520 4657549 -238006804 + (TG)n Simple_repeat Simple_repeat 1 29 0 255 229 9 29 chr1 4658911 4659016 -238005337 + GA-rich Low_complexity Low_complexity 6 108 0 275 244 0 61 chr1 4659898 4659980 -238004373 + MIR SINE MIR 82 158 -104 511 322 66 13 chr1 4660003 4660210 -238004143 + L2 LINE L2 2143 2364 -950 2380 106 6 0 chr1 4660210 4660521 -238003832 - AluSq SINE Alu 0 313 1 511 322 66 13 chr1 4660521 4660540 -238003813 + L2 LINE L2 2364 2381 -933 4967 126 15 11 chr1 4660547 4660935 -238003418 - L1PA15 LINE L1 -1 6164 5779 2599 64 0 3 chr1 4660935 4661246 -238003107 - AluY SINE Alu -1 310 1 4967 126 15 11 chr1 4661246 4661664 -238002689 - L1PA15 LINE L1 -386 5779 5355 2245 127 0 13 chr1 4661717 4662032 -238002321 + AluSx SINE Alu 1 311 -1 1029 127 6 19 chr1 4662032 4662213 -238002140 + AluJb SINE Alu 134 312 0 769 267 148 33 chr1 4662229 4662773 -238001580 + L2 LINE L2 2421 3047 -266 532 291 92 19 chr1 4663517 4663723 -238000630 + MIR SINE MIR 1 221 -41 346 265 102 7 chr1 4664210 4664357 -237999996 + MIR SINE MIR 45 205 -57 2030 178 102 2 chr1 4666646 4667067 -237997286 - MLT1C LTR MaLR -4 463 1 545 253 35 61 chr1 4667229 4667427 -237996926 + MIR SINE MIR 51 243 -19 254 324 57 22 chr1 4668047 4668278 -237996075 - L2 LINE L2 -2 3270 2965 224 250 44 19 chr1 4669158 4669318 -237995035 + (AGTTG)n Simple_repeat Simple_repeat 1 164 0 296 290 153 27 chr1 4670732 4670915 -237993438 - MIR3 SINE MIR 0 208 3 250 291 23 35 chr1 4670938 4671024 -237993329 - L2 LINE L2 -1 3312 3228 1004 165 43 0 chr1 4671032 4671220 -237993133 - MLT1A1 LTR MaLR 0 365 170 516 121 0 48 chr1 4671243 4671326 -237993027 - AluJ/FRAM SINE Alu -12 300 222 324 70 0 0 chr1 4671655 4671698 -237992655 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 278 235 141 24 chr1 4672851 4672936 -237991417 + L2 LINE L2 3216 3310 -3 195 312 184 0 chr1 4675468 4675577 -237988776 + L2 LINE L2 3136 3264 -8 954 262 128 19 chr1 4676210 4676633 -237987720 - MER77 LTR ERV1 -15 590 122 2528 81 0 0 chr1 4677699 4678009 -237986344 - AluY SINE Alu -1 310 1 2189 95 3 11 chr1 4678038 4678358 -237985995 - AluSx SINE Alu 0 318 1 272 253 152 40 chr1 4678600 4678699 -237985654 + MER20 DNA MER1_type 1 110 -109 209 370 43 0 chr1 4678703 4678795 -237985558 - MIR SINE MIR -84 124 29 471 332 65 14 chr1 4679454 4679671 -237984682 - MIR SINE MIR -33 229 2 690 201 16 58 chr1 4679899 4680088 -237984265 - MER20 DNA MER1_type 0 219 39 269 294 78 10 chr1 4681595 4681697 -237982656 - MIR SINE MIR -105 157 49 192 276 255 0 chr1 4683985 4684083 -237980270 - L2 LINE L2 -1 3271 3149 293 299 120 25 chr1 4684105 4684389 -237979964 - MLT1K LTR MaLR -90 498 188 787 251 22 27 chr1 4684407 4684473 -237979880 + MER58A DNA MER1_type 2 67 -2353 1890 125 4 7 chr1 4684473 4684745 -237979608 + AluSx SINE Alu 38 308 -4 787 251 22 27 chr1 4684745 4684901 -237979452 + MER58A DNA MER1_type 67 223 -1 2107 194 36 2 chr1 4685125 4685574 -237978779 + L1MB5 LINE L1 5711 6174 0 2342 103 3 0 chr1 4687093 4687394 -237976959 + AluSp SINE Alu 3 304 -9 247 213 0 0 chr1 4687719 4687766 -237976587 - MIR SINE MIR -13 249 203 320 160 53 27 chr1 4687861 4687936 -237976417 - MLT1J LTR MaLR -8 503 427 188 35 35 0 chr1 4687936 4687965 -237976388 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 6451 13 5 0 chr1 4687965 4688719 -237975634 - L1PA3 LINE L1 -13 6142 5385 675 274 33 8 chr1 4688772 4689081 -237975272 - MLT1J LTR MaLR -141 370 1 401 0 20 0 chr1 4689623 4689672 -237974681 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 556 241 0 60 chr1 4689739 4689905 -237974448 - L2 LINE L2 0 3313 3158 853 264 39 43 chr1 4690172 4690426 -237973927 + MIR SINE MIR 4 256 -6 250 185 19 0 chr1 4690429 4690483 -237973870 + (ATGGTG)n Simple_repeat Simple_repeat 1 55 0 396 217 0 0 chr1 4690506 4690644 -237973709 + (ATG)n Simple_repeat Simple_repeat 2 139 0 204 234 170 21 chr1 4690653 4690747 -237973606 - L2 LINE L2 -21 3292 3185 1724 85 0 0 chr1 4691890 4692101 -237972252 - AluY SINE Alu -15 296 86 262 400 52 0 chr1 4693431 4693586 -237970767 + MIR SINE MIR 50 212 -50 199 321 84 68 chr1 4693741 4693990 -237970363 + L2 LINE L2 2015 2267 -1047 408 254 145 29 chr1 4694854 4694992 -237969361 + MIR SINE MIR 47 200 -62 316 287 17 9 chr1 4697289 4697404 -237966949 + MIR SINE MIR 63 178 -84 2308 91 14 0 chr1 4697798 4698094 -237966259 - AluSp SINE Alu -13 300 1 270 0 0 0 chr1 4698126 4698156 -237966197 + (TG)n Simple_repeat Simple_repeat 2 31 0 363 271 0 0 chr1 4698183 4698268 -237966085 - MIR SINE MIR -100 162 78 2961 220 49 39 chr1 4698295 4698939 -237965414 - L1ME1 LINE L1 -11 6155 5519 1566 144 9 114 chr1 4698939 4699056 -237965297 + AluJo SINE Alu 1 129 -183 2282 98 10 0 chr1 4699056 4699352 -237965001 - AluSp SINE Alu -14 299 1 1566 144 9 114 chr1 4699352 4699394 -237964959 + AluJo SINE Alu 129 174 -138 1915 118 22 4 chr1 4699394 4699665 -237964688 + AluSx SINE Alu 5 280 -32 249 33 0 0 chr1 4699665 4699695 -237964658 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 1566 144 9 114 chr1 4699695 4699867 -237964486 + AluJo SINE Alu 172 299 -13 2961 220 49 39 chr1 4699867 4700044 -237964309 - L1ME1 LINE L1 -647 5519 5326 1656 143 4 50 chr1 4700052 4700332 -237964021 - AluJo SINE Alu -2 310 44 15125 186 24 30 chr1 4700360 4701609 -237962744 - L1MA6 LINE L1 0 7719 6464 420 37 0 0 chr1 4701609 4701663 -237962690 + (TG)n Simple_repeat Simple_repeat 1 54 0 2344 115 0 0 chr1 4701667 4701980 -237962373 - AluSq SINE Alu 0 313 1 15125 186 24 30 chr1 4701980 4702814 -237961539 - L1MA6 LINE L1 -1258 6461 5623 2629 155 19 7 chr1 4702814 4703241 -237961112 + MSTB1 LTR MaLR 1 432 0 15125 186 24 30 chr1 4703241 4704952 -237959401 - L1MA6 LINE L1 -2096 5623 3903 360 0 0 0 chr1 4704952 4704992 -237959361 + (TC)n Simple_repeat Simple_repeat 2 41 0 * 405 0 0 0 chr1 4704991 4705036 -237959317 + (TA)n Simple_repeat Simple_repeat 2 46 0 15125 186 24 30 chr1 4704992 4705840 -237958513 - L1MA6 LINE L1 -3816 3903 3051 2461 143 18 39 chr1 4705840 4706281 -237958072 + MSTB1 LTR MaLR 1 432 0 15125 186 24 30 chr1 4706281 4707588 -237956765 - L1MA6 LINE L1 -4668 3051 2097 3193 197 61 31 chr1 4707673 4708626 -237955727 - L1ME1 LINE L1 -864 5282 4304 207 304 101 32 chr1 4708693 4708851 -237955502 + MIR3 SINE MIR 13 181 -27 410 281 127 91 chr1 4709802 4709870 -237954483 - L2 LINE L2 -30 3242 3178 2260 92 17 3 chr1 4709870 4710164 -237954189 + AluSq SINE Alu 3 300 -13 410 281 127 91 chr1 4710164 4710428 -237953925 - L2 LINE L2 -94 3178 2899 496 291 53 5 chr1 4710558 4710747 -237953606 - MIR SINE MIR -15 247 50 265 317 67 0 chr1 4710802 4710922 -237953431 - MIR SINE MIR -14 248 121 188 53 35 70 chr1 4711704 4711761 -237952592 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1887 164 0 16 chr1 4712152 4712469 -237951884 - AluJb SINE Alu 0 312 1 303 309 122 0 chr1 4712481 4712604 -237951749 + MIR SINE MIR 86 223 -39 399 224 0 0 chr1 4713357 4713464 -237950889 + (CA)n Simple_repeat Simple_repeat 2 108 0 222 361 56 0 chr1 4715031 4715139 -237949214 + L2 LINE L2 3153 3266 -6 318 253 13 0 chr1 4715552 4715627 -237948726 - MIR3 SINE MIR -21 187 112 200 333 121 8 chr1 4716399 4716531 -237947822 - MIR SINE MIR -66 196 50 774 113 0 0 chr1 4717695 4717819 -237946534 + (TG)n Simple_repeat Simple_repeat 1 124 0 1574 81 36 5 chr1 4718133 4718354 -237945999 + AluSc SINE Alu 79 306 -3 187 222 44 0 chr1 4718467 4718512 -237945841 + L2 LINE L2 3226 3272 0 40680 35 2 3 chr1 4718555 4724720 -237939633 - L1PA4 LINE L1 0 6155 4 1353 276 193 15 chr1 4724858 4724991 -237939362 + L2 LINE L2 2008 2116 -1198 2063 134 0 10 chr1 4724991 4725296 -237939057 - AluSx SINE Alu -10 302 1 1353 276 193 15 chr1 4725296 4725832 -237938521 + L2 LINE L2 2116 2796 -518 1117 297 133 39 chr1 4725898 4725941 -237938412 + L2 LINE L2 2048 2086 -1227 2200 118 3 3 chr1 4725941 4726254 -237938099 - AluSq SINE Alu 0 313 1 1117 297 133 39 chr1 4726254 4727313 -237937040 + L2 LINE L2 2086 3311 -2 2255 115 0 3 chr1 4727938 4728251 -237936102 - AluSq SINE Alu -1 312 1 543 274 80 7 chr1 4728284 4728477 -237935876 + MIR SINE MIR 22 233 -29 297 344 94 0 chr1 4729406 4729534 -237934819 - MIR SINE MIR -110 152 13 2270 88 7 0 chr1 4729986 4730291 -237934062 + AluSq SINE Alu 1 307 -6 199 286 0 18 chr1 4732739 4732795 -237931558 - L2 LINE L2 -18 3254 3200 431 316 8 15 chr1 4735020 4735153 -237929200 + L2 LINE L2 3179 3310 -3 219 327 33 43 chr1 4735260 4735471 -237928882 + L2 LINE L2 2717 2925 -389 196 244 58 35 chr1 4735617 4735703 -237928650 + L2 LINE L2 3182 3269 -3 654 295 35 13 chr1 4735898 4736125 -237928228 + MIR SINE MIR 28 259 -3 492 233 0 0 chr1 4736128 4736274 -237928079 + (ATG)n Simple_repeat Simple_repeat 2 147 0 701 156 24 12 chr1 4736277 4736444 -237927909 + (ATGGTG)n Simple_repeat Simple_repeat 4 172 0 2338 96 70 8 chr1 4736491 4736876 -237927477 - MSTA LTR MaLR -11 417 9 569 220 0 16 chr1 4736905 4737087 -237927266 + (ATG)n Simple_repeat Simple_repeat 1 179 0 201 154 0 0 chr1 4737148 4737187 -237927166 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 419 250 0 17 chr1 4737212 4737388 -237926965 + (ATG)n Simple_repeat Simple_repeat 3 175 0 497 284 77 0 chr1 4739003 4739158 -237925195 - MIR SINE MIR -64 198 32 1230 216 23 20 chr1 4740340 4740646 -237923707 + L1MD1 LINE L1 5800 6106 -136 234 0 0 0 chr1 4741246 4741272 -237923081 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 246 260 7 123 chr1 4741273 4741372 -237922981 - L2 LINE L2 -8 3264 3186 1011 194 123 83 chr1 4741372 4741549 -237922804 - MLT1A1 LTR MaLR -1 364 196 1888 151 6 35 chr1 4741549 4741866 -237922487 + AluJb SINE Alu 1 308 -4 1011 194 123 83 chr1 4741866 4742038 -237922315 - MLT1A1 LTR MaLR -169 196 1 246 260 7 123 chr1 4742038 4742084 -237922269 - L2 LINE L2 -86 3186 3136 1292 209 159 0 chr1 4744052 4744430 -237919923 - MLT1C LTR MaLR -28 439 2 299 318 216 25 chr1 4744585 4744947 -237919406 - L2 LINE L2 0 3313 2883 275 350 108 5 chr1 4745554 4745748 -237918605 + MIR SINE MIR 20 233 -29 230 279 103 0 chr1 4746657 4746725 -237917628 + MIR3 SINE MIR 104 178 -30 181 276 171 33 chr1 4748349 4748501 -237915852 - L2 LINE L2 -189 3083 2911 602 358 5 10 chr1 4749342 4749549 -237914804 + MIR SINE MIR 7 212 -50 476 302 31 0 chr1 4749549 4749678 -237914675 - L2 LINE L2 -1 3312 3180 376 316 39 32 chr1 4749993 4750148 -237914205 + L2 LINE L2 3117 3272 0 386 340 62 14 chr1 4751621 4751765 -237912588 - L2 LINE L2 -4 3268 3118 296 376 43 12 chr1 4752681 4752843 -237911510 + MIR3 SINE MIR 27 193 -15 24 32 0 0 chr1 4753074 4753105 -237911248 + AT_rich Low_complexity Low_complexity 1 31 0 214 400 12 0 chr1 4753488 4753568 -237910785 + L3 LINE CR1 1472 1552 -25 296 241 97 14 chr1 4753815 4753960 -237910393 - MER20 DNA MER1_type -57 162 6 372 274 86 8 chr1 4754639 4754756 -237909597 - MIR SINE MIR -122 140 15 2131 166 17 6 chr1 4755290 4755651 -237908702 - MLT1A1 LTR MaLR 0 365 1 2130 123 7 0 chr1 4756261 4756571 -237907782 + AluSx SINE Alu 1 312 0 205 291 55 36 chr1 4756924 4757034 -237907319 + MIR SINE MIR 81 192 -70 339 318 32 16 chr1 4758846 4758972 -237905381 + L2 LINE L2 3144 3271 -1 2348 231 30 0 chr1 4759143 4759701 -237904652 - L1MB5 LINE L1 -13 6161 5587 353 329 124 9 chr1 4761134 4761344 -237903009 - MIR SINE MIR -14 248 15 277 368 0 11 chr1 4761709 4761804 -237902549 - MIR SINE MIR -106 156 63 672 180 6 17 chr1 4762916 4763094 -237901259 + GA-rich Low_complexity Low_complexity 3 178 0 273 256 0 44 chr1 4763747 4763837 -237900516 + C-rich Low_complexity Low_complexity 3 88 0 22 0 0 0 chr1 4763988 4764010 -237900343 + AT_rich Low_complexity Low_complexity 1 22 0 288 355 50 21 chr1 4764990 4765131 -237899222 + MIR SINE MIR 38 182 -80 332 327 27 9 chr1 4765870 4765980 -237898373 + MIR SINE MIR 20 131 -131 232 303 81 0 chr1 4766924 4767023 -237897330 + L2 LINE L2 2950 3056 -216 789 156 12 42 chr1 4768118 4768285 -237896068 + MER3 DNA MER1_type 48 209 0 1050 82 0 0 chr1 4768845 4768979 -237895374 - AluSp/q SINE Alu -14 299 166 2044 114 38 0 chr1 4768981 4769271 -237895082 - AluSx SINE Alu -11 301 1 495 213 62 19 chr1 4769274 4769434 -237894919 + MER58 DNA MER1_type 43 209 -132 330 355 69 31 chr1 4770015 4770384 -237893969 + L1MEd LINE L1 895 1302 -1205 28 0 0 0 chr1 4770686 4770714 -237893639 + AT_rich Low_complexity Low_complexity 1 28 0 306 335 101 53 chr1 4771227 4771603 -237892750 + L1MEd LINE L1 2982 3375 -2771 22 0 0 0 chr1 4773629 4773651 -237890702 + AT_rich Low_complexity Low_complexity 1 22 0 237 197 211 0 chr1 4776817 4776888 -237887465 + MARNA DNA Mariner 277 362 -224 219 69 0 0 chr1 4777419 4777448 -237886905 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 185 111 44 0 chr1 4780811 4780856 -237883497 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 288 312 52 13 chr1 4781167 4781321 -237883032 - MIR3 SINE MIR -19 189 30 273 317 10 40 chr1 4782198 4782299 -237882054 - MIR SINE MIR -103 159 62 379 286 0 0 chr1 4783782 4783866 -237880487 + MIR SINE MIR 71 154 -108 373 286 0 0 chr1 4783872 4783956 -237880397 + MIR SINE MIR 71 154 -108 446 325 27 37 chr1 4783962 4784150 -237880203 + MIR SINE MIR 71 256 -6 204 282 70 92 chr1 4785362 4785504 -237878849 - MIR SINE MIR -74 188 50 193 225 0 0 chr1 4785507 4785547 -237878806 - L2 LINE L2 -82 3190 3151 182 328 17 17 chr1 4785996 4786112 -237878241 - L2 LINE L2 -166 3106 2991 204 125 0 0 chr1 4789292 4789324 -237875029 + (CAGCT)n Simple_repeat Simple_repeat 3 34 0 656 228 0 12 chr1 4789553 4790069 -237874284 + (TG)n Simple_repeat Simple_repeat 1 509 0 339 328 173 9 chr1 4790090 4790419 -237873934 + L2 LINE L2 1794 2176 -1138 5983 33 1 2 chr1 4790522 4791316 -237873037 - L1P LINE L1 -1747 4399 3607 7309 56 12 7 chr1 4791316 4792768 -237871585 - SVA Other Other -839 1386 44 6084 114 4 10 chr1 4793299 4794629 -237869724 + L1PA15 LINE L1 4842 6165 0 1138 192 37 4 chr1 4794630 4794875 -237869478 + MLT1A1 LTR MaLR 113 365 0 337 253 118 56 chr1 4794958 4795136 -237869217 - MIR SINE MIR -53 209 21 700 177 7 7 chr1 4796115 4796394 -237867959 + (ATG)n Simple_repeat Simple_repeat 1 279 0 902 139 7 39 chr1 4796328 4796672 -237867681 + (ATGGTG)n Simple_repeat Simple_repeat 1 332 0 720 169 14 41 chr1 4796692 4797058 -237867295 + (ATGGTG)n Simple_repeat Simple_repeat 1 355 0 928 149 9 0 chr1 4797194 4797430 -237866923 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 180 336 168 9 chr1 4797442 4797555 -237866798 - L2 LINE L2 -16 3256 3126 319 212 176 0 chr1 4798569 4798654 -237865699 + MLT2D LTR ERVL 17 116 -298 26168 52 2 9 chr1 4798656 4802304 -237862049 + L1P LINE L1 1 3621 -2525 653 66 11 0 chr1 4802318 4802409 -237861944 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 216 156 16 31 chr1 4802615 4802679 -237861674 + GA-rich Low_complexity Low_complexity 4 66 0 356 301 15 15 chr1 4802742 4802875 -237861478 + GA-rich Low_complexity Low_complexity 4 136 0 684 223 0 0 chr1 4803258 4803568 -237860785 + (TG)n Simple_repeat Simple_repeat 1 310 0 183 42 0 0 chr1 4803568 4803592 -237860761 + (GA)n Simple_repeat Simple_repeat 1 24 0 1296 304 171 7 chr1 4803592 4804713 -237859640 + L2 LINE L2 1794 3110 -203 312 315 70 5 chr1 4804720 4804920 -237859433 - L1MC4 LINE L1 -1 8041 7829 1066 223 12 56 chr1 4804961 4805302 -237859051 - L1ME2 LINE L1 0 6164 5839 414 341 6 43 chr1 4805306 4805470 -237858883 + L2 LINE L2 3149 3306 -7 261 277 219 0 chr1 4806326 4806481 -237857872 - L2 LINE L2 -829 2485 2297 319 265 10 20 chr1 4807511 4807609 -237856744 + MIR SINE MIR 46 142 -66 2361 81 0 0 chr1 4807664 4807959 -237856394 + AluY SINE Alu 1 295 -16 452 320 33 7 chr1 4808845 4808998 -237855355 - MIR3 SINE MIR -34 174 18 766 255 15 25 chr1 4809345 4809549 -237854804 + MER63A DNA MER1_type 1 202 -8 614 251 64 48 chr1 4810060 4810247 -237854106 + MIR SINE MIR 58 247 -15 858 212 0 5 chr1 4810492 4810676 -237853677 - MER96B DNA MER1_type? -186 231 49 190 200 0 109 chr1 4810794 4810849 -237853504 + L2 LINE L2 3201 3249 -23 319 157 29 0 chr1 4811635 4811705 -237852648 + (CA)n Simple_repeat Simple_repeat 1 72 0 210 279 49 0 chr1 4811707 4811768 -237852585 + (CATG)n Simple_repeat Simple_repeat 3 66 0 327 305 17 33 chr1 4811777 4811959 -237852394 - L1MCa LINE L1 -1339 6983 1995 254 257 40 0 chr1 4811983 4812057 -237852296 + (CATATA)n Simple_repeat Simple_repeat 1 77 0 277 195 12 12 chr1 4812061 4812143 -237852210 + (CA)n Simple_repeat Simple_repeat 2 83 0 250 273 227 18 chr1 4812649 4812759 -237851594 - L2 LINE L2 0 3272 3140 2347 65 3 3 chr1 4813526 4813820 -237850533 + AluSx SINE Alu 1 294 -18 633 226 0 0 chr1 4815775 4816244 -237848109 + (CA)n Simple_repeat Simple_repeat 1 469 0 558 242 5 0 chr1 4816256 4816696 -237847657 + (CA)n Simple_repeat Simple_repeat 1 442 0 2111 134 0 0 chr1 4817681 4817986 -237846367 + AluSx SINE Alu 1 305 -7 182 281 53 0 chr1 4820543 4820600 -237843753 + MIR SINE MIR 44 103 -159 342 215 0 0 chr1 4821305 4821435 -237842918 + (TG)n Simple_repeat Simple_repeat 1 130 0 455 222 0 6 chr1 4821454 4821634 -237842719 + (TG)n Simple_repeat Simple_repeat 1 179 0 194 283 0 10 chr1 4821712 4821811 -237842542 + (TG)n Simple_repeat Simple_repeat 1 98 0 229 317 0 0 chr1 4821826 4821886 -237842467 + (TG)n Simple_repeat Simple_repeat 1 60 0 207 204 0 0 chr1 4821925 4821969 -237842384 + (TG)n Simple_repeat Simple_repeat 2 45 0 312 210 17 28 chr1 4821991 4822172 -237842181 + (TG)n Simple_repeat Simple_repeat 2 180 0 180 125 0 0 chr1 4822210 4822242 -237842111 + (TG)n Simple_repeat Simple_repeat 1 32 0 498 224 29 52 chr1 4823329 4823503 -237840850 + MER53 DNA DNA 1 170 -19 209 344 62 0 chr1 4824747 4824843 -237839510 + L2 LINE L2 3154 3255 -17 991 190 78 5 chr1 4828338 4828543 -237835810 - MER58A DNA MER1_type -4 220 1 738 187 42 17 chr1 4829237 4829570 -237834783 - MSTD LTR MaLR 0 396 2 320 288 130 14 chr1 4830022 4830168 -237834185 - MIR SINE MIR -80 182 20 2310 112 0 0 chr1 4830176 4830488 -237833865 - AluSx SINE Alu 0 312 1 546 215 90 7 chr1 4831496 4831640 -237832713 + MIR SINE MIR 77 232 -30 247 368 86 31 chr1 4832394 4832557 -237831796 + MIR SINE MIR 20 191 -71 1180 267 124 2 chr1 4833060 4833502 -237830851 - MLT1J LTR MaLR -9 502 7 336 333 157 0 chr1 4834000 4834153 -237830200 + L3 LINE CR1 1294 1470 -107 1293 202 121 57 chr1 4834735 4835191 -237829162 - MER31A LTR ERV1 0 485 1 233 379 42 0 chr1 4835193 4835288 -237829065 - L2 LINE L2 -23 3249 3151 745 194 27 21 chr1 4835373 4835559 -237828794 + MER20 DNA MER1_type 29 215 -4 1311 166 92 0 chr1 4835562 4835833 -237828520 - MER46C DNA MER2_type -42 296 1 525 319 113 7 chr1 4835833 4836300 -237828053 - L2 LINE L2 -155 3158 2647 204 245 0 0 chr1 4841497 4841546 -237822807 + T-rich Low_complexity Low_complexity 6 54 0 364 303 83 51 chr1 4842233 4842490 -237821863 + L2 LINE L2 2730 3001 -312 2206 108 0 0 chr1 4842490 4842808 -237821545 - AluSq SINE Alu 0 318 1 364 303 83 51 chr1 4842808 4842875 -237821478 + L2 LINE L2 3001 3064 -249 226 261 98 33 chr1 4843553 4843645 -237820708 - MIR SINE MIR -77 131 34 310 287 113 40 chr1 4843845 4843995 -237820358 - L2 LINE L2 0 3313 3153 229 162 0 0 chr1 4844062 4844099 -237820254 + Alu SINE Alu 1 37 -265 1768 140 0 4 chr1 4844099 4844363 -237819990 - AluSx SINE Alu -12 300 38 364 280 47 0 chr1 4846106 4846213 -237818140 + MIR SINE MIR 38 149 -59 271 293 27 0 chr1 4846323 4846398 -237817955 + MIR3 SINE MIR 101 177 -31 263 326 54 16 chr1 4846712 4846841 -237817512 + L2 LINE L2 3138 3271 -1 423 325 100 0 chr1 4847391 4847551 -237816802 + MIR SINE MIR 8 183 -79 637 217 30 18 chr1 4847655 4847821 -237816532 - MER96B DNA MER1_type? -234 183 16 3813 152 126 32 chr1 4848306 4849061 -237815292 - LTR1B LTR ERV1 0 826 1 186 103 0 0 chr1 4851391 4851420 -237812933 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 466 354 143 0 chr1 4851726 4851949 -237812404 + MIR SINE MIR 5 259 -3 229 296 70 0 chr1 4852168 4852239 -237812114 + MIR SINE MIR 60 135 -127 1214 151 11 0 chr1 4852697 4852882 -237811471 + AluSg/x SINE Alu 119 305 -7 799 133 24 12 chr1 4852913 4853079 -237811274 + GA-rich Low_complexity Low_complexity 4 171 0 853 330 142 19 chr1 4853126 4853914 -237810439 - L2 LINE L2 -376 2938 2054 429 264 16 24 chr1 4854399 4854524 -237809829 - MIR SINE MIR -35 227 104 571 309 73 16 chr1 4855986 4856177 -237808176 + MIR SINE MIR 48 249 -13 1169 175 79 21 chr1 4856342 4856633 -237807720 - MLT2D LTR ERVL 0 414 107 798 79 0 40 chr1 4856634 4856760 -237807593 - L1PA8 LINE L1 0 6172 6052 * 7574 31 6 3 chr1 4856755 4857848 -237806505 - L1PA4 LINE L1 -3 6152 5058 306 359 78 51 chr1 4857965 4858221 -237806132 + L1M4 LINE L1 3085 3347 -2799 200 158 18 0 chr1 4859303 4859360 -237804993 + (CA)n Simple_repeat Simple_repeat 1 58 0 320 368 21 7 chr1 4860188 4860332 -237804021 - MIR SINE MIR -14 248 103 406 247 11 0 chr1 4860712 4860805 -237803548 + L2 LINE L2 3179 3272 0 229 248 9 9 chr1 4860805 4860914 -237803439 + GA-rich Low_complexity Low_complexity 2 110 0 307 282 18 45 chr1 4862405 4862515 -237801838 - MER5B DNA MER1_type -36 142 36 226 336 179 9 chr1 4863380 4863603 -237800750 + MIR SINE MIR 2 262 0 234 62 0 0 chr1 4864277 4864309 -237800044 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 339 283 70 89 chr1 4864310 4864568 -237799785 - L2 LINE L2 -15 3298 3046 636 313 119 13 chr1 4865065 4865442 -237798911 - L2 LINE L2 -443 2871 2455 1830 195 120 24 chr1 4865527 4865802 -237798551 - MLT1C LTR MaLR -1 466 219 2147 101 3 0 chr1 4865802 4866088 -237798265 + AluSp SINE Alu 1 287 -26 372 77 0 0 chr1 4866088 4866140 -237798213 + (CA)n Simple_repeat Simple_repeat 2 53 0 1830 195 120 24 chr1 4866140 4866288 -237798065 - MLT1C LTR MaLR -247 220 1 340 255 97 0 chr1 4867533 4867645 -237796708 + MIR SINE MIR 8 133 -75 237 268 0 56 chr1 4868727 4868798 -237795555 + MIR3 SINE MIR 138 204 -4 263 335 44 0 chr1 4869087 4869245 -237795108 - L1ME4a LINE L1 -2 6119 5955 414 321 103 19 chr1 4869258 4869520 -237794833 - L1ME4a LINE L1 -224 5897 5614 255 311 205 6 chr1 4869538 4869699 -237794654 + MIR SINE MIR 70 262 0 1007 189 41 5 chr1 4873434 4873630 -237790723 - L1MD2 LINE L1 -3 6356 6154 207 0 0 0 chr1 4873630 4873653 -237790700 + (TG)n Simple_repeat Simple_repeat 2 24 0 2182 91 0 20 chr1 4873716 4874012 -237790341 - AluSg SINE Alu -16 294 5 3961 224 39 50 chr1 4874014 4875033 -237789320 - L1MD2 LINE L1 -409 5833 4805 2174 110 7 3 chr1 4875033 4875334 -237789019 - AluSq SINE Alu -11 302 1 3961 224 39 50 chr1 4875334 4875764 -237788589 - L1MD2 LINE L1 -1437 4805 4372 2301 86 0 19 chr1 4875764 4876077 -237788276 + AluY SINE Alu 1 307 -4 3961 224 39 50 chr1 4876077 4876089 -237788264 - L1MD2 LINE L1 -1870 4372 4361 1869 134 3 26 chr1 4876089 4876394 -237787959 + AluSg SINE Alu 1 298 -12 3961 224 39 50 chr1 4876394 4876836 -237787517 - L1MD2 LINE L1 -1881 4361 3956 207 167 0 0 chr1 4877111 4877153 -237787200 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 621 170 79 6 chr1 4878116 4878281 -237786072 + MER96B DNA MER1_type? 1 177 -240 260 303 220 8 chr1 4879322 4879454 -237784899 - MIR SINE MIR -54 208 49 252 333 0 0 chr1 4880458 4880587 -237783766 - L1ME4a LINE L1 -5 6116 5988 467 59 0 15 chr1 4880948 4881016 -237783337 + (TGAA)n Simple_repeat Simple_repeat 2 68 0 554 310 59 5 chr1 4881596 4881783 -237782570 - MIR SINE MIR -63 199 3 429 327 140 5 chr1 4881796 4882010 -237782343 + MIR SINE MIR 16 258 -4 308 287 74 9 chr1 4882704 4882812 -237781541 - MIR SINE MIR -124 138 24 187 287 49 91 chr1 4882871 4882967 -237781386 + L2 LINE L2 3176 3266 -47 2336 90 3 7 chr1 4882967 4883277 -237781076 - AluSq SINE Alu -4 309 1 187 287 49 91 chr1 4883277 4883323 -237781030 + L2 LINE L2 3266 3312 -1 249 83 0 0 chr1 4883332 4883368 -237780985 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 370 260 24 32 chr1 4883469 4883592 -237780761 + MIR SINE MIR 107 228 -34 1403 184 26 22 chr1 4884450 4884722 -237779631 - AluJo SINE Alu -1 311 39 2290 102 0 13 chr1 4885782 4886096 -237778257 + AluSx SINE Alu 1 310 -2 315 146 0 0 chr1 4887094 4887149 -237777204 + (GGGGA)n Simple_repeat Simple_repeat 4 58 0 338 251 31 115 chr1 4890183 4890243 -237774110 + MER69A DNA AcHobo 1 64 -2462 982 257 30 5 chr1 4890243 4890445 -237773908 + MER63A DNA MER1_type 1 207 -3 338 251 31 115 chr1 4890445 4890535 -237773818 + MER69A DNA AcHobo 64 134 -2392 1547 160 7 28 chr1 4890535 4890822 -237773531 + AluJo SINE Alu 24 304 -8 338 251 31 115 chr1 4890822 4890861 -237773492 + MER69A DNA AcHobo 134 175 -2 870 256 85 50 chr1 4891246 4891648 -237772705 + Charlie8 DNA MER1_type 56 471 -1946 254 219 96 14 chr1 4891659 4891732 -237772621 - MER91C DNA MER1_type -30 110 32 554 311 75 43 chr1 4892050 4892372 -237771981 + L2 LINE L2 2941 3272 0 204 40 0 0 chr1 4892382 4892407 -237771946 + (TGGA)n Simple_repeat Simple_repeat 4 28 0 235 239 15 30 chr1 4893266 4893333 -237771020 + CT-rich Low_complexity Low_complexity 2 67 0 292 286 26 78 chr1 4894010 4894164 -237770189 + L2 LINE L2 3165 3310 -3 21 0 0 0 chr1 4894192 4894213 -237770140 + AT_rich Low_complexity Low_complexity 1 21 0 943 241 57 75 chr1 4894260 4894403 -237769950 - L1ME4a LINE L1 -3 6118 5974 207 0 0 0 chr1 4894403 4894426 -237769927 + (TTG)n Simple_repeat Simple_repeat 2 24 0 943 241 57 75 chr1 4894426 4894577 -237769776 - L1ME4a LINE L1 -147 5974 5822 1630 96 0 237 chr1 4894577 4894973 -237769380 - AluSx SINE Alu 0 302 1 378 0 0 0 chr1 4894982 4895024 -237769329 + (TG)n Simple_repeat Simple_repeat 2 43 0 2162 77 0 11 chr1 4895024 4895310 -237769043 - AluY SINE Alu -28 283 1 943 241 57 75 chr1 4895310 4895493 -237768860 - L1ME4a LINE L1 -305 5816 5638 3825 91 0 8 chr1 4895493 4896011 -237768342 + MER75 DNA T2_type 1 514 0 681 236 127 0 chr1 4896044 4896201 -237768152 + MER45A DNA AcHobo 2 178 0 2672 93 8 3 chr1 4896206 4896559 -237767794 - THE1A LTR MaLR 0 355 1 1896 177 41 66 chr1 4896758 4897198 -237767155 - MSTB1 LTR MaLR -3 429 1 1064 234 162 13 chr1 4897384 4897778 -237766575 - L1MC4 LINE L1 -143 7899 7447 5068 110 7 21 chr1 4897813 4898089 -237766264 - L1PA10 LINE L1 -1 6167 5889 2455 74 0 3 chr1 4898089 4898401 -237765952 - AluY SINE Alu 0 311 1 5068 110 7 21 chr1 4898401 4898970 -237765383 - L1PA10 LINE L1 -279 5889 5334 686 217 29 11 chr1 4898966 4899141 -237765212 - L1MC4 LINE L1 -627 7415 7238 * 1494 161 140 9 chr1 4899144 4899493 -237764860 - L1MC4 LINE L1 -958 7084 6690 378 0 0 0 chr1 4899494 4899536 -237764817 + (CA)n Simple_repeat Simple_repeat 1 42 0 981 147 76 5 chr1 4899537 4899735 -237764618 - MER2 DNA MER2_type -1 344 133 1192 103 16 0 chr1 4899736 4899921 -237764432 - MER30 DNA MER1_type 0 230 43 448 220 8 42 chr1 4900058 4900176 -237764177 + MER117 DNA MER1_type 66 179 -18 323 296 117 39 chr1 4901748 4901978 -237762375 - L2 LINE L2 0 3313 3066 195 294 15 15 chr1 4901970 4902038 -237762315 - L2 LINE L2 -5 3308 3241 * 243 239 0 0 chr1 4903451 4903518 -237760835 + (TG)n Simple_repeat Simple_repeat 1 67 0 496 278 139 0 chr1 4904086 4904259 -237760094 - MIR SINE MIR -35 227 31 192 271 29 57 chr1 4904263 4904333 -237760020 - MIR SINE MIR -55 153 86 203 138 0 0 chr1 4905245 4905274 -237759079 + (TGAG)n Simple_repeat Simple_repeat 1 29 0 1080 124 0 0 chr1 4905275 4905453 -237758900 + (TGAA)n Simple_repeat Simple_repeat 3 180 0 205 273 36 0 chr1 4906461 4906516 -237757837 - L2 LINE L2 -14 3299 3243 478 250 96 6 chr1 4906573 4906729 -237757624 - MER117 DNA MER1_type -27 170 1 2193 196 44 4 chr1 4908040 4908560 -237755793 - MER74A LTR ERVL -2 556 16 287 265 0 15 chr1 4909074 4909142 -237755211 - MIR SINE MIR -77 185 119 2068 103 7 3 chr1 4909171 4909471 -237754882 + AluSx SINE Alu 1 301 -11 286 317 10 19 chr1 4909542 4909646 -237754707 + MIR3 SINE MIR 106 208 0 340 303 40 0 chr1 4909812 4909911 -237754442 - L2 LINE L2 -2 3270 3168 235 88 0 0 chr1 4912595 4912629 -237751724 + MIR SINE MIR 112 145 -63 200 327 0 0 chr1 4915863 4915915 -237748438 - MIR SINE MIR -76 132 81 270 316 72 20 chr1 4915967 4916119 -237748234 - L2 LINE L2 -75 3238 3079 349 292 0 0 chr1 4916706 4916802 -237747551 + (TG)n Simple_repeat Simple_repeat 1 96 0 317 315 11 28 chr1 4916951 4917129 -237747224 + GA-rich Low_complexity Low_complexity 3 177 0 1502 219 114 6 chr1 4917879 4918066 -237746287 - MLT1B LTR MaLR 0 390 225 222 37 0 0 chr1 4918066 4918093 -237746260 + (GA)n Simple_repeat Simple_repeat 2 28 0 1502 219 114 6 chr1 4918093 4918257 -237746096 - MLT1B LTR MaLR -165 225 1 199 354 50 0 chr1 4918317 4918416 -237745937 + MIR SINE MIR 37 140 -68 237 309 112 59 chr1 4919748 4919900 -237744453 - MER5B DNA MER1_type -2 176 17 744 296 21 0 chr1 4919962 4920202 -237744151 + MIR SINE MIR 16 260 -2 720 175 0 22 chr1 4920221 4920404 -237743949 + (CAT)n Simple_repeat Simple_repeat 1 179 0 636 170 38 31 chr1 4920395 4920716 -237743637 + (CACCAT)n Simple_repeat Simple_repeat 1 323 0 * 3317 130 2 2 chr1 4920817 4921770 -237742583 - L1P4 LINE L1 -382 5783 4831 661 153 8 15 chr1 4921770 4921901 -237742452 - MLT1A1 LTR MaLR -235 130 1 194 304 18 0 chr1 4922394 4922450 -237741903 - MIR SINE MIR -89 173 117 769 244 96 46 chr1 4922551 4922863 -237741490 - MLT1C LTR MaLR -6 587 122 1999 113 0 20 chr1 4922863 4923164 -237741189 - AluSx SINE Alu 0 312 18 769 244 96 46 chr1 4923164 4923207 -237741146 - MLT1C LTR MaLR -471 122 83 444 293 57 0 chr1 4924148 4924288 -237740065 + MIR SINE MIR 109 256 -6 339 291 29 0 chr1 4924621 4924724 -237739629 + MIR SINE MIR 36 141 -67 388 263 51 0 chr1 4924758 4924876 -237739477 + MER117 DNA MER1_type 69 192 -5 2162 81 3 3 chr1 4925107 4925415 -237738938 - AluSx SINE Alu 0 308 1 1777 172 53 42 chr1 4925430 4925791 -237738562 + MLT1A1 LTR MaLR 1 365 0 2542 159 29 31 chr1 5026484 5026988 -237637365 + MER41B LTR ERV1 140 478 0 4712 66 5 0 chr1 5027817 5028405 -237635948 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr1 5028684 5028706 -237635647 + (CA)n Simple_repeat Simple_repeat 2 23 0 242 315 45 0 chr1 5031999 5032110 -237632243 + MIR SINE MIR 113 228 -34 740 247 18 12 chr1 5032385 5032555 -237631798 - MER45A DNA AcHobo 0 178 8 205 267 56 22 chr1 5032638 5032728 -237631625 - MIR SINE MIR -81 181 89 290 274 235 6 chr1 5032873 5033052 -237631301 + MIR SINE MIR 12 231 -31 208 106 21 85 chr1 5033385 5033432 -237630921 + L2 LINE L2 3199 3242 -71 284 118 20 0 chr1 5033434 5033485 -237630868 + MADE1 DNA Mariner 2 53 -27 308 91 127 18 chr1 5033497 5033552 -237630801 + L2 LINE L2 3246 3306 -7 1832 170 5 86 chr1 5033827 5034063 -237630290 - MLT1A1 LTR MaLR -2 363 170 2032 139 7 3 chr1 5034063 5034350 -237630003 - AluSx SINE Alu -24 288 1 1832 170 5 86 chr1 5034350 5034508 -237629845 - MLT1A1 LTR MaLR -195 170 1 2351 134 20 3 chr1 5034607 5034965 -237629388 - THE1B LTR MaLR 0 364 1 1966 177 65 58 chr1 5035157 5035621 -237628732 + MLT1C LTR MaLR 1 467 0 791 275 31 64 chr1 5035625 5035952 -237628401 + MLT1I LTR MaLR 1 316 -93 3371 56 0 77 chr1 5035963 5036003 -237628350 - MLT2A1 LTR ERVL 0 444 403 183 80 0 0 chr1 5036003 5036028 -237628325 + (TA)n Simple_repeat Simple_repeat 2 26 0 3371 56 0 77 chr1 5036028 5036061 -237628292 - MLT2A1 LTR ERVL -41 403 369 252 0 0 0 chr1 5036061 5036089 -237628264 + (TC)n Simple_repeat Simple_repeat 2 29 0 3371 56 0 77 chr1 5036089 5036495 -237627858 - MLT2A1 LTR ERVL -75 369 1 2100 58 11 0 chr1 5036495 5036773 -237627580 - HERVL-A1 LTR ERVL 0 5654 5374 1160 236 45 62 chr1 5038060 5038579 -237625774 + MLT1E3 LTR MaLR 3 601 -23 1511 163 83 18 chr1 5038604 5038880 -237625473 - AluJb SINE Alu -18 294 1 2116 146 42 22 chr1 5039862 5040219 -237624134 - THE1B LTR MaLR 0 364 1 10086 109 82 9 chr1 5040219 5041692 -237622661 - THE1B-int LTR MaLR 0 1580 1 2169 132 36 33 chr1 5041692 5042055 -237622298 - THE1B LTR MaLR 0 364 1 2637 207 100 12 chr1 5042118 5042718 -237621635 + MLT1E1 LTR MaLR 2 654 0 2353 192 65 73 chr1 5042801 5043447 -237620906 - LTR48B LTR ERV1 0 644 4 8228 198 40 42 chr1 5043546 5045966 -237618387 - LTR48B-int LTR ERV1 -159 6172 3712 522 239 0 35 chr1 5046236 5046436 -237617917 - LTR48B-int LTR ERV1 -2378 2493 1745 499 191 9 0 chr1 5046623 5046728 -237617625 - LTR48B-int LTR ERV1 -2878 3453 3348 1983 168 52 5 chr1 5046805 5047174 -237617179 - LTR48B-int LTR ERV1 -2991 3340 2955 5013 201 113 118 chr1 5047207 5047469 -237616884 - LTR48B-int LTR ERV1 -4228 2103 1841 1552 82 5 0 chr1 5047469 5047675 -237616678 - L1PA7 LINE L1 -8 6146 5940 5013 201 113 118 chr1 5047675 5048327 -237616026 - LTR48B-int LTR ERV1 -4490 1841 1187 234 235 59 59 chr1 5048327 5048395 -237615958 - tRNA-Glu-GAG tRNA tRNA -1 74 7 5013 201 113 118 chr1 5048395 5049523 -237614830 - LTR48B-int LTR ERV1 -5144 1187 3 2576 176 37 82 chr1 5049528 5050200 -237614153 - LTR48B LTR ERV1 -1 643 2 302 153 17 0 chr1 5050260 5050319 -237614034 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 376 136 17 0 chr1 5050322 5050381 -237613972 - MLT1E1 LTR MaLR -422 232 173 242 186 114 0 chr1 5050483 5050553 -237613800 - MLT1E1 LTR MaLR -482 172 95 218 257 257 28 chr1 5050792 5050936 -237613417 + MIR SINE MIR 51 227 -35 482 315 67 44 chr1 5052059 5052329 -237612024 - MLT1K LTR MaLR -4 584 309 261 336 171 9 chr1 5052414 5052625 -237611728 + MIR SINE MIR 8 252 -10 189 0 0 0 chr1 5053036 5053057 -237611296 + (CATTG)n Simple_repeat Simple_repeat 5 25 0 315 298 35 18 chr1 5053397 5053511 -237610842 + MIR SINE MIR 90 205 -57 180 125 0 0 chr1 5053602 5053634 -237610719 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 256 330 21 0 chr1 5054089 5054186 -237610167 + MIR SINE MIR 78 176 -86 206 183 0 17 chr1 5054263 5054301 -237610052 + CT-rich Low_complexity Low_complexity 2 40 -20 2419 112 94 5 chr1 5054301 5054694 -237609659 + MSTA LTR MaLR 1 428 0 206 183 0 17 chr1 5054694 5054715 -237609638 + CT-rich Low_complexity Low_complexity 40 60 0 317 157 0 0 chr1 5055999 5056050 -237608303 - MLT2F LTR ERVL 0 663 613 264 245 0 31 chr1 5056054 5056152 -237608201 + (TATATG)n Simple_repeat Simple_repeat 1 95 0 244 163 12 105 chr1 5056152 5056172 -237608181 - MADE1 DNA Mariner 0 80 60 216 0 0 0 chr1 5056172 5056196 -237608157 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 244 163 12 105 chr1 5056196 5056219 -237608134 - MADE1 DNA Mariner -20 60 36 2279 107 3 0 chr1 5056219 5056519 -237607834 + AluSp SINE Alu 1 301 -12 244 163 12 105 chr1 5056519 5056560 -237607793 - MADE1 DNA Mariner -44 36 3 410 285 6 6 chr1 5056562 5056741 -237607612 + (TA)n Simple_repeat Simple_repeat 2 180 0 1702 194 94 11 chr1 5056745 5057106 -237607247 + MSTD LTR MaLR 3 393 -3 279 315 0 0 chr1 5057202 5057345 -237607008 + (TA)n Simple_repeat Simple_repeat 1 143 0 1488 242 24 11 chr1 5057345 5057717 -237606636 - MLT2C1 LTR ERVL -20 377 1 2152 230 63 8 chr1 5057985 5058464 -237605889 - MER70B LTR ERVL -73 505 1 2721 96 6 3 chr1 5058501 5058864 -237605489 + THE1B LTR MaLR 1 364 0 10912 96 34 34 chr1 5058865 5060444 -237603909 + THE1B-int LTR MaLR 2 1580 0 2325 125 17 8 chr1 5060446 5060805 -237603548 + THE1B LTR MaLR 3 364 0 7309 52 0 0 chr1 5060828 5061807 -237602546 - L1PA5 LINE L1 0 6154 5175 33506 59 1 3 chr1 5061818 5065138 -237599215 - L1PA4 LINE L1 0 6155 2851 2473 78 0 3 chr1 5065138 5065447 -237598906 - AluY SINE Alu -3 308 1 33506 59 1 3 chr1 5065447 5068293 -237596060 - L1PA4 LINE L1 -3304 2851 1 225 258 296 9 chr1 5068308 5068420 -237595933 - MIR SINE MIR -113 149 14 239 364 0 0 chr1 5068503 5068580 -237595773 + MIR SINE MIR 71 147 -61 569 233 0 6 chr1 5069355 5069535 -237594818 + CT-rich Low_complexity Low_complexity 2 180 0 332 255 59 10 chr1 5071001 5071103 -237593250 - MIR SINE MIR -72 190 84 2034 176 50 31 chr1 5071191 5071612 -237592741 + MLT1C LTR MaLR 2 430 -37 438 173 27 13 chr1 5072520 5072670 -237591683 + (CA)n Simple_repeat Simple_repeat 2 153 0 192 200 0 0 chr1 5073938 5073978 -237590375 + CT-rich Low_complexity Low_complexity 1 40 0 872 235 38 17 chr1 5075314 5075542 -237588811 - MLT1A1 LTR MaLR 0 365 133 1822 175 71 76 chr1 5075542 5075922 -237588431 - MSTB1 LTR MaLR 0 432 53 7210 58 0 2 chr1 5075922 5077152 -237587201 - L1PA6 LINE L1 0 6154 4923 1822 175 71 76 chr1 5077152 5077205 -237587148 - MSTB1 LTR MaLR -379 53 1 837 131 15 7 chr1 5077205 5077341 -237587012 - MLT1A1 LTR MaLR -225 140 4 2406 113 34 6 chr1 5078513 5078866 -237585487 + THE1B LTR MaLR 1 363 -1 2471 129 60 27 chr1 5079456 5079968 -237584385 + MLT2A2 LTR ERVL 3 554 0 581 320 41 5 chr1 5081417 5081614 -237582739 + MIR SINE MIR 23 226 -36 21 36 0 0 chr1 5081662 5081690 -237582663 + AT_rich Low_complexity Low_complexity 1 28 0 350 269 77 47 chr1 5083101 5083409 -237580944 + L1MC/D LINE L1 5290 5597 -899 263 388 13 40 chr1 5083494 5083646 -237580707 - MIR SINE MIR -81 181 34 1863 243 67 47 chr1 5083848 5084968 -237579385 + HAL1 LINE L1 25 1200 -1307 1027 195 25 66 chr1 5085044 5085285 -237579068 - MIR SINE MIR -29 233 3 1679 244 69 103 chr1 5085311 5086345 -237578008 + HAL1 LINE L1 1280 2275 -232 2016 125 14 0 chr1 5086345 5086642 -237577711 + AluSg SINE Alu 1 301 -9 1679 244 69 103 chr1 5086642 5086714 -237577639 + HAL1 LINE L1 2275 2348 -159 410 92 0 0 chr1 5087190 5087255 -237577098 + L1PA7 LINE L1 6090 6154 0 324 175 12 12 chr1 5087271 5087351 -237577002 + HAL1 LINE L1 2316 2395 -112 5632 105 8 5 chr1 5087418 5088216 -237576137 - L1PA13 LINE L1 -2 6161 5362 1291 184 23 13 chr1 5088216 5088525 -237575828 + L1P LINE L1 3064 3375 -2771 236 246 18 0 chr1 5088517 5088574 -237575779 + HAL1 LINE L1 2440 2497 -10 * 233 282 163 19 chr1 5088606 5088815 -237575538 + L1ME4a LINE L1 5815 6053 -68 1989 161 33 41 chr1 5089319 5089686 -237574667 - THE1B LTR MaLR 0 364 1 680 299 30 5 chr1 5089964 5090165 -237574188 - MER63A DNA MER1_type -4 206 1 234 264 42 14 chr1 5090979 5091051 -237573302 - L2 LINE L2 -5 3308 3235 217 243 70 87 chr1 5091145 5091330 -237573023 + L2 LINE L2 2833 3014 -299 1788 197 8 31 chr1 5092010 5092366 -237571987 - MSTD LTR MaLR -48 348 1 1772 246 59 17 chr1 5092375 5092952 -237571401 + L1ME2 LINE L1 5318 5918 -246 394 294 92 20 chr1 5093076 5093133 -237571220 + MLT1H LTR MaLR 23 74 -335 552 113 0 0 chr1 5093133 5093213 -237571140 - MADE1 DNA Mariner 0 80 1 394 294 92 20 chr1 5093213 5093410 -237570943 + MLT1H LTR MaLR 74 269 -140 309 308 77 8 chr1 5093447 5093577 -237570776 + MLT1H LTR MaLR 411 549 0 1988 118 16 3 chr1 5094112 5094418 -237569935 + AluY SINE Alu 2 311 0 2030 181 20 45 chr1 5094547 5094999 -237569354 + L1MB3 LINE L1 5740 6179 -4 2073 110 10 0 chr1 5095031 5095323 -237569030 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr1 5096383 5096405 -237567948 + (CA)n Simple_repeat Simple_repeat 2 23 0 1812 182 20 47 chr1 5096968 5097157 -237567196 + MLT1B LTR MaLR 1 194 -196 2055 121 0 0 chr1 5097157 5097454 -237566899 + AluSg1 SINE Alu 1 297 -12 1812 182 20 47 chr1 5097454 5097665 -237566688 + MLT1B LTR MaLR 194 390 0 1902 146 58 28 chr1 5098663 5099027 -237565326 + THE1C LTR MaLR 1 375 0 1682 200 104 0 chr1 5100315 5100660 -237563693 - MLT1B LTR MaLR 0 390 10 353 303 35 21 chr1 5100792 5100937 -237563416 + L2 LINE L2 3126 3272 0 2154 142 27 33 chr1 5101929 5102295 -237562058 - THE1B LTR MaLR 0 364 1 11890 95 6 1 chr1 5102295 5103867 -237560486 - THE1B-int LTR MaLR 0 1580 1 2129 144 31 11 chr1 5103867 5104222 -237560131 - THE1B LTR MaLR 0 364 3 336 282 162 7 chr1 5104227 5104369 -237559984 + MIR SINE MIR 85 248 -14 25 0 0 0 chr1 5105050 5105075 -237559278 + AT_rich Low_complexity Low_complexity 1 25 0 1251 58 0 0 chr1 5105099 5105253 -237559100 - L1PA8 LINE L1 -6 6166 6013 260 308 47 18 chr1 5105720 5105889 -237558464 - L1MEd LINE L1 -4863 1256 1083 26 0 0 0 chr1 5106080 5106106 -237558247 + AT_rich Low_complexity Low_complexity 1 26 0 211 105 0 88 chr1 5106457 5106514 -237557839 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2455 125 22 5 chr1 5106947 5107316 -237557037 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr1 5107707 5107732 -237556621 + AT_rich Low_complexity Low_complexity 1 25 0 2219 108 3 0 chr1 5107760 5108067 -237556286 + AluSc SINE Alu 1 308 -1 2022 191 3 6 chr1 5108092 5108448 -237555905 - MLT1A1 LTR MaLR -7 358 4 450 261 48 107 chr1 5110030 5110209 -237554144 - MIR SINE MIR -3 259 100 2171 116 0 0 chr1 5110209 5110512 -237553841 + AluSg SINE Alu 1 303 -7 450 261 48 107 chr1 5110512 5110604 -237553749 - MIR SINE MIR -162 100 4 1434 254 144 39 chr1 5111159 5111824 -237552529 - MER21B LTR ERV1 -125 738 4 1210 200 57 83 chr1 5112721 5113071 -237551282 - MLT1A2 LTR MaLR -33 341 1 1966 129 3 3 chr1 5113352 5113654 -237550699 - AluSx SINE Alu -10 302 1 2033 202 57 9 chr1 5114756 5115196 -237549157 - MLT1C LTR MaLR -6 461 1 388 316 111 22 chr1 5115924 5116359 -237547994 + L1ME4a LINE L1 5442 5918 -203 303 249 32 56 chr1 5116367 5116599 -237547754 + HAL1b LINE L1 1190 1307 -41 681 199 0 0 chr1 5116977 5117153 -237547200 + (TG)n Simple_repeat Simple_repeat 1 176 0 21 0 0 0 chr1 5117283 5117304 -237547049 + AT_rich Low_complexity Low_complexity 1 21 0 238 216 0 20 chr1 5117779 5117830 -237546523 + (TG)n Simple_repeat Simple_repeat 1 50 0 1474 242 59 47 chr1 5118815 5119085 -237545268 + MLT1D LTR MaLR 2 267 -238 2385 121 8 22 chr1 5119085 5119450 -237544903 - THE1B LTR MaLR -4 360 1 11474 100 20 4 chr1 5119450 5121005 -237543348 - THE1B-int LTR MaLR 0 1580 1 2343 137 8 14 chr1 5121005 5121371 -237542982 - THE1B LTR MaLR 0 364 1 1474 242 59 47 chr1 5121371 5121593 -237542760 + MLT1D LTR MaLR 266 502 -3 202 143 0 24 chr1 5122780 5122822 -237541531 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 1813 302 3 2 chr1 5123168 5123757 -237540596 + HERVK13 LTR ERVK 1460 2049 -6067 2327 138 24 8 chr1 5123823 5124192 -237540161 - THE1C LTR MaLR 0 375 1 2945 207 22 30 chr1 5125269 5125442 -237538911 + MER77 LTR ERV1 1 174 -489 1633 202 159 43 chr1 5125442 5125908 -237538445 - MLT2B1 LTR ERVL 0 520 1 2945 207 22 30 chr1 5125908 5126265 -237538088 + MER77 LTR ERV1 174 577 -86 2336 100 21 0 chr1 5126265 5126594 -237537759 - L1PA13 LINE L1 -15 6148 5813 2945 207 22 30 chr1 5126594 5126675 -237537678 + MER77 LTR ERV1 577 657 -6 342 300 22 0 chr1 5127460 5127550 -237536803 - MER117 DNA MER1_type 0 197 106 1917 176 29 3 chr1 5127902 5128282 -237536071 + MLT1B LTR MaLR 1 390 0 1749 169 76 10 chr1 5130499 5130863 -237533490 - MLT1B LTR MaLR -1 466 1 2345 88 3 0 chr1 5131367 5131662 -237532691 - AluSq SINE Alu -12 301 6 25 0 0 0 chr1 5131670 5131695 -237532658 + AT_rich Low_complexity Low_complexity 1 25 0 2476 196 9 30 chr1 5131696 5132222 -237532131 - MLT2B2 LTR ERVL 0 515 1 279 0 0 0 chr1 5133130 5133161 -237531192 + (TA)n Simple_repeat Simple_repeat 2 32 0 2391 228 61 32 chr1 5134642 5134708 -237529645 - L1MB7 LINE L1 0 6183 6120 1984 100 3 57 chr1 5134708 5135033 -237529320 + AluSx SINE Alu 1 309 0 2238 90 0 7 chr1 5135033 5135322 -237529031 + AluSg SINE Alu 23 309 -1 2391 228 61 32 chr1 5135322 5135992 -237528361 - L1MB7 LINE L1 -62 6121 5444 237 65 0 0 chr1 5138721 5138752 -237525601 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 688 82 0 45 chr1 5139030 5139140 -237525213 - AluSp/q SINE Alu -5 308 204 251 212 0 15 chr1 5139517 5139583 -237524770 + CT-rich Low_complexity Low_complexity 4 68 0 305 269 65 11 chr1 5139623 5139716 -237524637 - MIR SINE MIR -151 111 14 219 316 77 31 chr1 5140862 5141058 -237523295 - L2 LINE L2 -261 3011 2807 197 338 0 15 chr1 5142347 5142415 -237521938 - MIR SINE MIR -171 91 25 2110 117 158 61 chr1 5143800 5144243 -237520110 - LTR19A LTR ERV1 0 486 1 592 25 37 0 chr1 5144773 5144854 -237519499 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1749 183 0 16 chr1 5145273 5145590 -237518763 - AluJo SINE Alu 0 312 1 4838 127 10 32 chr1 5146413 5147190 -237517163 + MER4D LTR ERV1 4 763 -140 2003 160 3 0 chr1 5147191 5147491 -237516862 + AluSq SINE Alu 1 301 -12 690 125 10 0 chr1 5147495 5147599 -237516754 + AluSg/x SINE Alu 127 231 -81 207 0 0 0 chr1 5147620 5147643 -237516710 + (TG)n Simple_repeat Simple_repeat 2 24 0 253 302 0 0 chr1 5147645 5147731 -237516622 - L1MC4 LINE L1 -1339 6703 6618 1319 112 31 40 chr1 5147731 5147955 -237516398 + MER50 LTR ERV1 207 428 -306 231 109 65 0 chr1 5147946 5147992 -237516361 - LTR66 LTR ERVL -161 449 401 * 762 175 7 35 chr1 5147979 5148095 -237516258 + MER4D LTR ERV1 758 871 -32 2405 162 25 23 chr1 5148095 5148528 -237515825 - MER57B LTR ERV1 0 434 1 762 175 7 35 chr1 5148528 5148554 -237515799 + MER4D LTR ERV1 871 896 -7 4261 133 18 32 chr1 5148732 5149448 -237514905 - MER50 LTR ERV1 -28 706 1 540 250 76 117 chr1 5150512 5151077 -237513276 - LTR48B LTR ERV1 0 542 1 277 306 8 8 chr1 5151079 5151203 -237513150 - L1ME3 LINE L1 -27 6143 6020 3568 112 21 41 chr1 5151229 5151810 -237512543 + LTR24B LTR ERV1 1 569 -7 1589 243 133 39 chr1 5151892 5152110 -237512243 - L1ME3 LINE L1 -208 5962 5766 2491 163 74 0 chr1 5152110 5152545 -237511808 + LTR24 LTR ERV1 1 467 0 1589 243 133 39 chr1 5152545 5152870 -237511483 - L1ME3 LINE L1 -404 5766 5340 2627 130 36 25 chr1 5152870 5153346 -237511007 + MER31A LTR ERV1 5 485 0 1589 243 133 39 chr1 5153346 5153431 -237510922 - L1ME3 LINE L1 -830 5340 5264 1959 190 54 30 chr1 5153444 5153987 -237510366 - MLT2A2 LTR ERVL 0 554 1 5348 81 3 1 chr1 5154141 5154822 -237509531 - LTR8 LTR ERV1 -9 682 1 1666 171 13 17 chr1 5155134 5155432 -237508921 + AluJo SINE Alu 1 297 -15 7673 243 77 43 chr1 5155437 5157866 -237506487 - L1ME1 LINE L1 -5 6230 3885 360 0 0 0 chr1 5157866 5157906 -237506447 + (TG)n Simple_repeat Simple_repeat 2 41 0 7673 243 77 43 chr1 5157906 5159317 -237505036 - L1ME1 LINE L1 -2350 3885 2524 721 241 39 15 chr1 5159317 5159520 -237504833 - MER63A DNA MER1_type -1 209 2 180 0 0 0 chr1 5159521 5159541 -237504812 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7673 243 77 43 chr1 5159541 5159665 -237504688 - L1ME1 LINE L1 -3710 2525 2179 6192 196 31 5 chr1 5159674 5161698 -237502655 - L1MC1 LINE L1 -5 6608 4519 231 36 0 0 chr1 5161698 5161726 -237502627 + (TG)n Simple_repeat Simple_repeat 1 28 0 6192 196 31 5 chr1 5161726 5161845 -237502508 - L1MC1 LINE L1 -2094 4519 4405 1098 183 139 40 chr1 5161846 5162147 -237502206 - L1MC1 LINE L1 -6038 388 58 2855 287 79 45 chr1 5162165 5162517 -237501836 - L1ME1 LINE L1 -4216 2180 1841 2691 93 50 24 chr1 5162517 5162934 -237501419 - MSTA LTR MaLR 0 428 1 2855 287 79 45 chr1 5162934 5164058 -237500295 - L1ME1 LINE L1 -4555 1841 613 1921 168 26 0 chr1 5164058 5164362 -237499991 - AluJo SINE Alu 0 312 1 2855 287 79 45 chr1 5164362 5164928 -237499425 - L1ME1 LINE L1 -5783 613 68 181 328 135 29 chr1 5165058 5165302 -237499051 + L2 LINE L2 2329 2598 -716 2463 168 18 18 chr1 5165609 5166043 -237498310 - Tigger2a DNA MER2_type 0 434 1 242 233 0 122 chr1 5166217 5166307 -237498046 + L2 LINE L2 3235 3313 0 498 359 113 0 chr1 5166381 5166699 -237497654 - L3 LINE CR1 -3 1574 1221 186 349 0 12 chr1 5166753 5166839 -237497514 - MIR SINE MIR -70 192 108 443 244 83 24 chr1 5166870 5167102 -237497251 + MLT1F LTR MaLR 311 537 -5 1219 177 89 86 chr1 5168611 5169006 -237495347 - MSTD LTR MaLR 0 396 1 540 307 12 0 chr1 5171187 5171350 -237493003 + MIR SINE MIR 80 244 -18 213 315 14 0 chr1 5171603 5171676 -237492677 + GA-rich Low_complexity Low_complexity 2 75 0 2213 103 57 14 chr1 5172187 5172536 -237491817 - THE1B LTR MaLR 0 364 1 1561 173 62 64 chr1 5174953 5175420 -237488933 + MLT1C LTR MaLR 2 467 0 687 277 40 0 chr1 5175594 5175796 -237488557 - MER20 DNA MER1_type -9 210 1 1775 174 7 3 chr1 5177083 5177376 -237486977 + AluJo SINE Alu 1 294 -18 778 191 91 0 chr1 5177873 5178072 -237486281 - MER20 DNA MER1_type -2 217 1 204 184 0 0 chr1 5178665 5178714 -237485639 + T-rich Low_complexity Low_complexity 1 49 0 360 0 0 0 chr1 5180258 5180298 -237484055 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 261 0 0 0 chr1 5181398 5181427 -237482926 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 277 308 0 34 chr1 5183827 5183944 -237480409 + CT-rich Low_complexity Low_complexity 4 116 0 388 322 0 0 chr1 5187650 5187740 -237476613 + L1MC4 LINE L1 6614 6703 -1339 * 467 223 46 9 chr1 5187666 5187777 -237476576 - L1MC4 LINE L1 -1337 6985 1978 217 246 15 31 chr1 5187953 5188018 -237476335 + (TG)n Simple_repeat Simple_repeat 1 64 0 213 214 0 0 chr1 5188163 5188205 -237476148 + (TATG)n Simple_repeat Simple_repeat 4 45 0 241 26 53 0 chr1 5188611 5188649 -237475704 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 348 273 45 30 chr1 5189745 5189877 -237474476 + MER5A DNA MER1_type 24 157 -32 269 323 31 23 chr1 5189774 5189904 -237474449 - MER5A DNA MER1_type -41 148 18 * 1535 124 22 0 chr1 5190368 5190593 -237473760 + AluSg/x SINE Alu 81 310 -2 924 226 39 42 chr1 5190819 5191057 -237473296 + L1MB3 LINE L1 5899 6137 -46 2333 81 44 0 chr1 5191057 5191352 -237473001 - AluSx SINE Alu -4 308 1 924 226 39 42 chr1 5191352 5191396 -237472957 + L1MB3 LINE L1 6137 6180 -3 725 77 0 0 chr1 5191787 5191891 -237472462 + AluY SINE Alu 208 311 0 566 51 13 0 chr1 5192565 5192643 -237471710 + (GA)n Simple_repeat Simple_repeat 2 80 0 218 104 0 21 chr1 5193148 5193196 -237471157 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 354 226 38 19 chr1 5194750 5194856 -237469497 + MIR SINE MIR 33 140 -122 270 211 3 0 chr1 5194944 5195010 -237469343 + MIR SINE MIR 86 153 -55 26 50 0 0 chr1 5199110 5199150 -237465203 + AT_rich Low_complexity Low_complexity 1 40 0 941 163 6 0 chr1 5203476 5203654 -237460699 + (ATG)n Simple_repeat Simple_repeat 1 179 0 749 206 9 0 chr1 5203666 5204008 -237460345 + (ATG)n Simple_repeat Simple_repeat 1 345 0 1078 211 9 5 chr1 5204893 5205106 -237459247 - MER58A DNA MER1_type -4 220 7 1132 185 18 21 chr1 5206991 5207274 -237457079 - MLT2B2 LTR ERVL 0 515 277 578 185 28 17 chr1 5207289 5207467 -237456886 + GA-rich Low_complexity Low_complexity 1 180 0 1299 188 4 4 chr1 5207504 5207738 -237456615 - MLT2B2 LTR ERVL -281 234 1 466 237 30 0 chr1 5207981 5208112 -237456241 + MER20 DNA MER1_type 37 171 -48 254 273 231 0 chr1 5208334 5208455 -237455898 - MIR SINE MIR -33 229 81 1573 236 102 18 chr1 5208463 5208916 -237455437 - MER77 LTR ERV1 -7 598 108 843 91 0 0 chr1 5209070 5209191 -237455162 + HERVL-A2 LTR ERVL 5534 5654 0 3155 96 7 20 chr1 5209191 5209650 -237454703 + MLT2A2 LTR ERVL 1 453 0 255 224 75 0 chr1 5210246 5210313 -237454040 + MER58A DNA MER1_type 153 224 0 654 211 0 0 chr1 5210841 5211021 -237453332 + (CA)n Simple_repeat Simple_repeat 1 180 0 2189 99 24 44 chr1 5212512 5212895 -237451458 + THE1C LTR MaLR 1 375 0 2224 135 13 21 chr1 5212983 5213361 -237450992 - THE1C LTR MaLR 0 375 1 366 282 13 39 chr1 5213396 5213552 -237450801 - L2 LINE L2 -1 3312 3161 259 280 8 51 chr1 5213769 5213887 -237450466 + MLT1H LTR MaLR 241 353 -196 285 200 158 42 chr1 5214426 5214521 -237449832 - MER103 DNA DNA -44 122 17 2258 153 10 72 chr1 5215080 5215597 -237448756 + MER31A LTR ERV1 1 485 0 1109 261 59 0 chr1 5216829 5217151 -237447202 - MER58B DNA MER1_type 0 341 1 257 272 60 85 chr1 5217169 5217343 -237447010 + L1MCc LINE L1 1281 1449 -4974 2379 94 3 0 chr1 5217343 5217641 -237446712 + AluSp SINE Alu 1 299 -14 257 272 60 85 chr1 5217641 5217701 -237446652 + L1MCc LINE L1 1449 1509 -4914 24 77 0 0 chr1 5217722 5217774 -237446579 + AT_rich Low_complexity Low_complexity 1 52 0 189 247 54 86 chr1 5217808 5217901 -237446452 + MIR3 SINE MIR 71 160 -48 358 194 10 10 chr1 5218983 5219081 -237445272 + CT-rich Low_complexity Low_complexity 3 100 0 275 299 103 26 chr1 5219606 5219723 -237444630 + L2 LINE L2 3147 3272 0 258 250 0 0 chr1 5220962 5221050 -237443303 + (CA)n Simple_repeat Simple_repeat 1 88 0 297 222 0 0 chr1 5221161 5221260 -237443093 + (CA)n Simple_repeat Simple_repeat 2 100 0 278 344 0 6 chr1 5221313 5221470 -237442883 + (CA)n Simple_repeat Simple_repeat 2 157 0 215 379 35 0 chr1 5221841 5221957 -237442396 - MIR SINE MIR -62 146 27 672 245 38 52 chr1 5222225 5222437 -237441916 - MLT1A1 LTR MaLR -31 334 126 2344 106 0 0 chr1 5222437 5222749 -237441604 - AluSx SINE Alu 0 312 1 2110 116 7 13 chr1 5223197 5223507 -237440846 - AluSx SINE Alu -4 308 1 218 369 131 6 chr1 5223522 5223698 -237440655 - L2 LINE L2 -2071 1243 1046 1126 241 55 40 chr1 5224772 5225225 -237439128 + MLT1C LTR MaLR 7 466 -1 263 257 28 46 chr1 5225233 5225342 -237439011 - MIR SINE MIR -110 152 46 226 328 16 8 chr1 5226399 5226521 -237437832 + (TG)n Simple_repeat Simple_repeat 1 123 0 312 188 0 0 chr1 5226561 5226625 -237437728 + (TG)n Simple_repeat Simple_repeat 1 64 0 222 91 0 0 chr1 5227643 5227676 -237436677 + (TGGA)n Simple_repeat Simple_repeat 2 34 0 2681 233 106 6 chr1 5228705 5229611 -237434742 - L1MC4 LINE L1 -374 7668 6568 886 251 171 6 chr1 5229650 5230001 -237434352 + MLT1C LTR MaLR 53 461 -6 2834 186 16 27 chr1 5230351 5230409 -237433944 - L1MB3 LINE L1 -1 6182 6125 2483 46 0 3 chr1 5230409 5230711 -237433642 - AluY SINE Alu -10 301 1 2834 186 16 27 chr1 5230711 5231201 -237433152 - L1MB3 LINE L1 -58 6125 5640 217 200 0 33 chr1 5231449 5231509 -237432844 + A-rich Low_complexity Low_complexity 2 59 0 315 363 131 2 chr1 5232347 5232758 -237431595 + L2 LINE L2 2511 2974 -340 1778 156 3 29 chr1 5233288 5233603 -237430750 - AluJo SINE Alu -5 307 1 243 338 14 50 chr1 5234487 5234626 -237429727 - L2 LINE L2 0 3313 3180 555 271 90 6 chr1 5235052 5235229 -237429124 - MIR SINE MIR -11 251 60 472 269 66 28 chr1 5236733 5236915 -237427438 + MIR SINE MIR 47 235 -27 288 314 74 16 chr1 5237658 5237779 -237426574 + L2 LINE L2 3145 3272 0 2342 106 0 0 chr1 5239834 5240146 -237424207 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 5240157 5240180 -237424173 + AT_rich Low_complexity Low_complexity 1 23 0 396 223 86 22 chr1 5241255 5241394 -237422959 + MLT1C LTR MaLR 7 154 -313 1200 211 60 3 chr1 5241403 5241701 -237422652 + MLT1B LTR MaLR 5 319 -71 687 241 162 98 chr1 5243064 5243607 -237420746 - MLT1E LTR MaLR -5 588 11 260 225 75 83 chr1 5244465 5244585 -237419768 - MER5A DNA MER1_type -27 162 44 * 296 258 65 21 chr1 5244495 5244588 -237419765 + MER5A DNA MER1_type 64 160 -29 1805 192 41 0 chr1 5245212 5245586 -237418767 + MLT1B LTR MaLR 1 467 0 185 297 187 65 chr1 5247290 5248107 -237416246 + L2 LINE L2 1575 2491 -823 623 255 176 5 chr1 5248398 5248699 -237415654 + MLT1C LTR MaLR 129 495 -10 558 314 73 55 chr1 5248969 5249475 -237414878 + MER20B DNA MER1_type 262 776 -7 210 193 53 18 chr1 5249958 5250015 -237414338 + MIR SINE MIR 20 78 -130 191 406 41 16 chr1 5250585 5250708 -237413645 - MIR SINE MIR -59 203 78 232 326 33 22 chr1 5251505 5251597 -237412756 - MIR3 SINE MIR -21 187 95 2269 105 7 0 chr1 5252434 5252738 -237411615 + AluSc SINE Alu 1 306 -3 509 185 8 0 chr1 5254413 5254532 -237409821 + (CAT)n Simple_repeat Simple_repeat 1 120 0 897 168 0 0 chr1 5254544 5254723 -237409630 + (CAT)n Simple_repeat Simple_repeat 1 179 0 495 325 123 5 chr1 5254736 5254939 -237409414 - MIR SINE MIR 0 262 36 363 366 45 18 chr1 5255413 5255515 -237408838 - MIR SINE MIR 0 262 164 2071 118 10 3 chr1 5255515 5255811 -237408542 - AluSp SINE Alu -15 298 1 363 366 45 18 chr1 5255811 5255932 -237408421 - MIR SINE MIR -98 164 33 265 395 8 8 chr1 5256194 5256318 -237408035 - L3b LINE CR1 -132 1451 1328 206 331 48 28 chr1 5257939 5258084 -237406269 - L3b LINE CR1 -192 1391 1244 216 111 0 0 chr1 5258659 5258695 -237405658 + (TGG)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr1 5259157 5259186 -237405167 + GC_rich Low_complexity Low_complexity 1 29 0 361 308 0 7 chr1 5260678 5260821 -237403532 + (TG)n Simple_repeat Simple_repeat 1 142 0 320 262 6 16 chr1 5260856 5261177 -237403176 + (TG)n Simple_repeat Simple_repeat 1 318 0 343 314 6 6 chr1 5261772 5261944 -237402409 + (CACAC)n Simple_repeat Simple_repeat 5 176 0 2348 83 0 0 chr1 5262949 5263251 -237401102 + AluSc SINE Alu 1 302 -7 1881 271 78 13 chr1 5263259 5263937 -237400416 + L1MB7 LINE L1 5445 6166 -18 1470 279 74 19 chr1 5265154 5265774 -237398579 - L1MC3 LINE L1 -3 7782 7129 306 0 0 0 chr1 5265785 5265819 -237398534 + (A)n Simple_repeat Simple_repeat 1 34 0 1539 15 0 0 chr1 5265838 5266039 -237398314 - L1PA3 LINE L1 -1016 5130 4930 7706 30 1 0 chr1 5266039 5267057 -237397296 + L1PA3 LINE L1 5136 6154 -1 718 174 71 0 chr1 5269490 5269645 -237394708 + MER20 DNA MER1_type 6 171 -48 227 373 25 25 chr1 5269795 5269913 -237394440 + MIR SINE MIR 21 138 -70 342 269 76 70 chr1 5270740 5270911 -237393442 + MER5B DNA MER1_type 2 173 -5 356 356 34 7 chr1 5271276 5271425 -237392928 - MIR SINE MIR 0 262 110 195 286 50 67 chr1 5272556 5272675 -237391678 + L3 LINE CR1 1456 1572 -5 255 385 15 0 chr1 5273486 5273621 -237390732 - MIR SINE MIR -90 172 36 357 304 62 46 chr1 5273751 5273945 -237390408 - L3 LINE CR1 -107 1470 1274 281 294 22 22 chr1 5273947 5274083 -237390270 + (CA)n Simple_repeat Simple_repeat 1 136 0 258 268 12 6 chr1 5274123 5274291 -237390062 + (CA)n Simple_repeat Simple_repeat 2 170 0 296 322 6 40 chr1 5274293 5274470 -237389883 + (CATA)n Simple_repeat Simple_repeat 4 174 0 * 402 321 18 6 chr1 5274376 5274541 -237389812 + (CA)n Simple_repeat Simple_repeat 2 168 0 1546 174 87 3 chr1 5275328 5275673 -237388680 + MLT1B LTR MaLR 1 374 -16 474 189 41 0 chr1 5276069 5276191 -237388162 - MER20 DNA MER1_type -88 131 5 285 312 24 16 chr1 5276671 5276796 -237387557 + L2 LINE L2 3147 3272 0 1211 241 90 6 chr1 5277240 5277605 -237386748 + MSTD LTR MaLR 1 396 0 312 326 137 0 chr1 5278409 5278584 -237385769 - L2 LINE L2 -107 3165 2967 207 205 0 0 chr1 5279015 5279054 -237385299 + MIR SINE MIR 111 149 -113 293 303 151 7 chr1 5280481 5280633 -237383720 + MIR SINE MIR 81 254 -8 232 279 139 0 chr1 5282283 5282362 -237381991 + MIR SINE MIR 111 200 -62 2385 88 3 0 chr1 5282417 5282724 -237381629 - AluSx SINE Alu -4 308 1 273 119 0 0 chr1 5283381 5283423 -237380930 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 191 310 127 28 chr1 5284687 5284835 -237379518 - MIR SINE MIR -64 144 33 487 221 26 19 chr1 5284864 5285004 -237379349 + MLT1C LTR MaLR 358 467 0 197 309 161 0 chr1 5286446 5286527 -237377826 + MIR SINE MIR 50 143 -119 215 243 0 43 chr1 5287172 5287242 -237377111 + CT-rich Low_complexity Low_complexity 1 67 0 621 231 34 8 chr1 5287731 5287915 -237376438 + MER5A DNA MER1_type 1 171 -7 533 333 53 0 chr1 5287938 5288127 -237376226 - MIR SINE MIR -28 234 36 750 198 0 0 chr1 5288283 5288460 -237375893 + (CAT)n Simple_repeat Simple_repeat 3 179 0 294 194 0 0 chr1 5288480 5288547 -237375806 + (CAT)n Simple_repeat Simple_repeat 2 68 0 505 246 127 0 chr1 5289130 5289272 -237375081 + MIR SINE MIR 28 187 -75 290 277 125 23 chr1 5289329 5289458 -237374895 - MIR SINE MIR -56 152 17 1741 186 76 14 chr1 5290749 5290886 -237373467 + MLT1C LTR MaLR 6 133 -334 2054 215 50 45 chr1 5290886 5291362 -237372991 + MLT2B1 LTR ERVL 1 482 -38 396 0 0 0 chr1 5291362 5291406 -237372947 + (CA)n Simple_repeat Simple_repeat 2 45 0 2054 215 50 45 chr1 5291406 5291446 -237372907 + MLT2B1 LTR ERVL 482 520 0 1741 186 76 14 chr1 5291446 5291743 -237372610 + MLT1C LTR MaLR 133 467 0 189 0 0 0 chr1 5291812 5291833 -237372520 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 462 340 82 22 chr1 5291837 5292069 -237372284 - L2 LINE L2 -14 3299 3054 422 267 80 40 chr1 5292212 5292388 -237371965 + MIR SINE MIR 80 262 0 761 219 78 10 chr1 5292419 5292624 -237371729 + MLT1E LTR MaLR 2 220 -373 946 200 73 5 chr1 5292664 5292884 -237371469 + MLT1E LTR MaLR 305 539 -54 2268 90 0 3 chr1 5294041 5294340 -237370013 - AluSx SINE Alu -14 298 1 1645 268 47 21 chr1 5295482 5296016 -237368337 + MER77 LTR ERV1 54 601 -4 530 216 196 0 chr1 5296693 5296846 -237367507 - MER58A DNA MER1_type 0 224 42 245 95 0 24 chr1 5296896 5296938 -237367415 - MER58A DNA MER1_type -25 82 42 216 0 0 0 chr1 5297140 5297164 -237367189 + (T)n Simple_repeat Simple_repeat 1 24 0 366 215 103 0 chr1 5297177 5297284 -237367069 - MER53 DNA DNA -71 118 1 239 321 0 12 chr1 5297780 5297864 -237366489 + GA-rich Low_complexity Low_complexity 2 84 0 1007 220 31 101 chr1 5297923 5298445 -237365908 - MLT1E2 LTR MaLR 0 626 61 2175 116 0 0 chr1 5299819 5300120 -237364233 - AluSx SINE Alu -11 301 1 340 250 103 17 chr1 5301142 5301258 -237363095 - MIR SINE MIR -115 147 22 2377 206 34 9 chr1 5301272 5301545 -237362808 + L1MB5 LINE L1 5637 5902 -272 2166 107 55 30 chr1 5301545 5301908 -237362445 + THE1C LTR MaLR 1 372 -3 2377 206 34 9 chr1 5301908 5302158 -237362195 + L1MB5 LINE L1 5902 6173 -1 403 270 56 27 chr1 5302586 5302744 -237361609 + MIR SINE MIR 51 212 -35 372 88 0 0 chr1 5302827 5302884 -237361469 + (CA)n Simple_repeat Simple_repeat 2 58 0 1999 134 3 0 chr1 5302982 5303274 -237361079 - AluSx SINE Alu -19 293 1 2201 134 24 0 chr1 5303477 5303805 -237360548 + MER1B DNA MER1_type 2 337 0 183 358 154 0 chr1 5305350 5305473 -237358880 + L2 LINE L2 3167 3308 -5 695 254 100 12 chr1 5306979 5307219 -237357134 + MIR SINE MIR 1 261 -1 793 194 0 0 chr1 5307928 5308062 -237356291 + AluJo SINE Alu 1 134 -178 1034 311 50 10 chr1 5308624 5309122 -237355231 + L1MB7 LINE L1 5651 6168 -16 273 29 0 0 chr1 5309126 5309160 -237355193 + (CA)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr1 5309292 5309316 -237355037 + AT_rich Low_complexity Low_complexity 1 24 0 734 257 39 6 chr1 5309646 5309825 -237354528 + MIR SINE MIR 8 192 -70 1371 176 30 62 chr1 5310646 5310965 -237353388 - L1MD1 LINE L1 0 6242 5935 2541 168 8 70 chr1 5310965 5311483 -237352870 - MER66B LTR ERV1 0 486 1 1371 176 30 62 chr1 5311483 5311533 -237352820 - L1MD1 LINE L1 -307 5935 5885 198 0 0 0 chr1 5313473 5313495 -237350858 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr1 5315061 5315083 -237349270 + GC_rich Low_complexity Low_complexity 1 22 0 49 66 0 0 chr1 5315349 5315440 -237348913 + GC_rich Low_complexity Low_complexity 1 91 0 28 29 0 0 chr1 5315888 5315923 -237348430 + GC_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr1 5315936 5315980 -237348373 + GC_rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr1 5316027 5316068 -237348285 + GC_rich Low_complexity Low_complexity 1 41 0 31 88 0 0 chr1 5316437 5316517 -237347836 + GC_rich Low_complexity Low_complexity 1 80 0 245 241 25 51 chr1 5316528 5316686 -237347667 + C-rich Low_complexity Low_complexity 3 156 0 259 308 28 9 chr1 5318063 5318170 -237346183 + MIR SINE MIR 36 144 -118 1165 253 82 5 chr1 5318583 5319010 -237345343 - Charlie4a DNA MER1_type -24 484 25 1973 122 0 14 chr1 5319287 5319610 -237344743 - AluSx SINE Alu 0 319 1 225 196 0 0 chr1 5319801 5319847 -237344506 + (CA)n Simple_repeat Simple_repeat 2 47 0 1008 268 36 13 chr1 5322516 5322818 -237341535 - MLT1I LTR MaLR -3 406 98 1328 156 0 0 chr1 5323243 5323467 -237340886 + L1MA4 LINE L1 6072 6295 -5 972 182 0 3 chr1 5323504 5324216 -237340137 + (CCA)n Simple_repeat Simple_repeat 1 709 0 220 329 0 0 chr1 5324607 5324677 -237339676 - MIR SINE MIR -52 210 141 823 279 25 102 chr1 5325254 5325773 -237338580 + MLT1J LTR MaLR 25 503 -8 2066 110 7 0 chr1 5325897 5326189 -237338164 + AluSx SINE Alu 1 294 -18 215 102 0 41 chr1 5327047 5327096 -237337257 + (TTTTTG)n Simple_repeat Simple_repeat 1 47 0 310 337 11 0 chr1 5327114 5327209 -237337144 + MIR SINE MIR 54 149 -59 1459 218 40 37 chr1 5328449 5328829 -237335524 - MLT1B LTR MaLR -9 381 1 693 227 71 15 chr1 5328925 5329123 -237335230 + L1MB7 LINE L1 5654 5862 -322 274 211 0 0 chr1 5329123 5329180 -237335173 + Charlie1 DNA MER1_type 2407 2463 -298 1015 206 45 96 chr1 5329243 5329597 -237334756 + L1MB7 LINE L1 5847 6182 -2 1159 208 16 43 chr1 5329598 5329920 -237334433 + Charlie1 DNA MER1_type 2146 2458 -303 22 0 0 0 chr1 5329980 5330002 -237334351 + AT_rich Low_complexity Low_complexity 1 22 0 224 59 29 0 chr1 5330132 5330166 -237334187 + (ATG)n Simple_repeat Simple_repeat 1 35 0 184 340 0 0 chr1 5330229 5330279 -237334074 - MIR SINE MIR -72 190 141 198 71 0 0 chr1 5330515 5330543 -237333810 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 429 260 57 0 chr1 5330599 5330776 -237333577 + L1M4 LINE L1 5086 5272 -874 191 180 60 0 chr1 5330776 5330826 -237333527 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 319 302 0 8 chr1 5330847 5330976 -237333377 + L1M LINE L1 5288 5415 -747 1778 163 13 0 chr1 5331233 5331580 -237332773 + AluJb SINE Alu 1 342 -615 1820 125 29 11 chr1 5331580 5331710 -237332643 + AluSx SINE Alu 6 132 -180 2007 92 32 35 chr1 5331710 5332024 -237332329 + AluSq SINE Alu 1 313 0 1820 125 29 11 chr1 5332024 5332172 -237332181 + AluSx SINE Alu 132 289 -23 1778 163 13 0 chr1 5332172 5332186 -237332167 + AluJb SINE Alu 342 957 0 189 0 0 0 chr1 5333814 5333835 -237330518 + (A)n Simple_repeat Simple_repeat 1 21 0 733 302 41 16 chr1 5334053 5334295 -237330058 + MIR SINE MIR 2 249 -13 261 242 0 16 chr1 5334717 5334779 -237329574 + CT-rich Low_complexity Low_complexity 1 61 0 223 291 0 0 chr1 5335054 5335109 -237329244 + (TGGG)n Simple_repeat Simple_repeat 1 55 0 1956 127 38 0 chr1 5335348 5335639 -237328714 + AluSx SINE Alu 8 309 -3 1617 213 116 16 chr1 5337112 5337553 -237326800 + MER31A LTR ERV1 1 485 0 328 145 51 96 chr1 5337892 5338265 -237326088 + (CTGTG)n Simple_repeat Simple_repeat 1 356 0 407 5 0 135 chr1 5338289 5338474 -237325879 + (TG)n Simple_repeat Simple_repeat 1 160 0 343 136 60 87 chr1 5338533 5338717 -237325636 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 184 354 41 34 chr1 5338744 5338891 -237325462 - L2 LINE L2 -25 3247 3100 1659 201 93 50 chr1 5338929 5339412 -237324941 + MLT1D LTR MaLR 1 504 -1 777 291 57 10 chr1 5340037 5340333 -237324020 + MER77 LTR ERV1 292 601 -4 225 0 0 0 chr1 5341595 5341620 -237322733 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 903 224 126 32 chr1 5341775 5342261 -237322092 - MLT1E1 LTR MaLR -6 648 1 202 218 55 0 chr1 5342931 5342986 -237321367 - MIR SINE MIR -63 145 88 279 180 0 16 chr1 5342991 5343052 -237321301 - MER53 DNA DNA -2 187 128 265 218 81 11 chr1 5343302 5343389 -237320964 + MER53 DNA DNA 94 186 -3 * 266 219 98 12 chr1 5343319 5343401 -237320952 - MER53 DNA DNA -100 89 1 356 287 43 24 chr1 5344685 5344849 -237319504 + MER63A DNA MER1_type 42 208 -2 209 300 134 69 chr1 5345146 5345423 -237318930 + L2 LINE L2 2978 3272 0 316 319 9 26 chr1 5346236 5346352 -237318001 + MIR SINE MIR 13 126 -136 1906 181 101 15 chr1 5346535 5346933 -237317420 + MER70A LTR ERVL 41 472 0 540 302 123 19 chr1 5347072 5347380 -237316973 + MLT1J2 LTR MaLR 71 410 -40 1847 129 0 7 chr1 5349563 5349842 -237314511 + AluSx SINE Alu 21 297 -15 2385 75 0 3 chr1 5349919 5350224 -237314129 + AluSq SINE Alu 1 304 -9 1925 138 0 0 chr1 5350506 5350834 -237313519 - AluSq SINE Alu 0 328 1 1692 213 75 59 chr1 5351020 5351062 -237313291 - MER114 LTR ERV -13 635 595 1623 184 37 0 chr1 5351062 5351356 -237312997 - AluJb SINE Alu -7 305 1 1692 213 75 59 chr1 5351356 5351937 -237312416 - MER114 LTR ERV -53 595 2 309 274 55 48 chr1 5352089 5352235 -237312118 - L1MCa LINE L1 -4347 2079 1933 2154 108 0 3 chr1 5352263 5352568 -237311785 + AluSq SINE Alu 1 304 -9 354 226 18 113 chr1 5352606 5352774 -237311579 + L1MCa LINE L1 1927 2078 -4348 744 50 0 0 chr1 5352829 5352929 -237311424 + L1PA5 LINE L1 5943 6042 -112 196 51 26 26 chr1 5352936 5352975 -237311378 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 713 259 80 5 chr1 5353105 5353317 -237311036 - L1ME2 LINE L1 0 6164 5937 192 217 17 40 chr1 5354403 5354488 -237309865 + MIR SINE MIR 34 113 -122 263 279 0 0 chr1 5358970 5359038 -237305315 + G-rich Low_complexity Low_complexity 1 68 0 1089 261 37 35 chr1 5360092 5360126 -237304227 + MLT1C LTR MaLR 89 121 -346 1498 179 17 21 chr1 5360126 5360417 -237303936 + AluJo SINE Alu 1 290 -22 1089 261 37 35 chr1 5360417 5360757 -237303596 + MLT1C LTR MaLR 121 464 -3 241 336 0 44 chr1 5360794 5360907 -237303446 + MLT1K LTR MaLR 481 588 0 327 317 122 10 chr1 5361479 5361684 -237302669 - MIR SINE MIR -15 247 20 188 303 84 58 chr1 5361684 5361839 -237302514 - MIR3 SINE MIR -46 162 4 1262 237 121 71 chr1 5362821 5363302 -237301051 + MLT1D LTR MaLR 1 505 0 1921 128 0 21 chr1 5363893 5364218 -237300135 + AluSq SINE Alu 1 319 0 1481 214 54 0 chr1 5364370 5364702 -237299651 + MLT1B LTR MaLR 37 386 -4 1246 313 115 34 chr1 5364839 5365734 -237298619 - L2 LINE L2 -493 2821 1854 4057 163 85 11 chr1 5367089 5367827 -237296526 + MER54B LTR ERVL 1 793 0 220 239 171 11 chr1 5370300 5370388 -237293965 + MIR SINE MIR 31 132 -130 2534 45 0 3 chr1 5371787 5372095 -237292258 - AluY SINE Alu -4 307 1 35 24 0 0 chr1 5372956 5372998 -237291355 + AT_rich Low_complexity Low_complexity 1 42 0 5560 66 8 3 chr1 5373037 5373754 -237290599 - L1PA8 LINE L1 -8 6164 5444 285 246 118 9 chr1 5375579 5375689 -237288664 + L2 LINE L2 3188 3309 -4 211 310 0 0 chr1 5376061 5376119 -237288234 - L2 LINE L2 -17 3296 3239 30 0 0 0 chr1 5376301 5376331 -237288022 + AT_rich Low_complexity Low_complexity 1 30 0 585 203 117 37 chr1 5377312 5377475 -237286878 + MLT1D LTR MaLR 1 176 -329 384 271 102 83 chr1 5378164 5378537 -237285816 - L2 LINE L2 -1 3312 2933 4429 55 62 5 chr1 5379346 5379923 -237284430 + LTR66 LTR ERVL 1 610 0 8302 98 16 11 chr1 5379923 5380807 -237283546 + HERVL66 LTR ERVL 1 894 -3435 2435 58 6 10 chr1 5380807 5381119 -237283234 + AluY SINE Alu 1 311 0 8302 98 16 11 chr1 5381119 5381358 -237282995 + HERVL66 LTR ERVL 894 1130 -3199 2852 75 6 0 chr1 5381358 5381718 -237282635 + HERVL66 LTR ERVL 1436 1797 -2532 * 4876 123 6 20 chr1 5381698 5382412 -237281941 + HERVL66 LTR ERVL 2654 3357 -972 4004 97 7 3 chr1 5382399 5383073 -237281280 + HERVL66 LTR ERVL 3569 4329 0 * 4206 78 40 52 chr1 5383073 5383690 -237280663 + LTR66 LTR ERVL 1 610 0 204 311 62 62 chr1 5386572 5386733 -237277620 - L3 LINE CR1 -7 1570 1410 207 0 0 0 chr1 5386821 5386844 -237277509 + (GA)n Simple_repeat Simple_repeat 1 23 0 1429 173 46 140 chr1 5386975 5387385 -237276968 + MLT2D LTR ERVL 1 365 -49 306 0 0 0 chr1 5387385 5387419 -237276934 + (TA)n Simple_repeat Simple_repeat 2 35 0 1429 173 46 140 chr1 5387419 5387464 -237276889 + MLT2D LTR ERVL 365 413 -1 186 309 154 40 chr1 5387673 5387822 -237276531 + L2 LINE L2 2558 2723 -591 279 0 0 0 chr1 5388184 5388215 -237276138 + (GA)n Simple_repeat Simple_repeat 1 31 0 26 64 0 0 chr1 5388526 5388573 -237275780 + AT_rich Low_complexity Low_complexity 1 47 0 419 276 147 73 chr1 5388618 5388973 -237275380 + LTR67 LTR ERVL 2 382 -175 257 277 53 11 chr1 5389681 5389775 -237274578 + HERVL LTR ERVL 1199 1296 -4358 2163 114 7 0 chr1 5389836 5390142 -237274211 + AluSc SINE Alu 1 308 -1 20469 111 11 14 chr1 5390449 5394411 -237269942 + L1PA8A LINE L1 2183 6131 0 2445 66 0 0 chr1 5395002 5395306 -237269047 + AluY SINE Alu 1 304 -7 641 323 32 18 chr1 5395682 5395967 -237268386 + L2 LINE L2 1852 2140 -1174 388 234 19 0 chr1 5396031 5396138 -237268215 + L2 LINE L2 2005 2113 -1201 440 292 87 0 chr1 5396221 5396382 -237267971 + L2 LINE L2 2106 2280 -1034 904 244 116 0 chr1 5396408 5396683 -237267670 + L2 LINE L2 2235 2541 -773 2050 116 24 0 chr1 5396960 5397254 -237267099 + AluSq SINE Alu 1 301 -12 326 220 207 21 chr1 5397826 5398029 -237266324 + L1MCc LINE L1 1341 1740 -4887 * 1227 243 97 26 chr1 5398009 5398795 -237265558 + L1ME3A LINE L1 5260 6141 -29 662 308 182 12 chr1 5398856 5399496 -237264857 + L2 LINE L2 2556 3309 -4 544 158 30 139 chr1 5399497 5399662 -237264691 - MER103 DNA DNA -12 154 8 215 320 104 50 chr1 5399738 5399960 -237264393 - MIR SINE MIR -16 246 13 845 222 23 54 chr1 5400754 5400975 -237263378 - MER20 DNA MER1_type 0 219 6 191 36 36 0 chr1 5401780 5401808 -237262545 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 771 263 117 4 chr1 5403101 5403375 -237260978 - MER110 LTR ERV1 -14 477 173 2138 159 30 30 chr1 5403389 5403753 -237260600 - THE1B LTR MaLR 0 364 1 274 133 33 67 chr1 5403867 5403927 -237260426 - MER110A LTR ERV1 -330 138 81 878 215 0 6 chr1 5403999 5404157 -237260196 - MIR SINE MIR -85 177 21 193 219 0 0 chr1 5404843 5404884 -237259469 - L2 LINE L2 -556 2758 2718 1793 156 85 16 chr1 5405498 5405863 -237258490 + MLT1B LTR MaLR 1 390 0 2290 78 7 7 chr1 5406504 5406810 -237257543 - AluSq SINE Alu -7 306 1 1927 116 3 10 chr1 5407655 5407947 -237256406 + AluJo SINE Alu 1 290 -22 1788 127 25 38 chr1 5407949 5408265 -237256088 + AluSx SINE Alu 1 312 0 214 209 23 0 chr1 5408470 5408513 -237255840 - L2 LINE L2 -19 3253 3210 759 278 77 78 chr1 5408589 5408828 -237255525 + MLT1G LTR MaLR 15 253 -337 2013 130 3 0 chr1 5408828 5409127 -237255226 + AluSx SINE Alu 10 309 -3 759 278 77 78 chr1 5409127 5409462 -237254891 + MLT1G LTR MaLR 253 588 -2 246 276 0 0 chr1 5410566 5410624 -237253729 + (ATG)n Simple_repeat Simple_repeat 2 59 0 259 290 167 58 chr1 5411861 5412209 -237252144 + L2 LINE L2 2887 3272 0 241 259 37 25 chr1 5412868 5412949 -237251404 + MIR3 SINE MIR 104 185 -23 5405 123 49 8 chr1 5413473 5414332 -237250021 + L1PA16 LINE L1 5273 6166 0 1557 211 65 51 chr1 5414478 5414990 -237249363 - Charlie1b DNA MER1_type -2 521 3 498 221 47 47 chr1 5415049 5415198 -237249155 + MIR SINE MIR 45 193 -69 2493 42 0 6 chr1 5415563 5415876 -237248477 - AluY SINE Alu 0 311 1 192 263 42 76 chr1 5417980 5418098 -237246255 - L2 LINE L2 -219 3053 2940 360 267 34 27 chr1 5418278 5418424 -237245929 - L2 LINE L2 -963 2351 2205 242 272 49 12 chr1 5418636 5418717 -237245636 + L2 LINE L2 3173 3256 -16 2782 82 3 0 chr1 5418764 5419118 -237245235 + THE1A LTR MaLR 1 355 0 180 135 0 0 chr1 5424305 5424342 -237240011 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 269 244 13 13 chr1 5426126 5426204 -237238149 - MLT1K LTR MaLR -27 561 484 210 136 0 0 chr1 5426270 5426314 -237238039 + (TC)n Simple_repeat Simple_repeat 2 45 0 308 299 134 66 chr1 5426326 5426750 -237237603 - L1M4c LINE L1 -5081 1303 851 230 51 51 0 chr1 5426791 5426830 -237237523 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 311 355 24 30 chr1 5427094 5427260 -237237093 - L2 LINE L2 -742 2572 2408 774 123 26 4 chr1 5427349 5427578 -237236775 + (TAGA)n Simple_repeat Simple_repeat 1 234 0 769 98 15 23 chr1 5427708 5427840 -237236513 - MLT1B LTR MaLR -9 381 251 3085 157 51 4 chr1 5428415 5428963 -237235390 + MER7C DNA MER2_type 14 587 -15 336 281 119 19 chr1 5429041 5429201 -237235152 - L1M4 LINE L1 -1034 5112 4937 268 336 51 4 chr1 5429273 5429508 -237234845 - L1M4 LINE L1 -1333 4813 4568 1964 170 0 0 chr1 5429592 5429880 -237234473 - AluJb SINE Alu -20 292 5 241 252 32 89 chr1 5429957 5430080 -237234273 - L1ME3 LINE L1 -78 6084 5969 2051 134 0 7 chr1 5430169 5430468 -237233885 - AluSx SINE Alu -15 297 1 534 309 68 40 chr1 5430549 5430946 -237233407 - L1ME3 LINE L1 -289 5881 5462 1748 190 19 13 chr1 5431060 5431098 -237233255 - L1MB7 LINE L1 -25 6159 6123 2190 122 0 0 chr1 5431098 5431386 -237232967 + AluSx SINE Alu 1 288 -24 243 0 0 0 chr1 5431387 5431414 -237232939 + (CTAAA)n Simple_repeat Simple_repeat 4 30 0 1748 190 19 13 chr1 5431414 5431747 -237232606 - L1MB7 LINE L1 -60 6124 5784 4065 212 87 16 chr1 5431756 5432454 -237231899 - L1ME3 LINE L1 -751 5395 4579 288 0 0 0 chr1 5432454 5432486 -237231867 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 4065 212 87 16 chr1 5432486 5432965 -237231388 - L1ME3 LINE L1 -1567 4579 4135 269 303 62 78 chr1 5432955 5433427 -237230926 - L1M4 LINE L1 -924 5222 4763 * 2024 142 0 37 chr1 5433427 5433751 -237230602 - AluSx SINE Alu 0 312 1 269 303 62 78 chr1 5433751 5433968 -237230385 - L1M4 LINE L1 -1383 4763 4544 2254 128 0 6 chr1 5434175 5434488 -237229865 - AluSq SINE Alu -2 311 1 578 323 54 17 chr1 5434611 5435034 -237229319 - L1MC5 LINE L1 -960 6852 6415 302 184 66 0 chr1 5435268 5435344 -237229009 - L1 LINE L1 -1142 5004 4924 28 29 0 0 chr1 5435365 5435400 -237228953 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr1 5435534 5435565 -237228788 + AT_rich Low_complexity Low_complexity 1 31 0 2538 213 20 19 chr1 5435565 5436037 -237228316 - L1MD3 LINE L1 0 7995 7520 2722 107 0 6 chr1 5436037 5436403 -237227950 - THE1B LTR MaLR 0 364 1 2538 213 20 19 chr1 5436403 5436521 -237227832 - L1MD3 LINE L1 -475 7520 7404 338 308 0 0 chr1 5436521 5436612 -237227741 - MLT1F1 LTR MaLR -442 125 35 798 128 138 26 chr1 5436615 5436668 -237227685 - L1MD3 LINE L1 -882 7113 7067 192 40 0 0 chr1 5436668 5436693 -237227660 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 798 128 138 26 chr1 5436693 5436834 -237227519 - L1MD3 LINE L1 -928 7067 6897 965 283 114 0 chr1 5436932 5437345 -237227008 - L1MC5 LINE L1 -1919 5889 5430 448 315 28 17 chr1 5437664 5437845 -237226508 - MIR SINE MIR -48 214 32 1603 167 4 4 chr1 5437939 5438184 -237226169 - AluJb SINE Alu -66 246 2 335 352 29 0 chr1 5439112 5439217 -237225136 - MIR SINE MIR -83 179 72 1982 192 5 13 chr1 5439483 5439502 -237224851 - MLT2D LTR ERVL -22 392 374 411 21 0 0 chr1 5439502 5439550 -237224803 + (TG)n Simple_repeat Simple_repeat 1 48 0 1982 192 5 13 chr1 5439550 5439925 -237224428 - MLT2D LTR ERVL -40 374 1 2003 124 6 47 chr1 5440349 5440671 -237223682 - AluSx SINE Alu -3 309 1 2385 89 0 19 chr1 5441916 5442232 -237222121 - AluSg SINE Alu 0 310 1 1073 267 50 11 chr1 5443823 5444182 -237220171 - L1MC4a LINE L1 -1884 5924 5552 2855 233 35 9 chr1 5444722 5445358 -237218995 - MER82 DNA MER2_type 0 653 2 330 353 49 0 chr1 5445709 5445831 -237218522 - L2 LINE L2 -5 3267 3140 693 269 66 0 chr1 5445888 5446085 -237218268 - MER58A DNA MER1_type -14 210 1 283 375 0 0 chr1 5446137 5446233 -237218120 - L2 LINE L2 -224 3048 2953 327 104 0 0 chr1 5446489 5446537 -237217816 + (CAT)n Simple_repeat Simple_repeat 3 50 0 843 225 28 0 chr1 5447056 5447234 -237217119 + MER5A DNA MER1_type 3 185 -4 192 97 0 0 chr1 5448245 5448276 -237216077 + (TC)n Simple_repeat Simple_repeat 1 31 0 333 0 0 0 chr1 5448292 5448329 -237216024 + (GA)n Simple_repeat Simple_repeat 2 38 0 1046 22 22 43 chr1 5448343 5448527 -237215826 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1619 191 70 0 chr1 5448564 5448893 -237215460 - MLT2D LTR ERVL -55 359 8 312 231 32 142 chr1 5448892 5449246 -237215107 + MLT1K LTR MaLR 7 248 -340 * 370 277 54 0 chr1 5449388 5449500 -237214853 + L2 LINE L2 3196 3313 0 1093 226 50 61 chr1 5451832 5452293 -237212060 - MLT1C LTR MaLR -10 457 2 1301 289 12 0 chr1 5454869 5455205 -237209148 + MER58B DNA MER1_type 1 340 -1 594 221 194 46 chr1 5455296 5455621 -237208732 - MLT1C LTR MaLR -61 406 34 297 250 6 11 chr1 5458715 5458895 -237205458 + CT-rich Low_complexity Low_complexity 2 180 0 778 267 5 5 chr1 5459329 5459539 -237204814 - MER58 DNA MER1_type -2184 236 27 477 170 21 17 chr1 5460316 5460493 -237203860 + MER20 DNA MER1_type 3 213 -6 279 0 0 0 chr1 5462122 5462153 -237202200 + (CA)n Simple_repeat Simple_repeat 2 32 0 820 157 7 41 chr1 5462198 5462325 -237202028 + AluJb SINE Alu 159 289 -23 485 31 0 16 chr1 5462325 5462389 -237201964 + (GAAAA)n Simple_repeat Simple_repeat 5 67 0 258 32 0 0 chr1 5462389 5462420 -237201933 + (GGGGA)n Simple_repeat Simple_repeat 1 31 0 820 157 7 41 chr1 5462420 5462438 -237201915 + AluJb SINE Alu 287 300 -12 339 25 0 0 chr1 5462642 5462682 -237201671 + (T)n Simple_repeat Simple_repeat 1 40 0 3520 37 105 0 chr1 5462692 5463151 -237201202 - L1PA4 LINE L1 -4 6151 5645 765 191 75 5 chr1 5464167 5464355 -237199998 - L1MB1 LINE L1 -254 5914 5714 651 150 31 10 chr1 5464354 5464547 -237199806 + L1MB1 LINE L1 5923 6168 0 * 265 164 45 60 chr1 5465630 5465697 -237198656 + MER45 DNA AcHobo 24 89 -89 1190 207 171 7 chr1 5465733 5466042 -237198311 - MLT1A1 LTR MaLR 0 365 6 674 241 119 53 chr1 5466593 5466912 -237197441 - L1MC4 LINE L1 -369 7673 7334 1639 174 18 12 chr1 5467049 5467377 -237196976 - MLT1B LTR MaLR -55 335 6 613 284 77 37 chr1 5467388 5467688 -237196665 - L1MC4 LINE L1 -797 7245 6919 2187 127 16 3 chr1 5467688 5467996 -237196357 - AluSx SINE Alu 0 312 1 613 284 77 37 chr1 5467996 5468152 -237196201 - L1MC4 LINE L1 -1123 6919 6771 1584 194 35 58 chr1 5469430 5469807 -237194546 + MLT1A2 LTR MaLR 3 370 -4 200 316 26 0 chr1 5470680 5470756 -237193597 - L2 LINE L2 -945 2369 2292 2973 13 0 0 chr1 5470915 5471231 -237193122 + AluYb8 SINE Alu 1 316 -2 273 319 132 24 chr1 5471416 5471667 -237192686 - L2 LINE L2 -15 3298 3021 1932 115 0 22 chr1 5471982 5472252 -237192101 + AluSx SINE Alu 35 298 -14 1187 265 61 82 chr1 5472784 5472911 -237191442 + MER21B LTR ERV1 60 188 -675 2230 106 3 3 chr1 5472911 5473204 -237191149 - AluSx SINE Alu -19 293 1 1187 265 61 82 chr1 5473204 5473745 -237190608 + MER21B LTR ERV1 188 714 -149 234 0 0 0 chr1 5474309 5474335 -237190018 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 258 32 0 0 chr1 5474334 5474365 -237189988 + (GA)n Simple_repeat Simple_repeat 1 31 0 180 238 0 0 chr1 5474418 5474481 -237189872 + (TG)n Simple_repeat Simple_repeat 1 63 0 182 290 7 0 chr1 5474519 5474657 -237189696 + (TG)n Simple_repeat Simple_repeat 1 139 0 288 258 0 0 chr1 5474723 5474847 -237189506 + (TG)n Simple_repeat Simple_repeat 2 125 0 240 307 0 0 chr1 5474929 5475108 -237189245 + (TG)n Simple_repeat Simple_repeat 2 180 0 243 276 143 0 chr1 5477130 5477228 -237187125 - L2 LINE L2 0 3313 3202 291 316 20 26 chr1 5477528 5477680 -237186673 - L2 LINE L2 -264 3049 2899 388 246 107 0 chr1 5477690 5477809 -237186544 + MLT1D LTR MaLR 7 138 -329 2035 172 36 27 chr1 5477809 5478357 -237185996 - MLT2A2 LTR ERVL 0 554 1 722 227 145 0 chr1 5478470 5478642 -237185711 + MLT1D LTR MaLR 309 505 0 2608 201 77 4 chr1 5478949 5479511 -237184842 - MER77 LTR ERV1 -2 603 1 718 317 189 18 chr1 5479523 5480283 -237184070 - L2 LINE L2 -815 2499 1610 702 210 11 11 chr1 5480326 5480502 -237183851 + MER53 DNA DNA 1 176 -13 596 215 94 54 chr1 5480572 5480795 -237183558 - L2 LINE L2 0 3313 3082 1622 42 12 6 chr1 5480814 5481093 -237183260 + L1P2 LINE L1 5159 5438 -716 568 79 22 0 chr1 5481091 5481180 -237183173 - L1P2 LINE L1 -635 5519 5429 * 275 85 0 0 chr1 5481178 5481225 -237183128 + L1PA3 LINE L1 6109 6155 0 * 302 285 85 72 chr1 5483345 5483580 -237180773 + L2 LINE L2 2855 3092 -180 24 0 0 0 chr1 5483642 5483666 -237180687 + AT_rich Low_complexity Low_complexity 1 24 0 962 209 134 110 chr1 5483682 5484128 -237180225 + MLT1C LTR MaLR 1 457 -10 213 255 138 0 chr1 5484160 5484254 -237180099 + L2 LINE L2 3161 3267 -5 764 174 7 0 chr1 5485187 5485342 -237179011 - L1MB5 LINE L1 -2 6172 6017 199 340 147 0 chr1 5487642 5487798 -237176555 + L2 LINE L2 2999 3177 -95 254 211 84 0 chr1 5489359 5489430 -237174923 + MLT1H1 LTR MaLR 1 77 -478 300 314 31 14 chr1 5489674 5489828 -237174525 + MLT1H1 LTR MaLR 400 554 -1 625 327 66 36 chr1 5490955 5491395 -237172958 - L2 LINE L2 -2 3311 2859 409 341 38 44 chr1 5491406 5491723 -237172630 + L2 LINE L2 2997 3311 -2 192 40 0 0 chr1 5491847 5491872 -237172481 + (CA)n Simple_repeat Simple_repeat 2 26 0 5093 112 38 17 chr1 5491958 5492823 -237171530 + L1PB2 LINE L1 5266 6148 -3 327 347 41 0 chr1 5492835 5492982 -237171371 - MIR SINE MIR -102 160 8 505 294 72 21 chr1 5493148 5493342 -237171011 + MIR SINE MIR 2 205 -57 1390 285 22 22 chr1 5493342 5493795 -237170558 + L1MCc LINE L1 17 469 -5954 1557 259 46 88 chr1 5493885 5494873 -237169480 + L1MCc LINE L1 657 1773 -4848 432 301 20 33 chr1 5495126 5495279 -237169074 - MIR SINE MIR -16 246 96 476 292 7 0 chr1 5495485 5495622 -237168731 - MIR SINE MIR -41 221 84 281 243 81 27 chr1 5495808 5495919 -237168434 + MLT1K LTR MaLR 465 581 -7 26 30 0 0 chr1 5496837 5496870 -237167483 + AT_rich Low_complexity Low_complexity 1 33 0 1894 164 59 16 chr1 5497115 5497486 -237166867 + MLT1B LTR MaLR 1 387 -3 430 267 44 7 chr1 5497916 5498040 -237166313 + MLT1H1 LTR MaLR 1 132 -423 1895 145 37 14 chr1 5498040 5498165 -237166188 + AluSx SINE Alu 1 122 -190 285 51 0 0 chr1 5498165 5498204 -237166149 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1895 145 37 14 chr1 5498204 5498374 -237165979 + AluSx SINE Alu 122 303 -9 978 213 21 28 chr1 5498407 5498735 -237165618 - MLT2B1 LTR ERVL 0 520 149 300 146 0 0 chr1 5498736 5498784 -237165569 - MLT2B1 LTR ERVL -472 48 1 343 266 133 36 chr1 5498785 5499049 -237165304 + MLT1H LTR MaLR 189 539 -10 2364 103 0 0 chr1 5499668 5499968 -237164385 - AluSq SINE Alu -13 300 1 506 235 0 3 chr1 5500021 5500324 -237164029 + (TG)n Simple_repeat Simple_repeat 1 301 0 21 36 0 0 chr1 5500904 5500932 -237163421 + AT_rich Low_complexity Low_complexity 1 28 0 1531 231 56 7 chr1 5502061 5502506 -237161847 + MLT1C LTR MaLR 1 467 0 1181 182 40 16 chr1 5502690 5502943 -237161410 - MLT1B LTR MaLR -21 369 111 2273 102 0 0 chr1 5503109 5503422 -237160931 + AluSx SINE Alu 1 313 0 1833 187 11 125 chr1 5504969 5505318 -237159035 - L1MB8 LINE L1 -1 6177 5790 2403 76 3 10 chr1 5505318 5505619 -237158734 - AluSg SINE Alu -11 299 1 1833 187 11 125 chr1 5505619 5505873 -237158480 - L1MB8 LINE L1 -388 5790 5645 2284 102 36 33 chr1 5505873 5506236 -237158117 - THE1B LTR MaLR 0 364 1 1833 187 11 125 chr1 5506236 5506257 -237158096 - L1MB8 LINE L1 -533 5645 5623 227 222 194 9 chr1 5506949 5507057 -237157296 - L2 LINE L2 -4 3268 3141 1081 225 29 29 chr1 5507253 5507569 -237156784 - LTR53 LTR ERVL 0 519 204 618 297 32 86 chr1 5508799 5509207 -237155146 - L2 LINE L2 -6 3307 2922 24 0 0 0 chr1 5509836 5509860 -237154493 + AT_rich Low_complexity Low_complexity 1 24 0 245 382 89 21 chr1 5511326 5511517 -237152836 - MIR SINE MIR -12 250 47 341 345 72 52 chr1 5511805 5512289 -237152064 - MLT1J LTR MaLR -15 496 3 869 287 6 18 chr1 5512673 5513004 -237151349 + L1ME4a LINE L1 5592 5918 -203 352 258 52 71 chr1 5513033 5513157 -237151196 + MIR SINE MIR 20 142 -120 2249 129 7 0 chr1 5513157 5513460 -237150893 + AluSq SINE Alu 1 305 -8 352 258 52 71 chr1 5513460 5513490 -237150863 + MIR SINE MIR 142 171 -91 189 375 0 29 chr1 5513514 5513618 -237150735 - L3 LINE CR1 -75 1502 1402 1073 157 0 0 chr1 5513687 5513853 -237150500 - FRAM SINE Alu 0 166 1 2175 122 3 0 chr1 5514232 5514526 -237149827 + AluSc SINE Alu 1 295 -14 1809 179 24 3 chr1 5514661 5515002 -237149351 - THE1A LTR MaLR -1 354 7 528 96 0 0 chr1 5515002 5515075 -237149278 - THE1B LTR MaLR -291 73 1 1917 246 17 2 chr1 5515266 5515729 -237148624 + L1MB5 LINE L1 5704 6173 -1 1989 168 0 0 chr1 5515811 5516115 -237148238 - AluJb SINE Alu 0 312 9 204 254 16 32 chr1 5516222 5516285 -237148068 - MIR3 SINE MIR -132 76 15 241 236 22 67 chr1 5516549 5516638 -237147715 - L2 LINE L2 -1 3271 3187 1120 192 27 5 chr1 5517280 5517499 -237146854 - MLT1A1 LTR MaLR 0 365 142 5403 140 3 21 chr1 5517510 5517850 -237146503 - L1MA6 LINE L1 0 6300 5955 2033 132 10 23 chr1 5517850 5518160 -237146193 - AluY SINE Alu -5 306 1 5403 140 3 21 chr1 5518160 5518781 -237145572 - L1MA6 LINE L1 -345 5955 5356 1480 186 11 55 chr1 5518783 5519149 -237145204 + L1 LINE L1 4957 5306 -840 847 178 29 11 chr1 5519157 5519331 -237145022 - MLT1A1 LTR MaLR -188 177 1 1221 211 71 6 chr1 5519538 5519860 -237144493 + MER89 LTR ERV1 208 550 -9 1489 194 19 16 chr1 5520539 5520734 -237143619 + L1MA8 LINE L1 5977 6175 -116 2516 144 16 11 chr1 5520734 5521177 -237143176 - MER65A LTR ERV1 0 445 1 1489 194 19 16 chr1 5521177 5521291 -237143062 + L1MA8 LINE L1 6175 6287 -4 2468 99 0 0 chr1 5521380 5521693 -237142660 - AluSq SINE Alu 0 313 1 301 310 70 14 chr1 5521939 5522081 -237142272 - MIR SINE MIR -43 219 70 1077 152 11 0 chr1 5522196 5522380 -237141973 + L1PA15 LINE L1 5967 6152 -13 21 0 0 0 chr1 5522387 5522408 -237141945 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 5522532 5522553 -237141800 + AT_rich Low_complexity Low_complexity 1 21 0 273 319 21 49 chr1 5523345 5523489 -237140864 - MIR SINE MIR -51 211 72 262 269 0 13 chr1 5523617 5523695 -237140658 - MER58A DNA MER1_type -3 221 145 1930 113 3 24 chr1 5523700 5524053 -237140300 - MER4A LTR ERV1 0 664 261 638 131 0 10 chr1 5524053 5524152 -237140201 - MER4A LTR ERV1 -566 98 1 431 200 16 96 chr1 5524173 5524298 -237140055 - MER58A DNA MER1_type 0 119 5 2570 145 54 2 chr1 5524376 5524838 -237139515 - LTR19A LTR ERV1 0 486 1 324 331 138 37 chr1 5525189 5525485 -237138868 - L2 LINE L2 -84 3188 2863 2283 113 0 0 chr1 5526069 5526371 -237137982 + AluSg SINE Alu 1 302 -8 1183 246 96 46 chr1 5526398 5526919 -237137434 - MLT1E2 LTR MaLR 0 626 80 306 273 29 14 chr1 5526806 5526945 -237137408 - MLT2C1 LTR ERVL -199 198 58 * 184 341 47 24 chr1 5527421 5527506 -237136847 - L2 LINE L2 -542 2772 2686 439 280 86 5 chr1 5527507 5527693 -237136660 + L1MEd LINE L1 2 202 -5917 211 79 79 87 chr1 5527818 5527944 -237136409 + (AGGTG)n Simple_repeat Simple_repeat 1 125 0 326 326 30 68 chr1 5528114 5528431 -237135922 + L1MEd LINE L1 393 753 -5366 334 269 211 27 chr1 5528528 5528751 -237135602 + L2 LINE L2 2247 2510 -804 555 333 83 22 chr1 5529100 5529778 -237134575 + L1MB3 LINE L1 3990 4708 -1438 3103 160 78 66 chr1 5529933 5530616 -237133737 + LTR8 LTR ERV1 1 691 0 444 327 30 49 chr1 5531170 5531436 -237132917 + L1MB3 LINE L1 4973 5233 -913 980 221 0 0 chr1 5531442 5531641 -237132712 - MLT1B LTR MaLR 0 390 192 544 238 60 38 chr1 5532950 5533135 -237131218 + MER69 DNA AcHobo 168 356 -2170 694 177 0 0 chr1 5533135 5533258 -237131095 - MLT1B LTR MaLR 0 390 268 2607 86 77 20 chr1 5533258 5533282 -237131071 + MSTA LTR MaLR 1 22 -406 1934 140 184 11 chr1 5533282 5533647 -237130706 - MSTA LTR MaLR 0 428 1 2607 86 77 20 chr1 5533647 5534027 -237130326 + MSTA LTR MaLR 22 428 0 1337 153 97 0 chr1 5534027 5534275 -237130078 - MLT1B LTR MaLR -118 272 1 587 216 144 10 chr1 5534366 5534574 -237129779 + MER69 DNA AcHobo 2289 2524 -2 198 302 16 16 chr1 5534653 5534716 -237129637 + MIR SINE MIR 198 260 -2 417 226 0 0 chr1 5535194 5535287 -237129066 - L1MA7 LINE L1 -3 6288 6196 792 202 10 52 chr1 5535379 5535572 -237128781 - MER58A DNA MER1_type 0 224 40 2817 190 52 34 chr1 5535572 5536227 -237128126 + L1MB3 LINE L1 5461 6103 -80 2084 144 3 0 chr1 5536227 5536519 -237127834 + AluSx SINE Alu 1 293 -19 2326 90 7 7 chr1 5536522 5536822 -237127531 + AluSx SINE Alu 1 300 -12 2817 190 52 34 chr1 5536822 5536872 -237127481 + L1MB3 LINE L1 6104 6183 0 186 155 36 179 chr1 5537032 5537116 -237127237 - L3 LINE CR1 -1279 298 227 2294 132 3 0 chr1 5539066 5539376 -237124977 - AluSp SINE Alu -2 311 1 289 216 27 14 chr1 5540423 5540497 -237123856 - MLT1I LTR MaLR -27 382 308 1748 185 3 55 chr1 5540920 5541139 -237123214 - MLT1A1 LTR MaLR -6 359 167 959 128 0 0 chr1 5541139 5541272 -237123081 - FLAM_C SINE Alu 0 133 1 1748 185 3 55 chr1 5541272 5541431 -237122922 - MLT1A1 LTR MaLR -198 167 1 2157 249 60 18 chr1 5541619 5542241 -237122112 - MER21B LTR ERV1 -78 785 138 486 190 0 0 chr1 5542367 5542446 -237121907 - MER21B LTR ERV1 -773 90 12 538 231 0 22 chr1 5543039 5543221 -237121132 + (TATG)n Simple_repeat Simple_repeat 3 180 0 237 296 0 0 chr1 5543235 5543333 -237121020 + (TA)n Simple_repeat Simple_repeat 2 99 0 * 490 257 0 22 chr1 5543327 5543510 -237120843 + (TATG)n Simple_repeat Simple_repeat 1 179 0 180 204 27 48 chr1 5543730 5543877 -237120476 + (CATATA)n Simple_repeat Simple_repeat 1 144 0 201 217 0 0 chr1 5544042 5544125 -237120228 + (CA)n Simple_repeat Simple_repeat 1 83 0 215 83 0 83 chr1 5544265 5544313 -237120040 + (CA)n Simple_repeat Simple_repeat 1 44 0 234 315 11 44 chr1 5545121 5545302 -237119051 + (CGGGG)n Simple_repeat Simple_repeat 5 179 0 2019 169 21 3 chr1 5546496 5546833 -237117520 - MER61A LTR ERV1 0 343 1 1105 218 27 27 chr1 5546908 5547206 -237117147 - MLT1C LTR MaLR -4 463 166 508 266 156 0 chr1 5547231 5547423 -237116930 - MER31B LTR ERV1 -25 441 220 567 236 50 0 chr1 5547656 5547796 -237116557 - MLT1C LTR MaLR -240 150 4 254 269 172 59 chr1 5547844 5548234 -237116119 - LTR16A1 LTR ERVL -6 451 18 231 200 0 0 chr1 5548234 5548279 -237116074 + (CAGGG)n Simple_repeat Simple_repeat 4 48 0 26 50 0 0 chr1 5548915 5548955 -237115398 + AT_rich Low_complexity Low_complexity 1 40 0 408 278 0 53 chr1 5550393 5550544 -237113809 + L2 LINE L2 3171 3313 0 528 208 25 0 chr1 5550580 5550700 -237113653 - MLT1D LTR MaLR -8 497 375 1439 138 58 7 chr1 5550704 5550920 -237113433 + MER61D LTR ERV1 1 205 -296 468 0 0 0 chr1 5550920 5550972 -237113381 + (CA)n Simple_repeat Simple_repeat 2 53 0 1439 138 58 7 chr1 5550972 5551161 -237113192 + MER61D LTR ERV1 205 501 0 1293 215 45 53 chr1 5551162 5551538 -237112815 - MLT1D LTR MaLR -132 373 1 188 296 34 80 chr1 5551585 5551673 -237112680 + L2 LINE L2 3185 3268 -4 416 303 92 16 chr1 5551826 5552011 -237112342 - MIR SINE MIR -1 261 63 228 224 0 20 chr1 5552537 5552586 -237111767 + GA-rich Low_complexity Low_complexity 3 50 0 262 353 24 39 chr1 5553471 5553678 -237110675 + L2 LINE L2 3109 3312 -1 1777 159 0 17 chr1 5553879 5554175 -237110178 - AluSx SINE Alu 0 312 22 231 36 0 0 chr1 5554941 5554969 -237109384 + (CA)n Simple_repeat Simple_repeat 1 28 0 1895 160 0 11 chr1 5556332 5556653 -237107700 - AluJb SINE Alu 0 320 3 228 296 78 39 chr1 5556694 5556951 -237107402 + L1MEd LINE L1 1402 1668 -4862 287 304 43 52 chr1 5557021 5557347 -237107006 + HAL1 LINE L1 1424 1746 -761 367 280 158 41 chr1 5557420 5557814 -237106539 + L1MEd LINE L1 2330 3735 -2805 386 282 112 30 chr1 5557878 5558353 -237106000 + L1MEd LINE L1 3276 3789 -2751 21 0 0 0 chr1 5558362 5558383 -237105970 + AT_rich Low_complexity Low_complexity 1 21 0 488 294 46 18 chr1 5558457 5558675 -237105678 + L1MEd LINE L1 3981 4204 -2336 4076 133 13 39 chr1 5558798 5559514 -237104839 + MER50 LTR ERV1 14 710 -24 235 185 19 37 chr1 5559620 5559674 -237104679 + GA-rich Low_complexity Low_complexity 3 55 0 586 309 66 18 chr1 5559780 5560295 -237104058 + L1MEd LINE L1 4523 5062 -1478 2407 122 111 8 chr1 5560358 5560744 -237103609 - MSTB LTR MaLR 0 426 1 492 283 143 12 chr1 5561048 5561299 -237103054 + MLT1J LTR MaLR 226 509 -2 354 292 70 39 chr1 5561327 5561889 -237102464 + L1MEd LINE L1 5297 5879 -727 260 265 147 29 chr1 5561910 5562046 -237102307 - L2 LINE L2 -246 3067 2916 2030 149 3 3 chr1 5563593 5563889 -237100464 + AluSx SINE Alu 3 298 -14 379 356 54 0 chr1 5565222 5565371 -237098982 + MER5B DNA MER1_type 6 162 -16 2295 80 0 0 chr1 5566447 5566761 -237097592 - L1PA8 LINE L1 -286 5886 5573 2332 56 20 0 chr1 5566762 5567064 -237097289 + L1PA8 LINE L1 5863 6170 -2 868 210 28 40 chr1 5567092 5567344 -237097009 - L1MB3 LINE L1 -4 6179 5931 2518 181 89 20 chr1 5567365 5567973 -237096380 - L1MC3 LINE L1 -12 7773 7124 1821 184 10 7 chr1 5568434 5568738 -237095615 + AluJo SINE Alu 1 305 -7 258 101 45 45 chr1 5568920 5569009 -237095344 + (TTTAA)n Simple_repeat Simple_repeat 4 92 0 3765 209 47 19 chr1 5570098 5570901 -237093452 + LTR1B LTR ERV1 1 826 0 560 286 7 0 chr1 5571636 5571783 -237092570 - MER3 DNA MER1_type -61 148 1 354 23 0 0 chr1 5572644 5572687 -237091666 + (CA)n Simple_repeat Simple_repeat 1 43 0 1641 216 29 3 chr1 5575707 5576058 -237088295 - MLT1A1 LTR MaLR 0 365 6 400 176 232 31 chr1 5576909 5577036 -237087317 - L1ME1 LINE L1 0 6334 6024 5342 203 30 31 chr1 5577038 5579277 -237085076 - L1MC1 LINE L1 0 6333 4083 2601 89 47 6 chr1 5579277 5579637 -237084716 - THE1C LTR MaLR 0 375 1 5342 203 30 31 chr1 5579637 5579656 -237084697 - L1MC1 LINE L1 -2250 4083 4065 323 322 131 20 chr1 5580432 5580631 -237083722 + MIR SINE MIR 8 228 -34 2198 171 24 31 chr1 5581450 5581871 -237082482 - MSTB LTR MaLR 0 426 9 283 241 45 62 chr1 5581930 5582042 -237082311 + MIR SINE MIR 34 143 -119 607 327 40 4 chr1 5582186 5582464 -237081889 + MLT1I LTR MaLR 119 406 -3 460 319 48 29 chr1 5582535 5582742 -237081611 + L2 LINE L2 3075 3285 -28 208 333 12 0 chr1 5582749 5582830 -237081523 + (CA)n Simple_repeat Simple_repeat 1 82 0 486 238 38 75 chr1 5582847 5583007 -237081346 - MIR SINE MIR -36 226 73 184 341 91 23 chr1 5583283 5583371 -237080982 + MER5B DNA MER1_type 39 132 -46 871 179 10 51 chr1 5583947 5584143 -237080210 + MLT1C LTR MaLR 1 188 -279 * 1382 181 7 34 chr1 5584142 5584435 -237079918 + MLT1C LTR MaLR 152 436 -31 2117 143 28 33 chr1 5584776 5585139 -237079214 - THE1B LTR MaLR -3 361 1 304 325 85 37 chr1 5585568 5585795 -237078558 + MLT1L LTR MaLR 350 591 -24 2348 134 111 8 chr1 5585795 5586183 -237078170 + MSTA LTR MaLR 1 428 0 304 325 85 37 chr1 5586183 5586201 -237078152 + MLT1L LTR MaLR 591 607 -8 1615 162 61 19 chr1 5586826 5587228 -237077125 - MLT1C LTR MaLR 0 467 8 28 0 0 0 chr1 5587940 5587968 -237076385 + AT_rich Low_complexity Low_complexity 1 28 0 225 227 30 15 chr1 5588050 5588116 -237076237 - MER21B LTR ERV1 -184 679 613 437 250 97 109 chr1 5588117 5588390 -237075963 - MER77 LTR ERV1 -4 601 318 2719 113 0 0 chr1 5588390 5588754 -237075599 + THE1B LTR MaLR 1 364 0 437 250 97 109 chr1 5588754 5589010 -237075343 - MER77 LTR ERV1 -287 318 60 3578 113 22 61 chr1 5589012 5590088 -237074265 + MER11A LTR ERVK 1 1071 0 1861 136 0 0 chr1 5590690 5590941 -237073412 - AluSx SINE Alu -22 290 40 1501 199 62 17 chr1 5591016 5591368 -237072985 + MLT1B LTR MaLR 1 368 -22 336 102 0 0 chr1 5592127 5592176 -237072177 + (TCC)n Simple_repeat Simple_repeat 3 51 0 1612 179 12 52 chr1 5592178 5592503 -237071850 - AluJo SINE Alu 0 312 1 367 310 87 20 chr1 5592506 5592761 -237071592 - L1ME4a LINE L1 -234 5887 5618 191 331 60 46 chr1 5593765 5593916 -237070437 + MIR SINE MIR 10 162 -100 254 194 15 0 chr1 5594459 5594526 -237069827 + CT-rich Low_complexity Low_complexity 4 71 0 262 262 107 0 chr1 5594562 5594665 -237069688 - L1ME2 LINE L1 -10 6154 6041 2162 112 31 3 chr1 5594675 5595011 -237069342 + AluSg SINE Alu 6 349 0 1397 239 55 42 chr1 5595014 5595558 -237068795 - L1ME2 LINE L1 -110 6054 5504 2417 136 63 29 chr1 5595833 5596245 -237068108 + MSTB LTR MaLR 1 426 0 656 315 28 0 chr1 5596354 5596567 -237067786 + MIR SINE MIR 15 233 -29 230 336 77 0 chr1 5596705 5596809 -237067544 + L2 LINE L2 2686 2797 -517 193 274 142 28 chr1 5596953 5597059 -237067294 + L2 LINE L2 2969 3086 -186 185 239 22 0 chr1 5597169 5597215 -237067138 + L2 LINE L2 3265 3311 -2 350 279 6 0 chr1 5597216 5597374 -237066979 + (TGGA)n Simple_repeat Simple_repeat 1 159 0 269 258 17 17 chr1 5597367 5597498 -237066855 + (TGGG)n Simple_repeat Simple_repeat 3 136 -44 * 2112 154 118 26 chr1 5597498 5597888 -237066465 + MSTA LTR MaLR 1 426 -2 269 258 17 17 chr1 5597888 5597934 -237066419 + (TGGG)n Simple_repeat Simple_repeat 135 180 0 801 220 3 7 chr1 5597945 5598254 -237066099 + (TGGA)n Simple_repeat Simple_repeat 1 307 0 489 253 0 0 chr1 5598284 5598446 -237065907 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 432 254 0 27 chr1 5598451 5598561 -237065792 + (TGGG)n Simple_repeat Simple_repeat 2 108 0 187 221 117 0 chr1 5599688 5599765 -237064588 + L2 LINE L2 1639 1724 -1590 1054 165 385 15 chr1 5599765 5600105 -237064248 + MER31B LTR ERV1 1 466 0 1315 314 73 26 chr1 5600106 5600766 -237063587 + L2 LINE L2 1722 2412 -902 513 221 0 19 chr1 5600765 5600869 -237063484 - L2 LINE L2 0 3313 3212 * 507 336 22 18 chr1 5600859 5600949 -237063404 + L2 LINE L2 2397 2485 -829 * 1145 205 14 0 chr1 5600949 5601164 -237063189 + MER20 DNA MER1_type 2 219 0 507 336 22 18 chr1 5601164 5601299 -237063054 + L2 LINE L2 2485 2623 -691 299 202 11 0 chr1 5601427 5601516 -237062837 + (CAT)n Simple_repeat Simple_repeat 2 91 0 730 169 6 12 chr1 5601530 5601702 -237062651 + (CAT)n Simple_repeat Simple_repeat 2 172 0 483 218 11 11 chr1 5601718 5601892 -237062461 + (CAT)n Simple_repeat Simple_repeat 1 174 0 263 194 32 0 chr1 5601902 5601964 -237062389 + (CACCAT)n Simple_repeat Simple_repeat 2 65 0 510 217 18 0 chr1 5601969 5602135 -237062218 + (CAT)n Simple_repeat Simple_repeat 2 170 0 471 206 14 7 chr1 5602163 5602304 -237062049 + (CAT)n Simple_repeat Simple_repeat 2 143 0 466 215 82 138 chr1 5602463 5602658 -237061695 + MIR SINE MIR 30 213 -49 213 269 67 76 chr1 5602623 5602742 -237061611 - MIR3 SINE MIR -7 201 84 * 1686 222 71 5 chr1 5604253 5604676 -237059677 - MLT1C LTR MaLR -16 451 1 1337 232 41 11 chr1 5604955 5605317 -237059036 - MLT1A2 LTR MaLR 0 374 2 24 0 0 0 chr1 5606035 5606059 -237058294 + AT_rich Low_complexity Low_complexity 1 24 0 2372 130 54 2 chr1 5606140 5606361 -237057992 - MSTA LTR MaLR 0 428 220 4249 54 4 2 chr1 5606361 5606881 -237057472 - L1PA6 LINE L1 0 6154 5634 2372 130 54 2 chr1 5606881 5607066 -237057287 - MSTA LTR MaLR -208 220 1 238 343 14 0 chr1 5607075 5607145 -237057208 - L2 LINE L2 0 3313 3243 795 239 123 51 chr1 5607354 5607647 -237056706 - MLT1J LTR MaLR -157 354 41 936 258 65 53 chr1 5609252 5609670 -237054683 - MLT1C LTR MaLR -1 466 44 237 224 17 17 chr1 5610503 5610561 -237053792 + MER5A DNA MER1_type 19 76 -113 * 322 235 37 0 chr1 5610553 5610634 -237053719 - MER5A DNA MER1_type -80 109 26 222 174 0 0 chr1 5611299 5611345 -237053008 + T-rich Low_complexity Low_complexity 1 46 0 207 249 65 60 chr1 5611738 5611834 -237052519 + MIR SINE MIR 65 146 -62 969 270 86 8 chr1 5611963 5612322 -237052031 - MLT1C LTR MaLR -28 439 53 1003 184 50 0 chr1 5613347 5613543 -237050810 - Tigger7 DNA MER2_type 0 2587 2382 2746 104 46 0 chr1 5613543 5613958 -237050395 - LTR1 LTR ERV1 0 785 352 753 165 0 0 chr1 5613963 5614127 -237050226 + CT-rich Low_complexity Low_complexity 1 164 0 325 257 0 55 chr1 5616051 5616160 -237048193 + MIR SINE MIR 40 142 -120 330 320 0 0 chr1 5616380 5616480 -237047873 + MIR SINE MIR 161 260 -2 764 250 85 4 chr1 5616482 5616718 -237047635 - MIR SINE MIR 0 262 8 398 290 10 5 chr1 5617465 5617678 -237046675 + (CA)n Simple_repeat Simple_repeat 1 214 0 591 230 67 12 chr1 5617678 5617843 -237046510 + MLT1C LTR MaLR 287 460 -7 382 246 57 8 chr1 5617855 5617977 -237046376 + MLT1J1 LTR MaLR 248 375 -71 335 206 118 113 chr1 5618522 5618660 -237045693 + LTR50 LTR ERVL 564 700 -95 2557 77 0 0 chr1 5618660 5618971 -237045382 - AluY SINE Alu 0 311 1 2022 132 35 0 chr1 5618971 5619259 -237045094 - AluSp SINE Alu -15 298 1 335 206 118 113 chr1 5619259 5619323 -237045030 + LTR50 LTR ERVL 699 768 -27 251 271 112 48 chr1 5620481 5620669 -237043684 + L2 LINE L2 2466 2665 -649 496 208 101 13 chr1 5620671 5620820 -237043533 + MLT1C LTR MaLR 7 168 -299 5552 54 8 11 chr1 5620908 5621615 -237042738 - L1PA7 LINE L1 0 6154 5450 673 264 67 11 chr1 5621618 5621902 -237042451 + MLT1C LTR MaLR 168 467 0 1785 90 5 0 chr1 5622267 5622489 -237041864 - AluSg/x SINE Alu -13 299 77 241 206 48 0 chr1 5622593 5622656 -237041697 + CT-rich Low_complexity Low_complexity 2 67 0 306 73 0 0 chr1 5622658 5622699 -237041654 + (CA)n Simple_repeat Simple_repeat 2 42 0 458 318 34 0 chr1 5622941 5623120 -237041233 - L1ME LINE L1 -456 5714 5530 299 219 12 61 chr1 5623138 5623220 -237041133 - L2 LINE L2 0 3313 3236 364 364 10 2 chr1 5623242 5623369 -237040984 + MIR SINE MIR 28 154 -54 298 231 0 50 chr1 5623370 5623491 -237040862 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 275 252 191 8 chr1 5623596 5623727 -237040626 + MIR SINE MIR 108 262 0 727 234 11 22 chr1 5623736 5623920 -237040433 - MER90 LTR ERV1 0 614 433 1101 221 204 3 chr1 5624059 5624416 -237039937 - MER90 LTR ERV1 -130 445 17 1797 113 51 90 chr1 5624850 5625240 -237039113 - THE1C LTR MaLR 0 375 1 1366 226 45 25 chr1 5625249 5625697 -237038656 + MLT1C LTR MaLR 1 467 0 370 202 22 22 chr1 5627419 5627508 -237036845 - MER92B LTR ERV1 -2 634 546 1756 224 95 25 chr1 5627760 5628309 -237036044 - MER92B LTR ERV1 -49 587 1 689 360 34 24 chr1 5628364 5628692 -237035661 - HERV16 LTR ERVL -2020 2976 2646 1848 156 0 29 chr1 5629896 5630203 -237034150 + AluJb SINE Alu 1 298 -14 358 318 34 20 chr1 5630466 5630614 -237033739 - MER5A DNA MER1_type -8 181 32 * 508 271 23 8 chr1 5630499 5630632 -237033721 + MER5A DNA MER1_type 55 189 0 203 242 65 0 chr1 5630823 5630885 -237033468 - L2 LINE L2 -6 3266 3201 182 385 8 8 chr1 5631023 5631145 -237033208 + L2 LINE L2 1705 1826 -1488 997 193 42 146 chr1 5631203 5631560 -237032793 - MLT1C LTR MaLR 0 390 71 420 19 0 0 chr1 5631559 5631611 -237032742 + THE1C LTR MaLR 123 174 -201 * 1503 150 62 11 chr1 5632304 5632577 -237031776 - THE1C LTR MaLR 0 375 89 1105 104 37 0 chr1 5632575 5632739 -237031614 - THE1C LTR MaLR -203 172 3 * 482 307 73 0 chr1 5633176 5633381 -237030972 + MIR SINE MIR 14 233 -29 510 270 55 18 chr1 5634240 5634403 -237029950 + MIR SINE MIR 85 253 -9 984 151 0 0 chr1 5634417 5634455 -237029898 + (CAT)n Simple_repeat Simple_repeat 1 217 0 984 151 0 0 chr1 5634455 5634634 -237029719 + (CAT)n Simple_repeat Simple_repeat 1 179 0 962 120 23 0 chr1 5634759 5634934 -237029419 + (CAT)n Simple_repeat Simple_repeat 1 179 0 408 302 50 23 chr1 5635091 5635266 -237029087 - MIR SINE MIR -48 214 34 925 124 0 0 chr1 5636344 5636473 -237027880 - AluSg1 SINE Alu -180 129 1 320 200 294 0 chr1 5636474 5636559 -237027794 - MER3 DNA MER1_type -95 114 5 429 303 12 36 chr1 5636567 5636732 -237027621 + L2 LINE L2 3151 3311 -2 730 274 100 20 chr1 5636921 5637220 -237027133 + MLT1I LTR MaLR 87 409 0 348 83 0 0 chr1 5637446 5637494 -237026859 + (CTATT)n Simple_repeat Simple_repeat 4 51 0 948 146 0 0 chr1 5637496 5637674 -237026679 + (CATTC)n Simple_repeat Simple_repeat 3 180 0 633 186 0 0 chr1 5637675 5637804 -237026549 + (CACTC)n Simple_repeat Simple_repeat 2 130 0 207 0 0 0 chr1 5639079 5639102 -237025251 + (TG)n Simple_repeat Simple_repeat 1 23 0 2138 226 12 53 chr1 5640057 5640562 -237023791 - MER66B LTR ERV1 -2 484 1 2288 130 37 11 chr1 5640715 5641070 -237023283 - THE1B LTR MaLR 0 364 1 230 303 64 9 chr1 5641471 5641580 -237022773 + MIR SINE MIR 133 247 -15 2846 35 15 0 chr1 5643697 5644037 -237020316 + L1PA4 LINE L1 5811 6155 0 274 207 0 0 chr1 5644077 5644135 -237020218 - Charlie5 DNA MER1_type -2522 90 33 1832 133 7 4 chr1 5645683 5645961 -237018392 - AluSx SINE Alu -13 299 21 2418 229 54 57 chr1 5646001 5646210 -237018143 - L1ME2 LINE L1 -9 6155 5947 820 291 43 78 chr1 5646210 5646902 -237017451 - L1MB1 LINE L1 -258 5931 5264 1890 286 52 37 chr1 5646911 5647784 -237016569 - L1ME2 LINE L1 -841 5305 4420 1216 134 259 14 chr1 5647793 5648083 -237016270 - MSTA LTR MaLR -67 361 1 9739 133 32 35 chr1 5648083 5649666 -237014687 - MSTA-int LTR MaLR 0 1580 3 1933 144 174 11 chr1 5649668 5650036 -237014317 - MSTA LTR MaLR 0 428 1 254 261 61 26 chr1 5650087 5650202 -237014151 + MLT1I LTR MaLR 19 137 -272 279 325 103 17 chr1 5650389 5650506 -237013847 + MLT1H LTR MaLR 407 533 -16 339 250 267 30 chr1 5650546 5650842 -237013511 - L2 LINE L2 -974 2340 1975 1803 203 16 18 chr1 5650844 5651228 -237013125 - MER89 LTR ERV1 -2 557 175 194 293 0 0 chr1 5651242 5651300 -237013053 - L2 LINE L2 -1333 1981 1924 349 270 43 74 chr1 5651326 5651556 -237012797 - L2 LINE L2 -1487 1827 1605 1357 214 85 55 chr1 5651600 5652034 -237012319 + MLT1C LTR MaLR 6 452 -15 1178 234 114 91 chr1 5652146 5652841 -237011512 - MER21B LTR ERV1 -130 733 23 991 30 15 0 chr1 5652841 5652972 -237011381 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 210 71 0 0 chr1 5653002 5653030 -237011323 + (CA)n Simple_repeat Simple_repeat 2 29 0 2100 113 0 0 chr1 5653030 5653314 -237011039 - AluSc SINE Alu -22 287 1 348 310 9 9 chr1 5654700 5654813 -237009540 + MER81 DNA DNA 2 114 0 214 316 0 0 chr1 5655028 5655085 -237009268 + (TG)n Simple_repeat Simple_repeat 1 57 0 2755 107 11 5 chr1 5655748 5656121 -237008232 - THE1C LTR MaLR 0 375 1 246 62 0 0 chr1 5657063 5657095 -237007258 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 260 359 17 0 chr1 5657095 5657212 -237007141 - L2 LINE L2 -13 3300 3182 181 318 218 13 chr1 5659330 5659569 -237004784 - L2 LINE L2 -4 3268 2981 1198 198 12 12 chr1 5659677 5659920 -237004433 - AluJo SINE Alu -69 243 1 377 325 49 25 chr1 5659922 5660085 -237004268 + MIR SINE MIR 65 231 -31 420 320 132 48 chr1 5660102 5660352 -237004001 - LTR16A1 LTR ERVL 0 457 187 279 79 0 0 chr1 5660472 5660510 -237003843 + (TA)n Simple_repeat Simple_repeat 2 39 0 2151 101 0 3 chr1 5660510 5660806 -237003547 - AluSx SINE Alu -17 295 1 1739 225 82 7 chr1 5660808 5661257 -237003096 + LTR53 LTR ERVL 23 505 -14 740 76 14 1 chr1 5661453 5661572 -237002781 + MSTA LTR MaLR 1 124 -302 1719 155 115 3 chr1 5661686 5662009 -237002344 + MSTA LTR MaLR 70 428 0 221 319 0 14 chr1 5662738 5662810 -237001543 - L2 LINE L2 -1 3271 3201 895 227 117 80 chr1 5665016 5665478 -236998875 + MLT2B1 LTR ERVL 42 520 0 303 206 33 60 chr1 5666177 5666361 -236997992 + (CACAG)n Simple_repeat Simple_repeat 1 179 0 337 173 29 64 chr1 5666382 5666555 -236997798 + (CACAA)n Simple_repeat Simple_repeat 5 171 0 399 206 41 0 chr1 5666764 5666861 -236997492 + MER89 LTR ERV1 1 101 -458 278 176 0 0 chr1 5667856 5667907 -236996446 + MLT1B LTR MaLR 299 349 -41 307 297 79 44 chr1 5667909 5668138 -236996215 - L2 LINE L2 -1262 2052 1816 198 326 61 10 chr1 5668177 5668275 -236996078 - MIR SINE MIR -109 153 51 257 215 0 31 chr1 5669086 5669151 -236995202 - MIR SINE MIR -107 155 93 242 219 37 0 chr1 5670727 5670809 -236993544 + (ATGGTG)n Simple_repeat Simple_repeat 2 86 0 1013 155 9 4 chr1 5670813 5671294 -236993059 + (ATG)n Simple_repeat Simple_repeat 1 662 0 1361 225 45 51 chr1 5671396 5671845 -236992508 + MER74A LTR ERVL 100 545 -13 324 308 125 47 chr1 5673943 5674407 -236989946 + L2 LINE L2 2233 2732 -582 302 335 30 37 chr1 5674703 5674778 -236989575 + L2 LINE L2 3107 3181 -132 2748 97 8 3 chr1 5674778 5675140 -236989213 + THE1B LTR MaLR 1 364 0 302 335 30 37 chr1 5675140 5675228 -236989125 + L2 LINE L2 3181 3269 -44 1115 132 2 8 chr1 5675247 5675727 -236988626 + (TGGA)n Simple_repeat Simple_repeat 1 477 0 659 207 12 0 chr1 5675741 5675910 -236988443 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 297 302 21 10 chr1 5675982 5676078 -236988275 - MIR SINE MIR -79 183 87 256 265 29 0 chr1 5676576 5676644 -236987709 - MER81 DNA DNA -1 113 44 * 488 247 0 0 chr1 5676643 5676736 -236987617 - MER81 DNA DNA -20 94 2 240 325 42 17 chr1 5677938 5678058 -236986295 - MIR SINE MIR -127 135 13 347 301 83 74 chr1 5678966 5679195 -236985158 - MIR SINE MIR -1 261 31 2213 265 23 5 chr1 5679205 5679821 -236984532 + L1ME3 LINE L1 5529 6155 -7 15459 218 22 7 chr1 5680186 5684576 -236979777 + L1PA13 LINE L1 1179 5663 -1134 478 116 147 0 chr1 5684581 5684676 -236979677 + AluSp/q SINE Alu 203 311 -2 566 337 30 17 chr1 5684688 5685050 -236979303 + L1PA13 LINE L1 5683 6049 -748 1339 123 5 9 chr1 5685264 5685475 -236978878 + L1PA15 LINE L1 5956 6165 0 23 0 0 0 chr1 5685475 5685498 -236978855 + AT_rich Low_complexity Low_complexity 1 23 0 220 271 0 0 chr1 5685610 5685669 -236978684 + (CACCAT)n Simple_repeat Simple_repeat 4 62 0 579 222 149 26 chr1 5685697 5685891 -236978462 + LTR16C LTR ERVL 272 489 -2 181 274 247 0 chr1 5685895 5685968 -236978385 + MIR SINE MIR 162 252 -10 3065 138 7 43 chr1 5686161 5686304 -236978049 - L1PA16 LINE L1 0 6166 6019 351 0 0 0 chr1 5686304 5686343 -236978010 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1645 168 0 34 chr1 5686343 5686635 -236977718 - AluJb SINE Alu -28 284 3 3065 138 7 43 chr1 5686635 5687047 -236977306 - L1PA16 LINE L1 -145 6021 5630 368 324 11 50 chr1 5687203 5687382 -236976971 + MIR SINE MIR 81 252 -10 294 286 52 59 chr1 5688016 5688156 -236976197 + MIR SINE MIR 18 154 -67 2103 119 3 0 chr1 5688164 5688467 -236975886 + AluSp SINE Alu 1 304 -9 664 278 62 73 chr1 5688539 5689021 -236975332 - MLT1J LTR MaLR -23 488 12 257 368 63 17 chr1 5690875 5691049 -236973304 + MIR SINE MIR 47 228 -34 430 279 0 95 chr1 5691411 5691590 -236972763 + MIR SINE MIR 24 185 -77 228 238 111 16 chr1 5691607 5691670 -236972683 + MLT1E LTR MaLR 1 69 -524 377 172 0 0 chr1 5691764 5691822 -236972531 + MLT1E LTR MaLR 81 138 -455 * 1309 204 135 13 chr1 5691813 5692247 -236972106 + MLT1E LTR MaLR 102 593 0 269 269 30 0 chr1 5692248 5692315 -236972038 + MIR SINE MIR 194 262 0 209 303 90 34 chr1 5693758 5693847 -236970506 - L2 LINE L2 -4 3268 3175 234 62 0 0 chr1 5693852 5693884 -236970469 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 243 133 0 0 chr1 5694243 5694288 -236970065 + (CA)n Simple_repeat Simple_repeat 2 46 0 2470 158 8 0 chr1 5694429 5694829 -236969524 - MER57A LTR ERV1 0 403 1 1342 216 102 12 chr1 5695982 5696325 -236968028 - MLT1A2 LTR MaLR 0 374 1 554 267 37 12 chr1 5696384 5696545 -236967808 - MIR SINE MIR -81 181 17 200 188 0 0 chr1 5696842 5696874 -236967479 + (TAAG)n Simple_repeat Simple_repeat 2 33 0 1999 118 7 13 chr1 5696958 5697264 -236967089 + AluSx SINE Alu 1 304 -8 483 107 0 0 chr1 5697271 5697346 -236967007 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 1558 286 94 34 chr1 5697383 5698683 -236965670 + L1ME LINE L1 64 1432 -4648 246 296 17 61 chr1 5698791 5698906 -236965447 - L2 LINE L2 -2 3311 3202 285 214 31 0 chr1 5699378 5699476 -236964877 + GA-rich Low_complexity Low_complexity 3 103 0 516 276 101 59 chr1 5700421 5700849 -236963504 + MLT1K LTR MaLR 167 587 -1 1776 29 0 5 chr1 5701530 5701740 -236962613 - L1PA4 LINE L1 -2 6153 5945 247 257 163 35 chr1 5703293 5703495 -236960858 + LTR33 LTR ERVL 47 274 -247 1521 187 93 12 chr1 5704809 5705146 -236959207 - MSTD LTR MaLR 0 396 30 769 255 32 19 chr1 5705233 5705449 -236958904 + MER20 DNA MER1_type 1 219 0 280 178 41 55 chr1 5705665 5705738 -236958615 + L1ME LINE L1 5536 5607 -563 615 282 96 13 chr1 5705935 5706175 -236958178 + L2 LINE L2 2109 2380 -934 1328 205 46 58 chr1 5706175 5706570 -236957783 + MLT1B LTR MaLR 1 390 0 615 282 96 13 chr1 5706570 5706630 -236957723 + L2 LINE L2 2380 2434 -880 384 254 17 0 chr1 5706690 5706867 -236957486 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 298 315 11 0 chr1 5706871 5706963 -236957390 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 577 216 6 11 chr1 5706964 5707140 -236957213 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 351 0 0 0 chr1 5707228 5707267 -236957086 + (CA)n Simple_repeat Simple_repeat 2 40 0 1011 300 114 15 chr1 5707269 5707865 -236956488 + L2 LINE L2 2498 3150 -163 475 344 74 6 chr1 5707910 5708262 -236956091 + L1MC4a LINE L1 5526 5901 -1907 798 224 15 15 chr1 5708289 5708485 -236955868 + L1MEd LINE L1 258 453 -5919 441 253 0 0 chr1 5708541 5708703 -236955650 + (TG)n Simple_repeat Simple_repeat 1 162 0 764 210 0 34 chr1 5708907 5709083 -236955270 + LTR9B LTR ERV1 392 561 -83 3272 137 0 4 chr1 5709558 5710054 -236954299 + LOR1a LTR ERV1 4 497 0 2592 149 31 2 chr1 5710300 5710716 -236953637 - MSTA LTR MaLR 0 428 1 434 258 223 40 chr1 5710723 5711019 -236953334 + L1MEd LINE L1 1349 1804 -4578 292 277 98 0 chr1 5711365 5711477 -236952876 - MIR3 SINE MIR -45 163 41 2237 127 21 29 chr1 5711875 5712253 -236952100 - THE1C LTR MaLR 0 375 1 10413 131 28 6 chr1 5712253 5713782 -236950571 - THE1C-int LTR MaLR 0 1580 19 1744 147 8 0 chr1 5713786 5714052 -236950301 + THE1C LTR MaLR 108 375 0 945 207 18 0 chr1 5714387 5714551 -236949802 + FAM SINE Alu 3 169 -6 453 216 74 34 chr1 5715064 5715212 -236949141 - MER103 DNA DNA 0 166 13 371 269 75 0 chr1 5715212 5715305 -236949048 - L2 LINE L2 -3 3310 3211 198 320 154 0 chr1 5715387 5715562 -236948791 - L2 LINE L2 -303 3010 2809 207 329 0 0 chr1 5715618 5715694 -236948659 - L2 LINE L2 -12 3301 3226 2564 319 48 15 chr1 5715775 5716852 -236947501 - HERV16 LTR ERVL -1901 3095 2092 23 42 0 21 chr1 5717630 5717656 -236946697 + AT_rich Low_complexity Low_complexity 1 27 -20 2202 97 3 3 chr1 5717656 5717964 -236946389 - AluSp SINE Alu -3 310 3 23 42 0 21 chr1 5717964 5717985 -236946368 + AT_rich Low_complexity Low_complexity 27 47 0 389 318 166 9 chr1 5718008 5718219 -236946134 + MIR SINE MIR 17 260 -2 201 287 161 69 chr1 5718263 5718437 -236945916 - L2 LINE L2 0 3272 3083 2320 157 34 31 chr1 5718441 5718988 -236945365 - MLT2A2 LTR ERVL 0 554 1 204 323 32 0 chr1 5719051 5719113 -236945240 - L2 LINE L2 -560 2754 2691 633 320 92 52 chr1 5719140 5719574 -236944779 + L1MEc LINE L1 55 537 -5859 1930 129 7 26 chr1 5719574 5719876 -236944477 + AluSg SINE Alu 6 301 -9 633 320 92 52 chr1 5719876 5720237 -236944116 + L1MEc LINE L1 537 882 -5514 354 360 35 38 chr1 5720339 5720653 -236943700 + L1 LINE L1 4710 5022 -1124 252 0 0 0 chr1 5720717 5720745 -236943608 + (A)n Simple_repeat Simple_repeat 1 28 0 5499 121 22 2 chr1 5720745 5721785 -236942568 + L1PA15 LINE L1 5021 6078 -87 1806 201 18 18 chr1 5722424 5722807 -236941546 - MER89 LTR ERV1 -2 557 175 203 293 0 0 chr1 5722821 5722879 -236941474 - L2 LINE L2 -1333 1981 1924 347 270 43 74 chr1 5722905 5723135 -236941218 - L2 LINE L2 -1487 1827 1605 881 232 102 68 chr1 5723179 5723563 -236940790 + MLT1C LTR MaLR 6 402 -65 1070 229 218 21 chr1 5724171 5724289 -236940064 - MLT1C LTR MaLR 0 467 374 2092 138 13 45 chr1 5724289 5724526 -236939827 + THE1B LTR MaLR 1 223 -141 2147 109 3 0 chr1 5724526 5724820 -236939533 + AluSp SINE Alu 1 295 -18 2092 138 13 45 chr1 5724820 5724958 -236939395 + THE1B LTR MaLR 223 364 0 1070 229 218 21 chr1 5724958 5725224 -236939129 - MLT1C LTR MaLR -93 374 7 431 232 129 0 chr1 5725434 5725589 -236938764 + MER96 DNA MER1_type 1 175 0 2352 18 0 7 chr1 5725805 5726082 -236938271 - AluYb8 SINE Alu -2 316 42 1980 170 66 28 chr1 5727066 5727598 -236936755 + MLT2A2 LTR ERVL 1 553 -1 920 154 6 0 chr1 5728287 5728462 -236935891 + (CAT)n Simple_repeat Simple_repeat 3 178 0 263 207 37 0 chr1 5728524 5728606 -236935747 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 267 185 0 19 chr1 5730182 5730236 -236934117 + MIR SINE MIR 94 146 -62 204 326 61 10 chr1 5731056 5731154 -236933199 + MIR SINE MIR 51 153 -109 291 297 79 44 chr1 5731193 5731422 -236932931 + L2 LINE L2 1816 2052 -1262 1093 197 14 113 chr1 5731424 5731794 -236932559 - MLT1A2 LTR MaLR -41 333 1 242 295 205 0 chr1 5731855 5732011 -236932342 + MER3 DNA MER1_type 2 189 -20 259 294 78 17 chr1 5732212 5732392 -236931961 + L2 LINE L2 2375 2565 -749 1261 251 99 20 chr1 5732874 5733320 -236931033 - MER89 LTR ERV1 0 559 79 404 206 41 0 chr1 5734283 5734380 -236929973 - MER89 LTR ERV1 -458 101 1 297 200 22 67 chr1 5734572 5734752 -236929601 + (TTGTG)n Simple_repeat Simple_repeat 5 176 0 360 171 40 57 chr1 5734771 5734946 -236929407 + (CTGTG)n Simple_repeat Simple_repeat 3 174 0 322 194 39 56 chr1 5735031 5735211 -236929142 + (CTGTG)n Simple_repeat Simple_repeat 3 179 0 809 246 110 75 chr1 5735943 5736426 -236927927 - MLT2B1 LTR ERVL 0 520 21 232 306 0 14 chr1 5738598 5738670 -236925683 + L2 LINE L2 3201 3271 -1 1874 124 61 164 chr1 5739399 5739876 -236924477 - MSTA LTR MaLR 0 428 1 1726 215 97 15 chr1 5740072 5740522 -236923831 - LTR53 LTR ERVL -14 505 93 2129 102 0 3 chr1 5740522 5740816 -236923537 + AluSx SINE Alu 1 293 -19 279 79 0 0 chr1 5740816 5740854 -236923499 + (TA)n Simple_repeat Simple_repeat 2 39 0 1726 215 97 15 chr1 5740854 5740867 -236923486 - LTR53 LTR ERVL -425 94 3 357 320 132 48 chr1 5740974 5741224 -236923129 + LTR16A1 LTR ERVL 187 457 0 383 301 61 37 chr1 5741241 5741404 -236922949 - MIR SINE MIR -31 231 65 439 173 13 0 chr1 5741407 5741482 -236922871 + AluJ/FLAM SINE Alu 2 77 -235 1379 169 4 4 chr1 5741582 5741847 -236922506 + AluJb SINE Alu 40 304 0 1739 219 32 50 chr1 5742085 5742271 -236922082 + MLT1C LTR MaLR 2 190 -277 2161 58 17 17 chr1 5742271 5742562 -236921791 + AluY SINE Alu 1 291 -20 1739 219 32 50 chr1 5742562 5742850 -236921503 + MLT1C LTR MaLR 190 467 0 5584 92 17 1 chr1 5742999 5743781 -236920572 - L1PB1 LINE L1 -6 6145 5352 1386 176 90 14 chr1 5744260 5744563 -236919790 - MER61B LTR ERV1 0 425 1 467 202 53 48 chr1 5744845 5745033 -236919320 - L1M4 LINE L1 -935 5211 5023 572 300 105 76 chr1 5745067 5745411 -236918942 + L1M4 LINE L1 3426 3786 -2360 2129 97 10 0 chr1 5745411 5745701 -236918652 + AluSg SINE Alu 1 293 -17 572 300 105 76 chr1 5745701 5745776 -236918577 + L1M4 LINE L1 3786 3857 -2289 227 262 65 28 chr1 5745792 5745899 -236918454 + L1M2 LINE L1 5352 5462 -838 348 285 95 34 chr1 5745921 5746100 -236918253 + L1ME3A LINE L1 5773 5962 -208 550 167 74 105 chr1 5746216 5746268 -236918085 + L1MB2 LINE L1 6013 6065 -106 1716 145 3 41 chr1 5746268 5746586 -236917767 + AluSq SINE Alu 1 306 -7 550 167 74 105 chr1 5746586 5746695 -236917658 + L1MB2 LINE L1 6065 6169 -2 25 31 0 0 chr1 5746695 5746727 -236917626 + AT_rich Low_complexity Low_complexity 1 32 0 2061 111 21 0 chr1 5747051 5747339 -236917014 + AluSx SINE Alu 1 294 -18 2268 99 0 0 chr1 5748465 5748769 -236915584 - AluSx SINE Alu -8 304 1 3455 129 30 38 chr1 5749139 5749743 -236914610 + MER4A LTR ERV1 1 599 -1 1861 221 47 10 chr1 5749799 5750284 -236914069 - MLT1D LTR MaLR -2 503 1 371 256 144 73 chr1 5750396 5750638 -236913715 - MLT1I LTR MaLR 0 409 129 2129 118 0 0 chr1 5750638 5750935 -236913418 + AluSg1 SINE Alu 1 297 -12 371 256 144 73 chr1 5750935 5751074 -236913279 - MLT1I LTR MaLR -280 129 1 427 276 0 0 chr1 5751899 5751997 -236912356 - MIR SINE MIR -59 203 106 1052 219 38 19 chr1 5752014 5752334 -236912019 + MLT1C LTR MaLR 1 326 -141 575 207 155 1 chr1 5752523 5752652 -236911701 + MLT1C LTR MaLR 347 463 -4 2151 90 3 0 chr1 5753039 5753328 -236911025 - AluSg SINE Alu -20 290 1 1226 234 141 10 chr1 5754260 5754657 -236909696 + MLT1C LTR MaLR 4 452 -15 668 247 69 18 chr1 5754873 5755107 -236909246 - MLT1C LTR MaLR -18 433 202 1282 225 109 44 chr1 5755137 5755568 -236908785 - MLT1C LTR MaLR -8 459 1 414 213 25 65 chr1 5755571 5755742 -236908611 - MLT1C LTR MaLR -346 121 7 489 216 123 43 chr1 5755898 5756060 -236908293 - MER5B DNA MER1_type -3 175 1 292 316 74 0 chr1 5756139 5756234 -236908119 - MIR SINE MIR -72 136 35 342 282 12 0 chr1 5756404 5756668 -236907685 + G-rich Low_complexity Low_complexity 1 267 0 230 263 11 0 chr1 5756679 5756854 -236907499 + G-rich Low_complexity Low_complexity 1 177 0 1331 243 82 14 chr1 5757425 5757862 -236906491 + MLT1C LTR MaLR 1 467 0 401 173 0 27 chr1 5757903 5757978 -236906375 - AluS SINE Alu -240 73 1 1475 148 4 34 chr1 5758276 5758540 -236905813 + AluJb SINE Alu 8 263 -49 515 67 33 11 chr1 5758558 5758648 -236905705 + (GGA)n Simple_repeat Simple_repeat 1 92 0 305 236 99 45 chr1 5758755 5759055 -236905298 + L1MEc LINE L1 1389 1480 -4943 * 729 263 135 16 chr1 5759045 5759634 -236904719 + L1MEc LINE L1 2018 2762 -4181 * 1953 217 39 30 chr1 5759626 5759754 -236904599 + L1M4 LINE L1 3775 3900 -2246 3010 125 7 9 chr1 5759754 5760203 -236904150 + MER83 LTR ERV1 1 448 0 1953 217 39 30 chr1 5760203 5760617 -236903736 + L1M4 LINE L1 3900 4322 -1824 1541 271 11 4 chr1 5761140 5761597 -236902756 + L1MEc LINE L1 4059 4518 -2423 1829 143 118 0 chr1 5761597 5761912 -236902441 - MER47A DNA MER2_type 0 366 15 3138 225 52 55 chr1 5761914 5762873 -236901480 + L1MEc LINE L1 4606 5662 -1384 16828 30 0 1 chr1 5762873 5765628 -236898725 + L1PA3 LINE L1 3389 6152 -3 3138 225 52 55 chr1 5765628 5766269 -236898084 + L1MEc LINE L1 5662 6303 -743 2633 229 53 48 chr1 5766268 5766540 -236897813 + L1ME2 LINE L1 4983 5252 -912 * 225 0 0 0 chr1 5766540 5766565 -236897788 + (TG)n Simple_repeat Simple_repeat 1 25 0 2633 229 53 48 chr1 5766565 5766631 -236897722 + L1ME2 LINE L1 5252 5316 -848 1490 212 123 0 chr1 5766631 5766956 -236897397 - MLT1A1 LTR MaLR 0 365 1 2633 229 53 48 chr1 5766956 5767776 -236896577 + L1ME2 LINE L1 5316 6156 -8 1306 270 68 67 chr1 5767772 5768577 -236895776 + L1ME LINE L1 3480 4283 -1863 * 1921 126 0 4 chr1 5768577 5768855 -236895498 + AluSx SINE Alu 1 277 -35 221 0 35 0 chr1 5768860 5768889 -236895464 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1306 270 68 67 chr1 5768889 5769029 -236895324 + L1ME LINE L1 4286 4432 -1714 21 57 0 0 chr1 5769037 5769072 -236895281 + AT_rich Low_complexity Low_complexity 1 35 0 871 160 43 27 chr1 5769091 5769278 -236895075 - MSTB2 LTR MaLR 0 432 243 1868 201 36 27 chr1 5769285 5769832 -236894521 - MLT2A2 LTR ERVL -8 546 1 1015 142 45 102 chr1 5769832 5770077 -236894276 - MSTB2 LTR MaLR -201 231 1 1283 256 109 40 chr1 5770086 5770703 -236893650 + L1ME LINE L1 4502 5075 -1087 1616 179 14 7 chr1 5770703 5770999 -236893354 + AluJb SINE Alu 1 298 -14 1283 256 109 40 chr1 5770999 5771306 -236893047 + L1ME LINE L1 5075 5507 -655 2794 103 0 5 chr1 5771306 5771683 -236892670 + THE1C LTR MaLR 1 375 0 1283 256 109 40 chr1 5771683 5771739 -236892614 + L1ME LINE L1 5507 5558 -604 273 240 85 39 chr1 5771901 5772030 -236892323 - MLT1J1 LTR MaLR -232 214 80 212 299 11 23 chr1 5772316 5772403 -236891950 + GA-rich Low_complexity Low_complexity 3 88 0 572 317 95 20 chr1 5772462 5773029 -236891324 + L1M4 LINE L1 5283 5897 -277 1806 197 46 3 chr1 5773291 5773641 -236890712 - MLT1A1 LTR MaLR 0 365 1 1991 226 72 36 chr1 5773657 5774219 -236890134 - MLT1A1-int LTR MaLR -14 1721 924 2267 104 57 28 chr1 5774219 5774573 -236889780 - THE1B LTR MaLR 0 364 1 1991 226 72 36 chr1 5774573 5774603 -236889750 - MLT1A1-int LTR MaLR -811 924 897 531 183 78 0 chr1 5774808 5774923 -236889430 - MLT1A1 LTR MaLR 0 365 242 219 258 245 52 chr1 5776601 5776725 -236887628 + MIR SINE MIR 8 148 -71 2224 94 0 7 chr1 5777111 5777419 -236886934 - AluY SINE Alu -5 306 1 1522 290 111 8 chr1 5777442 5778084 -236886269 - L1MC4 LINE L1 0 8042 7335 728 282 146 15 chr1 5778089 5778419 -236885934 - L1MC4 LINE L1 -754 7288 6916 242 294 55 27 chr1 5778450 5778596 -236885757 - L1MC4a LINE L1 -1241 6567 6418 505 132 0 13 chr1 5778598 5778674 -236885679 + AluJ/FLAM SINE Alu 2 76 -236 1660 204 28 26 chr1 5978676 5979064 -236685289 - MLT2C1 LTR ERVL -8 389 1 841 170 0 0 chr1 5979104 5979245 -236685108 - FLAM_C SINE Alu -2 141 1 1954 110 30 43 chr1 5979658 5979959 -236684394 + AluSx SINE Alu 1 297 -15 265 298 46 53 chr1 5980036 5980167 -236684186 - MER5A DNA MER1_type -14 175 46 885 137 82 0 chr1 5980933 5981079 -236683274 + FRAM SINE Alu 8 165 -11 363 169 0 0 chr1 5981085 5981144 -236683209 + AluJ/FLAM SINE Alu 11 69 -233 1988 147 0 6 chr1 5982565 5982879 -236681474 + AluSx SINE Alu 1 312 0 1397 179 81 4 chr1 5984058 5984331 -236680022 + AluJb SINE Alu 1 294 -18 1972 115 0 17 chr1 5984333 5984661 -236679692 + AluSq SINE Alu 1 323 0 2196 99 3 10 chr1 5984902 5985215 -236679138 + AluSx SINE Alu 1 311 -1 180 77 0 0 chr1 5985741 5985767 -236678586 + (A)n Simple_repeat Simple_repeat 1 26 0 2174 101 3 3 chr1 5985884 5986180 -236678173 - AluSq SINE Alu -15 298 3 377 370 29 0 chr1 5986201 5986339 -236678014 - L1MC4 LINE L1 -1334 6708 6567 259 284 12 12 chr1 5986361 5986442 -236677911 + MLT1L LTR MaLR 1 81 -534 476 238 57 0 chr1 5986485 5986607 -236677746 + MLT1L LTR MaLR 163 291 -324 638 281 50 15 chr1 5986647 5986762 -236677591 + MLT1L LTR MaLR 410 536 -79 1596 170 23 13 chr1 5986762 5986936 -236677417 - AluJo SINE Alu -9 303 123 183 42 0 0 chr1 5986936 5986960 -236677393 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 5986960 5987085 -236677268 - AluJo SINE Alu -189 123 1 638 281 50 15 chr1 5987085 5987168 -236677185 + MLT1L LTR MaLR 536 615 0 246 128 0 0 chr1 5988155 5988194 -236676159 + (A)n Simple_repeat Simple_repeat 1 39 0 972 90 0 0 chr1 5989619 5989752 -236674601 + AluSp SINE Alu 1 133 -180 1066 162 5 79 chr1 5990458 5990512 -236673841 + MER20 DNA MER1_type 16 72 -147 2228 118 0 0 chr1 5990512 5990816 -236673537 + AluSx SINE Alu 1 304 -8 1066 162 5 79 chr1 5990816 5990977 -236673376 + MER20 DNA MER1_type 72 215 -4 1480 164 0 82 chr1 5991870 5992052 -236672301 - AluJb SINE Alu -9 303 158 2257 99 0 3 chr1 5992052 5992354 -236671999 - AluSx SINE Alu -10 302 2 1480 164 0 82 chr1 5992354 5992501 -236671852 - AluJb SINE Alu -154 158 1 2158 94 13 3 chr1 5993229 5993538 -236670815 + AluSx SINE Alu 1 312 0 2210 81 7 29 chr1 5993550 5993859 -236670494 + AluSg SINE Alu 1 302 -8 1735 156 30 7 chr1 5994316 5994611 -236669742 + AluJo SINE Alu 1 302 -10 258 105 0 0 chr1 5994707 5994745 -236669608 + (TG)n Simple_repeat Simple_repeat 2 39 0 895 132 0 0 chr1 5994771 5994907 -236669446 + AluJb SINE Alu 1 136 -176 2207 103 3 0 chr1 5995500 5995801 -236668552 - AluSx SINE Alu -8 304 3 203 322 17 0 chr1 5996197 5996256 -236668097 + L2 LINE L2 3244 3303 -10 2087 132 0 0 chr1 5996449 5996753 -236667600 + AluY SINE Alu 1 304 -7 2184 89 3 3 chr1 5996807 5997098 -236667255 - AluSx SINE Alu -21 291 1 688 219 140 79 chr1 5997486 5997875 -236666478 + MLT1C LTR MaLR 1 426 -41 284 125 0 0 chr1 5997974 5998014 -236666339 + Alu SINE Alu 1 40 -262 1786 151 3 3 chr1 5998014 5998298 -236666055 + AluJb SINE Alu 11 294 -18 2121 99 20 3 chr1 5998601 5998895 -236665458 - AluSx SINE Alu -13 299 1 294 218 92 79 chr1 5998896 5999126 -236665227 - MLT1C LTR MaLR -165 340 99 855 123 0 0 chr1 5999422 5999544 -236664809 - AluJ SINE Alu -8 304 183 957 105 0 0 chr1 5999547 5999680 -236664673 - AluJ SINE Alu -179 133 1 1990 132 0 0 chr1 5999710 6000021 -236664332 + AluSx SINE Alu 2 312 0 2826 200 43 32 chr1 6000890 6001474 -236662879 + MLT1E LTR MaLR 1 590 -3 626 286 57 40 chr1 6001567 6001815 -236662538 + MIR SINE MIR 8 259 -3 454 183 0 24 chr1 6002035 6002111 -236662242 + FLAM_A SINE Alu 45 119 -18 2120 130 0 0 chr1 6002111 6002411 -236661942 - AluSx SINE Alu -12 300 1 1393 118 22 18 chr1 6002512 6002741 -236661612 + AluJb SINE Alu 82 311 -1 628 198 25 0 chr1 6003260 6003381 -236660972 + MER2 DNA MER2_type 2 125 -220 763 143 84 0 chr1 6003388 6003507 -236660846 - AluSg/x SINE Alu -39 271 143 2122 99 3 0 chr1 6003509 6003803 -236660550 - AluSq SINE Alu -18 295 1 531 287 51 19 chr1 6003804 6003903 -236660450 + MER2 DNA MER2_type 123 217 -128 774 167 8 0 chr1 6003903 6004035 -236660318 - FLAM_C SINE Alu 0 133 1 531 287 51 19 chr1 6004035 6004151 -236660202 + MER2 DNA MER2_type 217 345 0 2170 92 7 13 chr1 6004370 6004675 -236659678 - AluSx SINE Alu -9 303 1 2069 142 0 0 chr1 6005504 6005813 -236658540 + AluJo SINE Alu 1 309 -3 297 322 68 1 chr1 6006041 6006187 -236658166 - MIR SINE MIR -67 141 18 297 280 118 0 chr1 6006459 6006552 -236657801 + L2 LINE L2 2872 2975 -338 224 209 0 0 chr1 6006587 6006630 -236657723 + L2 LINE L2 3230 3272 0 21 0 0 0 chr1 6009155 6009176 -236655177 + GC_rich Low_complexity Low_complexity 1 21 0 1941 108 29 55 chr1 6010398 6010705 -236653648 - AluSq SINE Alu -14 299 1 276 272 93 25 chr1 6010808 6011001 -236653352 - MIR SINE MIR -31 177 2 257 0 0 29 chr1 6011100 6011134 -236653219 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 2076 104 21 0 chr1 6011911 6012200 -236652153 - AluSx SINE Alu -17 295 1 1344 150 5 0 chr1 6012383 6012596 -236651757 + AluJo SINE Alu 75 288 -24 28 29 0 0 chr1 6012602 6012637 -236651716 + AT_rich Low_complexity Low_complexity 1 35 0 653 171 8 0 chr1 6012638 6012761 -236651592 + L1MB7 LINE L1 6045 6168 -16 421 280 65 60 chr1 6013579 6013788 -236650565 - MIR SINE MIR -16 246 34 1009 133 66 0 chr1 6014040 6014206 -236650147 - AluSg/x SINE Alu -2 308 132 2114 115 0 19 chr1 6014206 6014520 -236649833 - AluSx SINE Alu -4 308 1 421 163 325 0 chr1 6014655 6014778 -236649575 - MER3 DNA MER1_type -6 203 41 2197 113 0 7 chr1 6015269 6015578 -236648775 + AluSx SINE Alu 1 307 -5 2411 246 46 43 chr1 6015855 6016564 -236647789 + L2 LINE L2 1883 2596 -718 1363 171 57 67 chr1 6016564 6016863 -236647490 - AluJb SINE Alu -16 296 1 2411 246 46 43 chr1 6016863 6016958 -236647395 + L2 LINE L2 2596 2689 -625 722 282 177 26 chr1 6016965 6017344 -236647009 + L2 LINE L2 2863 3298 -15 1250 157 14 9 chr1 6017422 6017639 -236646714 + LTR26E LTR ERV1 397 614 -8 2211 95 6 13 chr1 6018381 6018696 -236645657 + AluSq SINE Alu 1 313 0 446 33 0 16 chr1 6020061 6020122 -236644231 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1394 164 30 69 chr1 6020122 6020427 -236643926 - AluJb SINE Alu -19 293 1 817 183 15 0 chr1 6020721 6020858 -236643495 - FLAM_C SINE Alu -3 140 2 820 169 0 0 chr1 6020931 6021061 -236643292 - FLAM_C SINE Alu -1 132 3 1975 139 13 3 chr1 6021152 6021494 -236642859 + AluSx SINE Alu 1 345 0 1714 141 0 4 chr1 6021519 6021781 -236642572 + AluJb SINE Alu 34 294 -18 452 240 40 0 chr1 6023189 6023314 -236641039 + MIR3 SINE MIR 58 187 -21 200 216 0 20 chr1 6023859 6023910 -236640443 + CT-rich Low_complexity Low_complexity 2 51 0 197 65 32 0 chr1 6025117 6025148 -236639205 + (CGGG)n Simple_repeat Simple_repeat 1 32 0 436 72 29 0 chr1 6027951 6028020 -236636333 + (TCC)n Simple_repeat Simple_repeat 1 71 0 210 150 0 0 chr1 6028032 6028072 -236636281 + (CTG)n Simple_repeat Simple_repeat 3 42 0 187 31 62 0 chr1 6029106 6029138 -236635215 + A-rich Low_complexity Low_complexity 2 35 0 252 0 0 0 chr1 6029737 6029765 -236634588 + (TG)n Simple_repeat Simple_repeat 2 29 0 400 368 0 28 chr1 6030130 6030312 -236634041 - MIR3 SINE MIR -2 206 30 223 212 153 0 chr1 6030364 6030449 -236633904 + MIR3 SINE MIR 66 163 -45 1707 197 92 15 chr1 6030600 6031027 -236633326 - MLT1C LTR MaLR 0 467 1 2383 60 0 3 chr1 6031108 6031409 -236632944 - AluY SINE Alu -11 300 1 2320 79 7 0 chr1 6031494 6031798 -236632555 - AluSp SINE Alu -7 306 1 636 182 179 23 chr1 6031829 6032019 -236632334 - MIR SINE MIR -56 206 1 844 145 0 8 chr1 6032269 6032400 -236631953 + FLAM_C SINE Alu 4 133 0 2298 88 3 0 chr1 6032985 6033282 -236631071 - AluSp SINE Alu -7 306 9 184 326 0 0 chr1 6033914 6033963 -236630390 - L2 LINE L2 0 3313 3265 1989 113 38 3 chr1 6034435 6034728 -236629625 - AluSx SINE Alu -9 303 1 2162 100 17 0 chr1 6034774 6035075 -236629278 + AluSp SINE Alu 2 307 -6 279 292 67 46 chr1 6035086 6035281 -236629072 + L2 LINE L2 3114 3312 -1 1788 169 3 0 chr1 6035373 6035674 -236628679 - AluSx SINE Alu -10 302 1 207 313 27 68 chr1 6036173 6036205 -236628148 + L2 LINE L2 3132 3164 -108 1805 157 0 41 chr1 6036205 6036347 -236628006 + AluJo SINE Alu 1 147 -165 2223 89 3 7 chr1 6036347 6036649 -236627704 + AluSp SINE Alu 1 301 -12 1805 157 0 41 chr1 6036649 6036825 -236627528 + AluJo SINE Alu 147 306 -6 207 313 27 68 chr1 6036825 6036939 -236627414 + L2 LINE L2 3164 3272 0 2023 169 19 3 chr1 6036984 6037344 -236627009 - MLT1B LTR MaLR 0 390 25 329 102 20 0 chr1 6037405 6037454 -236626899 - MLT1B LTR MaLR -340 50 1 249 33 0 0 chr1 6037473 6037503 -236626850 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 492 274 62 44 chr1 6037715 6037962 -236626391 - MIR SINE MIR -12 250 1 586 184 65 30 chr1 6038219 6038366 -236625987 + MER53 DNA DNA 1 156 -33 2380 92 0 0 chr1 6038366 6038669 -236625684 + AluSx SINE Alu 1 303 -9 586 184 65 30 chr1 6038669 6038689 -236625664 + MER53 DNA DNA 156 174 -15 1220 284 28 54 chr1 6038941 6039402 -236624951 - MLT1J LTR MaLR -49 462 14 1479 178 52 0 chr1 6039454 6039724 -236624629 - AluJb SINE Alu -22 290 7 208 283 0 0 chr1 6040039 6040092 -236624261 - L2 LINE L2 -31 3241 3189 1888 143 0 10 chr1 6040708 6041002 -236623351 + AluJb SINE Alu 1 291 -21 2060 143 7 0 chr1 6041002 6041310 -236623043 + AluSg SINE Alu 1 310 0 2017 122 24 0 chr1 6041833 6042127 -236622226 + AluSx SINE Alu 1 301 -11 2025 84 3 34 chr1 6042127 6042448 -236621905 + AluSx SINE Alu 1 312 0 2155 117 3 0 chr1 6042723 6043032 -236621321 - AluSx SINE Alu -2 310 1 1912 120 68 0 chr1 6043576 6043868 -236620485 - AluSx SINE Alu 0 312 1 1687 108 88 0 chr1 6043882 6044153 -236620200 - AluJb SINE Alu 0 304 12 2477 62 0 0 chr1 6044576 6044881 -236619472 - AluY SINE Alu -6 305 1 892 151 0 7 chr1 6044882 6045028 -236619325 - AluJb SINE Alu -167 145 1 3888 165 46 23 chr1 6045040 6045504 -236618849 - L1MB4 LINE L1 -84 6096 5644 1994 89 55 28 chr1 6045504 6045795 -236618558 - AluSx SINE Alu -13 299 1 3888 165 46 23 chr1 6045795 6046233 -236618120 - L1MB4 LINE L1 -536 5644 5173 914 142 0 8 chr1 6046408 6046542 -236617811 + FLAM_C SINE Alu 1 133 0 1870 143 13 23 chr1 6047103 6047411 -236616942 + AluJb SINE Alu 1 305 -7 2135 95 0 20 chr1 6047484 6047780 -236616573 + AluSx SINE Alu 23 312 0 1833 125 71 14 chr1 6048330 6048488 -236615865 - AluSx SINE Alu 0 312 165 1893 143 3 10 chr1 6048488 6048782 -236615571 - AluSc SINE Alu -17 292 1 1833 125 71 14 chr1 6048782 6048918 -236615435 - AluSx SINE Alu -147 165 1 193 333 0 0 chr1 6048920 6048983 -236615370 + L2 LINE L2 2454 2516 -798 1783 201 45 21 chr1 6049041 6049465 -236614888 + MER74A LTR ERVL 26 459 -99 2286 94 0 3 chr1 6049465 6049572 -236614781 - AluSc SINE Alu 0 309 203 1037 82 6 22 chr1 6049572 6049755 -236614598 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2286 94 0 3 chr1 6049755 6050304 -236614049 - AluSc SINE Alu -106 203 1 475 176 19 37 chr1 6050306 6050414 -236613939 + MER74A LTR ERVL 443 548 -10 2117 128 0 0 chr1 6050415 6050720 -236613633 - AluSx SINE Alu -7 305 1 841 288 105 30 chr1 6050826 6051399 -236612954 + L2 LINE L2 2677 3294 -19 236 224 0 0 chr1 6052172 6052221 -236612132 - L2 LINE L2 -3 3269 3221 4055 165 15 82 chr1 6052343 6052566 -236611787 + L1MB8 LINE L1 4920 5156 -1022 2119 125 0 0 chr1 6052566 6052862 -236611491 + AluSq SINE Alu 1 296 -17 4055 165 15 82 chr1 6052862 6053094 -236611259 + L1MB8 LINE L1 5156 5402 -776 1630 162 0 45 chr1 6053094 6053408 -236610945 + AluJb SINE Alu 1 300 -12 4055 165 15 82 chr1 6053408 6053569 -236610784 + L1MB8 LINE L1 5402 5572 -606 2361 78 3 7 chr1 6053569 6053877 -236610476 + AluSx SINE Alu 1 307 -5 4055 165 15 82 chr1 6053877 6054020 -236610333 + L1MB8 LINE L1 5572 5723 -455 1914 127 7 23 chr1 6054020 6054319 -236610034 + AluSx SINE Alu 1 294 -18 4055 165 15 82 chr1 6054319 6054534 -236609819 + L1MB8 LINE L1 5723 5771 -407 1956 141 17 0 chr1 6054534 6054833 -236609520 + AluSx SINE Alu 1 304 -8 4055 165 15 82 chr1 6054833 6055216 -236609137 + L1MB8 LINE L1 5771 6178 0 2126 92 14 3 chr1 6055221 6055516 -236608837 + AluSx SINE Alu 1 298 -14 2037 127 0 7 chr1 6055612 6055911 -236608442 + AluSx SINE Alu 3 299 -13 1296 192 112 0 chr1 6055920 6056196 -236608157 + AluJo SINE Alu 6 312 0 524 202 54 8 chr1 6056200 6056329 -236608024 + MLT1E2 LTR MaLR 36 170 -456 826 137 0 0 chr1 6056331 6056455 -236607898 - AluSg/x SINE Alu -18 292 169 1908 106 0 0 chr1 6056455 6056710 -236607643 - AluSq SINE Alu -58 255 1 813 147 74 165 chr1 6056710 6056737 -236607616 + MLT1E2 LTR MaLR 163 191 -314 2494 65 0 0 chr1 6056737 6057047 -236607306 + AluY SINE Alu 1 310 -1 813 147 74 165 chr1 6057047 6057427 -236606926 + MLT1E2 LTR MaLR 191 505 0 1684 151 3 43 chr1 6057487 6057786 -236606567 + AluJo SINE Alu 13 299 -13 234 170 22 0 chr1 6057974 6058023 -236606330 + MIR SINE MIR 95 140 -68 2391 77 3 0 chr1 6058677 6058988 -236605365 - AluSp SINE Alu -1 312 1 1905 121 13 26 chr1 6058988 6059292 -236605061 - AluSx SINE Alu -11 301 1 2000 113 0 0 chr1 6059890 6060202 -236604151 + AluJb SINE Alu 29 340 0 316 265 191 25 chr1 6060366 6060528 -236603825 - MIR SINE MIR -9 253 65 30 58 0 14 chr1 6060862 6060906 -236603447 + GC_rich Low_complexity Low_complexity 1 45 -23 208 24 24 71 chr1 6060906 6060948 -236603405 + (CCCCCG)n Simple_repeat Simple_repeat 5 44 0 30 58 0 14 chr1 6060948 6060972 -236603381 + GC_rich Low_complexity Low_complexity 45 68 0 44 70 0 0 chr1 6061269 6061355 -236602998 + GC_rich Low_complexity Low_complexity 1 86 0 26 64 0 0 chr1 6061767 6061814 -236602539 + AT_rich Low_complexity Low_complexity 1 47 0 1689 164 0 4 chr1 6061828 6062108 -236602245 - AluJb SINE Alu -31 281 3 1834 102 8 8 chr1 6062223 6062488 -236601865 - AluSx SINE Alu -47 265 1 1908 110 16 39 chr1 6062578 6062887 -236601466 + AluSx SINE Alu 1 302 -10 463 244 306 0 chr1 6062889 6063049 -236601304 - MIR SINE MIR -6 256 48 689 221 32 100 chr1 6063359 6063431 -236600922 + MIR SINE MIR 31 106 -156 2054 117 40 0 chr1 6063431 6063731 -236600622 - AluSx SINE Alu 0 312 1 689 221 32 100 chr1 6063731 6063907 -236600446 + MIR SINE MIR 106 262 0 1539 221 192 32 chr1 6064039 6064978 -236599375 - L2 LINE L2 0 3313 2234 620 194 12 43 chr1 6064987 6065233 -236599120 + MER63 DNA MER1_type 1 915 -147 1920 138 0 0 chr1 6065233 6065524 -236598829 - AluSx SINE Alu 0 312 22 476 331 6 29 chr1 6066665 6066840 -236597513 - MIR3 SINE MIR -31 177 7 1797 122 29 11 chr1 6067587 6067898 -236596455 - AluJb SINE Alu 0 316 1 326 319 135 12 chr1 6068022 6068185 -236596168 + MIR SINE MIR 80 262 0 184 311 40 0 chr1 6068222 6068296 -236596057 + MER5A DNA MER1_type 35 111 -78 207 206 0 73 chr1 6068459 6068527 -236595826 - MER5B DNA MER1_type -115 63 1 259 271 90 71 chr1 6070175 6070330 -236594023 + MIR SINE MIR 57 214 -48 850 258 68 0 chr1 6070385 6070606 -236593747 - MIR SINE MIR -22 240 5 2112 95 7 3 chr1 6072148 6072442 -236591911 - AluSx SINE Alu -17 295 1 228 340 10 10 chr1 6074450 6074553 -236589800 + CT-rich Low_complexity Low_complexity 2 104 0 756 163 23 0 chr1 6074717 6074846 -236589507 + FLAM_A SINE Alu 1 132 -1 334 219 0 79 chr1 6076557 6076735 -236587618 + (CACCC)n Simple_repeat Simple_repeat 5 168 0 339 25 0 0 chr1 6077632 6077672 -236586681 + (TTG)n Simple_repeat Simple_repeat 2 41 0 224 292 0 14 chr1 6078189 6078261 -236586092 + MIR SINE MIR 130 200 -62 630 180 50 29 chr1 6078593 6078732 -236585621 - FLAM_A SINE Alu 0 142 1 604 167 48 8 chr1 6078769 6078895 -236585458 - L1MB7 LINE L1 -19 6165 6035 511 268 73 0 chr1 6079667 6079831 -236584522 + MER104 DNA MER2_type 1 176 -4 531 304 86 45 chr1 6080081 6080272 -236584081 - MIR SINE MIR -6 256 50 1948 122 11 0 chr1 6080272 6080598 -236583755 + AluSx SINE Alu 1 329 0 531 304 86 45 chr1 6080598 6080647 -236583706 - MIR SINE MIR -212 50 4 2528 207 48 11 chr1 6080884 6081453 -236582900 - L1MB8 LINE L1 0 6178 5589 1930 151 0 0 chr1 6081463 6081780 -236582573 - AluJo SINE Alu 0 317 1 240 299 0 58 chr1 6081852 6081939 -236582414 + Charlie8 DNA MER1_type 127 208 -2209 614 288 19 28 chr1 6082167 6082382 -236581971 + MIR SINE MIR 12 224 -38 264 280 87 29 chr1 6083157 6083328 -236581025 - L1MEd LINE L1 -5058 1061 875 1592 140 55 49 chr1 6083328 6083635 -236580718 - AluJb SINE Alu -3 309 1 264 280 87 29 chr1 6083635 6083670 -236580683 - L1MEd LINE L1 -5244 875 843 181 200 25 0 chr1 6083924 6083964 -236580389 - L2 LINE L2 -252 3020 2980 292 213 20 80 chr1 6084333 6084483 -236579870 + (TTG)n Simple_repeat Simple_repeat 2 142 0 232 256 45 51 chr1 6084556 6084732 -236579621 + (TTG)n Simple_repeat Simple_repeat 2 176 0 275 211 50 67 chr1 6084807 6084987 -236579366 + (TTG)n Simple_repeat Simple_repeat 2 178 0 215 160 60 20 chr1 6085004 6085104 -236579249 + (TTG)n Simple_repeat Simple_repeat 2 105 0 2331 69 13 3 chr1 6085182 6085486 -236578867 - AluY SINE Alu -4 307 1 225 211 38 53 chr1 6085631 6085764 -236578589 + (TTATG)n Simple_repeat Simple_repeat 2 132 0 331 163 42 105 chr1 6085894 6086084 -236578269 + (TTG)n Simple_repeat Simple_repeat 2 179 0 387 185 52 58 chr1 6086116 6086289 -236578064 + (TTG)n Simple_repeat Simple_repeat 2 173 0 304 225 33 71 chr1 6086318 6086500 -236577853 + (TTG)n Simple_repeat Simple_repeat 2 176 0 220 193 61 83 chr1 6086531 6086712 -236577641 + (TTGTG)n Simple_repeat Simple_repeat 2 178 0 * 396 181 44 72 chr1 6086579 6086946 -236577407 + (TTG)n Simple_repeat Simple_repeat 1 356 0 361 327 168 13 chr1 6087011 6087631 -236576722 + L2 LINE L2 2288 3017 -296 284 200 122 11 chr1 6087759 6087849 -236576504 - MIR SINE MIR -96 166 67 327 256 144 24 chr1 6089008 6089133 -236575220 - MIR SINE MIR -16 246 107 218 286 60 65 chr1 6091398 6091566 -236572787 - L2 LINE L2 -182 3090 2924 898 115 0 0 chr1 6091870 6091992 -236572361 - FLAM_C SINE Alu -21 122 1 2025 108 17 0 chr1 6093023 6093318 -236571035 - AluSx SINE Alu -12 300 1 296 319 113 11 chr1 6093977 6094162 -236570191 + MER112 DNA MER1_type 3 206 -54 1809 163 14 0 chr1 6094170 6094465 -236569888 + AluJo SINE Alu 12 310 -2 2242 70 28 0 chr1 6097146 6097432 -236566921 - AluSx SINE Alu -18 294 1 380 298 8 0 chr1 6098483 6098607 -236565746 + MLT1K LTR MaLR 148 272 -316 180 383 148 9 chr1 6099285 6099400 -236564953 + L2 LINE L2 3142 3272 0 25 31 0 0 chr1 6100050 6100082 -236564271 + AT_rich Low_complexity Low_complexity 1 32 0 248 252 75 100 chr1 6100242 6100452 -236563901 - HAL1b LINE L1 -164 1184 970 2123 106 0 3 chr1 6100452 6100745 -236563608 + AluSx SINE Alu 1 292 -20 248 252 75 100 chr1 6100745 6100901 -236563452 - HAL1b LINE L1 -378 970 826 2032 122 10 19 chr1 6100901 6101213 -236563140 - AluSx SINE Alu -3 309 1 248 252 75 100 chr1 6101213 6101246 -236563107 - HAL1b LINE L1 -522 826 794 249 264 81 0 chr1 6101944 6102031 -236562322 - MIR SINE MIR -61 147 52 2266 94 0 3 chr1 6102582 6102880 -236561473 + AluSx SINE Alu 1 297 -15 34 55 0 0 chr1 6102916 6102971 -236561382 + AT_rich Low_complexity Low_complexity 1 55 0 2136 123 32 59 chr1 6103279 6103328 -236561025 - THE1B LTR MaLR 0 364 315 1943 107 3 31 chr1 6103328 6103515 -236560838 - AluSx SINE Alu 0 316 139 2264 73 3 10 chr1 6103515 6103815 -236560538 - AluY SINE Alu -13 298 1 1943 107 3 31 chr1 6103815 6103951 -236560402 - AluSx SINE Alu -177 139 1 2136 123 32 59 chr1 6103951 6104274 -236560079 - THE1B LTR MaLR -49 315 1 452 243 6 105 chr1 6104358 6104539 -236559814 - MLT1K LTR MaLR 0 588 426 907 199 21 16 chr1 6104563 6104749 -236559604 + MER53 DNA DNA 3 189 0 375 119 0 0 chr1 6105970 6106037 -236558316 + (GA)n Simple_repeat Simple_repeat 1 67 0 180 0 0 0 chr1 6106456 6106476 -236557877 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 262 173 12 12 chr1 6106566 6106647 -236557706 + C-rich Low_complexity Low_complexity 3 83 0 323 250 113 8 chr1 6107073 6107197 -236557156 + MIR SINE MIR 16 152 -110 349 335 67 11 chr1 6107603 6107782 -236556571 - L2 LINE L2 -13 3259 3071 295 276 29 9 chr1 6107893 6107998 -236556355 + MIR3 SINE MIR 81 187 -21 515 186 0 17 chr1 6108646 6108764 -236555589 + CT-rich Low_complexity Low_complexity 1 116 0 1296 171 121 14 chr1 6109209 6109489 -236554864 + AluJb SINE Alu 1 310 -2 1753 147 65 73 chr1 6110053 6110421 -236553932 + MLT1A1 LTR MaLR 1 365 0 450 231 42 88 chr1 6110421 6110637 -236553716 - HAL1 LINE L1 -22 2485 2280 896 186 54 15 chr1 6110637 6110841 -236553512 + MIR SINE MIR 51 262 0 586 257 140 23 chr1 6110880 6111187 -236553166 - HAL1 LINE L1 -291 2216 1874 1617 83 41 0 chr1 6111187 6111405 -236552948 - AluSg SINE Alu -83 227 1 480 242 109 0 chr1 6112375 6112503 -236551850 + MLT1H LTR MaLR 408 549 0 314 311 196 5 chr1 6112675 6112884 -236551469 - L2 LINE L2 -477 2837 2589 1324 181 116 18 chr1 6112895 6113232 -236551121 - MLT1C LTR MaLR -92 375 6 646 295 72 0 chr1 6113626 6113819 -236550534 + MIR SINE MIR 50 256 -6 2014 133 0 3 chr1 6113997 6114291 -236550062 + AluSx SINE Alu 1 293 -19 228 281 0 0 chr1 6114415 6114472 -236549881 + L2 LINE L2 3214 3270 -2 250 319 119 38 chr1 6114781 6114966 -236549387 + L2 LINE L2 3114 3313 0 29 28 0 0 chr1 6115033 6115069 -236549284 + AT_rich Low_complexity Low_complexity 1 36 0 783 178 0 0 chr1 6115509 6115627 -236548726 + AluJb SINE Alu 1 118 -194 430 210 0 0 chr1 6115934 6116015 -236548338 - MIR SINE MIR -122 140 60 1552 120 0 4 chr1 6117148 6117373 -236546980 - AluSc SINE Alu -12 297 74 2362 74 3 3 chr1 6117373 6117683 -236546670 - AluY SINE Alu 0 311 1 971 187 0 65 chr1 6117690 6117920 -236546433 - AluJo SINE Alu -97 215 1 34 0 0 0 chr1 6118923 6118957 -236545396 + GC_rich Low_complexity Low_complexity 1 34 0 240 35 0 0 chr1 6118995 6119024 -236545329 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr1 6119146 6119176 -236545177 + GC_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr1 6119196 6119221 -236545132 + GC_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr1 6119244 6119286 -236545067 + GC_rich Low_complexity Low_complexity 1 42 0 226 281 16 16 chr1 6119318 6119446 -236544907 + G-rich Low_complexity Low_complexity 4 131 0 21 107 0 0 chr1 6119498 6119582 -236544771 + GC_rich Low_complexity Low_complexity 1 84 0 21 57 0 0 chr1 6119721 6119756 -236544597 + GC_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr1 6119802 6119838 -236544515 + GC_rich Low_complexity Low_complexity 1 36 0 273 259 0 0 chr1 6120053 6120200 -236544153 + (TG)n Simple_repeat Simple_repeat 2 148 0 438 176 0 0 chr1 6120227 6120346 -236544007 + (TG)n Simple_repeat Simple_repeat 2 120 0 369 230 0 0 chr1 6120403 6120581 -236543772 + (TG)n Simple_repeat Simple_repeat 1 178 0 369 102 0 0 chr1 6121390 6121449 -236542904 + (TG)n Simple_repeat Simple_repeat 1 59 0 331 329 153 0 chr1 6122397 6122567 -236541786 - MIR SINE MIR -39 223 28 205 315 0 0 chr1 6122718 6122772 -236541581 + (CA)n Simple_repeat Simple_repeat 1 54 0 243 188 0 0 chr1 6122790 6122838 -236541515 + (CA)n Simple_repeat Simple_repeat 2 49 0 11922 158 50 38 chr1 6123666 6124568 -236539785 + ERVL-B3 LTR ERVL 959 1849 -3915 744 94 0 0 chr1 6124568 6124674 -236539679 + (TGAA)n Simple_repeat Simple_repeat 4 109 0 11922 158 50 38 chr1 6124674 6125555 -236538798 + ERVL-B3 LTR ERVL 1849 2718 -3046 1695 153 0 59 chr1 6125555 6125667 -236538686 + AluJo SINE Alu 1 118 -194 189 0 0 0 chr1 6125667 6125688 -236538665 + (TC)n Simple_repeat Simple_repeat 2 22 0 2079 104 3 3 chr1 6125688 6125975 -236538378 - AluSq SINE Alu -24 289 3 1695 153 0 59 chr1 6125975 6126009 -236538344 + AluJo SINE Alu 116 301 -11 1133 151 0 6 chr1 6126009 6126181 -236538172 + AluJb SINE Alu 131 301 -11 11922 158 50 38 chr1 6126181 6127406 -236536947 + ERVL-B3 LTR ERVL 2718 4016 -1748 1812 121 39 39 chr1 6127406 6127711 -236536642 + AluJo SINE Alu 1 305 -7 11922 158 50 38 chr1 6127711 6128290 -236536063 + ERVL-B3 LTR ERVL 4016 4587 -1177 822 124 11 68 chr1 6128315 6128492 -236535861 + Ricksha DNA DNA 246 412 -1634 1110 182 120 8 chr1 6128591 6128849 -236535504 + MLT2B3 LTR ERVL 75 361 -193 6180 158 20 15 chr1 6128849 6130016 -236534337 + ERVL-B3 LTR ERVL 4593 5764 0 827 161 97 51 chr1 6130016 6130076 -236534277 + Ricksha DNA DNA 343 412 -842 2135 166 55 36 chr1 6130176 6130647 -236533706 + MLT2B3 LTR ERVL 75 554 0 1112 150 75 0 chr1 6130967 6131154 -236533199 - AluJo SINE Alu -107 205 5 214 281 132 83 chr1 6131595 6131716 -236532637 + L2 LINE L2 3146 3272 0 290 287 215 15 chr1 6131926 6132121 -236532232 - L2 LINE L2 0 3272 3039 467 262 152 42 chr1 6132682 6132873 -236531480 - MIR SINE MIR -40 222 11 2221 128 0 0 chr1 6133114 6133426 -236530927 - AluSx SINE Alu 0 312 1 1625 195 24 0 chr1 6133429 6133716 -236530637 - L1MB5 LINE L1 0 6174 5881 331 325 97 0 chr1 6134811 6134925 -236529428 - MIR SINE MIR -13 249 125 303 49 0 0 chr1 6135460 6135501 -236528852 + (GA)n Simple_repeat Simple_repeat 1 41 0 300 27 0 0 chr1 6135500 6135537 -236528816 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 1261 155 0 5 chr1 6135537 6135731 -236528622 - AluJo SINE Alu -33 279 87 2057 128 3 0 chr1 6135759 6136047 -236528306 + AluSx SINE Alu 1 289 -23 2030 135 0 10 chr1 6136609 6136913 -236527440 + AluJb SINE Alu 1 301 -11 21 0 0 0 chr1 6137359 6137380 -236526973 + AT_rich Low_complexity Low_complexity 1 21 0 255 198 55 44 chr1 6137584 6137675 -236526678 - L1MC5 LINE L1 -35 7926 7835 1331 122 19 158 chr1 6138214 6138525 -236525828 - AluJo SINE Alu -44 268 1 279 349 23 16 chr1 6138605 6138734 -236525619 - L1MB8 LINE L1 0 6178 6049 21 36 0 0 chr1 6138937 6138965 -236525388 + AT_rich Low_complexity Low_complexity 1 28 0 646 251 58 72 chr1 6139172 6139315 -236525038 - MIR SINE MIR -11 251 108 2047 93 0 11 chr1 6139315 6139595 -236524758 + AluSq SINE Alu 3 279 -34 646 251 58 72 chr1 6139595 6139608 -236524745 - MIR SINE MIR -154 108 96 240 35 0 0 chr1 6139608 6139637 -236524716 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 646 251 58 72 chr1 6139637 6139702 -236524651 - MIR SINE MIR -166 96 32 205 269 0 0 chr1 6139968 6140020 -236524333 + L2 LINE L2 3221 3272 0 2268 113 0 0 chr1 6140092 6140402 -236523951 + AluSx SINE Alu 1 310 -2 266 376 42 30 chr1 6141548 6141713 -236522640 - MIR SINE MIR 0 262 96 234 0 0 0 chr1 6142065 6142091 -236522262 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 239 234 0 0 chr1 6142577 6142624 -236521729 + (TG)n Simple_repeat Simple_repeat 2 48 0 273 276 95 0 chr1 6143007 6143112 -236521241 + MIR SINE MIR 45 159 -103 251 273 22 65 chr1 6143384 6143523 -236520830 - L2 LINE L2 -205 3067 2935 1420 170 50 47 chr1 6143681 6143981 -236520372 - AluJb SINE Alu -11 301 1 21 0 0 0 chr1 6144034 6144055 -236520298 + AT_rich Low_complexity Low_complexity 1 21 0 359 252 165 8 chr1 6144712 6144839 -236519514 + MIR SINE MIR 41 187 -75 255 328 115 16 chr1 6144940 6145062 -236519291 - L2 LINE L2 -43 3229 3096 1894 108 46 29 chr1 6145106 6145412 -236518941 + AluSx SINE Alu 1 311 -1 218 57 0 75 chr1 6145587 6145640 -236518713 + (TCC)n Simple_repeat Simple_repeat 1 49 0 367 241 24 0 chr1 6146385 6146468 -236517885 - L2 LINE L2 -5 3308 3224 188 379 0 0 chr1 6147685 6147751 -236516602 - L2 LINE L2 -9 3263 3198 341 267 114 8 chr1 6147809 6147940 -236516413 - MER104 DNA Tc2 -3 177 33 537 284 129 10 chr1 6148388 6148589 -236515764 - MIR SINE MIR -14 248 24 866 287 122 26 chr1 6151766 6152191 -236512162 - L2 LINE L2 -3 3310 2845 302 248 23 53 chr1 6153433 6153566 -236510787 + Charlie7 DNA MER1_type 2437 2565 -47 1061 211 72 0 chr1 6153897 6154106 -236510247 - MER58A DNA MER1_type 0 224 1 428 206 28 9 chr1 6154533 6154640 -236509713 + MER103 DNA DNA 17 125 -41 273 356 22 37 chr1 6154709 6154844 -236509509 - MIR3 SINE MIR -41 167 35 626 195 86 104 chr1 6154977 6155198 -236509155 - MER20 DNA MER1_type -2 217 1 247 218 0 36 chr1 6155478 6155533 -236508820 + (TGGG)n Simple_repeat Simple_repeat 3 55 0 1446 122 22 0 chr1 6155699 6155921 -236508432 + AluSg/x SINE Alu 86 312 0 2031 85 32 21 chr1 6156384 6156695 -236507658 + AluSq SINE Alu 1 314 0 515 170 28 19 chr1 6156908 6157014 -236507339 - L1MB3 LINE L1 0 6183 6077 586 157 25 33 chr1 6157020 6157141 -236507212 - L1MB3 LINE L1 -588 5595 5476 464 339 107 61 chr1 6157307 6157517 -236506836 - L1ME3 LINE L1 -294 5868 5669 2240 106 3 3 chr1 6157517 6157829 -236506524 - AluSq SINE Alu -1 312 1 464 339 107 61 chr1 6157829 6158143 -236506210 - L1ME3 LINE L1 -493 5669 5320 876 125 0 22 chr1 6158266 6158402 -236505951 + FLAM_C SINE Alu 1 133 0 2372 92 0 0 chr1 6159524 6159829 -236504524 - AluSx SINE Alu -7 305 1 2250 106 0 0 chr1 6160282 6160584 -236503769 - AluSx SINE Alu -10 302 1 1099 82 0 0 chr1 6160584 6160719 -236503634 - AluSq/x SINE Alu -178 135 1 2848 158 16 60 chr1 6160719 6161339 -236503014 - L1MB3 LINE L1 -33 6150 5558 2214 117 0 0 chr1 6161418 6161716 -236502637 + AluSx SINE Alu 1 298 -14 1760 149 30 27 chr1 6161725 6162026 -236502327 + AluJb SINE Alu 1 302 -10 2293 95 7 0 chr1 6162418 6162724 -236501629 - AluSp SINE Alu -5 308 1 256 276 0 40 chr1 6166224 6166300 -236498053 - MER5A DNA MER1_type -75 114 42 247 250 25 25 chr1 6167573 6167653 -236496700 + L2 LINE L2 3155 3234 -79 2379 74 3 0 chr1 6167901 6168200 -236496153 - AluSp SINE Alu -13 300 1 2195 159 24 58 chr1 6169273 6169725 -236494628 - L1MB5 LINE L1 0 6174 5738 2457 56 0 10 chr1 6169981 6170286 -236494067 - AluY SINE Alu -9 302 1 729 207 103 23 chr1 6170386 6170560 -236493793 - MER5A DNA MER1_type 0 189 2 813 165 0 8 chr1 6173234 6173367 -236490986 + FLAM_C SINE Alu 1 132 -1 320 330 160 53 chr1 6173591 6173891 -236490462 - L1MC4a LINE L1 -6 6115 5784 2353 75 0 0 chr1 6174142 6174436 -236489917 - AluSx SINE Alu -11 301 8 381 131 0 0 chr1 6175136 6175197 -236489156 + (TG)n Simple_repeat Simple_repeat 2 62 0 444 201 17 17 chr1 6176136 6176315 -236488038 + (CA)n Simple_repeat Simple_repeat 2 180 0 247 274 16 0 chr1 6176764 6176826 -236487527 + (TG)n Simple_repeat Simple_repeat 1 63 0 622 164 0 0 chr1 6177279 6177383 -236486970 + MER58A DNA MER1_type 3 106 -1 342 209 0 0 chr1 6177383 6177441 -236486912 + MER58A DNA MER1_type 167 224 0 597 220 162 0 chr1 6178597 6178770 -236485583 + MER58A DNA MER1_type 12 212 -12 245 217 0 43 chr1 6178833 6178902 -236485451 + C-rich Low_complexity Low_complexity 1 66 0 217 293 0 27 chr1 6179000 6179075 -236485278 + C-rich Low_complexity Low_complexity 2 74 0 2147 97 7 0 chr1 6179836 6180134 -236484219 + AluSq SINE Alu 1 300 -13 1934 75 47 0 chr1 6180759 6181013 -236483340 + AluSx SINE Alu 31 296 -16 508 185 32 0 chr1 6182987 6183144 -236481209 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 227 156 67 0 chr1 6183161 6183206 -236481147 + (TGGG)n Simple_repeat Simple_repeat 3 50 0 1167 178 0 3 chr1 6183214 6183572 -236480781 + (TGGA)n Simple_repeat Simple_repeat 3 358 0 2331 97 0 0 chr1 6185620 6185920 -236478433 + AluSg SINE Alu 1 300 -10 883 296 259 10 chr1 6185922 6186618 -236477735 - L2 LINE L2 -619 2695 1827 1197 257 97 12 chr1 6186626 6187050 -236477303 - MLT1C LTR MaLR -1 466 7 1011 96 0 15 chr1 6187366 6187501 -236476852 - FLAM_C SINE Alu 0 133 1 207 100 0 0 chr1 6188379 6188409 -236475944 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 194 241 35 17 chr1 6189712 6189770 -236474583 + MIR SINE MIR 88 146 -62 2095 125 3 3 chr1 6189902 6190198 -236474155 - AluSx SINE Alu -16 296 1 278 365 19 0 chr1 6190576 6190683 -236473670 - MIR3 SINE MIR -26 182 74 2021 110 0 46 chr1 6190988 6191355 -236472998 - AluSx SINE Alu 0 312 1 1518 156 130 7 chr1 6191355 6191615 -236472738 - AluJo SINE Alu -6 296 1 716 189 86 0 chr1 6191682 6191857 -236472496 - L1MB8 LINE L1 0 6178 5989 405 300 73 13 chr1 6192661 6192773 -236471580 + MIR SINE MIR 2 127 -135 2218 104 7 0 chr1 6192773 6193072 -236471281 - AluSx SINE Alu -11 301 1 405 300 73 13 chr1 6193072 6193109 -236471244 + MIR SINE MIR 127 160 -102 582 217 12 103 chr1 6193222 6193430 -236470923 + MIR SINE MIR 10 193 -62 192 77 0 0 chr1 6195353 6195379 -236468974 + (TA)n Simple_repeat Simple_repeat 2 27 0 453 295 36 24 chr1 6196623 6196789 -236467564 + MER5A DNA MER1_type 21 188 -1 2219 69 0 14 chr1 6197122 6197412 -236466941 + AluSc SINE Alu 4 289 -20 1632 174 27 7 chr1 6199791 6200084 -236464269 - L1MB5 LINE L1 -2 6172 5874 409 255 51 51 chr1 6200126 6200283 -236464070 + MIR SINE MIR 105 261 -1 1020 238 114 76 chr1 6200530 6200691 -236463662 - MLT1D LTR MaLR 0 505 352 1919 137 0 64 chr1 6200691 6201020 -236463333 + AluSx SINE Alu 1 308 -4 1020 238 114 76 chr1 6201020 6201318 -236463035 - MLT1D LTR MaLR -153 352 28 2630 102 24 0 chr1 6201318 6201728 -236462625 + MER83 LTR ERV1 1 420 -28 205 346 0 26 chr1 6203925 6204003 -236460350 + MIR SINE MIR 117 192 -70 2096 120 3 0 chr1 6204057 6204357 -236459996 - AluSq SINE Alu -12 301 1 300 137 0 0 chr1 6204885 6204936 -236459417 + (TCC)n Simple_repeat Simple_repeat 2 52 0 1613 164 72 10 chr1 6204936 6205228 -236459125 - AluSg SINE Alu 0 310 1 34 0 0 0 chr1 6205233 6205267 -236459086 + AT_rich Low_complexity Low_complexity 1 34 0 1851 138 3 3 chr1 6205315 6205765 -236458588 - AluJb SINE Alu 0 450 1 211 147 0 0 chr1 6206049 6206083 -236458270 - MIR SINE MIR -28 234 201 2034 119 3 28 chr1 6206322 6206642 -236457711 - AluSx SINE Alu 0 312 1 1646 140 37 34 chr1 6206643 6206965 -236457388 - THE1B LTR MaLR -41 323 1 407 243 6 105 chr1 6207049 6207230 -236457123 - MLT1K LTR MaLR 0 588 426 905 199 21 16 chr1 6207254 6207440 -236456913 + MER53 DNA DNA 3 189 0 300 127 0 0 chr1 6208661 6208716 -236455637 + (GA)n Simple_repeat Simple_repeat 1 55 0 192 286 79 0 chr1 6209512 6209609 -236454744 + MIR SINE MIR 64 165 -86 453 267 215 0 chr1 6209650 6209822 -236454531 - MIR SINE MIR -50 212 4 236 210 12 111 chr1 6210017 6210080 -236454273 + L2 LINE L2 3239 3294 -19 2041 131 0 7 chr1 6210080 6210377 -236453976 + AluSx SINE Alu 1 295 -17 236 210 12 111 chr1 6210377 6210394 -236453959 + L2 LINE L2 3294 3311 -2 2202 97 0 3 chr1 6210489 6210779 -236453574 + AluSq SINE Alu 1 289 -24 262 343 73 7 chr1 6211655 6211792 -236452561 - MIR SINE MIR -15 247 102 258 160 0 0 chr1 6212209 6212259 -236452094 + AluJb SINE Alu 87 136 -166 1917 136 10 3 chr1 6212259 6212553 -236451800 + AluJb SINE Alu 1 296 -16 194 241 35 17 chr1 6212685 6212743 -236451610 - MIR SINE MIR -62 146 88 207 100 0 0 chr1 6214046 6214076 -236450277 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1012 96 0 15 chr1 6214954 6215123 -236449230 + FLAM_C SINE Alu 1 167 0 1181 259 97 12 chr1 6215424 6215848 -236448505 + MLT1C LTR MaLR 7 466 -1 508 283 337 4 chr1 6215856 6216322 -236448031 + L2 LINE L2 1827 2447 -867 813 165 0 8 chr1 6217268 6217401 -236446952 + FLAM_C SINE Alu 1 132 -1 320 330 160 53 chr1 6217625 6217925 -236446428 - L1MC4a LINE L1 -6 6115 5784 2109 63 0 0 chr1 6218216 6218471 -236445882 - AluY SINE Alu -56 255 1 742 112 0 8 chr1 6218496 6218621 -236445732 - MER4A LTR ERV1 -540 124 1 385 156 0 0 chr1 6218621 6218684 -236445669 - MER4E LTR ERV1 -716 63 1 271 267 58 0 chr1 6218840 6218926 -236445427 + MIR SINE MIR 61 151 -57 509 277 45 28 chr1 6219322 6219499 -236444854 + MIR SINE MIR 13 192 -70 2195 111 0 16 chr1 6219649 6219964 -236444389 - AluSx SINE Alu -2 310 1 1955 151 17 0 chr1 6220710 6221009 -236443344 + AluSx SINE Alu 1 304 -8 238 214 0 119 chr1 6221620 6221704 -236442649 - MER91 DNA MER1_type 0 140 67 2092 138 0 3 chr1 6222199 6222510 -236441843 + AluSx SINE Alu 1 310 -2 188 180 0 80 chr1 6223577 6223627 -236440726 - L2 LINE L2 -3 3310 3265 425 130 29 0 chr1 6223679 6223748 -236440605 + AluJ/FLAM SINE Alu 6 76 -236 1971 133 3 3 chr1 6424122 6424415 -236239938 + AluSx SINE Alu 1 293 -19 2244 120 8 6 chr1 6425879 6426237 -236238116 + THE1B LTR MaLR 1 359 -5 1717 181 7 0 chr1 6426325 6426617 -236237736 + AluJb SINE Alu 1 294 -18 1467 166 61 32 chr1 6427570 6427914 -236236439 + MLT1A1 LTR MaLR 1 354 -11 950 263 106 64 chr1 6427929 6428317 -236236036 + MLT1K LTR MaLR 4 415 -61 1935 144 0 10 chr1 6428317 6428615 -236235738 - AluJo SINE Alu -5 307 13 950 263 106 64 chr1 6428615 6428678 -236235675 + MLT1K LTR MaLR 415 474 -2 463 199 130 15 chr1 6428967 6429098 -236235255 + MER112 DNA MER1_type 2 147 -113 202 339 51 34 chr1 6429110 6429228 -236235125 - MIR3 SINE MIR -40 168 49 916 175 12 18 chr1 6430431 6430593 -236233760 - AluJo/FRAM SINE Alu -14 298 136 2003 156 0 0 chr1 6430593 6430894 -236233459 - AluJb SINE Alu -11 301 1 1885 124 4 4 chr1 6431282 6431555 -236232798 + AluJb SINE Alu 17 289 -23 2278 93 3 0 chr1 6431759 6432059 -236232294 + AluSg SINE Alu 1 301 -9 44 46 0 0 chr1 6433369 6433434 -236230919 + GC_rich Low_complexity Low_complexity 1 65 0 200 214 18 0 chr1 6434783 6434839 -236229514 + (TG)n Simple_repeat Simple_repeat 2 58 0 1647 200 0 3 chr1 6436933 6437233 -236227120 + AluJb SINE Alu 1 299 -13 2361 82 7 3 chr1 6437387 6437693 -236226660 + AluSq SINE Alu 1 307 -6 1982 123 0 0 chr1 6438374 6438690 -236225663 - AluSq SINE Alu 0 316 1 212 200 0 62 chr1 6438908 6438973 -236225380 + MIR3 SINE MIR 110 170 -38 244 329 98 18 chr1 6439599 6439763 -236224590 + MIR3 SINE MIR 26 202 -6 422 18 18 0 chr1 6439890 6439945 -236224408 + (CA)n Simple_repeat Simple_repeat 2 57 0 274 296 74 9 chr1 6440586 6440694 -236223659 - MIR SINE MIR -78 130 16 291 225 0 2 chr1 6442615 6442679 -236221674 + MIR SINE MIR 85 140 -68 297 159 76 53 chr1 6442934 6443066 -236221287 - LTR33 LTR ERVL -365 156 22 355 307 60 13 chr1 6443311 6443461 -236220892 + L2 LINE L2 3116 3272 0 2047 129 7 0 chr1 6443915 6444218 -236220135 - AluSx SINE Alu -3 309 5 270 319 69 8 chr1 6444735 6444908 -236219445 + MIR SINE MIR 30 222 -40 234 357 13 58 chr1 6445305 6445459 -236218894 - L2 LINE L2 0 3313 3167 2015 112 18 0 chr1 6445998 6446314 -236218039 + AluSx SINE Alu 1 312 0 695 318 57 48 chr1 6446341 6447004 -236217349 - L2 LINE L2 -4 3309 2624 334 271 199 0 chr1 6447174 6447325 -236217028 - L2 LINE L2 -685 2629 2449 240 277 213 0 chr1 6448456 6448550 -236215803 - L2 LINE L2 -2 3311 3198 22 0 0 0 chr1 6452080 6452102 -236212251 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 6452424 6452446 -236211907 + (CAG)n Simple_repeat Simple_repeat 1 22 0 292 240 170 10 chr1 6452724 6452824 -236211529 + L2 LINE L2 3154 3269 -3 195 270 60 20 chr1 6452882 6452982 -236211371 - L2 LINE L2 -221 3051 2948 2343 64 0 35 chr1 6454452 6454765 -236209588 + AluY SINE Alu 1 302 -9 845 240 77 56 chr1 6455929 6456321 -236208032 - MLT1C LTR MaLR -9 458 59 1450 347 93 20 chr1 6457665 6458912 -236205441 - L2 LINE L2 -1 3312 1965 206 321 95 0 chr1 6458910 6459019 -236205334 - L2 LINE L2 -322 2991 2873 * 2181 109 20 0 chr1 6459574 6459878 -236204475 - AluSx SINE Alu -2 310 1 2120 116 0 16 chr1 6460715 6461018 -236203335 + AluSq SINE Alu 1 298 -15 2098 110 7 17 chr1 6461027 6461328 -236203025 + AluJb SINE Alu 1 298 -14 264 308 165 0 chr1 6461400 6461533 -236202820 - MIR3 SINE MIR -51 157 3 2217 90 0 17 chr1 6461615 6461915 -236202438 + AluSq SINE Alu 5 299 -14 214 275 50 12 chr1 6462502 6462582 -236201771 - MIR SINE MIR -174 88 6 560 336 152 15 chr1 6462666 6463266 -236201087 - L2 LINE L2 -2 3270 2585 189 74 0 0 chr1 6463475 6463502 -236200851 + (GA)n Simple_repeat Simple_repeat 2 28 0 231 291 107 0 chr1 6463585 6463688 -236200665 + L2 LINE L2 3158 3271 -1 354 98 0 0 chr1 6463688 6463739 -236200614 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 216 149 0 0 chr1 6464234 6464281 -236200072 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 2180 131 50 34 chr1 6464802 6465160 -236199193 - THE1B LTR MaLR 0 364 1 1390 224 82 10 chr1 6465230 6465622 -236198731 - MER77 LTR ERV1 -7 598 179 308 188 0 31 chr1 6465802 6465866 -236198487 - MER77 LTR ERV1 -490 115 54 2112 113 7 3 chr1 6467968 6468277 -236196076 - AluSg SINE Alu 0 310 1 23 0 0 0 chr1 6468279 6468302 -236196051 + AT_rich Low_complexity Low_complexity 1 23 0 356 319 125 37 chr1 6469031 6469247 -236195106 - MIR SINE MIR -19 243 9 236 296 23 23 chr1 6469657 6469745 -236194608 - MLT1H LTR MaLR -8 541 454 1526 130 18 0 chr1 6469963 6470186 -236194167 + MER30 DNA MER1_type 4 230 0 320 229 38 61 chr1 6470191 6470322 -236194031 - MIR3 SINE MIR -51 157 30 434 167 78 0 chr1 6470894 6470984 -236193369 - L1MB8 LINE L1 -7 6171 6075 1150 176 90 61 chr1 6472066 6472257 -236192096 - AluJb SINE Alu -9 303 99 1891 128 29 0 chr1 6472257 6472551 -236191802 + AluSq SINE Alu 1 302 0 1150 176 90 61 chr1 6472551 6472636 -236191717 - AluJb SINE Alu -213 99 18 483 212 62 0 chr1 6472636 6472749 -236191604 + MIR SINE MIR 45 164 -98 277 153 176 0 chr1 6473065 6473196 -236191157 - AluSg/x SINE Alu 0 300 147 2404 169 25 20 chr1 6473296 6474243 -236190110 - L1MB8 LINE L1 -255 5923 4864 1009 220 118 58 chr1 6474400 6474782 -236189571 - MLT1I LTR MaLR -2 407 3 509 184 0 0 chr1 6474887 6474974 -236189379 + AluJb SINE Alu 210 296 -16 246 372 0 0 chr1 6475081 6475167 -236189186 + MIR SINE MIR 56 141 -121 2010 131 13 29 chr1 6475344 6475650 -236188703 - AluJb SINE Alu -11 301 1 198 0 0 0 chr1 6476262 6476284 -236188069 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 192 226 0 65 chr1 6476479 6476541 -236187812 - L2 LINE L2 -8 3264 3207 624 190 114 16 chr1 6477104 6477288 -236187065 - HAL1 LINE L1 -651 1856 1655 647 293 111 91 chr1 6477312 6477698 -236186655 + HAL1 LINE L1 142 535 -1972 232 253 41 75 chr1 6477702 6477848 -236186505 - HAL1 LINE L1 -379 2128 1988 253 253 23 11 chr1 6477882 6477969 -236186384 - MIR SINE MIR -2 260 173 2744 207 16 0 chr1 6478503 6479048 -236185305 + L1MA8 LINE L1 5620 6173 -118 448 200 36 9 chr1 6479104 6479214 -236185139 + L1MA8 LINE L1 6177 6289 -2 1932 133 66 3 chr1 6479219 6479505 -236184848 + AluJb SINE Alu 1 304 -8 383 319 0 9 chr1 6479680 6479796 -236184557 - L2 LINE L2 -2 3270 3156 190 284 15 15 chr1 6479895 6479962 -236184391 + L2 LINE L2 3186 3252 -20 2025 125 3 3 chr1 6480310 6480599 -236183754 - AluSx SINE Alu -10 302 14 2228 121 3 0 chr1 6482125 6482431 -236181922 - AluSx SINE Alu 0 312 6 233 173 269 0 chr1 6482845 6482897 -236181456 - L2 LINE L2 -57 3256 3191 499 298 129 0 chr1 6482988 6483213 -236181140 + MIR SINE MIR 9 262 0 406 117 0 0 chr1 6483480 6483540 -236180813 - Alu SINE Alu -9 301 242 1004 102 0 0 chr1 6483540 6483667 -236180686 - AluSq/x SINE Alu -183 129 3 787 139 0 31 chr1 6484557 6484686 -236179667 + FLAM_C SINE Alu 2 126 -7 3229 200 141 93 chr1 6484693 6485251 -236179102 + L1MC3 LINE L1 6500 7030 -755 308 286 24 0 chr1 6485251 6485335 -236179018 + MLT1F1 LTR MaLR 35 120 -447 3229 200 141 93 chr1 6485335 6485575 -236178778 + L1MC3 LINE L1 7030 7257 -528 2160 107 3 27 chr1 6485575 6485874 -236178479 - AluSx SINE Alu -20 292 1 3229 200 141 93 chr1 6485874 6486215 -236178138 + L1MC3 LINE L1 7257 7782 -3 2289 73 45 0 chr1 6486306 6486593 -236177760 + AluY SINE Alu 1 300 -11 456 200 119 31 chr1 6486598 6486773 -236177580 - MIR SINE MIR -60 202 13 738 177 152 0 chr1 6487419 6487583 -236176770 + MER5A DNA MER1_type 1 189 0 2657 47 0 0 chr1 6488877 6489177 -236175176 - AluY SINE Alu -11 300 1 246 182 141 81 chr1 6489245 6489344 -236175009 + L2 LINE L2 3209 3313 0 2191 113 13 10 chr1 6490870 6491171 -236173182 - AluSx SINE Alu -10 302 1 578 262 14 7 chr1 6491438 6491583 -236172770 + MIR SINE MIR 107 252 -10 415 224 27 61 chr1 6491882 6492029 -236172324 - MIR SINE MIR -86 176 35 209 273 198 17 chr1 6492047 6492219 -236172134 + L2 LINE L2 2838 3040 -273 2140 108 3 11 chr1 6492370 6492657 -236171696 + AluSx SINE Alu 1 285 -27 189 0 0 0 chr1 6492664 6492685 -236171668 + (TC)n Simple_repeat Simple_repeat 2 22 0 258 130 14 29 chr1 6492685 6492754 -236171599 + (TA)n Simple_repeat Simple_repeat 2 69 0 2261 126 0 0 chr1 6493047 6493356 -236170997 + AluSg SINE Alu 1 309 -1 1545 158 68 32 chr1 6493359 6493637 -236170716 + AluJb SINE Alu 1 288 -24 22 35 0 0 chr1 6493831 6493860 -236170493 + AT_rich Low_complexity Low_complexity 1 29 0 1932 159 0 25 chr1 6494667 6494981 -236169372 + AluJb SINE Alu 1 306 -6 2213 104 7 0 chr1 6495705 6496002 -236168351 - AluSx SINE Alu -13 299 1 840 119 8 2 chr1 6496971 6497228 -236167125 + AluSx SINE Alu 1 307 -2 1979 136 7 16 chr1 6497520 6497830 -236166523 - AluJb SINE Alu -5 307 1 875 131 46 0 chr1 6497830 6497960 -236166393 - AluJo SINE Alu -176 136 1 2224 130 33 28 chr1 6501233 6501594 -236162759 - THE1B LTR MaLR -1 363 1 592 65 26 0 chr1 6501613 6501690 -236162663 - THE1B LTR MaLR -285 79 1 618 89 0 0 chr1 6501709 6501788 -236162565 - THE1B LTR MaLR -285 79 1 621 76 0 0 chr1 6501807 6501886 -236162467 - THE1B LTR MaLR -285 79 1 848 241 46 9 chr1 6501945 6502161 -236162192 - MER58A DNA MER1_type 0 224 1 331 172 0 0 chr1 6502446 6502504 -236161849 + Charlie5 DNA MER1_type 51 108 -2504 2494 55 3 0 chr1 6503037 6503330 -236161023 + AluY SINE Alu 1 294 -17 1691 113 0 17 chr1 6503368 6503608 -236160745 + AluSq SINE Alu 1 236 -77 633 112 0 0 chr1 6503608 6503691 -236160662 - AluY SINE Alu -227 84 2 25 0 0 0 chr1 6503700 6503725 -236160628 + AT_rich Low_complexity Low_complexity 1 25 0 202 270 0 34 chr1 6503759 6503848 -236160505 + A-rich Low_complexity Low_complexity 5 90 0 205 216 0 0 chr1 6503868 6503905 -236160448 + (TA)n Simple_repeat Simple_repeat 1 37 0 206 164 15 45 chr1 6504112 6504179 -236160174 + (TA)n Simple_repeat Simple_repeat 1 65 0 1734 136 0 79 chr1 6504593 6504909 -236159444 - AluSx SINE Alu -21 291 1 25 31 0 0 chr1 6504910 6504942 -236159411 + AT_rich Low_complexity Low_complexity 1 32 0 235 132 0 0 chr1 6505005 6505043 -236159310 - L1MB7 LINE L1 -9 6175 6138 1032 269 70 18 chr1 6505070 6505420 -236158933 - L1MB8 LINE L1 -1 6177 5808 2603 64 0 3 chr1 6505570 6505882 -236158471 - AluY SINE Alu 0 311 1 2376 102 0 0 chr1 6505884 6506187 -236158166 - AluSx SINE Alu -9 303 1 203 254 0 18 chr1 6506521 6506576 -236157777 + L3 LINE CR1 1517 1570 -7 2330 97 3 3 chr1 6506999 6507298 -236157055 + AluSx SINE Alu 1 299 -13 782 196 0 0 chr1 6508042 6508180 -236156173 - L1MB4 LINE L1 -7 6173 6036 2216 112 3 10 chr1 6508389 6508692 -236155661 - AluSx SINE Alu -11 301 1 2384 88 3 0 chr1 6509662 6509967 -236154386 - AluSx SINE Alu -6 306 1 315 0 0 0 chr1 6509994 6510029 -236154324 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 487 205 116 9 chr1 6510039 6510151 -236154202 + FLAM_A SINE Alu 1 124 -9 294 249 31 0 chr1 6510685 6510773 -236153580 - MIR SINE MIR -65 143 101 1629 102 16 20 chr1 6513458 6513702 -236150651 - MER75B DNA T2_type 0 243 1 2463 91 0 3 chr1 6516799 6517108 -236147245 + AluSx SINE Alu 1 308 -4 1841 160 4 0 chr1 6518322 6518631 -236145722 + AluJo SINE Alu 1 310 0 22 56 0 0 chr1 6518653 6518689 -236145664 + AT_rich Low_complexity Low_complexity 1 36 0 1120 221 18 9 chr1 6518947 6519164 -236145189 - MER58A DNA MER1_type 0 224 6 1856 92 114 7 chr1 6519240 6519511 -236144842 + AluSg SINE Alu 1 300 -10 2629 46 0 0 chr1 6520409 6520711 -236143642 + AluY SINE Alu 1 302 -9 764 145 17 0 chr1 6520787 6520930 -236143423 + AluJb SINE Alu 164 308 0 1416 183 8 12 chr1 6523638 6523889 -236140464 + AluJo SINE Alu 15 264 -48 463 331 97 6 chr1 6524783 6524958 -236139395 + MIR SINE MIR 17 207 -55 24 0 0 0 chr1 6525957 6525981 -236138372 + AT_rich Low_complexity Low_complexity 1 24 0 2357 94 0 3 chr1 6526432 6526729 -236137624 + AluSx SINE Alu 1 296 -16 2509 57 3 3 chr1 6527501 6527801 -236136552 + AluY SINE Alu 1 300 -11 300 111 0 0 chr1 6528332 6528377 -236135976 + (CA)n Simple_repeat Simple_repeat 2 46 0 207 0 0 0 chr1 6528808 6528831 -236135522 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1 6529708 6529731 -236134622 + AT_rich Low_complexity Low_complexity 1 23 0 213 279 22 29 chr1 6532924 6533060 -236131293 + (CCCCG)n Simple_repeat Simple_repeat 4 138 0 313 275 176 6 chr1 6533820 6534002 -236130351 + MIR SINE MIR 2 214 -48 2288 102 3 3 chr1 6534362 6534667 -236129686 + AluSq SINE Alu 1 305 -8 4293 181 55 8 chr1 6536148 6537094 -236127259 - L1MB5 LINE L1 0 6174 5151 2229 110 3 3 chr1 6537094 6537404 -236126949 - AluSq SINE Alu -3 310 1 4293 181 55 8 chr1 6537404 6537857 -236126496 - L1MB5 LINE L1 -1023 5151 4721 2685 201 42 8 chr1 6537858 6538471 -236125882 - L1MB5 LINE L1 -1576 4570 3937 2080 116 0 14 chr1 6538572 6538866 -236125487 - AluSx SINE Alu -22 290 1 1659 134 119 11 chr1 6540036 6540305 -236124048 + AluJo SINE Alu 1 298 -14 614 231 139 24 chr1 6540472 6540617 -236123736 + MIR SINE MIR 5 132 -130 189 0 0 0 chr1 6540617 6540638 -236123715 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 614 231 139 24 chr1 6540638 6540669 -236123684 + MIR SINE MIR 132 158 -104 2543 71 0 0 chr1 6540669 6540980 -236123373 + AluY SINE Alu 1 311 0 614 231 139 24 chr1 6540980 6541010 -236123343 + MIR SINE MIR 158 236 -26 210 305 57 9 chr1 6543718 6543823 -236120530 + L2 LINE L2 2772 2881 -433 256 271 146 58 chr1 6544074 6544403 -236119950 + L2 LINE L2 2953 3310 -3 1711 161 28 14 chr1 6544789 6545080 -236119273 + AluSx SINE Alu 1 295 -17 437 250 33 33 chr1 6545408 6545588 -236118765 + C-rich Low_complexity Low_complexity 1 180 0 23 0 0 0 chr1 6545877 6545900 -236118453 + GC_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr1 6545992 6546042 -236118311 + GC_rich Low_complexity Low_complexity 1 50 0 210 248 0 40 chr1 6546073 6546174 -236118179 + (CGGG)n Simple_repeat Simple_repeat 4 100 0 2491 45 3 0 chr1 6547730 6548017 -236116336 + AluY SINE Alu 1 288 -23 2149 116 3 16 chr1 6550377 6550680 -236113673 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr1 6550890 6550914 -236113439 + AT_rich Low_complexity Low_complexity 1 24 0 537 184 43 43 chr1 6550961 6550996 -236113357 - L1MB2 LINE L1 -5 6166 6132 2425 116 11 27 chr1 6550996 6551366 -236112987 + THE1B LTR MaLR 1 364 0 537 184 43 43 chr1 6551366 6551471 -236112882 - L1MB2 LINE L1 -38 6133 6026 200 360 47 0 chr1 6551727 6551813 -236112540 - L2 LINE L2 -5 3267 3178 2655 91 19 16 chr1 6551927 6552301 -236112052 - THE1C LTR MaLR 0 375 1 10315 112 39 9 chr1 6552301 6553835 -236110518 - THE1C-int LTR MaLR 0 1580 1 2634 77 41 6 chr1 6553835 6554197 -236110156 - THE1C LTR MaLR 0 375 1 2211 106 0 20 chr1 6555962 6556265 -236108088 + AluSc SINE Alu 1 297 -12 23 33 0 0 chr1 6556403 6556433 -236107920 + AT_rich Low_complexity Low_complexity 1 30 0 251 233 0 22 chr1 6556602 6556692 -236107661 + (TTATA)n Simple_repeat Simple_repeat 3 90 0 653 270 101 50 chr1 6556987 6557431 -236106922 - L2 LINE L2 -10 3303 2837 351 294 8 84 chr1 6557500 6557738 -236106615 - L1MC5 LINE L1 -33 7928 7709 1111 245 21 24 chr1 6557768 6558058 -236106295 - L1MC4 LINE L1 -1051 6991 6703 2158 123 13 0 chr1 6558070 6558370 -236105983 - AluSx SINE Alu -8 304 1 239 235 37 0 chr1 6558402 6558483 -236105870 - L2 LINE L2 -626 2688 2605 310 29 0 0 chr1 6558538 6558573 -236105780 - U2 snRNA snRNA -153 35 1 720 282 115 27 chr1 6558573 6558903 -236105450 - L2 LINE L2 -769 2545 2187 340 308 121 26 chr1 6558906 6559108 -236105245 - L2 LINE L2 -1791 1523 1287 2465 87 0 3 chr1 6559108 6559417 -236104936 + AluSx SINE Alu 1 308 -4 340 308 121 26 chr1 6559417 6559487 -236104866 - L2 LINE L2 -2027 1287 1225 2428 68 7 23 chr1 6561079 6561386 -236102967 + AluSq SINE Alu 2 303 -10 1826 156 3 29 chr1 6561515 6561823 -236102530 - AluJo SINE Alu -2 310 11 2035 93 57 4 chr1 6561972 6562252 -236102101 - AluSx SINE Alu -16 296 2 1252 122 0 0 chr1 6562435 6562607 -236101746 + AluSg/x SINE Alu 136 307 -5 23 0 0 0 chr1 6563099 6563122 -236101231 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 6563695 6563720 -236100633 + AT_rich Low_complexity Low_complexity 1 25 0 2292 109 0 7 chr1 6564017 6564320 -236100033 - AluSx SINE Alu -11 301 1 462 293 27 14 chr1 6564465 6564612 -236099741 - MER5A DNA MER1_type -23 166 18 2147 118 3 0 chr1 6565062 6565351 -236099002 + AluSx SINE Alu 1 290 -22 250 249 135 21 chr1 6565884 6566077 -236098276 + L1ME4a LINE L1 5842 6056 -65 1819 159 3 10 chr1 6566154 6566455 -236097898 - AluJb SINE Alu -11 301 3 2202 116 3 0 chr1 6566629 6566923 -236097430 - AluSx SINE Alu -17 295 1 312 333 76 8 chr1 6567746 6567878 -236096475 - L2 LINE L2 -2 3311 3171 1981 131 0 27 chr1 6568272 6568569 -236095784 + AluJo SINE Alu 12 300 -12 233 160 0 20 chr1 6568570 6568620 -236095733 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 576 285 21 11 chr1 6568796 6568982 -236095371 - L2 LINE L2 0 3313 3126 339 294 87 33 chr1 6569270 6569454 -236094899 + MIR SINE MIR 7 200 -62 181 264 36 55 chr1 6569507 6569617 -236094736 + MIR SINE MIR 2 109 -153 2448 100 0 0 chr1 6569706 6570015 -236094338 + AluSx SINE Alu 1 309 -3 194 244 0 0 chr1 6570021 6570066 -236094287 + L2 LINE L2 3216 3260 -12 206 283 0 0 chr1 6572476 6572522 -236091831 + (TAA)n Simple_repeat Simple_repeat 3 48 0 1220 218 26 95 chr1 6573172 6573562 -236090791 - MLT1A1 LTR MaLR -2 363 1 2652 49 3 0 chr1 6574100 6574405 -236089948 + AluY SINE Alu 1 306 -5 306 304 73 16 chr1 6575042 6575233 -236089120 + L1MD3 LINE L1 12 213 -6210 1955 245 195 37 chr1 6575274 6576771 -236087582 + L1MD3 LINE L1 994 2908 -4033 637 179 80 0 chr1 6576771 6576883 -236087470 + FLAM_A SINE Alu 1 121 -12 1955 245 195 37 chr1 6576883 6577310 -236087043 + L1MD3 LINE L1 2908 3266 -3675 1229 241 104 14 chr1 6577311 6577459 -236086894 + L1MD3 LINE L1 3578 3711 -3230 2307 86 3 25 chr1 6577459 6577773 -236086580 + AluY SINE Alu 1 307 -4 1229 241 104 14 chr1 6577773 6578064 -236086289 + L1MD3 LINE L1 3711 4057 -2884 279 222 56 0 chr1 6578052 6578124 -236086229 + L1MD3 LINE L1 5904 5979 -962 * 280 150 0 0 chr1 6578129 6578169 -236086184 + 5S rRNA rRNA 3 42 -79 2793 231 175 37 chr1 6578169 6579488 -236084865 + L1MD3 LINE L1 5972 6194 -747 1241 206 164 62 chr1 6579508 6580084 -236084269 + L1MC4a LINE L1 7159 7808 0 340 340 107 0 chr1 6580201 6580398 -236083955 + L2 LINE L2 1954 2171 -1143 712 239 49 22 chr1 6580410 6580594 -236083759 - MER3 DNA MER1_type -14 195 7 332 232 54 97 chr1 6580780 6580965 -236083388 - L1MC4a LINE L1 -1862 5946 5770 1704 113 4 9 chr1 6581435 6581666 -236082687 - MER30 DNA MER1_type 0 230 1 321 245 11 32 chr1 6582599 6582693 -236081660 + MIR SINE MIR 171 262 0 256 320 10 0 chr1 6583047 6583144 -236081209 - MIR SINE MIR -6 256 159 268 355 0 50 chr1 6583693 6583834 -236080519 - MIR SINE MIR -110 152 19 835 176 15 0 chr1 6583879 6584010 -236080343 + FLAM_C SINE Alu 1 133 -10 2304 85 10 0 chr1 6584014 6584308 -236080045 - AluSx SINE Alu -15 297 1 2630 242 107 30 chr1 6584337 6584532 -236079821 + L1MEc LINE L1 2089 2268 -3947 1515 193 3 47 chr1 6584532 6584833 -236079520 + AluJo SINE Alu 1 288 -24 2630 242 107 30 chr1 6584833 6585116 -236079237 + L1MEc LINE L1 2268 2528 -3687 2386 73 3 23 chr1 6585116 6585417 -236078936 + AluSp SINE Alu 1 295 -18 2630 242 107 30 chr1 6585417 6586120 -236078233 + L1MEc LINE L1 2528 3308 -2907 611 201 67 7 chr1 6586116 6586265 -236078088 - L1M4 LINE L1 -1359 4787 4630 * 1672 222 36 13 chr1 6586271 6586658 -236077695 - L1MEc LINE L1 -5531 865 470 590 204 107 51 chr1 6586647 6586863 -236077490 - L1MEc LINE L1 -6129 267 40 * 235 100 0 0 chr1 6587038 6587078 -236077275 + L1MA4 LINE L1 6258 6297 -3 369 308 61 20 chr1 6587105 6587352 -236077001 + L1MC4a LINE L1 5715 5971 -1837 2240 129 3 0 chr1 6587365 6587676 -236076677 + AluSq SINE Alu 1 312 -1 807 107 25 16 chr1 6587677 6587798 -236076555 + AluSc SINE Alu 132 253 -56 532 286 67 0 chr1 6590380 6590558 -236073795 + MIR SINE MIR 2 191 -71 402 287 50 0 chr1 6590593 6590694 -236073659 + L2 LINE L2 3202 3307 -6 2770 193 120 18 chr1 6590872 6591537 -236072816 - MER44D DNA MER2_type 0 605 1 1318 222 33 3 chr1 6592057 6592359 -236071994 - L1ME1 LINE L1 -7 6228 5918 9201 211 93 22 chr1 6592366 6594122 -236070231 - L1ME1 LINE L1 -1123 5092 3462 2153 128 0 3 chr1 6594122 6594428 -236069925 - AluSg SINE Alu -5 305 1 9201 211 93 22 chr1 6594428 6594593 -236069760 - L1ME1 LINE L1 -2753 3462 3310 1038 189 6 0 chr1 6594593 6594757 -236069596 - FRAM SINE Alu -1 165 1 9201 211 93 22 chr1 6594757 6595669 -236068684 - L1ME1 LINE L1 -2905 3310 2043 2107 121 13 3 chr1 6595669 6595975 -236068378 - AluSx SINE Alu -3 309 1 9201 211 93 22 chr1 6595975 6596189 -236068164 - L1ME1 LINE L1 -4172 2043 1846 1759 171 7 14 chr1 6596207 6596513 -236067840 - AluJo SINE Alu 0 304 1 27 73 0 0 chr1 6596534 6596589 -236067764 + AT_rich Low_complexity Low_complexity 1 55 0 345 361 145 7 chr1 6596698 6597160 -236067193 - L2 LINE L2 -1763 1551 1026 193 262 85 43 chr1 6597226 6597367 -236066986 - L2 LINE L2 -2445 869 723 1538 109 0 0 chr1 6597744 6597946 -236066407 - AluSg/x SINE Alu -3 309 108 2100 115 7 3 chr1 6597946 6598234 -236066119 - AluSx SINE Alu -23 289 1 261 299 118 35 chr1 6599000 6599144 -236065209 - MIR SINE MIR -74 188 33 1506 150 45 8 chr1 6599547 6599794 -236064559 + AluJo SINE Alu 1 256 -56 1554 163 45 7 chr1 6599945 6600160 -236064193 - L1MB3 LINE L1 -3 6180 5950 2040 120 32 0 chr1 6600160 6600443 -236063910 - AluSx SINE Alu -8 304 13 1554 163 45 7 chr1 6600443 6600515 -236063838 - L1MB3 LINE L1 -233 5950 5882 8762 152 51 29 chr1 6600528 6602076 -236062277 - L1M4 LINE L1 -3826 2556 1044 1893 155 34 0 chr1 6602076 6602373 -236061980 - AluJo SINE Alu -5 307 1 1710 157 52 0 chr1 6602373 6602659 -236061694 - AluJo SINE Alu -6 306 5 8762 152 51 29 chr1 6602659 6602776 -236061577 - L1M4 LINE L1 -5338 1044 931 1661 96 13 22 chr1 6602776 6603006 -236061347 + MER30 DNA MER1_type 1 228 -2 8762 152 51 29 chr1 6603006 6603144 -236061209 - L1M4 LINE L1 -5451 931 711 1662 160 65 7 chr1 6603147 6603454 -236060899 - L1M4 LINE L1 -6047 337 13 1467 156 67 15 chr1 6603663 6603933 -236060420 - MER7A DNA MER2_type -64 282 1 2160 118 3 0 chr1 6603976 6604272 -236060081 + AluSg SINE Alu 1 297 -13 207 196 0 0 chr1 6605785 6605831 -236058522 + T-rich Low_complexity Low_complexity 1 46 0 365 100 0 0 chr1 6607141 6607191 -236057162 - MER85 DNA T2_type 0 139 90 641 284 48 22 chr1 6607355 6607584 -236056769 - MIR SINE MIR 0 262 28 2416 63 10 3 chr1 6607843 6608145 -236056208 - AluY SINE Alu -7 304 1 1724 188 10 0 chr1 6608779 6609111 -236055242 - AluSx SINE Alu 0 335 1 1892 129 37 0 chr1 6609922 6610214 -236054139 + AluJb SINE Alu 1 302 0 253 68 45 0 chr1 6610245 6610289 -236054064 + (TATTG)n Simple_repeat Simple_repeat 2 47 0 1852 138 14 0 chr1 6610290 6610572 -236053781 - AluSx SINE Alu -26 286 1 349 281 170 7 chr1 6610633 6610786 -236053567 - MER5A DNA MER1_type 0 189 12 2325 71 14 0 chr1 6610983 6611266 -236053087 - AluSq SINE Alu -26 287 1 2320 101 0 0 chr1 6611726 6612024 -236052329 - AluSx SINE Alu -13 299 2 386 267 82 20 chr1 6612096 6612242 -236052111 - MIR SINE MIR -3 259 105 290 284 157 41 chr1 6615480 6615677 -236048676 + L2 LINE L2 2531 2750 -564 1709 128 115 35 chr1 6615703 6615819 -236048534 + AluJb SINE Alu 1 106 -206 2415 92 0 0 chr1 6615819 6616125 -236048228 + AluSg SINE Alu 1 306 -4 1709 128 115 35 chr1 6616125 6616296 -236048057 + AluJb SINE Alu 106 311 -1 266 247 43 21 chr1 6616313 6616406 -236047947 + L1M4 LINE L1 5029 5123 -1023 1110 126 57 77 chr1 6616409 6616603 -236047750 + L1MA8 LINE L1 6040 6236 -55 231 36 0 0 chr1 6616603 6616631 -236047722 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2292 105 0 0 chr1 6616634 6616929 -236047424 + AluSq SINE Alu 1 295 -18 1110 126 57 77 chr1 6616929 6616976 -236047377 + L1MA8 LINE L1 6238 6280 -11 349 169 60 12 chr1 6616969 6617052 -236047301 + L1M4 LINE L1 5114 5200 -946 * 1880 119 0 0 chr1 6617062 6617322 -236047031 + AluSq SINE Alu 6 265 -48 1204 179 9 0 chr1 6617353 6617438 -236046915 - AluJo SINE Alu -92 220 137 1470 191 28 21 chr1 6617438 6617755 -236046598 - AluJb SINE Alu 0 319 1 1204 179 9 0 chr1 6617755 6617886 -236046467 - AluJo SINE Alu -175 137 1 213 122 0 49 chr1 6617914 6617955 -236046398 + L2 LINE L2 3275 3313 0 267 289 125 39 chr1 6617985 6618290 -236046063 - L2 LINE L2 -63 3250 2920 2040 118 0 0 chr1 6618534 6618813 -236045540 + AluSx SINE Alu 1 279 -33 470 45 0 15 chr1 6618834 6618900 -236045453 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 1866 163 10 0 chr1 6619332 6619626 -236044727 + AluJb SINE Alu 7 303 -9 1973 134 3 24 chr1 6620340 6620638 -236043715 - AluSx SINE Alu -20 292 1 239 137 0 39 chr1 6620991 6621042 -236043311 + (TTTAA)n Simple_repeat Simple_repeat 2 50 0 336 219 62 39 chr1 6621207 6621335 -236043018 - L2 LINE L2 -260 3053 2923 1846 151 0 4 chr1 6621483 6621762 -236042591 + AluJb SINE Alu 13 290 -22 826 266 242 3 chr1 6621832 6622317 -236042036 - L2 LINE L2 -2 3311 2706 911 192 6 6 chr1 6622317 6622499 -236041854 - AluJo SINE Alu -4 308 127 2116 136 3 0 chr1 6622516 6622817 -236041536 + AluSx SINE Alu 1 302 -10 630 295 74 8 chr1 6622833 6623091 -236041262 - L2 LINE L2 -755 2559 2285 601 273 33 0 chr1 6623093 6623276 -236041077 - L2 LINE L2 -1415 1899 1711 206 175 53 0 chr1 6623377 6623434 -236040919 - MIR SINE MIR -166 96 37 2145 74 7 42 chr1 6623671 6623980 -236040373 - AluSx SINE Alu -14 298 1 2053 119 50 74 chr1 6624094 6624168 -236040185 - MSTB1 LTR MaLR 0 432 358 631 77 0 0 chr1 6624168 6624246 -236040107 + MADE1 DNA Mariner 1 78 -2 2053 119 50 74 chr1 6624246 6624574 -236039779 - MSTB1 LTR MaLR -74 358 40 923 222 108 90 chr1 6624589 6624734 -236039619 + L2 LINE L2 2929 3070 -243 1299 13 0 0 chr1 6624734 6624883 -236039470 + (TATTG)n Simple_repeat Simple_repeat 2 150 0 2297 64 3 0 chr1 6624883 6625166 -236039187 - AluSp SINE Alu -29 284 1 923 222 108 90 chr1 6625166 6625397 -236038956 + L2 LINE L2 3069 3313 0 407 203 134 80 chr1 6625492 6625679 -236038674 - MLT1F1 LTR MaLR -5 562 366 833 141 36 123 chr1 6625869 6626037 -236038316 - MLT1B LTR MaLR -7 383 237 1851 239 80 15 chr1 6626037 6626634 -236037719 + LTR48B LTR ERV1 5 640 -4 833 141 36 123 chr1 6626634 6626685 -236037668 - MLT1B LTR MaLR -153 237 183 1137 136 61 48 chr1 6627255 6627411 -236036942 - MLT1B LTR MaLR -159 231 70 1644 164 20 10 chr1 6627411 6627709 -236036644 + AluJo SINE Alu 1 301 -11 1137 136 61 48 chr1 6627709 6627780 -236036573 - MLT1B LTR MaLR -320 70 1 2124 120 0 0 chr1 6628616 6628925 -236035428 - AluSq SINE Alu -4 309 1 1617 191 15 61 chr1 6629022 6629350 -236035003 + MLT1B LTR MaLR 1 309 -81 1999 109 3 0 chr1 6629350 6629656 -236034697 + AluSx SINE Alu 1 307 0 1617 191 15 61 chr1 6629656 6629735 -236034618 + MLT1B LTR MaLR 309 390 0 1603 155 129 35 chr1 6630493 6630835 -236033518 + MLT1A2 LTR MaLR 1 374 0 191 263 121 30 chr1 6630881 6630980 -236033373 - MIR SINE MIR -56 152 45 1843 172 50 34 chr1 6631857 6632241 -236032112 + MLT1B LTR MaLR 1 390 0 1621 219 119 30 chr1 6632554 6633051 -236031302 - MER90 LTR ERV1 0 614 74 13088 124 18 25 chr1 6633282 6633775 -236030578 + Tigger1 DNA MER2_type 4 499 -1919 2449 55 3 7 chr1 6633775 6634085 -236030268 + AluSc SINE Alu 1 309 0 13088 124 18 25 chr1 6634085 6635680 -236028673 + Tigger1 DNA MER2_type 499 2077 -341 3600 185 100 3 chr1 6635730 6636450 -236027903 + L1M2b LINE L1 2 791 -6418 2051 133 39 47 chr1 6636450 6636818 -236027535 + THE1C LTR MaLR 1 384 -44 2460 64 0 0 chr1 6636818 6637129 -236027224 - AluY SINE Alu 0 311 1 2051 133 39 47 chr1 6637129 6637174 -236027179 + THE1C LTR MaLR 384 428 0 873 285 169 24 chr1 6637178 6637683 -236026670 + L1M2b LINE L1 1111 1608 -5601 6652 186 198 46 chr1 6637687 6638605 -236025748 + L1M2b LINE L1 947 1725 -5484 2152 108 10 3 chr1 6638605 6638912 -236025441 + AluSc SINE Alu 1 309 0 6652 186 198 46 chr1 6638912 6639348 -236025005 + L1M2b LINE L1 1725 2094 -5115 2305 88 0 0 chr1 6639348 6639642 -236024711 + AluSg SINE Alu 1 294 -16 6652 186 198 46 chr1 6639642 6640350 -236024003 + L1M2b LINE L1 2094 3249 -3960 642 193 0 0 chr1 6640355 6640464 -236023889 + FLAM_A SINE Alu 18 126 -16 15623 157 33 26 chr1 6640468 6641214 -236023139 + L1MDa LINE L1 2571 3310 -3387 1758 174 0 0 chr1 6641214 6641515 -236022838 + AluSx SINE Alu 1 301 0 15623 157 33 26 chr1 6641515 6641742 -236022611 + L1MDa LINE L1 3310 3534 -3163 1685 157 0 20 chr1 6641742 6642036 -236022317 + AluJo SINE Alu 13 300 -12 15623 157 33 26 chr1 6642036 6643810 -236020543 + L1MDa LINE L1 3534 5368 -1329 1573 189 0 0 chr1 6643810 6644106 -236020247 + AluJo SINE Alu 3 298 -14 15623 157 33 26 chr1 6644106 6645435 -236018918 + L1MDa LINE L1 5368 6686 -11 1145 139 414 0 chr1 6645446 6645598 -236018755 + Tigger1 DNA MER2_type 2074 2162 -256 1584 94 115 0 chr1 6645598 6645833 -236018520 - AluSp SINE Alu -15 298 37 1145 139 414 0 chr1 6645833 6645924 -236018429 + Tigger1 DNA MER2_type 2162 2418 0 203 217 188 29 chr1 6645924 6645993 -236018360 + L2 LINE L2 3227 3306 -7 2014 137 0 23 chr1 6646058 6646364 -236017989 - AluJb SINE Alu -13 299 1 191 179 24 36 chr1 6646445 6646529 -236017824 + (TCCA)n Simple_repeat Simple_repeat 4 86 0 775 150 29 0 chr1 6646542 6646715 -236017638 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 991 129 11 0 chr1 6646742 6646920 -236017433 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 229 309 32 16 chr1 6647335 6647458 -236016895 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 216 312 13 52 chr1 6647534 6647688 -236016665 + (CGGGG)n Simple_repeat Simple_repeat 1 148 0 * 224 118 0 59 chr1 6647642 6647693 -236016660 + (TGGGGG)n Simple_repeat Simple_repeat 5 52 0 2146 90 33 0 chr1 6648526 6648826 -236015527 + AluSg SINE Alu 1 310 0 1424 138 59 45 chr1 6649244 6649534 -236014819 + AluJb SINE Alu 12 305 -7 256 311 261 23 chr1 6650323 6650629 -236013724 + L3 LINE CR1 941 1319 -258 * 477 277 48 32 chr1 6650615 6650803 -236013550 + MIR SINE MIR 28 218 -44 1697 166 0 57 chr1 6650897 6651228 -236013125 + AluJb SINE Alu 1 312 0 1573 111 11 73 chr1 6651278 6651539 -236012814 + AluSx SINE Alu 1 245 -67 2159 82 0 3 chr1 6651540 6651832 -236012521 + AluY SINE Alu 1 291 -20 459 108 0 0 chr1 6651832 6651897 -236012456 + AluSx SINE Alu 232 296 -14 413 210 59 25 chr1 6652219 6652338 -236012015 + L1ME2 LINE L1 5590 5712 -409 853 182 0 24 chr1 6652403 6652568 -236011785 + AluJo SINE Alu 39 199 -113 1629 206 157 40 chr1 6652597 6653052 -236011301 + L1MA8 LINE L1 5590 6146 -145 1590 110 0 0 chr1 6653052 6653355 -236010998 + AluSx SINE Alu 54 356 0 1629 206 157 40 chr1 6653355 6653519 -236010834 + L1MA8 LINE L1 6146 6289 -2 556 229 54 34 chr1 6653538 6653743 -236010610 + L1ME2 LINE L1 5878 6086 -78 2214 192 24 34 chr1 6653912 6654225 -236010128 - MLT1D LTR MaLR 0 505 197 1927 120 0 35 chr1 6654225 6654542 -236009811 - AluSx SINE Alu -6 306 1 2214 192 24 34 chr1 6654542 6654734 -236009619 - MLT1D LTR MaLR -308 197 5 193 234 141 16 chr1 6654788 6654852 -236009501 + L2 LINE L2 3200 3271 -1 1429 153 81 0 chr1 6654986 6655275 -236009078 + AluJb SINE Alu 1 310 0 229 341 35 12 chr1 6655678 6655763 -236008590 - MIR3 SINE MIR -109 99 13 198 167 0 0 chr1 6655884 6655920 -236008433 + T-rich Low_complexity Low_complexity 1 36 0 1829 147 30 0 chr1 6655929 6656229 -236008124 - AluJb SINE Alu -3 309 1 183 357 0 0 chr1 6656351 6656421 -236007932 - MER5A DNA MER1_type -110 79 10 1062 93 7 0 chr1 6656455 6656605 -236007748 + AluSg SINE Alu 1 151 -159 613 125 0 0 chr1 6656606 6656694 -236007659 + AluJo/FRAM SINE Alu 203 290 -22 2126 127 0 0 chr1 6656842 6657150 -236007203 + AluSq SINE Alu 1 308 -5 289 214 48 24 chr1 6657992 6658076 -236006277 + L1 LINE L1 4918 5003 -1143 231 211 18 0 chr1 6658096 6658153 -236006200 + L1 LINE L1 3505 3562 -2584 34 24 0 0 chr1 6658314 6658355 -236005998 + AT_rich Low_complexity Low_complexity 1 41 0 2106 105 0 7 chr1 6658458 6658753 -236005600 - AluSx SINE Alu -19 293 1 21 36 0 0 chr1 6658766 6658794 -236005559 + AT_rich Low_complexity Low_complexity 1 28 0 1386 264 82 40 chr1 6658956 6659347 -236005006 - L1M4 LINE L1 -1298 4848 4475 2187 92 0 10 chr1 6659347 6659642 -236004711 - AluSq SINE Alu -21 292 1 1386 264 82 40 chr1 6659642 6659970 -236004383 - L1M4 LINE L1 -1671 4475 4099 2193 180 78 32 chr1 6659971 6660227 -236004126 - LTR42 LTR ERVL 0 495 252 2113 59 0 7 chr1 6660227 6660497 -236003856 - AluY SINE Alu -8 303 36 2193 180 78 32 chr1 6660497 6660642 -236003711 - LTR42 LTR ERVL -243 252 66 2210 123 153 5 chr1 6660642 6661015 -236003338 - MSTA LTR MaLR 0 428 1 2193 180 78 32 chr1 6661015 6661085 -236003268 - LTR42 LTR ERVL -429 66 1 25 51 0 0 chr1 6661186 6661225 -236003128 + AT_rich Low_complexity Low_complexity 1 39 0 999 150 0 6 chr1 6661268 6661428 -236002925 - AluJ SINE Alu -18 294 136 925 226 157 32 chr1 6661477 6661870 -236002483 - MLT1F1 LTR MaLR -21 546 28 1714 174 7 7 chr1 6661870 6662175 -236002178 + AluJb SINE Alu 1 305 -7 2006 124 0 13 chr1 6662250 6662549 -236001804 + AluSx SINE Alu 1 295 -17 811 302 14 14 chr1 6662570 6662921 -236001432 - L1M4 LINE L1 -2456 3690 3340 453 285 94 43 chr1 6662944 6663179 -236001174 - L2 LINE L2 -643 2671 2425 239 222 19 0 chr1 6663223 6663277 -236001076 - MIR SINE MIR -12 250 196 265 244 0 26 chr1 6663277 6663355 -236000998 + (TA)n Simple_repeat Simple_repeat 2 77 0 225 0 0 0 chr1 6663362 6663387 -236000966 + (TG)n Simple_repeat Simple_repeat 2 26 0 431 151 35 47 chr1 6663388 6663474 -236000879 - MIR SINE MIR -58 204 120 193 214 24 0 chr1 6663545 6663587 -236000766 - L2 LINE L2 -959 2355 2313 376 320 12 17 chr1 6663613 6663785 -236000568 - L2 LINE L2 -325 2988 2818 697 142 50 8 chr1 6664355 6664475 -235999878 - AluJ SINE Alu -186 126 2 215 361 37 9 chr1 6664537 6664645 -235999708 + MIR3 SINE MIR 77 187 -21 186 43 0 0 chr1 6664744 6664767 -235999586 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 722 219 3 0 chr1 6664773 6665097 -235999256 + CT-rich Low_complexity Low_complexity 1 324 0 191 61 30 0 chr1 6665126 6665159 -235999194 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1766 134 10 10 chr1 6665159 6665444 -235998909 - AluSx SINE Alu -27 285 1 29 70 0 0 chr1 6665817 6665874 -235998479 + AT_rich Low_complexity Low_complexity 1 57 0 1555 154 0 42 chr1 6665971 6666256 -235998097 + AluJo SINE Alu 34 306 -6 2225 96 3 0 chr1 6666378 6666681 -235997672 + AluSx SINE Alu 1 304 -8 1528 158 3 67 chr1 6666780 6666892 -235997461 + MLT2D LTR ERVL 1 119 -295 2160 85 13 7 chr1 6666892 6667198 -235997155 - AluSp SINE Alu -5 308 1 1528 158 3 67 chr1 6667198 6667212 -235997141 + MLT2D LTR ERVL 119 132 -282 606 63 13 0 chr1 6667212 6667291 -235997062 - MADE1 DNA Mariner 0 80 1 1528 158 3 67 chr1 6667291 6667461 -235996892 + MLT2D LTR ERVL 132 279 -135 887 27 0 9 chr1 6668155 6668266 -235996087 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 1762 144 17 17 chr1 6668724 6669023 -235995330 + AluSx SINE Alu 1 299 -13 1235 185 65 45 chr1 6669121 6669413 -235994940 + AluJo SINE Alu 2 299 -3 2003 111 16 29 chr1 6669635 6669775 -235994578 + AluSx SINE Alu 1 141 -171 1872 128 17 0 chr1 6669775 6670071 -235994282 + AluSx SINE Alu 1 301 -11 2003 111 16 29 chr1 6670071 6670236 -235994117 + AluSx SINE Alu 141 302 -10 1032 97 14 7 chr1 6670418 6670562 -235993791 - THE1B LTR MaLR 0 364 220 2012 103 50 0 chr1 6670564 6670846 -235993507 - AluSg SINE Alu -14 296 1 928 92 0 0 chr1 6670868 6670987 -235993366 - THE1B LTR MaLR -245 119 1 21 0 0 0 chr1 6671004 6671025 -235993328 + AT_rich Low_complexity Low_complexity 1 21 0 2089 104 3 10 chr1 6671031 6671328 -235993025 + AluSx SINE Alu 14 308 -4 2131 89 28 3 chr1 6671378 6671669 -235992684 - AluSx SINE Alu -14 298 1 3534 120 47 34 chr1 6671843 6672461 -235991892 + MER39B LTR ERV1 26 651 -2 1324 126 0 102 chr1 6672469 6672762 -235991591 - AluJo SINE Alu -3 309 47 476 312 158 14 chr1 6673128 6673343 -235991010 - MIR SINE MIR -10 252 7 2330 61 7 0 chr1 6673376 6673673 -235990680 + AluSx SINE Alu 1 299 -13 1936 129 88 38 chr1 6673872 6674214 -235990139 + MER101 LTR ERV1 1 359 -115 1598 153 0 8 chr1 6674207 6674468 -235989885 - AluSx SINE Alu -10 302 44 1972 171 97 95 chr1 6674621 6675231 -235989122 + LTR36 LTR ERV1 1 611 0 783 172 8 0 chr1 6675330 6675464 -235988889 - FLAM_C SINE Alu 0 143 9 192 97 0 0 chr1 6675484 6675515 -235988838 + (T)n Simple_repeat Simple_repeat 1 31 0 1899 67 0 4 chr1 6675515 6675769 -235988584 - AluY SINE Alu -58 253 1 356 181 12 0 chr1 6675939 6676022 -235988331 + C-rich Low_complexity Low_complexity 2 85 0 1401 149 0 5 chr1 6676595 6676809 -235987544 - AluJb SINE Alu -15 297 85 2164 123 0 0 chr1 6676819 6677129 -235987224 - AluSx SINE Alu -2 310 1 2233 96 0 3 chr1 6677139 6677441 -235986912 - AluSx SINE Alu -8 304 4 1052 303 64 30 chr1 6678548 6678687 -235985666 + L1MC/D LINE L1 4532 4665 -1481 2182 94 3 7 chr1 6678687 6678986 -235985367 - AluSx SINE Alu -14 298 1 1052 303 64 30 chr1 6678986 6679516 -235984837 + L1MC/D LINE L1 4665 5224 -922 803 112 0 0 chr1 6679523 6679630 -235984723 + AluJb SINE Alu 5 111 -201 36 23 0 0 chr1 6679647 6679690 -235984663 + AT_rich Low_complexity Low_complexity 1 43 0 222 116 0 0 chr1 6679711 6679754 -235984599 + (TA)n Simple_repeat Simple_repeat 2 44 0 1832 148 0 7 chr1 6679757 6680041 -235984312 - AluSq SINE Alu -31 282 1 760 252 45 77 chr1 6680045 6680139 -235984214 + L1MC/D LINE L1 5219 5315 -1016 1697 145 46 3 chr1 6680139 6680422 -235983931 - AluJb SINE Alu -17 295 1 760 252 45 77 chr1 6680422 6680705 -235983648 + L1MC/D LINE L1 5315 5585 -746 369 313 23 31 chr1 6680853 6680981 -235983372 + MLT1I LTR MaLR 203 329 -80 1958 128 30 0 chr1 6680981 6681277 -235983076 + AluSx SINE Alu 1 305 -7 904 138 14 0 chr1 6681331 6681469 -235982884 + FAM SINE Alu 18 157 -28 1592 149 52 21 chr1 6682131 6682419 -235981934 + AluJb SINE Alu 1 297 -15 2052 116 0 0 chr1 6682809 6683138 -235981215 + AluSq SINE Alu 1 329 0 2220 70 0 11 chr1 6683141 6683455 -235980898 + AluSg1 SINE Alu 1 311 0 1633 250 63 39 chr1 6684118 6684285 -235980068 + L1MD2 LINE L1 122 284 -6256 2045 133 0 0 chr1 6684285 6684585 -235979768 + AluSx SINE Alu 1 300 -12 1633 250 63 39 chr1 6684585 6684650 -235979703 + L1MD2 LINE L1 284 346 -6194 2279 101 0 0 chr1 6684650 6684956 -235979397 - AluSg SINE Alu -4 306 1 1633 250 63 39 chr1 6684956 6685312 -235979041 + L1MD2 LINE L1 346 1025 -5515 1639 165 3 14 chr1 6685314 6685605 -235978748 + AluJo SINE Alu 3 290 -22 519 208 33 0 chr1 6685614 6685734 -235978619 + L1MD2 LINE L1 4805 4928 -1612 4739 129 38 32 chr1 6685736 6686050 -235978303 + Tigger3b DNA MER2_type 1 312 -2716 369 0 0 0 chr1 6686050 6686091 -235978262 + (TA)n Simple_repeat Simple_repeat 1 41 0 1888 116 4 4 chr1 6686100 6686377 -235977976 + AluSx SINE Alu 1 277 -35 275 0 29 0 chr1 6686380 6686415 -235977938 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4739 129 38 32 chr1 6686415 6686787 -235977566 + Tigger3b DNA MER2_type 320 709 -2319 1977 102 42 0 chr1 6686787 6687071 -235977282 + AluSq SINE Alu 1 296 -17 4739 129 38 32 chr1 6687071 6687197 -235977156 + Tigger3b DNA MER2_type 709 833 -398 3599 104 2 4 chr1 6687197 6687677 -235976676 - MER1A DNA MER1_type 0 529 51 2007 119 0 0 chr1 6687677 6687955 -235976398 - AluSx SINE Alu -33 279 2 1721 148 19 0 chr1 6687966 6688230 -235976123 + Tigger3b DNA MER2_type 973 1241 0 1358 228 54 50 chr1 6688231 6688696 -235975657 + L1MD2 LINE L1 4930 5396 -1144 873 133 0 0 chr1 6688701 6688829 -235975524 + FLAM_C SINE Alu 5 132 -11 2285 152 28 54 chr1 6688844 6689273 -235975080 + LTR3 LTR ERVK 5 422 -10 999 125 0 7 chr1 6689283 6689435 -235974918 + AluJb SINE Alu 144 294 -18 3682 221 70 14 chr1 6689438 6690310 -235974043 + L1MD2 LINE L1 5398 6220 -533 1320 147 184 109 chr1 6690310 6690365 -235973988 + MER65A LTR ERV1 1 50 -395 1772 136 45 0 chr1 6690365 6690652 -235973701 + AluSx SINE Alu 1 300 -12 191 61 30 0 chr1 6690656 6690689 -235973664 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1320 147 184 109 chr1 6690689 6690907 -235973446 + MER65A LTR ERV1 52 322 -123 2214 98 0 16 chr1 6690907 6691222 -235973131 - AluSx SINE Alu -2 310 1 1320 147 184 109 chr1 6691222 6691356 -235972997 + MER65A LTR ERV1 322 445 0 3682 221 70 14 chr1 6691356 6691703 -235972650 + L1MD2 LINE L1 6220 6740 -13 2284 80 10 3 chr1 6691723 6692023 -235972330 - AluSq SINE Alu -11 302 1 482 114 29 0 chr1 6692034 6692104 -235972249 - tRNA-Glu-GAG tRNA tRNA -3 72 1 1590 160 3 42 chr1 6692256 6692543 -235971810 + AluJo SINE Alu 26 301 -11 1555 273 67 62 chr1 6692600 6693534 -235970819 + L1ME3A LINE L1 5188 6140 -30 2196 79 24 0 chr1 6693617 6693909 -235970444 + AluSp SINE Alu 1 299 -14 180 277 21 0 chr1 6694140 6694187 -235970166 - MIR SINE MIR -14 248 201 708 111 0 0 chr1 6694409 6694517 -235969836 + (CA)n Simple_repeat Simple_repeat 1 108 0 825 186 32 50 chr1 6694588 6694809 -235969544 - MER20 DNA MER1_type 0 219 3 1542 115 165 11 chr1 6695210 6695470 -235968883 + AluSg SINE Alu 1 300 0 2091 105 0 23 chr1 6695490 6695795 -235968558 + AluSx SINE Alu 1 298 -14 1563 154 16 38 chr1 6695849 6696168 -235968185 + AluJo SINE Alu 1 312 0 2171 110 7 0 chr1 6696184 6696492 -235967861 + AluSg SINE Alu 1 310 0 281 311 39 10 chr1 6697193 6697296 -235967057 + MIR SINE MIR 7 112 -150 1269 137 27 41 chr1 6697305 6697524 -235966829 + AluJo SINE Alu 7 222 -90 314 288 137 7 chr1 6697575 6697714 -235966639 + MIR SINE MIR 106 262 0 1973 105 3 7 chr1 6697889 6698215 -235966138 + AluSq SINE Alu 1 325 0 762 214 46 100 chr1 6698400 6698680 -235965673 - MER5C DNA MER1_type -52 272 8 1508 150 70 28 chr1 6698931 6699218 -235965135 - AluJb SINE Alu -13 299 1 33 25 0 0 chr1 6699779 6699819 -235964534 + AT_rich Low_complexity Low_complexity 1 40 0 2320 87 0 0 chr1 6700793 6701092 -235963261 + AluSx SINE Alu 1 299 -13 679 228 132 0 chr1 6701347 6701514 -235962839 - MIR SINE MIR -6 256 68 218 275 113 65 chr1 6702978 6703207 -235961146 - MIR SINE MIR -3 259 20 202 258 0 32 chr1 6703366 6703388 -235960965 + A-rich Low_complexity Low_complexity 32 53 -38 1648 123 82 10 chr1 6703388 6703680 -235960673 + AluSq SINE Alu 1 313 0 202 258 0 32 chr1 6703680 6703719 -235960634 + A-rich Low_complexity Low_complexity 53 91 0 431 213 11 33 chr1 6703732 6703915 -235960438 + GA-rich Low_complexity Low_complexity 2 180 0 315 0 0 0 chr1 6703962 6703997 -235960356 + (GGA)n Simple_repeat Simple_repeat 1 35 0 378 282 99 50 chr1 6704541 6704722 -235959631 + MIR SINE MIR 59 248 -14 1747 171 10 0 chr1 6705355 6705654 -235958699 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr1 6705926 6705947 -235958406 + AT_rich Low_complexity Low_complexity 1 21 0 2281 86 0 10 chr1 6706021 6706369 -235957984 + AluY SINE Alu 1 345 0 505 219 42 17 chr1 6706931 6707050 -235957303 - Zaphod DNA AcHobo -5 4026 3905 667 248 159 37 chr1 6707060 6707387 -235956966 + Zaphod DNA AcHobo 72 438 -3593 1393 125 5 5 chr1 6707445 6707661 -235956692 - AluJb SINE Alu -13 299 84 990 224 98 35 chr1 6707663 6708154 -235956199 + Zaphod DNA AcHobo 469 990 -3041 907 199 199 30 chr1 6708152 6708264 -235956089 + Zaphod DNA AcHobo 3595 3687 -344 * 2191 98 0 0 chr1 6708264 6708559 -235955794 - AluSx SINE Alu -17 295 1 907 199 199 30 chr1 6708559 6708812 -235955541 + Zaphod DNA AcHobo 3687 4022 -9 180 296 0 0 chr1 6708824 6708868 -235955485 + L2 LINE L2 3270 3313 0 751 286 91 0 chr1 6709034 6709254 -235955099 - MIR SINE MIR -8 254 15 1174 225 126 37 chr1 6709257 6709693 -235954660 - Charlie4a DNA MER1_type -7 501 27 189 354 73 0 chr1 6710006 6710088 -235954265 - MIR SINE MIR 0 262 175 2053 117 0 0 chr1 6710144 6710427 -235953926 + AluSx SINE Alu 1 283 -29 215 273 61 0 chr1 6710473 6710539 -235953814 - MIR SINE MIR -89 173 104 824 225 78 45 chr1 6710561 6710805 -235953548 - MIR SINE MIR -9 253 2 2260 84 0 0 chr1 6711969 6712266 -235952087 - AluSx SINE Alu -15 297 1 855 232 116 41 chr1 6712267 6712560 -235951793 + L2 LINE L2 2995 3309 -4 181 298 47 82 chr1 6712679 6712778 -235951575 - L2 LINE L2 -191 3081 2989 2304 91 3 0 chr1 6712778 6713087 -235951266 + AluSg SINE Alu 1 310 0 181 298 47 82 chr1 6713087 6713158 -235951195 - L2 LINE L2 -283 2989 2917 339 25 0 0 chr1 6713807 6713847 -235950506 + (TCTCCC)n Simple_repeat Simple_repeat 5 44 0 5187 73 34 55 chr1 6713853 6714688 -235949665 + SVA Other Other 50 866 -520 2684 103 25 76 chr1 6714711 6715314 -235949039 + SVA Other Other 476 1047 -339 802 137 0 43 chr1 6715342 6715481 -235948872 + FLAM_C SINE Alu 1 133 0 359 282 53 23 chr1 6716592 6716723 -235947630 - L2 LINE L2 -16 3297 3163 2315 73 0 13 chr1 6716773 6717087 -235947266 - AluSq SINE Alu -3 310 1 742 191 0 0 chr1 6717373 6717504 -235946849 + FLAM_A SINE Alu 1 131 -2 237 329 197 7 chr1 6717755 6717892 -235946461 + MIR SINE MIR 1 163 -99 505 190 42 21 chr1 6717892 6718034 -235946319 + HAL1 LINE L1 2270 2414 -93 288 206 48 48 chr1 6718145 6718208 -235946145 - MLT1I LTR MaLR -107 302 240 252 241 108 0 chr1 6718308 6718391 -235945962 - MLT1I LTR MaLR -272 137 46 1912 109 28 7 chr1 6718669 6718952 -235945401 + AluSx SINE Alu 3 291 -21 1555 133 88 35 chr1 6719226 6719511 -235944842 - AluJo SINE Alu -1 301 2 24 0 0 0 chr1 6719514 6719538 -235944815 + AT_rich Low_complexity Low_complexity 1 24 0 2172 125 0 0 chr1 6719624 6719936 -235944417 + AluSx SINE Alu 1 312 0 2186 91 0 7 chr1 6719945 6720242 -235944111 - AluSc SINE Alu -14 295 1 2248 115 0 0 chr1 6720295 6720607 -235943746 + AluSx SINE Alu 1 312 0 2071 116 7 0 chr1 6720636 6720946 -235943407 + AluSx SINE Alu 1 312 0 3796 137 83 27 chr1 6720946 6721533 -235942820 + L1MA4 LINE L1 5044 5702 -598 2000 138 3 0 chr1 6721533 6721838 -235942515 + AluSx SINE Alu 1 306 -6 3796 137 83 27 chr1 6721838 6722201 -235942152 + L1MA4 LINE L1 5702 6043 -257 1248 71 88 6 chr1 6722210 6722380 -235941973 - MER84 LTR ERVI 0 507 324 863 70 0 0 chr1 6722380 6722495 -235941858 + MER84-int LTR ERV1 1242 1356 -3598 754 83 148 0 chr1 6722495 6722603 -235941750 - MER84 LTR ERVI -383 124 1 1123 171 25 25 chr1 6722603 6722842 -235941511 + L1MA4 LINE L1 6054 6292 -8 181 213 75 150 chr1 6722884 6722964 -235941389 - L2 LINE L2 -18 3295 3222 21 0 0 0 chr1 6724496 6724517 -235939836 + AT_rich Low_complexity Low_complexity 1 21 0 1576 164 39 4 chr1 6724833 6725114 -235939239 - AluJb SINE Alu -15 297 7 1902 126 30 0 chr1 6725128 6725430 -235938923 - AluSx SINE Alu -1 311 1 2101 106 7 3 chr1 6725575 6725868 -235938485 - AluSg1 SINE Alu -15 294 1 733 233 158 0 chr1 6725967 6726169 -235938184 - MIR SINE MIR -21 241 8 483 285 130 36 chr1 6726280 6726557 -235937796 - L1MC/D LINE L1 -2097 5711 5409 349 267 43 26 chr1 6726615 6726731 -235937622 + MER94 DNA DNA 1 118 -16 913 176 0 0 chr1 6726849 6726997 -235937356 + FRAM SINE Alu 1 146 -30 187 312 117 0 chr1 6727311 6727388 -235936965 + L2 LINE L2 3209 3294 -19 288 260 0 0 chr1 6727388 6727461 -235936892 + (TGGG)n Simple_repeat Simple_repeat 3 75 0 820 203 48 0 chr1 6727557 6727744 -235936609 - AluJb SINE Alu -4 308 113 1578 138 20 79 chr1 6728171 6728476 -235935877 + AluJo SINE Alu 1 287 -25 4393 111 33 6 chr1 6728552 6729243 -235935110 - L1MA5A LINE L1 -1 6296 5587 1558 192 0 7 chr1 6729392 6729684 -235934669 + AluJo SINE Alu 1 290 -22 2074 123 17 0 chr1 6729783 6730085 -235934268 + AluSg SINE Alu 1 307 -3 1895 154 0 3 chr1 6730274 6730572 -235933781 - AluSx SINE Alu -15 297 1 268 312 72 8 chr1 6730875 6731000 -235933353 - L1MC/D LINE L1 -1949 5859 5727 2181 92 3 0 chr1 6731340 6731633 -235932720 - AluSg SINE Alu -16 294 1 1568 193 0 13 chr1 6731664 6731965 -235932388 + AluJo SINE Alu 1 297 -15 2289 60 0 0 chr1 6733406 6733718 -235930635 + AluSq SINE Alu 1 312 0 192 152 0 0 chr1 6733730 6733763 -235930590 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 1454 159 31 31 chr1 6733935 6734225 -235930128 + AluJo SINE Alu 1 290 -22 338 60 0 20 chr1 6734330 6734380 -235929973 - MADE1 DNA Mariner 0 80 32 885 146 0 0 chr1 6734382 6734512 -235929841 + AluSx SINE Alu 6 135 -178 1849 110 10 40 chr1 6734512 6734811 -235929542 + AluSx SINE Alu 1 290 -22 301 146 427 0 chr1 6734815 6734897 -235929456 + Charlie1 DNA MER1_type 2642 2758 -3 1896 91 0 0 chr1 6735246 6735499 -235928854 + AluSq SINE Alu 60 312 -1 1387 77 0 6 chr1 6735499 6735681 -235928672 + AluSx SINE Alu 120 300 -12 1608 164 0 50 chr1 6735783 6736101 -235928252 + AluJo SINE Alu 1 302 -10 2384 61 0 0 chr1 6736103 6736397 -235927956 + AluY SINE Alu 1 294 -17 2299 88 7 3 chr1 6736603 6736909 -235927444 - AluSq SINE Alu -6 307 1 21 36 0 0 chr1 6737587 6737615 -235926738 + AT_rich Low_complexity Low_complexity 1 28 0 2234 67 0 0 chr1 6738467 6738775 -235925578 - AluY SINE Alu 0 308 1 714 175 32 0 chr1 6739213 6739339 -235925014 - FLAM_C SINE Alu -2 131 2 1657 118 0 0 chr1 6739506 6739743 -235924610 - AluSg SINE Alu -3 307 71 2222 97 0 3 chr1 6739743 6740051 -235924302 - AluSg SINE Alu -1 309 1 581 114 0 0 chr1 6740051 6740130 -235924223 - AluSg SINE Alu -230 80 2 1180 76 0 13 chr1 6740148 6740305 -235924048 - AluSg/x SINE Alu -14 296 142 1780 148 10 13 chr1 6740317 6740620 -235923733 + AluJb SINE Alu 1 302 -10 465 292 31 42 chr1 6740657 6740917 -235923436 - L1MC4a LINE L1 -1864 5944 5688 808 154 114 50 chr1 6740982 6741202 -235923151 - L1MC1 LINE L1 0 6333 6100 1608 189 0 3 chr1 6741271 6741557 -235922796 - AluJb SINE Alu -27 285 1 2214 83 0 17 chr1 6741631 6741933 -235922420 + AluY SINE Alu 2 298 -13 747 159 0 36 chr1 6742615 6742753 -235921600 - FLAM_C SINE Alu 0 143 11 328 262 170 7 chr1 6742886 6743027 -235921326 + MIR SINE MIR 20 183 -79 274 174 113 42 chr1 6743116 6743187 -235921166 - MIR SINE MIR -91 117 40 623 278 57 5 chr1 6743189 6743398 -235920955 - MER58A DNA MER1_type 0 224 5 2260 86 0 0 chr1 6743411 6743713 -235920640 - AluY SINE Alu -9 302 1 2110 100 3 37 chr1 6743721 6744042 -235920311 - AluSx SINE Alu -2 310 1 673 81 101 0 chr1 6744639 6744738 -235919615 - HY1 scRNA scRNA -2 110 2 211 213 0 0 chr1 6744897 6744944 -235919409 - L2 LINE L2 -5 3267 3221 207 255 85 66 chr1 6745085 6745191 -235919162 + L2 LINE L2 2366 2473 -841 1940 143 0 7 chr1 6747260 6747567 -235916786 + AluJo SINE Alu 1 305 -7 231 217 29 29 chr1 6747650 6747719 -235916634 + MLT1K LTR MaLR 25 93 -495 587 279 157 39 chr1 6748123 6748556 -235915797 - L2 LINE L2 -1 3312 2829 2243 91 3 10 chr1 6748725 6749033 -235915320 - AluSx SINE Alu -6 306 1 1787 144 17 7 chr1 6749164 6749463 -235914890 - AluSx SINE Alu -10 302 1 1785 142 24 0 chr1 6749463 6749751 -235914602 - AluJb SINE Alu -17 295 1 1801 138 17 14 chr1 6749809 6750105 -235914248 - AluSx SINE Alu -14 298 2 2110 114 0 3 chr1 6750130 6750429 -235913924 + AluSg SINE Alu 1 298 -12 1100 113 12 27 chr1 6751840 6752442 -235911911 + (CACCAT)n Simple_repeat Simple_repeat 1 593 0 2213 104 0 3 chr1 6752628 6752936 -235911417 - AluSg SINE Alu -2 308 2 2222 100 0 0 chr1 6753294 6753593 -235910760 - AluSq SINE Alu -14 299 1 2174 94 0 25 chr1 6754408 6754726 -235909627 + AluSq SINE Alu 1 310 -3 1208 133 0 122 chr1 6754875 6755138 -235909215 - AluJb SINE Alu -13 299 69 3070 146 25 13 chr1 6755169 6755519 -235908834 - L1MB3 LINE L1 -1 6182 5838 1957 130 3 0 chr1 6755519 6755819 -235908534 - AluSx SINE Alu -11 301 1 3070 146 25 13 chr1 6755819 6756155 -235908198 - L1MB3 LINE L1 -345 5838 5321 376 143 32 0 chr1 6756168 6756231 -235908122 - U6 snRNA snRNA -42 65 1 2051 120 0 7 chr1 6756276 6756568 -235907785 - AluSx SINE Alu -11 301 12 223 70 23 23 chr1 6756675 6756718 -235907635 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 752 211 3 6 chr1 6756740 6757019 -235907334 + CT-rich Low_complexity Low_complexity 1 278 0 351 197 0 0 chr1 6757094 6757160 -235907193 - AluJ/FRAM SINE Alu -4 298 233 * 599 178 24 21 chr1 6757159 6757300 -235907053 - MER34B LTR ERV1 -400 142 1 305 167 0 0 chr1 6757319 6757373 -235906980 + Alu SINE Alu 242 295 -5 306 0 0 0 chr1 6757376 6757410 -235906943 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 868 261 46 79 chr1 6757415 6757548 -235906805 - L1M4 LINE L1 -2166 3980 3844 2415 56 0 3 chr1 6757548 6757850 -235906503 - AluY SINE Alu -10 301 1 868 261 46 79 chr1 6757850 6758058 -235906295 - L1M4 LINE L1 -2302 3844 3631 2182 88 0 3 chr1 6758058 6758355 -235905998 - AluY SINE Alu -15 296 1 868 261 46 79 chr1 6758355 6758382 -235905971 - L1M4 LINE L1 -2515 3631 3605 2153 153 67 20 chr1 6758382 6758786 -235905567 - MSTB LTR MaLR -2 424 2 868 261 46 79 chr1 6758786 6758897 -235905456 - L1M4 LINE L1 -2541 3605 3515 * 987 231 37 26 chr1 6758895 6759163 -235905190 - L1MB5 LINE L1 0 6174 5904 711 173 43 7 chr1 6759174 6759313 -235905040 - L1MB5 LINE L1 -379 5795 5652 2344 103 0 0 chr1 6759321 6759633 -235904720 - AluSx SINE Alu 0 312 1 1641 98 43 35 chr1 6759634 6759890 -235904463 + MSTB1 LTR MaLR 175 432 0 306 248 4 111 chr1 6759890 6760005 -235904348 - L1MEd LINE L1 -5023 1096 1015 2015 146 0 3 chr1 6760005 6760314 -235904039 - AluSx SINE Alu -4 308 1 306 248 4 111 chr1 6760314 6760424 -235903929 - L1MEd LINE L1 -5104 1015 895 1589 174 62 62 chr1 6760426 6760623 -235903730 - MSTD LTR MaLR 0 396 196 2003 121 0 0 chr1 6760623 6760925 -235903428 + AluSx SINE Alu 1 302 0 1589 174 62 62 chr1 6760925 6761083 -235903270 - MSTD LTR MaLR -199 197 40 1636 171 36 13 chr1 6761084 6761389 -235902964 - AluJb SINE Alu 0 312 1 22 56 0 0 chr1 6761540 6761576 -235902777 + AT_rich Low_complexity Low_complexity 1 36 0 716 101 0 0 chr1 6761606 6761705 -235902648 + L1MA2 LINE L1 6206 6304 0 22 0 0 0 chr1 6761705 6761727 -235902626 + AT_rich Low_complexity Low_complexity 1 22 0 1914 129 0 10 chr1 6761788 6762083 -235902270 - AluSx SINE Alu -5 307 16 574 263 75 94 chr1 6762220 6762328 -235902025 - HAL1 LINE L1 -841 1666 1557 2116 114 0 13 chr1 6762328 6762645 -235901708 - AluSq SINE Alu 0 313 1 574 263 75 94 chr1 6762645 6762962 -235901391 - HAL1 LINE L1 -950 1557 1249 1763 79 64 19 chr1 6763038 6763339 -235901014 + AluSg SINE Alu 1 313 0 1957 106 3 20 chr1 6763343 6763635 -235900718 - AluSc SINE Alu -14 295 9 2030 121 14 0 chr1 6763646 6763943 -235900410 - AluSg SINE Alu -9 301 1 314 308 170 11 chr1 6763943 6764125 -235900228 - HAL1 LINE L1 -1477 1030 820 2164 103 7 0 chr1 6764520 6764822 -235899531 - AluSx SINE Alu -8 304 1 236 29 0 29 chr1 6767369 6767403 -235896950 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 1854 91 84 0 chr1 6767403 6767677 -235896676 - AluSg1 SINE Alu -12 297 1 2164 118 7 0 chr1 6767677 6767982 -235896371 - AluSx SINE Alu -5 307 1 2261 81 0 3 chr1 6768761 6769058 -235895295 - AluSg SINE Alu -14 296 1 360 0 0 0 chr1 6769198 6769238 -235895115 + (TC)n Simple_repeat Simple_repeat 2 41 0 2283 82 7 3 chr1 6769253 6769559 -235894794 - AluSp SINE Alu -6 307 1 424 204 204 0 chr1 6769696 6769833 -235894520 + L1MD2 LINE L1 6194 6358 -1 2089 106 0 3 chr1 6770090 6770383 -235893970 - AluSq SINE Alu -21 292 1 2078 101 14 0 chr1 6770566 6770863 -235893490 + AluSx SINE Alu 1 301 -11 196 255 0 21 chr1 6771003 6771050 -235893303 - MIR SINE MIR -62 146 101 1926 100 0 45 chr1 6771076 6771385 -235892968 + AluSp SINE Alu 1 295 -18 329 309 147 16 chr1 6772042 6772233 -235892120 + L2 LINE L2 2549 2764 -550 367 309 216 10 chr1 6772643 6772837 -235891516 - MIR SINE MIR -12 250 17 364 188 188 62 chr1 6778701 6778829 -235885524 + L2 LINE L2 3127 3270 -2 28 0 0 0 chr1 6780120 6780148 -235884205 + GC_rich Low_complexity Low_complexity 1 28 0 189 303 146 18 chr1 6780599 6780764 -235883589 + L2 LINE L2 2226 2411 -903 192 40 0 0 chr1 6782279 6782304 -235882049 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2211 103 31 0 chr1 6782308 6782600 -235881753 - AluSp SINE Alu -12 301 1 796 249 86 20 chr1 6783410 6783655 -235880698 - MIR SINE MIR 0 262 2 362 192 68 89 chr1 6784148 6784294 -235880059 - MIR SINE MIR -25 237 95 242 309 0 0 chr1 6784423 6784504 -235879849 - MIR SINE MIR -123 139 59 479 288 137 24 chr1 6784558 6784850 -235879503 - L2 LINE L2 0 3313 2989 1976 148 3 3 chr1 6785029 6785334 -235879019 - AluJb SINE Alu -7 305 1 189 238 181 29 chr1 6786215 6786320 -235878033 - L2 LINE L2 -3 3310 3190 24 0 0 0 chr1 6787831 6787855 -235876498 + GC_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr1 6788057 6788086 -235876267 + (CCG)n Simple_repeat Simple_repeat 2 30 0 291 386 0 0 chr1 6788581 6788841 -235875512 + (CGGTG)n Simple_repeat Simple_repeat 1 260 0 24 53 0 0 chr1 6791139 6791177 -235873176 + AT_rich Low_complexity Low_complexity 1 38 0 234 0 0 0 chr1 6791495 6791521 -235872832 + (CA)n Simple_repeat Simple_repeat 2 27 0 2472 58 0 0 chr1 6791548 6791841 -235872512 - AluSc SINE Alu -14 295 3 2153 129 7 0 chr1 6792001 6792341 -235872012 - AluSp SINE Alu 0 313 1 2362 98 0 3 chr1 6792675 6792981 -235871372 - AluSq SINE Alu -8 305 1 180 0 0 0 chr1 6793164 6793184 -235871169 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 423 249 217 37 chr1 6793452 6793655 -235870698 + MIR SINE MIR 7 253 -9 2077 139 0 0 chr1 6793655 6793956 -235870397 - AluSx SINE Alu -11 301 1 423 249 217 37 chr1 6793956 6793969 -235870384 + MIR SINE MIR 253 262 0 2312 86 3 0 chr1 6794582 6794872 -235869481 + AluSq SINE Alu 1 291 -22 2015 156 0 3 chr1 6795529 6795830 -235868523 - AluSx SINE Alu -12 300 1 2046 151 0 0 chr1 6796144 6796448 -235867905 + AluJb SINE Alu 1 304 -8 1530 143 18 94 chr1 6796574 6796902 -235867451 - AluJo SINE Alu -9 303 1 285 328 29 23 chr1 6797071 6797245 -235867108 - L2 LINE L2 -2888 426 252 693 306 58 42 chr1 6797293 6797457 -235866896 - L2 LINE L2 0 3313 3153 3222 66 50 0 chr1 6797457 6797839 -235866514 + MLT2A1 LTR ERVL 1 407 -37 336 48 0 0 chr1 6797839 6797881 -235866472 + (TA)n Simple_repeat Simple_repeat 2 43 0 3222 66 50 0 chr1 6797881 6797921 -235866432 + MLT2A1 LTR ERVL 407 444 0 693 306 58 42 chr1 6797921 6798184 -235866169 - L2 LINE L2 -160 3153 2879 264 273 43 117 chr1 6798183 6798314 -235866039 - L2 LINE L2 -675 2639 2539 * 2079 127 0 29 chr1 6798314 6798628 -235865725 + AluJb SINE Alu 1 305 -7 264 273 43 117 chr1 6798628 6798778 -235865575 - L2 LINE L2 -775 2539 2379 2262 119 7 0 chr1 6799423 6799754 -235864599 - AluSx SINE Alu 0 333 1 207 97 0 0 chr1 6800008 6800039 -235864314 - L2 LINE L2 -3 3269 3239 244 278 112 58 chr1 6800376 6800417 -235863936 + L1ME LINE L1 5613 5650 -471 2106 123 14 0 chr1 6800417 6800710 -235863643 + AluSx SINE Alu 1 297 -15 244 278 112 58 chr1 6800710 6800909 -235863444 + L1ME LINE L1 5650 5866 -255 616 211 226 5 chr1 6800910 6801109 -235863244 - MIR SINE MIR -8 254 12 600 150 10 0 chr1 6801151 6801251 -235863102 + L1PA13 LINE L1 6052 6152 -11 701 212 117 35 chr1 6801301 6801532 -235862821 - MLT1K LTR MaLR -2 586 337 247 283 52 98 chr1 6801626 6801799 -235862554 - MLT1K LTR MaLR -392 196 32 1490 270 57 17 chr1 6802213 6802631 -235861722 - LTR16A LTR ERVL 0 450 16 647 261 75 37 chr1 6802679 6802856 -235861497 - L1MEd LINE L1 -3627 2502 2333 1854 186 0 3 chr1 6802856 6803191 -235861162 - AluSx SINE Alu 0 312 1 647 261 75 37 chr1 6803191 6803388 -235860965 - L1MEd LINE L1 -3796 2333 2114 1561 95 0 14 chr1 6803734 6803945 -235860408 - AluSc SINE Alu 0 309 102 883 259 119 99 chr1 6803952 6804311 -235860042 - L1MEd LINE L1 -4957 1162 811 1151 115 8 111 chr1 6804311 6804545 -235859808 - L1PB4 LINE L1 -1 6155 5946 883 259 119 99 chr1 6804545 6804852 -235859501 - L1MEd LINE L1 -5308 811 511 405 0 0 0 chr1 6804852 6804897 -235859456 + (TC)n Simple_repeat Simple_repeat 2 46 0 2174 114 0 3 chr1 6804898 6805188 -235859165 - AluSq SINE Alu -24 289 1 883 259 119 99 chr1 6805188 6805395 -235858958 - L1MEd LINE L1 -5607 512 269 1262 176 38 0 chr1 6805429 6805639 -235858714 - MER58A DNA MER1_type -6 218 1 346 323 35 25 chr1 6805639 6805840 -235858513 - L1MEd LINE L1 -5874 245 43 2128 95 0 0 chr1 6805847 6806109 -235858244 - AluSc SINE Alu -47 262 1 741 177 8 0 chr1 6806109 6806233 -235858120 - L1MC3 LINE L1 -420 7365 7241 936 194 0 6 chr1 6806436 6806601 -235857752 + FAM SINE Alu 1 164 -11 1879 126 7 15 chr1 6806683 6806952 -235857401 - AluSx SINE Alu -45 267 1 2191 59 0 0 chr1 6806985 6807239 -235857114 + AluY SINE Alu 44 297 -14 2498 73 3 0 chr1 6807524 6807827 -235856526 + AluSp SINE Alu 1 304 -9 2028 116 26 0 chr1 6808360 6808662 -235855691 + AluSx SINE Alu 1 310 -2 709 93 19 0 chr1 6810233 6810340 -235854013 + L1MA2 LINE L1 6037 6145 -159 1311 59 24 0 chr1 6810401 6810571 -235853782 + L1MA3 LINE L1 6132 6305 0 6262 40 3 0 chr1 6810849 6811621 -235852732 - L1PA5 LINE L1 0 6154 5409 2158 129 0 3 chr1 6812150 6812460 -235851893 - AluSx SINE Alu -3 309 1 2067 123 4 0 chr1 6812510 6812786 -235851567 + AluSg SINE Alu 1 277 -33 261 0 0 0 chr1 6812788 6812817 -235851536 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 952 203 48 84 chr1 6812823 6813202 -235851151 - MLT1B LTR MaLR -25 365 1 1146 259 68 28 chr1 6813202 6813703 -235850650 + L2 LINE L2 2327 2847 -467 21 0 0 0 chr1 6813747 6813768 -235850585 + AT_rich Low_complexity Low_complexity 1 21 0 2246 81 3 27 chr1 6813769 6814065 -235850288 - AluSx SINE Alu -23 289 1 2006 141 0 34 chr1 6814065 6814249 -235850104 - AluJb SINE Alu -3 309 139 2360 94 0 0 chr1 6814249 6814546 -235849807 - AluSx SINE Alu -15 297 1 2006 141 0 34 chr1 6814546 6814681 -235849672 - AluJb SINE Alu -173 139 1 528 229 33 26 chr1 6814692 6814845 -235849508 - L1MB8 LINE L1 -3 6175 6022 2192 96 0 17 chr1 6814924 6815216 -235849137 + AluSq SINE Alu 23 309 -4 575 234 289 7 chr1 6815222 6815526 -235848827 + L2 LINE L2 2921 3310 -3 1513 170 69 24 chr1 6816037 6816325 -235848028 - AluJo SINE Alu -11 301 1 21 0 0 0 chr1 6816638 6816659 -235847694 + AT_rich Low_complexity Low_complexity 1 21 0 1947 127 0 0 chr1 6816676 6816935 -235847418 + AluSq SINE Alu 1 259 -54 2246 108 13 0 chr1 6817195 6817502 -235846851 - AluSx SINE Alu -1 311 1 1960 125 26 26 chr1 6817521 6817825 -235846528 - AluJb SINE Alu -8 304 1 566 286 171 26 chr1 6818003 6818223 -235846130 - L2 LINE L2 0 3313 3126 2149 120 0 7 chr1 6818223 6818524 -235845829 - AluSx SINE Alu -13 299 1 566 286 171 26 chr1 6818524 6818729 -235845624 - L2 LINE L2 -187 3126 2826 24 0 0 0 chr1 6818949 6818973 -235845380 + AT_rich Low_complexity Low_complexity 1 24 0 574 103 10 10 chr1 6819705 6819802 -235844551 + (TTCC)n Simple_repeat Simple_repeat 4 100 0 2352 100 3 6 chr1 6819803 6820114 -235844239 - AluSp SINE Alu -3 310 1 372 312 24 0 chr1 6820274 6820399 -235843954 + L2 LINE L2 3144 3271 -1 2290 102 0 7 chr1 6820415 6820720 -235843633 + AluSq SINE Alu 1 303 -10 2042 145 16 10 chr1 6821104 6821414 -235842939 - AluJb SINE Alu 0 312 1 669 200 23 8 chr1 6821506 6821636 -235842717 - AluJo SINE Alu -178 134 3 207 139 0 0 chr1 6821919 6821955 -235842398 + (TAG)n Simple_repeat Simple_repeat 1 36 0 1827 150 0 41 chr1 6821957 6822050 -235842303 + AluJb SINE Alu 1 96 -216 2321 105 0 16 chr1 6822050 6822364 -235841989 + AluSq SINE Alu 1 309 -4 1827 150 0 41 chr1 6822364 6822564 -235841789 + AluJb SINE Alu 96 282 -30 2149 110 0 0 chr1 6822581 6822901 -235841452 + AluSx SINE Alu 1 320 0 756 263 43 0 chr1 6822901 6823110 -235841243 - MIR SINE MIR -23 239 22 257 264 16 91 chr1 6823571 6823692 -235840661 + MER5C DNA MER1_type 8 119 -205 210 91 0 0 chr1 6823856 6823889 -235840464 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 185 255 0 0 chr1 6823891 6823938 -235840415 + MER5C DNA MER1_type 278 324 0 2018 103 26 36 chr1 6824023 6824325 -235840028 - AluSx SINE Alu -13 299 1 1127 167 112 73 chr1 6824354 6824641 -235839712 - AluJo SINE Alu -3 299 2 1026 128 116 6 chr1 6824799 6824971 -235839382 + AluJb SINE Alu 113 303 -9 723 176 57 23 chr1 6825108 6825284 -235839069 - MIR SINE MIR -14 248 67 2132 116 3 0 chr1 6825863 6826156 -235838197 - AluSx SINE Alu -18 294 1 2121 136 0 3 chr1 6826564 6826874 -235837479 + AluSx SINE Alu 1 309 -3 2332 101 51 28 chr1 6827138 6827494 -235836859 - THE1B LTR MaLR 0 364 1 2378 86 3 22 chr1 6827579 6827892 -235836461 - AluSp SINE Alu -6 307 1 339 259 44 38 chr1 6828014 6828172 -235836181 + L2 LINE L2 2623 2781 -533 273 119 0 0 chr1 6828422 6828464 -235835889 + (TCC)n Simple_repeat Simple_repeat 1 42 0 1298 129 0 0 chr1 6828464 6828642 -235835711 - AluSg/x SINE Alu -1 311 134 2237 124 0 0 chr1 6828642 6828948 -235835405 - AluSx SINE Alu -6 306 1 691 265 34 0 chr1 6829053 6829257 -235835096 + MIR SINE MIR 1 211 -51 2185 111 0 7 chr1 6829484 6829790 -235834563 - AluSx SINE Alu -8 304 1 2114 83 7 4 chr1 6829986 6830264 -235834089 + AluSx SINE Alu 1 279 -33 489 17 0 0 chr1 6830264 6830322 -235834031 + (CA)n Simple_repeat Simple_repeat 1 58 0 623 306 45 27 chr1 6830394 6830730 -235833623 - L1ME LINE L1 -380 5741 5400 2438 99 3 0 chr1 6830789 6831101 -235833252 - AluSq SINE Alu 0 313 1 216 0 0 0 chr1 6831213 6831237 -235833116 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4718 114 4 4 chr1 6831238 6831922 -235832431 - L1PA16 LINE L1 -13 6153 5470 762 100 0 0 chr1 6831922 6832022 -235832331 - FRAM SINE Alu -18 158 59 1986 116 0 58 chr1 6833023 6833333 -235831020 - AluSx SINE Alu -20 292 1 362 289 15 55 chr1 6833617 6833818 -235830535 + MIR SINE MIR 20 212 -50 1389 106 0 0 chr1 6833847 6834026 -235830327 - AluSx SINE Alu -133 179 1 222 188 0 42 chr1 6834037 6834085 -235830268 + L2 LINE L2 3175 3220 -93 385 242 73 16 chr1 6834201 6834325 -235830028 - L2 LINE L2 -1 3312 3182 2041 140 27 0 chr1 6834575 6834868 -235829485 - AluSx SINE Alu -11 301 1 197 281 18 0 chr1 6835014 6835071 -235829282 - L2 LINE L2 -2 3311 3254 2238 124 0 0 chr1 6835212 6835519 -235828834 - AluSx SINE Alu -5 307 1 888 117 0 0 chr1 6835910 6836030 -235828323 + AluSq/x SINE Alu 1 120 -192 198 0 0 0 chr1 6836031 6836053 -235828300 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 2386 115 0 0 chr1 6836249 6836561 -235827792 + AluSx SINE Alu 1 312 0 2199 117 7 0 chr1 6836588 6836897 -235827456 + AluSx SINE Alu 1 311 -1 3775 139 78 27 chr1 6836897 6837484 -235826869 + L1MA4 LINE L1 5044 5700 -600 2110 141 3 0 chr1 6837484 6837789 -235826564 + AluSx SINE Alu 1 306 -6 3775 139 78 27 chr1 6837789 6838152 -235826201 + L1MA4 LINE L1 5700 6043 -257 1246 71 88 6 chr1 6838161 6838331 -235826022 - MER84 LTR ERVI 0 507 324 871 70 0 0 chr1 6838331 6838446 -235825907 + MER84-int LTR ERV1 1242 1356 -3598 753 83 148 0 chr1 6838446 6838554 -235825799 - MER84 LTR ERVI -383 124 1 1140 171 25 25 chr1 6838554 6838793 -235825560 + L1MA4 LINE L1 6054 6292 -8 21 0 0 0 chr1 6840447 6840468 -235823885 + AT_rich Low_complexity Low_complexity 1 21 0 1681 164 39 4 chr1 6840784 6841065 -235823288 - AluJb SINE Alu -15 297 7 1977 128 30 3 chr1 6841079 6841383 -235822970 - AluSx SINE Alu 0 312 1 2220 106 7 3 chr1 6841528 6841820 -235822533 - AluSg1 SINE Alu -16 293 1 647 233 158 0 chr1 6841919 6842121 -235822232 - MIR SINE MIR -21 241 8 470 289 130 36 chr1 6842232 6842509 -235821844 - L1MC/D LINE L1 -2097 5711 5409 338 259 43 26 chr1 6842567 6842683 -235821670 + MER94 DNA DNA 1 118 -16 974 176 0 0 chr1 6842801 6842949 -235821404 + FRAM SINE Alu 1 146 -30 303 266 0 0 chr1 6843334 6843413 -235820940 + (TGGG)n Simple_repeat Simple_repeat 3 81 0 913 198 48 0 chr1 6843509 6843696 -235820657 - AluJb SINE Alu -4 308 113 1697 138 20 79 chr1 6844123 6844428 -235819925 + AluJo SINE Alu 1 287 -25 4428 111 33 6 chr1 6844504 6845195 -235819158 - L1MA5A LINE L1 -1 6296 5587 1683 188 0 7 chr1 6845344 6845636 -235818717 + AluJo SINE Alu 1 290 -22 2193 125 16 0 chr1 6845735 6846040 -235818313 + AluSg SINE Alu 1 310 0 2040 151 0 3 chr1 6846225 6846523 -235817830 - AluSx SINE Alu -15 297 1 271 312 72 8 chr1 6846826 6846951 -235817402 - L1MC/D LINE L1 -1949 5859 5727 2311 92 3 0 chr1 6847291 6847584 -235816769 - AluSg SINE Alu -16 294 1 1666 166 17 40 chr1 6847615 6847916 -235816437 + AluJo SINE Alu 1 294 -18 2411 60 0 0 chr1 6849357 6849669 -235814684 + AluSq SINE Alu 1 312 0 192 152 0 0 chr1 6849681 6849714 -235814639 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 1566 159 31 31 chr1 6849886 6850176 -235814177 + AluJo SINE Alu 1 290 -22 342 60 0 20 chr1 6850281 6850331 -235814022 - MADE1 DNA Mariner 0 80 32 936 146 0 0 chr1 6850333 6850463 -235813890 + AluSx SINE Alu 6 135 -178 1948 114 10 40 chr1 6850463 6850762 -235813591 + AluSx SINE Alu 1 290 -22 307 146 427 0 chr1 6850766 6850848 -235813505 + Charlie1 DNA MER1_type 2642 2758 -3 1940 91 4 0 chr1 6851197 6851449 -235812904 + AluSq SINE Alu 60 312 -1 1417 89 0 6 chr1 6851449 6851629 -235812724 + AluSx SINE Alu 118 296 -14 1723 157 0 57 chr1 6851730 6852048 -235812305 + AluJo SINE Alu 1 300 -12 2275 116 7 0 chr1 6852051 6852361 -235811992 + AluSx SINE Alu 1 312 0 2029 128 6 16 chr1 6852391 6852703 -235811650 + AluSx SINE Alu 1 309 -3 189 238 181 29 chr1 6854238 6854343 -235810010 + L2 LINE L2 3190 3310 -3 1976 148 3 3 chr1 6855224 6855529 -235808824 + AluJb SINE Alu 1 305 -7 453 291 137 24 chr1 6855708 6856000 -235808353 + L2 LINE L2 2989 3313 0 242 309 0 0 chr1 6856054 6856135 -235808218 + MIR SINE MIR 59 139 -123 362 192 68 89 chr1 6856264 6856410 -235807943 + MIR SINE MIR 95 237 -25 796 249 86 20 chr1 6856903 6857148 -235807205 + MIR SINE MIR 2 262 0 2222 102 31 0 chr1 6857958 6858251 -235806102 + AluSp SINE Alu 1 302 -11 192 40 0 0 chr1 6858255 6858280 -235806073 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 189 303 146 18 chr1 6859795 6859960 -235804393 - L2 LINE L2 -903 2411 2226 27 0 0 0 chr1 6860411 6860438 -235803915 + GC_rich Low_complexity Low_complexity 1 27 0 364 188 188 62 chr1 6861730 6861858 -235802495 - L2 LINE L2 -2 3270 3127 317 301 46 25 chr1 6867720 6867852 -235796501 + MIR SINE MIR 23 153 -55 268 309 147 16 chr1 6868327 6868518 -235795835 - L2 LINE L2 -550 2764 2549 2052 100 0 45 chr1 6869175 6869484 -235794869 - AluSp SINE Alu -18 295 1 2131 122 17 0 chr1 6869697 6869993 -235794360 - AluSx SINE Alu -11 301 1 1362 170 38 88 chr1 6870000 6870318 -235794035 - LTR9 LTR ERV1 -310 302 1 627 195 118 99 chr1 6870330 6870737 -235793616 + LTR48 LTR ERV1 173 787 0 1957 97 7 70 chr1 6870870 6871169 -235793184 + AluSx SINE Alu 1 280 -32 2027 111 0 28 chr1 6871552 6871871 -235792482 - AluSx SINE Alu 0 311 1 589 182 10 0 chr1 6871871 6871970 -235792383 - FLAM_A SINE Alu -8 134 35 415 141 33 11 chr1 6871979 6872071 -235792282 - AluSc SINE Alu -14 295 202 232 139 0 0 chr1 6972071 6972107 -235692246 - FLAM_A SINE Alu -103 36 1 295 79 0 111 chr1 6972107 6972170 -235692183 + L1MA8 LINE L1 6125 6180 -111 2210 94 0 0 chr1 6972183 6972471 -235691882 + AluY SINE Alu 1 288 -23 232 294 12 24 chr1 6972609 6972694 -235691659 - MLT1K LTR MaLR -494 94 11 2293 98 0 0 chr1 6972701 6973003 -235691350 + AluSx SINE Alu 3 297 -15 963 96 15 3 chr1 6973136 6973281 -235691072 - FRAM SINE Alu -30 146 18 1587 176 39 33 chr1 6973424 6973731 -235690622 + AluJb SINE Alu 1 309 -3 1273 157 0 32 chr1 6973746 6973963 -235690390 + AluJo SINE Alu 1 210 -102 1429 84 0 31 chr1 6973979 6974170 -235690183 - AluSq SINE Alu -52 261 77 889 143 27 27 chr1 6974172 6974319 -235690034 + AluJo/FRAM SINE Alu 156 302 -10 793 117 14 34 chr1 6974372 6974812 -235689541 + (TG)n Simple_repeat Simple_repeat 1 431 0 967 76 45 7 chr1 6974830 6975462 -235688891 + (TG)n Simple_repeat Simple_repeat 1 831 0 739 208 79 82 chr1 6975462 6975920 -235688433 - MLT2B1 LTR ERVL -40 449 1 739 293 18 71 chr1 6975990 6976287 -235688066 - ERVL LTR ERVL -2577 3187 2913 2501 78 0 0 chr1 6976287 6976596 -235687757 + AluSg SINE Alu 1 309 -1 739 293 18 71 chr1 6976596 6976680 -235687673 - ERVL LTR ERVL -2851 2913 2826 2514 58 0 0 chr1 6976804 6977097 -235687256 + AluY SINE Alu 1 293 -18 1854 148 11 0 chr1 6977096 6977374 -235686979 - AluJb SINE Alu -31 281 1 * 1521 155 0 0 chr1 6978420 6978646 -235685707 - AluJb SINE Alu -9 303 78 1904 112 94 0 chr1 6979258 6979535 -235684818 + AluSx SINE Alu 1 303 -9 304 181 24 0 chr1 6979634 6979717 -235684636 + (TA)n Simple_repeat Simple_repeat 1 85 0 303 28 0 0 chr1 6979768 6979804 -235684549 + (CA)n Simple_repeat Simple_repeat 2 37 0 938 159 62 46 chr1 6979813 6980111 -235684242 + MER21A LTR ERV1 34 356 -507 2139 103 0 0 chr1 6980135 6980408 -235683945 + AluSx SINE Alu 25 297 -15 1836 146 25 0 chr1 6980461 6980735 -235683618 - AluJb SINE Alu -31 281 1 2522 86 0 0 chr1 6981741 6982054 -235682299 + AluSq SINE Alu 1 313 0 295 308 75 51 chr1 6982063 6982277 -235682076 - L2 LINE L2 -530 2784 2566 1787 147 40 3 chr1 6982845 6983145 -235681208 + AluJb SINE Alu 1 311 -1 2511 70 0 3 chr1 6983610 6983911 -235680442 + AluSp SINE Alu 1 300 -13 1204 113 24 0 chr1 6983911 6984079 -235680274 + AluSp SINE Alu 134 305 -8 2709 94 13 8 chr1 6984232 6984605 -235679748 + THE1C LTR MaLR 1 375 0 3631 109 73 23 chr1 6984948 6984978 -235679375 + LTR24C LTR ERV1 1 28 -607 828 99 7 92 chr1 6984978 6985119 -235679234 + FLAM_C SINE Alu 5 133 0 3631 109 73 23 chr1 6985119 6985691 -235678662 + LTR24C LTR ERV1 28 633 -2 2290 103 0 3 chr1 6985765 6986067 -235678286 + AluSq SINE Alu 1 301 -12 385 136 61 0 chr1 6986215 6986281 -235678072 - Charlie4 DNA MER1_type -5 1956 1887 2106 103 17 3 chr1 6986288 6986579 -235677774 + AluSc SINE Alu 1 295 -14 1042 84 15 0 chr1 6986579 6986710 -235677643 + AluSq/x SINE Alu 1 133 -180 354 175 10 21 chr1 6987033 6987130 -235677223 + (TA)n Simple_repeat Simple_repeat 2 97 0 304 196 0 0 chr1 6987171 6987227 -235677126 + L1MC4 LINE L1 6648 6703 -1339 2249 110 3 0 chr1 6987230 6987538 -235676815 - AluSp SINE Alu -3 310 2 623 140 0 10 chr1 6987678 6987778 -235676575 - AluSp/q SINE Alu -15 298 200 1869 126 27 33 chr1 6987937 6988238 -235676115 - AluSx SINE Alu -13 299 1 1978 135 17 7 chr1 6988267 6988563 -235675790 + AluY SINE Alu 1 299 -12 780 68 0 0 chr1 6989022 6989125 -235675228 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 484 173 0 17 chr1 6989322 6989421 -235674932 - L1MC4 LINE L1 0 8042 7848 207 319 87 0 chr1 6989493 6989562 -235674791 + MIR SINE MIR 71 145 -63 1094 168 84 26 chr1 6989732 6989958 -235674395 - AluJb SINE Alu -2 310 72 205 350 150 0 chr1 6990689 6990789 -235673564 + L2 LINE L2 3123 3237 -35 186 43 0 0 chr1 6991162 6991185 -235673168 + (T)n Simple_repeat Simple_repeat 1 23 0 2317 95 0 10 chr1 6991285 6991589 -235672764 - AluSc SINE Alu -6 303 3 483 33 0 0 chr1 6991902 6991963 -235672390 + (TG)n Simple_repeat Simple_repeat 2 62 0 414 0 0 0 chr1 6992027 6992073 -235672280 + (TG)n Simple_repeat Simple_repeat 1 46 0 2130 127 7 0 chr1 6992382 6992682 -235671671 + AluSx SINE Alu 1 302 -10 2266 64 0 0 chr1 6992683 6992950 -235671403 + AluY SINE Alu 38 304 -7 2030 154 28 11 chr1 6993397 6993753 -235670600 - THE1B LTR MaLR 0 364 3 1925 156 0 13 chr1 6996310 6996611 -235667742 + AluJb SINE Alu 1 297 -15 1420 221 7 29 chr1 6996890 6997198 -235667155 + AluJo SINE Alu 1 301 -1 445 168 262 54 chr1 6997503 6997652 -235666701 - MER58B DNA MER1_type 0 341 162 284 134 34 84 chr1 6998141 6998260 -235666093 + A-rich Low_complexity Low_complexity 4 116 0 1892 143 10 13 chr1 6998526 6998826 -235665527 - AluJo SINE Alu -13 299 1 21 0 0 0 chr1 6999026 6999047 -235665306 + AT_rich Low_complexity Low_complexity 1 21 0 403 272 7 51 chr1 6999441 6999598 -235664755 + MIR SINE MIR 49 197 -65 388 239 111 0 chr1 6999886 7000003 -235664350 + MER5C DNA MER1_type 1 130 -194 2703 100 0 14 chr1 7000070 7000439 -235663914 - THE1B LTR MaLR 0 364 1 274 161 32 48 chr1 7000538 7000600 -235663753 - MLT1J LTR MaLR -450 61 1 721 189 0 0 chr1 7000975 7001097 -235663256 - FLAM_C SINE Alu -16 127 6 1829 151 0 20 chr1 7001130 7001435 -235662918 + AluJb SINE Alu 1 299 -13 183 80 0 0 chr1 7002248 7002273 -235662080 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1974 220 53 19 chr1 7003561 7004034 -235660319 - LTR42 LTR ERVL 0 495 7 211 262 213 16 chr1 7004040 7004162 -235660191 + L2 LINE L2 3168 3313 0 2050 137 3 3 chr1 7004245 7004544 -235659809 - AluSx SINE Alu -13 299 1 2150 134 0 0 chr1 7004554 7004860 -235659493 - AluSx SINE Alu -6 306 1 455 217 25 17 chr1 7005575 7005695 -235658658 + L2 LINE L2 3193 3313 0 336 275 75 8 chr1 7006385 7006505 -235657848 - MIR SINE MIR -112 150 23 318 218 137 48 chr1 7007210 7007334 -235657019 - L1ME3A LINE L1 0 6170 6036 2116 247 96 50 chr1 7007473 7008496 -235655857 - L1MC5 LINE L1 -431 7530 6476 2009 128 10 7 chr1 7008537 7008834 -235655519 - AluSx SINE Alu -12 300 3 1520 181 40 14 chr1 7009150 7009426 -235654927 - AluJo SINE Alu -27 285 3 42 20 0 0 chr1 7009984 7010033 -235654320 + AT_rich Low_complexity Low_complexity 1 49 0 1221 117 6 0 chr1 7010962 7011133 -235653220 - AluSq SINE Alu -12 301 130 961 162 56 178 chr1 7011167 7011488 -235652865 + AluJo SINE Alu 1 282 -30 21 36 0 0 chr1 7011488 7011516 -235652837 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 7011741 7011764 -235652589 + AT_rich Low_complexity Low_complexity 1 23 0 1120 213 138 27 chr1 7011962 7012673 -235651680 + L1ME1 LINE L1 4826 5621 -543 1370 141 89 56 chr1 7012710 7012979 -235651374 + AluJb SINE Alu 11 288 -24 319 189 0 40 chr1 7013003 7013077 -235651276 + L1ME2 LINE L1 5978 6048 -116 2088 122 7 7 chr1 7013677 7013980 -235650373 - AluSx SINE Alu -9 303 1 2018 126 14 0 chr1 7015595 7015889 -235648464 - AluSx SINE Alu -14 298 1 23 33 0 0 chr1 7016465 7016495 -235647858 + AT_rich Low_complexity Low_complexity 1 30 0 2349 63 23 3 chr1 7016511 7016813 -235647540 - AluY SINE Alu -2 309 2 522 308 100 21 chr1 7016815 7017055 -235647298 - L1MC5 LINE L1 -2147 5661 5403 1207 249 84 40 chr1 7017476 7018013 -235646340 - L1MC4 LINE L1 -113 7695 7244 1383 158 83 18 chr1 7018013 7018139 -235646214 + AluJo SINE Alu 5 121 -191 252 0 0 0 chr1 7018139 7018167 -235646186 + (TA)n Simple_repeat Simple_repeat 2 29 0 1383 158 83 18 chr1 7018167 7018318 -235646035 + AluJo SINE Alu 121 300 -12 1207 249 84 40 chr1 7018318 7018402 -235645951 - L1MC4 LINE L1 -564 7244 7165 476 235 95 40 chr1 7018410 7018610 -235645743 - L1MC4 LINE L1 -958 7084 6874 877 259 114 21 chr1 7018774 7019106 -235645247 - L1ME3A LINE L1 -10 6160 5798 2146 55 0 12 chr1 7019106 7019361 -235644992 + AluY SINE Alu 52 303 -8 775 257 32 48 chr1 7019361 7019596 -235644757 + L1M4 LINE L1 2722 2952 -3194 1992 132 14 0 chr1 7019596 7019885 -235644468 + AluJb SINE Alu 1 293 -19 775 257 32 48 chr1 7019885 7019964 -235644389 + L1M4 LINE L1 2952 3031 -3115 422 358 59 4 chr1 7020080 7020334 -235644019 + L1ME1 LINE L1 5680 5947 -223 448 242 17 50 chr1 7020967 7021087 -235643266 + L2 LINE L2 3182 3297 -16 607 146 62 31 chr1 7021450 7021580 -235642773 + L1ME1 LINE L1 6027 6160 -6 1367 170 77 64 chr1 7023003 7023342 -235641011 + Charlie1b DNA MER1_type 57 405 -2356 2357 86 16 0 chr1 7023342 7023645 -235640708 - AluSc SINE Alu -1 308 1 1367 170 77 64 chr1 7023645 7023759 -235640594 + Charlie1b DNA MER1_type 405 516 -7 1715 209 0 0 chr1 7023796 7024092 -235640261 - AluJo SINE Alu -16 296 1 198 296 136 0 chr1 7024653 7024778 -235639575 - L3 LINE CR1 -710 867 726 325 96 19 180 chr1 7024784 7024941 -235639412 - MLT2B3 LTR ERVL 0 554 393 1284 196 151 16 chr1 7024941 7025318 -235639035 - MSTC LTR MaLR 0 428 1 * 2228 197 23 7 chr1 7025318 7025752 -235638601 - MLT2B3 LTR ERVL -107 447 7 190 235 0 39 chr1 7025882 7025933 -235638420 - MIR3 SINE MIR -32 176 128 2192 105 3 0 chr1 7026614 7026910 -235637443 + AluY SINE Alu 1 297 -14 2362 98 0 0 chr1 7027058 7027363 -235636990 - AluSg1 SINE Alu -4 305 1 2206 99 0 13 chr1 7027972 7028276 -235636077 - AluSq SINE Alu -11 302 3 2529 181 87 12 chr1 7028361 7028831 -235635522 - L1MA7 LINE L1 0 6291 5759 543 69 0 0 chr1 7028831 7028903 -235635450 + (CA)n Simple_repeat Simple_repeat 2 73 0 2529 181 87 12 chr1 7028903 7029074 -235635279 - L1MA7 LINE L1 -532 5759 5602 452 162 253 0 chr1 7029177 7029276 -235635077 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 1242 114 5 5 chr1 7029279 7029480 -235634873 + Tigger4(Zombi) DNA MER2_type 2531 2731 0 1027 157 67 17 chr1 7031018 7031225 -235633128 + AluJo SINE Alu 96 311 0 740 188 91 23 chr1 7031619 7031795 -235632558 - MIR SINE MIR -54 208 21 323 324 153 0 chr1 7033006 7033182 -235631171 - MIR SINE MIR -6 256 54 1106 171 23 14 chr1 7033313 7033529 -235630824 + MER20 DNA MER1_type 1 218 -1 372 107 18 0 chr1 7033731 7033787 -235630566 - MER34C LTR ERV1 -492 93 37 1463 87 0 0 chr1 7034398 7034583 -235629770 - AluSp SINE Alu -6 307 123 2185 114 3 13 chr1 7034604 7034919 -235629434 + AluSx SINE Alu 1 312 0 290 305 28 21 chr1 7036453 7036594 -235627759 - MIR3 SINE MIR -53 155 14 205 205 0 0 chr1 7036634 7036673 -235627680 + T-rich Low_complexity Low_complexity 1 39 0 336 193 0 0 chr1 7037552 7037609 -235626744 + AluJ/FLAM SINE Alu 1 57 -245 274 270 27 18 chr1 7037668 7037779 -235626574 + L1MC4 LINE L1 7914 8025 -17 1070 195 69 8 chr1 7038319 7038580 -235625773 - MER58 DNA MER1_type -2140 280 4 1983 162 26 0 chr1 7038995 7039298 -235625055 - AluJo SINE Alu -1 311 1 2079 107 3 30 chr1 7039508 7039807 -235624546 - AluSx SINE Alu -21 291 1 219 286 79 0 chr1 7041923 7041986 -235622367 - MIR SINE MIR -161 101 34 2355 83 0 3 chr1 7042855 7043178 -235621175 + AluSx SINE Alu 1 312 0 6027 239 100 29 chr1 7043508 7044701 -235619652 - L1MC4a LINE L1 -1 7807 6700 2124 114 0 7 chr1 7044701 7045000 -235619353 - AluSg1 SINE Alu -12 297 1 6027 239 100 29 chr1 7045000 7046177 -235618176 - L1MC4a LINE L1 -1108 6700 5269 382 305 58 13 chr1 7046199 7046353 -235618000 - L1MC4a LINE L1 -913 5233 5073 256 273 76 30 chr1 7046578 7046776 -235617577 - L1P LINE L1 -1488 4658 4452 2168 127 13 0 chr1 7046829 7047137 -235617216 - AluSx SINE Alu 0 312 1 205 0 54 54 chr1 7047385 7047422 -235616931 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1723 189 30 0 chr1 7047424 7047720 -235616633 + AluJb SINE Alu 3 307 -5 2276 113 0 3 chr1 7047720 7048020 -235616333 + AluSg SINE Alu 1 299 -11 44 0 0 0 chr1 7048020 7048064 -235616289 + AT_rich Low_complexity Low_complexity 1 44 0 238 304 108 0 chr1 7048159 7048261 -235616092 + Charlie2a DNA MER1_type 16 128 -2654 517 296 101 20 chr1 7048344 7048689 -235615664 + Charlie2a DNA MER1_type 262 634 -2228 1155 201 145 15 chr1 7048958 7049352 -235615001 - L1ME2 LINE L1 -24 6140 5696 333 132 9 0 chr1 7049472 7049528 -235614825 + L1M4 LINE L1 3773 3832 -2314 337 218 135 23 chr1 7049625 7049758 -235614595 + L1M4 LINE L1 4020 4167 -1979 812 190 71 16 chr1 7049924 7050108 -235614245 + MER20 DNA MER1_type 26 219 0 453 183 11 21 chr1 7050587 7050634 -235613719 + MER3 DNA MER1_type 2 47 -162 391 204 7 120 chr1 7050634 7050776 -235613577 - MER3 DNA MER1_type 0 209 84 929 176 7 0 chr1 7050897 7051045 -235613308 + AluJo SINE Alu 1 149 -163 638 186 0 25 chr1 7051045 7051163 -235613190 - AluJb SINE Alu -197 115 1 240 35 0 0 chr1 7052541 7052570 -235611783 + (TG)n Simple_repeat Simple_repeat 2 30 0 1599 147 0 63 chr1 7053290 7053590 -235610763 + AluJb SINE Alu 1 281 -31 235 0 57 0 chr1 7053598 7053633 -235610720 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2245 116 3 3 chr1 7053999 7054309 -235610044 + AluSg SINE Alu 1 310 0 803 287 40 12 chr1 7056117 7056445 -235607908 + MER46C DNA MER2_type 2 338 0 1650 191 0 3 chr1 7056483 7056781 -235607572 - AluJb SINE Alu -14 298 2 324 272 48 16 chr1 7057354 7057479 -235606874 + MIR SINE MIR 31 159 -103 2428 71 0 0 chr1 7057581 7057877 -235606476 - AluSc SINE Alu -13 296 1 217 286 0 0 chr1 7057901 7057950 -235606403 + CT-rich Low_complexity Low_complexity 3 51 0 1592 218 102 54 chr1 7058188 7058546 -235605807 - L1MC4 LINE L1 -149 7893 7491 640 186 0 161 chr1 7058546 7058745 -235605608 - FAM SINE Alu -8 167 1 1592 218 102 54 chr1 7058745 7059011 -235605342 - L1MC4 LINE L1 -551 7491 7239 613 262 87 12 chr1 7059012 7059421 -235604932 - L1MC4 LINE L1 -961 7081 6469 409 328 64 23 chr1 7060104 7060369 -235603984 + L1MEd LINE L1 538 813 -5306 418 286 135 33 chr1 7060379 7060624 -235603729 - MLT1J LTR MaLR -55 456 187 1930 126 7 48 chr1 7060671 7060808 -235603545 + AluSx SINE Alu 1 121 -191 2214 100 3 10 chr1 7060808 7061107 -235603246 + AluSq SINE Alu 1 297 -16 1930 126 7 48 chr1 7061107 7061263 -235603090 + AluSx SINE Alu 121 282 -30 352 309 103 17 chr1 7061345 7061509 -235602844 + L1 LINE L1 3595 3768 -2378 1533 110 53 8 chr1 7061629 7061893 -235602460 - L1MA2 LINE L1 0 6304 6029 251 302 26 73 chr1 7061896 7062088 -235602265 + L1 LINE L1 3908 4090 -2056 1579 181 43 0 chr1 7062245 7062526 -235601827 - AluSx SINE Alu -15 297 5 846 95 0 0 chr1 7062569 7062695 -235601658 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 2892 9 0 0 chr1 7062712 7063028 -235601325 + AluYb8 SINE Alu 1 316 -2 2306 82 0 35 chr1 7064103 7064418 -235599935 + AluY SINE Alu 1 304 -7 21 0 0 0 chr1 7064464 7064485 -235599868 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 11 33 chr1 7064514 7064604 -235599749 - L1MC4 LINE L1 -29 8013 7926 1062 150 0 0 chr1 7064656 7064829 -235599524 + MER46B DNA MER2_type 2 49 -187 1354 221 66 48 chr1 7064880 7064915 -235599438 - L1MC4 LINE L1 -98 7944 7911 824 180 97 61 chr1 7064915 7065143 -235599210 - MER46A DNA MER2_type 0 236 1 1354 221 66 48 chr1 7065143 7065622 -235598731 - L1MC4 LINE L1 -131 7911 7421 1728 137 19 60 chr1 7070490 7070805 -235593548 - AluJb SINE Alu -10 302 1 2259 110 0 3 chr1 7070815 7071115 -235593238 - AluSq SINE Alu -14 299 1 265 248 142 35 chr1 7071759 7071900 -235592453 + L2 LINE L2 3158 3313 0 433 259 132 48 chr1 7071909 7072137 -235592216 + MIR SINE MIR 14 260 -2 32 0 0 0 chr1 7072196 7072228 -235592125 + AT_rich Low_complexity Low_complexity 1 32 0 658 193 0 0 chr1 7072236 7072345 -235592008 - FLAM_C SINE Alu -34 109 1 198 0 0 0 chr1 7072928 7072950 -235591403 + (T)n Simple_repeat Simple_repeat 1 22 0 246 326 44 37 chr1 7073386 7073521 -235590832 + MIR3 SINE MIR 72 207 -1 220 200 0 0 chr1 7073605 7073650 -235590703 + T-rich Low_complexity Low_complexity 4 48 0 221 357 12 12 chr1 7073867 7073951 -235590402 - L2 LINE L2 -73 3199 3116 234 333 78 7 chr1 7074094 7074235 -235590118 - MIR SINE MIR -38 224 74 1092 145 12 6 chr1 7074264 7074436 -235589917 - AluJo SINE Alu -22 290 118 808 174 0 28 chr1 7074465 7074609 -235589744 - FLAM_C SINE Alu -2 141 2 207 100 0 0 chr1 7074750 7074780 -235589573 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 251 234 0 0 chr1 7074781 7074828 -235589525 - MER66A LTR ERV1 -142 336 290 237 179 45 60 chr1 7076506 7076573 -235587780 - L1MD3 LINE L1 -11 7984 7919 * 256 271 0 0 chr1 7076562 7076621 -235587732 - L1MD2 LINE L1 -103 6256 6198 958 234 102 0 chr1 7076624 7076880 -235587473 - L1MD2 LINE L1 -216 6143 5862 765 262 24 36 chr1 7077037 7077289 -235587064 + MIR SINE MIR 14 262 0 208 225 300 0 chr1 7077332 7077412 -235586941 + MIR SINE MIR 159 262 0 1734 149 19 38 chr1 7077455 7077770 -235586583 - AluSx SINE Alu -3 309 1 207 0 0 0 chr1 7078041 7078064 -235586289 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1690 118 110 0 chr1 7078066 7078329 -235586024 - AluSx SINE Alu -20 292 1 1517 151 61 29 chr1 7078331 7078609 -235585744 - AluJo SINE Alu -18 294 8 228 175 222 0 chr1 7078722 7078785 -235585568 + MIR SINE MIR 186 262 0 2092 128 6 6 chr1 7078944 7079257 -235585096 - AluSq SINE Alu 0 313 1 3900 194 69 35 chr1 7079298 7079899 -235584454 + Charlie1 DNA MER1_type 1682 2329 -432 1836 124 0 4 chr1 7079899 7080180 -235584173 - AluSq SINE Alu 0 308 29 3900 194 69 35 chr1 7080180 7080513 -235583840 + Charlie1 DNA MER1_type 2329 2649 -112 21 0 0 0 chr1 7080525 7080546 -235583807 + AT_rich Low_complexity Low_complexity 1 21 0 297 120 0 0 chr1 7081255 7081305 -235583048 + Charlie1 DNA MER1_type 2706 2755 -6 2986 6 0 0 chr1 7081372 7081690 -235582663 + AluYb8 SINE Alu 1 318 0 201 74 0 0 chr1 7081911 7081938 -235582415 + (A)n Simple_repeat Simple_repeat 1 27 0 765 189 8 0 chr1 7082655 7082782 -235581571 + FLAM_C SINE Alu 5 132 -1 309 178 22 22 chr1 7083583 7083673 -235580680 + CT-rich Low_complexity Low_complexity 1 90 0 1643 159 52 3 chr1 7083890 7084179 -235580174 - AluJo SINE Alu -9 303 1 347 197 45 0 chr1 7084180 7084246 -235580107 + L2 LINE L2 3232 3300 -13 447 68 0 0 chr1 7084246 7084305 -235580048 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 1512 130 25 105 chr1 7084458 7084782 -235579571 + AluYb8 SINE Alu 1 298 -20 2064 148 52 27 chr1 7085232 7085636 -235578717 - L1MB3 LINE L1 -28 6155 5742 2228 117 3 3 chr1 7085666 7085974 -235578379 + AluSx SINE Alu 1 308 -4 2180 96 7 7 chr1 7085996 7086289 -235578064 + AluSx SINE Alu 1 293 -19 808 166 11 40 chr1 7086403 7086578 -235577775 - AluJb SINE Alu -6 306 137 433 242 45 32 chr1 7086755 7086912 -235577441 + MER104 DNA Tc2 6 164 -16 1782 156 25 0 chr1 7087886 7088161 -235576192 + AluJb SINE Alu 13 294 -18 1566 260 95 46 chr1 7088167 7088836 -235575517 - L1MC5 LINE L1 -36 7925 7215 2316 84 0 3 chr1 7088836 7089133 -235575220 - AluSg SINE Alu -14 296 1 1566 260 95 46 chr1 7089133 7089198 -235575155 - L1MC5 LINE L1 -746 7215 7155 779 281 38 61 chr1 7089263 7089948 -235574405 - L1MC5 LINE L1 -850 6958 6281 1888 232 56 52 chr1 7090021 7090567 -235573786 - L1MC5 LINE L1 -1862 5946 5394 6285 77 17 45 chr1 7090567 7092186 -235572167 - SVA Other Other -589 1386 213 1888 232 56 52 chr1 7092186 7092267 -235572086 - L1MC5 LINE L1 -2414 5394 5315 181 218 109 0 chr1 7092321 7092376 -235571977 - L2 LINE L2 -12 3260 3200 2150 101 0 3 chr1 7092415 7092743 -235571610 - AluSx SINE Alu 0 327 1 340 272 103 22 chr1 7092925 7093109 -235571244 + Charlie8 DNA MER1_type 15 213 -2204 367 218 26 0 chr1 7093166 7093244 -235571109 + MER33 DNA MER1_type 1 80 -244 339 224 0 0 chr1 7093246 7093322 -235571031 + MER33 DNA MER1_type 249 324 0 442 296 118 39 chr1 7093598 7093801 -235570552 - L1ME2 LINE L1 0 6164 5946 333 0 0 0 chr1 7093811 7093848 -235570505 + (TG)n Simple_repeat Simple_repeat 2 38 0 2458 103 0 0 chr1 7093857 7094167 -235570186 - AluSx SINE Alu -2 310 1 183 100 0 0 chr1 7094189 7094219 -235570134 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 2093 109 0 7 chr1 7094219 7094502 -235569851 - AluSg1 SINE Alu -28 281 1 1262 98 5 16 chr1 7095524 7095708 -235568645 + L1PA8 LINE L1 5991 6172 0 1202 148 0 68 chr1 7096062 7096299 -235568054 - AluJo SINE Alu 0 312 92 1419 188 90 4 chr1 7096411 7096688 -235567665 - AluJo SINE Alu -11 301 1 2211 118 10 0 chr1 7096971 7097268 -235567085 + AluSx SINE Alu 3 302 -10 351 244 44 67 chr1 7097788 7097844 -235566509 - MIR SINE MIR -48 214 158 2193 82 65 0 chr1 7097844 7098136 -235566217 - AluY SINE Alu 0 311 1 351 244 44 67 chr1 7098136 7098214 -235566139 - MIR SINE MIR -104 158 83 202 283 75 0 chr1 7098889 7098942 -235565411 - L3 LINE CR1 -21 1556 1500 238 189 257 27 chr1 7099296 7099370 -235564983 - MIR3 SINE MIR -25 183 93 1597 168 0 82 chr1 7099477 7099662 -235564691 - AluJb SINE Alu -11 301 153 1545 173 20 47 chr1 7099662 7099963 -235564390 - AluJb SINE Alu -19 293 1 1597 168 0 82 chr1 7099963 7100105 -235564248 - AluJb SINE Alu -159 153 1 1092 146 5 66 chr1 7100938 7101119 -235563234 - AluJb SINE Alu 0 312 140 2310 89 23 0 chr1 7101119 7101422 -235562931 - AluSp SINE Alu -3 310 1 1092 146 5 66 chr1 7101422 7101471 -235562882 - AluJb SINE Alu -172 140 90 3690 235 111 64 chr1 7101600 7102207 -235562146 - L1ME1 LINE L1 -6 6160 5583 2063 90 62 7 chr1 7102207 7102497 -235561856 - AluSc SINE Alu 0 309 4 3690 235 111 64 chr1 7102497 7102511 -235561842 - L1ME1 LINE L1 -583 5583 5571 2408 70 0 13 chr1 7102511 7102812 -235561541 - AluY SINE Alu -14 297 1 3690 235 111 64 chr1 7102812 7103199 -235561154 - L1ME1 LINE L1 -595 5571 5203 1595 154 41 69 chr1 7103199 7103518 -235560835 - AluJo SINE Alu -2 310 1 3690 235 111 64 chr1 7103518 7104038 -235560315 - L1ME1 LINE L1 -963 5203 4708 2353 110 0 0 chr1 7104038 7104347 -235560006 + AluSq SINE Alu 4 312 -1 3690 235 111 64 chr1 7104347 7104479 -235559874 - L1ME1 LINE L1 -1458 4708 4584 712 169 7 70 chr1 7104479 7104621 -235559732 - FLAM_A SINE Alu 0 133 1 3690 235 111 64 chr1 7104621 7104986 -235559367 - L1ME1 LINE L1 -1582 4584 4237 1701 174 37 0 chr1 7104986 7105280 -235559073 - AluJb SINE Alu -7 305 1 3690 235 111 64 chr1 7105280 7105795 -235558558 - L1ME1 LINE L1 -1929 4237 3492 207 100 0 0 chr1 7105795 7105825 -235558528 + (T)n Simple_repeat Simple_repeat 1 30 0 1957 244 136 30 chr1 7105860 7106483 -235557870 - L1ME1 LINE L1 -2885 3261 2705 2413 80 0 3 chr1 7106483 7106784 -235557569 + AluSc SINE Alu 1 300 -9 1957 244 136 30 chr1 7106784 7107171 -235557182 - L1ME1 LINE L1 -3441 2705 2144 2157 114 3 0 chr1 7107211 7107501 -235556852 - AluSp SINE Alu -22 291 1 2127 112 10 0 chr1 7107858 7108152 -235556201 + AluSx SINE Alu 1 297 -15 24 32 0 0 chr1 7108153 7108184 -235556169 + AT_rich Low_complexity Low_complexity 1 31 0 240 313 15 0 chr1 7108907 7108974 -235555379 + L2 LINE L2 3205 3272 0 24 67 0 0 chr1 7109678 7109723 -235554630 + AT_rich Low_complexity Low_complexity 1 45 0 2362 88 7 10 chr1 7109873 7110181 -235554172 - AluY SINE Alu -4 307 1 859 162 0 13 chr1 7110399 7110553 -235553800 - L1MB8 LINE L1 -190 5988 5837 267 300 150 46 chr1 7110569 7110896 -235553457 - L3 LINE CR1 -422 1155 795 377 278 31 0 chr1 7110953 7111050 -235553303 - MIR SINE MIR -18 244 145 2253 96 3 0 chr1 7111167 7111460 -235552893 + AluSc SINE Alu 1 294 -15 2319 111 0 0 chr1 7111845 7112142 -235552211 + AluSx SINE Alu 1 297 -15 2315 111 0 0 chr1 7112145 7112452 -235551901 + AluSg SINE Alu 3 309 -1 1287 234 122 20 chr1 7112748 7113206 -235551147 - MLT1D LTR MaLR 0 505 1 54 40 0 0 chr1 7113217 7113292 -235551061 + AT_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr1 7113329 7113353 -235551000 + AT_rich Low_complexity Low_complexity 1 24 0 800 168 0 0 chr1 7113353 7113478 -235550875 - FLAM_C SINE Alu -18 125 1 271 288 158 17 chr1 7116276 7116453 -235547900 + MIR SINE MIR 52 253 -9 2327 108 0 16 chr1 7116869 7117185 -235547168 - AluSx SINE Alu -1 311 1 2333 100 0 0 chr1 7117190 7117489 -235546864 - AluSx SINE Alu -13 299 1 202 235 123 12 chr1 7119168 7119249 -235545104 + L2 LINE L2 3182 3271 -1 2200 118 0 0 chr1 7120469 7120757 -235543596 + AluSq SINE Alu 1 288 -25 1695 186 10 3 chr1 7120767 7121063 -235543290 + AluJo SINE Alu 1 298 -14 1003 174 60 5 chr1 7121068 7121269 -235543084 + AluJb SINE Alu 89 300 -12 293 164 75 15 chr1 7121280 7121347 -235543006 + L2 LINE L2 3201 3271 -1 2409 76 7 7 chr1 7121464 7121767 -235542586 + AluSc SINE Alu 1 303 -6 2168 86 38 3 chr1 7122028 7122318 -235542035 + AluSx SINE Alu 1 300 -12 2022 122 0 31 chr1 7122925 7123244 -235541109 - AluSg SINE Alu -1 309 1 744 278 5 5 chr1 7123450 7123641 -235540712 - MIR SINE MIR -59 203 13 1599 171 16 44 chr1 7123654 7123975 -235540378 - AluJb SINE Alu 0 312 1 32 43 0 0 chr1 7124369 7124415 -235539938 + AT_rich Low_complexity Low_complexity 1 46 0 2393 81 0 0 chr1 7124637 7124945 -235539408 + AluY SINE Alu 1 308 -3 203 231 154 51 chr1 7125030 7125147 -235539206 - L2 LINE L2 -5 3308 3180 296 235 59 0 chr1 7125398 7125466 -235538887 + L2 LINE L2 3190 3261 -52 500 232 120 21 chr1 7126063 7126205 -235538148 + MIR SINE MIR 44 199 -63 578 218 0 63 chr1 7127033 7127175 -235537178 - FLAM_A SINE Alu 0 133 1 399 288 297 10 chr1 7127635 7128294 -235536059 - L2 LINE L2 -1 3312 2459 676 160 25 8 chr1 7129671 7129820 -235534533 - FLAM_A SINE Alu 0 151 1 1185 162 0 40 chr1 7130513 7130741 -235533612 + AluJo SINE Alu 87 305 -7 237 108 0 0 chr1 7130784 7130821 -235533532 + (TCC)n Simple_repeat Simple_repeat 3 39 0 180 111 0 0 chr1 7133976 7134003 -235530350 + (TG)n Simple_repeat Simple_repeat 1 27 0 1892 144 7 0 chr1 7134680 7134979 -235529374 + AluSx SINE Alu 1 301 -11 1023 256 133 36 chr1 7135493 7135938 -235528415 - L2 LINE L2 0 3313 2826 226 358 51 7 chr1 7136760 7136897 -235527456 + L2 LINE L2 3170 3312 -1 514 101 0 0 chr1 7137270 7137349 -235527004 + AluJ/FRAM SINE Alu 232 310 -2 239 232 72 120 chr1 7137611 7137736 -235526617 + MIR3 SINE MIR 9 127 -81 2067 111 0 3 chr1 7137744 7138055 -235526298 - AluSg SINE Alu 0 310 2 2080 119 0 10 chr1 7138763 7139057 -235525296 - AluSx SINE Alu -21 291 1 195 341 24 0 chr1 7140382 7140467 -235523886 - L2 LINE L2 -205 3067 2981 383 226 57 28 chr1 7140753 7140859 -235523494 + MER5B DNA MER1_type 12 120 -58 200 260 244 65 chr1 7140951 7141074 -235523279 - MER5B DNA MER1_type -21 157 13 2188 106 0 3 chr1 7141131 7141433 -235522920 - AluSx SINE Alu -11 301 1 384 274 160 23 chr1 7142424 7142599 -235521754 - L2 LINE L2 -2 3311 3113 980 97 0 0 chr1 7143706 7143888 -235520465 - AluSg SINE Alu 0 327 146 212 216 0 0 chr1 7143907 7143944 -235520409 + L2 LINE L2 3230 3266 -6 1181 81 0 0 chr1 7143956 7144105 -235520248 - AluSg SINE Alu -161 149 1 186 270 0 0 chr1 7144387 7144424 -235519929 - L2 LINE L2 -6 3266 3230 6663 121 6 119 chr1 7144931 7145603 -235518750 + L1P LINE L1 826 1258 -4888 2187 63 20 20 chr1 7145603 7145906 -235518447 + AluY SINE Alu 1 303 -8 6663 121 6 119 chr1 7145906 7146634 -235517719 + L1P LINE L1 1258 2067 -4079 2026 58 4 8 chr1 7146631 7146889 -235517464 + L1PA7 LINE L1 5878 6134 -20 * 519 172 172 22 chr1 7147466 7147646 -235516707 - Charlie2 DNA MER1_type -31 2831 2625 2081 177 33 3 chr1 7147663 7148024 -235516329 - MSTA LTR MaLR -54 374 3 9117 168 33 12 chr1 7148026 7149102 -235515251 - MSTA-int LTR MaLR 0 1651 528 2037 107 33 3 chr1 7149102 7149401 -235514952 - AluSg SINE Alu -2 308 1 9117 168 33 12 chr1 7149401 7149941 -235514412 - MSTA-int LTR MaLR -1123 528 1 1326 159 14 0 chr1 7149944 7150151 -235514202 - MSTA LTR MaLR -3 425 216 619 237 93 34 chr1 7150151 7150176 -235514177 - Charlie2 DNA MER1_type -232 2630 2608 1894 133 10 17 chr1 7150176 7150478 -235513875 - AluSx SINE Alu -11 301 2 619 237 93 34 chr1 7150478 7150773 -235513580 - Charlie2 DNA MER1_type -254 2608 2291 890 261 53 0 chr1 7150820 7151084 -235513269 - Charlie2 DNA MER1_type -728 2134 1857 329 268 105 67 chr1 7151087 7151296 -235513057 - Charlie2 DNA MER1_type -2457 325 109 245 204 56 0 chr1 7151604 7151658 -235512695 + Charlie4a DNA MER1_type 276 332 -176 1998 107 7 39 chr1 7151667 7151977 -235512376 - AluSx SINE Alu -12 300 1 2096 92 14 3 chr1 7151977 7152269 -235512084 - AluSc SINE Alu -14 295 1 385 136 61 0 chr1 7152276 7152342 -235512011 + Charlie4a DNA MER1_type 434 503 -5 2203 96 0 3 chr1 7152490 7152792 -235511561 - AluSq SINE Alu -12 301 1 490 137 0 0 chr1 7154075 7154148 -235510205 + L1MC1 LINE L1 6254 6326 -7 1407 182 22 35 chr1 7154293 7154606 -235509747 + AluJo SINE Alu 1 309 -3 1416 169 63 3 chr1 7155651 7155953 -235508400 + MER33 DNA MER1_type 1 320 -4 2103 104 0 0 chr1 7156238 7156544 -235507809 - AluSg SINE Alu 0 306 1 497 273 100 45 chr1 7157200 7157420 -235506933 - L2 LINE L2 0 3313 3082 1022 269 110 63 chr1 7157506 7158107 -235506246 - MLT1G LTR MaLR 0 590 1 243 218 13 39 chr1 7158174 7158252 -235506101 + MIR3 SINE MIR 127 202 -6 2794 10 0 0 chr1 7158723 7159035 -235505318 + AluYb8 SINE Alu 1 312 -6 255 61 0 0 chr1 7159570 7159603 -235504750 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 585 124 39 8 chr1 7160818 7160947 -235503406 + Tigger3(Golem) DNA MER2_type 2499 2631 -398 3639 133 15 0 chr1 7160947 7161466 -235502887 - MER1A DNA MER1_type 0 527 1 255 338 93 13 chr1 7161678 7161829 -235502524 + MIR SINE MIR 24 186 -76 577 250 16 0 chr1 7163366 7163490 -235500863 + MIR SINE MIR 120 245 -17 200 59 29 0 chr1 7163765 7163799 -235500554 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 207 0 0 0 chr1 7164925 7164948 -235499405 + (T)n Simple_repeat Simple_repeat 1 23 0 360 273 258 11 chr1 7165048 7165315 -235499038 - L2 LINE L2 -962 2352 2020 215 278 0 0 chr1 7165371 7165425 -235498928 + L2 LINE L2 2560 2613 -701 859 152 0 0 chr1 7165432 7165557 -235498796 + FLAM_C SINE Alu 3 127 -6 2361 57 14 0 chr1 7166117 7166413 -235497940 - AluY SINE Alu -11 300 1 633 237 184 4 chr1 7166544 7166748 -235497605 + MIR SINE MIR 23 256 -6 191 130 0 22 chr1 7168668 7168714 -235495639 + (CGGGGG)n Simple_repeat Simple_repeat 3 47 0 22 0 0 0 chr1 7168763 7168785 -235495568 + GC_rich Low_complexity Low_complexity 1 22 0 48 18 0 0 chr1 7168819 7168874 -235495479 + GC_rich Low_complexity Low_complexity 1 55 0 204 40 0 0 chr1 7172264 7172289 -235492064 + (TC)n Simple_repeat Simple_repeat 2 26 0 631 161 98 18 chr1 7172289 7172401 -235491952 - FLAM_A SINE Alu -12 121 1 572 256 46 17 chr1 7172745 7172931 -235491422 + MIR SINE MIR 33 226 -36 181 158 53 26 chr1 7173244 7173282 -235491071 + L2 LINE L2 358 396 -2918 224 346 49 47 chr1 7174581 7174909 -235489444 - L2 LINE L2 -223 3049 2722 26 0 0 0 chr1 7175147 7175173 -235489180 + AT_rich Low_complexity Low_complexity 1 26 0 299 301 240 0 chr1 7175626 7175772 -235488581 + MER5A DNA MER1_type 9 189 0 2578 61 0 3 chr1 7175973 7176283 -235488070 - AluY SINE Alu -2 309 1 2168 89 0 40 chr1 7178019 7178322 -235486031 - AluSc SINE Alu -18 291 1 2196 125 3 0 chr1 7178509 7178813 -235485540 - AluSp SINE Alu -8 305 1 2022 144 23 3 chr1 7178943 7179248 -235485105 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr1 7179248 7179270 -235485083 + AT_rich Low_complexity Low_complexity 1 22 0 870 276 44 8 chr1 7180862 7181112 -235483241 - MLT1H1 LTR MaLR -39 516 258 470 155 136 19 chr1 7181172 7181275 -235483078 + FLAM_A SINE Alu 22 136 -6 268 320 33 26 chr1 7182034 7182187 -235482166 - L3 LINE CR1 -163 1414 1261 234 0 0 0 chr1 7182591 7182617 -235481736 + (A)n Simple_repeat Simple_repeat 1 26 0 195 343 38 9 chr1 7184861 7184966 -235479387 - MIR SINE MIR -51 211 104 871 205 20 37 chr1 7185943 7186158 -235478195 - L1MD3 LINE L1 0 8040 7844 1336 142 127 40 chr1 7186233 7186486 -235477867 + AluJb SINE Alu 17 291 -21 369 261 126 85 chr1 7186617 7186655 -235477698 - L1ME4a LINE L1 -57 6064 6029 2302 95 7 0 chr1 7186655 7186949 -235477404 + AluSc SINE Alu 1 296 -13 369 261 126 85 chr1 7186949 7187473 -235476880 - L1ME4a LINE L1 -92 6029 5479 660 128 29 20 chr1 7188043 7188145 -235476208 + AluJo/FLAM SINE Alu 14 116 -196 2239 88 40 3 chr1 7188145 7188442 -235475911 - AluY SINE Alu -3 308 1 2323 96 0 3 chr1 7188461 7188764 -235475589 + AluSc SINE Alu 1 302 -7 404 254 108 88 chr1 7188766 7188924 -235475429 + L1ME LINE L1 3059 3212 -2934 1639 120 0 0 chr1 7188924 7189140 -235475213 + AluSq SINE Alu 1 216 -97 404 254 108 88 chr1 7189140 7189393 -235474960 + L1ME LINE L1 3212 3459 -2687 2361 91 0 0 chr1 7189393 7189691 -235474662 + AluSg SINE Alu 1 298 -12 404 254 108 88 chr1 7189691 7190035 -235474318 + L1ME LINE L1 3459 3830 -2316 1060 209 225 57 chr1 7190057 7190423 -235473930 - MLT1G LTR MaLR 0 590 131 2238 81 7 18 chr1 7190423 7190731 -235473622 + AluSc SINE Alu 1 305 0 1060 209 225 57 chr1 7190731 7190817 -235473536 - MLT1G LTR MaLR -459 131 61 1836 167 14 0 chr1 7190817 7191110 -235473243 - AluJb SINE Alu -13 299 3 213 39 0 0 chr1 7191122 7191148 -235473205 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 621 155 0 0 chr1 7191150 7191253 -235473100 - AluSg/x SINE Alu -32 278 176 477 206 72 0 chr1 7191257 7191354 -235472999 - MLT1G LTR MaLR -490 105 2 306 0 0 0 chr1 7191517 7191551 -235472802 + (TA)n Simple_repeat Simple_repeat 2 35 0 1855 138 0 46 chr1 7191553 7191857 -235472496 - AluJb SINE Alu -11 301 12 267 293 24 0 chr1 7191873 7191955 -235472398 + L1ME LINE L1 4029 4112 -2034 1711 184 7 0 chr1 7192038 7192316 -235472037 + AluJo SINE Alu 1 280 -32 297 0 0 0 chr1 7192334 7192367 -235471986 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 280 157 39 chr1 7192377 7192563 -235471790 + L1ME LINE L1 4176 4339 -1827 682 227 0 0 chr1 7192563 7192691 -235471662 + FLAM_A SINE Alu 1 128 -5 483 280 157 39 chr1 7192691 7193717 -235470636 + L1ME LINE L1 4339 5541 -625 264 229 202 9 chr1 7194592 7194701 -235469652 + L2 LINE L2 3142 3271 -1 345 348 21 0 chr1 7195109 7195250 -235469103 + MIR SINE MIR 49 192 -70 591 294 72 17 chr1 7195251 7195486 -235468867 - MIR SINE MIR -9 253 6 802 148 32 19 chr1 7195771 7195926 -235468427 + L1MB5 LINE L1 6010 6166 -8 2344 100 0 3 chr1 7197095 7197395 -235466958 - AluSg SINE Alu -11 299 1 490 226 90 0 chr1 7198036 7198169 -235466184 + MIR SINE MIR 49 193 -69 252 100 0 0 chr1 7200144 7200184 -235464169 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 427 345 112 24 chr1 7200433 7200541 -235463812 - L2 LINE L2 0 3313 3216 1935 143 34 3 chr1 7200541 7200835 -235463518 - AluSx SINE Alu -9 303 1 427 345 112 24 chr1 7200835 7201192 -235463161 - L2 LINE L2 -97 3216 2807 406 269 0 21 chr1 7201229 7201405 -235462948 - MIR SINE MIR -19 243 7 285 319 70 75 chr1 7201408 7201863 -235462490 - L2 LINE L2 -540 2774 2322 24 53 0 0 chr1 7201909 7201947 -235462406 + AT_rich Low_complexity Low_complexity 1 38 0 2790 20 0 0 chr1 7203970 7204271 -235460082 + AluYb8 SINE Alu 1 301 -17 272 182 2 0 chr1 7204394 7204451 -235459902 - L1ME3 LINE L1 -196 5968 5911 1094 266 109 30 chr1 7204517 7205656 -235458697 - L1ME3 LINE L1 -356 5806 4577 490 237 51 0 chr1 7205874 7206030 -235458323 - L1M LINE L1 -737 5427 5264 24 0 0 0 chr1 7206320 7206344 -235458009 + AT_rich Low_complexity Low_complexity 1 24 0 231 36 0 0 chr1 7206537 7206565 -235457788 + (A)n Simple_repeat Simple_repeat 1 28 0 270 0 0 0 chr1 7206565 7206595 -235457758 + (TA)n Simple_repeat Simple_repeat 2 31 0 2046 72 0 27 chr1 7206595 7206858 -235457495 - AluY SINE Alu -5 306 51 216 67 0 0 chr1 7206865 7206895 -235457458 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2282 103 0 0 chr1 7208690 7209010 -235455343 - AluSg SINE Alu 0 320 1 341 230 0 0 chr1 7209815 7209889 -235454464 - MIR SINE MIR -113 149 76 671 173 168 39 chr1 7209891 7210070 -235454283 + MER105 DNA DNA 1 202 -2 215 316 43 51 chr1 7211219 7211336 -235453017 - L2 LINE L2 -16 3256 3141 2097 134 0 29 chr1 7211942 7212248 -235452105 + AluSg SINE Alu 1 297 -13 2237 141 32 3 chr1 7213819 7214195 -235450158 - MLT1B LTR MaLR 0 390 4 42 20 0 0 chr1 7215493 7215542 -235448811 + AT_rich Low_complexity Low_complexity 1 49 0 291 294 20 0 chr1 7216525 7216627 -235447726 + MIR SINE MIR 86 189 -73 25 65 0 0 chr1 7218208 7218254 -235446099 + AT_rich Low_complexity Low_complexity 1 46 0 324 0 0 0 chr1 7220045 7220081 -235444272 + (CA)n Simple_repeat Simple_repeat 2 37 0 1074 249 123 63 chr1 7222105 7222500 -235441853 - L1ME1 LINE L1 -25 6141 5668 2418 48 3 7 chr1 7222500 7222789 -235441564 + AluY SINE Alu 1 288 -23 1074 249 123 63 chr1 7222789 7222956 -235441397 - L1ME1 LINE L1 -498 5668 5513 270 81 0 0 chr1 7223039 7223076 -235441277 + (T)n Simple_repeat Simple_repeat 1 37 0 353 65 0 0 chr1 7223076 7223122 -235441231 - U5 snRNA snRNA -65 51 6 1331 209 16 35 chr1 7223354 7223670 -235440683 - AluJo SINE Alu 0 312 3 849 125 0 52 chr1 7223674 7223810 -235440543 - FLAM_C SINE Alu -3 130 2 2393 74 0 16 chr1 7224090 7224402 -235439951 - AluY SINE Alu -4 307 1 267 54 0 0 chr1 7225648 7225685 -235438668 + (T)n Simple_repeat Simple_repeat 1 37 0 333 264 0 112 chr1 7226245 7226370 -235437983 + L2 LINE L2 3191 3301 -12 1503 232 24 18 chr1 7230189 7230530 -235433823 + MER2 DNA MER2_type 1 343 -1 198 0 0 0 chr1 7232759 7232781 -235431572 + (GGAGAA)n Simple_repeat Simple_repeat 1 22 0 215 261 0 0 chr1 7234327 7234392 -235429961 + (CCA)n Simple_repeat Simple_repeat 1 65 0 505 295 116 62 chr1 7235347 7235812 -235428541 - L2 LINE L2 -2 3311 2822 203 61 30 0 chr1 7236558 7236591 -235427762 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 29 28 0 0 chr1 7237943 7237979 -235426374 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr1 7238154 7238184 -235426169 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 7241930 7241954 -235422399 + GC_rich Low_complexity Low_complexity 1 24 0 497 118 0 21 chr1 7242859 7242952 -235421401 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 286 314 124 13 chr1 7244767 7244920 -235419433 + MIR SINE MIR 33 202 -60 2442 73 0 0 chr1 7244987 7245290 -235419063 - AluY SINE Alu -8 303 1 258 287 130 13 chr1 7245745 7245925 -235418428 + MIR SINE MIR 18 216 -46 182 335 87 64 chr1 7247035 7247208 -235417145 + L2 LINE L2 2874 3050 -263 223 347 107 0 chr1 7247275 7247396 -235416957 + L2 LINE L2 3180 3313 0 534 235 0 0 chr1 7247404 7247574 -235416779 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 282 250 0 0 chr1 7247611 7247699 -235416654 + (TGGA)n Simple_repeat Simple_repeat 1 88 0 508 182 214 73 chr1 7247794 7247986 -235416367 - MER20 DNA MER1_type 0 219 1 1506 126 4 17 chr1 7249343 7249573 -235414780 - AluJo SINE Alu 0 312 86 977 281 43 7 chr1 7249637 7249999 -235414354 + L1MB7 LINE L1 5796 6176 -2 2432 45 0 0 chr1 7250058 7250346 -235414007 - AluY SINE Alu -23 288 1 1843 126 11 0 chr1 7250368 7250631 -235413722 - AluSx SINE Alu -46 266 1 348 125 0 0 chr1 7250642 7250698 -235413655 + MER96B DNA MER1_type? 190 245 -172 2381 65 0 28 chr1 7250698 7251019 -235413334 - AluSx SINE Alu 0 312 1 2142 88 3 29 chr1 7251053 7251359 -235412994 - AluY SINE Alu -11 300 3 519 137 0 17 chr1 7251781 7251809 -235412544 - MER96B DNA MER1_type? -235 182 155 2349 84 0 7 chr1 7251809 7252119 -235412234 + AluSc SINE Alu 1 308 -1 519 137 0 17 chr1 7252119 7252207 -235412146 - MER96B DNA MER1_type? -262 155 68 297 164 33 0 chr1 7252410 7252471 -235411882 + MER45 DNA AcHobo 44 106 -72 233 175 0 0 chr1 7252465 7252505 -235411848 + MER45 DNA AcHobo 1542 1581 0 * 695 253 128 0 chr1 7253425 7253715 -235410638 + MER58B DNA MER1_type 6 341 0 2392 65 0 0 chr1 7254553 7254843 -235409510 + AluY SINE Alu 1 290 -21 2858 80 0 3 chr1 7254874 7255237 -235409116 + THE1B LTR MaLR 1 362 -2 577 316 54 24 chr1 7255490 7255825 -235408528 - L1ME4a LINE L1 -255 5866 5522 2280 100 0 0 chr1 7255842 7256142 -235408211 - AluSg SINE Alu -10 300 1 1597 130 8 8 chr1 7257534 7257807 -235406546 - AluJb SINE Alu 0 319 47 1926 151 3 0 chr1 7258537 7258835 -235405518 + AluJb SINE Alu 1 299 -13 880 117 0 0 chr1 7258835 7258955 -235405398 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 7258973 7259048 -235405305 + A-rich Low_complexity Low_complexity 1 75 0 2382 77 3 0 chr1 7259461 7259760 -235404593 + AluSx SINE Alu 1 300 -12 2441 54 0 0 chr1 7260180 7260477 -235403876 + AluY SINE Alu 1 297 -14 1008 194 0 0 chr1 7260614 7260789 -235403564 - AluJ SINE Alu -13 299 125 146 72 0 0 chr1 7260789 7261114 -235403239 + AT_rich Low_complexity Low_complexity 1 47 0 842 143 0 0 chr1 7261121 7261240 -235403113 - AluJ SINE Alu -193 119 1 2327 97 0 0 chr1 7263467 7263777 -235400576 - AluSq SINE Alu -3 310 1 811 108 0 0 chr1 7264156 7264267 -235400086 - HY1 scRNA scRNA -1 111 1 2084 110 3 3 chr1 7264273 7264585 -235399768 - AluSx SINE Alu 0 312 1 705 223 22 0 chr1 7264668 7264807 -235399546 - FLAM_C SINE Alu -1 142 1 2677 246 44 28 chr1 7265109 7265330 -235399023 - MER82 DNA MER2_type 0 653 437 2219 87 0 3 chr1 7265330 7265637 -235398716 - AluSp SINE Alu 0 306 1 2677 246 44 28 chr1 7265637 7266055 -235398298 - MER82 DNA MER2_type -216 437 3 2343 80 0 0 chr1 7268822 7269123 -235395230 - AluSg SINE Alu -9 301 1 1461 85 0 0 chr1 7269895 7270153 -235394200 + (TCCA)n Simple_repeat Simple_repeat 1 258 0 546 96 0 0 chr1 7270254 7270327 -235394026 - AluJ/FLAM SINE Alu -239 73 1 802 188 0 0 chr1 7270711 7270844 -235393509 - FLAM_C SINE Alu 0 133 1 1022 137 12 6 chr1 7270894 7271055 -235393298 + U1 snRNA snRNA 4 165 0 1637 114 84 4 chr1 7271094 7271367 -235392986 + AluSg SINE Alu 1 295 -15 1823 129 3 30 chr1 7271714 7272016 -235392337 + AluSx SINE Alu 1 294 -18 2279 99 0 0 chr1 7272018 7272320 -235392033 + AluY SINE Alu 3 304 -7 242 297 44 33 chr1 7273041 7273132 -235391221 - MIR3 SINE MIR -3 205 114 2309 109 6 6 chr1 7273179 7273491 -235390862 + AluSx SINE Alu 1 312 0 940 208 50 46 chr1 7274369 7274609 -235389744 + MIR SINE MIR 19 259 -3 397 288 110 0 chr1 7274686 7274804 -235389549 - L3 LINE CR1 -133 1444 1314 1764 183 0 7 chr1 7276198 7276498 -235387855 + AluJb SINE Alu 1 298 -14 2341 103 3 3 chr1 7277548 7277858 -235386495 - AluSq SINE Alu -3 310 1 252 279 165 0 chr1 7277871 7277950 -235386403 + MIR SINE MIR 57 148 -114 2333 70 0 17 chr1 7278236 7278523 -235385830 + AluY SINE Alu 22 303 -8 269 222 0 0 chr1 7278700 7278745 -235385608 - L2 LINE L2 -24 3289 3245 208 75 25 25 chr1 7278753 7278793 -235385560 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2081 135 3 3 chr1 7278826 7279122 -235385231 - AluSx SINE Alu -16 296 1 543 202 90 106 chr1 7279122 7279310 -235385043 - MIR SINE MIR -16 246 62 292 299 19 9 chr1 7279643 7279750 -235384603 + L1MC4 LINE L1 7707 7814 -228 1510 156 89 7 chr1 7279750 7280032 -235384321 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 7280035 7280078 -235384275 + AT_rich Low_complexity Low_complexity 1 43 0 293 256 93 0 chr1 7280108 7280194 -235384159 + L1MC4 LINE L1 7806 7899 -143 1090 167 6 0 chr1 7280252 7280426 -235383927 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 7280436 7280508 -235383845 + CT-rich Low_complexity Low_complexity 1 75 -11 1796 166 10 7 chr1 7280508 7280809 -235383544 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 7280809 7280822 -235383531 + CT-rich Low_complexity Low_complexity 74 86 0 302 229 0 16 chr1 7280828 7280889 -235383464 + L2 LINE L2 3254 3313 0 190 321 0 25 chr1 7280954 7281035 -235383318 + L2 LINE L2 2174 2252 -1062 2302 113 0 3 chr1 7281409 7281720 -235382633 - AluSg SINE Alu 0 310 1 231 36 0 0 chr1 7281720 7281748 -235382605 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2022 108 48 0 chr1 7281748 7282017 -235382336 - AluSx SINE Alu -30 282 1 991 101 8 0 chr1 7282020 7282149 -235382204 - AluSq/x SINE Alu -179 134 5 321 260 67 39 chr1 7283199 7283303 -235381050 - L3b LINE CR1 -190 1393 1287 2157 115 3 14 chr1 7283696 7284027 -235380326 - AluSx SINE Alu 0 312 3 21 0 0 0 chr1 7284034 7284055 -235380298 + AT_rich Low_complexity Low_complexity 1 21 0 2034 103 29 7 chr1 7284264 7284545 -235379808 - AluSx SINE Alu -14 298 12 2326 66 20 7 chr1 7284940 7285241 -235379112 - AluSq SINE Alu -8 305 1 2072 116 176 19 chr1 7285311 7285350 -235379003 - MSTA LTR MaLR 0 428 396 2197 126 10 0 chr1 7285350 7285659 -235378694 + AluSx SINE Alu 1 312 0 2072 116 176 19 chr1 7285659 7285989 -235378364 - MSTA LTR MaLR -32 396 1 225 0 0 0 chr1 7286281 7286306 -235378047 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 710 187 0 0 chr1 7286309 7286416 -235377937 - AluJb SINE Alu -31 281 175 1840 131 28 21 chr1 7286455 7286775 -235377578 + AluJb SINE Alu 1 312 0 2140 98 7 17 chr1 7286785 7287095 -235377258 - AluSx SINE Alu 0 308 2 203 316 63 0 chr1 7287843 7287922 -235376431 + L2 LINE L2 3189 3272 0 1799 81 27 0 chr1 7287979 7288201 -235376152 - AluSx SINE Alu -84 228 1 872 124 0 0 chr1 7288330 7288443 -235375910 + AluSx SINE Alu 62 174 -138 1817 97 4 4 chr1 7288444 7288681 -235375672 - AluSc SINE Alu -72 237 1 788 193 60 0 chr1 7288690 7288856 -235375497 - MLT1C LTR MaLR -291 176 1 210 336 138 52 chr1 7288857 7289089 -235375264 + L2 LINE L2 3002 3253 -19 234 0 0 0 chr1 7289093 7289119 -235375234 + (CA)n Simple_repeat Simple_repeat 2 27 0 805 188 0 0 chr1 7289119 7289247 -235375106 - FLAM_C SINE Alu -5 128 1 2125 129 7 10 chr1 7289292 7289601 -235374752 + AluSx SINE Alu 3 310 -2 2179 112 7 0 chr1 7289805 7290091 -235374262 + AluSx SINE Alu 1 288 -24 297 0 0 0 chr1 7290103 7290136 -235374217 + (TG)n Simple_repeat Simple_repeat 2 34 0 418 370 24 6 chr1 7290269 7290434 -235373919 - MIR3 SINE MIR -9 199 32 270 246 0 0 chr1 7290543 7290608 -235373745 + MIR SINE MIR 34 98 -164 2323 104 0 0 chr1 7290696 7290995 -235373358 + AluSx SINE Alu 1 299 -13 297 75 0 0 chr1 7291122 7291162 -235373191 + (TG)n Simple_repeat Simple_repeat 2 41 0 1002 126 119 0 chr1 7291442 7291593 -235372760 + AluJb SINE Alu 137 305 -7 248 109 0 22 chr1 7291596 7291642 -235372711 + (GAA)n Simple_repeat Simple_repeat 1 45 0 2075 130 27 10 chr1 7291699 7292000 -235372353 - AluSq SINE Alu -7 306 1 2480 71 3 7 chr1 7292107 7292416 -235371937 - AluY SINE Alu 0 311 4 2351 83 3 7 chr1 7292452 7292754 -235371599 + AluY SINE Alu 1 301 -10 1618 184 3 44 chr1 7292770 7293065 -235371288 + AluJo SINE Alu 10 293 -19 444 37 0 0 chr1 7293065 7293119 -235371234 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 1618 184 3 44 chr1 7293119 7293139 -235371214 + AluJo SINE Alu 293 312 0 349 245 47 19 chr1 7293186 7293292 -235371061 - L2 LINE L2 0 3313 3205 609 67 0 0 chr1 7293472 7293547 -235370806 + AluS SINE Alu 2 76 -237 2418 74 0 3 chr1 7293547 7293831 -235370522 + AluSq SINE Alu 15 297 -16 266 75 0 0 chr1 7293886 7293926 -235370427 + HY1 scRNA scRNA 72 111 -1 699 196 0 8 chr1 7294234 7294367 -235369986 + FLAM_C SINE Alu 2 133 -10 223 169 0 34 chr1 7294367 7294426 -235369927 + GA-rich Low_complexity Low_complexity 4 60 0 1994 127 7 13 chr1 7295612 7295919 -235368434 - AluJb SINE Alu -7 305 1 2552 58 0 0 chr1 7296076 7296371 -235367982 + AluY SINE Alu 1 295 -16 188 289 26 26 chr1 7296415 7296491 -235367862 + L2 LINE L2 2422 2497 -817 610 315 88 28 chr1 7296491 7297060 -235367293 + L2 LINE L2 2221 2823 -491 538 280 70 23 chr1 7297094 7297308 -235367045 + L2 LINE L2 3090 3313 0 2160 103 34 0 chr1 7297379 7297670 -235366683 + AluSg SINE Alu 1 301 -9 335 327 94 65 chr1 7297805 7298239 -235366114 + L2 LINE L2 2812 3258 -14 829 217 0 6 chr1 7298468 7298629 -235365724 + FRAM SINE Alu 1 160 -6 2146 91 30 27 chr1 7298682 7299095 -235365258 + AluSp SINE Alu 1 414 0 284 250 115 77 chr1 7299095 7299168 -235365185 + L1 LINE L1 4600 4669 -1477 2489 49 0 0 chr1 7299168 7299456 -235364897 + AluY SINE Alu 1 288 -23 180 0 0 0 chr1 7299456 7299476 -235364877 + (TA)n Simple_repeat Simple_repeat 2 21 0 284 250 115 77 chr1 7299476 7299557 -235364796 + L1 LINE L1 4668 4761 -1385 2427 89 0 16 chr1 7299557 7299873 -235364480 + AluSq SINE Alu 1 311 -2 411 217 3 44 chr1 7299922 7300072 -235364281 + L1ME4a LINE L1 5201 5339 -807 1829 113 19 12 chr1 7300073 7300329 -235364024 + AluSp SINE Alu 39 296 -17 2361 139 86 8 chr1 7300334 7300729 -235363624 + MSTB LTR MaLR 1 426 0 435 219 34 25 chr1 7300743 7300862 -235363491 - MIR SINE MIR -28 234 115 772 237 21 5 chr1 7300867 7301061 -235363292 + MER58A DNA MER1_type 1 197 -27 453 184 13 133 chr1 7301064 7301135 -235363218 - MER45A DNA AcHobo -1407 174 131 2028 116 56 0 chr1 7301135 7301419 -235362934 + AluSx SINE Alu 1 300 -12 453 184 13 133 chr1 7301419 7301505 -235362848 - MER45A DNA AcHobo -1450 131 36 221 330 42 4 chr1 7301578 7301676 -235362677 - MIR SINE MIR -94 114 13 282 349 8 0 chr1 7301694 7301820 -235362533 + L1ME4a LINE L1 5486 5612 -509 353 258 118 45 chr1 7301829 7302050 -235362303 + L1ME4a LINE L1 5827 6063 -58 1749 159 25 11 chr1 7302266 7302549 -235361804 + AluJb SINE Alu 10 296 -16 368 264 203 11 chr1 7302627 7302809 -235361544 + MER115 DNA AcHobo 23 239 -454 3227 125 97 22 chr1 7302991 7303568 -235360785 - LTR29 LTR ERV1 0 622 3 243 213 85 43 chr1 7303585 7303679 -235360674 + Zaphod DNA AcHobo 3915 4012 -19 2244 109 3 34 chr1 7303813 7304134 -235360219 - AluSx SINE Alu -1 311 1 1602 157 4 15 chr1 7304134 7304395 -235359958 - AluJo SINE Alu -16 296 39 2286 110 3 19 chr1 7304569 7304886 -235359467 + AluSx SINE Alu 1 312 0 1739 175 23 16 chr1 7304973 7305276 -235359077 - AluJb SINE Alu -7 305 1 2178 119 3 3 chr1 7305685 7305987 -235358366 - AluSx SINE Alu -10 302 1 2116 108 0 63 chr1 7306193 7306526 -235357827 + AluSx SINE Alu 1 312 0 2132 177 16 26 chr1 7306730 7307081 -235357272 - L1MB7 LINE L1 -9 6175 5827 2287 114 3 0 chr1 7307081 7307389 -235356964 - AluSx SINE Alu -3 309 1 2132 177 16 26 chr1 7307389 7307467 -235356886 - L1MB7 LINE L1 -357 5827 5750 2256 103 17 7 chr1 7307527 7307829 -235356524 - AluSg SINE Alu -5 305 1 2130 99 23 26 chr1 7307830 7308132 -235356221 - AluSx SINE Alu -11 301 1 2250 121 7 0 chr1 7308284 7308589 -235355764 - AluSp SINE Alu -6 307 1 548 288 142 14 chr1 7308647 7308812 -235355541 - L1ME3 LINE L1 -218 5944 5801 1070 214 28 0 chr1 7308812 7309027 -235355326 - MER58A DNA MER1_type 0 224 4 548 288 142 14 chr1 7309027 7309406 -235354947 - L1ME3 LINE L1 -361 5801 5323 2024 121 0 17 chr1 7309406 7309695 -235354658 - AluSx SINE Alu -4 308 25 1646 54 0 0 chr1 7309695 7309879 -235354474 - AluY SINE Alu -126 185 1 420 149 0 64 chr1 7309905 7309999 -235354354 + AluJ/FRAM SINE Alu 218 305 -7 24 0 0 0 chr1 7309999 7310023 -235354330 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chr1 7310036 7310074 -235354279 + AT_rich Low_complexity Low_complexity 1 38 0 216 0 0 0 chr1 7310335 7310359 -235353994 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 311 256 33 0 chr1 7310387 7310477 -235353876 - L1ME LINE L1 -297 5824 5732 2229 112 0 7 chr1 7310522 7310827 -235353526 - AluSg SINE Alu -7 303 1 1071 68 8 0 chr1 7310834 7310966 -235353387 - AluSq/x SINE Alu -179 133 1 2604 65 3 0 chr1 7311662 7311971 -235352382 + AluY SINE Alu 1 310 -1 2651 64 0 0 chr1 7311974 7312285 -235352068 + AluY SINE Alu 1 311 0 2097 139 0 10 chr1 7312297 7312606 -235351747 + AluSx SINE Alu 1 306 -6 323 197 15 0 chr1 7312662 7312728 -235351625 - AluJ/FLAM SINE Alu -228 74 8 2071 106 7 0 chr1 7312777 7313060 -235351293 + AluY SINE Alu 18 302 -9 383 158 267 10 chr1 7313288 7313389 -235350964 + FLAM_C SINE Alu 5 131 -2 572 163 0 0 chr1 7313615 7313701 -235350652 + AluS SINE Alu 7 92 -221 1683 124 116 0 chr1 7313721 7313979 -235350374 + AluSx SINE Alu 21 308 -4 969 129 0 0 chr1 7315143 7315282 -235349071 + AluJb SINE Alu 1 139 -173 2135 112 0 7 chr1 7315496 7315782 -235348571 - AluSq SINE Alu -29 284 1 1802 155 3 14 chr1 7316033 7316330 -235348023 + AluJo SINE Alu 5 298 -14 1401 201 123 4 chr1 7316333 7316602 -235347751 + AluJo SINE Alu 1 301 -1 331 111 0 0 chr1 7316602 7316647 -235347706 + (GA)n Simple_repeat Simple_repeat 1 45 0 584 171 0 8 chr1 7316650 7316767 -235347586 + GA-rich Low_complexity Low_complexity 1 116 0 387 367 137 5 chr1 7316781 7317198 -235347155 + L2 LINE L2 2173 2644 -670 2284 100 0 0 chr1 7317206 7317522 -235346831 - AluSx SINE Alu 0 317 2 445 284 42 64 chr1 7317614 7317850 -235346503 + L2 LINE L2 3078 3308 -5 1886 124 11 11 chr1 7318356 7318630 -235345723 + AluSq SINE Alu 2 275 -38 778 125 191 0 chr1 7318631 7318767 -235345586 + AluSp SINE Alu 137 298 -15 2509 76 3 0 chr1 7318908 7319211 -235345142 + AluSp SINE Alu 2 305 -8 405 58 0 0 chr1 7319211 7319263 -235345090 + (TA)n Simple_repeat Simple_repeat 2 53 0 316 143 29 0 chr1 7319304 7319374 -235344979 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 293 86 0 0 chr1 7319376 7319434 -235344919 + LTR66 LTR ERVL 394 451 -159 2295 84 3 0 chr1 7319653 7319972 -235344381 + AluSp SINE Alu 1 320 0 868 121 35 7 chr1 7319993 7320134 -235344219 + L1MA5 LINE L1 6154 6298 -2 326 298 23 46 chr1 7320185 7320316 -235344037 + MIR SINE MIR 134 261 -1 254 146 0 18 chr1 7320656 7320711 -235343642 + (TCC)n Simple_repeat Simple_repeat 3 56 0 253 299 11 11 chr1 7321081 7321168 -235343185 - LTR67 LTR ERVL -3 554 468 343 228 40 101 chr1 7321242 7321354 -235342999 + L1MD2 LINE L1 6210 6312 -47 2267 111 3 0 chr1 7321354 7321660 -235342693 - AluSx SINE Alu -5 307 1 343 228 40 101 chr1 7321660 7321696 -235342657 + L1MD2 LINE L1 6312 6349 -10 2145 106 6 38 chr1 7322026 7322346 -235342007 + AluSg SINE Alu 1 310 0 2389 88 10 0 chr1 7322956 7323250 -235341103 - AluSp SINE Alu -16 297 1 2376 91 27 0 chr1 7323554 7323851 -235340502 - AluSq SINE Alu -3 310 6 816 85 24 30 chr1 7323857 7324021 -235340332 + (TTTC)n Simple_repeat Simple_repeat 1 163 0 468 0 0 0 chr1 7324019 7324071 -235340282 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 * 1979 113 0 18 chr1 7324071 7324423 -235339930 - AluSx SINE Alu 0 359 13 230 283 0 0 chr1 7324436 7324489 -235339864 + L2 LINE L2 2688 2740 -574 526 319 86 46 chr1 7324497 7324951 -235339402 + L2 LINE L2 2842 3313 0 2493 108 8 3 chr1 7325011 7325373 -235338980 - THE1B LTR MaLR 0 364 1 428 175 39 38 chr1 7326321 7326436 -235337917 + MER34 LTR ERV1 431 536 -6 235 40 0 140 chr1 7326444 7326494 -235337859 + MLT1D LTR MaLR 245 287 -218 2297 94 0 10 chr1 7326521 7326809 -235337544 - AluSq SINE Alu -28 285 1 857 77 0 31 chr1 7326906 7327036 -235337317 + MER30 DNA MER1_type 1 126 -104 2272 76 4 0 chr1 7327039 7327346 -235337007 - AluSx SINE Alu 0 312 5 410 198 47 38 chr1 7327369 7327475 -235336878 + L2 LINE L2 3166 3272 0 1994 123 45 3 chr1 7328106 7328398 -235335955 - AluSg SINE Alu -6 304 1 985 246 38 102 chr1 7328583 7328685 -235335668 - MER34 LTR ERV1 0 542 435 2205 135 0 3 chr1 7328685 7328989 -235335364 - AluSx SINE Alu -9 303 1 985 246 38 102 chr1 7328989 7329438 -235334915 - MER34 LTR ERV1 -107 435 27 2250 98 3 35 chr1 7329438 7329755 -235334598 - AluSx SINE Alu -5 307 1 985 246 38 102 chr1 7329755 7329779 -235334574 - MER34 LTR ERV1 -515 27 3 1762 100 10 46 chr1 7329806 7330213 -235334140 - MER1B DNA MER1_type 0 339 1 2293 108 3 25 chr1 7330555 7330870 -235333483 + AluSp SINE Alu 1 308 -5 2170 117 3 0 chr1 7330889 7331179 -235333174 + AluSx SINE Alu 5 295 -17 1575 155 68 0 chr1 7331551 7331850 -235332503 + AluJo SINE Alu 1 317 0 2307 128 0 0 chr1 7332171 7332476 -235331877 - AluJo SINE Alu -7 305 1 1957 127 37 10 chr1 7332820 7333155 -235331198 - AluSx SINE Alu 0 343 1 26 0 0 0 chr1 7333476 7333502 -235330851 + AT_rich Low_complexity Low_complexity 1 26 0 307 299 26 0 chr1 7333510 7333587 -235330766 - L1MC4 LINE L1 -1350 6692 6614 857 137 0 0 chr1 7333615 7333732 -235330621 - FLAM_C SINE Alu -26 117 1 210 91 0 0 chr1 7333760 7333793 -235330560 + (TG)n Simple_repeat Simple_repeat 2 34 0 1010 179 6 0 chr1 7333838 7334000 -235330353 + AluJb SINE Alu 136 298 -14 428 231 27 34 chr1 7334705 7334852 -235329501 + AluYa5 SINE Alu 164 309 -2 555 174 93 41 chr1 7334853 7335025 -235329328 - MER96B DNA MER1_type? -236 181 1 869 189 13 0 chr1 7335054 7335207 -235329146 - AluJb SINE Alu -21 291 137 24 96 0 0 chr1 7335635 7335708 -235328645 + GC_rich Low_complexity Low_complexity 1 73 0 826 124 0 0 chr1 7336221 7336334 -235328019 + AluJb SINE Alu 196 308 -4 2137 105 54 0 chr1 7336342 7336636 -235327717 + AluSg SINE Alu 1 310 0 737 254 21 25 chr1 7336772 7337008 -235327345 - L1MC4 LINE L1 0 8042 7808 204 68 0 102 chr1 7337101 7337160 -235327193 + (TCTCTG)n Simple_repeat Simple_repeat 3 55 0 34 0 0 0 chr1 7337819 7337853 -235326500 + AT_rich Low_complexity Low_complexity 1 34 0 449 95 60 0 chr1 7337853 7337937 -235326416 - L1PB1 LINE L1 0 6151 6063 256 260 8 98 chr1 7338081 7338215 -235326138 - MER5A DNA MER1_type 0 189 54 307 222 40 95 chr1 7338408 7338534 -235325819 - L1ME LINE L1 -466 5655 5537 2316 92 0 0 chr1 7338627 7338939 -235325414 + AluSx SINE Alu 1 312 0 509 325 124 0 chr1 7339022 7339216 -235325137 + MIR SINE MIR 26 243 -19 405 300 19 25 chr1 7339572 7339732 -235324621 + MIR SINE MIR 34 192 -70 207 344 78 19 chr1 7339831 7339985 -235324368 + L2 LINE L2 2578 2740 -574 1101 73 0 7 chr1 7341367 7341504 -235322849 - AluSp/q SINE Alu -15 298 163 331 316 18 18 chr1 7341840 7341954 -235322399 + MIR SINE MIR 109 222 -40 2096 113 10 3 chr1 7341966 7342257 -235322096 - AluSg SINE Alu -17 293 1 1844 171 3 22 chr1 7342663 7342978 -235321375 + AluJb SINE Alu 1 309 -3 211 205 0 0 chr1 7343128 7343167 -235321186 + CT-rich Low_complexity Low_complexity 3 41 0 729 176 0 29 chr1 7343167 7343303 -235321050 - AluJb SINE Alu -179 133 2 532 238 6 70 chr1 7343385 7343486 -235320867 + MER45 DNA AcHobo 4 91 -862 2241 96 7 0 chr1 7343486 7343777 -235320576 - AluSx SINE Alu -19 293 1 532 238 6 70 chr1 7343777 7343847 -235320506 + MER45 DNA AcHobo 91 164 -789 450 248 255 0 chr1 7343968 7344121 -235320232 + MER45C DNA AcHobo 762 953 0 202 354 31 42 chr1 7344337 7344433 -235319920 + MIR3 SINE MIR 106 200 -8 1918 160 10 0 chr1 7344556 7344850 -235319503 + AluJo SINE Alu 1 297 -15 2518 93 0 0 chr1 7345130 7345443 -235318910 + AluSq SINE Alu 1 313 0 2142 130 0 3 chr1 7345579 7345871 -235318482 - AluSx SINE Alu -21 291 1 742 188 0 0 chr1 7346255 7346388 -235317965 - FLAM_C SINE Alu 0 133 1 935 137 12 6 chr1 7346438 7346599 -235317754 + U1 snRNA snRNA 4 165 0 1728 114 84 4 chr1 7346638 7346911 -235317442 + AluSg SINE Alu 1 295 -15 1913 129 3 30 chr1 7347258 7347560 -235316793 + AluSx SINE Alu 1 294 -18 2388 99 0 0 chr1 7347562 7347864 -235316489 + AluY SINE Alu 3 304 -7 225 319 44 33 chr1 7348585 7348676 -235315677 - MIR3 SINE MIR -3 205 114 2320 109 6 6 chr1 7348723 7349035 -235315318 + AluSx SINE Alu 1 312 0 884 208 50 46 chr1 7349913 7350153 -235314200 + MIR SINE MIR 19 259 -3 378 288 110 0 chr1 7350230 7350348 -235314005 - L3 LINE CR1 -133 1444 1314 1775 183 0 7 chr1 7351742 7352042 -235312311 + AluJb SINE Alu 1 298 -14 2353 103 3 3 chr1 7353092 7353402 -235310951 - AluSq SINE Alu -3 310 1 233 279 165 0 chr1 7353415 7353494 -235310859 + MIR SINE MIR 57 148 -114 2340 70 0 17 chr1 7353781 7354068 -235310285 + AluY SINE Alu 22 303 -8 255 245 0 0 chr1 7354241 7354290 -235310063 - L2 LINE L2 -20 3293 3245 208 75 25 25 chr1 7354298 7354338 -235310015 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2089 135 3 3 chr1 7354371 7354667 -235309686 - AluSx SINE Alu -16 296 1 511 223 85 101 chr1 7354667 7354855 -235309498 - MIR SINE MIR -16 246 62 300 306 25 13 chr1 7355150 7355295 -235309058 + L1MC4 LINE L1 7573 7814 -95 1517 156 89 7 chr1 7355295 7355577 -235308776 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 7355580 7355623 -235308730 + AT_rich Low_complexity Low_complexity 1 43 0 302 256 93 0 chr1 7355653 7355739 -235308614 + L1MC4 LINE L1 7806 7899 -143 1096 167 6 0 chr1 7355797 7355971 -235308382 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 7355981 7356053 -235308300 + CT-rich Low_complexity Low_complexity 1 75 -11 1806 166 10 7 chr1 7356053 7356354 -235307999 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 7356354 7356367 -235307986 + CT-rich Low_complexity Low_complexity 74 86 0 286 229 0 16 chr1 7356373 7356434 -235307919 + L2 LINE L2 3254 3313 0 181 321 0 25 chr1 7356499 7356580 -235307773 + L2 LINE L2 2174 2252 -1062 2304 113 0 3 chr1 7356936 7357265 -235307088 - AluSg SINE Alu 0 328 1 1966 129 50 4 chr1 7357283 7357563 -235306790 - AluSq SINE Alu -20 293 1 695 183 0 0 chr1 7358261 7358376 -235305977 + AluJo SINE Alu 1 115 -187 2759 72 3 8 chr1 7358376 7358748 -235305605 - THE1C LTR MaLR -4 371 1 1057 174 10 20 chr1 7358748 7358944 -235305409 + AluJo SINE Alu 106 299 -13 856 202 39 6 chr1 7359048 7359226 -235305127 - MIR SINE MIR -60 202 19 1242 185 14 14 chr1 7359556 7359778 -235304575 + AluJb SINE Alu 81 302 -10 1678 172 0 47 chr1 7360216 7360535 -235303818 + AluJb SINE Alu 1 304 -8 1550 121 3 121 chr1 7360694 7360874 -235303479 - AluSc SINE Alu -17 292 167 243 0 0 0 chr1 7360874 7360901 -235303452 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1550 121 3 121 chr1 7360901 7361051 -235303302 - AluSc SINE Alu -142 167 1 281 122 20 0 chr1 7361053 7361102 -235303251 - AluSq/x SINE Alu -170 132 83 318 333 140 0 chr1 7361277 7361427 -235302926 - MIR SINE MIR -18 244 74 2109 138 0 28 chr1 7361514 7361833 -235302520 + AluSx SINE Alu 3 312 0 511 238 72 86 chr1 7361841 7362250 -235302103 + L1M4 LINE L1 3896 4309 -1837 1930 157 10 16 chr1 7362250 7362563 -235301790 - AluJb SINE Alu -1 311 1 511 238 72 86 chr1 7362563 7362597 -235301756 + L1M4 LINE L1 4309 4342 -1804 2138 136 0 3 chr1 7362597 7362907 -235301446 + AluSx SINE Alu 1 309 -3 511 238 72 86 chr1 7362907 7363094 -235301259 + L1M4 LINE L1 4342 4610 -1536 496 95 0 0 chr1 7363132 7363206 -235301147 + AluSp/q SINE Alu 231 304 -9 284 188 24 35 chr1 7363208 7363293 -235301060 + L1M4 LINE L1 4638 4721 -1425 346 295 33 0 chr1 7363302 7363424 -235300929 - L1MC/D LINE L1 -2053 5755 5630 330 283 65 7 chr1 7363415 7363553 -235300800 - L1MC/D LINE L1 -2401 5407 5262 * 480 127 0 0 chr1 7363556 7363635 -235300718 - MER116 DNA Mariner -1 79 1 2111 135 3 13 chr1 7363667 7363978 -235300375 - AluSx SINE Alu -4 308 1 837 316 107 57 chr1 7363978 7364169 -235300184 - L1MC/D LINE L1 -981 5165 4985 2348 101 0 0 chr1 7364169 7364465 -235299888 + AluSc SINE Alu 3 298 -11 837 316 107 57 chr1 7364465 7364654 -235299699 - L1MC/D LINE L1 -1161 4985 4807 1901 164 3 7 chr1 7364654 7364958 -235299395 - AluJb SINE Alu -9 303 1 837 316 107 57 chr1 7364958 7365156 -235299197 - L1MC/D LINE L1 -1339 4807 4557 288 258 58 41 chr1 7365160 7365455 -235298898 - L1MC/D LINE L1 -2695 3451 3152 609 271 77 45 chr1 7365462 7365579 -235298774 - L1MC/D LINE L1 -3083 3063 2951 2416 113 0 0 chr1 7365579 7365888 -235298465 - AluSg SINE Alu -1 309 1 609 271 77 45 chr1 7365888 7366017 -235298336 - L1MC/D LINE L1 -3195 2951 2809 307 248 68 38 chr1 7366017 7366160 -235298193 - MIR SINE MIR -65 143 3 21 0 0 0 chr1 7366260 7366281 -235298072 + AT_rich Low_complexity Low_complexity 1 21 0 2431 94 0 0 chr1 7366742 7367040 -235297313 + AluSx SINE Alu 1 298 -14 214 266 55 37 chr1 7368805 7368914 -235295439 + L2 LINE L2 1301 1411 -1903 332 292 148 52 chr1 7369155 7369580 -235294773 + MLT1J LTR MaLR 1 466 -45 2894 137 20 29 chr1 7369626 7369711 -235294642 + L1MA8 LINE L1 5539 5623 -677 2192 91 51 46 chr1 7369711 7370084 -235294269 - THE1C LTR MaLR 0 375 1 2894 137 20 29 chr1 7370084 7370497 -235293856 + L1MA8 LINE L1 5623 6002 -298 622 206 8 8 chr1 7370497 7370628 -235293725 + FLAM_A SINE Alu 2 132 -1 2894 137 20 29 chr1 7370628 7370735 -235293618 + L1MA8 LINE L1 6002 6108 -192 1097 176 16 27 chr1 7370761 7370815 -235293538 - AluSx SINE Alu -126 186 133 2221 98 3 33 chr1 7370815 7371122 -235293231 - AluSg1 SINE Alu -11 298 1 1097 176 16 27 chr1 7371122 7371255 -235293098 - AluSx SINE Alu -179 133 1 1754 126 0 41 chr1 7371288 7371609 -235292744 + AluSx SINE Alu 1 309 0 428 100 0 0 chr1 7371609 7371669 -235292684 + Alu SINE Alu 231 290 -21 1362 134 0 5 chr1 7371686 7371896 -235292457 - AluSg/x SINE Alu 0 308 100 279 211 26 0 chr1 7371998 7372074 -235292279 + (CAAT)n Simple_repeat Simple_repeat 1 78 0 305 263 7 0 chr1 7372082 7372219 -235292134 + (TCCA)n Simple_repeat Simple_repeat 4 141 0 1011 152 0 0 chr1 7372244 7372422 -235291931 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 374 260 0 17 chr1 7372441 7372618 -235291735 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 210 318 0 0 chr1 7372619 7372682 -235291671 + (CCCA)n Simple_repeat Simple_repeat 4 66 0 378 0 0 0 chr1 7373571 7373613 -235290740 + (TG)n Simple_repeat Simple_repeat 2 43 0 273 118 0 0 chr1 7373613 7373664 -235290689 + (GA)n Simple_repeat Simple_repeat 2 52 0 1845 132 18 14 chr1 7373665 7373945 -235290408 - AluJb SINE Alu -31 281 1 2280 80 0 7 chr1 7374288 7374596 -235289757 + AluSx SINE Alu 1 306 0 2432 87 3 0 chr1 7375007 7375307 -235289046 - AluSx SINE Alu -11 301 1 22 35 0 0 chr1 7376041 7376070 -235288283 + GC_rich Low_complexity Low_complexity 1 29 0 253 51 0 0 chr1 7376427 7376466 -235287887 + ORSL DNA AcHobo 171 209 -66 283 264 173 9 chr1 7376581 7376691 -235287662 - L2 LINE L2 -34 3279 3152 745 85 94 0 chr1 7376722 7376828 -235287525 - FLAM_C SINE Alu -16 117 2 373 300 50 70 chr1 7376834 7377022 -235287331 - L2 LINE L2 -114 3199 3020 2146 110 14 3 chr1 7377022 7377314 -235287039 + AluSx SINE Alu 1 295 -17 373 300 50 70 chr1 7377314 7377468 -235286885 - L2 LINE L2 -293 3020 2864 241 256 141 16 chr1 7378459 7378580 -235285773 - MLT1J2 LTR MaLR -46 404 269 1719 167 30 17 chr1 7380502 7380801 -235283552 + AluJb SINE Alu 1 303 -9 219 304 0 0 chr1 7380913 7381038 -235283315 + (CA)n Simple_repeat Simple_repeat 1 125 0 464 172 21 0 chr1 7381697 7381790 -235282563 - MER53 DNA DNA -2 187 93 250 230 96 96 chr1 7382204 7382413 -235281940 - L1ME3A LINE L1 0 6170 5962 355 233 273 7 chr1 7382447 7382597 -235281756 - LTR16C LTR ERVL 0 491 302 1674 164 7 20 chr1 7382600 7382905 -235281448 - MLT1A1 LTR MaLR -64 301 1 239 267 133 0 chr1 7382913 7383003 -235281350 - LTR16C LTR ERVL -230 261 160 949 170 29 164 chr1 7383024 7383244 -235281109 - MLT1B LTR MaLR 0 390 201 280 143 0 0 chr1 7383265 7383314 -235281039 - Alu SINE Alu 0 300 252 1655 239 73 41 chr1 7383470 7383895 -235280458 - L1ME3A LINE L1 -239 5931 5476 2081 123 19 23 chr1 7383895 7384205 -235280148 - AluSq SINE Alu -4 309 1 1655 239 73 41 chr1 7384205 7384436 -235279917 - L1ME3A LINE L1 -694 5476 5254 180 0 0 0 chr1 7384450 7384470 -235279883 + (T)n Simple_repeat Simple_repeat 1 20 0 330 259 95 7 chr1 7384507 7384654 -235279699 + L1M4 LINE L1 5006 5165 -981 1986 153 0 7 chr1 7384661 7384955 -235279398 + AluJb SINE Alu 1 292 -20 273 263 61 18 chr1 7384974 7385088 -235279265 - L1ME3A LINE L1 -1568 4578 4460 1438 85 0 20 chr1 7385102 7385301 -235279052 + AluSg/x SINE Alu 115 309 -1 703 268 89 59 chr1 7385303 7385662 -235278691 - L1ME3A LINE L1 -2338 3808 3439 405 58 0 0 chr1 7385662 7385714 -235278639 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 1072 163 218 28 chr1 7385714 7385966 -235278387 - AluSg SINE Alu 0 300 1 1603 105 168 88 chr1 7386102 7386316 -235278037 + MLT1B LTR MaLR 5 201 -189 1998 151 131 13 chr1 7386316 7386699 -235277654 + MSTA LTR MaLR 1 428 0 1603 105 168 88 chr1 7386699 7386757 -235277596 + MLT1B LTR MaLR 201 253 -137 688 151 109 0 chr1 7386757 7386876 -235277477 + FLAM_C SINE Alu 1 132 -1 1603 105 168 88 chr1 7386876 7386954 -235277399 + MLT1B LTR MaLR 253 384 -6 568 206 39 116 chr1 7386994 7387063 -235277290 - L1M4 LINE L1 -2877 3269 3196 2334 125 0 0 chr1 7387063 7387374 -235276979 + AluSx SINE Alu 1 311 -1 568 206 39 116 chr1 7387374 7387558 -235276795 - L1M4 LINE L1 -2950 3196 2999 2144 144 0 3 chr1 7387558 7387871 -235276482 - AluJb SINE Alu 0 312 1 568 206 39 116 chr1 7387871 7387894 -235276459 - L1M4 LINE L1 -3147 2999 2976 2234 126 7 0 chr1 7387894 7388204 -235276149 - AluSx SINE Alu 0 312 1 568 206 39 116 chr1 7388204 7388312 -235276041 - L1M4 LINE L1 -3170 2976 2923 276 206 21 184 chr1 7388542 7388612 -235275741 + L2 LINE L2 2245 2325 -989 2243 114 3 0 chr1 7388612 7388930 -235275423 - AluSp SINE Alu 0 313 1 276 206 21 184 chr1 7388930 7388944 -235275409 + L2 LINE L2 2325 2340 -974 2110 130 3 3 chr1 7388944 7389243 -235275110 - AluSx SINE Alu -13 299 1 276 206 21 184 chr1 7389243 7389298 -235275055 + L2 LINE L2 2340 2362 -952 890 160 77 50 chr1 7389298 7389479 -235274874 + AluJo SINE Alu 1 186 -126 1896 148 7 10 chr1 7389585 7389890 -235274463 + AluSx SINE Alu 1 304 -8 1078 139 0 0 chr1 7389890 7390064 -235274289 + AluSg/x SINE Alu 134 307 0 342 0 0 0 chr1 7390408 7390446 -235273907 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 2124 98 0 4 chr1 7390450 7390726 -235273627 - AluSx SINE Alu -37 275 1 400 186 10 49 chr1 7390726 7390828 -235273525 - MER39 LTR ERV1 -609 98 1 357 338 1 23 chr1 7393776 7393909 -235270444 - MIR3 SINE MIR -51 157 42 2262 124 0 0 chr1 7394292 7394591 -235269762 + AluSq SINE Alu 1 299 -14 2395 95 0 0 chr1 7394932 7395227 -235269126 + AluSx SINE Alu 1 295 -17 297 0 0 0 chr1 7395227 7395260 -235269093 + (TA)n Simple_repeat Simple_repeat 1 33 0 2372 97 0 0 chr1 7395529 7395828 -235268525 - AluSq SINE Alu -9 304 6 36 23 0 0 chr1 7396001 7396044 -235268309 + AT_rich Low_complexity Low_complexity 1 43 0 2000 145 3 13 chr1 7396346 7396650 -235267703 + AluJb SINE Alu 1 301 -11 466 224 56 8 chr1 7396756 7396881 -235267472 + MLT1J2 LTR MaLR 23 153 -297 244 254 16 0 chr1 7396960 7397023 -235267330 + MLT1J2 LTR MaLR 266 329 -121 255 286 41 61 chr1 7397147 7397245 -235267108 - L3 LINE CR1 -943 634 539 4138 133 31 2 chr1 7397394 7398011 -235266342 + MER41B LTR ERV1 1 635 0 1253 113 0 0 chr1 7398490 7398658 -235265695 + AluSq SINE Alu 140 307 -6 2110 128 0 39 chr1 7400212 7400518 -235263835 - AluJo SINE Alu -18 294 1 355 317 7 7 chr1 7400713 7400855 -235263498 - L1M4 LINE L1 -3329 2817 2676 2243 108 0 10 chr1 7401342 7401647 -235262706 + AluSx SINE Alu 1 302 -10 2009 119 0 11 chr1 7401647 7401931 -235262422 + AluSc SINE Alu 1 282 -27 502 218 0 0 chr1 7402047 7402148 -235262205 + U6 snRNA snRNA 1 101 -6 236 230 159 0 chr1 7402388 7402514 -235261839 + L1M4 LINE L1 2897 3042 -3104 2393 85 0 7 chr1 7402610 7402917 -235261436 + AluSc SINE Alu 2 306 -3 416 153 0 12 chr1 7402922 7403007 -235261346 - MER96B DNA MER1_type? -266 151 68 306 164 33 0 chr1 7403210 7403271 -235261082 + MER45 DNA AcHobo 44 106 -1475 239 175 0 0 chr1 7403265 7403305 -235261048 + MER45 DNA AcHobo 1542 1581 0 * 686 239 137 9 chr1 7404225 7404515 -235259838 + MER58B DNA MER1_type 6 341 0 2488 65 0 0 chr1 7405353 7405643 -235258710 + AluY SINE Alu 1 290 -21 2844 80 0 3 chr1 7405674 7406037 -235258316 + THE1B LTR MaLR 1 362 -2 572 310 57 27 chr1 7406290 7406625 -235257728 - L1ME4a LINE L1 -255 5866 5522 2379 100 0 0 chr1 7406642 7406941 -235257412 - AluSg SINE Alu -11 299 1 1652 130 8 8 chr1 7408333 7408606 -235255747 - AluJb SINE Alu 0 319 47 1985 145 3 0 chr1 7409336 7409626 -235254727 + AluJb SINE Alu 1 291 -21 907 117 0 0 chr1 7409634 7409754 -235254599 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 7409772 7409847 -235254506 + A-rich Low_complexity Low_complexity 1 75 0 2488 77 3 0 chr1 7410260 7410559 -235253794 + AluSx SINE Alu 1 300 -12 2549 51 0 0 chr1 7410979 7411274 -235253079 + AluY SINE Alu 1 295 -16 1037 194 0 0 chr1 7411413 7411588 -235252765 - AluJ SINE Alu -13 299 125 65 74 0 0 chr1 7411588 7411723 -235252630 + AT_rich Low_complexity Low_complexity 1 135 0 1766 142 3 42 chr1 7411853 7412142 -235252211 + AluJb SINE Alu 5 282 -30 804 186 0 0 chr1 7412156 7412285 -235252068 - AluJ SINE Alu -169 133 5 252 0 0 0 chr1 7412302 7412330 -235252023 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 200 311 20 66 chr1 7412332 7412483 -235251870 - L3b LINE CR1 -258 1325 1182 2037 135 0 3 chr1 7412751 7413072 -235251281 - AluSg SINE Alu 0 320 1 2246 107 0 0 chr1 7413096 7413385 -235250968 - AluSx SINE Alu -17 295 7 2144 125 3 3 chr1 7413437 7413766 -235250587 + AluSq SINE Alu 1 313 0 1386 74 0 0 chr1 7413766 7413928 -235250425 + AluSg/x SINE Alu 134 295 -17 1670 172 0 47 chr1 7414087 7414406 -235249947 - AluJb SINE Alu -8 304 1 1234 185 14 14 chr1 7414844 7415066 -235249287 - AluJb SINE Alu -10 302 81 902 202 39 6 chr1 7415396 7415574 -235248779 + MIR SINE MIR 19 202 -60 1054 174 10 20 chr1 7415678 7415874 -235248479 - AluJo SINE Alu -13 299 106 2918 72 3 8 chr1 7415874 7416247 -235248106 + THE1C LTR MaLR 1 371 -4 745 183 0 0 chr1 7416247 7416361 -235247992 - AluJo SINE Alu -187 115 1 2291 122 3 3 chr1 7417059 7417371 -235246982 + AluSq SINE Alu 1 312 -1 613 237 34 31 chr1 7417508 7417717 -235246636 - MIR SINE MIR -49 213 7 2489 76 0 0 chr1 7417762 7418063 -235246290 - AluSq SINE Alu -12 301 1 324 282 237 1 chr1 7418861 7419049 -235245304 - MIR SINE MIR -11 251 23 380 279 146 22 chr1 7419325 7419640 -235244713 + L1M4 LINE L1 2148 2501 -3645 2154 108 0 78 chr1 7419640 7419975 -235244378 + AluSx SINE Alu 1 309 -3 439 125 0 9 chr1 7420043 7420306 -235244047 + AluSq SINE Alu 1 309 -4 314 309 31 24 chr1 7420309 7420386 -235243967 + L1M4 LINE L1 2609 2684 -3462 2309 103 0 0 chr1 7420386 7420687 -235243666 - AluSg SINE Alu -9 301 1 314 309 31 24 chr1 7420687 7420897 -235243456 + L1M4 LINE L1 2684 2898 -3248 23 0 0 0 chr1 7420924 7420947 -235243406 + AT_rich Low_complexity Low_complexity 1 23 0 1251 305 74 11 chr1 7420974 7421768 -235242585 + L1M4 LINE L1 3002 3845 -2301 617 213 57 189 chr1 7421798 7422465 -235241888 + MER21B LTR ERV1 13 591 -272 402 259 69 71 chr1 7422625 7422783 -235241570 + L1M4 LINE L1 3890 4047 -2099 2181 127 3 3 chr1 7422783 7423091 -235241262 - AluSq SINE Alu -5 308 1 402 259 69 71 chr1 7423091 7423411 -235240942 + L1M4 LINE L1 4047 4367 -1779 2297 92 3 3 chr1 7423535 7423829 -235240524 - AluSg SINE Alu -16 294 1 2061 98 63 3 chr1 7423831 7424116 -235240237 - AluSg SINE Alu -8 302 1 915 156 38 44 chr1 7424184 7424344 -235240009 + AluJb SINE Alu 137 295 -17 1576 199 42 63 chr1 7424349 7424659 -235239694 + L1ME2 LINE L1 5727 6042 -122 1768 161 10 30 chr1 7424659 7424958 -235239395 - AluJb SINE Alu -19 293 1 1576 199 42 63 chr1 7424958 7424976 -235239377 + L1ME2 LINE L1 6042 6059 -105 2073 110 18 4 chr1 7424976 7425257 -235239096 - AluSg SINE Alu -25 285 1 1576 199 42 63 chr1 7425257 7425374 -235238979 + L1ME2 LINE L1 6059 6164 0 1632 153 38 24 chr1 7425449 7425737 -235238616 - AluJo SINE Alu -9 303 12 1496 111 0 0 chr1 7425754 7425944 -235238409 - AluSg/x SINE Alu -13 299 110 456 131 0 0 chr1 7425944 7426005 -235238348 - AluS SINE Alu -248 63 3 894 143 0 7 chr1 7426015 7426155 -235238198 - AluJb SINE Alu -18 294 156 2217 116 3 3 chr1 7426739 7427040 -235237313 - AluSx SINE Alu -11 301 1 2315 91 0 10 chr1 7427323 7427458 -235236895 + AluSx SINE Alu 1 136 -176 2487 70 0 0 chr1 7427458 7427757 -235236596 + AluY SINE Alu 1 299 -12 2315 91 0 10 chr1 7427757 7427918 -235236435 + AluSx SINE Alu 136 294 -18 1874 160 3 22 chr1 7428000 7428318 -235236035 + AluJb SINE Alu 1 312 0 999 173 0 0 chr1 7428318 7428480 -235235873 + AluJo/FRAM SINE Alu 144 305 -7 505 325 202 22 chr1 7428726 7429092 -235235261 + L2 LINE L2 2840 3271 -1 954 110 0 0 chr1 7429419 7429546 -235234807 - FLAM_C SINE Alu -16 127 1 670 101 0 0 chr1 7429718 7429807 -235234546 + AluSx SINE Alu 4 92 -220 2416 81 0 7 chr1 7429807 7430103 -235234250 + AluY SINE Alu 1 294 -17 1571 92 53 0 chr1 7430101 7430307 -235234046 + AluSx SINE Alu 71 287 -23 * 27 29 0 0 chr1 7431044 7431078 -235233275 + AT_rich Low_complexity Low_complexity 1 34 0 256 188 29 0 chr1 7431252 7431321 -235233032 + CT-rich Low_complexity Low_complexity 2 72 0 1934 128 4 11 chr1 7431720 7431994 -235232359 - AluSq SINE Alu -41 272 1 2214 116 7 19 chr1 7432003 7432176 -235232177 - AluSp SINE Alu -7 306 137 2235 96 28 0 chr1 7432176 7432467 -235231886 - AluSg SINE Alu -9 301 3 2214 116 7 19 chr1 7432467 7432603 -235231750 - AluSp SINE Alu -176 137 1 2139 126 0 0 chr1 7433212 7433505 -235230848 - AluSx SINE Alu -11 301 9 351 0 0 0 chr1 7433551 7433590 -235230763 + (TG)n Simple_repeat Simple_repeat 1 39 0 27 29 0 0 chr1 7434138 7434172 -235230181 + AT_rich Low_complexity Low_complexity 1 34 0 739 157 9 0 chr1 7434172 7434287 -235230066 - AluJb SINE Alu -194 118 3 540 275 30 67 chr1 7434994 7435090 -235229263 - MLT1I LTR MaLR -150 259 161 2117 138 32 35 chr1 7435090 7435466 -235228887 - THE1C LTR MaLR 0 375 1 540 275 30 67 chr1 7435466 7435596 -235228757 - MLT1I LTR MaLR -248 161 42 1574 167 13 45 chr1 7435596 7435735 -235228618 + AluJo SINE Alu 1 143 -169 2040 73 0 8 chr1 7435735 7435994 -235228359 + AluSc SINE Alu 40 296 -13 1574 167 13 45 chr1 7435994 7436165 -235228188 + AluJo SINE Alu 143 301 -11 540 275 30 67 chr1 7436165 7436206 -235228147 - MLT1I LTR MaLR -367 42 1 1895 185 22 53 chr1 7436357 7436536 -235227817 + L1MB8 LINE L1 5724 5907 -271 2401 66 3 13 chr1 7436536 7436837 -235227516 + AluY SINE Alu 2 299 -12 1895 185 22 53 chr1 7436837 7437110 -235227243 + L1MB8 LINE L1 5907 6162 -16 289 264 88 22 chr1 7437493 7437584 -235226769 + L2 LINE L2 3155 3251 -21 217 104 0 42 chr1 7437586 7437634 -235226719 + (TAA)n Simple_repeat Simple_repeat 3 48 0 550 75 0 0 chr1 7437698 7437765 -235226588 - AluSg/x SINE Alu -83 229 163 812 132 5 138 chr1 7437769 7437922 -235226431 + L1MB7 LINE L1 6002 6127 -57 1842 138 38 28 chr1 7437922 7438211 -235226142 + AluJb SINE Alu 1 292 -20 812 132 5 138 chr1 7438211 7438246 -235226107 + L1MB7 LINE L1 6127 6165 -19 2259 121 0 0 chr1 7439582 7439887 -235224466 + AluSq SINE Alu 1 305 -8 1266 260 39 41 chr1 7440196 7440397 -235223956 + MLT2C2 LTR ERVL 1 201 -263 2434 77 3 10 chr1 7440397 7440709 -235223644 + AluSg SINE Alu 1 310 0 2324 109 3 0 chr1 7440711 7441015 -235223338 + AluSp SINE Alu 1 305 -8 1266 260 39 41 chr1 7441015 7441057 -235223296 + MLT2C2 LTR ERVL 202 243 -221 752 172 0 26 chr1 7441057 7441195 -235223158 + L1MB3 LINE L1 6035 6170 -13 1895 193 25 6 chr1 7441195 7441552 -235222801 + MLT1A1 LTR MaLR 1 364 -1 752 172 0 26 chr1 7441552 7441564 -235222789 + L1MB3 LINE L1 6170 6181 -2 1266 260 39 41 chr1 7441564 7441577 -235222776 + MLT2C2 LTR ERVL 243 255 -209 1821 145 0 30 chr1 7441577 7441873 -235222480 + AluJb SINE Alu 1 287 -25 1266 260 39 41 chr1 7441873 7442076 -235222277 + MLT2C2 LTR ERVL 255 464 0 289 304 63 0 chr1 7442847 7442926 -235221427 + MIR SINE MIR 23 106 -102 380 144 10 31 chr1 7443064 7443161 -235221192 + CT-rich Low_complexity Low_complexity 3 97 0 793 149 0 28 chr1 7443161 7443342 -235221011 + (TTC)n Simple_repeat Simple_repeat 2 177 0 1028 105 0 0 chr1 7443344 7443477 -235220876 - FLAM_C SINE Alu 0 133 1 1921 233 136 21 chr1 7443682 7444342 -235220011 - MER21B LTR ERV1 -127 736 1 2440 92 0 0 chr1 7444372 7444677 -235219676 - AluSx SINE Alu -7 305 1 1094 170 0 0 chr1 7445041 7445212 -235219141 + AluJb SINE Alu 130 300 -12 1894 146 3 55 chr1 7446432 7446761 -235217592 + AluJb SINE Alu 1 312 0 5148 110 100 3 chr1 7447288 7448041 -235216312 + LTR12 LTR ERV1 1 826 0 316 321 121 0 chr1 7448193 7448333 -235216020 + MIR3 SINE MIR 51 207 -1 2199 120 0 7 chr1 7448436 7448735 -235215618 - AluSx SINE Alu -15 297 1 1591 161 49 18 chr1 7449067 7449352 -235215001 + AluJb SINE Alu 1 294 -18 2097 187 29 37 chr1 7449595 7449718 -235214635 - L1MD3 LINE L1 0 7995 7873 2326 103 7 0 chr1 7449718 7450018 -235214335 - AluSx SINE Alu -6 306 5 2097 187 29 37 chr1 7450018 7450424 -235213929 - L1MD3 LINE L1 -122 7873 5815 225 108 0 0 chr1 7450425 7450462 -235213891 + (T)n Simple_repeat Simple_repeat 1 37 0 1132 132 5 63 chr1 7450477 7450667 -235213686 - AluJo SINE Alu -133 179 1 598 226 0 0 chr1 7450667 7450791 -235213562 - L1MD3 LINE L1 -519 5825 5702 2142 144 0 0 chr1 7450949 7451255 -235213098 + AluSx SINE Alu 1 306 -6 696 156 0 67 chr1 7451428 7451563 -235212790 + FLAM_C SINE Alu 14 139 -4 225 253 152 72 chr1 7452012 7452047 -235212306 - HAL1 LINE L1 -125 2382 2351 1173 83 6 24 chr1 7452047 7452215 -235212138 - L1PA10 LINE L1 -3 6165 6001 225 253 152 72 chr1 7452215 7452294 -235212059 - HAL1 LINE L1 -156 2351 2280 2190 101 3 10 chr1 7452294 7452592 -235211761 - AluSx SINE Alu -16 296 1 225 253 152 72 chr1 7452592 7453098 -235211255 - HAL1 LINE L1 -227 2280 1675 296 158 66 26 chr1 7453427 7453503 -235210850 - MER5B DNA MER1_type -95 83 5 2362 98 0 19 chr1 7453848 7454165 -235210188 - AluY SINE Alu 0 311 1 1964 135 45 0 chr1 7454214 7454502 -235209851 + AluJb SINE Alu 1 301 -11 278 323 8 53 chr1 7454811 7454944 -235209409 + MIR SINE MIR 56 182 -80 672 205 145 0 chr1 7455288 7455454 -235208899 - MLT1B LTR MaLR 0 390 201 2027 150 0 3 chr1 7455484 7455797 -235208556 - AluJb SINE Alu 0 312 1 2342 80 0 10 chr1 7455847 7456173 -235208180 - AluY SINE Alu 0 311 1 586 176 55 93 chr1 7456309 7456491 -235207862 - MLT1B LTR MaLR -211 179 5 279 0 0 0 chr1 7456493 7456524 -235207829 + (CA)n Simple_repeat Simple_repeat 1 31 0 1829 176 28 11 chr1 7456747 7457110 -235207243 + L1MA4 LINE L1 5914 6282 -18 2201 119 0 0 chr1 7457111 7457405 -235206948 - AluSx SINE Alu -18 294 1 185 62 0 31 chr1 7458314 7458346 -235206007 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1937 141 0 14 chr1 7458348 7458632 -235205721 - AluJb SINE Alu -28 284 5 2300 101 0 0 chr1 7458808 7459104 -235205249 + AluSc SINE Alu 1 296 -13 791 211 78 14 chr1 7459175 7459393 -235204960 + Zaphod DNA AcHobo 3800 4031 0 384 217 30 55 chr1 7459411 7459442 -235204911 - MLT1J LTR MaLR -172 443 413 1803 148 42 0 chr1 7459442 7459726 -235204627 - AluJo SINE Alu -16 296 1 384 217 30 55 chr1 7459726 7459842 -235204511 - MLT1J LTR MaLR -202 413 224 2352 112 0 3 chr1 7459961 7460274 -235204079 - AluSq SINE Alu -1 312 1 312 70 0 0 chr1 7460275 7460318 -235204035 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1075 134 0 0 chr1 7460318 7460467 -235203886 - AluSg/x SINE Alu -27 283 135 286 288 0 12 chr1 7460502 7460582 -235203771 - MLT1L LTR MaLR -536 79 1 2060 118 3 58 chr1 7461483 7461813 -235202540 - AluSx SINE Alu 0 312 1 626 189 39 8 chr1 7462108 7462235 -235202118 - FLAM_C SINE Alu -2 131 1 1937 139 7 10 chr1 7462285 7462588 -235201765 + AluJb SINE Alu 1 302 -10 2369 82 0 13 chr1 7463658 7463963 -235200390 - AluY SINE Alu -10 301 1 2121 120 3 7 chr1 7464270 7464571 -235199782 - AluJo SINE Alu -2 310 11 1643 172 43 13 chr1 7465449 7465752 -235198601 + AluSx SINE Alu 1 312 0 838 281 46 7 chr1 7466050 7466356 -235197997 + MLT2E LTR ERVL 2 319 -309 425 265 75 40 chr1 7466451 7466651 -235197702 + L1MC5 LINE L1 7717 7923 -38 746 152 91 15 chr1 7467925 7468057 -235196296 + FLAM_C SINE Alu 2 143 0 32 43 0 0 chr1 7468057 7468103 -235196250 + AT_rich Low_complexity Low_complexity 1 46 0 533 202 0 0 chr1 7468111 7468200 -235196153 - AluJb SINE Alu -82 230 142 567 301 62 51 chr1 7468212 7468621 -235195732 + MER34 LTR ERV1 50 466 -76 2028 140 3 31 chr1 7468621 7468942 -235195411 - AluJb SINE Alu 0 312 1 567 301 62 51 chr1 7468942 7469020 -235195333 + MER34 LTR ERV1 466 542 0 349 267 67 7 chr1 7469263 7469413 -235194940 - L1MA10 LINE L1 0 6334 6176 2263 100 7 0 chr1 7469458 7469747 -235194606 + AluSx SINE Alu 1 291 -21 2582 79 0 0 chr1 7470159 7470463 -235193890 - AluSx SINE Alu -8 304 1 1785 159 0 40 chr1 7470477 7470779 -235193574 - AluJb SINE Alu -22 290 1 1782 151 10 30 chr1 7470853 7471151 -235193202 + AluJo SINE Alu 14 305 -7 2058 121 109 73 chr1 7471337 7471516 -235192837 + MSTA LTR MaLR 1 172 -256 2541 76 0 0 chr1 7471516 7471819 -235192534 + AluSx SINE Alu 1 303 -9 2058 121 109 73 chr1 7471819 7472051 -235192302 + MSTA LTR MaLR 172 427 -1 2334 94 3 0 chr1 7472161 7472459 -235191894 - AluSx SINE Alu -13 299 1 2180 113 27 0 chr1 7472635 7472936 -235191417 + AluSx SINE Alu 1 309 -3 1900 144 3 41 chr1 7473086 7473405 -235190948 + AluJo SINE Alu 1 307 -5 215 207 0 52 chr1 7473872 7473930 -235190423 + CT-rich Low_complexity Low_complexity 5 59 0 2164 163 14 8 chr1 7473981 7474344 -235190009 - MLT1A1 LTR MaLR 0 365 1 2246 97 82 48 chr1 7474467 7474776 -235189577 + THE1B LTR MaLR 1 325 -39 2274 105 3 0 chr1 7474776 7475080 -235189273 - AluSq SINE Alu -8 305 1 2246 97 82 48 chr1 7475080 7475122 -235189231 + THE1B LTR MaLR 325 364 0 1976 214 165 11 chr1 7475575 7475743 -235188610 + L1MC4 LINE L1 6459 6600 -1442 2197 111 10 7 chr1 7475743 7476041 -235188312 - AluSx SINE Alu -13 299 1 1976 214 165 11 chr1 7476041 7476399 -235187954 + L1MC4 LINE L1 6600 7066 -976 1106 288 186 19 chr1 7476407 7476654 -235187699 + L1MC4 LINE L1 7240 7444 -598 2931 157 30 106 chr1 7476654 7476919 -235187434 + LTR8 LTR ERV1 1 285 -406 2432 89 3 6 chr1 7476919 7477232 -235187121 + AluSp SINE Alu 1 312 -1 2931 157 30 106 chr1 7477232 7477712 -235186641 + LTR8 LTR ERV1 285 689 -2 1106 288 186 19 chr1 7477712 7477927 -235186426 + L1MC4 LINE L1 7444 7622 -420 4004 91 19 2 chr1 7477927 7478468 -235185885 + MER41A LTR ERV1 1 550 -4 1106 288 186 19 chr1 7478468 7478573 -235185780 + L1MC4 LINE L1 7622 7903 -139 304 379 0 0 chr1 7478906 7479022 -235185331 + L2 LINE L2 3197 3312 -1 1928 160 3 3 chr1 7479087 7479399 -235184954 - AluJb SINE Alu 0 312 1 387 230 137 52 chr1 7480746 7481006 -235183347 - LTR48 LTR ERV1 -3 738 387 426 256 16 23 chr1 7481104 7481233 -235183120 - MER34 LTR ERV1 -411 131 4 21 36 0 0 chr1 7481242 7481270 -235183083 + AT_rich Low_complexity Low_complexity 1 28 0 2243 120 0 7 chr1 7481271 7481579 -235182774 + AluSx SINE Alu 1 306 -6 778 236 56 23 chr1 7481674 7481890 -235182463 + MIR SINE MIR 28 250 -12 2293 113 0 3 chr1 7482070 7482380 -235181973 - AluSx SINE Alu -3 309 1 2411 85 3 0 chr1 7483034 7483340 -235181013 + AluY SINE Alu 1 307 -4 300 27 0 0 chr1 7483713 7483750 -235180603 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1859 113 50 7 chr1 7484565 7484847 -235179506 - AluSx SINE Alu -18 294 1 1626 180 65 0 chr1 7485752 7486030 -235178323 - AluJo SINE Alu -16 296 1 292 182 0 39 chr1 7486035 7486112 -235178241 - L1MC2 LINE L1 0 6344 6271 1086 166 10 30 chr1 7486217 7486416 -235177937 + AluJo SINE Alu 16 210 -102 1417 89 0 31 chr1 7486432 7486623 -235177730 - AluSq SINE Alu -52 261 77 937 152 0 26 chr1 7486625 7486776 -235177577 + AluJo/FRAM SINE Alu 156 302 -10 794 131 26 13 chr1 7486779 7487445 -235176908 + (TG)n Simple_repeat Simple_repeat 1 674 0 239 270 34 27 chr1 7487460 7487608 -235176745 + (TG)n Simple_repeat Simple_repeat 1 149 0 690 163 59 0 chr1 7489959 7490094 -235174259 + L1MB4 LINE L1 6038 6180 0 453 226 111 51 chr1 7490242 7490477 -235173876 + HAL1 LINE L1 923 1171 -1336 1042 321 76 35 chr1 7490582 7491146 -235173207 + ERVL LTR ERVL 4144 4730 -1034 207 0 0 0 chr1 7492058 7492081 -235172272 + (CA)n Simple_repeat Simple_repeat 2 24 0 967 257 55 25 chr1 7492961 7493323 -235171030 + L1MC5 LINE L1 7073 7445 -516 2094 268 70 8 chr1 7493438 7494068 -235170285 + ERVL LTR ERVL 24 692 -5072 1503 218 13 7 chr1 7494262 7494560 -235169793 + AluJb SINE Alu 1 300 -12 405 175 25 0 chr1 7494961 7495041 -235169312 - L1 LINE L1 -2515 3631 3550 195 355 23 65 chr1 7495063 7495091 -235169262 - MIR SINE MIR -32 230 202 2083 115 36 0 chr1 7495091 7495370 -235168983 - AluSg SINE Alu -21 289 1 195 355 23 65 chr1 7495370 7495555 -235168798 - MIR SINE MIR -60 202 26 1079 220 45 19 chr1 7495766 7496030 -235168323 + MER58 DNA MER1_type 1 271 -2149 928 119 0 0 chr1 7496130 7496256 -235168097 - AluJb SINE Alu -186 126 1 28 29 0 0 chr1 7496256 7496291 -235168062 + AT_rich Low_complexity Low_complexity 1 35 0 200 270 175 22 chr1 7498023 7498160 -235166193 + MIR SINE MIR 99 256 -6 191 239 80 80 chr1 7498431 7498607 -235165746 - L2 LINE L2 -368 2946 2771 270 128 0 0 chr1 7499655 7499694 -235164659 + Alu SINE Alu 1 39 -264 337 237 172 0 chr1 7500016 7500109 -235164244 + L2 LINE L2 3134 3242 -30 701 305 65 4 chr1 7500665 7500911 -235163442 - MIR SINE MIR 0 262 2 207 0 0 0 chr1 7501469 7501492 -235162861 + (A)n Simple_repeat Simple_repeat 1 23 0 534 286 84 26 chr1 7501677 7501904 -235162449 + MIR SINE MIR 2 241 -21 239 340 28 0 chr1 7503301 7503407 -235160946 + GA-rich Low_complexity Low_complexity 2 110 0 969 253 77 7 chr1 7503660 7503960 -235160393 + L2 LINE L2 1598 1918 -1396 222 286 152 18 chr1 7504967 7505079 -235159274 + L2 LINE L2 3139 3265 -7 260 232 146 0 chr1 7506039 7506121 -235158232 - L2 LINE L2 0 3313 3220 806 228 94 20 chr1 7506338 7506540 -235157813 + MER20 DNA MER1_type 1 217 -2 270 186 35 12 chr1 7506670 7506756 -235157597 + (TA)n Simple_repeat Simple_repeat 2 89 0 678 207 60 0 chr1 7508025 7508175 -235156178 + MIR SINE MIR 77 235 -27 508 290 52 10 chr1 7508319 7508512 -235155841 - MIR SINE MIR -26 236 36 206 250 48 65 chr1 7508567 7508691 -235155662 - L2 LINE L2 -93 3220 3099 2272 119 0 0 chr1 7509202 7509497 -235154856 + AluSx SINE Alu 1 295 -17 535 199 175 18 chr1 7509639 7509805 -235154548 - MIR SINE MIR -39 223 32 249 208 19 0 chr1 7513026 7513079 -235151274 - L2 LINE L2 -215 3057 3004 225 326 90 17 chr1 7513098 7513276 -235151077 - L2 LINE L2 0 3313 3123 447 301 78 5 chr1 7513530 7513749 -235150604 + MIR SINE MIR 16 250 -12 191 245 245 11 chr1 7514507 7514601 -235149752 - MIR SINE MIR -116 146 31 388 211 0 0 chr1 7515129 7515205 -235149148 - MER116 DNA Mariner 0 80 5 215 236 255 0 chr1 7515277 7515383 -235148970 - L2 LINE L2 -11 3302 3170 736 150 0 0 chr1 7515796 7515909 -235148444 + L1PB4 LINE L1 6037 6149 -7 798 228 92 99 chr1 7516726 7517129 -235147224 - MLT1L LTR MaLR -9 606 207 269 268 0 0 chr1 7517105 7517161 -235147192 - MLT1J LTR MaLR -345 166 111 * 225 303 10 81 chr1 7517161 7517204 -235147149 - LTR67 LTR ERVL -386 171 80 4293 97 26 3 chr1 7517536 7518103 -235146250 + THE1A-int LTR MaLR 1001 1580 0 2737 82 6 0 chr1 7518103 7518456 -235145897 + THE1A LTR MaLR 1 355 0 1005 274 255 23 chr1 7519245 7520036 -235144317 - L2 LINE L2 -2094 1220 246 1145 222 14 0 chr1 7520680 7520901 -235143452 + MER58A DNA MER1_type 1 224 0 10866 17 1 0 chr1 7521852 7523871 -235140482 + L1PA3 LINE L1 4131 6150 -5 2008 88 11 18 chr1 7524269 7524542 -235139811 - AluSp SINE Alu -42 271 1 2278 97 3 0 chr1 7525635 7525943 -235138410 + AluSc SINE Alu 1 309 0 2063 105 4 0 chr1 7525985 7526261 -235138092 + AluSx SINE Alu 1 277 -35 2051 134 3 0 chr1 7526322 7526621 -235137732 + AluSx SINE Alu 1 300 -12 2430 81 10 10 chr1 7526974 7527284 -235137069 + AluSg SINE Alu 1 310 0 21 57 0 0 chr1 7527810 7527845 -235136508 + AT_rich Low_complexity Low_complexity 1 35 0 2295 99 3 0 chr1 7527849 7528143 -235136210 - AluSq SINE Alu -18 295 1 2091 92 56 0 chr1 7528578 7528862 -235135491 - AluSg SINE Alu -10 300 1 1691 155 6 75 chr1 7530525 7530886 -235133467 + MER2 DNA MER2_type 2 337 -8 528 276 105 20 chr1 7530903 7531055 -235133298 + MIR SINE MIR 91 255 -7 200 364 35 28 chr1 7531065 7531208 -235133145 - L2 LINE L2 -540 2774 2631 1022 92 32 38 chr1 7531229 7531414 -235132939 - LTR54 LTR ERV1 0 510 327 414 209 35 52 chr1 7531406 7531521 -235132832 - Tigger1 DNA MER2_type -2302 116 4 * 2027 142 0 7 chr1 7531814 7532116 -235132237 + AluSx SINE Alu 2 301 -11 2145 117 7 0 chr1 7532363 7532653 -235131700 - AluSx SINE Alu -20 292 1 260 179 13 0 chr1 7532857 7532935 -235131418 + CT-rich Low_complexity Low_complexity 1 79 0 375 231 74 91 chr1 7532947 7533143 -235131210 + L2 LINE L2 3076 3269 -44 1886 83 8 38 chr1 7533143 7533408 -235130945 - AluSc SINE Alu -16 293 37 375 231 74 91 chr1 7533408 7533453 -235130900 + L2 LINE L2 3269 3313 0 696 279 104 5 chr1 7534514 7534736 -235129617 - MIR SINE MIR -12 250 7 262 294 39 0 chr1 7536830 7536932 -235127421 - HAL1 LINE L1 -83 2424 2319 1660 176 22 45 chr1 7536933 7537246 -235127107 - AluJb SINE Alu -6 306 1 874 230 11 0 chr1 7537254 7537445 -235126908 - AluJb SINE Alu -2 310 118 1769 186 4 0 chr1 7537525 7537800 -235126553 - AluJb SINE Alu -31 281 6 943 213 163 80 chr1 7537832 7537913 -235126440 - HAL1 LINE L1 -297 2210 2137 2296 74 3 0 chr1 7537913 7538197 -235126156 - AluSq SINE Alu -28 285 1 943 213 163 80 chr1 7538197 7538255 -235126098 - HAL1 LINE L1 -370 2137 2085 2206 107 0 0 chr1 7538255 7538545 -235125808 + AluSc SINE Alu 1 290 -19 943 213 163 80 chr1 7538545 7539042 -235125311 - HAL1 LINE L1 -422 2085 1520 23 0 0 0 chr1 7539255 7539278 -235125075 + AT_rich Low_complexity Low_complexity 1 23 0 2215 111 0 0 chr1 7539656 7539975 -235124378 - AluSq SINE Alu 0 319 1 24 0 0 0 chr1 7539979 7540003 -235124350 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr1 7540110 7540146 -235124207 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr1 7540615 7540652 -235123701 + AT_rich Low_complexity Low_complexity 1 37 0 2176 110 0 0 chr1 7542240 7542530 -235121823 - AluSx SINE Alu 0 312 23 2324 80 10 0 chr1 7542612 7542912 -235121441 + AluY SINE Alu 1 303 -8 248 296 82 22 chr1 7543630 7543765 -235120588 + L1MC/D LINE L1 5682 5824 -1984 818 128 14 43 chr1 7544009 7544150 -235120203 + FLAM_C SINE Alu 1 137 -6 2505 61 0 26 chr1 7544208 7544521 -235119832 + AluY SINE Alu 2 306 -5 1871 105 83 78 chr1 7544605 7544801 -235119552 - THE1B LTR MaLR 0 364 164 1907 135 6 52 chr1 7544801 7545127 -235119226 + AluSx SINE Alu 1 311 -1 1871 105 83 78 chr1 7545127 7545291 -235119062 - THE1B LTR MaLR -200 164 2 1371 181 115 0 chr1 7545311 7545615 -235118738 - MER44D DNA MER2_type 0 609 1 698 176 50 0 chr1 7547135 7547254 -235117099 - FLAM_A SINE Alu -8 125 1 2409 81 10 0 chr1 7547285 7547592 -235116761 - AluY SINE Alu -1 310 1 292 320 0 0 chr1 7547898 7547973 -235116380 - L2 LINE L2 -194 3078 3004 231 335 66 36 chr1 7548780 7548947 -235115406 + MIR SINE MIR 37 208 -54 375 23 0 0 chr1 7551815 7551859 -235112494 + (TG)n Simple_repeat Simple_repeat 2 45 0 2298 106 0 0 chr1 7552818 7553120 -235111233 - AluSg SINE Alu -6 304 3 443 274 137 21 chr1 7553785 7554019 -235110334 + MIR SINE MIR 2 262 0 * 469 246 105 9 chr1 7553987 7554101 -235110252 - L2 LINE L2 -22 3291 3167 461 133 0 36 chr1 7554151 7554234 -235110119 + AluJ/FRAM SINE Alu 224 303 -9 730 146 0 83 chr1 7554329 7554473 -235109880 + FLAM_C SINE Alu 1 132 -1 22 56 0 0 chr1 7555028 7555064 -235109289 + AT_rich Low_complexity Low_complexity 1 36 0 417 91 15 0 chr1 7555064 7555130 -235109223 + MER41B LTR ERV1 481 547 -88 2212 82 14 0 chr1 7555459 7555750 -235108603 + AluY SINE Alu 1 295 -16 21 36 0 0 chr1 7555793 7555821 -235108532 + AT_rich Low_complexity Low_complexity 1 28 0 2202 114 0 3 chr1 7556214 7556520 -235107833 - AluSx SINE Alu -7 305 1 1786 166 7 3 chr1 7556527 7556817 -235107536 - AluSx SINE Alu -21 291 1 4493 206 44 16 chr1 7556817 7557374 -235106979 - L1P4 LINE L1 -383 5785 5245 1873 141 3 36 chr1 7557374 7557678 -235106675 - AluSx SINE Alu -18 294 1 4493 206 44 16 chr1 7557678 7558373 -235105980 - L1P4 LINE L1 -923 5245 4477 2142 136 0 0 chr1 7558373 7558667 -235105686 - AluSg SINE Alu -16 294 1 4493 206 44 16 chr1 7558667 7559057 -235105296 - L1P4 LINE L1 -1691 4477 4099 4471 161 29 9 chr1 7559219 7560085 -235104268 - L1MC2 LINE L1 -1 6343 5461 821 140 54 59 chr1 7560434 7560497 -235103856 - MER2 DNA MER2_type -160 185 123 2065 138 3 7 chr1 7560497 7560802 -235103551 + AluSx SINE Alu 1 304 -8 821 140 54 59 chr1 7560802 7560924 -235103429 - MER2 DNA MER2_type -222 123 1 2271 85 0 0 chr1 7561951 7562268 -235102085 + AluSc SINE Alu 1 317 0 1524 195 8 57 chr1 7562690 7563075 -235101278 + MLT1A2 LTR MaLR 1 366 -8 333 171 0 45 chr1 7564092 7564180 -235100173 - L1MB8 LINE L1 -1 6177 6094 1235 144 14 0 chr1 7564180 7564395 -235099958 - MER47A DNA MER2_type -1 365 148 236 255 0 0 chr1 7564401 7564448 -235099905 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 1051 188 99 14 chr1 7564455 7564553 -235099800 - AluJo SINE Alu -66 246 158 1931 126 23 26 chr1 7564553 7564863 -235099490 - AluSx SINE Alu -3 309 1 1051 188 99 14 chr1 7564863 7564987 -235099366 - AluJo SINE Alu -154 158 5 601 226 0 8 chr1 7564987 7565120 -235099233 - MER47A DNA MER2_type -234 132 1 1067 269 161 81 chr1 7565657 7566382 -235097971 + L2 LINE L2 1230 1895 -1419 2326 101 0 0 chr1 7566382 7566679 -235097674 - AluSq SINE Alu -16 297 1 1067 269 161 81 chr1 7566679 7566864 -235097489 + L2 LINE L2 1895 2064 -1250 1929 169 0 7 chr1 7566864 7567166 -235097187 + AluJb SINE Alu 1 300 -12 1067 269 161 81 chr1 7567166 7567319 -235097034 + L2 LINE L2 2064 2380 -934 1296 63 0 84 chr1 7567517 7567707 -235096646 - AluY SINE Alu -137 174 1 1802 174 3 0 chr1 7567989 7568271 -235096082 + AluJo SINE Alu 1 283 -29 311 64 0 21 chr1 7568271 7568318 -235096035 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 198 0 0 0 chr1 7569181 7569203 -235095150 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 1934 138 3 0 chr1 7569203 7569486 -235094867 - AluSq SINE Alu -29 284 1 21 0 0 0 chr1 7569486 7569507 -235094846 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr1 7570088 7570115 -235094238 + (T)n Simple_repeat Simple_repeat 1 27 0 1086 176 40 10 chr1 7574030 7574229 -235090124 + MER3 DNA MER1_type 1 205 -4 1805 86 11 156 chr1 7574424 7574783 -235089570 - AluSc SINE Alu -2 307 1 479 284 44 38 chr1 7575306 7575489 -235088864 - MIR SINE MIR -14 248 65 2342 95 13 0 chr1 7575693 7575999 -235088354 - AluSx SINE Alu -2 310 1 1414 167 31 0 chr1 7577132 7577359 -235086994 + MER46A DNA MER2_type 1 234 -2 528 16 0 0 chr1 7577359 7577420 -235086933 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1142 123 0 0 chr1 7577420 7577574 -235086779 - AluSq SINE Alu -27 286 133 470 113 0 0 chr1 7577574 7577636 -235086717 - AluJ SINE Alu -131 181 120 850 172 0 8 chr1 7577637 7577771 -235086582 - AluJ SINE Alu -169 133 1 27 49 0 0 chr1 7579058 7579099 -235085254 + AT_rich Low_complexity Low_complexity 1 41 0 1557 168 51 7 chr1 7579106 7579380 -235084973 - AluJb SINE Alu -21 291 6 2203 92 11 0 chr1 7579751 7580056 -235084297 + AluSq SINE Alu 1 308 0 1572 200 3 3 chr1 7580673 7580973 -235083380 + AluJo SINE Alu 1 300 -12 725 147 0 66 chr1 7581023 7581159 -235083194 - FLAM_C SINE Alu -16 127 1 996 233 324 29 chr1 7581965 7582792 -235081561 + L2 LINE L2 2183 3310 -3 482 110 30 70 chr1 7583680 7583748 -235080605 - L1MB7 LINE L1 0 6184 6115 1672 130 3 98 chr1 7583748 7584064 -235080289 + AluJb SINE Alu 1 286 -26 482 0 17 0 chr1 7584064 7584122 -235080231 + (CA)n Simple_repeat Simple_repeat 2 60 0 482 110 30 70 chr1 7584122 7584152 -235080201 - L1MB7 LINE L1 -67 6117 6089 356 0 23 0 chr1 7584178 7584222 -235080131 + (CA)n Simple_repeat Simple_repeat 2 46 0 1702 190 36 12 chr1 7584223 7584600 -235079753 - L1MB8 LINE L1 -63 6115 5728 1171 190 14 23 chr1 7585076 7585297 -235079056 + MER20 DNA MER1_type 1 219 0 2133 111 0 7 chr1 7585446 7585754 -235078599 - AluSx SINE Alu 0 306 1 550 311 34 0 chr1 7587068 7587245 -235077108 + MIR SINE MIR 2 184 -78 303 153 141 59 chr1 7587348 7587433 -235076920 + MIR SINE MIR 171 262 0 709 353 70 26 chr1 7587747 7588474 -235075879 - L2 LINE L2 -38 3234 2475 791 136 0 9 chr1 7588474 7588584 -235075769 + AluJo SINE Alu 49 157 -155 329 310 148 35 chr1 7588599 7588970 -235075383 - L2 LINE L2 -963 2351 1939 214 258 147 85 chr1 7589035 7589388 -235074965 - L2 LINE L2 -79 3193 2819 326 143 14 29 chr1 7589436 7589506 -235074847 + L1MB8 LINE L1 6110 6178 0 237 298 16 99 chr1 7589536 7589657 -235074696 - L2 LINE L2 -625 2689 2579 504 270 44 53 chr1 7590151 7590377 -235073976 - MIR SINE MIR -11 251 28 1487 181 0 77 chr1 7590428 7590754 -235073599 - AluJo SINE Alu -11 301 1 1002 254 195 45 chr1 7591265 7592254 -235072099 + L2 LINE L2 2169 3309 -4 208 255 174 67 chr1 7592557 7592706 -235071647 + MIR SINE MIR 28 192 -70 30 83 0 0 chr1 7593029 7593101 -235071252 + AT_rich Low_complexity Low_complexity 1 72 0 2171 122 0 0 chr1 7593568 7593872 -235070481 - AluSx SINE Alu -8 304 1 2326 101 3 0 chr1 7594363 7594671 -235069682 - AluY SINE Alu -2 309 1 264 308 132 0 chr1 7594856 7594947 -235069406 + L2 LINE L2 3168 3270 -2 26 0 0 0 chr1 7594984 7595010 -235069343 + AT_rich Low_complexity Low_complexity 1 26 0 2059 127 20 0 chr1 7595288 7595580 -235068773 - AluSx SINE Alu -14 298 1 2338 92 0 16 chr1 7595808 7596124 -235068229 - AluY SINE Alu 0 311 1 733 197 0 8 chr1 7596182 7596314 -235068039 - FLAM_C SINE Alu -2 131 1 192 226 0 0 chr1 7596856 7596918 -235067435 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 2257 105 3 0 chr1 7597639 7597934 -235066419 + AluSx SINE Alu 1 296 -16 1929 128 7 17 chr1 7598231 7598519 -235065834 + AluJb SINE Alu 24 308 -4 1416 169 32 18 chr1 7598809 7599087 -235065266 + AluJo SINE Alu 1 282 -30 2384 55 41 0 chr1 7599428 7599719 -235064634 - AluY SINE Alu -8 303 1 261 235 147 20 chr1 7599937 7600039 -235064314 - MER103 DNA DNA -7 159 45 578 218 0 0 chr1 7600148 7600249 -235064104 + FAM SINE Alu 2 102 -83 2305 152 24 8 chr1 7600307 7600676 -235063677 + THE1C LTR MaLR 1 375 0 875 225 25 0 chr1 7601165 7601325 -235063028 + FRAM SINE Alu 1 164 -2 897 194 25 0 chr1 7601404 7601564 -235062789 - AluJb SINE Alu -11 301 138 1547 201 15 0 chr1 7601740 7602013 -235062340 - AluJo SINE Alu -35 277 1 1931 103 3 125 chr1 7602038 7602234 -235062119 - AluSx SINE Alu -9 293 151 2381 82 0 0 chr1 7602234 7602528 -235061825 - AluSc SINE Alu -15 294 1 1931 103 3 125 chr1 7602528 7602660 -235061693 - AluSx SINE Alu -151 151 5 182 200 33 17 chr1 7603074 7603134 -235061219 + L2 LINE L2 2912 2972 -342 2358 90 0 0 chr1 7603398 7603697 -235060656 - AluSx SINE Alu -13 299 1 1811 167 0 0 chr1 7604613 7604900 -235059453 + AluJb SINE Alu 1 287 -25 865 207 177 10 chr1 7604910 7605177 -235059176 + L1ME3A LINE L1 5852 6161 -9 348 24 0 0 chr1 7605466 7605507 -235058846 + (CA)n Simple_repeat Simple_repeat 2 42 0 1355 192 77 133 chr1 7605924 7606053 -235058300 - MLT1C LTR MaLR 0 467 332 1317 162 178 0 chr1 7606053 7606306 -235058047 - AluJo SINE Alu -14 298 1 1355 192 77 133 chr1 7606306 7606578 -235057775 - MLT1C LTR MaLR -135 332 97 1575 195 6 31 chr1 7606578 7606896 -235057457 - AluJo SINE Alu -2 310 1 1355 192 77 133 chr1 7606896 7606988 -235057365 - MLT1C LTR MaLR -370 97 1 463 262 154 35 chr1 7607469 7607633 -235056720 + MER5A DNA MER1_type 2 188 -1 267 265 167 61 chr1 7608005 7608137 -235056216 - MIR SINE MIR -54 208 63 663 188 0 0 chr1 7608350 7608451 -235055902 + FLAM_A SINE Alu 1 101 -41 325 264 97 21 chr1 7609922 7610066 -235054287 + L2 LINE L2 852 1006 -2308 262 295 115 0 chr1 7610099 7610177 -235054176 + L2 LINE L2 3202 3288 -25 431 214 111 0 chr1 7610834 7610951 -235053402 + MIR SINE MIR 111 240 -22 29 0 0 0 chr1 7611050 7611079 -235053274 + AT_rich Low_complexity Low_complexity 1 29 0 960 188 0 12 chr1 7612967 7613137 -235051216 - AluJb SINE Alu -9 303 136 2229 73 59 0 chr1 7614070 7614359 -235049994 + AluY SINE Alu 1 306 -5 1278 195 130 38 chr1 7614640 7615097 -235049256 + Charlie4a DNA MER1_type 3 493 -15 27 0 0 0 chr1 7616164 7616191 -235048162 + AT_rich Low_complexity Low_complexity 1 27 0 726 223 60 107 chr1 7616327 7616568 -235047785 - MLT1J LTR MaLR -220 291 40 207 69 0 0 chr1 7616568 7616597 -235047756 + (TTA)n Simple_repeat Simple_repeat 2 30 0 978 173 13 0 chr1 7616599 7616755 -235047598 - FRAM SINE Alu -8 158 1 726 223 60 107 chr1 7616755 7616810 -235047543 - MLT1J LTR MaLR -472 39 6 2150 96 7 0 chr1 7616855 7617204 -235047149 + AluSp SINE Alu 1 351 0 317 299 110 16 chr1 7617222 7617349 -235047004 + L2 LINE L2 3127 3265 -7 2381 76 0 0 chr1 7618107 7618396 -235045957 + AluY SINE Alu 1 289 -22 1740 173 7 7 chr1 7619191 7619497 -235044856 - AluJb SINE Alu -6 306 1 300 137 0 0 chr1 7619664 7619715 -235044638 + (TG)n Simple_repeat Simple_repeat 2 52 0 1607 183 11 21 chr1 7619719 7620004 -235044349 - AluJo SINE Alu -30 282 1 819 195 6 30 chr1 7621724 7621888 -235042465 - FRAM SINE Alu -16 160 1 709 183 0 51 chr1 7622361 7622378 -235041975 - FRAM SINE Alu -150 162 146 288 77 0 0 chr1 7622378 7622417 -235041936 + (TATG)n Simple_repeat Simple_repeat 1 39 0 709 183 0 51 chr1 7622417 7622536 -235041817 - FRAM SINE Alu -166 146 33 1689 101 36 8 chr1 7625528 7625775 -235038578 - AluSx SINE Alu -15 297 44 26 0 0 0 chr1 7625775 7625801 -235038552 + AT_rich Low_complexity Low_complexity 1 26 0 3416 86 52 7 chr1 7626259 7626724 -235037629 - LTR19A LTR ERV1 0 486 1 810 172 0 0 chr1 7627538 7627660 -235036693 + FLAM_C SINE Alu 2 123 -20 559 157 0 0 chr1 7627885 7627968 -235036385 + AluJ/FLAM SINE Alu 2 84 -228 216 0 0 0 chr1 7627978 7628002 -235036351 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 180 250 150 0 chr1 7628426 7628486 -235035867 + MIR SINE MIR 82 150 -112 1969 130 0 14 chr1 7629689 7629973 -235034380 - AluSx SINE Alu -27 285 6 225 0 0 0 chr1 7630631 7630656 -235033697 + (T)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr1 7630818 7630846 -235033507 + AT_rich Low_complexity Low_complexity 1 28 0 392 240 10 20 chr1 7631930 7632030 -235032323 - MER94 DNA DNA -34 100 2 199 354 46 39 chr1 7633124 7633254 -235031099 - L2 LINE L2 -9 3263 3133 411 269 80 45 chr1 7634723 7634924 -235029429 + MIR SINE MIR 16 223 -39 222 244 35 58 chr1 7634981 7635067 -235029286 + L2 LINE L2 3229 3312 -1 2151 100 10 3 chr1 7635782 7636072 -235028281 - AluSq SINE Alu -13 300 9 23 33 0 0 chr1 7636850 7636880 -235027473 + AT_rich Low_complexity Low_complexity 1 30 0 189 74 0 0 chr1 7637338 7637365 -235026988 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 101 0 0 chr1 7640527 7640606 -235023747 + AT_rich Low_complexity Low_complexity 1 79 0 1932 165 0 0 chr1 7641612 7641921 -235022432 - AluSx SINE Alu -3 309 1 2026 127 3 7 chr1 7641928 7642228 -235022125 - AluY SINE Alu -10 301 3 584 274 11 22 chr1 7642311 7642490 -235021863 + MIR SINE MIR 85 261 -1 2248 93 3 22 chr1 7642523 7642834 -235021519 - AluSg SINE Alu -5 305 1 1167 178 5 10 chr1 7643075 7643283 -235021070 + AluJb SINE Alu 3 209 -103 21 36 0 0 chr1 7643393 7643421 -235020932 + AT_rich Low_complexity Low_complexity 1 28 0 2230 121 3 0 chr1 7643900 7644206 -235020147 - AluSx SINE Alu -5 307 1 1036 90 23 0 chr1 7644206 7644339 -235020014 - AluSq/x SINE Alu -177 136 1 1530 227 20 7 chr1 7644623 7644918 -235019435 - AluJb SINE Alu -3 299 1 1296 166 3 124 chr1 7644955 7645118 -235019235 + AluSp SINE Alu 1 99 -214 2296 113 0 0 chr1 7645118 7645418 -235018935 + AluSx SINE Alu 1 300 -12 1296 166 3 124 chr1 7645418 7645609 -235018744 + AluSp SINE Alu 99 312 -1 1758 173 3 10 chr1 7645763 7646064 -235018289 - AluJb SINE Alu -13 299 1 1405 189 111 4 chr1 7647026 7647296 -235017057 + AluJo SINE Alu 1 299 -13 2151 100 10 3 chr1 7648111 7648401 -235015952 - AluSq SINE Alu -13 300 9 23 33 0 0 chr1 7649179 7649209 -235015144 + AT_rich Low_complexity Low_complexity 1 30 0 189 74 0 0 chr1 7649667 7649694 -235014659 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 101 0 0 chr1 7652856 7652935 -235011418 + AT_rich Low_complexity Low_complexity 1 79 0 1932 165 0 0 chr1 7653941 7654250 -235010103 - AluSx SINE Alu -3 309 1 2026 127 3 7 chr1 7654257 7654557 -235009796 - AluY SINE Alu -10 301 3 584 274 11 22 chr1 7654640 7654819 -235009534 + MIR SINE MIR 85 261 -1 2248 93 3 22 chr1 7654852 7655163 -235009190 - AluSg SINE Alu -5 305 1 1167 178 5 10 chr1 7655404 7655612 -235008741 + AluJb SINE Alu 3 209 -103 21 36 0 0 chr1 7655722 7655750 -235008603 + AT_rich Low_complexity Low_complexity 1 28 0 2230 121 3 0 chr1 7656229 7656535 -235007818 - AluSx SINE Alu -5 307 1 1026 98 23 0 chr1 7656535 7656668 -235007685 - AluSq/x SINE Alu -177 136 1 1277 206 4 8 chr1 7656951 7657203 -235007150 - AluJo SINE Alu -13 299 49 709 353 70 26 chr1 7657203 7657930 -235006423 + L2 LINE L2 2475 3234 -38 303 153 141 59 chr1 7658244 7658329 -235006024 - MIR SINE MIR 0 262 171 550 311 34 0 chr1 7658432 7658609 -235005744 - MIR SINE MIR -78 184 2 2134 111 0 7 chr1 7659923 7660231 -235004122 + AluSx SINE Alu 1 306 0 920 191 16 31 chr1 7660380 7660574 -235003779 - MER20 DNA MER1_type 0 219 29 2285 93 0 3 chr1 7660692 7660982 -235003371 - AluSg SINE Alu -21 289 1 604 186 7 57 chr1 7660982 7661122 -235003231 + MER58B DNA MER1_type 204 336 -5 242 264 97 0 chr1 7661713 7661785 -235002568 + MIR SINE MIR 38 116 -92 2368 101 0 0 chr1 7661794 7662102 -235002251 - AluSx SINE Alu -4 308 1 657 216 157 33 chr1 7662105 7662258 -235002095 - AluSg/x SINE Alu -19 293 122 341 219 0 14 chr1 7662288 7662361 -235001992 - MER5A DNA MER1_type -1 188 117 2692 235 50 44 chr1 7662373 7663234 -235001119 + L1MCb LINE L1 13 878 -5167 264 30 0 0 chr1 7663234 7663267 -235001086 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2257 92 3 3 chr1 7663269 7663562 -235000791 - AluY SINE Alu -18 293 1 2938 162 95 67 chr1 7663566 7664200 -235000153 + L1MC2 LINE L1 5595 6210 -134 195 100 0 0 chr1 7664200 7664230 -235000123 + (TG)n Simple_repeat Simple_repeat 1 30 0 2938 162 95 67 chr1 7664230 7664265 -235000088 + L1MC2 LINE L1 6210 6243 -101 2701 38 0 13 chr1 7664265 7664580 -234999773 - AluY SINE Alu 0 311 1 2938 162 95 67 chr1 7664580 7664626 -234999727 + L1MC2 LINE L1 6243 6331 -13 475 262 74 0 chr1 7664652 7664774 -234999579 - MER5A DNA MER1_type -58 131 1 1539 187 257 22 chr1 7664835 7665273 -234999080 + MLT1F LTR MaLR 1 502 -3 1878 93 43 25 chr1 7665288 7665593 -234998760 + AluSq SINE Alu 1 310 0 555 258 74 0 chr1 7666020 7666183 -234998170 + MIR SINE MIR 87 261 -1 188 337 171 21 chr1 7666185 7666378 -234997975 + L2 LINE L2 2838 3059 -213 23 0 0 0 chr1 7666416 7666439 -234997914 + AT_rich Low_complexity Low_complexity 1 23 0 271 270 0 60 chr1 7666467 7666567 -234997786 - MIR SINE MIR 0 262 169 22 0 0 0 chr1 7666759 7666781 -234997572 + AT_rich Low_complexity Low_complexity 1 22 0 513 265 129 34 chr1 7666813 7667037 -234997316 - L1MC4a LINE L1 -1791 6017 5757 2309 122 135 3 chr1 7667037 7667415 -234996938 + MSTA LTR MaLR 1 428 0 513 265 129 34 chr1 7667415 7667484 -234996869 - L1MC4a LINE L1 -2051 5757 5696 2344 70 0 3 chr1 7667648 7667966 -234996387 - AluY SINE Alu 0 317 1 207 0 0 0 chr1 7668312 7668335 -234996018 + (A)n Simple_repeat Simple_repeat 1 23 0 901 118 0 59 chr1 7669043 7669195 -234995158 - FLAM_C SINE Alu 0 143 1 830 120 0 0 chr1 7669730 7669855 -234994498 - AluSg/x SINE Alu 0 312 188 669 124 0 0 chr1 7669855 7669944 -234994409 - AluJ/FLAM SINE Alu -222 90 2 183 304 51 13 chr1 7670017 7670096 -234994257 + L2 LINE L2 3169 3250 -22 382 200 35 12 chr1 7670100 7670185 -234994168 - MIR SINE MIR -12 250 164 615 278 124 51 chr1 7670497 7670925 -234993428 - LTR41 LTR ERVL -6 767 309 980 166 29 6 chr1 7670962 7671137 -234993216 - LTR41 LTR ERVL -594 179 1 250 280 220 0 chr1 7671150 7671268 -234993085 + L2 LINE L2 2427 2570 -744 45 19 0 0 chr1 7671300 7671352 -234993001 + AT_rich Low_complexity Low_complexity 1 52 0 221 234 8 153 chr1 7671395 7671519 -234992834 + L2 LINE L2 2916 3021 -251 5011 151 61 15 chr1 7671637 7672684 -234991669 - Tigger3b DNA MER2_type -57 1174 3 263 271 59 93 chr1 7672718 7672836 -234991517 + L2 LINE L2 3154 3267 -5 2215 135 10 56 chr1 7672842 7673235 -234991118 + THE1C LTR MaLR 1 375 0 1718 119 0 140 chr1 7674010 7674346 -234990007 + AluJb SINE Alu 13 301 -11 1030 176 0 12 chr1 7674573 7674743 -234989610 + AluJo SINE Alu 1 168 -144 1621 134 94 29 chr1 7674745 7675020 -234989333 - AluSx SINE Alu -19 293 1 783 255 98 57 chr1 7675144 7675512 -234988841 + L2 LINE L2 2930 3312 -1 2119 169 42 0 chr1 7676517 7676877 -234987476 + THE1C LTR MaLR 1 375 0 1657 189 17 0 chr1 7677247 7677543 -234986810 + AluJo SINE Alu 1 301 -11 276 340 0 10 chr1 7677829 7677932 -234986421 + MLT1K LTR MaLR 185 286 -302 988 157 45 0 chr1 7677935 7678113 -234986240 - MER47A DNA MER2_type -177 189 4 189 194 75 32 chr1 7678196 7678289 -234986064 - L2 LINE L2 -358 2914 2818 349 143 13 13 chr1 7678307 7678384 -234985969 + GA-rich Low_complexity Low_complexity 1 77 0 2356 59 35 0 chr1 7678472 7678760 -234985593 - AluY SINE Alu -13 298 1 2158 100 0 21 chr1 7679246 7679537 -234984816 - AluSx SINE Alu -27 285 1 430 331 24 24 chr1 7679573 7679742 -234984611 - MIR SINE MIR -58 204 36 647 224 22 92 chr1 7680431 7680659 -234983694 - MIR SINE MIR 0 262 51 487 311 104 65 chr1 7680730 7681329 -234983024 - L2 LINE L2 0 3313 2667 2008 152 3 0 chr1 7681329 7681632 -234982721 + AluSx SINE Alu 1 304 -8 487 311 104 65 chr1 7681632 7681686 -234982667 - L2 LINE L2 -646 2667 2617 221 231 115 0 chr1 7681688 7681740 -234982613 + L2 LINE L2 3256 3313 0 281 282 13 0 chr1 7682736 7682814 -234981539 - MIR SINE MIR -21 241 163 544 197 249 28 chr1 7683441 7683654 -234980699 - MIR SINE MIR 0 262 3 21 0 0 0 chr1 7684468 7684489 -234979864 + AT_rich Low_complexity Low_complexity 1 21 0 493 196 181 7 chr1 7686892 7687030 -234977323 - MER69A DNA AcHobo -15 162 1 946 134 15 0 chr1 7687242 7687376 -234976977 + AluJo SINE Alu 1 136 -176 807 191 7 15 chr1 7687473 7687609 -234976744 + AluJo SINE Alu 1 135 -177 2219 113 10 3 chr1 7688269 7688571 -234975782 + AluSq SINE Alu 1 304 -9 2454 132 58 127 chr1 7689273 7689551 -234974802 + L1MA8 LINE L1 5711 6007 -284 1993 114 14 3 chr1 7689551 7689840 -234974513 - AluSg SINE Alu -18 292 1 1560 135 36 32 chr1 7689847 7690099 -234974254 - AluJo SINE Alu -11 301 49 2454 132 58 127 chr1 7690099 7690433 -234973920 + L1MA8 LINE L1 6013 6288 -3 692 154 9 0 chr1 7690482 7690592 -234973761 + FLAM_A SINE Alu 28 138 -4 351 0 0 0 chr1 7691298 7691337 -234973016 + (CA)n Simple_repeat Simple_repeat 2 40 0 2454 73 0 3 chr1 7691485 7691786 -234972567 - AluSq SINE Alu -13 300 1 259 167 0 0 chr1 7692077 7692125 -234972228 - Alu SINE Alu -4 298 251 696 332 23 0 chr1 7692314 7692570 -234971783 - MIR SINE MIR 0 262 1 2333 99 0 13 chr1 7693095 7693407 -234970946 + AluSp SINE Alu 1 308 -5 279 296 34 126 chr1 7693550 7693844 -234970509 + L2 LINE L2 3005 3271 -1 2033 138 0 7 chr1 7694810 7695115 -234969238 + AluSx SINE Alu 1 303 -9 2349 81 0 7 chr1 7695118 7695415 -234968938 + AluSc SINE Alu 1 295 -14 215 294 141 0 chr1 7696028 7696113 -234968240 - L2 LINE L2 -207 3065 2969 3947 181 48 19 chr1 7696180 7696986 -234967367 + L1MB8 LINE L1 5349 6178 0 2070 131 10 13 chr1 7696996 7697132 -234967221 + AluSq SINE Alu 1 136 -177 2321 89 0 0 chr1 7697132 7697423 -234966930 + AluSc SINE Alu 2 292 -17 2070 131 10 13 chr1 7697423 7697600 -234966753 + AluSq SINE Alu 136 313 0 2066 135 3 22 chr1 7697718 7698036 -234966317 + AluSx SINE Alu 1 312 0 186 243 103 96 chr1 7698593 7698729 -234965624 - L2 LINE L2 -1842 1472 1336 1745 183 10 16 chr1 7698780 7699092 -234965261 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr1 7699136 7699159 -234965194 + AT_rich Low_complexity Low_complexity 1 23 0 2000 110 0 27 chr1 7699159 7699459 -234964894 + AluSx SINE Alu 21 312 0 1034 213 56 0 chr1 7699899 7700096 -234964257 + MER3 DNA MER1_type 2 209 0 782 211 60 22 chr1 7700404 7700589 -234963764 + MER58A DNA MER1_type 1 192 -32 1618 167 24 17 chr1 7700950 7701238 -234963115 - AluJo SINE Alu -22 290 1 2249 118 0 3 chr1 7701244 7701550 -234962803 - AluSx SINE Alu -7 305 1 28 0 0 0 chr1 7701761 7701789 -234962564 + AT_rich Low_complexity Low_complexity 1 28 0 271 275 296 16 chr1 7701926 7702115 -234962238 + MIR SINE MIR 12 253 -9 756 323 33 25 chr1 7702148 7702541 -234961812 + L1MC4a LINE L1 5548 5943 -1865 2125 111 10 7 chr1 7702702 7702999 -234961354 + AluSx SINE Alu 1 298 -14 2482 74 0 0 chr1 7703089 7703400 -234960953 + AluY SINE Alu 1 311 0 276 189 63 21 chr1 7703524 7703619 -234960734 + L1ME4a LINE L1 5916 6014 -107 211 222 0 0 chr1 7703620 7703656 -234960697 + L2 LINE L2 3199 3234 -79 2088 127 3 16 chr1 7703953 7704261 -234960092 + AluSx SINE Alu 1 304 -8 1923 150 17 3 chr1 7704267 7704567 -234959786 + AluSq SINE Alu 1 304 -9 799 176 23 0 chr1 7704873 7705004 -234959349 + AluJb SINE Alu 2 135 -177 2168 108 0 0 chr1 7705004 7705292 -234959061 + AluSg SINE Alu 1 288 -22 2414 72 3 3 chr1 7705808 7706114 -234958239 - AluSp SINE Alu -7 306 1 2615 65 7 0 chr1 7706412 7706719 -234957634 - AluSc SINE Alu 0 309 1 1583 192 0 38 chr1 7706750 7707063 -234957290 + AluJo SINE Alu 1 301 -11 914 266 5 5 chr1 7707248 7707455 -234956898 - MIR SINE MIR -54 208 2 1744 183 3 0 chr1 7707762 7708057 -234956296 - AluSx SINE Alu -16 296 1 1789 138 6 55 chr1 7708171 7708497 -234955856 - AluJb SINE Alu -2 310 1 2430 70 3 7 chr1 7708994 7709295 -234955058 - AluY SINE Alu -11 300 1 239 281 123 9 chr1 7709407 7709521 -234954832 + MIR SINE MIR 74 200 -62 1513 169 4 0 chr1 7710018 7710260 -234954093 + AluJb SINE Alu 4 246 -66 1344 139 15 0 chr1 7710313 7710514 -234953839 - AluSg/x SINE Alu -15 297 94 289 81 0 0 chr1 7711077 7711114 -234953239 - Alu SINE Alu -261 41 5 1138 45 0 8 chr1 7711219 7711352 -234953001 + AluSg SINE Alu 3 134 -176 2166 104 10 3 chr1 7711352 7711650 -234952703 + AluSx SINE Alu 1 300 -12 372 257 0 0 chr1 7711650 7711720 -234952633 + L2 LINE L2 3197 3266 -47 1169 139 17 6 chr1 7711883 7712063 -234952290 + AluSx SINE Alu 1 182 -130 336 297 27 18 chr1 7712093 7712204 -234952149 + MIR SINE MIR 27 138 -70 1655 156 31 59 chr1 7712911 7713047 -234951306 + AluJo SINE Alu 1 139 -173 2162 116 0 7 chr1 7713047 7713341 -234951012 + AluSc SINE Alu 1 292 -17 1655 156 31 59 chr1 7713341 7713524 -234950829 + AluJo SINE Alu 139 311 -1 606 286 82 11 chr1 7713526 7713708 -234950645 + MIR SINE MIR 57 251 -11 2450 246 74 50 chr1 7713983 7714595 -234949758 + L2 LINE L2 1732 2328 -986 2170 122 0 0 chr1 7714595 7714891 -234949462 + AluSx SINE Alu 1 296 -16 2450 246 74 50 chr1 7714891 7715023 -234949330 + L2 LINE L2 2328 2455 -859 1776 180 0 3 chr1 7715023 7715312 -234949041 + AluJb SINE Alu 1 288 -24 2450 246 74 50 chr1 7715312 7715524 -234948829 + L2 LINE L2 2455 2712 -602 549 174 51 0 chr1 7715527 7715625 -234948728 + AluJo SINE Alu 34 136 -176 374 172 86 11 chr1 7715646 7715739 -234948614 + L2 LINE L2 2702 2801 -513 1033 159 30 25 chr1 7715871 7716072 -234948281 + MLT1C LTR MaLR 266 467 0 1127 272 72 59 chr1 7716072 7716528 -234947825 + L2 LINE L2 2848 3309 -4 2260 103 3 0 chr1 7717603 7717893 -234946460 - AluSq SINE Alu -22 291 1 240 279 54 23 chr1 7717960 7718089 -234946264 + L2 LINE L2 2538 2670 -644 884 280 94 21 chr1 7718928 7719339 -234945014 + L2 LINE L2 2664 3105 -208 2169 112 0 7 chr1 7719518 7719821 -234944532 + AluSx SINE Alu 1 301 -11 1559 118 0 0 chr1 7719870 7720081 -234944272 + AluJb SINE Alu 84 294 -18 24 53 0 0 chr1 7720261 7720299 -234944054 + AT_rich Low_complexity Low_complexity 1 38 0 2331 93 0 3 chr1 7720334 7720634 -234943719 - AluSg SINE Alu -11 299 1 268 334 100 55 chr1 7720699 7721028 -234943325 - L2 LINE L2 -13 3259 2916 938 126 0 15 chr1 7721134 7721269 -234943084 + AluJo SINE Alu 1 133 -169 38 0 0 0 chr1 7721269 7721307 -234943046 + AT_rich Low_complexity Low_complexity 1 38 0 1970 142 0 7 chr1 7722585 7722867 -234941486 - AluSq SINE Alu -33 280 1 293 326 68 30 chr1 7723342 7723474 -234940879 + L2 LINE L2 3133 3269 -3 968 169 34 11 chr1 7723921 7724099 -234940254 + AluJo SINE Alu 131 312 0 2497 87 0 0 chr1 7724856 7725167 -234939186 + AluSx SINE Alu 1 311 -1 1912 119 11 14 chr1 7725782 7726060 -234938293 + AluSx SINE Alu 19 295 -17 1864 56 158 11 chr1 7726097 7726363 -234937990 + AluY SINE Alu 1 305 -6 695 197 0 0 chr1 7726596 7726745 -234937608 + FLAM_C SINE Alu 1 149 0 253 220 17 34 chr1 7726747 7726806 -234937547 + AluJ/F(R)AM SINE Alu 137 194 -108 997 201 0 16 chr1 7726828 7727012 -234937341 - AluJb SINE Alu -46 266 86 2182 94 7 0 chr1 7727028 7727305 -234937048 - AluSg SINE Alu -31 279 1 660 188 8 8 chr1 7727311 7727428 -234936925 - FLAM_A SINE Alu -10 132 16 2490 84 3 0 chr1 7727682 7727990 -234936363 + AluSp SINE Alu 1 309 -4 461 130 130 11 chr1 7728555 7728647 -234935706 - HY1 scRNA scRNA -2 110 8 1102 197 60 77 chr1 7729073 7729372 -234934981 + AluSx SINE Alu 2 295 -7 926 154 0 0 chr1 7729958 7730094 -234934259 + AluJo SINE Alu 1 136 -176 2135 111 0 19 chr1 7730094 7730410 -234933943 + AluSx SINE Alu 1 310 -2 2423 93 0 0 chr1 7730671 7730973 -234933380 - AluSx SINE Alu -10 302 1 2230 109 10 0 chr1 7730973 7731275 -234933078 - AluSq SINE Alu -8 305 1 32 0 0 0 chr1 7731502 7731534 -234932819 + AT_rich Low_complexity Low_complexity 1 32 0 1000 140 0 67 chr1 7731535 7731639 -234932714 + FRAM SINE Alu 1 83 -229 1455 58 85 58 chr1 7731639 7731777 -234932576 - MER30 DNA MER1_type 0 230 82 2297 104 0 19 chr1 7731777 7732095 -234932258 - AluSx SINE Alu 0 312 1 1455 58 85 58 chr1 7732095 7732180 -234932173 - MER30 DNA MER1_type -148 82 1 1000 140 0 67 chr1 7732180 7732254 -234932099 + FRAM SINE Alu 83 160 -16 270 173 49 25 chr1 7732269 7732350 -234932003 + L1MB7 LINE L1 6100 6182 -2 293 213 0 0 chr1 7732452 7732513 -234931840 + L1MC/D LINE L1 5376 5436 -2372 780 145 123 7 chr1 7732518 7732656 -234931697 + FRAM SINE Alu 1 154 -12 2110 118 7 0 chr1 7732665 7732952 -234931401 + AluSx SINE Alu 1 289 -23 2004 148 0 3 chr1 7732958 7733249 -234931104 + AluJb SINE Alu 1 290 -22 2372 94 3 0 chr1 7733252 7733549 -234930804 - AluSp SINE Alu -15 298 1 415 299 159 9 chr1 7733588 7733909 -234930444 + L1MC/D LINE L1 5443 5811 -1997 27 0 0 0 chr1 7734056 7734083 -234930270 + AT_rich Low_complexity Low_complexity 1 27 0 210 324 29 7 chr1 7734437 7734576 -234929777 + L2 LINE L2 2918 3059 -213 29 28 0 0 chr1 7735030 7735066 -234929287 + AT_rich Low_complexity Low_complexity 1 36 0 2191 97 27 10 chr1 7735175 7735473 -234928880 + AluSc SINE Alu 1 303 -6 1588 163 80 7 chr1 7735566 7735842 -234928511 - AluJb SINE Alu -16 296 1 1483 278 84 8 chr1 7736432 7736907 -234927446 + MLT1J LTR MaLR 1 511 0 1156 115 35 11 chr1 7736977 7737151 -234927202 - AluSg/x SINE Alu 0 310 133 1907 162 0 14 chr1 7737211 7737347 -234927006 + AluSq SINE Alu 1 137 -176 2089 135 3 3 chr1 7737347 7737658 -234926695 + AluSq SINE Alu 1 311 -2 1907 162 0 14 chr1 7737658 7737817 -234926536 + AluSq SINE Alu 137 292 -21 2352 110 3 0 chr1 7737822 7738131 -234926222 - AluSq SINE Alu -3 310 1 1741 124 51 7 chr1 7738227 7738521 -234925832 + AluSx SINE Alu 1 306 0 190 267 188 30 chr1 7738601 7738702 -234925651 - L2 LINE L2 0 3313 3197 1846 162 0 7 chr1 7739035 7739332 -234925021 - AluJo SINE Alu -17 295 1 975 168 0 23 chr1 7739976 7740149 -234924204 + AluJb SINE Alu 137 305 -7 864 209 37 37 chr1 7740423 7740638 -234923715 - MIR SINE MIR 0 262 48 2498 85 0 3 chr1 7740834 7741139 -234923214 + AluY SINE Alu 1 304 -7 432 229 100 53 chr1 7741521 7741691 -234922662 + MER104 DNA MER2_type 1 178 -2 2047 105 22 0 chr1 7741957 7742284 -234922069 - AluSx SINE Alu 0 333 1 42 0 0 19 chr1 7742289 7742310 -234922043 + AT_rich Low_complexity Low_complexity 1 21 -31 1896 167 0 3 chr1 7742310 7742597 -234921756 + AluJb SINE Alu 3 288 -24 42 0 0 19 chr1 7742597 7742628 -234921725 + AT_rich Low_complexity Low_complexity 21 52 0 200 200 25 0 chr1 7742875 7742915 -234921438 + (CAGG)n Simple_repeat Simple_repeat 3 43 0 1818 158 17 20 chr1 7743307 7743599 -234920754 + AluJo SINE Alu 1 291 -21 2168 122 3 0 chr1 7744348 7744634 -234919719 + AluSx SINE Alu 2 288 -24 2226 114 3 3 chr1 7745589 7745897 -234918456 - AluSx SINE Alu -4 308 1 327 85 0 0 chr1 7747812 7747859 -234916494 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 92 0 0 chr1 7749212 7749277 -234915076 + GC_rich Low_complexity Low_complexity 1 65 0 273 57 0 0 chr1 7749796 7749831 -234914522 + (T)n Simple_repeat Simple_repeat 1 35 0 30 45 0 0 chr1 7750017 7750061 -234914292 + GC_rich Low_complexity Low_complexity 1 44 0 2536 60 3 0 chr1 7750875 7751173 -234913180 - AluSp SINE Alu -14 299 1 1740 119 0 0 chr1 7751528 7751763 -234912590 - AluSg/x SINE Alu 0 312 78 259 256 106 81 chr1 7752138 7752231 -234912122 - MIR SINE MIR -13 249 149 2454 76 10 0 chr1 7752231 7752534 -234911819 - AluSp SINE Alu -7 306 1 259 256 106 81 chr1 7752534 7752600 -234911753 - MIR SINE MIR -113 149 86 24 32 0 0 chr1 7752962 7752993 -234911360 + AT_rich Low_complexity Low_complexity 1 31 0 1403 166 4 17 chr1 7752994 7753229 -234911124 + AluJb SINE Alu 67 298 -14 23 33 0 0 chr1 7753584 7753614 -234910739 + AT_rich Low_complexity Low_complexity 1 30 0 2294 99 3 0 chr1 7754259 7754553 -234909800 + AluSq SINE Alu 1 295 -18 261 57 0 0 chr1 7755372 7755407 -234908946 + (A)n Simple_repeat Simple_repeat 1 35 0 2298 93 3 3 chr1 7755589 7755890 -234908463 + AluSx SINE Alu 1 301 -11 750 138 32 0 chr1 7755939 7756062 -234908291 + L1MC2 LINE L1 5727 5853 -480 774 154 0 0 chr1 7756063 7756186 -234908167 + AluJb SINE Alu 2 124 -188 25 0 0 0 chr1 7756197 7756222 -234908131 + AT_rich Low_complexity Low_complexity 1 25 0 1382 144 20 89 chr1 7756222 7756514 -234907839 + L1MC2 LINE L1 5839 6110 -234 1050 110 6 37 chr1 7756515 7756678 -234907675 + FRAM SINE Alu 1 158 -18 2075 118 17 3 chr1 7756678 7756965 -234907388 + AluSx SINE Alu 1 291 -21 2479 68 0 7 chr1 7756967 7757277 -234907076 + AluSg1 SINE Alu 1 308 -1 952 177 48 0 chr1 7757277 7757463 -234906890 + L1MC2 LINE L1 6137 6331 -13 2117 78 7 68 chr1 7757463 7757770 -234906583 + AluSq SINE Alu 1 288 -25 1173 164 53 70 chr1 7758406 7758541 -234905812 - MER44D DNA MER2_type -1886 605 469 2325 101 0 19 chr1 7758541 7758857 -234905496 + AluSg SINE Alu 1 310 0 1173 164 53 70 chr1 7758857 7758900 -234905453 - MER44D DNA MER2_type -2022 469 427 1897 159 0 3 chr1 7758900 7759190 -234905163 + AluJb SINE Alu 5 293 -19 1173 164 53 70 chr1 7759190 7759216 -234905137 - MER44D DNA MER2_type -2064 427 402 1721 141 26 49 chr1 7759216 7759359 -234904994 + AluJo SINE Alu 1 146 -166 1917 126 3 18 chr1 7759359 7759664 -234904689 + AluSx SINE Alu 1 301 0 1721 141 26 49 chr1 7759664 7759824 -234904529 + AluJo SINE Alu 146 298 -14 1173 164 53 70 chr1 7759824 7759958 -234904395 - MER44D DNA MER2_type -2089 402 1 1936 144 10 0 chr1 7760015 7760307 -234904046 + AluSx SINE Alu 16 310 -2 1119 162 6 6 chr1 7760307 7760486 -234903867 + AluJb SINE Alu 134 312 0 2185 100 7 20 chr1 7760655 7760956 -234903397 + AluSx SINE Alu 1 297 -15 2346 66 0 3 chr1 7761065 7761352 -234903001 + AluY SINE Alu 18 303 -8 2077 275 43 41 chr1 7761499 7762183 -234902170 + L2 LINE L2 989 1677 -1637 2353 111 0 0 chr1 7762183 7762490 -234901863 + AluSq SINE Alu 1 307 -6 2077 275 43 41 chr1 7762490 7762706 -234901647 + L2 LINE L2 1677 1891 -1423 2019 100 28 21 chr1 7762716 7763007 -234901346 + AluSx SINE Alu 10 302 -10 873 144 16 124 chr1 7763420 7763571 -234900782 + L1MCa LINE L1 352 479 -5947 2234 111 3 0 chr1 7763571 7763868 -234900485 - AluSp SINE Alu -15 298 1 873 144 16 124 chr1 7763868 7763910 -234900443 + L1MCa LINE L1 479 524 -5902 666 158 61 0 chr1 7763910 7764024 -234900329 + MER7A DNA MER2_type 1 119 -227 850 184 6 28 chr1 7764026 7764205 -234900148 + AluJb SINE Alu 137 311 -1 1355 202 43 11 chr1 7764248 7764525 -234899828 + AluJb SINE Alu 17 302 -10 245 214 18 0 chr1 7764525 7764581 -234899772 + L1MCa LINE L1 1779 1835 -4591 2321 113 3 0 chr1 7764583 7764892 -234899461 - AluSx SINE Alu -2 310 1 198 0 0 0 chr1 7764898 7764920 -234899433 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1515 197 0 35 chr1 7764921 7765238 -234899115 + AluJb SINE Alu 3 309 0 1972 148 3 3 chr1 7765239 7765543 -234898810 + AluSx SINE Alu 2 305 -7 517 135 10 0 chr1 7765549 7765653 -234898700 + L1MCa LINE L1 1821 1925 -4501 2366 80 0 20 chr1 7765775 7766076 -234898277 + AluY SINE Alu 1 295 -16 1795 127 4 0 chr1 7766328 7766573 -234897780 - AluSx SINE Alu -66 246 1 2024 93 11 7 chr1 7766622 7766901 -234897452 - AluSg SINE Alu -30 280 1 938 179 28 6 chr1 7766904 7767083 -234897270 - AluJb SINE Alu -18 294 112 1632 149 7 53 chr1 7767090 7767224 -234897129 + AluJo SINE Alu 1 117 -195 2315 97 7 0 chr1 7767224 7767522 -234896831 + AluSq SINE Alu 1 300 -13 1632 149 7 53 chr1 7767522 7767668 -234896685 + AluJo SINE Alu 117 268 -44 2235 115 0 13 chr1 7767691 7768003 -234896350 - AluSq SINE Alu -5 308 1 2336 107 7 0 chr1 7768844 7769154 -234895199 + AluSx SINE Alu 1 312 0 229 211 39 0 chr1 7770834 7770886 -234893467 + AluJo SINE Alu 82 135 -167 1628 163 0 80 chr1 7770887 7771025 -234893328 + AluJb SINE Alu 1 148 -164 1906 135 10 10 chr1 7771025 7771313 -234893040 + AluSx SINE Alu 1 288 -24 1179 174 13 129 chr1 7771183 7771500 -234892853 + AluJo SINE Alu 21 300 -12 1628 163 0 80 chr1 7771313 7771500 -234892853 + AluJb SINE Alu 148 300 -12 1790 120 71 0 chr1 7771505 7771772 -234892581 + AluSx SINE Alu 21 306 -6 1667 309 49 48 chr1 7771818 7772040 -234892313 + L2 LINE L2 2086 2306 -1008 2479 98 17 3 chr1 7772040 7772399 -234891954 + THE1B LTR MaLR 1 364 0 1667 309 49 48 chr1 7772399 7772765 -234891588 + L2 LINE L2 2306 2678 -636 2255 102 7 3 chr1 7772765 7773059 -234891294 + AluSx SINE Alu 6 300 -12 1667 309 49 48 chr1 7773059 7773345 -234891008 + L2 LINE L2 2678 2962 -352 612 218 35 0 chr1 7773411 7773553 -234890800 + MLT1A1 LTR MaLR 1 147 -218 826 112 7 63 chr1 7773553 7773684 -234890669 + FRAM SINE Alu 1 30 -146 1093 101 35 0 chr1 7773684 7773853 -234890500 + L1PA8 LINE L1 5995 6169 -3 826 112 7 63 chr1 7773853 7773864 -234890489 + FRAM SINE Alu 30 40 0 1009 169 43 0 chr1 7773892 7774076 -234890277 + MLT1A1 LTR MaLR 170 361 -4 1698 74 0 0 chr1 7774079 7774282 -234890071 - AluY SINE Alu -10 301 99 661 67 11 0 chr1 7774335 7774425 -234889928 - AluY SINE Alu -219 92 2 2268 106 0 17 chr1 7774431 7774595 -234889758 - AluSx SINE Alu -16 296 138 2186 108 7 16 chr1 7774595 7774902 -234889451 - AluSg SINE Alu -6 304 1 2268 106 0 17 chr1 7774902 7775038 -234889315 - AluSx SINE Alu -174 138 1 1095 221 57 57 chr1 7775049 7775371 -234888982 + MLT1C LTR MaLR 77 401 -66 2219 122 0 3 chr1 7775371 7775682 -234888671 - AluSx SINE Alu -2 310 1 1095 221 57 57 chr1 7775682 7775748 -234888605 + MLT1C LTR MaLR 400 465 -2 967 132 11 6 chr1 7776023 7776197 -234888156 + CT-rich Low_complexity Low_complexity 1 175 0 2011 129 31 3 chr1 7776203 7776489 -234887864 - AluSx SINE Alu -18 294 1 278 190 17 0 chr1 7777318 7777376 -234886977 - MIR SINE MIR -137 125 67 1187 246 91 9 chr1 7777395 7777792 -234886561 + MLT1K LTR MaLR 2 479 -109 2055 119 39 0 chr1 7778731 7778894 -234885459 - AluSx SINE Alu -16 296 141 2165 120 3 10 chr1 7778894 7779193 -234885160 - AluSq SINE Alu -16 297 1 180 0 0 0 chr1 7779199 7779219 -234885134 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2055 119 39 0 chr1 7779219 7779333 -234885020 - AluSx SINE Alu -175 137 1 195 42 0 0 chr1 7779685 7779709 -234884644 + (GCTG)n Simple_repeat Simple_repeat 2 25 0 2387 110 0 0 chr1 7780458 7780768 -234883585 + AluSx SINE Alu 1 310 -2 261 0 0 0 chr1 7781235 7781264 -234883089 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2208 110 0 35 chr1 7781718 7782035 -234882318 - AluSx SINE Alu -6 306 1 1351 186 121 53 chr1 7782090 7782375 -234881978 + L1M4 LINE L1 4873 5198 -948 1962 155 3 19 chr1 7782375 7782692 -234881661 + AluJo SINE Alu 1 312 0 1351 186 121 53 chr1 7782692 7782836 -234881517 + L1M4 LINE L1 5198 5331 -815 2339 105 0 3 chr1 7782836 7783140 -234881213 + AluSx SINE Alu 1 303 -9 1356 118 80 55 chr1 7783145 7783382 -234880971 + AluJo SINE Alu 55 297 -15 1959 173 20 32 chr1 7783384 7783420 -234880933 + L1M4 LINE L1 5333 5368 -816 1770 163 51 10 chr1 7783420 7783714 -234880639 + AluJb SINE Alu 1 306 -6 1959 173 20 32 chr1 7783714 7783833 -234880520 + L1M4 LINE L1 5368 5487 -697 2447 89 0 0 chr1 7783833 7784136 -234880217 + AluSx SINE Alu 1 303 -9 1959 173 20 32 chr1 7784136 7784418 -234879935 + L1M4 LINE L1 5487 5766 -418 920 140 15 0 chr1 7784425 7784561 -234879792 + FRAM SINE Alu 18 155 -21 387 0 0 0 chr1 7784581 7784624 -234879729 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 941 158 35 12 chr1 7784646 7784817 -234879536 - FRAM SINE Alu -1 175 1 441 268 116 0 chr1 7784939 7785103 -234879250 - L2 LINE L2 -26 3287 3105 2193 55 45 58 chr1 7785352 7785660 -234878693 + AluY SINE Alu 1 304 -7 1067 201 27 5 chr1 7785660 7785884 -234878469 + L1M3 LINE L1 5441 5669 -511 383 111 10 4 chr1 7785884 7786092 -234878261 + AluJo SINE Alu 1 298 -4 280 206 118 81 chr1 7786860 7786926 -234877427 - Charlie8 DNA MER1_type -2219 198 136 1399 175 68 51 chr1 7786926 7787069 -234877284 + AluJo SINE Alu 1 140 -172 2211 98 0 7 chr1 7787069 7787381 -234876972 + AluSg SINE Alu 1 310 0 1399 175 68 51 chr1 7787381 7787528 -234876825 + AluJo SINE Alu 140 297 -15 280 206 118 81 chr1 7787528 7787597 -234876756 - Charlie8 DNA MER1_type -2281 136 58 323 275 158 35 chr1 7787609 7787722 -234876631 + L1ME1 LINE L1 5970 6112 -54 2156 118 5 68 chr1 7787722 7787898 -234876455 + THE1C LTR MaLR 1 186 -189 2375 93 0 10 chr1 7787898 7788211 -234876142 - AluSx SINE Alu -1 311 2 2156 118 5 68 chr1 7788211 7788434 -234875919 + THE1C LTR MaLR 186 375 0 323 275 158 35 chr1 7788434 7788491 -234875862 + L1ME1 LINE L1 6112 6161 -5 2070 124 0 0 chr1 7788574 7788847 -234875506 - AluSx SINE Alu -19 293 21 205 279 13 63 chr1 7789009 7789088 -234875265 - MIR SINE MIR -108 154 80 723 188 85 6 chr1 7789428 7789593 -234874760 - MER5B DNA MER1_type 0 178 1 722 160 128 19 chr1 7789613 7789769 -234874584 - AluJo SINE Alu -20 292 120 2135 131 0 0 chr1 7789775 7790065 -234874288 + AluSx SINE Alu 1 290 -22 606 221 14 0 chr1 7790647 7790787 -234873566 + ERVL-C1 LTR ERVL 5615 5756 -8 516 208 95 135 chr1 7790789 7790955 -234873398 + MLT2C1 LTR ERVL 3 151 -246 2045 133 14 7 chr1 7790955 7791249 -234873104 - AluSx SINE Alu -16 296 1 516 208 95 135 chr1 7791249 7791409 -234872944 + MLT2C1 LTR ERVL 151 316 -81 853 206 13 0 chr1 7791424 7791579 -234872774 - AluJb SINE Alu -26 286 130 2061 128 7 14 chr1 7791764 7791934 -234872419 - AluSx SINE Alu -7 305 136 2397 95 0 0 chr1 7791934 7792230 -234872123 - AluSg SINE Alu -14 296 1 2061 128 7 14 chr1 7792230 7792355 -234871998 - AluSx SINE Alu -176 136 12 189 0 0 0 chr1 7793934 7793955 -234870398 + (A)n Simple_repeat Simple_repeat 1 21 0 1626 114 63 20 chr1 7793963 7794218 -234870135 + AluSx SINE Alu 35 300 -12 600 135 0 0 chr1 7794239 7794335 -234870018 + FRAM SINE Alu 73 168 -8 619 116 0 0 chr1 7795689 7795775 -234868578 - FLAM_C SINE Alu -37 106 21 1452 194 11 29 chr1 7796381 7796659 -234867694 - AluJo SINE Alu -39 273 1 463 271 97 7 chr1 7796808 7796952 -234867401 + MIR SINE MIR 7 163 -99 844 80 36 0 chr1 7798046 7798158 -234866195 + AluSg/x SINE Alu 193 308 -2 677 164 0 62 chr1 7798730 7798858 -234865495 - FLAM_A SINE Alu -12 121 2 354 235 44 88 chr1 7798923 7799059 -234865294 - MIR SINE MIR -71 191 62 1979 94 94 4 chr1 7799606 7799883 -234864470 - AluY SINE Alu -9 302 1 332 256 231 20 chr1 7800526 7800725 -234863628 - MARNA DNA Mariner -184 402 162 1603 167 42 48 chr1 7800730 7801041 -234863312 - AluJb SINE Alu -3 309 1 2271 123 0 0 chr1 7801612 7801913 -234862440 - AluSx SINE Alu -11 301 1 185 138 0 0 chr1 7804291 7804320 -234860033 - MER5A DNA MER1_type -33 156 128 230 254 0 0 chr1 7804381 7804440 -234859913 - Charlie5 DNA MER1_type -27 2585 2527 2187 119 3 0 chr1 7804441 7804734 -234859619 - AluSx SINE Alu -16 296 3 657 186 120 42 chr1 7805218 7805385 -234858968 + L1MC1 LINE L1 6137 6316 -17 2312 109 0 16 chr1 7806347 7806660 -234857693 + AluSx SINE Alu 4 311 -1 749 96 88 0 chr1 7807195 7807320 -234857033 - MER85 DNA T2_type -3 136 1 189 171 0 0 chr1 7807351 7807386 -234856967 + A-rich Low_complexity Low_complexity 1 35 0 703 114 0 61 chr1 7807842 7807974 -234856379 - FLAM_C SINE Alu -9 124 1 273 177 89 25 chr1 7808487 7808566 -234855787 - L1ME1 LINE L1 -117 6049 5966 1000 50 10 5 chr1 7808670 7808870 -234855483 + AluY SINE Alu 2 302 -9 1967 87 66 35 chr1 7808898 7809046 -234855307 - AluSq SINE Alu -13 300 158 1876 85 143 0 chr1 7809046 7809305 -234855048 - AluY SINE Alu -15 296 1 1967 87 66 35 chr1 7809305 7809445 -234854908 - AluSq SINE Alu -155 158 3 2156 60 19 82 chr1 7809819 7810137 -234854216 + AluSp SINE Alu 1 298 -15 2471 81 0 3 chr1 7813347 7813657 -234850696 + AluSg SINE Alu 2 310 0 1362 182 34 51 chr1 7813679 7813975 -234850378 + AluJo SINE Alu 3 293 -19 2142 108 29 32 chr1 7813978 7814292 -234850061 + AluSq SINE Alu 1 313 0 2322 110 3 0 chr1 7814302 7814603 -234849750 + AluSx SINE Alu 1 302 -10 2457 92 3 0 chr1 7814696 7815002 -234849351 - AluY SINE Alu -4 307 1 2196 112 0 16 chr1 7815025 7815328 -234849025 - AluSg SINE Alu -12 298 1 201 39 0 0 chr1 7815328 7815354 -234848999 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2008 128 0 3 chr1 7815354 7815636 -234848717 - AluSg SINE Alu -29 281 1 33 0 0 0 chr1 7815637 7815670 -234848683 + AT_rich Low_complexity Low_complexity 1 33 0 546 144 0 52 chr1 7815670 7815767 -234848586 - U6 snRNA snRNA -2 105 14 2374 90 3 0 chr1 7816220 7816520 -234847833 - AluSp SINE Alu -12 301 1 2238 117 3 7 chr1 7816777 7817084 -234847269 + AluSx SINE Alu 1 306 -6 2183 104 10 0 chr1 7817645 7817933 -234846420 + AluSq SINE Alu 1 291 -22 274 319 59 89 chr1 7818066 7818235 -234846118 + L3 LINE CR1 402 565 -1012 2083 133 10 10 chr1 7818272 7818574 -234845779 + AluSx SINE Alu 1 302 -10 1087 220 81 23 chr1 7818574 7818833 -234845520 + MLT1A1 LTR MaLR 76 349 -16 366 205 141 0 chr1 7818960 7819038 -234845315 + MER58A DNA MER1_type 1 89 -18 1240 148 9 32 chr1 7819038 7819254 -234845099 - AluJb SINE Alu -15 297 87 639 246 0 0 chr1 7819254 7819388 -234844965 + MER58A DNA MER1_type 87 220 -4 2239 130 0 0 chr1 7819645 7819953 -234844400 - AluSg SINE Alu -2 308 1 1768 172 14 7 chr1 7819953 7820244 -234844109 - AluJo SINE Alu -19 293 1 346 233 25 50 chr1 7820248 7820368 -234843985 - L2 LINE L2 -685 2629 2513 1758 183 3 3 chr1 7820372 7820667 -234843686 + AluJo SINE Alu 1 295 -17 2454 68 14 0 chr1 7820670 7820963 -234843390 + AluSq SINE Alu 1 297 -16 2593 62 7 0 chr1 7820965 7821273 -234843080 + AluY SINE Alu 1 310 -1 1696 191 10 16 chr1 7821311 7821615 -234842738 + AluJb SINE Alu 5 306 -6 354 294 34 14 chr1 7821747 7821893 -234842460 + L3 LINE CR1 1230 1378 -199 215 61 30 0 chr1 7822029 7822062 -234842291 + (CA)n Simple_repeat Simple_repeat 2 35 0 212 143 24 0 chr1 7822062 7822104 -234842249 + (TA)n Simple_repeat Simple_repeat 2 44 0 246 49 0 0 chr1 7822534 7822575 -234841778 - Alu SINE Alu 0 308 268 180 0 0 0 chr1 7822575 7822595 -234841758 + (A)n Simple_repeat Simple_repeat 1 20 0 1513 88 5 0 chr1 7822605 7822809 -234841544 + MER51B LTR ERV1 48 252 -125 2388 92 0 7 chr1 7822814 7823119 -234841234 - AluY SINE Alu -8 303 1 1011 187 0 21 chr1 7823120 7823307 -234841046 + AluJb SINE Alu 115 297 -15 2501 60 7 3 chr1 7823317 7823615 -234840738 - AluSp SINE Alu -14 299 1 827 213 34 78 chr1 7823649 7823917 -234840436 - LTR8 LTR ERV1 -435 256 1 226 227 196 0 chr1 7824017 7824114 -234840239 + MER34 LTR ERV1 370 485 -57 581 251 70 32 chr1 7824272 7824459 -234839894 - L2 LINE L2 0 3313 3120 3549 102 33 38 chr1 7824462 7824988 -234839365 + LTR8 LTR ERV1 1 525 -166 2204 88 29 39 chr1 7824988 7825103 -234839250 + AluSg SINE Alu 1 116 -194 2534 43 33 0 chr1 7825103 7825404 -234838949 + AluY SINE Alu 1 311 0 2204 88 29 39 chr1 7825404 7825596 -234838757 + AluSg SINE Alu 116 305 -5 3549 102 33 38 chr1 7825596 7825650 -234838703 + LTR8 LTR ERV1 525 578 -113 311 143 0 0 chr1 7826852 7826908 -234837445 + LTR8 LTR ERV1 563 618 -73 206 170 0 21 chr1 7826912 7826959 -234837394 + T-rich Low_complexity Low_complexity 3 48 0 2085 143 7 0 chr1 7826962 7827262 -234837091 - AluSx SINE Alu -10 302 1 598 135 0 0 chr1 7827262 7827351 -234837002 + LTR8 LTR ERV1 603 691 0 21 36 0 0 chr1 7827531 7827559 -234836794 + AT_rich Low_complexity Low_complexity 1 28 0 976 87 0 8 chr1 7827581 7827708 -234836645 + AluSp/q SINE Alu 170 295 -18 2058 117 37 7 chr1 7827735 7828034 -234836319 + AluSc SINE Alu 1 308 -1 17779 75 5 7 chr1 7828118 7830549 -234833804 + HERV9 LTR ERV1 5972 8399 0 6166 66 45 21 chr1 7830549 7831356 -234832997 + LTR12 LTR ERV1 1 826 0 1486 129 160 4 chr1 7831359 7831615 -234832738 - AluJo SINE Alu -16 296 1 2145 136 3 0 chr1 7831646 7831954 -234832399 - AluSq SINE Alu -4 309 1 2081 119 0 20 chr1 7831957 7832260 -234832093 - AluSx SINE Alu -15 297 1 501 125 25 0 chr1 7832326 7832406 -234831947 - MER41B LTR ERV1 -221 414 333 1812 146 36 4 chr1 7832408 7832683 -234831670 + AluSx SINE Alu 1 284 -28 183 42 0 0 chr1 7832683 7832707 -234831646 + (CTAAA)n Simple_repeat Simple_repeat 2 25 0 1278 154 0 43 chr1 7832719 7832890 -234831463 - MER41B LTR ERV1 -282 353 193 2260 105 7 0 chr1 7832890 7833184 -234831169 - AluSg SINE Alu -14 296 1 1278 154 0 43 chr1 7833184 7833246 -234831107 - MER41B LTR ERV1 -442 193 130 2121 129 0 41 chr1 7833273 7833445 -234830908 - AluSx SINE Alu -8 304 126 576 0 0 0 chr1 7833445 7833509 -234830844 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 2053 145 3 0 chr1 7833509 7833792 -234830561 - AluSq SINE Alu -29 284 1 2121 129 0 41 chr1 7833792 7833935 -234830418 - AluSx SINE Alu -184 128 1 1348 148 145 17 chr1 7833955 7834245 -234830108 + LTR47A LTR ERVL 124 450 -2 2301 105 0 0 chr1 7834261 7834557 -234829796 - AluSx SINE Alu -16 296 1 876 184 180 39 chr1 7834693 7834949 -234829404 + MER21A LTR ERV1 1 292 -639 * 1224 107 32 0 chr1 7834929 7835116 -234829237 - MER30 DNA MER1_type -37 193 1 * 3133 159 87 29 chr1 7835116 7835482 -234828871 + MER21A LTR ERV1 245 588 -343 2242 93 0 0 chr1 7835482 7835762 -234828591 + AluSx SINE Alu 1 280 -32 224 77 26 0 chr1 7835764 7835803 -234828550 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3133 159 87 29 chr1 7835803 7836074 -234828279 + MER21A LTR ERV1 588 922 -9 294 95 0 0 chr1 7836626 7836668 -234827685 + (TCTCC)n Simple_repeat Simple_repeat 4 45 0 1632 161 0 16 chr1 7836668 7836917 -234827436 - AluJb SINE Alu -33 279 35 351 273 104 44 chr1 7837050 7837233 -234827120 + L1MEd LINE L1 619 812 -5307 222 62 0 0 chr1 7837233 7837265 -234827088 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1945 108 71 0 chr1 7837265 7837533 -234826820 - AluSx SINE Alu -25 287 1 183 129 0 0 chr1 7837578 7837609 -234826744 + (TC)n Simple_repeat Simple_repeat 2 32 0 2296 121 0 3 chr1 7837611 7837924 -234826429 - AluSx SINE Alu 0 312 1 314 339 99 0 chr1 7838287 7838479 -234825874 + L1MEd LINE L1 617 827 -5292 2363 122 0 0 chr1 7838513 7838825 -234825528 - AluSx SINE Alu 0 312 1 2673 40 0 3 chr1 7838829 7839133 -234825220 - AluYa5 SINE Alu -7 304 2 2810 22 0 10 chr1 7839136 7839450 -234824903 - AluYa5 SINE Alu 0 311 1 924 145 0 0 chr1 7839453 7839584 -234824769 - AluJo/FLAM SINE Alu -181 131 1 1254 86 0 32 chr1 7840050 7840236 -234824117 - HERVK9 LTR ERVK -4111 1805 1626 * 4176 89 63 17 chr1 7840232 7840870 -234823483 - HERVK9 LTR ERVK -5249 667 1 1353 148 76 8 chr1 7840870 7841120 -234823233 - MER9 LTR ERVK 0 511 245 519 202 0 0 chr1 7841143 7841227 -234823126 - AluJ/FLAM SINE Alu -224 88 5 306 325 57 57 chr1 7841248 7841472 -234822881 + LTR16A LTR ERVL 145 368 -82 835 143 8 0 chr1 7841472 7841598 -234822755 - L1PB2 LINE L1 -3 6148 6022 306 325 57 57 chr1 7841598 7841611 -234822742 + LTR16A LTR ERVL 368 380 -70 2375 71 0 0 chr1 7841611 7841920 -234822433 - AluSc SINE Alu 0 309 1 306 325 57 57 chr1 7841920 7841978 -234822375 + LTR16A LTR ERVL 379 442 -8 388 303 0 0 chr1 7842165 7842274 -234822079 - L2 LINE L2 -481 2833 2725 1078 117 0 25 chr1 7842289 7842452 -234821901 - AluSg/x SINE Alu -17 293 135 628 260 235 6 chr1 7842525 7842887 -234821466 - L2 LINE L2 -703 2611 2167 1500 157 8 16 chr1 7843037 7843285 -234821068 + AluJb SINE Alu 53 298 -14 232 167 0 42 chr1 7843534 7843582 -234820771 + T-rich Low_complexity Low_complexity 2 47 0 191 61 30 0 chr1 7844146 7844179 -234820174 + (CAA)n Simple_repeat Simple_repeat 1 34 0 5859 23 0 0 chr1 7844413 7845029 -234819324 + SVA Other Other 770 1385 -1 380 92 184 0 chr1 7845030 7845106 -234819247 + MER41B LTR ERV1 464 553 -82 186 43 0 0 chr1 7845107 7845130 -234819223 + (A)n Simple_repeat Simple_repeat 1 23 0 2034 122 0 69 chr1 7845249 7845584 -234818769 - AluSx SINE Alu 0 312 1 213 146 0 0 chr1 7845610 7845658 -234818695 + (TG)n Simple_repeat Simple_repeat 1 48 0 686 132 15 73 chr1 7845658 7845794 -234818559 - FRAM SINE Alu -9 167 40 2543 75 0 0 chr1 7846333 7846641 -234817712 - AluSx SINE Alu -4 308 1 1925 139 20 3 chr1 7847116 7847411 -234816942 + AluSx SINE Alu 1 300 -12 2770 167 12 37 chr1 7848096 7848666 -234815687 + L1MB5 LINE L1 5584 6139 -35 2308 89 10 7 chr1 7848673 7848966 -234815387 + AluSq SINE Alu 6 299 -14 2122 118 7 3 chr1 7848979 7849284 -234815069 + AluJb SINE Alu 7 312 0 2281 104 3 0 chr1 7849289 7849588 -234814765 + AluSg SINE Alu 3 302 -8 883 137 0 0 chr1 7849588 7849712 -234814641 + FLAM_C SINE Alu 12 135 -8 1104 89 0 0 chr1 7850033 7850168 -234814185 + AluSq/x SINE Alu 1 135 -177 2323 112 0 13 chr1 7850168 7850482 -234813871 + AluSx SINE Alu 1 310 -2 1013 208 19 102 chr1 7850785 7851107 -234813246 + AluJo SINE Alu 1 295 -7 2328 95 16 0 chr1 7851197 7851501 -234812852 + AluSq SINE Alu 1 309 -4 2193 105 0 0 chr1 7851832 7852109 -234812244 - AluSx SINE Alu -34 278 2 2183 137 0 0 chr1 7852113 7852413 -234811940 - AluSx SINE Alu -8 304 5 812 168 0 0 chr1 7852570 7852695 -234811658 - FLAM_A SINE Alu -8 125 1 2116 138 0 3 chr1 7852749 7853045 -234811308 + AluSx SINE Alu 1 295 -17 585 118 12 0 chr1 7853048 7853133 -234811220 + AluSx SINE Alu 2 87 -225 467 272 54 16 chr1 7853292 7853476 -234810877 + LTR21A LTR ERV1 300 490 -15 2531 179 43 14 chr1 7853477 7854034 -234810319 + HERVFH21 LTR ERV1 6 578 -5951 * 17789 188 20 23 chr1 7854025 7856309 -234808044 + HERVFH21 LTR ERV1 536 2831 -3698 1931 134 4 0 chr1 7856309 7856578 -234807775 - AluSg SINE Alu -40 270 1 17789 188 20 23 chr1 7856578 7858219 -234806134 + HERVFH21 LTR ERV1 2831 4476 -2053 2443 266 28 21 chr1 7858737 7859561 -234804792 + HERVFH21 LTR ERV1 5700 6529 0 484 261 56 17 chr1 7859729 7859909 -234804444 + LTR21A LTR ERV1 300 486 -19 1376 142 110 0 chr1 7859909 7860128 -234804225 + AluSx SINE Alu 70 312 0 2715 42 0 6 chr1 7860179 7860491 -234803862 - AluY SINE Alu -1 310 1 947 143 0 0 chr1 7860585 7860718 -234803635 + FLAM_A SINE Alu 1 133 0 185 309 0 0 chr1 7860759 7860814 -234803539 + L2 LINE L2 2486 2540 -774 622 282 81 69 chr1 7860861 7860934 -234803419 - MLT1L LTR MaLR 0 615 544 2390 105 0 0 chr1 7860934 7861240 -234803113 + AluSg1 SINE Alu 1 306 -3 622 282 81 69 chr1 7861240 7861485 -234802868 - MLT1L LTR MaLR -71 544 288 1979 140 0 45 chr1 7861485 7861654 -234802699 - AluJo SINE Alu -10 302 152 2002 131 46 0 chr1 7861654 7861937 -234802416 - AluSx SINE Alu -15 297 2 1979 140 0 45 chr1 7861937 7862081 -234802272 - AluJo SINE Alu -160 152 3 622 282 81 69 chr1 7862081 7862169 -234802184 - MLT1L LTR MaLR -327 288 203 247 295 0 0 chr1 7862136 7862197 -234802156 - MLT1J LTR MaLR -340 171 111 * 200 111 0 28 chr1 7862333 7862369 -234801984 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 336 302 31 0 chr1 7862369 7862498 -234801855 - L1M4 LINE L1 -2400 3746 3614 599 234 8 0 chr1 7862502 7862626 -234801727 - MER58B DNA MER1_type -6 335 211 523 340 87 4 chr1 7862672 7862913 -234801440 - L1M4 LINE L1 -2539 3607 3347 606 125 40 125 chr1 7862918 7862969 -234801384 - L1MB2 LINE L1 0 6171 6117 2290 104 0 0 chr1 7862969 7863268 -234801085 - AluSq SINE Alu -14 299 1 606 125 40 125 chr1 7863268 7863368 -234800985 - L1MB2 LINE L1 -54 6117 6033 2165 133 0 3 chr1 7863380 7863680 -234800673 - AluSx SINE Alu -13 299 1 1664 177 0 16 chr1 7863680 7863997 -234800356 - L1MB4 LINE L1 -43 6137 5826 2269 109 0 28 chr1 7864067 7864388 -234799965 - AluSx SINE Alu 0 312 1 389 20 20 0 chr1 7864389 7864439 -234799914 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 1898 130 0 60 chr1 7864439 7864739 -234799614 - AluSx SINE Alu -30 282 1 585 143 0 31 chr1 7864744 7864842 -234799511 - AluJo SINE Alu -176 136 42 252 147 0 0 chr1 7864912 7864955 -234799398 + Alu SINE Alu 1 36 -263 2122 224 69 39 chr1 7865058 7865310 -234799043 - L1ME3A LINE L1 -202 5968 5725 1910 157 21 0 chr1 7865310 7865597 -234798756 - AluJb SINE Alu -19 293 1 2122 224 69 39 chr1 7865597 7865811 -234798542 - L1ME3A LINE L1 -445 5725 5519 2494 104 11 16 chr1 7865811 7866177 -234798176 - THE1B LTR MaLR 0 364 1 2122 224 69 39 chr1 7866177 7866500 -234797853 - L1ME3A LINE L1 -651 5519 5157 662 160 48 40 chr1 7866501 7866626 -234797727 - FLAM_C SINE Alu -3 130 5 2491 86 0 0 chr1 7866673 7866976 -234797377 - AluY SINE Alu -8 303 1 2153 144 0 0 chr1 7867011 7867310 -234797043 - AluSx SINE Alu -13 299 1 2170 96 34 7 chr1 7867322 7867615 -234796738 - AluY SINE Alu -10 301 1 231 36 0 0 chr1 7867626 7867654 -234796699 + (A)n Simple_repeat Simple_repeat 1 28 0 1716 181 3 14 chr1 7867737 7868025 -234796328 + AluJb SINE Alu 1 285 -27 305 181 29 0 chr1 7868097 7868173 -234796180 - L1MC3 LINE L1 0 7785 7716 226 164 66 0 chr1 7868206 7868267 -234796086 - L1ME3A LINE L1 -1779 4367 4303 1826 175 21 0 chr1 7868336 7868622 -234795731 + AluJb SINE Alu 2 293 -19 2181 102 0 3 chr1 7868628 7868938 -234795415 + AluSg SINE Alu 1 309 0 950 177 48 0 chr1 7868939 7869125 -234795228 + L1MC2 LINE L1 6137 6331 -13 2130 78 7 68 chr1 7869125 7869432 -234794921 + AluSq SINE Alu 1 288 -25 669 133 74 0 chr1 7870069 7870204 -234794149 - Tigger7 DNA MER2_type -4 2483 2339 2080 89 0 22 chr1 7870204 7870473 -234793880 + AluSg SINE Alu 1 263 -47 258 105 0 0 chr1 7870573 7870611 -234793742 + (A)n Simple_repeat Simple_repeat 1 38 0 1399 128 5 0 chr1 7870965 7871161 -234793192 - AluSx SINE Alu -115 197 1 255 49 0 24 chr1 7871515 7871556 -234792797 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2013 118 29 0 chr1 7871556 7871829 -234792524 - AluSx SINE Alu -4 308 1 394 227 31 0 chr1 7871831 7871928 -234792425 + HERVL40 LTR ERVL 3519 3618 -1912 274 98 0 0 chr1 7871952 7871993 -234792360 - Alu SINE Alu -6 296 256 1940 129 0 48 chr1 7871954 7872116 -234792237 - AluJb SINE Alu -18 294 126 243 0 0 0 chr1 7872116 7872143 -234792210 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2130 121 4 0 chr1 7872143 7872424 -234791929 - AluSg SINE Alu -28 282 1 1940 129 0 48 chr1 7872424 7872569 -234791784 - AluJb SINE Alu -184 128 1 909 141 83 26 chr1 7872863 7873055 -234791298 + MLT1D LTR MaLR 1 203 -302 738 179 46 35 chr1 7873479 7873523 -234790830 + MER61D LTR ERV1 314 356 -145 4083 98 19 20 chr1 7873523 7874118 -234790235 - LTR61 LTR ERV1 0 595 2 738 179 46 35 chr1 7874118 7874256 -234790097 + MER61D LTR ERV1 356 483 -18 1305 152 26 4 chr1 7874297 7874528 -234789825 + MLT1D LTR MaLR 270 505 0 2587 83 0 0 chr1 7875650 7875963 -234788390 + AluSq SINE Alu 1 313 0 1399 128 5 0 chr1 7876328 7876524 -234787829 - AluSx SINE Alu -115 197 1 2361 110 0 0 chr1 7876887 7877197 -234787156 - AluSx SINE Alu -2 310 1 857 118 28 107 chr1 7877619 7877797 -234786556 + AluJb SINE Alu 149 312 0 223 244 282 0 chr1 7878874 7878952 -234785401 + MIR3 SINE MIR 62 161 -47 186 304 144 24 chr1 7878959 7879062 -234785291 - MIR SINE MIR -23 239 117 1930 153 36 0 chr1 7879062 7879363 -234784990 + AluJb SINE Alu 1 312 0 186 304 144 24 chr1 7879363 7879384 -234784969 - MIR SINE MIR -145 117 100 347 189 175 34 chr1 7879409 7879535 -234784818 - MIR SINE MIR -78 130 1 2234 113 20 0 chr1 7880804 7881105 -234783248 - AluSx SINE Alu -5 307 1 2374 110 0 0 chr1 7881567 7881877 -234782476 - AluSx SINE Alu -2 310 1 2176 101 14 10 chr1 7882624 7882921 -234781432 - AluSp SINE Alu -15 298 1 2435 87 0 0 chr1 7883461 7883759 -234780594 + AluSx SINE Alu 1 298 -14 2348 93 0 13 chr1 7884755 7885057 -234779296 - AluSx SINE Alu -14 298 1 294 376 99 3 chr1 7885121 7885298 -234779055 - MIR3 SINE MIR -65 143 2 1920 145 14 3 chr1 7885360 7885657 -234778696 + AluJb SINE Alu 1 300 -12 2470 102 0 0 chr1 7885707 7886020 -234778333 + AluSq SINE Alu 1 313 0 23 0 0 0 chr1 7886574 7886597 -234777756 + AT_rich Low_complexity Low_complexity 1 23 0 2035 150 0 0 chr1 7886600 7886893 -234777460 - AluSx SINE Alu -19 293 1 2195 124 0 0 chr1 7886919 7887210 -234777143 - AluSx SINE Alu -21 291 1 2277 102 0 0 chr1 7887437 7887730 -234776623 - AluSx SINE Alu -19 293 1 2201 136 94 26 chr1 7887731 7888115 -234776238 - L1MC1 LINE L1 -236 6097 5741 1652 169 25 18 chr1 7888115 7888393 -234775960 + AluJb SINE Alu 1 280 -32 348 24 0 0 chr1 7888393 7888434 -234775919 + (CAAT)n Simple_repeat Simple_repeat 4 44 0 2201 136 94 26 chr1 7888434 7888504 -234775849 - L1MC1 LINE L1 -591 5742 5611 4009 104 3 28 chr1 7888504 7888947 -234775406 + MER41A LTR ERV1 1 428 -126 2034 131 24 0 chr1 7888947 7889238 -234775115 - AluSx SINE Alu -14 298 1 4009 104 3 28 chr1 7889238 7889362 -234774991 + MER41A LTR ERV1 428 554 0 475 253 20 0 chr1 7889362 7889508 -234774845 - L1M4 LINE L1 -1567 4579 4431 997 127 0 0 chr1 7889514 7889648 -234774705 - AluSq/x SINE Alu -178 134 1 23 0 0 0 chr1 7889653 7889676 -234774677 + AT_rich Low_complexity Low_complexity 1 23 0 299 239 125 11 chr1 7889734 7889822 -234774531 - MER5C DNA MER1_type -203 121 24 1932 150 7 3 chr1 7889870 7890157 -234774196 + AluJb SINE Alu 3 290 -22 2348 99 0 0 chr1 7890715 7891008 -234773345 + AluSx SINE Alu 2 294 -18 1850 138 29 42 chr1 7891151 7891462 -234772891 + AluSx SINE Alu 1 307 -5 2354 108 0 0 chr1 7892109 7892414 -234771939 - AluSx SINE Alu -7 305 1 1568 186 0 32 chr1 7892440 7892720 -234771633 + AluJo SINE Alu 1 271 -41 2318 106 3 0 chr1 7892938 7893239 -234771114 - AluSq SINE Alu -9 304 3 2376 109 3 0 chr1 7894084 7894387 -234769966 - AluSq SINE Alu -9 304 1 2324 113 3 0 chr1 7894423 7894724 -234769629 + AluSq SINE Alu 1 302 -11 2271 112 3 0 chr1 7894724 7895019 -234769334 + AluSx SINE Alu 1 297 -15 1419 243 82 54 chr1 7895023 7895517 -234768836 + L1M4c LINE L1 816 1295 -5268 423 0 0 0 chr1 7895517 7895564 -234768789 + (CA)n Simple_repeat Simple_repeat 2 48 0 1419 243 82 54 chr1 7895564 7896436 -234767917 + L1M4c LINE L1 1295 2385 -4178 2294 89 13 22 chr1 7896731 7897046 -234767307 + AluSx SINE Alu 1 312 0 1054 298 74 70 chr1 7897884 7898322 -234766031 + L2 LINE L2 779 1214 -2100 1817 164 10 7 chr1 7898322 7898614 -234765739 - AluJb SINE Alu -19 293 1 1054 298 74 70 chr1 7898614 7899010 -234765343 + L2 LINE L2 1214 1620 -1694 2213 129 3 3 chr1 7899010 7899319 -234765034 - AluSc SINE Alu 0 309 1 1054 298 74 70 chr1 7899319 7899466 -234764887 + L2 LINE L2 1620 1765 -1549 2185 128 0 0 chr1 7899735 7900039 -234764314 + AluSx SINE Alu 1 304 -8 2923 155 27 37 chr1 7900040 7900379 -234763974 - L1MB3 LINE L1 -37 6146 5805 2248 112 3 0 chr1 7900379 7900674 -234763679 + AluSx SINE Alu 1 296 -16 2923 155 27 37 chr1 7900674 7900878 -234763475 - L1MB3 LINE L1 -378 5805 5607 2359 82 26 7 chr1 7900878 7901183 -234763170 - AluSx SINE Alu -1 311 1 2923 155 27 37 chr1 7901183 7901237 -234763116 - L1MB3 LINE L1 -576 5607 5554 30 0 0 0 chr1 7901738 7901768 -234762585 + AT_rich Low_complexity Low_complexity 1 30 0 888 129 0 0 chr1 7901772 7901896 -234762457 - FLAM_C SINE Alu -19 124 1 297 324 176 5 chr1 7902069 7902273 -234762080 - MIR SINE MIR -11 251 13 2193 129 7 0 chr1 7902737 7903039 -234761314 - AluSx SINE Alu -8 304 1 1113 256 66 69 chr1 7903127 7903507 -234760846 + L1MEd LINE L1 572 952 -5177 2175 118 3 7 chr1 7903507 7903804 -234760549 + AluSq SINE Alu 1 296 -17 2301 104 0 3 chr1 7903808 7904107 -234760246 + AluSg SINE Alu 2 299 -11 1113 256 66 69 chr1 7904107 7904389 -234759964 + L1MEd LINE L1 955 1236 -4893 192 40 0 0 chr1 7904389 7904414 -234759939 + (TC)n Simple_repeat Simple_repeat 2 26 0 1113 256 66 69 chr1 7904414 7904701 -234759652 + L1MEd LINE L1 1236 1482 -4647 2036 123 23 10 chr1 7904701 7905009 -234759344 + AluSx SINE Alu 1 312 0 1113 256 66 69 chr1 7905009 7905039 -234759314 + L1MEd LINE L1 1482 1511 -4618 2118 124 27 0 chr1 7905275 7905574 -234758779 - AluSx SINE Alu -5 307 1 2255 114 3 0 chr1 7906085 7906384 -234757969 - AluSx SINE Alu -12 300 1 1934 163 0 10 chr1 7906823 7907124 -234757229 - AluJo SINE Alu -14 298 1 2286 81 0 40 chr1 7907166 7907488 -234756865 + AluY SINE Alu 3 311 0 2208 83 17 10 chr1 7907803 7908091 -234756262 - AluSx SINE Alu -22 290 1 922 101 20 0 chr1 7908470 7908618 -234755735 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1921 137 11 4 chr1 7908618 7908896 -234755457 - AluJb SINE Alu -32 280 1 2422 84 0 7 chr1 7910035 7910343 -234754010 - AluSc SINE Alu -3 306 1 2094 138 17 0 chr1 7910343 7910634 -234753719 - AluSx SINE Alu -16 296 1 943 178 11 11 chr1 7910978 7911152 -234753201 - FRAM SINE Alu -3 173 1 365 274 162 0 chr1 7911375 7911492 -234752861 - MIR SINE MIR -112 150 15 317 353 59 0 chr1 7911506 7911625 -234752728 - L2 LINE L2 -1 3271 3146 235 308 185 10 chr1 7911813 7912008 -234752345 - L2 LINE L2 -384 2930 2702 2275 72 11 7 chr1 7912191 7912543 -234751810 + AluSc SINE Alu 1 353 0 321 256 11 0 chr1 7912570 7912660 -234751693 + L1MC5 LINE L1 5711 5801 -2007 2154 102 17 7 chr1 7912686 7912979 -234751374 - AluSg SINE Alu -14 296 1 2697 48 0 0 chr1 7913125 7913436 -234750917 + AluY SINE Alu 1 311 0 1973 158 7 0 chr1 7913967 7914264 -234750089 + AluJb SINE Alu 1 299 -13 907 226 18 148 chr1 7914269 7914327 -234750026 + L1MC5 LINE L1 6530 6594 -1214 2255 148 0 0 chr1 7914327 7914645 -234749708 - 7SLRNA srpRNA srpRNA -2 318 1 907 226 18 148 chr1 7914645 7914763 -234749590 + L1MC5 LINE L1 6594 6726 -1082 2280 105 0 3 chr1 7914763 7915058 -234749295 - AluSx SINE Alu -18 294 1 907 226 18 148 chr1 7915058 7915155 -234749198 + L1MC5 LINE L1 6726 6834 -974 839 148 0 15 chr1 7915155 7915290 -234749063 + FLAM_C SINE Alu 1 133 0 907 226 18 148 chr1 7915290 7915637 -234748716 + L1MC5 LINE L1 6834 7001 -807 1062 231 162 35 chr1 7915656 7916033 -234748320 - MLT1D LTR MaLR 0 505 81 224 194 0 0 chr1 7916033 7916069 -234748284 + polypyrimidine Low_complexity Low_complexity 3 38 0 462 152 26 53 chr1 7916070 7916221 -234748132 + CT-rich Low_complexity Low_complexity 2 148 0 1556 171 16 49 chr1 7916246 7916551 -234747802 - AluJb SINE Alu -17 295 1 267 141 169 42 chr1 7916551 7916622 -234747731 - MLT1D LTR MaLR -418 87 8 266 200 11 89 chr1 7916657 7916747 -234747606 + L1MC5 LINE L1 7151 7233 -728 228 67 0 0 chr1 7916785 7916815 -234747538 + (CTATT)n Simple_repeat Simple_repeat 3 32 0 320 308 31 31 chr1 7916926 7917056 -234747297 + L2 LINE L2 3184 3313 0 917 285 88 9 chr1 7917064 7917568 -234746785 + L1ME2 LINE L1 5268 5829 -335 2520 71 0 10 chr1 7917597 7917908 -234746445 + AluSc SINE Alu 1 308 -1 1877 164 3 19 chr1 7917936 7918253 -234746100 + AluJb SINE Alu 1 312 0 1506 209 31 48 chr1 7918345 7918699 -234745654 + MER7A DNA MER2_type 1 346 0 1876 124 44 0 chr1 7918765 7919039 -234745314 + AluJb SINE Alu 12 297 -15 564 144 33 39 chr1 7919061 7919242 -234745111 + GA-rich Low_complexity Low_complexity 1 180 0 218 314 14 0 chr1 7919382 7919452 -234744901 + L2 LINE L2 2694 2764 -550 2346 95 7 0 chr1 7919517 7919812 -234744541 - AluSx SINE Alu -15 297 1 273 295 104 49 chr1 7919812 7920025 -234744328 + L2 LINE L2 2754 2981 -291 848 165 0 23 chr1 7920519 7920652 -234743701 + AluJo SINE Alu 5 134 -178 255 281 247 0 chr1 7920699 7920845 -234743508 - MIR SINE MIR -75 187 6 2016 139 3 0 chr1 7921227 7921525 -234742828 + AluJo SINE Alu 1 297 -15 1975 141 0 0 chr1 7921775 7922072 -234742281 - AluJo SINE Alu -13 299 3 2053 131 0 0 chr1 7922104 7922416 -234741937 + AluSx SINE Alu 1 312 0 271 227 0 15 chr1 7923032 7923098 -234741255 - MIR3 SINE MIR -31 177 113 1889 125 38 0 chr1 7924168 7924455 -234739898 + AluSx SINE Alu 1 298 -14 1864 127 30 17 chr1 7925089 7925389 -234738964 - AluJb SINE Alu -8 304 1 407 335 42 47 chr1 7925401 7925637 -234738716 + L1MEc LINE L1 2099 2333 -4063 1695 139 63 33 chr1 7925654 7925957 -234738396 + AluJo SINE Alu 1 312 0 1932 109 4 0 chr1 7925990 7926255 -234738098 - AluSx SINE Alu -46 266 1 550 317 27 57 chr1 7926585 7926954 -234737399 + L2 LINE L2 2331 2688 -626 1658 153 42 14 chr1 7926971 7927258 -234737095 - AluJo SINE Alu -17 295 1 391 49 49 0 chr1 7927261 7927322 -234737031 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 545 319 59 11 chr1 7927371 7927644 -234736709 - MLT1K LTR MaLR 0 588 303 2037 112 53 30 chr1 7927783 7928122 -234736231 - THE1B LTR MaLR -17 347 1 262 329 0 0 chr1 7928122 7928195 -234736158 + L1MEd LINE L1 446 518 -5601 358 323 51 15 chr1 7928198 7928393 -234735960 + L1MC5 LINE L1 7498 7699 -262 2000 118 0 7 chr1 7928400 7928697 -234735656 - AluSc SINE Alu -14 295 1 251 293 65 83 chr1 7929296 7929526 -234734827 - MIR SINE MIR -4 258 35 2169 125 0 0 chr1 7929529 7929841 -234734512 - AluSx SINE Alu 0 312 1 2280 78 3 0 chr1 7929937 7930233 -234734120 + AluY SINE Alu 1 297 -14 2146 97 7 0 chr1 7930234 7930523 -234733830 + AluSq SINE Alu 1 291 -22 1595 204 0 6 chr1 7930523 7930837 -234733516 - AluJo SINE Alu 0 312 1 2648 220 73 31 chr1 7930859 7931557 -234732796 - L1ME1 LINE L1 -36 6130 5394 2111 86 24 10 chr1 7931557 7931847 -234732506 - AluSq SINE Alu -19 294 1 2648 220 73 31 chr1 7931847 7931926 -234732427 - L1ME1 LINE L1 -772 5394 5320 869 189 0 0 chr1 7931927 7932108 -234732245 + FRAM SINE Alu 1 179 0 2052 206 57 66 chr1 7932114 7932167 -234732186 - L1ME1 LINE L1 -813 5333 5281 2247 87 10 0 chr1 7932167 7932467 -234731886 - AluSq SINE Alu -10 303 1 2052 206 57 66 chr1 7932467 7932891 -234731462 - L1ME1 LINE L1 -865 5281 4890 2194 111 0 3 chr1 7932891 7933198 -234731155 + AluSx SINE Alu 1 306 -6 2052 206 57 66 chr1 7933198 7933529 -234730824 - L1ME1 LINE L1 -1256 4890 4557 1479 220 12 30 chr1 7933527 7933931 -234730422 - L1ME1 LINE L1 -2313 3833 3437 * 938 78 117 0 chr1 7933940 7934068 -234730285 - AluSq/x SINE Alu -170 143 1 435 293 0 0 chr1 7934068 7934191 -234730162 - L1ME1 LINE L1 -2690 3456 3334 884 167 13 7 chr1 7934947 7935097 -234729256 + FRAM SINE Alu 1 151 -15 2283 112 0 0 chr1 7935108 7935420 -234728933 + AluSx SINE Alu 1 312 0 351 0 0 0 chr1 7935517 7935556 -234728797 + (TG)n Simple_repeat Simple_repeat 1 39 0 669 232 107 28 chr1 7935642 7935859 -234728494 + MLT1G LTR MaLR 360 503 -2 1973 135 14 0 chr1 7936191 7936488 -234727865 - AluJb SINE Alu -10 302 2 4944 164 15 38 chr1 7936591 7937568 -234726785 + LTR5 LTR ERVK 1 955 -14 2226 108 7 0 chr1 7938347 7938652 -234725701 + AluSx SINE Alu 1 307 -5 1412 163 118 11 chr1 7938851 7939121 -234725232 + AluJo SINE Alu 1 299 -13 433 158 95 120 chr1 7940117 7940275 -234724078 - MER106B DNA MER1_type -10 1049 896 1459 125 103 0 chr1 7940351 7940583 -234723770 + AluSx SINE Alu 57 312 0 1773 132 28 14 chr1 7941036 7941323 -234723030 - AluSx SINE Alu -21 291 1 250 234 0 0 chr1 7941984 7942031 -234722322 - L2 LINE L2 -1 3312 3266 180 282 0 99 chr1 7942415 7942486 -234721867 - MIR SINE MIR -34 228 165 1145 95 24 0 chr1 7942506 7942674 -234721679 - AluSg/x SINE Alu -8 304 133 245 269 30 0 chr1 7943033 7943100 -234721253 - L2 LINE L2 -551 2763 2695 2108 106 10 0 chr1 7943375 7943667 -234720686 - AluSx SINE Alu -17 295 1 1960 145 7 3 chr1 7944225 7944529 -234719824 - AluJb SINE Alu -7 305 1 438 318 63 16 chr1 7944596 7944785 -234719568 + MER20B DNA MER1_type 542 739 -44 2281 101 0 0 chr1 7945117 7945424 -234718929 - AluSq SINE Alu 0 313 7 2354 198 43 19 chr1 7945597 7946137 -234718216 + MER74A LTR ERVL 6 558 0 849 144 0 34 chr1 7946144 7946290 -234718063 + FLAM_C SINE Alu 1 141 -2 2245 104 7 0 chr1 7946513 7946822 -234717531 - AluSx SINE Alu -1 311 1 1957 147 0 10 chr1 7947651 7947964 -234716389 - AluSq SINE Alu -3 310 1 996 90 0 8 chr1 7947968 7948102 -234716251 - AluSq/x SINE Alu -179 133 1 340 312 102 5 chr1 7948531 7948717 -234715636 + MIR3 SINE MIR 2 205 -3 1667 172 26 23 chr1 7950493 7950795 -234713558 - AluJo SINE Alu -9 303 1 1737 140 0 14 chr1 7951095 7951374 -234712979 + AluJb SINE Alu 1 275 -37 582 183 0 0 chr1 7951374 7951489 -234712864 + GA-rich Low_complexity Low_complexity 4 118 0 2861 146 74 40 chr1 7951631 7951863 -234712490 + MER39B LTR ERV1 1 223 -430 1723 100 4 0 chr1 7951863 7952128 -234712225 + AluSx SINE Alu 53 318 0 2861 146 74 40 chr1 7952128 7952499 -234711854 + MER39B LTR ERV1 223 626 -27 407 221 58 0 chr1 7952501 7952605 -234711748 + L2 LINE L2 1328 1437 -1877 395 266 202 45 chr1 7952640 7952952 -234711401 + L2 LINE L2 1621 1981 -1333 911 143 0 0 chr1 7953672 7953798 -234710555 + FLAM_C SINE Alu 1 126 -7 1263 184 148 42 chr1 7954238 7954414 -234709939 + MLT1A2 LTR MaLR 2 158 -216 2159 122 0 0 chr1 7954414 7954725 -234709628 + AluSx SINE Alu 1 311 -1 1263 184 148 42 chr1 7954725 7954885 -234709468 + MLT1A2 LTR MaLR 158 374 0 547 221 10 171 chr1 7954888 7955186 -234709167 + L3 LINE CR1 1313 1562 -15 631 122 0 0 chr1 7955441 7955531 -234708822 - Alu SINE Alu -9 301 212 2146 105 114 21 chr1 7955531 7955864 -234708489 + THE1B LTR MaLR 1 364 0 1564 119 0 0 chr1 7955864 7956082 -234708271 - AluSx SINE Alu -94 218 1 267 315 62 53 chr1 7957367 7957600 -234706753 - MIR SINE MIR -6 256 29 2378 68 0 0 chr1 7958098 7958391 -234705962 + AluY SINE Alu 1 293 -18 794 135 23 23 chr1 7958400 7958533 -234705820 + FLAM_C SINE Alu 1 133 0 2058 114 6 29 chr1 7958602 7958918 -234705435 - AluSx SINE Alu -3 309 1 308 276 69 9 chr1 7958930 7959046 -234705307 + MIR SINE MIR 74 196 -66 300 306 171 5 chr1 7959204 7959420 -234704933 + L2 LINE L2 1918 2169 -1145 301 294 147 54 chr1 7959483 7959687 -234704666 + L1 LINE L1 2970 3192 -2954 820 135 0 15 chr1 7959820 7959953 -234704400 + FLAM_C SINE Alu 13 143 0 2289 97 0 25 chr1 7960027 7960347 -234704006 - AluSx SINE Alu 0 312 1 308 276 69 9 chr1 7960359 7960475 -234703878 + MIR SINE MIR 74 196 -66 383 282 171 5 chr1 7960634 7960850 -234703503 + L2 LINE L2 1918 2169 -1145 746 235 41 101 chr1 7961443 7961830 -234702523 - L2 LINE L2 0 3313 2950 1955 132 0 7 chr1 7962912 7963070 -234701283 - AluSx SINE Alu -18 294 137 2401 71 0 13 chr1 7963070 7963381 -234700972 - AluY SINE Alu -4 307 1 1955 132 0 7 chr1 7963381 7963518 -234700835 - AluSx SINE Alu -175 137 1 1420 119 21 4 chr1 7963523 7963758 -234700595 - L1PA14 LINE L1 0 6161 5923 1858 149 0 10 chr1 7964091 7964399 -234699954 + AluJb SINE Alu 1 305 -7 1179 184 0 26 chr1 7964524 7964758 -234699595 - AluJb SINE Alu 0 312 85 1489 152 17 0 chr1 7964833 7965063 -234699290 - AluSx SINE Alu -78 234 1 760 203 0 0 chr1 7965064 7965192 -234699161 - AluSq/x SINE Alu -184 129 2 1052 232 0 20 chr1 7965196 7965442 -234698911 - MLT1D-int LTR MaLR -1130 241 1 734 169 0 0 chr1 7965444 7965580 -234698773 - MLT1D LTR MaLR 0 505 370 * 949 159 19 0 chr1 7965575 7965732 -234698621 + MSTD LTR MaLR 237 396 0 1796 186 0 0 chr1 7965953 7966265 -234698088 + AluJb SINE Alu 1 312 0 30 0 0 0 chr1 7966708 7966738 -234697615 + AT_rich Low_complexity Low_complexity 1 30 0 554 155 216 0 chr1 7966743 7966840 -234697513 - FLAM_C SINE Alu -24 119 2 389 241 0 0 chr1 7967064 7967147 -234697206 - L2 LINE L2 0 3272 3190 3868 197 65 117 chr1 7967240 7968563 -234695790 - MER52A LTR ERV1 0 1278 25 268 53 26 0 chr1 7968563 7968601 -234695752 + MER52A LTR ERV1 1 39 -1716 323 256 5 85 chr1 7968683 7968776 -234695577 - Charlie7 DNA MER1_type 0 2612 2542 2208 80 7 0 chr1 7968776 7969065 -234695288 - AluY SINE Alu -20 291 1 323 256 5 85 chr1 7969065 7969170 -234695183 - Charlie7 DNA MER1_type -70 2542 2430 1279 157 59 77 chr1 7969404 7969717 -234694636 - AluJo SINE Alu 0 308 1 450 359 69 7 chr1 7969810 7970114 -234694239 + L2 LINE L2 2632 2954 -360 239 231 19 0 chr1 7970213 7970265 -234694088 + L2 LINE L2 3247 3299 -14 250 288 113 38 chr1 7970270 7970430 -234693923 + L2 LINE L2 2233 2404 -910 1034 165 54 66 chr1 7970929 7971171 -234693182 - L1MC3 LINE L1 -1152 6633 6395 581 295 43 5 chr1 7971252 7971459 -234692894 - MIR SINE MIR -28 234 20 2012 149 30 25 chr1 7971895 7972257 -234692096 - THE1B LTR MaLR 0 364 1 1085 224 19 0 chr1 7972369 7972574 -234691779 - AluJb SINE Alu -19 293 85 416 213 4 107 chr1 7972574 7972686 -234691667 - AluSp/q SINE Alu -53 250 173 2557 77 0 3 chr1 7972747 7973058 -234691295 + AluY SINE Alu 1 310 -1 454 267 82 0 chr1 7977122 7977268 -234687085 + MIR SINE MIR 84 241 -21 182 339 25 16 chr1 7977534 7977655 -234686698 + MIR SINE MIR 109 230 -32 654 186 16 31 chr1 7978463 7978592 -234685761 + AluSq/x SINE Alu 1 127 -185 248 233 26 9 chr1 7978592 7978708 -234685645 + (TG)n Simple_repeat Simple_repeat 1 118 0 300 299 35 11 chr1 7978728 7978815 -234685538 + L1MC4 LINE L1 6615 6703 -1339 414 173 18 9 chr1 7978815 7978925 -234685428 + (TG)n Simple_repeat Simple_repeat 1 111 0 241 146 0 0 chr1 7979155 7979196 -234685157 + LTR54 LTR ERV1 402 442 -68 181 252 57 65 chr1 7979638 7979761 -234684592 - L2 LINE L2 -2858 456 335 2558 60 0 3 chr1 7979912 7980210 -234684143 - AluSq SINE Alu -16 297 1 424 132 0 15 chr1 7980236 7980304 -234684049 + AluS SINE Alu 2 68 -250 405 255 100 89 chr1 7980406 7980677 -234683676 + L1MC5 LINE L1 7492 7765 -196 221 94 75 0 chr1 7980679 7980732 -234683621 + (TA)n Simple_repeat Simple_repeat 2 58 0 1949 166 0 3 chr1 7980733 7981029 -234683324 - AluJb SINE Alu -17 295 1 6689 45 40 11 chr1 7981159 7982031 -234682322 + MER11D LTR ERVK 1 897 0 1056 149 18 0 chr1 7982109 7982277 -234682076 - AluJb SINE Alu -5 307 137 451 322 47 0 chr1 7982622 7982771 -234681582 - L1ME LINE L1 -359 5762 5607 2192 107 24 3 chr1 7982867 7983158 -234681195 - AluSx SINE Alu -15 297 1 1704 138 99 18 chr1 7983795 7984078 -234680275 - AluJo SINE Alu -6 306 1 297 115 0 167 chr1 7986036 7986210 -234678143 + (CCCCG)n Simple_repeat Simple_repeat 2 146 0 1683 152 38 3 chr1 7986424 7986714 -234677639 + AluSg SINE Alu 2 301 -9 2930 98 33 15 chr1 7986837 7987294 -234677059 - MER4C LTR ERV1 0 465 1 1871 151 11 0 chr1 7987377 7987661 -234676692 + AluJo SINE Alu 22 308 -4 770 83 9 0 chr1 7987678 7987787 -234676566 + MER83 LTR ERV1 1 110 -338 1651 164 78 55 chr1 7987790 7988173 -234676180 + MER83 LTR ERV1 56 447 -1 2418 95 0 0 chr1 7988280 7988574 -234675779 - AluSq SINE Alu -18 295 2 2384 98 0 0 chr1 7988575 7988870 -234675483 - AluSx SINE Alu -17 295 1 877 145 7 0 chr1 7989258 7989396 -234674957 - LTR23 LTR ERV1 0 437 299 2037 71 12 0 chr1 7989401 7989653 -234674700 - AluSq SINE Alu -10 303 49 1850 171 3 0 chr1 7989754 7990046 -234674307 + AluJb SINE Alu 18 310 -2 1958 94 36 50 chr1 7990080 7990357 -234673996 + AluSq SINE Alu 3 275 -38 467 146 0 11 chr1 7990357 7990446 -234673907 + (GGGA)n Simple_repeat Simple_repeat 4 91 0 3831 132 18 3 chr1 7990460 7991072 -234673281 - MER41B LTR ERV1 -14 621 1 922 133 0 0 chr1 7991072 7991215 -234673138 + L1PB2 LINE L1 6001 6143 -8 1190 185 93 0 chr1 7991227 7991486 -234672867 - LTR23 LTR ERV1 -154 283 1 2226 115 10 13 chr1 7992089 7992402 -234671951 - AluSx SINE Alu 0 312 1 4239 154 15 50 chr1 7992417 7993274 -234671079 - L1MB2 LINE L1 -17 6154 5328 510 111 0 0 chr1 7993366 7993447 -234670906 + LTR24C LTR ERV1 1 81 -554 411 54 0 0 chr1 7993494 7993550 -234670803 + LTR24C LTR ERV1 580 635 0 3599 147 26 36 chr1 7993557 7993577 -234670776 + L1MB5 LINE L1 5117 5136 -1038 1512 187 6 78 chr1 7993577 7993909 -234670444 + AluJb SINE Alu 5 312 0 3599 147 26 36 chr1 7993909 7993976 -234670377 + L1MB5 LINE L1 5136 5202 -972 596 202 73 0 chr1 7993976 7994100 -234670253 + FLAM_A SINE Alu 1 133 0 3599 147 26 36 chr1 7994100 7994415 -234669938 + L1MB5 LINE L1 5202 5519 -655 2049 163 0 0 chr1 7994415 7994715 -234669638 + AluSx SINE Alu 1 300 -12 3599 147 26 36 chr1 7994715 7995048 -234669305 + L1MB5 LINE L1 5519 5839 -335 757 183 0 0 chr1 7995048 7995179 -234669174 + FLAM_A SINE Alu 1 131 -2 3599 147 26 36 chr1 7995179 7995316 -234669037 + L1MB5 LINE L1 5839 5976 -198 754 194 127 18 chr1 7995470 7995701 -234668652 + L1MB5 LINE L1 5920 6174 0 232 179 0 0 chr1 7995711 7995750 -234668603 + Alu SINE Alu 250 288 -13 449 265 60 13 chr1 7995754 7995905 -234668448 - LTR37A LTR ERV1 -268 158 1 3057 116 27 51 chr1 7996015 7996156 -234668197 + MER41E LTR ERV1 1 144 -368 2246 117 0 7 chr1 7996156 7996463 -234667890 + AluSq SINE Alu 2 306 -7 3057 116 27 51 chr1 7996463 7996477 -234667876 + MER41E LTR ERV1 144 157 -355 2540 40 10 3 chr1 7996477 7996778 -234667575 + AluY SINE Alu 1 303 -8 3057 116 27 51 chr1 7996778 7997146 -234667207 + MER41E LTR ERV1 157 512 0 379 279 184 14 chr1 7997400 7997547 -234666806 + MER5A DNA MER1_type 18 189 0 2491 130 46 35 chr1 7997758 7998351 -234666002 - MER4E LTR ERV1 0 766 5 1209 136 45 112 chr1 7998816 7998990 -234665363 - LTR8A LTR ERV1 0 727 578 2168 150 0 6 chr1 7998990 7999304 -234665049 - AluSx SINE Alu 0 312 1 1209 136 45 112 chr1 7999304 7999413 -234664940 - LTR8A LTR ERV1 -149 578 463 1117 185 60 14 chr1 7999413 7999703 -234664650 + LTR19A LTR ERV1 1 357 -129 600 169 0 0 chr1 7999803 7999927 -234664426 + LTR19A-int LTR ERV1 1059 1182 -4404 46057 92 9 9 chr1 7999991 8000036 -234664317 + LTR19A-int LTR ERV1 1178 1222 -6497 2308 79 0 4 chr1 8000036 8000342 -234664011 + AluY SINE Alu 3 307 0 46057 92 9 9 chr1 8000342 8005869 -234658484 + LTR19A-int LTR ERV1 1222 6749 -970 2214 87 14 3 chr1 8005869 8006158 -234658195 + AluSp SINE Alu 5 296 -17 46057 92 9 9 chr1 8006158 8007129 -234657224 + LTR19A-int LTR ERV1 6749 7719 0 1875 151 158 28 chr1 8007129 8007559 -234656794 + LTR19A LTR ERV1 1 486 0 2261 150 57 50 chr1 8007559 8008019 -234656334 - LTR8A LTR ERV1 -264 463 1 2175 154 0 0 chr1 8008122 8008434 -234655919 + AluSx SINE Alu 1 312 0 225 114 29 0 chr1 8008444 8008479 -234655874 + U2 snRNA snRNA 3 38 -150 985 257 62 48 chr1 8008600 8008919 -234655434 + MER110A LTR ERV1 41 354 -114 2323 112 0 16 chr1 8008919 8009232 -234655121 + AluSg SINE Alu 1 308 -2 985 257 62 48 chr1 8009232 8009272 -234655081 + MER110A LTR ERV1 354 392 -76 3850 114 68 49 chr1 8009272 8009950 -234654403 + LTR8 LTR ERV1 1 691 0 985 257 62 48 chr1 8009950 8010009 -234654344 + MER110A LTR ERV1 392 466 -2 265 229 16 0 chr1 8010015 8010076 -234654277 + MER45 DNA AcHobo 1 62 -978 188 250 0 0 chr1 8010089 8010129 -234654224 + MIR SINE MIR 221 260 -2 627 130 52 0 chr1 8010947 8011062 -234653291 - AluSg/x SINE Alu -3 309 189 367 102 0 0 chr1 8011470 8011519 -234652834 + LTR8 LTR ERV1 643 691 0 184 256 47 0 chr1 8011565 8011608 -234652745 + MER5A DNA MER1_type 106 150 -39 28 0 0 0 chr1 8011859 8011887 -234652466 + AT_rich Low_complexity Low_complexity 1 28 0 1084 156 67 45 chr1 8012358 8012582 -234651771 + AluJb SINE Alu 79 307 -5 2219 112 0 26 chr1 8012601 8012905 -234651448 - AluSx SINE Alu -16 296 1 2235 110 7 10 chr1 8013677 8013985 -234650368 + AluSx SINE Alu 1 307 -5 997 147 13 6 chr1 8014463 8014620 -234649733 - AluJo/FRAM SINE Alu -11 301 144 251 154 0 19 chr1 8014622 8014674 -234649679 + Alu SINE Alu 252 302 0 2279 112 0 0 chr1 8014720 8015014 -234649339 - AluSq SINE Alu -19 294 1 2136 104 4 0 chr1 8016269 8016548 -234647805 + AluSx SINE Alu 1 280 -32 417 123 0 0 chr1 8016585 8016650 -234647703 + (CA)n Simple_repeat Simple_repeat 2 66 0 669 245 55 19 chr1 8017354 8017611 -234646742 + L2 LINE L2 2250 2515 -799 845 114 0 53 chr1 8017619 8017750 -234646603 - FLAM_C SINE Alu -14 129 6 410 273 140 49 chr1 8017753 8018233 -234646120 + L2 LINE L2 2520 3064 -249 2152 113 7 0 chr1 8018233 8018549 -234645804 + AluSx SINE Alu 1 318 0 410 273 140 49 chr1 8018549 8018707 -234645646 + L2 LINE L2 3064 3206 -107 958 166 0 0 chr1 8018908 8019053 -234645300 + AluJo SINE Alu 1 145 -167 1816 142 13 43 chr1 8019054 8019198 -234645155 + AluSx SINE Alu 1 133 -179 1934 149 7 10 chr1 8019198 8019494 -234644859 + AluSx SINE Alu 4 298 -14 1816 142 13 43 chr1 8019494 8019652 -234644701 + AluSx SINE Alu 133 294 -18 207 0 0 0 chr1 8019809 8019832 -234644521 + (TCC)n Simple_repeat Simple_repeat 1 23 0 698 134 188 54 chr1 8020198 8020347 -234644006 - AluJo/FRAM SINE Alu -10 302 134 2260 71 39 0 chr1 8020347 8020627 -234643726 - AluY SINE Alu -20 291 1 2436 99 0 0 chr1 8020631 8020934 -234643419 - AluSx SINE Alu -9 303 1 2065 153 0 7 chr1 8020938 8021246 -234643107 - AluSx SINE Alu -6 306 1 201 293 116 80 chr1 8021568 8021793 -234642560 + L2 LINE L2 3034 3266 -6 2386 107 0 0 chr1 8021793 8022103 -234642250 + AluSx SINE Alu 1 310 -2 248 321 76 23 chr1 8022559 8022690 -234641663 + MIR SINE MIR 103 240 -22 1760 116 0 0 chr1 8023314 8023539 -234640814 + AluSg/x SINE Alu 75 299 -13 500 309 15 13 chr1 8023723 8023991 -234640362 - MER115 DNA AcHobo -339 354 25 2419 92 0 0 chr1 8024011 8024305 -234640048 - AluSx SINE Alu -18 294 1 335 296 165 24 chr1 8024473 8024679 -234639674 + MIR SINE MIR 7 241 -21 2324 96 3 0 chr1 8025214 8025505 -234638848 + AluSx SINE Alu 1 292 -20 396 0 0 0 chr1 8025509 8025553 -234638800 + (CA)n Simple_repeat Simple_repeat 2 45 0 2039 117 10 29 chr1 8025591 8025898 -234638455 + AluSx SINE Alu 1 301 -11 1391 115 0 0 chr1 8026321 8026503 -234637850 + AluSg/x SINE Alu 129 310 0 1653 177 71 159 chr1 8026707 8027340 -234637013 + MER63C DNA MER1_type 1 531 -529 947 205 91 24 chr1 8027340 8027550 -234636803 + MER58A DNA MER1_type 1 224 0 1653 177 71 159 chr1 8027550 8027827 -234636526 + MER63C DNA MER1_type 531 831 -99 214 98 39 0 chr1 8027827 8027878 -234636475 + (TA)n Simple_repeat Simple_repeat 2 54 0 344 207 135 0 chr1 8027878 8027989 -234636364 + MER63 DNA MER1_type 801 926 -135 1794 77 65 35 chr1 8027994 8028255 -234636098 + AluSg SINE Alu 26 294 -16 1698 206 3 0 chr1 8028258 8028550 -234635803 - AluJo SINE Alu -19 293 1 403 162 15 0 chr1 8028584 8028652 -234635701 - FRAM/FAM SINE Alu -108 68 1 447 206 98 0 chr1 8028658 8028760 -234635593 + MER63 DNA MER1_type 946 1057 -3 2326 79 3 7 chr1 8028987 8029278 -234635075 + AluSx SINE Alu 1 290 -22 212 75 0 25 chr1 8029281 8029321 -234635032 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 236 259 19 0 chr1 8029418 8029472 -234634881 + L3 LINE CR1 880 934 -643 1174 187 61 25 chr1 8030088 8030263 -234634090 + MLT1B LTR MaLR 2 169 -221 1826 116 33 14 chr1 8030263 8030539 -234633814 + AluJb SINE Alu 1 281 -31 2283 113 0 3 chr1 8030539 8030840 -234633513 - AluSx SINE Alu -11 301 1 1174 187 61 25 chr1 8030840 8031084 -234633269 + MLT1B LTR MaLR 168 373 -17 2122 99 11 3 chr1 8032558 8032862 -234631491 + AluSx SINE Alu 1 306 0 2157 123 0 10 chr1 8032862 8033170 -234631183 + AluSx SINE Alu 1 305 -7 1460 219 26 6 chr1 8033955 8034302 -234630051 + L1MC4 LINE L1 7280 7633 -409 958 170 0 6 chr1 8034402 8034561 -234629792 - AluSq SINE Alu -19 294 137 1285 170 208 0 chr1 8034680 8035107 -234629246 + Charlie1b DNA MER1_type 6 523 0 2175 95 63 0 chr1 8035313 8035598 -234628755 + AluSq SINE Alu 1 303 -10 241 202 228 70 chr1 8036301 8036372 -234627981 + MER112 DNA MER1_type 8 66 -194 348 24 0 0 chr1 8036372 8036413 -234627940 + (TG)n Simple_repeat Simple_repeat 1 41 0 241 202 228 70 chr1 8036413 8036455 -234627898 + MER112 DNA MER1_type 66 139 -121 198 91 0 0 chr1 8036466 8036499 -234627854 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1793 137 128 18 chr1 8036511 8036681 -234627672 + THE1C LTR MaLR 2 152 -223 198 0 0 0 chr1 8036681 8036703 -234627650 + (TC)n Simple_repeat Simple_repeat 1 22 0 1793 137 128 18 chr1 8036703 8036869 -234627484 + THE1C LTR MaLR 152 375 0 523 124 165 10 chr1 8036869 8036966 -234627387 - AluJb SINE Alu -200 112 1 291 207 81 58 chr1 8036966 8037053 -234627300 + MER112 DNA MER1_type 167 255 -5 423 200 161 141 chr1 8037782 8037933 -234626420 + L1M4 LINE L1 3670 3817 -2329 1997 105 14 18 chr1 8037933 8038246 -234626107 + AluSx SINE Alu 1 312 0 423 200 161 141 chr1 8038246 8038359 -234625994 + L1M4 LINE L1 3817 3926 -2220 1979 156 17 3 chr1 8038359 8038661 -234625692 - AluSx SINE Alu -6 306 1 423 200 161 141 chr1 8038661 8038799 -234625554 + L1M4 LINE L1 3926 4082 -2064 248 235 202 45 chr1 8038803 8039050 -234625303 + L1MEd LINE L1 586 871 -5248 1728 211 7 45 chr1 8039058 8039147 -234625206 + L1M4 LINE L1 4709 4800 -1346 1830 104 94 14 chr1 8039147 8039434 -234624919 + AluSx SINE Alu 1 310 -2 1728 211 7 45 chr1 8039434 8039560 -234624793 + L1M4 LINE L1 4800 4929 -1217 1696 174 9 25 chr1 8039560 8039694 -234624659 + AluJo SINE Alu 1 136 -176 1993 142 0 32 chr1 8039694 8040010 -234624343 + AluSx SINE Alu 1 306 -6 1696 174 9 25 chr1 8040010 8040192 -234624161 + AluJo SINE Alu 136 312 0 1728 211 7 45 chr1 8040192 8040420 -234623933 + L1M4 LINE L1 4929 5136 -1010 502 298 35 67 chr1 8040428 8040710 -234623643 + L1MEd LINE L1 2253 2525 -3604 369 162 10 30 chr1 8040885 8040984 -234623369 + GA-rich Low_complexity Low_complexity 2 98 0 5519 141 72 15 chr1 8040984 8041709 -234622644 + L1MC1 LINE L1 5114 5929 -404 2289 82 0 13 chr1 8041709 8042014 -234622339 + AluSc SINE Alu 1 301 -8 5519 141 72 15 chr1 8042014 8042439 -234621914 + L1MC1 LINE L1 5929 6328 -5 686 179 42 2 chr1 8042445 8042682 -234621671 + AluJ SINE Alu 2 290 -22 27 0 0 0 chr1 8042702 8042729 -234621624 + AT_rich Low_complexity Low_complexity 1 27 0 350 222 56 58 chr1 8042748 8042896 -234621457 + L1MCa LINE L1 1941 2064 -4362 425 67 67 0 chr1 8042897 8043001 -234621352 + (TA)n Simple_repeat Simple_repeat 2 112 0 302 279 29 44 chr1 8043005 8043141 -234621212 + L1MCa LINE L1 1931 2064 -4362 200 59 29 0 chr1 8043142 8043176 -234621177 + (TA)n Simple_repeat Simple_repeat 2 36 0 306 197 61 0 chr1 8043356 8043422 -234620931 + L1MCa LINE L1 1995 2064 -4362 * 375 285 30 17 chr1 8043369 8043529 -234620824 - L1MC4 LINE L1 -1340 6982 1906 268 43 43 0 chr1 8043530 8043576 -234620777 + (TA)n Simple_repeat Simple_repeat 2 49 0 2350 120 0 0 chr1 8043586 8043894 -234620459 + AluSx SINE Alu 1 308 -4 434 202 141 46 chr1 8043905 8044251 -234620102 + L1MEd LINE L1 844 1250 -4869 554 310 35 4 chr1 8044279 8044508 -234619845 + L1M4 LINE L1 4460 4695 -1451 1877 170 3 0 chr1 8044637 8044919 -234619434 + AluJo SINE Alu 1 283 -29 652 266 144 9 chr1 8045085 8045230 -234619123 + MIR SINE MIR 3 127 -135 2362 102 0 3 chr1 8045230 8045534 -234618819 + AluSg SINE Alu 1 303 -7 652 266 144 9 chr1 8045534 8045617 -234618736 + MIR SINE MIR 127 262 0 1960 148 7 7 chr1 8045628 8045931 -234618422 + AluSx SINE Alu 1 303 -9 2374 89 3 0 chr1 8046176 8046479 -234617874 - AluSq SINE Alu -9 304 1 218 230 71 95 chr1 8046533 8046659 -234617694 + MIR3 SINE MIR 82 204 -4 2242 121 20 0 chr1 8047002 8047308 -234617045 + AluSx SINE Alu 1 312 0 950 176 78 5 chr1 8048399 8048603 -234615750 - MER20 DNA MER1_type 0 219 1 308 262 85 32 chr1 8048845 8049008 -234615345 + MIR SINE MIR 15 187 -62 2585 52 10 7 chr1 8049125 8049433 -234614920 - AluY SINE Alu -2 309 1 1982 134 33 16 chr1 8049527 8049832 -234614521 - AluJo SINE Alu -2 310 1 880 106 29 39 chr1 8049984 8050384 -234613969 + (CA)n Simple_repeat Simple_repeat 1 396 0 556 134 43 12 chr1 8050437 8050691 -234613662 + (CA)n Simple_repeat Simple_repeat 1 262 0 464 145 120 51 chr1 8050809 8050926 -234613427 - L2 LINE L2 0 3313 3189 1963 163 10 3 chr1 8051003 8051310 -234613043 + AluJb SINE Alu 3 311 -1 1914 158 3 23 chr1 8051320 8051623 -234612730 + AluJo SINE Alu 3 299 -13 318 264 32 8 chr1 8052341 8052466 -234611887 - L2 LINE L2 -292 2980 2853 2132 123 0 0 chr1 8052592 8052901 -234611452 + AluSx SINE Alu 1 309 0 246 160 0 0 chr1 8053059 8053109 -234611244 + L1M4 LINE L1 5408 5457 -727 508 68 55 0 chr1 8053126 8053199 -234611154 - L1MA8 LINE L1 -341 5950 5874 1101 173 19 39 chr1 8053283 8053360 -234610993 - AluJo SINE Alu -103 209 132 2296 112 3 10 chr1 8053360 8053674 -234610679 - AluSx SINE Alu 0 312 1 2813 19 0 3 chr1 8053675 8053987 -234610366 - AluY SINE Alu 0 311 1 1101 173 19 39 chr1 8053987 8054115 -234610238 - AluJo SINE Alu -179 133 6 184 364 11 0 chr1 8054254 8054342 -234610011 - L2 LINE L2 -785 2529 2441 969 201 91 80 chr1 8054545 8054761 -234609592 + LTR56 LTR ERV1 9 221 -216 2385 83 0 13 chr1 8054761 8055062 -234609291 + AluSg SINE Alu 1 297 -13 969 201 91 80 chr1 8055062 8055292 -234609061 + LTR56 LTR ERV1 221 437 0 391 186 145 40 chr1 8055582 8055706 -234608647 + MIR SINE MIR 14 150 -112 681 107 34 6 chr1 8055707 8055943 -234608410 + AluJ SINE Alu 1 292 -20 259 284 54 0 chr1 8055972 8056046 -234608307 + MIR SINE MIR 180 257 -5 198 254 45 15 chr1 8056076 8056143 -234608210 - MIR SINE MIR -131 131 63 1739 169 3 23 chr1 8056222 8056524 -234607829 - AluJb SINE Alu -16 296 1 1883 170 10 6 chr1 8056688 8056999 -234607354 + AluJo SINE Alu 1 312 0 573 211 59 0 chr1 8057707 8057859 -234606494 + MER20 DNA MER1_type 56 216 -3 2477 86 0 0 chr1 8057897 8058198 -234606155 + AluSx SINE Alu 1 301 -11 834 232 75 46 chr1 8058224 8058438 -234605915 - MIR SINE MIR -10 252 29 2201 83 0 0 chr1 8058438 8058702 -234605651 - AluSq SINE Alu -11 302 39 834 232 75 46 chr1 8058702 8058728 -234605625 - MIR SINE MIR -233 29 5 2509 81 7 0 chr1 8060061 8060369 -234603984 - AluSq SINE Alu -3 310 1 2166 94 0 0 chr1 8061116 8061392 -234602961 + AluSx SINE Alu 1 276 -36 389 279 85 0 chr1 8061871 8062036 -234602317 + (CCCCAG)n Simple_repeat Simple_repeat 1 179 0 618 124 171 0 chr1 8062292 8062397 -234601956 + FRAM SINE Alu 46 168 -8 221 302 93 35 chr1 8062457 8062629 -234601724 - L2 LINE L2 -665 2649 2468 2129 116 19 41 chr1 8062662 8062980 -234601373 + AluSx SINE Alu 1 311 -1 581 272 241 18 chr1 8063246 8063628 -234600725 + MLT1J LTR MaLR 43 509 -2 3532 176 48 38 chr1 8064210 8064587 -234599766 - L1MB7 LINE L1 -1 6183 5811 2152 107 3 10 chr1 8064587 8064887 -234599466 - AluSx SINE Alu -13 299 2 3532 176 48 38 chr1 8064887 8065182 -234599171 - L1MB7 LINE L1 -373 5811 5498 1351 145 123 45 chr1 8065182 8065331 -234599022 - AluJo SINE Alu -22 290 154 2411 93 0 0 chr1 8065331 8065631 -234598722 - AluSq SINE Alu -11 302 3 1351 145 123 45 chr1 8065631 8065750 -234598603 - AluJo SINE Alu -158 154 1 3532 176 48 38 chr1 8065750 8065923 -234598430 - L1MB7 LINE L1 -686 5498 5328 285 128 0 0 chr1 8065923 8065970 -234598383 + (TC)n Simple_repeat Simple_repeat 2 48 0 2232 125 3 0 chr1 8065978 8066283 -234598070 - AluSx SINE Alu -6 306 1 1206 198 24 10 chr1 8066283 8066572 -234597781 - L1MB7 LINE L1 -809 5337 5042 1019 221 36 50 chr1 8066558 8066648 -234597705 - L1MB7 LINE L1 -1346 4800 4710 * 2040 140 7 0 chr1 8066648 8066941 -234597412 - AluSx SINE Alu -13 299 5 1019 221 36 50 chr1 8066941 8067208 -234597145 - L1MB7 LINE L1 -1436 4710 4448 686 169 46 23 chr1 8067283 8067413 -234596940 + AluJo/FLAM SINE Alu 1 133 -169 2177 110 16 7 chr1 8067413 8067723 -234596630 + AluSq SINE Alu 1 313 0 388 288 137 36 chr1 8067735 8067874 -234596479 - L1ME3A LINE L1 -23 6147 5995 555 169 0 0 chr1 8067897 8067986 -234596367 - FLAM_A SINE Alu -46 96 8 907 208 11 60 chr1 8068041 8068306 -234596047 - L1ME3A LINE L1 -224 5946 5695 23 0 0 0 chr1 8068794 8068817 -234595536 + AT_rich Low_complexity Low_complexity 1 23 0 2284 94 3 7 chr1 8069337 8069636 -234594717 + AluY SINE Alu 3 300 -11 6798 116 3 8 chr1 8069640 8070640 -234593713 + HERVFH19I LTR ERV1 1210 2204 -5515 2182 74 0 0 chr1 8070744 8071001 -234593352 - AluY SINE Alu -54 257 1 2610 121 36 5 chr1 8071027 8071416 -234592937 + HERVFH19I LTR ERV1 1 401 -7318 * 2877 137 11 4 chr1 8071409 8071876 -234592477 + HERVFH19I LTR ERV1 702 1171 -4415 824 114 14 2 chr1 8072261 8072484 -234591869 + AluJ SINE Alu 29 300 -12 294 202 83 89 chr1 8072782 8072966 -234591387 + MLT1C LTR MaLR 103 268 -199 2037 106 24 3 chr1 8073010 8073303 -234591050 + AluSx SINE Alu 1 299 -13 1706 161 4 4 chr1 8073608 8073888 -234590465 - AluJb SINE Alu -18 294 15 1957 114 19 62 chr1 8074415 8074740 -234589613 - AluSx SINE Alu -1 311 1 183 337 101 6 chr1 8074773 8074942 -234589411 + L2 LINE L2 2468 2652 -662 629 123 170 0 chr1 8075005 8075111 -234589242 - FRAM SINE Alu -7 169 46 1366 113 10 0 chr1 8076456 8076660 -234587693 + MLT2A2 LTR ERVL 1 206 -247 832 116 68 27 chr1 8076661 8076807 -234587546 + AluSq/x SINE Alu 1 152 -161 351 153 0 0 chr1 8076808 8076867 -234587486 + Alu SINE Alu 241 299 -2 * 1817 81 18 56 chr1 8076849 8077048 -234587305 + MLT2A2 LTR ERVL 181 386 -67 2161 86 30 7 chr1 8077048 8077349 -234587004 + AluY SINE Alu 1 308 -3 1817 81 18 56 chr1 8077349 8077369 -234586984 + MLT2A2 LTR ERVL 386 405 -48 1909 147 3 3 chr1 8077369 8077669 -234586684 + AluSx SINE Alu 1 300 -12 1817 81 18 56 chr1 8077669 8077732 -234586621 + MLT2A2 LTR ERVL 405 453 0 1839 157 10 13 chr1 8078403 8078581 -234585772 - AluJb SINE Alu 0 312 134 2232 96 0 7 chr1 8078581 8078883 -234585470 - AluSq SINE Alu -13 300 1 1839 157 10 13 chr1 8078883 8079017 -234585336 - AluJb SINE Alu -178 134 1 2123 192 47 5 chr1 8079297 8079725 -234584628 + L1MB4 LINE L1 5696 6141 -39 248 189 0 0 chr1 8079725 8079762 -234584591 + Alu SINE Alu 1 37 -265 604 124 0 0 chr1 8079762 8079851 -234584502 - AluSg/x SINE Alu -9 303 215 1048 113 38 6 chr1 8079857 8080017 -234584336 - AluSq SINE Alu -148 165 1 279 277 64 14 chr1 8080029 8080170 -234584183 + L2 LINE L2 2700 2847 -467 233 211 197 0 chr1 8080174 8080245 -234584108 - MLT1E2 LTR MaLR -368 258 174 980 153 13 0 chr1 8080261 8080418 -234583935 - FRAM SINE Alu -1 175 17 1550 164 54 0 chr1 8080643 8080923 -234583430 + AluJb SINE Alu 1 295 -17 1769 101 4 4 chr1 8080979 8081226 -234583127 - AluSq SINE Alu -66 247 1 22 56 0 0 chr1 8081666 8081702 -234582651 + AT_rich Low_complexity Low_complexity 1 36 0 611 214 29 46 chr1 8081714 8081887 -234582466 + L1MD2 LINE L1 6180 6349 -10 * 1361 168 51 9 chr1 8081863 8082164 -234582189 + L1MD3 LINE L1 7600 7994 -1 2511 51 3 6 chr1 8082366 8082678 -234581675 + AluSq SINE Alu 3 313 0 1310 119 0 10 chr1 8083280 8083474 -234580879 - AluSx SINE Alu -57 255 64 1650 125 33 22 chr1 8083482 8083754 -234580599 - AluSx SINE Alu -23 289 15 1833 139 14 7 chr1 8084240 8084534 -234579819 - AluJb SINE Alu -16 296 1 790 138 69 0 chr1 8084538 8084681 -234579672 - MLT1B LTR MaLR -215 175 23 337 189 0 0 chr1 8084681 8084734 -234579619 + Alu SINE Alu 1 53 -249 * 361 65 0 0 chr1 8084729 8084775 -234579578 + FLAM SINE Alu 81 126 -7 2434 80 0 0 chr1 8084788 8085099 -234579254 + AluSx SINE Alu 1 311 -1 199 342 17 42 chr1 8085315 8085435 -234578918 + L3b LINE CR1 1218 1334 -249 201 138 0 0 chr1 8085755 8085784 -234578569 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 832 171 0 11 chr1 8085786 8085967 -234578386 + GA-rich Low_complexity Low_complexity 1 179 0 1742 131 26 35 chr1 8085969 8086282 -234578071 + AluSx SINE Alu 1 310 -2 547 190 107 133 chr1 8086562 8086909 -234577444 - Charlie4a DNA MER1_type -19 489 152 952 139 0 0 chr1 8086936 8087107 -234577246 + FRAM SINE Alu 2 172 0 653 171 8 0 chr1 8088075 8088198 -234576155 - L1MB7 LINE L1 -16 6168 6045 28 29 0 0 chr1 8088199 8088234 -234576119 + AT_rich Low_complexity Low_complexity 1 35 0 1327 155 5 0 chr1 8088240 8088453 -234575900 - AluJo SINE Alu -24 288 75 2076 104 21 0 chr1 8088636 8088925 -234575428 + AluSx SINE Alu 1 295 -17 257 0 0 29 chr1 8089702 8089736 -234574617 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 276 272 93 25 chr1 8089835 8090028 -234574325 + MIR SINE MIR 2 197 -31 1941 108 29 55 chr1 8090130 8090437 -234573916 + AluSq SINE Alu 1 299 -14 265 298 46 53 chr1 8091636 8091767 -234572586 + MER5A DNA MER1_type 46 175 -14 1948 109 30 46 chr1 8091844 8092146 -234572207 - AluSx SINE Alu -15 297 1 841 170 0 0 chr1 8092559 8092700 -234571653 + FLAM_C SINE Alu 1 141 -2 1591 204 31 28 chr1 8092740 8093128 -234571225 + MLT2C1 LTR ERVL 1 389 -8 673 141 0 113 chr1 8093336 8093478 -234570875 - AluJo SINE Alu -178 134 9 1406 131 49 16 chr1 8093482 8093727 -234570626 - AluJo SINE Alu -18 294 42 496 306 153 0 chr1 8094142 8094358 -234569995 - MIR SINE MIR 0 262 14 1506 162 0 81 chr1 8096246 8096431 -234567922 - AluJb SINE Alu -6 306 158 2233 103 0 3 chr1 8096431 8096732 -234567621 - AluSx SINE Alu -11 301 2 1506 162 0 81 chr1 8096732 8096879 -234567474 - AluJb SINE Alu -154 158 1 2186 91 13 3 chr1 8097605 8097914 -234566439 + AluSx SINE Alu 1 312 0 2022 85 26 29 chr1 8097926 8098232 -234566121 + AluSg SINE Alu 1 305 -5 1735 156 30 7 chr1 8098687 8098982 -234565371 + AluJo SINE Alu 1 302 -10 240 111 0 0 chr1 8099078 8099114 -234565239 + (TG)n Simple_repeat Simple_repeat 2 37 0 895 132 0 0 chr1 8099140 8099276 -234565077 + AluJb SINE Alu 1 136 -176 2218 103 3 0 chr1 8099868 8100169 -234564184 - AluSx SINE Alu -8 304 3 203 322 17 0 chr1 8100564 8100623 -234563730 + L2 LINE L2 3244 3303 -10 2195 100 0 0 chr1 8100815 8101105 -234563248 + AluY SINE Alu 1 290 -21 224 209 0 0 chr1 8103208 8103251 -234561102 - L2 LINE L2 0 3272 3230 297 280 118 0 chr1 8103286 8103379 -234560974 - L2 LINE L2 -338 2976 2873 297 322 68 1 chr1 8103651 8103797 -234560556 + MIR SINE MIR 18 169 -67 1971 148 0 0 chr1 8104025 8104323 -234560030 - AluJo SINE Alu -14 298 1 2170 92 7 13 chr1 8105151 8105456 -234558897 + AluSx SINE Alu 1 303 -9 531 287 51 19 chr1 8105675 8105791 -234558562 - MER2 DNA MER2_type 0 345 234 774 167 8 0 chr1 8105791 8105923 -234558430 + FLAM_C SINE Alu 1 133 0 531 287 51 19 chr1 8105923 8106022 -234558331 - MER2 DNA MER2_type -111 234 123 2163 92 3 0 chr1 8106023 8106317 -234558036 + AluSq SINE Alu 1 295 -18 774 134 84 0 chr1 8106319 8106438 -234557915 + AluSg/x SINE Alu 145 273 -39 590 215 25 0 chr1 8106445 8106566 -234557787 - MER2 DNA MER2_type -220 125 2 1378 122 22 17 chr1 8107086 8107316 -234557037 - AluJb SINE Alu 0 312 82 2104 131 0 0 chr1 8107417 8107715 -234556638 + AluSx SINE Alu 1 298 -14 454 183 0 24 chr1 8107715 8107791 -234556562 - FLAM_A SINE Alu -24 118 45 626 286 57 40 chr1 8108011 8108259 -234556094 - MIR SINE MIR -3 259 8 2789 199 46 33 chr1 8108352 8108934 -234555419 - MLT1E LTR MaLR -3 590 1 221 0 0 33 chr1 8109802 8109832 -234554521 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1058 162 5 79 chr1 8110371 8110532 -234553821 - MER20 DNA MER1_type -4 215 72 2220 119 0 0 chr1 8110532 8110835 -234553518 - AluSx SINE Alu -9 303 1 1058 162 5 79 chr1 8110835 8110889 -234553464 - MER20 DNA MER1_type -147 72 16 907 83 15 8 chr1 8111594 8111726 -234552627 - AluSp SINE Alu -180 133 1 255 125 0 0 chr1 8113133 8113173 -234551180 + (T)n Simple_repeat Simple_repeat 1 40 0 638 281 50 15 chr1 8114158 8114241 -234550112 - MLT1L LTR MaLR 0 615 536 1596 170 23 13 chr1 8114241 8114366 -234549987 + AluJo SINE Alu 1 123 -189 183 42 0 0 chr1 8114366 8114390 -234549963 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 8114390 8114564 -234549789 + AluJo SINE Alu 123 303 -9 638 281 50 15 chr1 8114564 8114679 -234549674 - MLT1L LTR MaLR -79 536 410 476 238 57 0 chr1 8114719 8114841 -234549512 - MLT1L LTR MaLR -324 291 163 259 284 12 12 chr1 8114884 8114965 -234549388 - MLT1L LTR MaLR -534 81 1 355 358 0 0 chr1 8115036 8115131 -234549222 + L1MC4 LINE L1 6614 6708 -1334 2114 112 3 3 chr1 8115152 8115448 -234548905 + AluSq SINE Alu 3 298 -15 180 77 0 0 chr1 8115565 8115591 -234548762 + (T)n Simple_repeat Simple_repeat 1 26 0 2098 97 16 10 chr1 8116117 8116426 -234547927 - AluSx SINE Alu -1 311 1 1971 115 0 17 chr1 8116667 8116995 -234547358 - AluSq SINE Alu 0 323 1 1362 179 80 7 chr1 8116997 8117271 -234547082 - AluJb SINE Alu -18 294 1 1988 147 0 6 chr1 8118451 8118765 -234545588 - AluSx SINE Alu 0 312 1 363 169 0 0 chr1 8120185 8120244 -234544109 - AluJ/FLAM SINE Alu -233 69 11 885 137 82 0 chr1 8120250 8120396 -234543957 - AluJo/FRAM SINE Alu -11 301 144 2196 102 14 0 chr1 8320668 8320951 -234343402 + AluSp SINE Alu 3 289 -24 316 182 0 4 chr1 8322107 8322177 -234342176 + FRAM/FAM SINE Alu 1 52 -123 912 126 0 0 chr1 8322227 8322354 -234341999 - FLAM_C SINE Alu -16 127 1 1097 174 0 0 chr1 8322420 8322598 -234341755 - FRAM SINE Alu -1 175 1 650 310 92 38 chr1 8322736 8323027 -234341326 - MARNA DNA Mariner -59 527 253 2220 98 10 26 chr1 8323027 8323333 -234341020 - AluSg SINE Alu -9 301 1 2402 104 3 0 chr1 8323335 8323644 -234340709 - AluSq SINE Alu -3 310 1 650 310 92 38 chr1 8323644 8323720 -234340633 - MARNA DNA Mariner -333 253 137 2119 125 0 0 chr1 8323956 8324265 -234340088 + AluSg SINE Alu 1 309 0 1659 95 151 0 chr1 8325103 8325355 -234338998 + AluSg SINE Alu 1 290 -20 2182 127 3 0 chr1 8325365 8325664 -234338689 + AluSp SINE Alu 1 300 -13 2232 131 0 0 chr1 8325664 8325962 -234338391 + AluSg SINE Alu 1 298 -12 2278 116 0 3 chr1 8325971 8326273 -234338080 + AluSx SINE Alu 1 301 -11 1743 146 0 4 chr1 8326272 8326532 -234337821 + AluSx SINE Alu 50 308 -4 * 2194 112 3 37 chr1 8327060 8327263 -234337090 - AluSq SINE Alu -2 311 122 2539 68 3 7 chr1 8327263 8327573 -234336780 - AluSx SINE Alu -3 309 1 2194 112 3 37 chr1 8327573 8327691 -234336662 - AluSq SINE Alu -191 122 1 2324 102 0 0 chr1 8327750 8328043 -234336310 - AluSc SINE Alu -16 293 1 467 225 0 115 chr1 8328122 8328185 -234336168 + HsTC2 DNA Tc2 1558 1627 -271 1694 175 28 3 chr1 8328185 8328470 -234335883 + AluJb SINE Alu 1 292 -20 467 225 0 115 chr1 8328470 8328588 -234335765 + HsTC2 DNA Tc2 1627 1718 -180 2461 94 0 0 chr1 8328588 8328896 -234335457 + AluSx SINE Alu 1 308 -4 1261 116 0 22 chr1 8328938 8328953 -234335400 + AluSc SINE Alu 120 134 -175 2386 98 3 0 chr1 8328953 8329250 -234335103 + AluSx SINE Alu 1 298 -14 1261 116 0 22 chr1 8329250 8329415 -234334938 + AluSc SINE Alu 134 296 -13 2137 110 10 7 chr1 8329417 8329707 -234334646 + AluY SINE Alu 3 293 -18 2350 110 0 3 chr1 8329855 8330165 -234334188 + AluSx SINE Alu 1 309 -3 2325 96 0 0 chr1 8330432 8330723 -234333630 + AluSc SINE Alu 5 295 -14 410 203 187 0 chr1 8330758 8330881 -234333472 + MLT1H LTR MaLR 35 180 -369 2346 81 17 3 chr1 8331332 8331627 -234332726 - AluY SINE Alu -12 299 1 339 272 55 40 chr1 8331633 8331905 -234332448 - HAL1 LINE L1 -5 2502 2227 1412 252 75 37 chr1 8331934 8332272 -234332081 - HAL1 LINE L1 -923 1584 1211 1900 123 4 0 chr1 8332272 8332532 -234331821 - AluSx SINE Alu -12 300 40 1412 252 75 37 chr1 8332532 8332809 -234331544 - HAL1 LINE L1 -1296 1211 946 246 296 14 0 chr1 8332881 8332952 -234331401 - HAL1 LINE L1 -1798 709 638 323 261 87 87 chr1 8332953 8333068 -234331285 + MIR SINE MIR 5 119 -143 1335 117 0 6 chr1 8333071 8333251 -234331102 - AluSg/x SINE Alu 0 312 134 1993 71 0 20 chr1 8333251 8333504 -234330849 - AluY SINE Alu -11 300 53 273 114 0 0 chr1 8333604 8333648 -234330705 - AluJ/FLAM SINE Alu -224 78 35 1169 154 5 41 chr1 8333656 8333877 -234330476 + AluJo SINE Alu 87 299 -13 1990 113 53 3 chr1 8333981 8334264 -234330089 + AluY SINE Alu 1 297 -14 2466 84 0 0 chr1 8334351 8334649 -234329704 + AluSc SINE Alu 1 298 -11 2167 131 3 6 chr1 8334705 8335017 -234329336 - AluSx SINE Alu -1 311 1 1530 178 65 7 chr1 8335037 8335312 -234329041 + AluJo SINE Alu 3 293 -19 2171 128 0 0 chr1 8335330 8335626 -234328727 + AluSx SINE Alu 1 296 -16 24 38 0 38 chr1 8335626 8335644 -234328709 + AT_rich Low_complexity Low_complexity 1 18 -33 2263 116 0 0 chr1 8335644 8335936 -234328417 + AluSx SINE Alu 1 292 -20 24 38 0 38 chr1 8335936 8335970 -234328383 + AT_rich Low_complexity Low_complexity 18 51 0 612 249 83 5 chr1 8336041 8336246 -234328107 + HAL1 LINE L1 1359 1579 -928 1992 128 0 43 chr1 8336255 8336560 -234327793 + AluSx SINE Alu 1 292 -20 284 244 37 24 chr1 8336665 8336747 -234327606 - HAL1 LINE L1 -767 1740 1658 267 266 195 0 chr1 8336740 8336853 -234327500 + HAL1 LINE L1 1678 1812 -695 * 1702 157 29 55 chr1 8337000 8337312 -234327041 + AluJb SINE Alu 2 305 -7 2478 69 0 3 chr1 8337382 8337685 -234326668 - AluY SINE Alu -9 302 1 208 158 26 0 chr1 8337734 8337772 -234326581 + L2 LINE L2 2720 2758 -556 285 226 97 0 chr1 8337873 8337935 -234326418 + MIR SINE MIR 20 87 -121 2265 97 7 3 chr1 8338113 8338411 -234325942 - AluSg SINE Alu -11 299 1 304 273 15 0 chr1 8338432 8338498 -234325855 + L1MC/D LINE L1 5709 5775 -2033 2026 145 0 0 chr1 8338588 8338896 -234325457 - AluSx SINE Alu 0 308 1 284 178 0 0 chr1 8338913 8338958 -234325395 + Alu SINE Alu 2 46 -255 343 143 86 0 chr1 8339852 8339922 -234324431 + MER103 DNA DNA 9 84 -82 2608 74 0 0 chr1 8340156 8340467 -234323886 - AluY SINE Alu 0 311 1 1296 148 106 68 chr1 8340666 8340742 -234323611 - Charlie1 DNA MER1_type -4 2757 2685 2004 131 13 45 chr1 8340742 8341056 -234323297 - AluSq SINE Alu -9 304 1 1296 148 106 68 chr1 8341056 8341177 -234323176 - Charlie1 DNA MER1_type -76 2685 2570 2421 103 0 0 chr1 8341177 8341479 -234322874 - AluSx SINE Alu -10 302 1 1296 148 106 68 chr1 8341479 8341678 -234322675 - Charlie1 DNA MER1_type -191 2570 2345 2209 107 13 0 chr1 8341922 8342221 -234322132 - AluSg SINE Alu -7 303 1 1691 170 47 0 chr1 8342221 8342498 -234321855 - AluJb SINE Alu -19 293 4 2517 57 0 7 chr1 8342682 8342983 -234321370 - AluSc SINE Alu -10 299 1 2240 124 3 0 chr1 8343244 8343543 -234320810 - AluSx SINE Alu -12 300 1 2128 136 7 10 chr1 8343941 8344250 -234320103 + AluJb SINE Alu 1 308 -4 292 282 0 0 chr1 8344271 8344342 -234320011 - MIR3 SINE MIR -14 194 124 307 349 77 26 chr1 8344649 8344844 -234319509 - L3 LINE CR1 -2 1575 1371 945 254 28 14 chr1 8344862 8345075 -234319278 + MIR SINE MIR 3 218 -44 671 139 130 83 chr1 8345092 8345208 -234319145 - L1M4 LINE L1 -2378 3768 3659 2340 88 0 3 chr1 8345208 8345504 -234318849 + AluSp SINE Alu 1 295 -18 671 139 130 83 chr1 8345504 8345603 -234318750 - L1M4 LINE L1 -2487 3659 3543 691 208 87 63 chr1 8346608 8346815 -234317538 - L2 LINE L2 0 3313 3102 2385 55 41 3 chr1 8346833 8347125 -234317228 + AluY SINE Alu 1 303 -8 2250 97 0 0 chr1 8347136 8347415 -234316938 + AluSg SINE Alu 1 279 -31 946 266 38 26 chr1 8347444 8347711 -234316642 - L2 LINE L2 -495 2819 2550 2267 106 0 3 chr1 8348020 8348323 -234316030 + AluSx SINE Alu 1 302 -10 217 318 45 0 chr1 8348376 8348442 -234315911 - MIR3 SINE MIR -11 197 129 240 385 9 0 chr1 8348551 8348660 -234315693 + L2 LINE L2 3194 3303 -10 2400 99 0 3 chr1 8348912 8349216 -234315137 - AluSq SINE Alu -10 303 1 827 285 61 4 chr1 8349219 8349465 -234314888 + MIR SINE MIR 3 262 0 307 247 116 41 chr1 8349459 8349605 -234314748 + L2 LINE L2 3155 3311 -2 * 535 268 160 72 chr1 8349587 8349762 -234314591 - L2 LINE L2 -4 3309 3151 2446 56 0 26 chr1 8349762 8350065 -234314288 + AluY SINE Alu 1 295 -16 535 268 160 72 chr1 8350065 8350289 -234314064 - L2 LINE L2 -162 3151 2875 667 269 71 10 chr1 8351422 8351619 -234312734 - MIR SINE MIR -52 210 2 406 214 60 34 chr1 8351720 8351837 -234312516 + MIR SINE MIR 50 169 -93 292 388 0 0 chr1 8352319 8352422 -234311931 - L2 LINE L2 0 3272 3170 2470 86 0 0 chr1 8352422 8352725 -234311628 + AluY SINE Alu 1 303 -8 1545 161 31 23 chr1 8355106 8355366 -234308987 - AluY SINE Alu -49 262 1 2142 121 17 0 chr1 8355399 8355696 -234308657 - AluSx SINE Alu -10 302 1 258 32 0 0 chr1 8355697 8355728 -234308625 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2093 112 4 4 chr1 8355728 8356006 -234308347 - AluSc SINE Alu -28 281 4 2445 88 0 0 chr1 8356009 8356314 -234308039 - AluSx SINE Alu -7 305 1 333 182 76 0 chr1 8356353 8356419 -234307934 - MER2 DNA MER2_type -1 344 274 522 110 0 0 chr1 8356419 8356501 -234307852 + L1PB1 LINE L1 6069 6150 -1 21 82 0 0 chr1 8356501 8356550 -234307803 + AT_rich Low_complexity Low_complexity 1 49 0 1268 135 19 5 chr1 8356600 8356807 -234307546 - MER2 DNA MER2_type -135 210 1 516 277 55 25 chr1 8356810 8356939 -234307414 - L1M4 LINE L1 -812 5334 5195 2186 128 0 0 chr1 8356939 8357244 -234307109 - AluSc SINE Alu -4 305 1 516 277 55 25 chr1 8357244 8357316 -234307037 - L1M4 LINE L1 -951 5195 5127 2244 101 16 10 chr1 8357341 8357649 -234306704 - AluSg SINE Alu 0 310 1 1402 175 15 94 chr1 8357652 8357983 -234306370 - AluJo SINE Alu -7 305 1 2572 68 0 0 chr1 8358005 8358315 -234306038 - AluY SINE Alu -1 310 1 2145 103 3 29 chr1 8358318 8358495 -234305858 - AluSg SINE Alu -6 304 137 2354 108 0 0 chr1 8358495 8358801 -234305552 - AluSg SINE Alu -4 306 1 2145 103 3 29 chr1 8358801 8358935 -234305418 - AluSg SINE Alu -173 137 1 1072 103 0 0 chr1 8358935 8359071 -234305282 - AluSq/x SINE Alu -176 136 1 608 283 123 24 chr1 8359172 8359554 -234304799 + L1MC4 LINE L1 7356 7775 -267 1784 142 17 30 chr1 8359560 8359691 -234304662 + AluSx SINE Alu 1 132 -180 2305 88 3 10 chr1 8359691 8359987 -234304366 + AluSg SINE Alu 1 294 -16 2011 138 10 0 chr1 8359990 8360279 -234304074 + AluSx SINE Alu 1 292 -20 2410 90 3 0 chr1 8360281 8360582 -234303771 + AluY SINE Alu 1 302 -9 1784 142 17 30 chr1 8360582 8360739 -234303614 + AluSx SINE Alu 135 292 -20 1519 168 0 0 chr1 8360739 8360965 -234303388 + AluJb SINE Alu 80 305 -7 1072 173 0 0 chr1 8360967 8361140 -234303213 + AluJb SINE Alu 136 308 -4 632 252 53 68 chr1 8361150 8361416 -234302937 + L1MC4 LINE L1 7781 8042 0 1136 129 12 12 chr1 8362876 8363047 -234301306 - AluJo/FRAM SINE Alu -9 303 133 2589 50 0 0 chr1 8363048 8363345 -234301008 - AluY SINE Alu -12 299 3 346 161 0 0 chr1 8363383 8363439 -234300914 + AluS SINE Alu 2 57 -245 1291 123 29 84 chr1 8363667 8363846 -234300507 + MLT1B LTR MaLR 4 211 -256 2478 77 3 0 chr1 8363846 8364145 -234300208 + AluY SINE Alu 2 301 -10 1291 123 29 84 chr1 8364145 8364276 -234300077 + MLT1B LTR MaLR 211 348 -119 649 142 11 40 chr1 8364345 8364521 -234299832 + GA-rich Low_complexity Low_complexity 2 172 0 2111 135 0 19 chr1 8364528 8364846 -234299507 + AluSx SINE Alu 1 312 0 2470 77 0 6 chr1 8364851 8365164 -234299189 + AluY SINE Alu 1 311 0 339 129 65 0 chr1 8365189 8365251 -234299102 - AluJo SINE Alu 0 302 237 924 181 139 0 chr1 8365252 8365418 -234298935 - AluJo SINE Alu -123 189 1 689 175 0 0 chr1 8365420 8365534 -234298819 + MLT1B LTR MaLR 275 388 -2 313 251 174 49 chr1 8365949 8365985 -234298368 - MIR SINE MIR -63 145 115 2087 148 0 3 chr1 8365985 8366282 -234298071 - AluJo SINE Alu -16 296 1 313 251 174 49 chr1 8366282 8366408 -234297945 - MIR SINE MIR -93 115 14 608 103 0 41 chr1 8366460 8366557 -234297796 + AluS SINE Alu 1 93 -220 871 255 157 40 chr1 8367128 8367328 -234297025 - L2 LINE L2 0 3313 3138 2036 109 0 4 chr1 8367328 8367595 -234296758 + AluSx SINE Alu 1 266 -46 871 255 157 40 chr1 8367595 8367841 -234296512 - L2 LINE L2 -175 3138 2815 695 213 18 7 chr1 8368090 8368368 -234295985 - MLT1I LTR MaLR -7 402 1 736 112 32 8 chr1 8370246 8370371 -234293982 - AluY SINE Alu -171 140 13 1894 173 0 0 chr1 8370625 8370944 -234293409 + AluJb SINE Alu 1 300 -12 2127 143 0 0 chr1 8371295 8371589 -234292764 - AluSx SINE Alu -14 298 5 2327 114 0 0 chr1 8372010 8372309 -234292044 + AluSx SINE Alu 2 300 -12 2200 109 0 56 chr1 8372644 8372782 -234291571 + AluSx SINE Alu 1 145 -167 207 100 0 0 chr1 8372782 8372812 -234291541 + (TA)n Simple_repeat Simple_repeat 1 30 0 2200 109 0 56 chr1 8372812 8372993 -234291360 + AluSx SINE Alu 145 302 -10 660 157 0 8 chr1 8373112 8373233 -234291120 - AluSg/x SINE Alu -5 305 186 210 71 0 0 chr1 8373560 8373588 -234290765 + (TCC)n Simple_repeat Simple_repeat 3 30 0 306 326 123 9 chr1 8374141 8374368 -234289985 - MIR SINE MIR 0 262 10 1742 98 0 0 chr1 8374647 8374861 -234289492 + AluSq SINE Alu 88 301 -12 258 116 0 0 chr1 8375493 8375536 -234288817 + (GA)n Simple_repeat Simple_repeat 2 44 0 469 244 85 18 chr1 8376368 8376532 -234287821 + L3 LINE CR1 1337 1511 -66 261 234 0 16 chr1 8379592 8379656 -234284697 + (GGGTG)n Simple_repeat Simple_repeat 1 63 0 2342 115 0 6 chr1 8380374 8380686 -234283667 - AluSg SINE Alu 0 310 1 5374 206 83 27 chr1 8382822 8383106 -234281247 + L1M4 LINE L1 3657 3923 -2223 2313 88 27 3 chr1 8383106 8383401 -234280952 + AluSq SINE Alu 1 302 -11 5374 206 83 27 chr1 8383401 8383697 -234280656 + L1M4 LINE L1 3923 4201 -1945 2098 150 0 0 chr1 8383697 8383991 -234280362 - AluJb SINE Alu -18 294 1 5374 206 83 27 chr1 8383991 8384741 -234279612 + L1M4 LINE L1 4201 5089 -1057 1569 175 6 48 chr1 8384741 8384923 -234279430 - AluJo SINE Alu -9 303 138 1957 122 0 7 chr1 8384923 8385193 -234279160 + AluSx SINE Alu 45 312 0 1569 175 6 48 chr1 8385193 8385325 -234279028 - AluJo SINE Alu -174 138 2 5374 206 83 27 chr1 8385325 8385526 -234278827 + L1M4 LINE L1 5089 5277 -869 1424 90 0 5 chr1 8385526 8385714 -234278639 - AluSg/x SINE Alu -10 300 114 1407 167 30 15 chr1 8385814 8386110 -234278243 + L1MB7 LINE L1 5742 6052 -112 2145 103 0 23 chr1 8386122 8386451 -234277902 + AluY SINE Alu 1 311 0 654 162 80 32 chr1 8386468 8386482 -234277871 + L1M4 LINE L1 5411 5423 -745 2396 78 0 36 chr1 8386482 8386791 -234277562 + AluY SINE Alu 1 298 -13 2056 110 0 38 chr1 8386791 8387110 -234277243 + AluSx SINE Alu 1 308 0 654 162 80 32 chr1 8387110 8387247 -234277106 + L1M4 LINE L1 5422 5566 -602 1210 305 106 24 chr1 8387247 8388065 -234276288 + L2 LINE L2 2375 3278 -35 269 240 211 10 chr1 8388072 8388176 -234276177 - MIR SINE MIR -62 146 22 2158 104 0 77 chr1 8389592 8389929 -234274424 + AluSx SINE Alu 1 311 -1 281 214 29 68 chr1 8391064 8391167 -234273186 + MIR SINE MIR 45 143 -65 777 128 8 0 chr1 8391550 8391667 -234272686 - FLAM_C SINE Alu -15 118 1 414 280 63 46 chr1 8391679 8391854 -234272499 - MER5A DNA MER1_type -6 183 6 2523 58 0 0 chr1 8393620 8393912 -234270441 - AluY SINE Alu -19 292 1 2290 121 0 0 chr1 8394231 8394529 -234269824 + AluSx SINE Alu 1 298 -14 2572 70 0 13 chr1 8394603 8394918 -234269435 + AluY SINE Alu 1 311 0 215 326 19 74 chr1 8395611 8395696 -234268657 - L2 LINE L2 -506 2808 2720 2077 113 49 0 chr1 8395696 8395980 -234268373 + AluSx SINE Alu 1 298 -14 215 326 19 74 chr1 8395980 8396164 -234268189 - L2 LINE L2 -594 2720 2554 2031 148 0 26 chr1 8397906 8398216 -234266137 - AluSx SINE Alu -9 303 2 2077 131 0 25 chr1 8398267 8398581 -234265772 - AluJo SINE Alu -6 306 1 349 120 0 0 chr1 8398645 8398720 -234265633 - AluSp SINE Alu 0 308 234 1187 141 11 5 chr1 8398720 8398905 -234265448 - AluSp SINE Alu -127 186 1 1137 124 0 30 chr1 8398907 8399098 -234265255 - AluSg/x SINE Alu 0 304 119 2305 99 0 34 chr1 8399110 8399432 -234264921 - AluY SINE Alu 0 311 1 1561 207 17 15 chr1 8399435 8399899 -234264454 - L1M4 LINE L1 -2803 3343 2879 2364 96 0 3 chr1 8399906 8400208 -234264145 - AluSc SINE Alu -7 302 2 2536 66 0 0 chr1 8400209 8400510 -234263843 - AluY SINE Alu -10 301 1 1435 141 52 83 chr1 8400510 8400675 -234263678 - L1MCa LINE L1 -6090 336 184 1736 174 3 10 chr1 8400675 8400973 -234263380 - AluJb SINE Alu -16 296 1 1435 141 52 83 chr1 8400973 8401134 -234263219 - L1MCa LINE L1 -6242 184 20 2436 171 42 40 chr1 8401143 8401669 -234262684 - L1MB5 LINE L1 -41 6133 5607 362 149 0 27 chr1 8401686 8401760 -234262593 + (CCCCCT)n Simple_repeat Simple_repeat 6 77 0 1787 102 0 17 chr1 8401774 8402010 -234262343 - AluSx SINE Alu -32 280 49 268 207 115 23 chr1 8402010 8402086 -234262267 - L1MB5 LINE L1 -553 5621 5535 194 286 0 62 chr1 8402127 8402212 -234262141 - L3 LINE CR1 -352 1225 1147 1619 177 13 33 chr1 8402212 8402517 -234261836 - AluJo SINE Alu -13 299 1 194 286 0 62 chr1 8402517 8402543 -234261810 - L3 LINE CR1 -430 1147 1121 373 200 32 42 chr1 8402572 8402667 -234261686 - FLAM_A SINE Alu -4 129 36 458 338 143 44 chr1 8402797 8403164 -234261189 - L3 LINE CR1 -635 942 520 2480 55 3 29 chr1 8403164 8403474 -234260879 - AluY SINE Alu -9 302 1 458 338 143 44 chr1 8403474 8403559 -234260794 - L3 LINE CR1 -1057 520 445 2140 114 20 3 chr1 8403579 8403885 -234260468 - AluSx SINE Alu -1 311 1 1814 143 7 36 chr1 8403890 8404197 -234260156 - AluJb SINE Alu -14 298 1 2480 81 0 0 chr1 8404403 8404701 -234259652 + AluSp SINE Alu 1 298 -15 2076 142 0 0 chr1 8405260 8405548 -234258805 + AluSx SINE Alu 1 288 -24 2373 94 0 3 chr1 8406556 8406853 -234257500 + AluSx SINE Alu 1 296 -16 213 65 0 0 chr1 8407646 8407677 -234256676 + (TTG)n Simple_repeat Simple_repeat 2 32 0 706 127 8 34 chr1 8407684 8407802 -234256551 - AluSg/x SINE Alu -28 282 168 247 235 26 52 chr1 8407810 8407925 -234256428 - AluSp SINE Alu -108 195 84 1736 148 25 21 chr1 8408240 8408523 -234255830 - AluJb SINE Alu -28 284 1 1431 229 23 12 chr1 8408857 8409202 -234255151 - L2 LINE L2 -562 2752 2404 255 271 0 2 chr1 8409202 8409262 -234255091 + AluSg/x SINE Alu 135 186 -116 * 502 137 0 0 chr1 8409259 8409332 -234255021 - 7SK RNA RNA 0 193 121 736 142 0 16 chr1 8409369 8409496 -234254857 - 7SK RNA RNA -68 125 1 904 158 0 0 chr1 8409496 8409629 -234254724 + FRAM SINE Alu 34 166 -10 548 222 23 34 chr1 8409638 8409814 -234254539 - L2 LINE L2 -928 2386 2213 1319 214 34 34 chr1 8409814 8410137 -234254216 - MLT1B LTR MaLR 0 390 68 1911 164 31 0 chr1 8410761 8411053 -234253300 + AluJb SINE Alu 1 301 -11 2120 112 20 3 chr1 8411102 8411396 -234252957 - AluSg SINE Alu -11 299 1 2118 127 7 0 chr1 8411540 8411863 -234252490 - AluSx SINE Alu 0 325 1 674 200 0 0 chr1 8412143 8412268 -234252085 + FRAM SINE Alu 9 133 -43 507 130 176 0 chr1 8412418 8412526 -234251827 - AluJo SINE Alu -178 134 8 2541 57 0 3 chr1 8412541 8412842 -234251511 - AluSg SINE Alu -10 300 1 21 36 0 0 chr1 8414534 8414562 -234249791 + AT_rich Low_complexity Low_complexity 1 28 0 2334 92 0 16 chr1 8414597 8414900 -234249453 + AluSx SINE Alu 1 298 -14 2506 68 3 0 chr1 8415017 8415313 -234249040 + AluSc SINE Alu 1 297 -12 2090 141 16 0 chr1 8415319 8415624 -234248729 + AluSx SINE Alu 1 310 -2 249 292 299 0 chr1 8415685 8415829 -234248524 - L2 LINE L2 -214 3058 2872 1019 66 8 0 chr1 8416193 8416314 -234248039 + AluY SINE Alu 2 123 -188 1906 49 0 13 chr1 8416330 8416555 -234247798 + AluY SINE Alu 1 222 -89 1822 180 0 0 chr1 8417477 8417766 -234246587 - AluSx SINE Alu -23 289 1 386 311 114 60 chr1 8417771 8417951 -234246402 + L1M4 LINE L1 4607 4776 -1370 1411 113 141 100 chr1 8417951 8418242 -234246111 + AluSg SINE Alu 1 303 -7 1854 148 58 0 chr1 8418242 8418519 -234245834 + AluSx SINE Alu 1 294 -18 386 311 114 60 chr1 8418519 8418932 -234245421 + L1M4 LINE L1 4775 5233 -913 636 129 11 0 chr1 8418945 8419038 -234245315 + AluJb SINE Alu 195 288 -24 1779 170 25 0 chr1 8419142 8419425 -234244928 + AluJb SINE Alu 1 290 -22 2000 147 0 19 chr1 8419731 8420043 -234244310 - AluJo SINE Alu -6 306 1 1784 124 84 7 chr1 8420046 8420188 -234244165 - AluSx SINE Alu -17 295 165 2471 76 3 0 chr1 8420188 8420491 -234243862 - AluY SINE Alu -7 304 1 1784 124 84 7 chr1 8420491 8420622 -234243731 - AluSx SINE Alu -147 165 1 1136 53 0 8 chr1 8420622 8420755 -234243598 - AluY SINE Alu -179 132 1 728 173 15 8 chr1 8420785 8420918 -234243435 + AluJo SINE Alu 3 136 -176 2355 101 3 0 chr1 8421459 8421756 -234242597 - AluSx SINE Alu -14 298 1 2209 123 7 0 chr1 8422146 8422456 -234241897 - AluSx SINE Alu 0 312 1 637 126 0 0 chr1 8422461 8422556 -234241797 - FLAM_C SINE Alu -14 129 35 696 252 31 78 chr1 8423271 8423352 -234241001 + MIR SINE MIR 7 90 -172 2129 130 7 10 chr1 8423352 8423659 -234240694 - AluSx SINE Alu -6 306 1 696 252 31 78 chr1 8423659 8423670 -234240683 + MIR SINE MIR 90 100 -162 1670 189 19 3 chr1 8423670 8423977 -234240376 - AluJb SINE Alu 0 312 1 696 252 31 78 chr1 8423977 8424141 -234240212 + MIR SINE MIR 100 252 -10 216 97 0 0 chr1 8424286 8424317 -234240036 + (TA)n Simple_repeat Simple_repeat 2 32 0 2457 73 0 13 chr1 8424317 8424631 -234239722 - AluY SINE Alu -1 310 1 2595 75 0 0 chr1 8424892 8425200 -234239153 - AluSq SINE Alu -5 308 1 225 342 79 0 chr1 8426069 8426145 -234238208 + MIR SINE MIR 77 158 -104 2295 107 0 0 chr1 8431321 8431612 -234232741 + AluSx SINE Alu 1 291 -21 481 284 98 42 chr1 8431827 8432091 -234232262 + L2 LINE L2 3035 3313 0 2213 124 3 0 chr1 8432209 8432515 -234231838 - AluSx SINE Alu -5 307 1 877 175 0 0 chr1 8432579 8432722 -234231631 + FLAM_C SINE Alu 1 143 0 2668 44 0 25 chr1 8433659 8433975 -234230378 + AluY SINE Alu 1 308 -3 2460 100 0 0 chr1 8434126 8434435 -234229918 + AluSc SINE Alu 1 309 0 2067 147 0 10 chr1 8434443 8434749 -234229604 + AluJb SINE Alu 1 303 -9 2472 70 3 3 chr1 8435125 8435423 -234228930 + AluSp SINE Alu 1 298 -15 669 205 0 0 chr1 8435550 8435667 -234228686 - FLAM_C SINE Alu -25 118 2 2299 96 3 3 chr1 8435806 8436098 -234228255 + AluSp SINE Alu 1 292 -21 415 136 0 0 chr1 8436109 8436175 -234228178 + Alu SINE Alu 236 301 -11 3242 139 20 55 chr1 8436211 8436808 -234227545 - L1MB7 LINE L1 0 6184 5610 2258 103 3 0 chr1 8436808 8437098 -234227255 - AluSx SINE Alu -21 291 1 3242 139 20 55 chr1 8437098 8437154 -234227199 - L1MB7 LINE L1 -574 5610 5554 1773 165 38 3 chr1 8437832 8438123 -234226230 - AluJo SINE Alu -11 301 1 1553 187 0 15 chr1 8438361 8438623 -234225730 - AluJb SINE Alu -54 258 1 2358 92 0 10 chr1 8438628 8438933 -234225420 - AluY SINE Alu -9 302 1 425 147 27 0 chr1 8439142 8439217 -234225136 - MER45A DNA AcHobo 0 178 102 2028 161 0 3 chr1 8439224 8439535 -234224818 - AluSx SINE Alu -2 310 1 231 169 144 144 chr1 8439535 8439569 -234224784 - MER45A DNA AcHobo -60 118 85 2153 124 3 3 chr1 8439569 8439868 -234224485 - AluSx SINE Alu -13 299 1 2412 91 3 7 chr1 8439877 8440186 -234224167 - AluSp SINE Alu -5 308 1 231 169 144 144 chr1 8440186 8440259 -234224094 - MER45A DNA AcHobo -100 78 1 2264 119 0 0 chr1 8440593 8440895 -234223458 - AluY SINE Alu -9 302 1 2169 110 0 0 chr1 8441923 8442242 -234222111 - AluSx SINE Alu 0 312 13 2124 118 3 0 chr1 8442254 8442542 -234221811 - AluSx SINE Alu -13 299 11 222 37 0 0 chr1 8442546 8442573 -234221780 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 698 159 61 12 chr1 8442779 8442942 -234221411 + L1MB7 LINE L1 6004 6174 -10 689 167 9 0 chr1 8443018 8443132 -234221221 + AluJb SINE Alu 2 116 -196 2585 59 10 0 chr1 8443132 8443435 -234220918 - AluY SINE Alu -5 306 1 1855 96 65 55 chr1 8443451 8443595 -234220758 - AluSx SINE Alu -16 296 155 1833 100 0 41 chr1 8443595 8443864 -234220489 - AluSx SINE Alu -11 301 44 1855 96 65 55 chr1 8443864 8444012 -234220341 - AluSx SINE Alu -157 155 1 251 301 142 9 chr1 8444753 8444866 -234219487 + MIR SINE MIR 32 159 -103 2140 137 0 3 chr1 8444866 8445166 -234219187 - AluSx SINE Alu -13 299 1 294 282 168 24 chr1 8446155 8446364 -234217989 - MIR SINE MIR -12 250 12 285 197 127 0 chr1 8447331 8447402 -234216951 + MIR SINE MIR 93 172 -90 2472 70 3 3 chr1 8448277 8448575 -234215778 - AluSp SINE Alu -15 298 1 2058 148 0 10 chr1 8448951 8449256 -234215097 - AluJb SINE Alu -10 302 1 2355 109 3 0 chr1 8449264 8449575 -234214778 - AluSx SINE Alu 0 312 1 245 271 12 59 chr1 8450103 8450188 -234214165 + MIR3 SINE MIR 4 84 -124 533 229 70 75 chr1 8450253 8450369 -234213984 + MIR SINE MIR 46 161 -101 2260 79 11 4 chr1 8450369 8450648 -234213705 + AluSq SINE Alu 1 281 -32 216 0 0 0 chr1 8450651 8450675 -234213678 + (TAA)n Simple_repeat Simple_repeat 3 26 0 533 229 70 75 chr1 8450675 8450755 -234213598 + MIR SINE MIR 163 245 -17 2512 73 0 13 chr1 8450825 8451139 -234213214 + AluY SINE Alu 1 310 -1 2334 112 6 6 chr1 8451144 8451457 -234212896 + AluSp SINE Alu 1 313 0 2175 101 7 32 chr1 8451472 8451780 -234212573 + AluSx SINE Alu 5 304 -8 239 344 86 8 chr1 8451862 8451990 -234212363 - MIR SINE MIR -46 216 79 1868 158 0 24 chr1 8451990 8452287 -234212066 + AluJo SINE Alu 1 290 -22 2208 124 0 0 chr1 8452650 8452940 -234211413 - AluSx SINE Alu -22 290 1 582 250 29 0 chr1 8452947 8453087 -234211266 - MIR SINE MIR -105 157 14 420 219 187 0 chr1 8453432 8453555 -234210798 + MIR SINE MIR 57 202 -60 2287 125 3 0 chr1 8453555 8453860 -234210493 + AluSx SINE Alu 1 306 -6 1232 99 0 29 chr1 8455338 8455538 -234208815 + AluSg/x SINE Alu 127 310 0 654 162 80 32 chr1 8455555 8455569 -234208784 + L1M4 LINE L1 5411 5423 -745 2396 78 0 36 chr1 8455569 8455878 -234208475 + AluY SINE Alu 1 298 -13 2056 110 0 38 chr1 8455878 8456197 -234208156 + AluSx SINE Alu 1 308 0 654 162 80 32 chr1 8456197 8456334 -234208019 + L1M4 LINE L1 5422 5566 -602 1168 304 109 24 chr1 8456334 8457151 -234207202 + L2 LINE L2 2375 3278 -35 269 240 211 10 chr1 8457158 8457262 -234207091 - MIR SINE MIR -62 146 22 2167 104 0 74 chr1 8458677 8459014 -234205339 + AluSx SINE Alu 1 312 0 281 214 29 68 chr1 8460148 8460251 -234204102 + MIR SINE MIR 45 143 -65 766 137 8 0 chr1 8460634 8460751 -234203602 - FLAM_C SINE Alu -15 118 1 414 280 63 46 chr1 8460763 8460938 -234203415 - MER5A DNA MER1_type -6 183 6 2515 58 0 0 chr1 8462703 8462995 -234201358 - AluY SINE Alu -19 292 1 2290 121 0 0 chr1 8463314 8463612 -234200741 + AluSx SINE Alu 1 298 -14 2572 70 0 13 chr1 8463686 8464001 -234200352 + AluY SINE Alu 1 311 0 215 326 19 74 chr1 8464693 8464778 -234199575 - L2 LINE L2 -506 2808 2720 2077 113 49 0 chr1 8464778 8465062 -234199291 + AluSx SINE Alu 1 298 -14 215 326 19 74 chr1 8465062 8465246 -234199107 - L2 LINE L2 -594 2720 2554 2031 148 0 26 chr1 8466990 8467300 -234197053 - AluSx SINE Alu -9 303 2 2077 131 0 25 chr1 8467351 8467665 -234196688 - AluJo SINE Alu -6 306 1 349 120 0 0 chr1 8467729 8467804 -234196549 - AluSx SINE Alu 0 308 234 1362 140 0 0 chr1 8467804 8467990 -234196363 - AluSx SINE Alu -126 186 1 225 342 79 0 chr1 8468858 8468934 -234195419 + MIR SINE MIR 77 158 -104 343 275 167 28 chr1 8472020 8472108 -234192245 + L2 LINE L2 2607 2681 -633 1681 139 0 16 chr1 8472108 8472366 -234191987 - AluJo SINE Alu -21 291 38 343 275 167 28 chr1 8472366 8472601 -234191752 + L2 LINE L2 2681 2975 -339 1501 174 34 19 chr1 8472652 8472916 -234191437 - AluJo SINE Alu -41 271 4 2151 135 3 3 chr1 8474699 8475011 -234189342 + AluSx SINE Alu 1 312 0 438 20 0 0 chr1 8475206 8475257 -234189096 + (CA)n Simple_repeat Simple_repeat 2 52 0 2307 92 0 3 chr1 8477283 8477575 -234186778 + AluSg SINE Alu 2 292 -18 24 0 0 0 chr1 8478270 8478294 -234186059 + AT_rich Low_complexity Low_complexity 1 24 0 5210 65 7 7 chr1 8478332 8479036 -234185317 - L1PA8 LINE L1 -3 6169 5466 210 197 0 0 chr1 8479058 8479103 -234185250 - MIR SINE MIR -52 156 111 255 316 68 8 chr1 8479156 8479273 -234185080 + MIR3 SINE MIR 45 168 -40 666 167 78 111 chr1 8479302 8479402 -234184951 + MER45A DNA AcHobo 2 104 -1477 1732 180 42 0 chr1 8479402 8479691 -234184662 - AluJo SINE Alu -11 301 1 2445 87 3 3 chr1 8479697 8480006 -234184347 - AluSq SINE Alu -4 309 1 666 167 78 111 chr1 8480006 8480078 -234184275 + MER45A DNA AcHobo 109 175 -3 224 279 154 22 chr1 8480604 8480740 -234183613 - L2 LINE L2 -9 3263 3110 207 289 18 53 chr1 8482295 8482409 -234181944 + G-rich Low_complexity Low_complexity 2 111 0 400 298 183 30 chr1 8483356 8483695 -234180658 - L2 LINE L2 -579 2735 2345 394 206 84 38 chr1 8483672 8483803 -234180550 + MIR SINE MIR 71 207 -55 * 1421 161 5 0 chr1 8483814 8484025 -234180328 + AluJb SINE Alu 87 298 -14 2158 107 41 0 chr1 8484027 8484318 -234180035 + AluSp SINE Alu 1 303 -10 231 227 0 0 chr1 8484333 8484377 -234179976 + MIR SINE MIR 218 261 -1 758 211 47 26 chr1 8484635 8484825 -234179528 - MER20 DNA MER1_type -25 194 1 202 304 157 44 chr1 8484854 8485065 -234179288 - MIR3 SINE MIR -24 238 1 522 254 71 3 chr1 8485581 8485750 -234178603 - MIR SINE MIR -63 145 13 2186 106 41 0 chr1 8485800 8486092 -234178261 + AluSc SINE Alu 1 304 -5 390 149 14 14 chr1 8486200 8486274 -234178079 - AluSg/x SINE Alu -12 290 217 497 213 39 8 chr1 8486405 8486532 -234177821 - AluSq/x SINE Alu -181 131 1 859 107 47 54 chr1 8486555 8486704 -234177649 + AluJb SINE Alu 1 148 -164 1916 66 125 15 chr1 8486704 8486976 -234177377 + AluSg SINE Alu 1 302 -8 473 171 152 0 chr1 8487670 8487775 -234176578 + MER20 DNA MER1_type 3 123 -96 231 272 168 8 chr1 8487866 8487991 -234176362 + L2 LINE L2 2908 3052 -220 676 207 0 0 chr1 8490065 8490186 -234174167 + AluJo/FLAM SINE Alu 2 122 -190 1143 114 0 45 chr1 8490186 8490362 -234173991 - AluSg/x SINE Alu 0 310 143 1929 178 0 0 chr1 8490479 8490788 -234173565 - AluSx SINE Alu -3 309 1 386 311 114 60 chr1 8490793 8490973 -234173380 + L1M4 LINE L1 4607 4776 -1370 1401 114 137 107 chr1 8490973 8491272 -234173081 + AluSg SINE Alu 1 308 -2 1854 148 58 0 chr1 8491272 8491549 -234172804 + AluSx SINE Alu 1 294 -18 386 311 114 60 chr1 8491549 8491962 -234172391 + L1M4 LINE L1 4775 5233 -913 636 129 11 0 chr1 8491975 8492068 -234172285 + AluJb SINE Alu 195 288 -24 1779 170 25 0 chr1 8492172 8492455 -234171898 + AluJb SINE Alu 1 290 -22 2026 148 0 16 chr1 8492761 8493071 -234171282 - AluJo SINE Alu -7 305 1 1762 128 84 7 chr1 8493074 8493216 -234171137 - AluSx SINE Alu -17 295 165 2471 76 3 0 chr1 8493216 8493519 -234170834 - AluY SINE Alu -7 304 1 1762 128 84 7 chr1 8493519 8493650 -234170703 - AluSx SINE Alu -147 165 1 1136 53 0 8 chr1 8493650 8493783 -234170570 - AluY SINE Alu -179 132 1 728 173 15 8 chr1 8493813 8493946 -234170407 + AluJo SINE Alu 3 136 -176 2346 101 3 0 chr1 8494487 8494783 -234169570 - AluSx SINE Alu -15 297 1 2192 126 7 0 chr1 8495173 8495483 -234168870 - AluSx SINE Alu 0 312 1 637 126 0 0 chr1 8495488 8495583 -234168770 - FLAM_C SINE Alu -14 129 35 718 249 31 74 chr1 8496298 8496379 -234167974 + MIR SINE MIR 7 90 -172 2158 127 7 10 chr1 8496379 8496686 -234167667 - AluSx SINE Alu -6 306 1 1813 187 10 3 chr1 8496696 8497006 -234167347 - AluJb SINE Alu 0 312 1 718 249 31 74 chr1 8497006 8497170 -234167183 + MIR SINE MIR 99 252 -10 231 114 0 0 chr1 8497315 8497350 -234167003 + (TA)n Simple_repeat Simple_repeat 1 35 0 2383 75 0 13 chr1 8497350 8497655 -234166698 - AluY SINE Alu -10 301 1 2463 60 0 80 chr1 8497916 8498252 -234166101 - AluSq SINE Alu -4 309 1 2186 108 0 20 chr1 8498264 8498569 -234165784 - AluSq SINE Alu -14 299 1 1228 163 8 67 chr1 8498980 8499060 -234165293 + AluJo SINE Alu 63 146 -166 2400 82 3 10 chr1 8499060 8499388 -234164965 + AluY SINE Alu 1 311 0 1228 163 8 67 chr1 8499388 8499547 -234164806 + AluJo SINE Alu 146 288 -24 2190 92 7 3 chr1 8499603 8499909 -234164444 + AluSq SINE Alu 1 307 0 507 241 152 7 chr1 8500644 8500789 -234163564 - MIR3 SINE MIR -11 197 32 2909 138 23 32 chr1 8501422 8501728 -234162625 - L1MB5 LINE L1 -3 6171 5871 2049 125 44 7 chr1 8501728 8502024 -234162329 - AluSq SINE Alu -4 309 3 2909 138 23 32 chr1 8502024 8502273 -234162080 - L1MB5 LINE L1 -303 5871 5621 2216 91 14 11 chr1 8502273 8502590 -234161763 - AluSp SINE Alu 0 318 1 2125 119 31 0 chr1 8502647 8502941 -234161412 + AluSg SINE Alu 1 303 -7 1692 168 31 3 chr1 8503020 8503306 -234161047 + AluSx SINE Alu 2 295 -17 417 271 43 15 chr1 8503450 8503623 -234160730 + MIR SINE MIR 42 213 -49 2451 64 27 0 chr1 8504434 8504729 -234159624 + AluY SINE Alu 1 303 -8 2254 100 4 0 chr1 8504736 8505016 -234159337 + AluSg SINE Alu 9 289 -21 23 0 0 0 chr1 8505183 8505206 -234159147 + AT_rich Low_complexity Low_complexity 1 23 0 2012 67 49 53 chr1 8505278 8505585 -234158768 - AluSp SINE Alu 0 308 3 276 170 0 19 chr1 8505910 8505963 -234158390 + AluJb SINE Alu 85 136 -166 2325 84 0 0 chr1 8505963 8506277 -234158076 + AluY SINE Alu 1 314 0 1079 76 0 0 chr1 8506432 8506563 -234157790 + AluSg1 SINE Alu 1 131 -178 2261 120 3 0 chr1 8506566 8506874 -234157479 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 8506894 8506916 -234157437 + AT_rich Low_complexity Low_complexity 1 22 0 668 139 0 0 chr1 8506989 8507097 -234157256 + FLAM_A SINE Alu 35 142 0 2000 127 48 3 chr1 8507106 8507397 -234156956 + AluSx SINE Alu 1 304 -8 2250 119 0 3 chr1 8508508 8508810 -234155543 + AluSx SINE Alu 1 301 -11 899 175 121 0 chr1 8508810 8508976 -234155377 + AluYb8 SINE Alu 1 186 -132 2228 119 3 7 chr1 8511000 8511302 -234153051 - AluSx SINE Alu -6 306 6 276 170 0 19 chr1 8511629 8511682 -234152671 + AluJb SINE Alu 85 136 -166 2439 93 0 0 chr1 8511682 8511992 -234152361 + AluY SINE Alu 1 310 -1 1079 76 0 0 chr1 8512150 8512281 -234152072 + AluSg1 SINE Alu 1 131 -178 2261 120 3 0 chr1 8512284 8512592 -234151761 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 8512612 8512634 -234151719 + AT_rich Low_complexity Low_complexity 1 22 0 668 139 0 0 chr1 8512707 8512815 -234151538 + FLAM_A SINE Alu 35 142 0 1985 131 48 3 chr1 8512826 8513117 -234151236 + AluSx SINE Alu 1 304 -8 2250 119 0 3 chr1 8514228 8514530 -234149823 + AluSx SINE Alu 1 301 -11 2074 115 0 36 chr1 8514530 8514644 -234149709 + AluSc SINE Alu 1 118 -191 2356 74 0 27 chr1 8514644 8514941 -234149412 + AluSc SINE Alu 1 289 -20 2074 115 0 36 chr1 8514941 8515131 -234149222 + AluSc SINE Alu 118 294 -15 1780 153 0 80 chr1 8515275 8515601 -234148752 + AluJb SINE Alu 1 300 -12 1752 148 3 68 chr1 8515985 8516115 -234148238 + AluSx SINE Alu 7 144 -168 2397 89 3 3 chr1 8516115 8516417 -234147936 + AluSx SINE Alu 1 302 -10 1752 148 3 68 chr1 8516417 8516610 -234147743 + AluSx SINE Alu 144 309 -3 972 154 49 6 chr1 8516610 8516772 -234147581 + AluSq SINE Alu 134 302 -11 2506 46 0 0 chr1 8516944 8517266 -234147087 - AluY SINE Alu 0 322 1 201 158 0 0 chr1 8517455 8517493 -234146860 + A-rich Low_complexity Low_complexity 1 38 0 242 127 0 175 chr1 8517493 8517556 -234146797 + MLT1H LTR MaLR 498 549 0 574 346 72 33 chr1 8517559 8518163 -234146190 + L2 LINE L2 2650 3270 -2 1045 175 0 0 chr1 8518524 8518690 -234145663 + AluJb SINE Alu 134 299 -13 2311 106 6 3 chr1 8518732 8519043 -234145310 + AluSx SINE Alu 1 312 0 327 146 0 0 chr1 8519427 8519482 -234144871 + (TC)n Simple_repeat Simple_repeat 2 56 0 2183 90 11 4 chr1 8519979 8520281 -234144072 - AluSg SINE Alu 0 304 1 29 0 0 0 chr1 8520283 8520312 -234144041 + AT_rich Low_complexity Low_complexity 1 29 0 1325 134 15 0 chr1 8520332 8520534 -234143819 - AluSg/x SINE Alu -3 309 105 1243 138 5 5 chr1 8520640 8520829 -234143524 + AluSg/x SINE Alu 112 300 -12 1355 191 7 28 chr1 8521870 8521988 -234142365 + AluJb SINE Alu 21 140 -172 2201 120 0 13 chr1 8521988 8522288 -234142065 + AluSx SINE Alu 1 296 -16 1355 191 7 28 chr1 8522288 8522452 -234141901 + AluJb SINE Alu 140 297 -15 2347 109 6 3 chr1 8522554 8522865 -234141488 + AluSx SINE Alu 1 312 0 2197 113 3 3 chr1 8522927 8523220 -234141133 + AluSx SINE Alu 7 299 -13 967 320 106 18 chr1 8523576 8524132 -234140221 - L2 LINE L2 -338 2976 2372 2263 62 11 0 chr1 8524137 8524413 -234139940 - AluSp SINE Alu -9 304 26 285 270 0 20 chr1 8525073 8525173 -234139180 + MLT1H LTR MaLR 368 465 -84 3503 85 4 2 chr1 8525424 8525895 -234138458 + LTR8 LTR ERV1 1 472 -219 8223 42 4 1 chr1 8525995 8527058 -234137295 - L1P LINE L1 -794 5352 4287 696 332 174 31 chr1 8527553 8528370 -234135983 + L3 LINE CR1 211 1144 -433 354 329 55 24 chr1 8528679 8528843 -234135510 - L1M LINE L1 -2385 5423 5255 335 264 127 10 chr1 8529065 8529262 -234135091 - L1M4 LINE L1 -1437 4709 4490 2028 128 0 24 chr1 8529752 8530048 -234134305 + AluSx SINE Alu 1 289 -23 253 191 191 0 chr1 8530876 8530960 -234133393 + MIR3 SINE MIR 108 207 -1 410 179 51 90 chr1 8533607 8533763 -234130590 - MER97b DNA MER1_type? -903 150 1 2230 121 52 100 chr1 8533929 8534391 -234129962 + Tigger3(Golem) DNA MER2_type 2577 3016 -13 266 203 34 0 chr1 8534401 8534460 -234129893 + LTR67 LTR ERVL 114 174 -383 1440 151 95 48 chr1 8534469 8534827 -234129526 - THE1C LTR MaLR 0 375 1 286 228 43 11 chr1 8535002 8535094 -234129259 + LTR67 LTR ERVL 439 533 -24 1694 117 117 0 chr1 8536386 8536516 -234127837 + AluSx SINE Alu 1 114 -198 1992 153 0 0 chr1 8536516 8536804 -234127549 + AluSg SINE Alu 9 296 -14 1694 117 117 0 chr1 8536804 8536922 -234127431 + AluSx SINE Alu 114 278 -34 660 195 17 0 chr1 8536926 8537100 -234127253 + GA-rich Low_complexity Low_complexity 4 180 0 273 167 0 21 chr1 8537228 8537276 -234127077 - Alu SINE Alu -252 48 2 2172 122 0 20 chr1 8537402 8537705 -234126648 - AluSx SINE Alu -15 297 1 1001 132 38 0 chr1 8538452 8538611 -234125742 - Tigger4(Zombi) DNA MER2_type -2566 165 1 2385 93 3 0 chr1 8538991 8539293 -234125060 - AluSp SINE Alu -10 303 1 2325 102 0 0 chr1 8540275 8540568 -234123785 + AluSx SINE Alu 1 293 -19 283 218 0 0 chr1 8540726 8540781 -234123572 + Tigger5 DNA MER2_type 3 57 -2266 822 168 0 0 chr1 8540848 8540973 -234123380 + FLAM_C SINE Alu 2 126 -7 2078 136 0 17 chr1 8540988 8541124 -234123229 + AluSx SINE Alu 1 138 -164 2348 94 0 16 chr1 8541124 8541261 -234123092 + AluSq SINE Alu 1 139 -174 2363 112 0 0 chr1 8541261 8541573 -234122780 + AluSq SINE Alu 1 312 -1 2348 94 0 16 chr1 8541573 8541744 -234122609 + AluSq SINE Alu 139 304 -9 2078 136 0 17 chr1 8541744 8541909 -234122444 + AluSx SINE Alu 138 297 -5 785 203 26 0 chr1 8541916 8542069 -234122284 + FRAM SINE Alu 5 161 -5 1173 208 32 70 chr1 8542544 8542857 -234121496 - AluSx SINE Alu 0 302 2 792 180 66 28 chr1 8543027 8543238 -234121115 - MER20 DNA MER1_type 0 219 1 1859 136 3 42 chr1 8543444 8543752 -234120601 + AluJb SINE Alu 1 296 -16 2463 88 0 19 chr1 8543910 8544228 -234120125 + AluSq SINE Alu 1 312 -1 257 343 59 29 chr1 8544787 8544889 -234119464 - L2 LINE L2 -42 3271 3167 2479 49 3 0 chr1 8544953 8545239 -234119114 - AluY SINE Alu -11 300 14 3317 145 35 88 chr1 8545269 8545524 -234118829 - L1MB3 LINE L1 0 6183 5916 1953 162 0 3 chr1 8545524 8545827 -234118526 + AluJb SINE Alu 1 302 -10 3317 145 35 88 chr1 8545827 8545840 -234118513 - L1MB3 LINE L1 -267 5916 5904 2123 128 17 0 chr1 8545840 8546128 -234118225 + AluSx SINE Alu 1 293 -19 2542 62 0 3 chr1 8546137 8546445 -234117908 + AluY SINE Alu 1 307 -4 3317 145 35 88 chr1 8546445 8546937 -234117416 - L1MB3 LINE L1 -287 5896 5453 348 266 66 49 chr1 8546985 8547211 -234117142 - L1MC5 LINE L1 -50 7911 7682 1964 162 3 3 chr1 8547248 8547556 -234116797 + AluJb SINE Alu 1 308 -4 225 188 47 47 chr1 8547556 8547632 -234116721 - L1MC5 LINE L1 -272 7689 7611 823 249 80 10 chr1 8547793 8548094 -234116259 - L1M4 LINE L1 -2096 4050 3729 2196 54 4 36 chr1 8548403 8548681 -234115672 + AluY SINE Alu 1 269 -42 531 138 0 129 chr1 8648841 8648886 -234015467 - L1MB5 LINE L1 0 6174 6125 243 0 0 0 chr1 8648886 8648913 -234015440 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2225 101 0 3 chr1 8648913 8649199 -234015154 - AluSq SINE Alu -28 285 1 531 138 0 129 chr1 8649199 8649268 -234015085 - L1MB5 LINE L1 -47 6127 6074 1898 125 0 83 chr1 8649300 8649612 -234014741 - AluSx SINE Alu -26 286 1 2021 143 3 3 chr1 8649968 8650275 -234014078 + AluSx SINE Alu 1 307 -5 1267 131 63 0 chr1 8651254 8651445 -234012908 + AluSg/x SINE Alu 93 295 -17 295 271 16 49 chr1 8651476 8651507 -234012846 + L1MC4 LINE L1 7924 7954 -88 2411 84 0 3 chr1 8651507 8651805 -234012548 + AluY SINE Alu 1 297 -14 295 271 16 49 chr1 8651805 8651895 -234012458 + L1MC4 LINE L1 7954 8041 -1 2210 120 0 16 chr1 8652246 8652563 -234011790 + AluSx SINE Alu 1 312 0 489 49 0 0 chr1 8653404 8653465 -234010888 - AluY SINE Alu -256 62 2 412 156 46 0 chr1 8653798 8653907 -234010446 + (TG)n Simple_repeat Simple_repeat 2 115 0 835 254 95 13 chr1 8654142 8654374 -234009979 + MLT1G1 LTR MaLR 2 252 -343 356 202 11 34 chr1 8654379 8654468 -234009885 + MLT1H LTR MaLR 463 549 0 849 257 108 33 chr1 8654497 8654975 -234009378 - L2 LINE L2 -19 3294 2779 802 168 0 126 chr1 8654980 8655170 -234009183 - FRAM SINE Alu 0 166 1 2046 114 13 25 chr1 8655193 8655508 -234008845 - AluSq SINE Alu -1 312 2 950 173 6 6 chr1 8655511 8655667 -234008686 - AluJb SINE Alu -22 290 135 2522 92 0 6 chr1 8655673 8655987 -234008366 - AluSx SINE Alu 0 312 1 1179 239 86 35 chr1 8655990 8656178 -234008175 - L2 LINE L2 -608 2706 2529 2293 101 0 0 chr1 8656178 8656474 -234007879 - AluSx SINE Alu -16 296 1 1179 239 86 35 chr1 8656474 8656741 -234007612 - L2 LINE L2 -785 2529 2228 184 236 67 34 chr1 8656981 8657022 -234007331 + MIR SINE MIR 159 197 -65 2615 54 0 0 chr1 8657022 8657319 -234007034 + AluY SINE Alu 1 297 -14 184 236 67 34 chr1 8657319 8657366 -234006987 + MIR SINE MIR 197 250 -12 2115 116 3 44 chr1 8657472 8657791 -234006562 + AluSx SINE Alu 1 306 -6 2256 104 0 0 chr1 8658589 8658878 -234005475 - AluSq SINE Alu -24 289 1 363 98 0 0 chr1 8658882 8658943 -234005410 + (TA)n Simple_repeat Simple_repeat 1 61 0 2300 79 10 3 chr1 8658943 8659235 -234005118 - AluSx SINE Alu -18 294 1 419 288 45 8 chr1 8662777 8662909 -234001444 + MIR SINE MIR 34 170 -92 240 167 71 0 chr1 8663160 8663202 -234001151 + MSTB LTR MaLR 382 426 0 3664 163 20 97 chr1 8663202 8663284 -234001069 + L1MB4 LINE L1 5221 5308 -872 2440 89 0 13 chr1 8663284 8663597 -234000756 + AluSc SINE Alu 1 309 0 3664 163 20 97 chr1 8663597 8664546 -233999807 + L1MB4 LINE L1 5308 6180 0 2510 45 0 0 chr1 8664670 8665001 -233999352 - AluY SINE Alu 0 311 1 2441 43 0 0 chr1 8665364 8665644 -233998709 - AluY SINE Alu -31 280 1 189 0 0 0 chr1 8665705 8665726 -233998627 + (A)n Simple_repeat Simple_repeat 1 21 0 2487 59 0 3 chr1 8666327 8666631 -233997722 - AluSq SINE Alu -10 303 1 2134 104 3 0 chr1 8666637 8666936 -233997417 - AluSg SINE Alu -10 300 1 2365 37 7 13 chr1 8667555 8667853 -233996500 - AluY SINE Alu -15 296 1 1650 159 97 0 chr1 8667955 8668245 -233996108 - MER7A DNA MER2_type -29 317 2 772 273 30 0 chr1 8668524 8668722 -233995631 + MIR SINE MIR 6 209 -53 207 100 0 0 chr1 8669138 8669168 -233995185 + (CTTA)n Simple_repeat Simple_repeat 2 31 0 2048 105 0 3 chr1 8669168 8669443 -233994910 - AluSg SINE Alu -27 283 8 749 169 70 7 chr1 8669443 8669585 -233994768 - AluJb SINE Alu -25 287 137 2011 116 20 0 chr1 8671024 8671317 -233993036 - AluSx SINE Alu -13 299 1 2425 68 0 0 chr1 8672130 8672438 -233991915 - AluY SINE Alu -2 309 2 2226 87 7 0 chr1 8673162 8673460 -233990893 + AluSc SINE Alu 2 301 -8 2166 74 11 0 chr1 8673575 8673892 -233990461 - AluSp SINE Alu 0 320 1 2055 119 0 14 chr1 8673909 8674067 -233990286 - AluSx SINE Alu -21 291 137 2153 109 0 10 chr1 8674067 8674078 -233990275 - AluSx SINE Alu -3 309 299 270 0 0 0 chr1 8674078 8674108 -233990245 + (TG)n Simple_repeat Simple_repeat 1 30 0 2153 109 0 10 chr1 8674108 8674408 -233989945 - AluSx SINE Alu -13 299 1 2055 119 0 14 chr1 8674408 8674544 -233989809 - AluSx SINE Alu -175 137 1 1587 268 199 11 chr1 8675109 8676011 -233988342 - L2 LINE L2 -55 3258 2179 293 302 19 99 chr1 8676011 8676227 -233988126 + MER20B DNA MER1_type 19 218 -1 266 222 81 30 chr1 8676228 8676327 -233988026 - L2 LINE L2 -1131 2183 2080 741 200 7 7 chr1 8676536 8676676 -233987677 + FRAM SINE Alu 1 140 -36 2061 124 0 22 chr1 8676676 8676991 -233987362 - AluSx SINE Alu -4 308 1 32 33 0 33 chr1 8677004 8677023 -233987330 + AT_rich Low_complexity Low_complexity 1 19 -40 1405 130 188 0 chr1 8677023 8677286 -233987067 + AluSx SINE Alu 1 308 0 32 33 0 33 chr1 8677286 8677326 -233987027 + AT_rich Low_complexity Low_complexity 19 59 0 2205 85 0 3 chr1 8677367 8677662 -233986691 - AluSc SINE Alu -15 294 1 726 143 0 0 chr1 8677676 8677781 -233986572 - U6 snRNA snRNA -1 106 2 811 179 21 74 chr1 8677782 8677972 -233986381 + AluJo SINE Alu 102 281 -31 32 43 0 0 chr1 8677972 8678018 -233986335 + AT_rich Low_complexity Low_complexity 1 46 0 1399 96 50 29 chr1 8678187 8678427 -233985926 + L1PA16 LINE L1 5922 6166 0 1846 120 0 18 chr1 8678444 8678579 -233985774 + AluSq SINE Alu 3 139 -174 2142 108 0 0 chr1 8678579 8678884 -233985469 + AluY SINE Alu 3 307 -4 1846 120 0 18 chr1 8678884 8679031 -233985322 + AluSq SINE Alu 139 280 -33 531 247 74 11 chr1 8679041 8679231 -233985122 - L1MEd LINE L1 -5016 1103 902 1942 143 7 0 chr1 8679231 8679545 -233984808 - AluSx SINE Alu 0 316 1 1949 122 37 3 chr1 8679556 8679852 -233984501 - AluSx SINE Alu -4 308 3 1960 133 3 0 chr1 8680233 8680527 -233983826 + AluSx SINE Alu 1 295 -17 784 124 0 0 chr1 8680987 8681100 -233983253 + AluSg/x SINE Alu 183 295 -17 1175 128 0 15 chr1 8681101 8681296 -233983057 + AluSq SINE Alu 122 313 0 1898 138 14 0 chr1 8682324 8682614 -233981739 - AluJo SINE Alu -18 294 1 2191 41 0 44 chr1 8683571 8683888 -233980465 - AluY SINE Alu 0 304 1 2305 93 0 3 chr1 8684241 8684552 -233979801 - AluSx SINE Alu -2 310 1 2101 90 4 0 chr1 8685480 8685777 -233978576 - AluSc SINE Alu 0 302 5 1420 159 10 68 chr1 8685782 8685958 -233978395 - AluJb SINE Alu -11 301 149 1941 123 3 20 chr1 8685958 8686250 -233978103 + AluSx SINE Alu 1 287 -25 1420 159 10 68 chr1 8686250 8686381 -233977972 - AluJb SINE Alu -163 149 12 1743 160 0 0 chr1 8686761 8687049 -233977304 + AluJb SINE Alu 23 310 -2 2065 113 0 22 chr1 8687227 8687538 -233976815 - AluSx SINE Alu -8 304 1 565 238 225 0 chr1 8687822 8687982 -233976371 + MIR SINE MIR 67 262 0 273 75 0 0 chr1 8688154 8688194 -233976159 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr1 8688193 8688214 -233976139 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 413 213 57 41 chr1 8688291 8688413 -233975940 - L1ME4a LINE L1 -22 6099 5976 1977 120 0 13 chr1 8688422 8688723 -233975630 - AluSq SINE Alu -16 297 1 230 272 140 0 chr1 8688730 8688844 -233975509 - L1ME4a LINE L1 -376 5745 5616 241 191 0 0 chr1 8688847 8688889 -233975464 + LTR50 LTR ERVL 7 48 -747 1408 126 39 9 chr1 8688906 8689005 -233975348 - AluSx SINE Alu -75 237 142 2076 99 0 14 chr1 8689005 8689185 -233975168 - AluSc SINE Alu 0 311 135 2188 86 7 0 chr1 8689185 8689477 -233974876 - AluSp SINE Alu -19 294 1 2076 99 0 14 chr1 8689477 8689611 -233974742 - AluSc SINE Alu -176 135 1 1408 126 39 9 chr1 8689611 8689740 -233974613 - AluSx SINE Alu -170 142 1 1710 156 54 0 chr1 8689760 8690055 -233974298 - AluJo SINE Alu -1 311 1 383 275 111 2 chr1 8690153 8690498 -233973855 + LTR50 LTR ERVL 108 654 -141 1993 120 3 3 chr1 8690499 8690799 -233973554 - AluSx SINE Alu -12 300 1 300 280 27 0 chr1 8690801 8690876 -233973477 - L1ME4a LINE L1 -506 5615 5539 1856 96 25 32 chr1 8691018 8691336 -233973017 - AluSg SINE Alu 0 318 3 189 138 0 0 chr1 8691337 8691366 -233972987 - MER5A DNA MER1_type -111 78 50 2469 44 0 7 chr1 8692138 8692435 -233971918 - AluY SINE Alu -16 295 1 2198 101 0 3 chr1 8692437 8692735 -233971618 - AluSc SINE Alu -12 297 1 401 127 0 0 chr1 8693102 8693157 -233971196 - AluSp/q SINE Alu -38 265 211 518 205 137 0 chr1 8693359 8693476 -233970877 - AluJo SINE Alu -178 134 2 1887 144 0 22 chr1 8694376 8694695 -233969658 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 8694747 8694770 -233969583 + (G)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr1 8695169 8695199 -233969154 + AT_rich Low_complexity Low_complexity 1 30 0 2002 106 0 17 chr1 8695592 8695885 -233968468 - AluSx SINE Alu -19 293 6 193 328 62 0 chr1 8696468 8696532 -233967821 + MIR SINE MIR 37 104 -158 2179 114 0 0 chr1 8696620 8696928 -233967425 - AluSx SINE Alu -3 309 2 2197 53 0 11 chr1 8697471 8697755 -233966598 - AluY SINE Alu -2 309 29 673 219 0 71 chr1 8698219 8698329 -233966024 + MER104 DNA Tc2 5 98 -1800 2119 117 3 3 chr1 8698329 8698637 -233965716 - AluSg SINE Alu -2 308 1 673 219 0 71 chr1 8698637 8698709 -233965644 + MER104 DNA Tc2 98 174 -6 347 229 53 61 chr1 8698852 8698983 -233965370 + L2 LINE L2 2934 3063 -250 1581 157 79 140 chr1 8699406 8699670 -233964683 + MLT1D LTR MaLR 1 280 -225 1750 154 13 0 chr1 8699670 8699968 -233964385 - AluSx SINE Alu -10 302 1 1590 148 19 11 chr1 8699968 8700238 -233964115 - AluSx SINE Alu -13 299 28 1581 157 79 140 chr1 8700238 8700412 -233963941 + MLT1D LTR MaLR 279 404 -101 2088 90 14 0 chr1 8700412 8700700 -233963653 - AluSx SINE Alu -20 292 1 1581 157 79 140 chr1 8700700 8700793 -233963560 + MLT1D LTR MaLR 404 501 -4 1722 183 109 10 chr1 8701514 8701948 -233962405 - MLT1D LTR MaLR -5 462 1 394 332 31 38 chr1 8701978 8702267 -233962086 + ERVL LTR ERVL 1025 1311 -4453 1004 269 86 15 chr1 8702521 8703057 -233961296 + L1M4 LINE L1 2512 3085 -3061 1989 90 29 42 chr1 8703070 8703381 -233960972 + AluSp SINE Alu 1 307 -6 1479 268 154 29 chr1 8703395 8703676 -233960677 + L1M4 LINE L1 3316 3560 -2586 2005 116 27 3 chr1 8703676 8703977 -233960376 - AluSx SINE Alu -4 308 1 1479 268 154 29 chr1 8703977 8704557 -233959796 + L1M4 LINE L1 3560 4285 -1861 2294 88 0 16 chr1 8704557 8704694 -233959659 + AluSx SINE Alu 1 139 -173 2140 102 7 0 chr1 8704694 8704989 -233959364 + AluY SINE Alu 1 297 -14 2294 88 0 16 chr1 8704989 8705168 -233959185 + AluSx SINE Alu 139 312 0 1432 279 59 36 chr1 8705211 8705734 -233958619 + ERVL LTR ERVL 4745 5279 -485 1826 131 3 7 chr1 8706139 8706453 -233957900 - AluSx SINE Alu 0 313 1 1541 161 16 48 chr1 8706589 8706900 -233957453 - AluJo SINE Alu -11 301 1 370 325 99 29 chr1 8706988 8707231 -233957122 - L1ME LINE L1 -316 5805 5546 2066 112 3 0 chr1 8707340 8707635 -233956718 - AluSg SINE Alu -14 296 1 1030 90 0 0 chr1 8707635 8707768 -233956585 - AluSg SINE Alu -177 133 1 790 154 32 0 chr1 8708149 8708272 -233956081 - AluSx SINE Alu -22 288 162 500 141 0 0 chr1 8708270 8708341 -233956012 - AluSx SINE Alu -240 72 2 * 242 288 14 14 chr1 8708565 8708638 -233955715 - MIR SINE MIR -65 143 71 1677 176 3 16 chr1 8708652 8708964 -233955389 - AluJo SINE Alu -2 310 3 953 114 0 0 chr1 8708969 8709101 -233955252 - FLAM_C SINE Alu -11 132 1 552 272 251 5 chr1 8709270 8709465 -233954888 - MIR SINE MIR 0 262 20 884 245 169 46 chr1 8709797 8710210 -233954143 + L2 LINE L2 2850 3313 0 1916 110 20 37 chr1 8710585 8710757 -233953596 - AluSc SINE Alu -14 295 129 1800 81 16 12 chr1 8710757 8711015 -233953338 - AluSq SINE Alu -10 303 45 1916 110 20 37 chr1 8711015 8711142 -233953211 - AluSc SINE Alu -180 129 1 2100 99 0 26 chr1 8711233 8711535 -233952818 - AluSx SINE Alu -18 294 1 2119 83 0 23 chr1 8712349 8712649 -233951704 + AluSx SINE Alu 1 293 -19 299 280 126 40 chr1 8712813 8712988 -233951365 - L2 LINE L2 -297 3016 2827 259 179 39 26 chr1 8712993 8713071 -233951282 + (TG)n Simple_repeat Simple_repeat 1 79 0 389 214 0 12 chr1 8713073 8713157 -233951196 - L2 LINE L2 -504 2810 2728 441 0 0 0 chr1 8713172 8713221 -233951132 + (TG)n Simple_repeat Simple_repeat 2 50 0 239 104 21 0 chr1 8713222 8713270 -233951083 + (GA)n Simple_repeat Simple_repeat 2 50 0 759 221 7 0 chr1 8713270 8713415 -233950938 - FRAM SINE Alu -30 146 1 751 92 151 0 chr1 8713745 8713864 -233950489 - L1PA14 LINE L1 -1 6160 6024 619 98 0 0 chr1 8714268 8714350 -233950003 + AluS SINE Alu 2 83 -230 1927 104 0 0 chr1 8714350 8714609 -233949744 + AluSx SINE Alu 36 294 -18 222 298 48 48 chr1 8715073 8715177 -233949176 + MIR SINE MIR 159 262 0 219 69 0 0 chr1 8716090 8716119 -233948234 + (CA)n Simple_repeat Simple_repeat 1 29 0 2379 112 0 0 chr1 8716388 8716701 -233947652 + AluSq SINE Alu 1 313 0 312 178 0 0 chr1 8716917 8716990 -233947363 + (CAT)n Simple_repeat Simple_repeat 2 74 0 1121 60 0 0 chr1 8717226 8717360 -233946993 + AluY SINE Alu 169 302 -9 904 124 0 29 chr1 8717373 8717510 -233946843 + AluJb SINE Alu 1 133 -179 693 202 54 24 chr1 8717548 8717716 -233946637 + MLT1D LTR MaLR 21 193 -312 835 154 8 0 chr1 8717723 8717846 -233946507 + AluJo/FLAM SINE Alu 1 124 -188 1723 173 3 23 chr1 8717848 8718148 -233946205 + AluJo SINE Alu 1 294 -18 2365 98 0 0 chr1 8718149 8718446 -233945907 + AluSx SINE Alu 1 297 -15 985 251 34 0 chr1 8718479 8718734 -233945619 + MLT1D LTR MaLR 217 505 0 272 267 69 40 chr1 8718734 8718835 -233945518 - MIR SINE MIR -151 111 8 2399 94 0 10 chr1 8718861 8719169 -233945184 + AluSq SINE Alu 1 305 -8 1911 86 100 4 chr1 8719172 8719441 -233944912 + AluSg SINE Alu 1 295 -15 2307 102 3 0 chr1 8720191 8720486 -233943867 - AluSq SINE Alu -17 296 1 1145 220 24 16 chr1 8720715 8720970 -233943383 + AluJo SINE Alu 54 310 -2 870 173 0 0 chr1 8721003 8721136 -233943217 - FLAM_A SINE Alu 0 133 1 2409 83 3 0 chr1 8721202 8721502 -233942851 - AluSx SINE Alu -11 301 1 1850 103 4 8 chr1 8722139 8722391 -233941962 + AluSx SINE Alu 47 297 -15 270 355 10 44 chr1 8722402 8722605 -233941748 - L2 LINE L2 -2697 617 422 365 234 103 61 chr1 8723040 8723352 -233941001 - L1MC5 LINE L1 -1 8041 7720 226 74 0 56 chr1 8723435 8723489 -233940864 - L1MC5 LINE L1 -282 7679 7629 2298 105 0 3 chr1 8724062 8724368 -233939985 + AluSx SINE Alu 1 305 -7 270 0 0 0 chr1 8724560 8724590 -233939763 + (T)n Simple_repeat Simple_repeat 1 30 0 1344 119 0 11 chr1 8724851 8725028 -233939325 - AluSx SINE Alu -137 175 1 1076 164 45 0 chr1 8726503 8726680 -233937673 - MER58A DNA MER1_type 0 224 40 480 136 344 24 chr1 8726981 8727106 -233937247 + FAM SINE Alu 3 167 -8 23 0 0 0 chr1 8727106 8727129 -233937224 + AT_rich Low_complexity Low_complexity 1 23 0 2536 215 40 30 chr1 8727272 8727344 -233937009 + L1ME1 LINE L1 5511 5581 -585 2378 99 0 10 chr1 8727344 8727657 -233936696 - AluSg SINE Alu 0 310 1 2536 215 40 30 chr1 8727657 8728227 -233936126 + L1ME1 LINE L1 5581 6160 -6 2175 98 11 3 chr1 8728475 8728760 -233935593 - AluSq SINE Alu -24 289 3 2232 108 0 7 chr1 8728770 8729067 -233935286 - AluSg SINE Alu -15 295 1 828 237 110 4 chr1 8729300 8729528 -233934825 - MIR SINE MIR 0 262 11 2088 125 0 31 chr1 8730972 8731292 -233933061 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr1 8731322 8731351 -233933002 + AT_rich Low_complexity Low_complexity 1 29 0 294 194 0 0 chr1 8732430 8732492 -233931861 - Alu SINE Alu 0 302 241 815 173 15 0 chr1 8732611 8732744 -233931609 + AluJb SINE Alu 148 282 -30 459 0 0 0 chr1 8732747 8732798 -233931555 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 317 208 0 0 chr1 8732808 8732868 -233931485 + AluJ/monomer SINE Alu 1 45 -263 981 174 6 0 chr1 8732877 8733038 -233931315 + AluJb SINE Alu 147 308 -4 2284 86 0 3 chr1 8733038 8733329 -233931024 + AluSg SINE Alu 1 290 -20 1140 277 20 48 chr1 8733691 8734149 -233930204 - L2 LINE L2 -43 3270 2826 1792 126 68 4 chr1 8734701 8734979 -233929374 - AluSx SINE Alu -3 309 14 299 239 137 58 chr1 8735278 8735483 -233928870 + L1ME LINE L1 5385 5605 -516 1524 177 11 14 chr1 8735550 8735833 -233928520 + AluJo SINE Alu 1 282 -30 702 165 0 9 chr1 8736252 8736361 -233927992 + Tigger3(Golem) DNA MER2_type 1 108 -2921 505 76 51 25 chr1 8736352 8736431 -233927922 + Tigger3(Golem) DNA MER2_type 2277 2357 -672 * 3623 126 34 56 chr1 8736552 8736563 -233927790 + Tigger3(Golem) DNA MER2_type 2386 2396 -632 2228 114 0 19 chr1 8736563 8736880 -233927473 + AluSx SINE Alu 1 311 -1 3623 126 34 56 chr1 8736880 8736945 -233927408 + Tigger3(Golem) DNA MER2_type 2396 2461 -567 2141 112 3 7 chr1 8736945 8737241 -233927112 - AluSq SINE Alu -12 301 7 3623 126 34 56 chr1 8737241 8737820 -233926533 + Tigger3(Golem) DNA MER2_type 2461 3027 -1 1518 142 0 124 chr1 8737881 8738030 -233926323 + AluJb SINE Alu 1 88 -224 2154 112 10 0 chr1 8738030 8738324 -233926029 + AluSx SINE Alu 1 297 -15 1518 142 0 124 chr1 8738324 8738504 -233925849 + AluJb SINE Alu 88 289 -23 21 0 0 0 chr1 8738575 8738596 -233925757 + AT_rich Low_complexity Low_complexity 1 21 0 182 319 83 14 chr1 8738970 8739042 -233925311 + L2 LINE L2 3127 3203 -69 189 175 0 0 chr1 8739500 8739540 -233924813 + (CA)n Simple_repeat Simple_repeat 2 41 0 1922 143 0 4 chr1 8739853 8740133 -233924220 + AluSx SINE Alu 1 279 -33 1091 93 0 70 chr1 8740246 8740418 -233923935 - AluSq SINE Alu -53 260 101 655 138 0 0 chr1 8740472 8740566 -233923787 + AluSg1 SINE Alu 2 95 -214 188 35 35 0 chr1 8740566 8740595 -233923758 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2238 110 0 0 chr1 8740687 8740979 -233923374 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr1 8740979 8741009 -233923344 + AT_rich Low_complexity Low_complexity 1 30 0 180 200 0 0 chr1 8741150 8741190 -233923163 + (TA)n Simple_repeat Simple_repeat 1 40 0 1480 171 23 63 chr1 8741590 8741889 -233922464 + AluJb SINE Alu 1 287 -25 241 286 16 0 chr1 8741965 8742028 -233922325 + L2 LINE L2 3234 3297 -16 2079 132 0 3 chr1 8742088 8742391 -233921962 - AluSx SINE Alu -10 302 1 2078 151 0 0 chr1 8742450 8742755 -233921598 + AluSx SINE Alu 1 305 -7 2585 59 0 3 chr1 8743018 8743324 -233921029 - AluY SINE Alu -6 305 1 690 296 37 21 chr1 8744202 8744264 -233920089 - MIR SINE MIR 0 262 203 1836 166 0 7 chr1 8744264 8744560 -233919793 - AluJo SINE Alu -18 294 1 690 296 37 21 chr1 8744560 8744740 -233919613 - MIR SINE MIR -59 203 16 2052 125 0 20 chr1 8744894 8745197 -233919156 + AluSq SINE Alu 1 297 -16 1808 172 0 3 chr1 8745207 8745536 -233918817 + AluJb SINE Alu 1 328 0 2220 102 0 0 chr1 8745579 8745884 -233918469 + AluSx SINE Alu 1 305 0 2157 119 3 0 chr1 8746094 8746388 -233917965 - AluSq SINE Alu -18 295 1 2045 120 10 13 chr1 8746652 8746960 -233917393 - AluSx SINE Alu -5 307 1 1276 214 56 4 chr1 8747016 8747283 -233917070 - AluJo SINE Alu -31 281 1 1203 139 0 0 chr1 8747327 8747499 -233916854 + AluSg/x SINE Alu 124 295 -15 876 163 0 0 chr1 8747732 8747861 -233916492 + FLAM_C SINE Alu 3 131 -12 1852 157 3 7 chr1 8747922 8748221 -233916132 - AluJo SINE Alu -14 298 1 432 245 185 0 chr1 8749001 8749152 -233915201 + L2 LINE L2 2449 2627 -687 1796 178 0 18 chr1 8749340 8749650 -233914703 + AluJb SINE Alu 1 305 0 1940 110 88 25 chr1 8749750 8750067 -233914286 + MER1B DNA MER1_type 1 337 0 197 217 0 67 chr1 8750159 8750219 -233914134 + MIR SINE MIR 120 175 -87 417 238 151 101 chr1 8750273 8750676 -233913677 - L2 LINE L2 0 3313 2784 1850 153 0 14 chr1 8750676 8750970 -233913383 + AluSx SINE Alu 1 290 -22 417 238 151 101 chr1 8750970 8751050 -233913303 - L2 LINE L2 -529 2784 2710 1263 284 152 10 chr1 8751201 8751793 -233912560 - L2 LINE L2 -647 2667 1992 2610 44 0 0 chr1 8752723 8753019 -233911334 + AluY SINE Alu 1 296 -15 2526 71 10 0 chr1 8753023 8753333 -233911020 + AluSp SINE Alu 1 313 0 407 300 71 29 chr1 8753950 8754120 -233910233 + MIR SINE MIR 20 196 -66 251 179 0 18 chr1 8754256 8754312 -233910041 - AluSp/q SINE Alu 0 303 249 2340 90 3 13 chr1 8754319 8754629 -233909724 - AluSx SINE Alu -5 307 1 381 89 0 0 chr1 8754915 8754957 -233909396 + (TC)n Simple_repeat Simple_repeat 2 46 -11 279 0 0 0 chr1 8754957 8754988 -233909365 + (CA)n Simple_repeat Simple_repeat 1 31 0 381 89 0 0 chr1 8754988 8755001 -233909352 + (TC)n Simple_repeat Simple_repeat 45 57 0 321 255 133 0 chr1 8755365 8755463 -233908890 + MIR SINE MIR 80 190 -72 2142 113 0 3 chr1 8755468 8755773 -233908580 - AluSx SINE Alu 0 304 1 1951 139 0 17 chr1 8756167 8756304 -233908049 + AluJb SINE Alu 1 139 -171 2244 98 10 7 chr1 8756304 8756600 -233907753 + AluSx SINE Alu 1 297 -15 1951 139 0 17 chr1 8756600 8756777 -233907576 + AluJb SINE Alu 139 310 0 2424 84 0 0 chr1 8757220 8757517 -233906836 - AluY SINE Alu -14 297 1 1981 169 68 39 chr1 8757702 8758084 -233906269 + MSTB LTR MaLR 1 397 -29 1785 82 0 9 chr1 8758084 8758316 -233906037 + MER30 DNA MER1_type 1 230 0 1981 169 68 39 chr1 8758316 8758347 -233906006 + MSTB LTR MaLR 397 426 0 2341 82 0 0 chr1 8758362 8758674 -233905679 - AluSc SINE Alu 0 312 1 211 172 35 0 chr1 8758708 8758766 -233905587 + A-rich Low_complexity Low_complexity 4 63 0 2060 127 0 3 chr1 8758770 8759085 -233905268 + AluJb SINE Alu 1 314 0 688 262 139 36 chr1 8759211 8759617 -233904736 + MLT1G1 LTR MaLR 1 496 -71 2210 91 20 17 chr1 8759617 8759913 -233904440 - AluSx SINE Alu -15 297 1 688 262 139 36 chr1 8759913 8759963 -233904390 + MLT1G1 LTR MaLR 496 539 -28 240 228 30 30 chr1 8759965 8760066 -233904287 + MLT1G1-int LTR MaLR 1 101 -1270 340 338 31 14 chr1 8760074 8760296 -233904057 + MLT1G1-int LTR MaLR 290 515 -856 28 0 0 0 chr1 8760301 8760329 -233904024 + AT_rich Low_complexity Low_complexity 1 28 0 2370 87 3 0 chr1 8760408 8760708 -233903645 + AluSx SINE Alu 1 301 -11 200 97 65 16 chr1 8760956 8761018 -233903335 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 288 217 0 0 chr1 8761151 8761220 -233903133 + AluSp/q SINE Alu 233 301 -2 1959 106 26 70 chr1 8762052 8762364 -233901989 - AluSx SINE Alu -14 298 1 2337 96 10 0 chr1 8762373 8762674 -233901679 - AluSx SINE Alu -8 304 1 2315 106 0 0 chr1 8763010 8763311 -233901042 - AluSg SINE Alu -8 302 2 2007 108 0 0 chr1 8763603 8763863 -233900490 - AluSc SINE Alu -21 288 29 1534 102 9 14 chr1 8764487 8764703 -233899650 - AluSg/x SINE Alu -22 288 74 392 308 77 16 chr1 8764798 8764980 -233899373 + MIR SINE MIR 18 210 -52 347 294 37 37 chr1 8765159 8765295 -233899058 + MIR3 SINE MIR 68 203 -5 302 277 8 50 chr1 8765363 8765427 -233898926 - MIR SINE MIR -1 261 202 2157 109 0 0 chr1 8765427 8765746 -233898607 - AluY SINE Alu 0 319 1 302 277 8 50 chr1 8765746 8765799 -233898554 - MIR SINE MIR -60 202 148 1330 178 82 4 chr1 8765918 8766149 -233898204 - AluJo SINE Alu -63 249 1 2570 53 0 37 chr1 8766164 8766485 -233897868 - AluY SINE Alu -2 309 1 228 241 86 0 chr1 8766622 8766680 -233897673 + L2 LINE L2 3208 3270 -2 495 241 153 76 chr1 8767647 8767842 -233896511 + L1MC5 LINE L1 6920 7098 -863 2253 114 0 16 chr1 8767842 8768157 -233896196 - AluSx SINE Alu -2 310 1 495 241 153 76 chr1 8768157 8768241 -233896112 + L1MC5 LINE L1 7098 7174 -787 1559 120 5 0 chr1 8768241 8768457 -233895896 - AluSq SINE Alu -20 293 77 495 241 153 76 chr1 8768457 8768678 -233895675 + L1MC5 LINE L1 7174 7460 -501 26 0 0 0 chr1 8768829 8768855 -233895498 + AT_rich Low_complexity Low_complexity 1 26 0 227 51 0 0 chr1 8769104 8769143 -233895210 + Alu SINE Alu 128 166 0 2010 133 7 13 chr1 8769182 8769491 -233894862 - AluJb SINE Alu -5 307 1 24 0 0 0 chr1 8770156 8770180 -233894173 + AT_rich Low_complexity Low_complexity 1 24 0 1046 182 107 36 chr1 8770694 8770974 -233893379 - AluJb SINE Alu -2 300 1 2226 158 0 0 chr1 8771001 8771337 -233893016 + MER1B DNA MER1_type 2 337 0 1512 191 14 27 chr1 8771454 8771747 -233892606 + AluJo SINE Alu 1 289 -23 2261 93 0 10 chr1 8771762 8772062 -233892291 + AluSg SINE Alu 1 297 -13 797 178 7 27 chr1 8772084 8772230 -233892123 + AluJb SINE Alu 13 155 -157 2430 91 3 0 chr1 8772334 8772641 -233891712 + AluSc SINE Alu 1 308 -1 1825 121 21 25 chr1 8772891 8773205 -233891148 - AluSg SINE Alu 0 313 1 242 300 10 10 chr1 8773674 8773774 -233890579 + L2 LINE L2 2681 2780 -534 1143 134 0 0 chr1 8774185 8774342 -233890011 + AluSg/x SINE Alu 125 281 -31 2348 112 0 0 chr1 8774779 8775082 -233889271 + AluSx SINE Alu 1 303 -9 2151 140 0 0 chr1 8775214 8775521 -233888832 + AluSq SINE Alu 1 307 -6 553 168 103 52 chr1 8775522 8775677 -233888676 - AluJo SINE Alu -36 276 114 590 0 14 0 chr1 8775735 8775805 -233888548 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1528 186 10 35 chr1 8775805 8775955 -233888398 - AluJo SINE Alu -29 283 142 2492 67 3 7 chr1 8775955 8776252 -233888101 - AluSp SINE Alu -13 300 5 1528 186 10 35 chr1 8776252 8776391 -233887962 - AluJo SINE Alu -170 142 1 2250 103 7 7 chr1 8776401 8776702 -233887651 - AluSp SINE Alu -12 301 1 2323 92 7 0 chr1 8776704 8776997 -233887356 - AluSp SINE Alu -18 295 1 22 35 0 0 chr1 8777224 8777253 -233887100 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 8777311 8777334 -233887019 + AT_rich Low_complexity Low_complexity 1 23 0 2307 112 0 0 chr1 8777456 8777751 -233886602 + AluSx SINE Alu 1 295 -17 759 275 37 68 chr1 8778187 8778560 -233885793 - L2 LINE L2 -5 3308 2948 1863 120 88 0 chr1 8778560 8778843 -233885510 + AluSx SINE Alu 1 308 -4 759 275 37 68 chr1 8778843 8778898 -233885455 - L2 LINE L2 -365 2948 2893 2458 103 0 0 chr1 8778903 8779215 -233885138 + AluSx SINE Alu 1 312 0 691 198 78 12 chr1 8780023 8780190 -233884163 + MIR SINE MIR 69 246 -16 1742 164 17 27 chr1 8780328 8780626 -233883727 + AluJb SINE Alu 1 295 -17 2523 66 3 0 chr1 8780701 8781003 -233883350 + AluSp SINE Alu 1 303 -10 323 23 23 0 chr1 8781003 8781047 -233883306 + (TA)n Simple_repeat Simple_repeat 2 46 0 2293 114 0 0 chr1 8781298 8781588 -233882765 + AluSg SINE Alu 3 292 -18 2434 94 0 0 chr1 8781589 8781897 -233882456 + AluSg SINE Alu 1 308 -2 1280 204 68 11 chr1 8782042 8782322 -233882031 - AluJo SINE Alu -6 296 1 225 0 0 0 chr1 8783244 8783269 -233881084 + (TA)n Simple_repeat Simple_repeat 1 25 0 229 233 0 0 chr1 8783269 8783329 -233881024 - L1MC4 LINE L1 -1339 6703 6644 1232 151 0 33 chr1 8783360 8783572 -233880781 - AluJo SINE Alu -103 209 5 32 0 0 0 chr1 8785341 8785373 -233878980 + GC_rich Low_complexity Low_complexity 1 32 0 2244 98 14 0 chr1 8786944 8787240 -233877113 - AluSq SINE Alu -13 300 1 2126 103 3 40 chr1 8787522 8787843 -233876510 + AluSx SINE Alu 3 311 -1 226 235 0 0 chr1 8788193 8788244 -233876109 + L1 LINE L1 4284 4334 -1812 1555 152 78 19 chr1 8788275 8788544 -233875809 - AluJb SINE Alu -27 285 1 1821 164 6 35 chr1 8788591 8788909 -233875444 + AluJo SINE Alu 1 309 -3 2158 96 0 4 chr1 8788943 8789224 -233875129 + AluSx SINE Alu 20 299 -13 378 170 2 5 chr1 8789560 8789656 -233874697 - AluS SINE Alu 0 301 228 216 97 0 0 chr1 8789681 8789712 -233874641 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 2089 104 0 17 chr1 8789714 8790001 -233874352 - AluSx SINE Alu -30 282 1 1909 133 0 65 chr1 8790021 8790212 -233874141 - AluSx SINE Alu -11 301 138 2172 122 3 0 chr1 8790212 8790507 -233873846 + AluSp SINE Alu 1 296 -17 1909 133 0 65 chr1 8790507 8790637 -233873716 - AluSx SINE Alu -174 138 1 2085 114 3 13 chr1 8790695 8790994 -233873359 - AluSg SINE Alu -14 296 1 928 202 0 0 chr1 8791050 8791218 -233873135 + FAM SINE Alu 2 169 -6 1970 154 3 0 chr1 8791243 8791535 -233872818 + AluSq SINE Alu 1 293 -20 751 184 8 0 chr1 8792293 8792418 -233871935 + FAM SINE Alu 41 166 -19 21 36 0 0 chr1 8792418 8792446 -233871907 + AT_rich Low_complexity Low_complexity 1 28 0 2399 81 3 3 chr1 8792455 8792763 -233871590 + AluY SINE Alu 1 308 -3 1106 264 84 39 chr1 8792843 8793429 -233870924 - L1M4 LINE L1 -1218 4928 4317 2258 109 3 0 chr1 8793490 8793783 -233870570 - AluSx SINE Alu -18 294 1 2013 113 7 4 chr1 8795180 8795454 -233868899 - AluSx SINE Alu -24 288 14 2176 119 13 13 chr1 8795472 8795783 -233868570 - AluSx SINE Alu -1 311 1 24 53 0 0 chr1 8795890 8795928 -233868425 + AT_rich Low_complexity Low_complexity 1 38 0 2057 105 0 90 chr1 8796749 8796841 -233867512 + AluSx SINE Alu 1 100 -212 2399 91 3 3 chr1 8796841 8797150 -233867203 + AluSc SINE Alu 1 309 0 2057 105 0 90 chr1 8797150 8797219 -233867134 + AluSx SINE Alu 100 174 -138 2429 87 3 0 chr1 8797219 8797517 -233866836 + AluSp SINE Alu 2 300 -13 2057 105 0 90 chr1 8797517 8797688 -233866665 + AluSx SINE Alu 174 304 -8 337 261 60 65 chr1 8797889 8798104 -233866249 + MIR SINE MIR 48 261 -1 286 234 47 0 chr1 8798161 8798225 -233866128 + MIR SINE MIR 14 80 -182 * 552 237 46 8 chr1 8798211 8798342 -233866011 + L2 LINE L2 3137 3272 0 219 304 63 0 chr1 8799161 8799240 -233865113 + MIR SINE MIR 32 115 -93 1931 164 0 0 chr1 8799579 8799878 -233864475 + AluSx SINE Alu 1 299 -13 2025 150 3 31 chr1 8800027 8800381 -233863972 + MER7A DNA MER2_type 5 346 0 429 133 0 0 chr1 8800451 8800511 -233863842 + AluS SINE Alu 2 61 -257 1022 118 0 7 chr1 8800614 8800758 -233863595 + AluSg/x SINE Alu 129 271 -41 741 116 124 8 chr1 8800769 8800890 -233863463 + FLAM_C SINE Alu 2 136 -7 2092 138 0 0 chr1 8801182 8801473 -233862880 - AluSx SINE Alu -21 291 1 2536 81 0 3 chr1 8801960 8802270 -233862083 - AluSc SINE Alu 0 309 1 2508 134 57 2 chr1 8802640 8803044 -233861309 + MSTB LTR MaLR 1 426 0 426 252 63 25 chr1 8803111 8803270 -233861083 + HsTC2 DNA Tc2 729 893 -1005 1880 118 0 0 chr1 8803389 8803666 -233860687 + AluSx SINE Alu 35 312 0 1920 138 3 3 chr1 8804076 8804358 -233859995 - AluSx SINE Alu -8 304 23 990 148 206 18 chr1 8805160 8805383 -233858970 + L1MD3 LINE L1 7730 7994 -1 400 250 60 9 chr1 8806089 8806205 -233858148 - L2 LINE L2 -3 3310 3189 2004 98 0 85 chr1 8806536 8806670 -233857683 + AluSc SINE Alu 1 145 -182 2372 95 10 0 chr1 8806670 8806974 -233857379 + AluSc SINE Alu 1 307 -2 2004 98 0 85 chr1 8806974 8807192 -233857161 + AluSc SINE Alu 145 327 0 2332 99 6 6 chr1 8807881 8808193 -233856160 + AluSx SINE Alu 1 312 0 234 0 0 0 chr1 8808838 8808864 -233855489 + (CA)n Simple_repeat Simple_repeat 2 27 0 2473 68 3 13 chr1 8809034 8809343 -233855010 + AluY SINE Alu 1 306 -5 2266 102 3 0 chr1 8809989 8810283 -233854070 + AluSp SINE Alu 1 295 -18 372 293 13 63 chr1 8810335 8810530 -233853823 + FAM SINE Alu 1 168 -7 1417 137 11 48 chr1 8811362 8811632 -233852721 - AluJb SINE Alu 0 312 53 304 331 122 0 chr1 8811664 8811812 -233852541 - L1ME4a LINE L1 -82 6039 5874 2160 117 0 19 chr1 8812026 8812205 -233852148 - AluSg SINE Alu 0 310 138 2377 86 0 3 chr1 8812205 8812496 -233851857 - AluY SINE Alu -21 290 1 2160 117 0 19 chr1 8812496 8812632 -233851721 - AluSg SINE Alu -172 138 1 2067 125 4 0 chr1 8812637 8812938 -233851415 - AluSx SINE Alu 0 302 1 798 169 0 22 chr1 8813158 8813294 -233851059 - FLAM_C SINE Alu 0 133 1 342 231 17 34 chr1 8813294 8813402 -233850951 - L1ME4a LINE L1 -271 5850 5743 194 269 43 65 chr1 8813401 8813494 -233850859 + MIR SINE MIR 114 204 -58 * 1606 171 33 0 chr1 8813560 8813834 -233850519 - AluJo SINE Alu -29 283 1 1633 129 30 113 chr1 8814677 8814958 -233849395 - MER7A DNA MER2_type -2699 339 97 2281 98 0 0 chr1 8814958 8815245 -233849108 - AluSg SINE Alu -23 287 1 1633 129 30 113 chr1 8815245 8815334 -233849019 - MER7A DNA MER2_type -2941 97 2 1293 142 5 10 chr1 8815590 8815787 -233848566 + AluSx SINE Alu 26 221 -91 884 152 7 7 chr1 8815926 8816064 -233848289 - AluJo SINE Alu -174 138 1 2111 139 0 0 chr1 8816084 8816387 -233847966 - AluSq SINE Alu -10 303 1 1956 153 0 10 chr1 8816451 8816758 -233847595 - AluJb SINE Alu -4 308 5 189 173 77 58 chr1 8818081 8818133 -233846220 + MIR SINE MIR 33 85 -123 2175 102 0 3 chr1 8818176 8818495 -233845858 - AluSg SINE Alu 0 318 1 2390 92 0 3 chr1 8818602 8818907 -233845446 - AluSq SINE Alu -9 304 1 2400 73 3 0 chr1 8819032 8819319 -233845034 - AluSq SINE Alu -25 288 1 2130 107 7 0 chr1 8819645 8819969 -233844384 - AluSx SINE Alu 0 326 1 885 116 0 8 chr1 8821021 8821150 -233843203 - AluSg/x SINE Alu -12 300 173 1968 112 0 14 chr1 8821701 8821987 -233842366 - AluSx SINE Alu -19 293 12 744 188 0 16 chr1 8822012 8822140 -233842213 - FLAM_C SINE Alu -16 127 2 308 263 59 59 chr1 8822140 8822258 -233842095 - L1M4 LINE L1 -6376 166 49 2104 77 26 4 chr1 8822555 8822827 -233841526 + AluSq SINE Alu 14 291 -22 986 151 6 67 chr1 8822834 8823013 -233841340 + AluSg/x SINE Alu 128 295 -15 227 217 14 72 chr1 8823246 8823315 -233841038 - MIR SINE MIR -124 84 20 305 226 105 65 chr1 8824285 8824409 -233839944 - FLAM_A SINE Alu -4 129 1 189 0 0 0 chr1 8824412 8824433 -233839920 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr1 8824951 8824973 -233839380 + AT_rich Low_complexity Low_complexity 1 22 0 778 135 35 28 chr1 8825372 8825513 -233838840 - FLAM_C SINE Alu 0 143 2 2501 80 0 0 chr1 8825546 8825857 -233838496 + AluY SINE Alu 1 311 0 290 289 217 7 chr1 8826798 8826950 -233837403 + MIR SINE MIR 24 207 -55 2207 88 13 13 chr1 8827475 8827780 -233836573 + AluSp SINE Alu 1 305 -8 2116 112 0 0 chr1 8828089 8828366 -233835987 + AluSx SINE Alu 21 297 -15 700 196 8 23 chr1 8828375 8828508 -233835845 + FLAM_C SINE Alu 2 132 -1 1072 153 139 0 chr1 8828597 8828799 -233835554 - AluJo SINE Alu -20 292 63 1036 177 0 31 chr1 8828907 8829099 -233835254 - AluJo SINE Alu -126 186 1 2280 110 0 3 chr1 8829322 8829630 -233834723 - AluSc SINE Alu -2 307 1 258 240 0 27 chr1 8831338 8831413 -233832940 + CT-rich Low_complexity Low_complexity 4 76 0 369 274 162 11 chr1 8831659 8831838 -233832515 + L3 LINE CR1 1294 1499 -78 2598 52 0 3 chr1 8832021 8832328 -233832025 + AluY SINE Alu 1 306 -5 989 157 7 7 chr1 8833189 8833342 -233831011 + FRAM SINE Alu 1 153 -23 2174 110 7 19 chr1 8833364 8833500 -233830853 + AluSx SINE Alu 1 137 -175 2080 129 10 7 chr1 8833500 8833809 -233830544 + AluSx SINE Alu 1 310 -2 2174 110 7 19 chr1 8833809 8833980 -233830373 + AluSx SINE Alu 137 304 -8 2340 102 0 0 chr1 8835141 8835435 -233828918 - AluSx SINE Alu -18 294 1 1235 153 6 0 chr1 8836337 8836520 -233827833 - AluSg/x SINE Alu -57 255 72 420 186 0 0 chr1 8837260 8837330 -233827023 - AluJ/FRAM SINE Alu -19 293 224 24 0 0 0 chr1 8837806 8837830 -233826523 + AT_rich Low_complexity Low_complexity 1 24 0 652 251 56 101 chr1 8838484 8838698 -233825655 + L2 LINE L2 2972 3166 -147 2030 135 0 0 chr1 8838698 8839007 -233825346 + AluSx SINE Alu 1 309 0 652 251 56 101 chr1 8839007 8839149 -233825204 + L2 LINE L2 3166 3313 0 198 91 0 0 chr1 8839224 8839257 -233825096 + (TTAAA)n Simple_repeat Simple_repeat 1 33 0 969 118 7 0 chr1 8839257 8839392 -233824961 - L1PA8 LINE L1 -5 6167 6032 1168 108 0 6 chr1 8839572 8839739 -233824614 - AluY SINE Alu -7 304 139 1778 83 26 0 chr1 8839741 8839971 -233824382 + AluSc SINE Alu 56 291 -18 2355 71 7 7 chr1 8840525 8840820 -233823533 + AluY SINE Alu 1 295 -16 2261 94 10 3 chr1 8842490 8842788 -233821565 - AluSc SINE Alu -9 300 1 1933 134 29 0 chr1 8843683 8843959 -233820394 + AluSx SINE Alu 2 285 -27 25 0 0 0 chr1 8843959 8843984 -233820369 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 8845943 8845964 -233818389 + AT_rich Low_complexity Low_complexity 1 21 0 466 106 0 0 chr1 8847971 8848037 -233816316 + Alu SINE Alu 2 67 -251 1033 0 0 0 chr1 8848062 8848167 -233816186 + U6 snRNA snRNA 1 105 -2 234 182 0 0 chr1 8848167 8848233 -233816120 + A-rich Low_complexity Low_complexity 1 66 0 21 0 0 0 chr1 8848681 8848702 -233815651 + AT_rich Low_complexity Low_complexity 1 21 0 2098 113 0 0 chr1 8849051 8849365 -233814988 + AluSx SINE Alu 1 314 0 485 237 203 0 chr1 8850150 8850268 -233814085 + FLAM_A SINE Alu 1 142 0 413 52 0 143 chr1 8850444 8850480 -233813873 - MER41B LTR ERV1 -88 547 526 2227 106 20 0 chr1 8850480 8850782 -233813571 + AluSx SINE Alu 1 308 -4 413 52 0 143 chr1 8850782 8850822 -233813531 - MER41B LTR ERV1 -109 526 482 233 215 27 87 chr1 8852104 8852253 -233812100 + T-rich Low_complexity Low_complexity 2 141 0 1706 174 26 3 chr1 8855570 8855874 -233808479 + 7SLRNA srpRNA srpRNA 10 320 0 2250 116 7 0 chr1 8856396 8856706 -233807647 - AluSx SINE Alu 0 312 1 765 287 185 12 chr1 8858741 8859246 -233805107 + L2 LINE L2 2590 3197 -75 967 201 27 5 chr1 8859278 8859462 -233804891 - MER5A DNA MER1_type -1 188 1 1292 212 0 9 chr1 8859473 8859695 -233804658 - MER58A DNA MER1_type -2 222 3 207 300 56 33 chr1 8859770 8859860 -233804493 - L2 LINE L2 -43 3229 3138 1469 285 138 72 chr1 8859971 8860308 -233804045 + L2 LINE L2 1361 1674 -1640 2155 110 20 13 chr1 8860308 8860607 -233803746 - AluSx SINE Alu -11 301 1 1469 285 138 72 chr1 8860607 8861761 -233802592 + L2 LINE L2 1674 2951 -363 226 301 21 65 chr1 8861935 8862028 -233802325 + L2 LINE L2 3184 3272 0 1992 146 7 7 chr1 8862152 8862461 -233801892 - AluSx SINE Alu -3 309 1 242 281 49 0 chr1 8862461 8862543 -233801810 + MIR SINE MIR 153 238 -24 2615 60 0 0 chr1 8862643 8862945 -233801408 - AluY SINE Alu -9 302 1 199 0 0 0 chr1 8862983 8863005 -233801348 + (TTA)n Simple_repeat Simple_repeat 1 180 0 1942 100 48 0 chr1 8863005 8863277 -233801076 - AluSq SINE Alu -29 284 1 1880 173 0 0 chr1 8863503 8863815 -233800538 - AluJb SINE Alu 0 312 1 545 247 210 49 chr1 8864158 8864264 -233800089 - L1MC4 LINE L1 -122 7920 7832 2274 111 13 0 chr1 8864264 8864571 -233799782 - AluSx SINE Alu -1 311 1 545 247 210 49 chr1 8864571 8864869 -233799484 - L1MC4 LINE L1 -210 7832 7451 2399 106 0 0 chr1 8864869 8865171 -233799182 + AluSx SINE Alu 1 302 -10 1040 179 0 0 chr1 8865182 8865344 -233799009 + AluJb SINE Alu 137 298 -14 823 255 41 28 chr1 8865357 8865579 -233798774 - L1MC4 LINE L1 -591 7451 7222 1797 160 0 25 chr1 8865579 8865898 -233798455 - AluJb SINE Alu -1 311 1 823 255 41 28 chr1 8865898 8865993 -233798360 - L1MC4 LINE L1 -820 7222 7130 705 119 68 0 chr1 8865998 8866116 -233798237 - FAM SINE Alu -3 46 1 357 89 0 0 chr1 8866120 8866165 -233798188 + Alu SINE Alu 1 45 -257 1112 194 197 13 chr1 8866302 8866612 -233797741 - L1MC4 LINE L1 -919 7123 6757 2329 95 0 3 chr1 8866645 8866939 -233797414 + AluSg SINE Alu 1 293 -17 209 312 32 21 chr1 8867062 8867155 -233797198 - MIR SINE MIR -123 139 46 2208 96 10 7 chr1 8867535 8867826 -233796527 + AluSq SINE Alu 1 292 -21 615 249 62 10 chr1 8867957 8868150 -233796203 - MER106A DNA MER1_type -33 203 1 2357 84 7 0 chr1 8868199 8868496 -233795857 - AluSx SINE Alu -13 299 1 237 288 24 16 chr1 8869010 8869135 -233795218 + CT-rich Low_complexity Low_complexity 4 129 0 1700 139 100 0 chr1 8869811 8870096 -233794257 - AluSq SINE Alu 0 311 1 2168 133 0 0 chr1 8870198 8870499 -233793854 - AluSx SINE Alu -11 301 1 21 36 0 0 chr1 8870536 8870564 -233793789 + AT_rich Low_complexity Low_complexity 1 28 0 204 178 0 0 chr1 8871104 8871149 -233793204 + L2 LINE L2 3264 3308 -5 517 279 122 13 chr1 8871358 8871587 -233792766 + MIR SINE MIR 9 262 0 26 30 0 0 chr1 8871901 8871934 -233792419 + AT_rich Low_complexity Low_complexity 1 33 0 597 144 0 0 chr1 8872037 8872127 -233792226 - AluJ SINE Alu -20 292 203 874 139 0 0 chr1 8872135 8872257 -233792096 - AluJ SINE Alu -190 122 1 1443 191 40 7 chr1 8872444 8872716 -233791637 + AluJb SINE Alu 2 282 -30 226 204 78 97 chr1 8874060 8874163 -233790190 - L1ME4a LINE L1 -48 6073 5973 286 103 0 0 chr1 8876157 8876196 -233788157 + Alu SINE Alu 1 39 -262 879 85 51 0 chr1 8876196 8876314 -233788039 + AluSq/x SINE Alu 13 136 -176 2392 80 3 3 chr1 8876314 8876615 -233787738 + AluSq SINE Alu 1 301 -12 1381 176 69 24 chr1 8877020 8877310 -233787043 + AluJo SINE Alu 3 305 -7 2243 105 0 3 chr1 8878547 8878842 -233785511 + AluSg SINE Alu 1 294 -16 340 198 159 57 chr1 8879815 8879972 -233784381 - L2 LINE L2 -5 3308 3136 959 108 31 0 chr1 8880073 8880202 -233784151 + AluSq/x SINE Alu 1 133 -179 2297 98 7 3 chr1 8881151 8881458 -233782895 - AluSq SINE Alu -5 308 1 448 258 113 42 chr1 8881458 8881671 -233782682 + L1MC4 LINE L1 7809 8036 -6 26 0 0 0 chr1 8882340 8882366 -233781987 + GC_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr1 8882586 8882621 -233781732 + GC_rich Low_complexity Low_complexity 1 35 0 1837 164 7 7 chr1 8883157 8883461 -233780892 - AluJo SINE Alu -8 304 1 241 342 54 0 chr1 8883906 8884055 -233780298 + MIR SINE MIR 32 188 -74 2122 127 3 3 chr1 8884220 8884511 -233779842 + AluSx SINE Alu 1 291 -21 818 193 23 17 chr1 8884546 8884722 -233779631 + AluJb SINE Alu 126 302 -10 365 250 150 19 chr1 8884883 8885043 -233779310 - MIR SINE MIR -69 193 13 2239 47 18 11 chr1 8885131 8885405 -233778948 + AluSp SINE Alu 1 276 -37 5655 84 6 0 chr1 8885405 8886118 -233778235 - LTR5 LTR ERVK 0 969 253 4706 121 81 95 chr1 8886118 8887364 -233776989 + pTR5 LTR ERV1 753 2295 -143 2191 57 19 0 chr1 8887375 8887637 -233776716 - LTR5 LTR ERVK -702 267 1 1820 130 17 17 chr1 8887699 8887998 -233776355 + AluSx SINE Alu 1 299 -13 23 54 0 0 chr1 8888031 8888068 -233776285 + AT_rich Low_complexity Low_complexity 1 37 0 275 233 33 0 chr1 8888123 8888183 -233776170 + L2 LINE L2 3252 3313 0 588 227 110 0 chr1 8888224 8888387 -233775966 + MIR SINE MIR 15 195 -67 1045 232 94 80 chr1 8888517 8889090 -233775263 + MLT1G1 LTR MaLR 1 581 -14 2002 119 17 3 chr1 8889273 8889567 -233774786 + AluSx SINE Alu 1 298 -14 366 271 57 8 chr1 8889873 8889995 -233774358 - MIR SINE MIR -87 175 48 1708 142 4 8 chr1 8889995 8890263 -233774090 + AluJo SINE Alu 1 267 -45 1757 119 8 26 chr1 8890365 8890633 -233773720 + AluSc SINE Alu 47 309 0 669 193 0 59 chr1 8890634 8890769 -233773584 + AluJb SINE Alu 130 256 -56 873 176 7 0 chr1 8890787 8890935 -233773418 + AluJo SINE Alu 2 150 -162 201 39 0 0 chr1 8891288 8891314 -233773039 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 250 354 47 0 chr1 8892467 8892594 -233771759 - MIR SINE MIR -1 261 129 1700 174 6 34 chr1 8892718 8893039 -233771314 - AluJo SINE Alu 0 312 1 2293 110 0 3 chr1 8893262 8893570 -233770783 - AluSc SINE Alu -2 307 1 258 240 0 27 chr1 8895278 8895353 -233769000 + CT-rich Low_complexity Low_complexity 4 76 0 320 286 129 7 chr1 8895599 8895739 -233768614 + L3 LINE CR1 1294 1450 -127 2448 52 0 3 chr1 8895961 8896247 -233768106 + AluY SINE Alu 1 285 -26 2464 74 3 0 chr1 8896424 8896721 -233767632 + AluSg SINE Alu 3 300 -10 1641 175 10 33 chr1 8897494 8897797 -233766556 - AluJo SINE Alu -16 296 1 2115 125 7 0 chr1 8897808 8898103 -233766250 - AluSq SINE Alu -16 297 1 203 116 23 23 chr1 8898157 8898200 -233766153 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 925 92 23 23 chr1 8898274 8898405 -233765948 + FLAM_A SINE Alu 8 138 -4 2540 55 0 0 chr1 8898706 8898998 -233765355 - AluSg SINE Alu -18 292 1 239 111 0 22 chr1 8901853 8901898 -233762455 - L2 LINE L2 -209 3063 3020 326 291 115 7 chr1 8902962 8903110 -233761243 - MIR SINE MIR -1 261 98 739 138 13 7 chr1 8903115 8903355 -233760998 + AluSx SINE Alu 1 308 -2 1573 157 75 7 chr1 8904239 8904519 -233759834 + AluJb SINE Alu 1 299 -13 2346 93 3 3 chr1 8906026 8906337 -233758016 + AluSq SINE Alu 1 311 -2 275 328 15 38 chr1 8907298 8907429 -233756924 - MIR SINE MIR -55 207 80 1558 152 4 4 chr1 8907462 8907705 -233756648 + AluJb SINE Alu 1 243 -69 514 210 96 48 chr1 8907802 8907969 -233756384 - MER5B DNA MER1_type -3 175 1 807 153 0 29 chr1 8908629 8908766 -233755587 - FLAM_C SINE Alu 0 133 1 2506 76 0 13 chr1 8908899 8909214 -233755139 - AluSx SINE Alu 0 312 2 1290 117 73 10 chr1 8909351 8909557 -233754796 - MER20 DNA MER1_type 0 219 1 196 319 28 14 chr1 8909801 8909873 -233754480 - L2 LINE L2 -15 3257 3185 1124 148 0 0 chr1 8911330 8911492 -233752861 - FRAM SINE Alu -16 160 1 1857 170 17 3 chr1 8911707 8912007 -233752346 + AluSx SINE Alu 1 304 -8 1827 184 113 31 chr1 8912326 8912561 -233751792 - Charlie4a DNA MER1_type -1453 508 294 1907 102 91 0 chr1 8912561 8912826 -233751527 + AluSc SINE Alu 3 291 -18 2264 66 3 3 chr1 8912828 8913116 -233751237 + AluY SINE Alu 1 288 -23 1827 184 113 31 chr1 8913116 8913328 -233751025 - Charlie4a DNA MER1_type -1667 294 21 1585 158 82 0 chr1 8913365 8913644 -233750709 + AluJb SINE Alu 1 302 -10 31 68 0 0 chr1 8913702 8913761 -233750592 + AT_rich Low_complexity Low_complexity 1 59 0 838 279 70 8 chr1 8913919 8914163 -233750190 - MIR SINE MIR -2 260 2 1710 162 44 0 chr1 8914234 8914356 -233749997 + AluJo SINE Alu 1 116 -196 189 0 0 0 chr1 8914356 8914377 -233749976 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1710 162 44 0 chr1 8914377 8914551 -233749802 + AluJo SINE Alu 116 310 -2 390 282 28 66 chr1 8914815 8915028 -233749325 - L2 LINE L2 -628 2686 2482 24 0 0 0 chr1 8918426 8918450 -233745903 + AT_rich Low_complexity Low_complexity 1 24 0 2311 69 0 0 chr1 8918636 8918925 -233745428 + AluSg1 SINE Alu 1 289 -20 323 183 0 0 chr1 8919072 8919132 -233745221 - AluJo SINE Alu -3 299 240 2212 75 0 0 chr1 8919170 8919481 -233744872 + AluSc SINE Alu 1 311 0 1393 193 0 0 chr1 8919481 8919730 -233744623 - AluJo SINE Alu -63 249 1 413 294 96 14 chr1 8919759 8919977 -233744376 + MARNA DNA Mariner 68 303 -283 1247 162 93 15 chr1 8920016 8920275 -233744078 + AluJo SINE Alu 13 291 -21 2368 79 0 0 chr1 8920277 8920580 -233743773 + AluSq SINE Alu 1 303 -10 203 159 0 127 chr1 8920648 8920711 -233743642 + A-rich Low_complexity Low_complexity 1 55 0 838 132 0 0 chr1 8921123 8921252 -233743101 + AluSp/q SINE Alu 173 301 -12 2028 107 7 0 chr1 8922303 8922627 -233741726 + AluSx SINE Alu 1 326 0 2402 70 3 0 chr1 8922953 8923253 -233741100 + AluSq SINE Alu 1 301 -12 513 224 147 0 chr1 8923900 8924043 -233740310 + MIR SINE MIR 3 166 -96 1777 167 13 10 chr1 8924747 8925058 -233739295 + AluJb SINE Alu 1 312 0 1672 171 3 7 chr1 8925342 8925629 -233738724 + AluJo SINE Alu 5 290 -22 2142 112 0 3 chr1 8925959 8926264 -233738089 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr1 8926561 8926584 -233737769 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 8926717 8926739 -233737614 + AT_rich Low_complexity Low_complexity 1 22 0 2279 89 3 0 chr1 8926750 8927053 -233737300 - AluSx SINE Alu -8 304 1 2445 63 0 0 chr1 8927274 8927574 -233736779 + AluY SINE Alu 1 300 -11 215 257 188 20 chr1 8928263 8928364 -233735989 - L2 LINE L2 0 3272 3155 748 181 23 8 chr1 8928365 8928498 -233735855 + AluJo SINE Alu 2 136 -176 2254 101 0 0 chr1 8928498 8928806 -233735547 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr1 8928806 8928828 -233735525 + AT_rich Low_complexity Low_complexity 1 22 0 395 88 10 0 chr1 8929138 8929200 -233735153 + Alu SINE Alu 237 288 -14 2049 104 0 4 chr1 8929313 8929592 -233734761 - AluSx SINE Alu -17 295 18 560 104 0 0 chr1 8929636 8929713 -233734640 + Alu SINE Alu 2 78 -231 1161 124 0 16 chr1 8929735 8929920 -233734433 - AluSg/x SINE Alu -2 310 129 2016 131 0 16 chr1 8929928 8930240 -233734113 - AluSc SINE Alu -2 307 1 713 227 78 0 chr1 8930475 8930629 -233733724 - MER21B LTR ERV1 -369 494 329 748 319 111 11 chr1 8931178 8931529 -233732824 + L2 LINE L2 2900 3285 -28 1456 174 11 26 chr1 8931560 8931830 -233732523 + AluJo SINE Alu 1 266 -46 2294 91 3 0 chr1 8931864 8932171 -233732182 + AluSp SINE Alu 1 308 -5 2048 102 14 10 chr1 8932185 8932479 -233731874 + AluSx SINE Alu 1 295 -17 1502 205 0 7 chr1 8932502 8932827 -233731526 + AluJb SINE Alu 10 312 0 342 67 0 0 chr1 8932857 8932902 -233731451 + (TAA)n Simple_repeat Simple_repeat 2 46 0 801 197 0 14 chr1 8933029 8933176 -233731177 + FRAM SINE Alu 2 146 -30 436 202 18 55 chr1 8933545 8933654 -233730699 + MER20B DNA MER1_type 1 105 -678 1655 155 40 10 chr1 8933876 8934173 -233730180 + AluJo SINE Alu 1 306 -6 312 293 178 19 chr1 8934176 8934333 -233730020 + L2 LINE L2 1017 1198 -2116 481 205 71 31 chr1 8934337 8934464 -233729889 - MER104 DNA Tc2 -4 176 45 1501 173 11 4 chr1 8934466 8934737 -233729616 + AluJo SINE Alu 1 273 -39 527 174 0 0 chr1 8934737 8934823 -233729530 + AluSg/x SINE Alu 130 215 -95 380 305 99 0 chr1 8935756 8935907 -233728446 + Charlie1b DNA MER1_type 147 312 -211 2322 71 0 0 chr1 8935926 8936222 -233728131 - AluSg SINE Alu -14 296 1 2014 108 3 0 chr1 8936236 8936522 -233727831 - AluSx SINE Alu -25 287 1 928 182 0 6 chr1 8936524 8936689 -233727664 - FRAM SINE Alu -15 161 1 266 239 55 37 chr1 8936731 8936748 -233727605 - L1MA10 LINE L1 0 6334 6318 2088 192 68 46 chr1 8936748 8937235 -233727118 - L1ME1 LINE L1 -5 6161 5658 1557 142 56 8 chr1 8937235 8937503 -233726850 - AluSg SINE Alu -29 281 1 2088 192 68 46 chr1 8937503 8937584 -233726769 - L1ME1 LINE L1 -508 5658 5580 2099 125 0 3 chr1 8937585 8937898 -233726455 + AluSx SINE Alu 1 312 0 935 137 18 36 chr1 8938318 8938486 -233725867 - FRAM SINE Alu -1 165 1 1622 139 10 17 chr1 8938635 8938923 -233725430 - AluSx SINE Alu -26 286 1 2099 97 3 7 chr1 8939298 8939598 -233724755 + AluSg SINE Alu 1 299 -11 1659 170 0 0 chr1 8940724 8941041 -233723312 - AluJo SINE Alu 0 317 1 23 0 0 0 chr1 8941923 8941946 -233722407 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr1 8942046 8942082 -233722271 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 8942138 8942160 -233722193 + AT_rich Low_complexity Low_complexity 1 22 0 657 278 129 93 chr1 8945042 8945337 -233719016 + L2 LINE L2 2225 2508 -764 1630 170 0 0 chr1 8945337 8945608 -233718745 + AluJo SINE Alu 27 297 -15 657 278 129 93 chr1 8945608 8946316 -233718037 + L2 LINE L2 2508 3272 0 509 230 139 24 chr1 8946408 8946573 -233717780 - MIR SINE MIR -29 233 50 2003 134 0 7 chr1 8947056 8947362 -233716991 + AluSx SINE Alu 1 304 -8 1730 131 48 14 chr1 8947377 8947692 -233716661 + AluJo SINE Alu 12 336 0 1796 117 44 11 chr1 8947792 8948065 -233716288 - AluSx SINE Alu -30 282 1 1428 162 21 0 chr1 8948071 8948335 -233716018 - AluJo SINE Alu 0 308 40 241 197 38 29 chr1 8948335 8948460 -233715893 - L1ME LINE L1 -282 5884 5757 1061 218 0 25 chr1 8948461 8948741 -233715612 - AluJb SINE Alu -13 299 27 2001 122 0 0 chr1 8948777 8949071 -233715282 - AluSx SINE Alu -18 294 1 2300 60 10 3 chr1 8949110 8949411 -233714942 + AluY SINE Alu 1 303 -8 2321 58 3 22 chr1 8949541 8949853 -233714500 + AluSp SINE Alu 1 306 -7 968 88 15 0 chr1 8949909 8950046 -233714307 + AluSp/q SINE Alu 165 303 -10 457 276 0 24 chr1 8950075 8950198 -233714155 + MSTB LTR MaLR 208 327 -99 906 114 0 0 chr1 8950203 8950334 -233714019 - AluSg1 SINE Alu -178 131 1 278 103 0 0 chr1 8950334 8950373 -233713980 + MSTB LTR MaLR 388 426 0 2260 91 0 7 chr1 8950433 8950740 -233713613 + AluY SINE Alu 1 305 -6 1831 104 0 0 chr1 8951149 8951408 -233712945 - AluY SINE Alu -12 299 41 914 231 124 43 chr1 8951443 8951755 -233712598 + L1MEc LINE L1 1836 2121 -4275 2027 121 7 3 chr1 8951755 8952060 -233712293 + AluSx SINE Alu 1 306 -6 914 231 124 43 chr1 8952060 8952280 -233712073 + L1MEc LINE L1 2121 2411 -3985 2032 126 10 0 chr1 8952757 8953066 -233711287 + AluSx SINE Alu 1 312 0 313 241 71 35 chr1 8953178 8953319 -233711034 + L3 LINE CR1 1404 1549 -28 240 35 0 0 chr1 8953402 8953431 -233710922 + (A)n Simple_repeat Simple_repeat 1 29 0 1353 135 0 28 chr1 8954074 8954289 -233710064 - AluJo SINE Alu -22 290 82 1902 101 4 22 chr1 8954313 8954591 -233709762 + AluSq SINE Alu 1 273 -40 182 36 0 36 chr1 8954596 8954624 -233709729 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 640 173 0 0 chr1 8954840 8954944 -233709409 + AluJb SINE Alu 2 105 -207 787 271 268 8 chr1 8954944 8955328 -233709025 + MER20B DNA MER1_type 300 783 0 2053 126 7 0 chr1 8955458 8955760 -233708593 - AluSx SINE Alu -8 304 1 1996 125 7 3 chr1 8955780 8956077 -233708276 - AluSx SINE Alu -14 298 1 23 0 0 0 chr1 8956648 8956671 -233707682 + AT_rich Low_complexity Low_complexity 1 23 0 902 181 71 16 chr1 8956673 8956855 -233707498 - AluJo SINE Alu -35 277 86 2109 106 3 7 chr1 8956892 8957195 -233707158 + AluSq SINE Alu 5 306 -7 1662 104 0 4 chr1 8957366 8957596 -233706757 - AluSx SINE Alu -83 229 1 22 0 0 0 chr1 8958167 8958189 -233706164 + AT_rich Low_complexity Low_complexity 1 22 0 902 181 71 16 chr1 8958191 8958373 -233705980 - AluJo SINE Alu -35 277 86 2201 104 0 7 chr1 8958404 8958713 -233705640 + AluSx SINE Alu 1 307 -5 687 106 19 10 chr1 8959658 8959762 -233704591 - AluSq/x SINE Alu -179 133 29 1291 109 16 0 chr1 8959877 8960069 -233704284 + AluSg/x SINE Alu 103 297 -13 1607 86 125 16 chr1 8960070 8960326 -233704027 - AluSg1 SINE Alu -16 293 10 2166 98 3 0 chr1 8960338 8960635 -233703718 - AluY SINE Alu -13 298 1 2335 63 7 7 chr1 8960715 8961015 -233703338 - AluY SINE Alu -11 300 1 2404 61 0 14 chr1 8961668 8961965 -233702388 - AluY SINE Alu -18 293 1 1951 88 95 4 chr1 8961975 8962238 -233702115 - AluSq SINE Alu -24 289 3 2425 84 3 0 chr1 8963475 8963772 -233700581 - AluSx SINE Alu -14 298 1 2603 62 0 0 chr1 8963895 8964199 -233700154 - AluY SINE Alu -7 304 1 1906 164 0 0 chr1 8964240 8964521 -233699832 + AluJb SINE Alu 1 281 -31 183 42 0 0 chr1 8964521 8964545 -233699808 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 547 294 17 23 chr1 8964600 8964777 -233699576 + L2 LINE L2 3127 3302 -11 1437 170 22 107 chr1 8964777 8964910 -233699443 + AluJo SINE Alu 1 144 -158 2165 105 14 0 chr1 8964910 8965069 -233699284 - AluSc SINE Alu -19 290 124 2199 112 3 3 chr1 8965069 8965372 -233698981 - AluSg SINE Alu -7 303 1 2165 105 14 0 chr1 8965372 8965497 -233698856 - AluSc SINE Alu -185 124 2 1445 188 114 0 chr1 8965497 8965775 -233698578 - AluJb SINE Alu 0 307 1 1437 170 22 107 chr1 8965775 8965957 -233698396 + AluJo SINE Alu 142 291 -11 246 235 160 28 chr1 8965983 8965995 -233698358 - MIR SINE MIR -49 159 150 2377 76 0 20 chr1 8965995 8966296 -233698057 - AluY SINE Alu -16 295 1 246 235 160 28 chr1 8966296 8966407 -233697946 - MIR SINE MIR -58 150 21 2266 113 27 0 chr1 8966486 8966787 -233697566 + AluSx SINE Alu 1 309 -3 2366 112 0 0 chr1 8967314 8967618 -233696735 - AluSx SINE Alu -8 304 1 688 252 81 33 chr1 8968056 8968109 -233696244 - MIR SINE MIR -10 252 203 864 186 155 26 chr1 8968109 8968303 -233696050 + MER20B DNA MER1_type 1 219 0 688 252 81 33 chr1 8968303 8968459 -233695894 - MIR SINE MIR -59 203 33 1928 109 0 0 chr1 8968549 8968796 -233695557 - AluSx SINE Alu -15 297 51 432 227 23 11 chr1 8968796 8968884 -233695469 + L2 LINE L2 3181 3269 -3 910 227 38 30 chr1 8969295 8969329 -233695024 - MIR SINE MIR -10 252 220 2276 114 0 0 chr1 8969329 8969626 -233694727 - AluSg SINE Alu -13 297 1 1992 112 73 3 chr1 8969634 8969921 -233694432 - AluSg1 SINE Alu -2 307 1 910 227 38 30 chr1 8969921 8970121 -233694232 - MIR SINE MIR -48 214 4 180 111 0 0 chr1 8970222 8970249 -233694104 + (T)n Simple_repeat Simple_repeat 1 27 0 1171 214 95 18 chr1 8970249 8970585 -233693768 + L1ME1 LINE L1 5508 5869 -297 234 0 0 0 chr1 8970721 8970747 -233693606 + (A)n Simple_repeat Simple_repeat 1 26 0 2366 112 0 0 chr1 8971274 8971578 -233692775 - AluSx SINE Alu -8 304 1 688 252 81 33 chr1 8972013 8972066 -233692287 - MIR SINE MIR -10 252 203 864 186 155 26 chr1 8972066 8972260 -233692093 + MER20B DNA MER1_type 1 219 0 688 252 81 33 chr1 8972260 8972416 -233691937 - MIR SINE MIR -59 203 33 1928 109 0 0 chr1 8972506 8972753 -233691600 - AluSx SINE Alu -15 297 51 432 227 23 11 chr1 8972753 8972841 -233691512 + L2 LINE L2 3181 3269 -3 2249 114 0 0 chr1 8973286 8973585 -233690768 - AluSx SINE Alu -13 299 1 783 222 22 16 chr1 8973835 8974020 -233690333 - MER5A DNA MER1_type 0 189 4 1912 123 18 4 chr1 8975434 8975735 -233688618 - AluSx SINE Alu 0 305 1 2417 84 0 28 chr1 8975831 8976153 -233688200 - AluSq SINE Alu 0 313 1 339 78 0 0 chr1 8976885 8976936 -233687417 + (CA)n Simple_repeat Simple_repeat 2 52 0 2302 110 3 0 chr1 8977707 8978007 -233686346 + AluSg SINE Alu 1 301 -9 2361 99 0 0 chr1 8980476 8980770 -233683583 + AluSx SINE Alu 3 296 -16 1396 99 0 0 chr1 8981953 8982134 -233682219 - AluSg/x SINE Alu -4 308 128 284 0 28 0 chr1 8982134 8982170 -233682183 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2125 100 24 7 chr1 8982172 8982463 -233681890 - AluSg SINE Alu -14 296 1 2132 121 0 14 chr1 8982468 8982765 -233681588 - AluSq SINE Alu -20 293 1 1661 289 116 27 chr1 8982939 8983795 -233680558 - L2 LINE L2 -4 3309 2531 1780 136 4 25 chr1 8983795 8984074 -233680279 + AluJo SINE Alu 17 289 -23 2114 75 8 4 chr1 8984075 8984341 -233680012 + AluSq SINE Alu 33 299 -14 1661 289 116 27 chr1 8984341 8984741 -233679612 - L2 LINE L2 -781 2532 1945 2261 73 0 17 chr1 8984896 8985206 -233679147 - AluY SINE Alu 0 305 1 628 259 146 0 chr1 8985252 8985410 -233678943 - MER5A DNA MER1_type 0 189 9 826 270 116 3 chr1 8985591 8985928 -233678425 - L2 LINE L2 -1408 1906 1532 2447 92 0 3 chr1 8986034 8986338 -233678015 + AluSx SINE Alu 1 303 -9 2496 72 0 3 chr1 8986593 8986898 -233677455 - AluY SINE Alu -7 304 1 588 162 0 18 chr1 8987089 8987200 -233677153 + FLAM_A SINE Alu 33 141 -1 1947 145 24 7 chr1 8987211 8987508 -233676845 + AluJo SINE Alu 4 305 -7 332 156 0 0 chr1 8987568 8987632 -233676721 + FLAM SINE Alu 66 129 -4 230 217 14 72 chr1 8988595 8988664 -233675689 + MIR SINE MIR 20 84 -124 1017 151 6 67 chr1 8988897 8989076 -233675277 - AluSg/x SINE Alu -15 297 130 2137 77 26 4 chr1 8989083 8989355 -233674998 - AluSq SINE Alu -22 291 14 349 258 62 56 chr1 8989626 8989770 -233674583 + L1M4b LINE L1 23 479 -6376 722 188 0 16 chr1 8989770 8989898 -233674455 + FLAM_C SINE Alu 2 127 -16 2162 108 0 10 chr1 8989923 8990228 -233674125 + AluSq SINE Alu 12 313 0 2081 84 23 43 chr1 8990239 8990538 -233673815 - AluSp SINE Alu -18 295 3 2443 80 3 0 chr1 8990553 8990855 -233673498 - AluY SINE Alu -8 303 1 2408 114 0 0 chr1 8991122 8991430 -233672923 + AluSx SINE Alu 1 308 -4 2398 82 3 7 chr1 8991447 8991751 -233672602 + AluSq SINE Alu 1 303 -10 1636 168 39 39 chr1 8991936 8992246 -233672107 + AluJo SINE Alu 3 312 0 2067 150 10 3 chr1 8992253 8992559 -233671794 + AluJb SINE Alu 1 308 -4 557 214 39 73 chr1 8992569 8992687 -233671666 + L1M4b LINE L1 2220 2330 -4627 1352 181 102 8 chr1 8992687 8992952 -233671401 + AluJo SINE Alu 1 290 -22 557 214 39 73 chr1 8992952 8993039 -233671314 + L1M4b LINE L1 2330 2418 -4539 2271 114 3 0 chr1 8993039 8993338 -233671015 + AluSp SINE Alu 1 300 -13 537 222 139 0 chr1 8993985 8994129 -233670224 + MIR SINE MIR 3 166 -96 1903 162 13 19 chr1 8994833 8995147 -233669206 + AluJb SINE Alu 1 312 0 1818 171 3 7 chr1 8995427 8995714 -233668639 + AluJo SINE Alu 5 290 -22 2291 112 0 3 chr1 8996044 8996349 -233668004 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr1 8996646 8996669 -233667684 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 8996801 8996823 -233667530 + AT_rich Low_complexity Low_complexity 1 22 0 2221 75 3 3 chr1 8996926 8997208 -233667145 + AluY SINE Alu 24 305 -6 440 262 73 43 chr1 8997794 8997993 -233666360 - MIR SINE MIR -46 216 21 838 146 0 0 chr1 8999336 8999466 -233664887 - FRAM SINE Alu 0 40 1 2257 107 3 3 chr1 8999497 8999807 -233664546 + AluSx SINE Alu 3 312 0 1065 186 0 0 chr1 8999989 9000172 -233664181 - FRAM SINE Alu -1 175 1 287 277 84 0 chr1 9000346 9000429 -233663924 + L2 LINE L2 3165 3254 -18 2420 74 3 0 chr1 9000551 9000850 -233663503 + AluSp SINE Alu 1 300 -13 292 218 46 35 chr1 9001971 9002058 -233662295 - MIR SINE MIR -57 205 118 2064 115 35 0 chr1 9002624 9002912 -233661441 - AluSx SINE Alu -14 298 1 2493 70 0 0 chr1 9003192 9003491 -233660862 - AluY SINE Alu -12 299 1 884 246 8 54 chr1 9003812 9004004 -233660349 + MIR SINE MIR 2 183 -79 2082 116 3 3 chr1 9004004 9004310 -233660043 - AluSx SINE Alu 0 306 1 884 246 8 54 chr1 9004310 9004356 -233659997 + MIR SINE MIR 183 230 -32 900 178 41 0 chr1 9004722 9004868 -233659485 - AluJb SINE Alu -28 284 133 2413 70 0 20 chr1 9004871 9005172 -233659181 - AluY SINE Alu -16 295 1 1681 192 0 0 chr1 9005216 9005497 -233658856 + AluJb SINE Alu 1 281 -31 269 150 0 0 chr1 9005525 9005565 -233658788 - Alu SINE Alu -261 40 1 294 312 135 57 chr1 9005825 9005972 -233658381 + MIR3 SINE MIR 4 172 -90 1028 190 0 6 chr1 9005972 9006146 -233658207 + FAM SINE Alu 1 173 -2 294 312 135 57 chr1 9006146 9006225 -233658128 + MIR3 SINE MIR 172 243 -19 1062 107 0 57 chr1 9006325 9006508 -233657845 - AluSg/x SINE Alu 0 307 134 2260 111 3 7 chr1 9006509 9006816 -233657537 - AluSx SINE Alu -6 306 1 675 206 72 65 chr1 9006821 9006949 -233657404 - L1MC4 LINE L1 0 8042 7916 276 30 0 0 chr1 9006949 9006982 -233657371 + (TC)n Simple_repeat Simple_repeat 2 34 0 675 206 72 65 chr1 9006982 9007174 -233657179 - L1MC4 LINE L1 -126 7916 7720 2121 110 39 26 chr1 9007241 9007549 -233656804 - AluSx SINE Alu 0 312 1 1545 162 21 0 chr1 9007555 9007819 -233656534 - AluJo SINE Alu 0 308 40 234 248 80 32 chr1 9007819 9007944 -233656409 - L1ME LINE L1 -283 5887 5757 1918 156 7 10 chr1 9007945 9008246 -233656107 - AluJb SINE Alu -12 300 1 2180 111 0 3 chr1 9008256 9008544 -233655809 - AluSx SINE Alu -18 294 8 2397 88 3 0 chr1 9008559 9008853 -233655500 - AluSc SINE Alu -14 295 1 486 214 9 9 chr1 9008857 9008969 -233655384 - L1ME LINE L1 -404 5766 5655 839 251 59 12 chr1 9008985 9009240 -233655113 - L1MC4 LINE L1 -453 7589 7323 886 170 0 0 chr1 9009290 9009425 -233654928 - AluJb SINE Alu -25 287 153 2202 117 3 3 chr1 9009437 9009736 -233654617 - AluSc SINE Alu -10 299 1 265 106 64 21 chr1 9009836 9009883 -233654470 - L1ME1 LINE L1 -55 6111 6063 706 222 81 40 chr1 9009885 9010133 -233654220 - L1ME2 LINE L1 -82 6082 5825 2095 123 3 32 chr1 9010150 9010459 -233653894 - AluSq SINE Alu -13 300 1 943 133 0 0 chr1 9010459 9010594 -233653759 - AluSq/x SINE Alu -177 135 1 879 207 62 25 chr1 9010598 9010682 -233653671 - L1ME2 LINE L1 -346 5820 5741 1929 238 136 17 chr1 9010682 9011212 -233653141 - MLT1E LTR MaLR 0 593 1 879 207 62 25 chr1 9011212 9011369 -233652984 - L1ME2 LINE L1 -425 5741 5570 1649 154 6 41 chr1 9011421 9011740 -233652613 - AluJo SINE Alu -4 308 1 2310 214 39 114 chr1 9011740 9011880 -233652473 - L1ME2 LINE L1 -1730 4416 4267 2205 87 0 7 chr1 9011880 9012179 -233652174 - AluSx SINE Alu -15 297 1 2310 214 39 114 chr1 9012179 9012519 -233651834 - L1ME2 LINE L1 -1879 4267 3903 1402 168 7 41 chr1 9012519 9012811 -233651542 + AluJo SINE Alu 1 282 -30 2213 91 0 7 chr1 9012811 9013108 -233651245 - AluSg1 SINE Alu -14 295 1 2310 214 39 114 chr1 9013108 9013595 -233650758 - L1ME2 LINE L1 -2242 3904 3382 2393 84 0 0 chr1 9013595 9013904 -233650449 - AluSc SINE Alu 0 309 1 1779 163 0 0 chr1 9013907 9014202 -233650151 - AluSx SINE Alu -17 295 1 2310 214 39 114 chr1 9014202 9014338 -233650015 - L1ME2 LINE L1 -2611 3535 3390 1659 121 0 0 chr1 9014338 9014577 -233649776 - AluSq SINE Alu -74 239 1 1891 102 46 14 chr1 9014624 9014909 -233649444 - AluSg SINE Alu -16 294 1 233 250 56 42 chr1 9016232 9016304 -233648049 + L2 LINE L2 3191 3263 -9 315 285 177 54 chr1 9016399 9016763 -233647590 + L2 LINE L2 2847 3267 -5 239 79 26 0 chr1 9016765 9016803 -233647550 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 1316 132 78 5 chr1 9016896 9017115 -233647238 + MER46A DNA MER2_type 1 235 -1 244 119 30 134 chr1 9018270 9018337 -233646016 + AluJ/FRAM SINE Alu 223 282 -20 2213 91 0 7 chr1 9018337 9018634 -233645719 - AluSg1 SINE Alu -14 295 1 1260 244 47 20 chr1 9018668 9019118 -233645235 - L1M4 LINE L1 -2210 3936 3475 2393 84 0 0 chr1 9019121 9019430 -233644923 - AluSc SINE Alu 0 309 1 1831 156 0 0 chr1 9019433 9019728 -233644625 - AluSx SINE Alu -17 295 1 388 292 18 18 chr1 9019750 9019863 -233644490 - L1M4 LINE L1 -2647 3499 3387 1659 121 0 0 chr1 9019865 9020104 -233644249 - AluSq SINE Alu -74 239 1 1753 271 100 25 chr1 9020109 9020151 -233644202 - L1MEc LINE L1 -5331 1065 1028 2272 70 0 13 chr1 9020151 9020450 -233643903 - AluY SINE Alu -16 295 1 1753 271 100 25 chr1 9020450 9020633 -233643720 - L1MEc LINE L1 -5368 1028 860 2339 75 0 0 chr1 9020633 9020928 -233643425 - AluSp SINE Alu -18 295 1 1753 271 100 25 chr1 9020928 9021658 -233642695 - L1MEc LINE L1 -5536 860 37 233 186 0 0 chr1 9021659 9021702 -233642651 - L2 LINE L2 -565 2749 2707 * 411 207 71 71 chr1 9021686 9021826 -233642527 - MIR SINE MIR -59 203 64 1805 139 37 7 chr1 9022348 9022642 -233641711 - AluJb SINE Alu -9 303 1 808 114 18 0 chr1 9022700 9022814 -233641539 - AluSq/x SINE Alu -196 116 1 239 178 44 100 chr1 9022885 9022975 -233641378 + AluSc SINE Alu 119 169 -130 1494 161 51 15 chr1 9023033 9023307 -233641046 - AluJo SINE Alu -17 295 12 2042 130 0 7 chr1 9023322 9023630 -233640723 - AluSx SINE Alu -6 306 1 509 230 139 24 chr1 9024113 9024278 -233640075 + MIR SINE MIR 50 233 -29 657 278 129 93 chr1 9024370 9025078 -233639275 - L2 LINE L2 0 3272 2508 1630 170 0 0 chr1 9025078 9025349 -233639004 - AluJo SINE Alu -15 297 27 657 278 129 93 chr1 9025349 9025644 -233638709 - L2 LINE L2 -764 2508 2225 22 0 0 0 chr1 9028526 9028548 -233635805 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr1 9028604 9028640 -233635713 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 9028740 9028763 -233635590 + AT_rich Low_complexity Low_complexity 1 23 0 1645 174 0 0 chr1 9029645 9029967 -233634386 + AluJo SINE Alu 1 322 0 2279 87 0 0 chr1 9031093 9031393 -233632960 - AluSg SINE Alu -10 300 1 1683 113 117 11 chr1 9031768 9032050 -233632303 + AluSx SINE Alu 1 312 0 1965 137 0 0 chr1 9032226 9032519 -233631834 - AluSx SINE Alu -19 293 1 2219 51 19 29 chr1 9032939 9033251 -233631102 - AluY SINE Alu -2 309 1 1545 170 25 11 chr1 9033283 9033565 -233630788 + AluJb SINE Alu 1 286 -26 1895 141 0 16 chr1 9034436 9034749 -233629604 - AluJo SINE Alu -4 308 1 962 96 0 0 chr1 9034825 9034960 -233629393 + AluSg/x SINE Alu 178 312 0 2139 119 7 0 chr1 9035365 9035675 -233628678 - AluSx SINE Alu 0 312 1 385 190 20 10 chr1 9036348 9036448 -233627905 + CT-rich Low_complexity Low_complexity 5 105 0 1786 116 11 22 chr1 9036454 9036731 -233627622 - AluSx SINE Alu -38 274 1 1387 162 102 4 chr1 9036829 9037095 -233627258 + AluJo SINE Alu 1 292 -20 31 0 0 0 chr1 9037164 9037195 -233627158 + AT_rich Low_complexity Low_complexity 1 31 0 668 203 8 0 chr1 9037195 9037318 -233627035 - FLAM_C SINE Alu -19 124 1 2043 109 0 0 chr1 9037326 9037602 -233626751 - AluSx SINE Alu -16 296 21 2084 92 13 13 chr1 9037913 9038218 -233626135 - AluSp SINE Alu -8 305 1 316 283 217 7 chr1 9038743 9038895 -233625458 - MIR SINE MIR -55 207 24 2192 57 54 3 chr1 9039836 9040132 -233624221 - AluY SINE Alu 0 311 1 2266 56 0 40 chr1 9040585 9040889 -233623464 - AluY SINE Alu -18 293 2 189 264 92 35 chr1 9041914 9042001 -233622352 + L2 LINE L2 3213 3304 -9 251 196 20 0 chr1 9042314 9042365 -233621988 + L2 LINE L2 3262 3313 0 238 285 8 32 chr1 9042862 9043000 -233621353 + T-rich Low_complexity Low_complexity 1 134 0 2180 84 3 0 chr1 9043607 9043893 -233620460 - AluY SINE Alu -24 287 1 2107 103 3 13 chr1 9044320 9044632 -233619721 - AluSc SINE Alu 0 309 1 225 211 0 0 chr1 9045718 9045770 -233618583 + A-rich Low_complexity Low_complexity 1 52 0 375 23 0 0 chr1 9045792 9045836 -233618517 + (TG)n Simple_repeat Simple_repeat 1 44 0 1160 156 8 181 chr1 9051414 9051773 -233612580 - AluJb SINE Alu -5 297 1 1881 144 3 25 chr1 9051788 9052107 -233612246 - AluJb SINE Alu 0 312 1 324 256 179 89 chr1 9052576 9052889 -233611464 - HAL1 LINE L1 -1292 1215 875 344 286 70 41 chr1 9053158 9053329 -233611024 - MIR SINE MIR -50 212 37 560 264 130 13 chr1 9053952 9054183 -233610170 + L3 LINE CR1 1279 1536 -41 1892 115 4 18 chr1 9054287 9054566 -233609787 + LTR8 LTR ERV1 417 691 0 854 185 33 0 chr1 9054586 9054737 -233609616 + FRAM SINE Alu 1 155 -21 1981 107 4 0 chr1 9054737 9055007 -233609346 + AluSx SINE Alu 1 271 -41 182 36 0 36 chr1 9055013 9055041 -233609312 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 640 173 0 0 chr1 9055257 9055361 -233608992 + AluJb SINE Alu 2 105 -207 728 279 268 8 chr1 9055361 9055745 -233608608 + MER20B DNA MER1_type 300 783 0 2053 126 7 0 chr1 9055875 9056177 -233608176 - AluSx SINE Alu -8 304 1 2069 105 7 0 chr1 9056197 9056493 -233607860 - AluSx SINE Alu -14 298 1 1536 155 119 10 chr1 9056666 9056969 -233607384 + MER44D DNA MER2_type 1 606 -3 228 293 17 0 chr1 9057008 9057066 -233607287 + LTR67 LTR ERVL 122 180 -377 2134 97 0 10 chr1 9057542 9057842 -233606511 - AluY SINE Alu -14 297 1 2158 103 7 0 chr1 9057842 9058143 -233606210 - AluSx SINE Alu -9 303 1 698 239 0 136 chr1 9058287 9058373 -233605980 - MIR SINE MIR -12 250 154 1728 175 0 3 chr1 9058373 9058665 -233605688 - AluJo SINE Alu -21 291 1 698 239 0 136 chr1 9058665 9058821 -233605532 - MIR SINE MIR -108 154 41 2538 191 57 45 chr1 9058960 9059364 -233604989 + L1ME1 LINE L1 5516 5914 -420 1895 137 10 13 chr1 9059364 9059671 -233604682 + AluJb SINE Alu 1 306 -6 2538 191 57 45 chr1 9059671 9059921 -233604432 + L1ME1 LINE L1 5914 6334 0 333 234 176 21 chr1 9060036 9060153 -233604200 + MIR SINE MIR 14 147 -61 229 191 0 21 chr1 9060187 9060234 -233604119 - L2 LINE L2 -1 3312 3267 180 309 94 40 chr1 9060357 9060506 -233603847 + L2 LINE L2 2551 2707 -607 1500 182 27 0 chr1 9060526 9060784 -233603569 + AluJo SINE Alu 1 265 -47 1003 119 0 13 chr1 9060992 9061143 -233603210 + AluSg1 SINE Alu 1 149 -160 280 335 12 24 chr1 9061317 9061487 -233602866 + T-rich Low_complexity Low_complexity 2 169 0 1983 143 0 0 chr1 9061670 9061963 -233602390 - AluSg SINE Alu -17 293 1 2145 95 3 0 chr1 9061965 9062259 -233602094 - AluY SINE Alu -16 295 1 1801 124 11 0 chr1 9062261 9062526 -233601827 - AluSx SINE Alu -11 301 34 1594 97 8 53 chr1 9062631 9062878 -233601475 - MER46A DNA MER2_type 0 236 1 2119 119 7 3 chr1 9062971 9063274 -233601079 + AluSx SINE Alu 1 304 -8 2294 90 3 0 chr1 9063280 9063581 -233600772 + AluSc SINE Alu 1 302 -7 1808 156 19 10 chr1 9063706 9064014 -233600339 - AluSx SINE Alu -1 311 1 23 33 0 0 chr1 9067699 9067729 -233596624 + AT_rich Low_complexity Low_complexity 1 30 0 294 346 6 13 chr1 9070397 9070553 -233593800 + CT-rich Low_complexity Low_complexity 1 155 0 210 143 0 0 chr1 9071820 9071855 -233592498 + (TG)n Simple_repeat Simple_repeat 1 35 0 640 276 51 70 chr1 9074037 9074349 -233590004 - L2 LINE L2 -8 3305 3000 27 0 0 0 chr1 9075058 9075085 -233589268 + AT_rich Low_complexity Low_complexity 1 27 0 337 283 10 30 chr1 9077225 9077324 -233587029 - MER81 DNA DNA 0 114 18 394 283 118 56 chr1 9078137 9078528 -233585825 - L1MC4a LINE L1 -297 5824 5759 2186 107 0 0 chr1 9078528 9078837 -233585516 + AluY SINE Alu 1 309 -2 1325 163 57 43 chr1 9079570 9079852 -233584501 + AluJo SINE Alu 1 286 -26 237 33 0 0 chr1 9079852 9079882 -233584471 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr1 9080711 9080733 -233583620 + AT_rich Low_complexity Low_complexity 1 22 0 306 225 36 63 chr1 9080961 9081072 -233583281 + MIR3 SINE MIR 101 208 0 914 43 58 0 chr1 9131815 9131953 -233532400 - MER30 DNA MER1_type -80 150 5 363 248 0 117 chr1 9132127 9132264 -233532089 + L1MCa LINE L1 1996 2116 -4310 236 266 115 35 chr1 9132413 9132438 -233531915 - L2 LINE L2 -154 3118 3096 1795 134 0 0 chr1 9132438 9132692 -233531661 + AluSx SINE Alu 1 254 -58 236 266 115 35 chr1 9132692 9132779 -233531574 - L2 LINE L2 -176 3096 2997 764 248 6 81 chr1 9134208 9134474 -233529879 - MIR SINE MIR 0 262 17 222 261 43 0 chr1 9134550 9134619 -233529734 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 9134625 9134678 -233529675 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 222 240 40 40 chr1 9134683 9134758 -233529595 + MIR SINE MIR 74 148 -114 2191 110 3 0 chr1 9134760 9135060 -233529293 + AluSx SINE Alu 2 302 -10 2315 81 7 3 chr1 9135108 9135415 -233528938 + AluSx SINE Alu 4 311 -1 273 221 0 186 chr1 9135415 9135614 -233528739 - Charlie5 DNA MER1_type -62 2550 2389 230 217 22 0 chr1 9136379 9136425 -233527928 - L2 LINE L2 -15 3298 3252 2259 105 3 0 chr1 9136486 9136790 -233527563 + AluSx SINE Alu 1 305 -7 188 250 0 0 chr1 9136792 9136832 -233527521 + L2 LINE L2 3214 3253 -19 574 271 21 7 chr1 9137682 9137826 -233526527 - MIR3 SINE MIR -62 146 1 187 355 66 0 chr1 9137972 9138048 -233526305 + MIR3 SINE MIR 74 154 -54 242 287 0 11 chr1 9138202 9138296 -233526057 - MER113 DNA MER1_type? -394 127 35 288 209 25 106 chr1 9139152 9139328 -233525025 + MIR SINE MIR 11 250 -12 365 300 60 27 chr1 9139472 9139622 -233524731 + MIR3 SINE MIR 40 194 -14 341 287 117 21 chr1 9141076 9141275 -233523078 + MIR3 SINE MIR 5 215 -47 594 202 30 98 chr1 9141359 9141562 -233522791 - MER5A DNA MER1_type 0 189 1 328 325 28 0 chr1 9141919 9142034 -233522319 - MIR3 SINE MIR -39 169 51 1854 120 56 0 chr1 9142128 9142424 -233521929 + AluSx SINE Alu 1 311 0 188 289 145 12 chr1 9142983 9143066 -233521287 - MIR SINE MIR -93 115 22 1796 102 0 0 chr1 9143401 9143658 -233520695 + AluSg SINE Alu 48 304 0 300 290 243 22 chr1 9143788 9144335 -233520018 + L2 LINE L2 2643 3306 -7 645 267 42 42 chr1 9145464 9145704 -233518649 - MIR SINE MIR -19 243 4 2096 129 3 0 chr1 9147384 9147686 -233516667 + AluSx SINE Alu 1 303 -9 196 321 49 12 chr1 9148301 9148382 -233515971 - MIR SINE MIR -77 185 102 2144 117 7 7 chr1 9148469 9148776 -233515577 - AluSx SINE Alu -5 307 1 633 266 59 20 chr1 9148974 9149177 -233515176 - MER20B DNA MER1_type -8 211 1 371 329 99 0 chr1 9149183 9149400 -233514953 + Charlie8 DNA MER1_type 4 228 -2189 1713 167 3 48 chr1 9149593 9149724 -233514629 + AluJo SINE Alu 1 136 -176 1930 120 67 0 chr1 9149724 9150008 -233514345 + AluSq SINE Alu 1 303 -10 1713 167 3 48 chr1 9150008 9150188 -233514165 + AluJo SINE Alu 136 298 -14 251 222 0 0 chr1 9150188 9150233 -233514120 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 205 327 34 93 chr1 9150476 9150681 -233513672 - L2 LINE L2 -4 3268 3076 1796 135 66 0 chr1 9150965 9151254 -233513099 - AluSx SINE Alu -4 308 1 304 329 64 43 chr1 9151256 9151396 -233512957 + L2 LINE L2 3125 3267 -5 428 247 123 26 chr1 9152034 9152188 -233512165 - MIR SINE MIR -21 241 73 2430 71 3 0 chr1 9152616 9152925 -233511428 + AluY SINE Alu 1 310 -1 1181 183 190 15 chr1 9153073 9153336 -233511017 - AluJb SINE Alu -3 309 1 2364 90 0 3 chr1 9154004 9154314 -233510039 + AluSq SINE Alu 1 309 -4 2480 49 0 7 chr1 9154915 9155220 -233509133 - AluY SINE Alu -8 303 1 352 331 47 0 chr1 9156783 9156910 -233507443 - L3 LINE CR1 -11 1566 1434 448 214 10 0 chr1 9157591 9157689 -233506664 + MER81 DNA DNA 1 99 -15 190 278 113 31 chr1 9157915 9158012 -233506341 - MIR3 SINE MIR -5 203 99 1947 115 3 72 chr1 9158469 9158794 -233505559 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 9159645 9159667 -233504686 + GC_rich Low_complexity Low_complexity 1 22 0 308 293 13 0 chr1 9159949 9160024 -233504329 + L2 LINE L2 3186 3261 -11 1662 134 69 79 chr1 9160025 9160330 -233504023 + AluSx SINE Alu 1 302 -10 255 226 32 0 chr1 9160378 9160440 -233503913 + CT-rich Low_complexity Low_complexity 2 65 0 379 287 87 7 chr1 9160465 9160527 -233503826 + Charlie8 DNA MER1_type 21 77 -264 2325 106 0 3 chr1 9160527 9160829 -233503524 + AluSx SINE Alu 1 301 -11 379 287 87 7 chr1 9160829 9160916 -233503437 + Charlie8 DNA MER1_type 77 182 -159 698 270 74 5 chr1 9161007 9161196 -233503157 + MIR SINE MIR 51 252 -10 1527 165 0 0 chr1 9161201 9161431 -233502922 + AluJo SINE Alu 1 230 -82 2225 107 0 0 chr1 9161470 9161784 -233502569 + AluSx SINE Alu 1 314 0 2214 119 0 0 chr1 9163000 9163294 -233501059 - AluSx SINE Alu -18 294 1 313 272 119 0 chr1 9163318 9163402 -233500951 - MIR SINE MIR -63 145 55 870 144 0 8 chr1 9163810 9163942 -233500411 + AluJb SINE Alu 6 136 -176 1573 137 144 4 chr1 9163943 9164206 -233500147 + AluSx SINE Alu 3 302 0 335 292 186 40 chr1 9164319 9164545 -233499808 - L2 LINE L2 0 3272 3014 191 83 0 0 chr1 9164568 9164592 -233499761 + L2 LINE L2 3199 3222 -91 523 280 151 5 chr1 9165010 9165228 -233499125 + L2 LINE L2 2500 2749 -565 1962 152 7 0 chr1 9165230 9165526 -233498827 + AluSx SINE Alu 1 298 -14 1750 225 62 18 chr1 9165703 9166198 -233498155 + L2 LINE L2 2787 3307 -6 2269 113 3 6 chr1 9166198 9166509 -233497844 + AluSq SINE Alu 1 310 -3 1106 143 6 6 chr1 9166509 9166684 -233497669 + AluSq SINE Alu 126 300 -13 226 237 151 11 chr1 9166714 9166807 -233497546 + L1ME4a LINE L1 6005 6110 -11 602 295 133 26 chr1 9168095 9168441 -233495912 - L2 LINE L2 0 3313 2931 535 106 11 11 chr1 9168602 9168696 -233495657 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 2315 86 7 3 chr1 9168854 9169144 -233495209 + AluSx SINE Alu 1 291 -21 565 123 40 0 chr1 9169183 9169284 -233495069 - MER5A DNA MER1_type -80 102 4 1485 176 26 40 chr1 9169372 9169674 -233494679 + AluJo SINE Alu 2 299 -13 520 212 33 46 chr1 9169787 9169938 -233494415 + L2 LINE L2 2632 2780 -534 721 236 16 147 chr1 9169949 9170372 -233493981 + L2 LINE L2 2888 3255 -17 355 260 24 79 chr1 9170457 9170584 -233493769 + L2 LINE L2 3141 3260 -12 361 304 84 9 chr1 9170978 9171113 -233493240 + MIR SINE MIR 21 163 -45 1706 220 31 96 chr1 9171162 9171217 -233493136 + MER77 LTR ERV1 84 141 -464 938 99 0 57 chr1 9171217 9171358 -233492995 + FLAM_C SINE Alu 1 133 0 1706 220 31 96 chr1 9171358 9171503 -233492850 + MER77 LTR ERV1 141 294 -311 2260 118 3 0 chr1 9171503 9171808 -233492545 + AluSx SINE Alu 1 306 -6 1706 220 31 96 chr1 9171808 9171999 -233492354 + MER77 LTR ERV1 294 432 -173 6501 117 144 24 chr1 9171999 9173140 -233491213 + MER52C LTR ERV1 1 1278 0 1706 220 31 96 chr1 9173140 9173300 -233491053 + MER77 LTR ERV1 432 601 -4 232 276 29 48 chr1 9173356 9173401 -233490952 + MIR SINE MIR 146 190 -72 2068 137 0 37 chr1 9173401 9173537 -233490816 + AluSx SINE Alu 1 141 -171 2399 88 3 3 chr1 9173537 9173843 -233490510 + AluSg SINE Alu 1 306 -4 2068 137 0 37 chr1 9173843 9174027 -233490326 + AluSx SINE Alu 141 309 -3 232 276 29 48 chr1 9174027 9174086 -233490267 + MIR SINE MIR 190 248 -14 417 241 292 15 chr1 9174121 9174316 -233490037 + MIR SINE MIR 14 262 0 2272 76 0 54 chr1 9174745 9175061 -233489292 - AluSg1 SINE Alu -10 299 1 1807 149 0 14 chr1 9175285 9175566 -233488787 + AluJb SINE Alu 1 277 -35 278 105 0 0 chr1 9175566 9175604 -233488749 - Alu SINE Alu -261 38 1 2117 94 4 0 chr1 9175628 9175917 -233488436 + AluSx SINE Alu 16 305 0 1368 208 83 0 chr1 9175920 9176247 -233488106 - LTR37A LTR ERV1 -55 371 18 2055 133 3 10 chr1 9176300 9176601 -233487752 + AluSq SINE Alu 2 300 -13 511 14 0 56 chr1 9176605 9176676 -233487677 - AluJb SINE Alu -161 151 85 1989 159 0 3 chr1 9176812 9177107 -233487246 + AluJo SINE Alu 2 295 -17 360 281 84 94 chr1 9177126 9177376 -233486977 - L2 LINE L2 -338 2976 2728 2131 123 0 13 chr1 9177376 9177676 -233486677 - AluSx SINE Alu -14 298 3 360 281 84 94 chr1 9177676 9177745 -233486608 - L2 LINE L2 -586 2728 2660 776 271 95 7 chr1 9177840 9178146 -233486207 + L1ME3A LINE L1 5498 5830 -340 2301 109 3 0 chr1 9178150 9178452 -233485901 + AluSq SINE Alu 1 303 -10 1788 178 3 10 chr1 9179551 9179843 -233484510 + AluJo SINE Alu 1 290 -22 231 88 0 0 chr1 9179844 9179878 -233484475 + (GA)n Simple_repeat Simple_repeat 1 34 0 375 92 13 40 chr1 9179879 9179955 -233484398 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1964 168 0 0 chr1 9180847 9181144 -233483209 + AluJo SINE Alu 1 297 -15 2137 137 3 3 chr1 9181146 9181459 -233482894 + AluSq SINE Alu 1 313 0 1043 114 0 0 chr1 9181473 9181604 -233482749 + AluSg SINE Alu 1 131 -179 2117 104 10 0 chr1 9181861 9182150 -233482203 - AluY SINE Alu -19 292 1 2402 81 3 16 chr1 9182150 9182459 -233481894 - AluSq SINE Alu -8 305 1 2142 130 0 0 chr1 9182470 9182763 -233481590 - AluSx SINE Alu -19 293 1 200 296 56 0 chr1 9182772 9182826 -233481527 + L2 LINE L2 3002 3058 -214 619 281 0 18 chr1 9183113 9183284 -233481069 + LTR67 LTR ERVL 4 171 -386 463 264 88 7 chr1 9183551 9183699 -233480654 - L1ME1 LINE L1 -8 6158 5999 927 177 17 43 chr1 9183699 9183817 -233480536 - MER63 DNA MER1_type 0 1060 940 2542 43 0 20 chr1 9183817 9184116 -233480237 + AluY SINE Alu 1 293 -18 927 177 17 43 chr1 9184116 9184159 -233480194 - MER63 DNA MER1_type -120 940 897 1980 166 7 0 chr1 9184159 9184467 -233479886 + AluJb SINE Alu 1 310 -2 927 177 17 43 chr1 9184467 9184536 -233479817 - MER63 DNA MER1_type -163 897 835 279 0 0 0 chr1 9184542 9184573 -233479780 + (TTA)n Simple_repeat Simple_repeat 2 32 0 699 195 0 9 chr1 9184576 9184689 -233479664 - FLAM_C SINE Alu -26 117 6 2279 181 12 2 chr1 9184691 9185104 -233479249 - MER63 DNA MER1_type -212 849 433 670 228 37 7 chr1 9185104 9185314 -233479039 - MER110A LTR ERV1 0 468 272 2597 61 7 0 chr1 9185314 9185624 -233478729 + AluSx SINE Alu 1 312 0 597 228 8 8 chr1 9185759 9185886 -233478467 + L2 LINE L2 3187 3313 0 322 358 25 31 chr1 9185904 9186066 -233478287 - L2 LINE L2 -218 3054 2894 211 323 85 49 chr1 9186051 9186215 -233478138 + MIR SINE MIR 14 183 -79 * 1159 119 0 0 chr1 9186287 9186438 -233477915 + AluSq/x SINE Alu 1 151 -162 1766 179 7 16 chr1 9186814 9187121 -233477232 + AluJo SINE Alu 1 304 -8 594 0 0 0 chr1 9187121 9187187 -233477166 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 207 69 0 0 chr1 9187186 9187215 -233477138 + (CAAGC)n Simple_repeat Simple_repeat 2 30 0 * 1929 130 0 7 chr1 9187219 9187488 -233476865 + AluSx SINE Alu 13 279 -33 186 43 0 0 chr1 9187488 9187511 -233476842 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 389 309 40 34 chr1 9187592 9187741 -233476612 - MIR SINE MIR -74 188 39 328 303 11 68 chr1 9187886 9188062 -233476291 + L1ME LINE L1 5350 5515 -655 211 270 180 34 chr1 9188148 9188237 -233476116 + MIR SINE MIR 123 224 -38 275 167 154 26 chr1 9188269 9188347 -233476006 + L2 LINE L2 3188 3275 -38 1914 118 0 18 chr1 9188477 9188581 -233475772 + AluSx SINE Alu 33 137 -175 2280 101 0 7 chr1 9188581 9188887 -233475466 + AluSx SINE Alu 1 304 -8 1914 118 0 18 chr1 9188887 9189054 -233475299 + AluSx SINE Alu 137 299 -13 1836 139 0 94 chr1 9189056 9189395 -233474958 + AluJb SINE Alu 1 307 -5 1963 112 23 3 chr1 9189421 9189724 -233474629 - AluSg SINE Alu -1 309 1 240 91 0 0 chr1 9189724 9189757 -233474596 - MER58 DNA MER1_type -32 2388 2356 288 221 104 0 chr1 9189769 9189846 -233474507 - MER58 DNA MER1_type -110 231 147 1788 169 27 3 chr1 9189848 9190143 -233474210 - AluSg SINE Alu -8 302 1 651 234 50 0 chr1 9190164 9190305 -233474048 - AluJb SINE Alu -23 289 142 354 290 25 6 chr1 9190446 9190608 -233473745 + (CA)n Simple_repeat Simple_repeat 2 166 0 427 302 13 0 chr1 9190648 9190797 -233473556 + (CA)n Simple_repeat Simple_repeat 2 152 0 421 321 12 2 chr1 9190851 9191362 -233472991 + (CA)n Simple_repeat Simple_repeat 1 516 0 260 256 22 0 chr1 9191390 9191578 -233472775 + (CA)n Simple_repeat Simple_repeat 1 192 0 275 272 123 21 chr1 9193390 9193818 -233470535 + L1ME LINE L1 5189 5671 -450 311 280 75 9 chr1 9193838 9193945 -233470408 + L1M4 LINE L1 3016 3129 -3017 * 554 346 97 29 chr1 9193942 9194486 -233469867 - L1 LINE L1 -3261 2885 2305 241 161 71 0 chr1 9194487 9194543 -233469810 - FAM SINE Alu 0 179 120 1081 180 10 15 chr1 9194543 9194749 -233469604 - AluJo SINE Alu -107 205 1 586 228 183 13 chr1 9195060 9195317 -233469036 - L1ME3 LINE L1 -1 6163 5876 1600 56 9 56 chr1 9195424 9195640 -233468713 - AluY SINE Alu -50 261 56 486 309 66 37 chr1 9195650 9196000 -233468353 + L1ME LINE L1 75 434 -5636 1228 297 80 54 chr1 9196236 9197237 -233467116 + L1ME LINE L1 570 1609 -4652 4066 116 7 0 chr1 9197237 9197787 -233466566 - MER41A LTR ERV1 0 554 1 1228 297 80 54 chr1 9197787 9198018 -233466335 + L1ME LINE L1 1609 1833 -4428 2108 140 0 0 chr1 9198024 9198316 -233466037 - AluSx SINE Alu -16 296 5 285 231 102 0 chr1 9198417 9198525 -233465828 + L1ME LINE L1 1842 1960 -4301 23 0 0 0 chr1 9198594 9198617 -233465736 + AT_rich Low_complexity Low_complexity 1 23 0 445 239 341 0 chr1 9198634 9198810 -233465543 - MIR SINE MIR -24 238 3 374 147 28 6 chr1 9198894 9199007 -233465346 - MLT2F LTR ERVL 0 663 479 2359 107 0 0 chr1 9199091 9199399 -233464954 - AluSg1 SINE Alu -1 308 1 580 330 122 42 chr1 9199406 9199948 -233464405 - L1M4 LINE L1 -1467 4679 4095 333 315 0 0 chr1 9200084 9200176 -233464177 - L2 LINE L2 0 3313 3222 186 71 0 0 chr1 9200518 9200546 -233463807 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2024 119 0 11 chr1 9200546 9200832 -233463521 - AluSx SINE Alu -29 283 1 1865 180 0 19 chr1 9201000 9201317 -233463036 - AluJb SINE Alu -1 311 1 1492 252 225 21 chr1 9201317 9202190 -233462163 - L2 LINE L2 -9 3304 2239 1045 195 20 76 chr1 9202190 9202493 -233461860 + L1MC4 LINE L1 7756 8041 -1 546 216 37 6 chr1 9202489 9202651 -233461702 + L1ME4a LINE L1 1615 1781 -4615 * 252 151 132 0 chr1 9202870 9202923 -233461430 - Charlie1 DNA MER1_type -4 2757 2698 587 251 120 0 chr1 9202923 9203098 -233461255 + L1MC4a LINE L1 7089 7284 -524 923 253 101 29 chr1 9203111 9203433 -233460920 + L1ME4a LINE L1 2134 2431 -3784 1866 124 87 0 chr1 9203433 9203708 -233460645 + AluSx SINE Alu 1 299 -13 923 253 101 29 chr1 9203708 9203990 -233460363 + L1ME4a LINE L1 2431 2737 -3478 944 245 162 10 chr1 9203998 9204312 -233460041 + L1ME4a LINE L1 5444 5805 -434 317 247 71 0 chr1 9204332 9204417 -233459936 + L1ME4a LINE L1 5866 5956 -283 639 85 47 0 chr1 9204523 9204629 -233459724 + Tigger7 DNA MER2_type 412 522 -1965 465 182 0 82 chr1 9204611 9204721 -233459632 + Tigger7 DNA MER2_type 2387 2487 0 * 27 29 0 0 chr1 9204757 9204791 -233459562 + AT_rich Low_complexity Low_complexity 1 34 0 1425 120 37 14 chr1 9205148 9205245 -233459108 - AluJo SINE Alu -91 221 128 297 0 0 0 chr1 9205245 9205278 -233459075 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1425 120 37 14 chr1 9205278 9205396 -233458957 - AluJo SINE Alu -184 128 1 317 255 142 7 chr1 9205396 9205537 -233458816 - L1ME LINE L1 -429 5692 5533 303 321 42 1 chr1 9205702 9205850 -233458503 + MIR SINE MIR 12 165 -60 199 247 112 11 chr1 9205959 9206048 -233458305 + MIR SINE MIR 165 262 0 367 240 10 30 chr1 9206053 9206153 -233458200 + L1ME4a LINE L1 6083 6180 -10 378 0 0 0 chr1 9207319 9207361 -233456992 + (TG)n Simple_repeat Simple_repeat 1 42 0 186 268 0 18 chr1 9207589 9207645 -233456708 + MIR SINE MIR 93 147 -61 268 340 35 28 chr1 9212265 9212406 -233451947 + MIR3 SINE MIR 22 163 -45 2264 78 0 3 chr1 9215822 9216117 -233448236 + AluSq SINE Alu 1 294 -19 2227 110 0 3 chr1 9216119 9216428 -233447925 + AluSx SINE Alu 1 308 -4 817 95 32 8 chr1 9216536 9216662 -233447691 + AluYb8 SINE Alu 1 129 -189 2356 92 0 0 chr1 9216664 9216969 -233447384 + AluSq SINE Alu 1 305 -8 250 303 129 28 chr1 9219706 9219884 -233444469 - L2 LINE L2 -1 3271 3076 1400 169 50 29 chr1 9220038 9220317 -233444036 + AluJo SINE Alu 20 304 -8 221 348 37 30 chr1 9220656 9220791 -233443562 + L2 LINE L2 3031 3166 -106 207 386 55 8 chr1 9221150 9221277 -233443076 - L2 LINE L2 -219 3053 2921 1056 262 98 27 chr1 9221755 9222163 -233442190 - MLT1J LTR MaLR 0 511 75 3530 204 44 40 chr1 9222542 9223669 -233440684 - L1ME2 LINE L1 0 6164 5039 1247 149 0 0 chr1 9223670 9223865 -233440488 - AluJb SINE Alu -30 282 88 756 234 26 48 chr1 9223883 9224064 -233440289 - L1ME2 LINE L1 -1113 5033 4856 2339 94 0 0 chr1 9224064 9224371 -233439982 + AluSq SINE Alu 1 307 -6 756 234 26 48 chr1 9224371 9224416 -233439937 - L1ME2 LINE L1 -1290 4856 4812 21 0 0 0 chr1 9224416 9224437 -233439916 + AT_rich Low_complexity Low_complexity 1 21 0 2659 214 22 5 chr1 9224443 9224998 -233439355 - L1MB8 LINE L1 -14 6164 5601 1146 204 23 87 chr1 9225033 9225290 -233439063 - L1ME1 LINE L1 -3 6443 6207 2201 110 0 0 chr1 9225290 9225598 -233438755 + AluSx SINE Alu 4 311 -1 1146 204 23 87 chr1 9225598 9225754 -233438599 - L1ME1 LINE L1 -239 6207 6043 210 188 58 0 chr1 9225754 9225823 -233438530 + (TA)n Simple_repeat Simple_repeat 1 73 0 388 240 39 10 chr1 9225855 9225959 -233438394 - L1ME1 LINE L1 -1024 5402 5296 318 269 0 77 chr1 9225989 9226093 -233438260 - L1ME1 LINE L1 -4336 2090 1995 2197 80 3 38 chr1 9226156 9226469 -233437884 - AluSp SINE Alu -3 310 9 210 305 17 0 chr1 9226530 9226589 -233437764 + CT-rich Low_complexity Low_complexity 1 60 0 254 271 36 100 chr1 9226590 9226649 -233437704 - MER58C DNA MER1_type -84 131 70 1825 107 9 79 chr1 9226649 9226967 -233437386 + AluSx SINE Alu 1 296 -16 254 271 36 100 chr1 9226967 9227047 -233437306 - MER58C DNA MER1_type -145 70 1 2534 193 37 19 chr1 9227054 9228006 -233436347 - L1ME LINE L1 -378 5786 4817 702 317 160 24 chr1 9230979 9231478 -233432875 + L1MC/D LINE L1 5254 5820 -1988 1615 150 66 0 chr1 9232519 9232806 -233431547 + 7SLRNA srpRNA srpRNA 1 306 -14 567 256 180 14 chr1 9234439 9234650 -233429703 + MIR SINE MIR 1 246 -16 2165 100 7 0 chr1 9234999 9235298 -233429055 - AluSx SINE Alu -11 301 1 2217 88 0 31 chr1 9235507 9235826 -233428527 + AluY SINE Alu 1 309 -2 1517 168 27 30 chr1 9235853 9235975 -233428378 + AluJb SINE Alu 3 124 -188 369 0 0 0 chr1 9235975 9236016 -233428337 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 1517 168 27 30 chr1 9236016 9236190 -233428163 + AluJb SINE Alu 124 298 -14 2022 116 0 49 chr1 9236190 9236517 -233427836 + AluSx SINE Alu 1 312 0 22 0 0 0 chr1 9236868 9236890 -233427463 + AT_rich Low_complexity Low_complexity 1 22 0 2254 105 0 0 chr1 9237023 9237328 -233427025 - AluSg SINE Alu -5 305 1 633 208 8 0 chr1 9240712 9240832 -233423521 + MIR SINE MIR 56 176 -86 326 264 170 63 chr1 9242601 9242760 -233421593 - L1MC5 LINE L1 -164 7797 7622 429 180 33 107 chr1 9243565 9243607 -233420746 - MER81 DNA DNA 0 114 70 2200 98 10 0 chr1 9243607 9243914 -233420439 - AluSx SINE Alu 0 312 3 429 180 33 107 chr1 9243914 9243993 -233420360 - MER81 DNA DNA -44 70 2 240 149 0 0 chr1 9245482 9245529 -233418824 + (GGA)n Simple_repeat Simple_repeat 2 48 0 282 29 0 0 chr1 9245867 9245902 -233418451 + (CCCCAG)n Simple_repeat Simple_repeat 3 37 0 26 64 0 0 chr1 9252339 9252386 -233411967 + AT_rich Low_complexity Low_complexity 1 47 0 378 270 33 19 chr1 9252510 9252637 -233411716 - L1MC4 LINE L1 -1339 6983 1994 21 57 0 0 chr1 9254302 9254337 -233410016 + GC_rich Low_complexity Low_complexity 1 35 0 265 139 25 63 chr1 9254478 9254557 -233409796 + G-rich Low_complexity Low_complexity 5 80 0 2167 115 0 6 chr1 9254886 9255200 -233409153 + AluSx SINE Alu 1 312 0 1221 57 11 11 chr1 9255225 9255401 -233408952 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 1358 174 70 40 chr1 9255414 9255712 -233408641 + AluJo SINE Alu 1 307 -5 844 177 61 0 chr1 9255712 9255876 -233408477 + AluJb SINE Alu 139 312 0 327 85 0 0 chr1 9255876 9255923 -233408430 + (GA)n Simple_repeat Simple_repeat 1 47 0 477 50 0 0 chr1 9255923 9255983 -233408370 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 935 231 27 60 chr1 9256154 9256452 -233407901 + Charlie4 DNA MER1_type 1 288 -1673 1823 78 0 0 chr1 9256479 9256709 -233407644 + AluSx SINE Alu 1 230 -82 182 296 0 0 chr1 9257282 9257326 -233407027 - MIR SINE MIR 0 262 219 24 60 0 30 chr1 9257326 9257350 -233407003 + AT_rich Low_complexity Low_complexity 1 24 -41 2135 108 0 10 chr1 9257350 9257638 -233406715 + AluSq SINE Alu 1 285 -28 202 74 0 0 chr1 9257638 9257665 -233406688 + (TAAA)n Simple_repeat Simple_repeat 2 108 0 24 60 0 30 chr1 9257665 9257706 -233406647 + AT_rich Low_complexity Low_complexity 24 65 0 2226 94 85 51 chr1 9257716 9258068 -233406285 - THE1B LTR MaLR 0 364 1 1857 159 7 10 chr1 9258327 9258629 -233405724 + AluJb SINE Alu 1 301 -11 2178 110 3 10 chr1 9258962 9259270 -233405083 - AluSx SINE Alu 0 312 7 741 244 119 83 chr1 9259321 9259499 -233404854 - L2 LINE L2 -925 2389 2219 1170 226 78 10 chr1 9259499 9259795 -233404558 + MER33 DNA MER1_type 5 320 -4 741 244 119 83 chr1 9259795 9259828 -233404525 - L2 LINE L2 -1095 2219 2189 2074 138 0 0 chr1 9259828 9260124 -233404229 + AluJb SINE Alu 1 296 -16 741 244 119 83 chr1 9260124 9260383 -233403970 - L2 LINE L2 -1125 2189 1901 217 354 13 13 chr1 9260431 9260510 -233403843 - L2 LINE L2 -52 3220 3142 264 228 76 13 chr1 9260772 9260851 -233403502 - MIR SINE MIR -177 85 2 2052 104 0 31 chr1 9260917 9261233 -233403120 - AluSg SINE Alu 0 307 1 1591 167 10 33 chr1 9261235 9261535 -233402818 - AluJb SINE Alu -19 293 1 275 250 70 86 chr1 9261552 9261680 -233402673 + MIR SINE MIR 18 143 -65 457 328 79 11 chr1 9262576 9262765 -233401588 - MIR SINE MIR -11 251 50 268 259 49 12 chr1 9263018 9263099 -233401254 + MIR SINE MIR 104 187 -75 191 274 44 80 chr1 9263188 9263301 -233401052 + MIR3 SINE MIR 98 206 -2 2065 145 0 0 chr1 9263455 9263766 -233400587 + AluSx SINE Alu 1 311 -1 2246 101 0 0 chr1 9264055 9264353 -233400000 - AluSx SINE Alu -14 298 1 909 269 76 64 chr1 9264547 9265127 -233399226 - L1ME4a LINE L1 -1 6120 5534 201 184 0 0 chr1 9265815 9265853 -233398500 + MIR3 SINE MIR 160 197 -11 340 258 136 104 chr1 9266926 9267213 -233397140 + L2 LINE L2 2832 3127 -145 2461 80 0 0 chr1 9267281 9267592 -233396761 - AluSx SINE Alu -1 311 1 753 276 81 0 chr1 9267612 9267822 -233396531 + MIR SINE MIR 36 262 0 2283 78 3 0 chr1 9268286 9268580 -233395773 + AluSq SINE Alu 1 295 -18 292 254 41 107 chr1 9268683 9268805 -233395548 - MIR SINE MIR -75 133 20 611 232 7 0 chr1 9269071 9269359 -233394994 + (TCCA)n Simple_repeat Simple_repeat 1 290 0 810 174 0 0 chr1 9269397 9269569 -233394784 + (TCCA)n Simple_repeat Simple_repeat 2 173 0 288 240 10 83 chr1 9269569 9269665 -233394688 - L2 LINE L2 0 3272 3184 415 315 0 15 chr1 9269756 9269886 -233394467 + MIR3 SINE MIR 31 158 -50 747 283 50 5 chr1 9270777 9270996 -233393357 + MIR SINE MIR 33 261 -1 218 333 39 0 chr1 9271014 9271092 -233393261 + MIR3 SINE MIR 106 186 -22 622 277 151 5 chr1 9272834 9273040 -233391313 + MIR SINE MIR 27 262 0 236 410 14 14 chr1 9273300 9273439 -233390914 + L2 LINE L2 3134 3272 0 1460 89 0 11 chr1 9273720 9273911 -233390442 + AluSx SINE Alu 1 189 -123 502 253 195 0 chr1 9274008 9274182 -233390171 + MIR SINE MIR 48 255 -7 194 81 27 0 chr1 9274182 9274219 -233390134 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2168 97 0 7 chr1 9274219 9274508 -233389845 - AluSq SINE Alu -26 287 1 268 305 34 38 chr1 9274723 9274881 -233389472 - MIR SINE MIR -62 146 3 391 313 8 16 chr1 9275420 9275548 -233388805 - MIR SINE MIR -45 217 91 221 345 0 46 chr1 9275539 9275626 -233388727 + L2 LINE L2 3189 3271 -1 * 499 346 33 33 chr1 9275669 9275912 -233388441 - MIR SINE MIR -15 247 5 202 263 63 42 chr1 9276661 9276756 -233387597 - MIR3 SINE MIR -104 104 8 * 772 259 78 9 chr1 9276696 9276928 -233387425 + MIR SINE MIR 11 258 -4 428 255 19 0 chr1 9277009 9277115 -233387238 - MER81 DNA DNA -1 113 6 234 313 108 0 chr1 9277704 9277787 -233386566 - MIR SINE MIR -60 202 111 295 300 194 50 chr1 9278316 9278476 -233385877 - MIR SINE MIR -44 218 36 484 289 69 39 chr1 9278510 9278714 -233385639 + MIR SINE MIR 18 227 -35 180 347 124 4 chr1 9279390 9279615 -233384738 + L2 LINE L2 2723 2974 -340 195 135 19 115 chr1 9279814 9279866 -233384487 - L2 LINE L2 0 3313 3267 195 319 44 35 chr1 9279982 9280095 -233384258 + L2 LINE L2 3141 3254 -18 2130 106 0 0 chr1 9280126 9280581 -233383772 - AluSx SINE Alu 0 455 1 679 279 90 21 chr1 9281328 9281561 -233382792 + MIR SINE MIR 2 250 -12 215 228 0 35 chr1 9281912 9281969 -233382384 + G-rich Low_complexity Low_complexity 2 56 0 195 314 57 29 chr1 9282255 9282360 -233381993 + MIR SINE MIR 85 192 -70 373 220 189 30 chr1 9282579 9282711 -233381642 - MIR3 SINE MIR -53 155 3 189 0 0 0 chr1 9283332 9283353 -233381000 + (CGG)n Simple_repeat Simple_repeat 3 23 0 39 74 0 0 chr1 9283357 9283438 -233380915 + GC_rich Low_complexity Low_complexity 1 81 0 240 35 0 0 chr1 9286401 9286430 -233377923 + (GGA)n Simple_repeat Simple_repeat 3 31 0 272 257 0 0 chr1 9286452 9286526 -233377827 + A-rich Low_complexity Low_complexity 1 74 0 218 273 15 0 chr1 9288546 9288612 -233375741 + L2 LINE L2 3247 3313 0 2402 42 7 0 chr1 9289365 9289652 -233374701 + AluY SINE Alu 1 289 -22 204 214 0 0 chr1 9291208 9291250 -233373103 + G-rich Low_complexity Low_complexity 3 44 0 231 36 0 0 chr1 9293980 9294008 -233370345 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 206 234 0 62 chr1 9294072 9294136 -233370217 + G-rich Low_complexity Low_complexity 5 64 0 37 0 0 0 chr1 9294480 9294517 -233369836 + AT_rich Low_complexity Low_complexity 1 37 0 200 98 0 24 chr1 9295430 9295471 -233368882 + (CGGGGG)n Simple_repeat Simple_repeat 4 43 0 290 311 66 0 chr1 9296454 9296576 -233367777 + L2 LINE L2 3143 3272 0 253 323 40 0 chr1 9296867 9296991 -233367362 - MER3 DNA MER1_type -70 139 11 357 376 44 6 chr1 9300338 9300519 -233363834 + MIR SINE MIR 61 248 -14 276 30 0 0 chr1 9300895 9300928 -233363425 + (CCCCAG)n Simple_repeat Simple_repeat 4 36 0 212 356 0 0 chr1 9301724 9301842 -233362511 + GA-rich Low_complexity Low_complexity 2 119 0 921 126 0 15 chr1 9302114 9302249 -233362104 - FLAM_C SINE Alu 0 133 1 21 57 0 0 chr1 9304817 9304852 -233359501 + AT_rich Low_complexity Low_complexity 1 35 0 349 237 12 0 chr1 9305485 9305654 -233358699 + (CA)n Simple_repeat Simple_repeat 2 172 0 256 230 22 11 chr1 9305670 9305848 -233358505 + (CA)n Simple_repeat Simple_repeat 1 180 0 509 272 17 0 chr1 9305875 9306048 -233358305 + (CA)n Simple_repeat Simple_repeat 1 176 0 376 256 17 4 chr1 9306114 9306478 -233357875 + (CA)n Simple_repeat Simple_repeat 1 368 0 203 249 11 11 chr1 9306554 9306731 -233357622 + (CA)n Simple_repeat Simple_repeat 2 178 0 223 141 31 0 chr1 9306804 9306868 -233357485 + (CA)n Simple_repeat Simple_repeat 2 67 0 180 0 0 0 chr1 9308081 9308101 -233356252 + (TCTCC)n Simple_repeat Simple_repeat 4 23 0 233 231 0 19 chr1 9308873 9308925 -233355428 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr1 9308925 9308945 -233355408 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 396 319 139 28 chr1 9309746 9309962 -233354391 + L2 LINE L2 3033 3272 0 250 264 88 48 chr1 9310044 9310169 -233354184 - MIR SINE MIR -119 143 14 210 143 0 0 chr1 9310901 9310936 -233353417 + (CA)n Simple_repeat Simple_repeat 2 36 0 246 314 12 0 chr1 9310970 9311056 -233353297 - L2 LINE L2 -19 3294 3208 201 333 106 24 chr1 9313254 9313377 -233350976 - MIR SINE MIR -81 181 49 211 208 19 0 chr1 9316566 9316619 -233347734 + (CCCG)n Simple_repeat Simple_repeat 1 54 0 204 40 0 0 chr1 9325008 9325033 -233339320 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2056 121 0 0 chr1 9325035 9325317 -233339036 - AluSx SINE Alu -30 282 1 227 286 218 42 chr1 9325509 9325817 -233338536 + L2 LINE L2 2908 3269 -3 367 177 188 10 chr1 9328693 9328789 -233335564 + MER81 DNA DNA 2 114 0 195 129 0 0 chr1 9333097 9333128 -233331225 + (GGA)n Simple_repeat Simple_repeat 2 32 0 263 308 111 17 chr1 9333961 9334078 -233330275 - L3 LINE CR1 -60 1517 1390 227 100 0 25 chr1 9335179 9335219 -233329134 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 234 0 0 0 chr1 9337614 9337640 -233326713 + (A)n Simple_repeat Simple_repeat 1 26 0 24 77 0 0 chr1 9338116 9338168 -233326185 + GC_rich Low_complexity Low_complexity 1 52 0 28 99 0 0 chr1 9338267 9338358 -233325995 + GC_rich Low_complexity Low_complexity 1 91 0 31 26 0 0 chr1 9338733 9338771 -233325582 + GC_rich Low_complexity Low_complexity 1 38 0 672 119 0 0 chr1 9343366 9343484 -233320869 + (GA)n Simple_repeat Simple_repeat 2 119 0 333 0 0 0 chr1 9343484 9343521 -233320832 + (CA)n Simple_repeat Simple_repeat 2 38 0 305 308 138 71 chr1 9344007 9344127 -233320226 + MIR SINE MIR 22 133 -129 1259 159 9 0 chr1 9344127 9344341 -233320012 + L1MB7 LINE L1 5969 6184 0 305 308 138 71 chr1 9344341 9344444 -233319909 + MIR SINE MIR 133 260 -2 294 73 0 0 chr1 9346349 9346390 -233317963 + (GA)n Simple_repeat Simple_repeat 1 41 0 204 291 182 27 chr1 9346888 9346998 -233317355 - MIR SINE MIR -79 183 57 871 198 0 55 chr1 9347118 9347320 -233317033 - MER58A DNA MER1_type 0 224 34 182 320 16 82 chr1 9351461 9351583 -233312770 - MIR3 SINE MIR -47 161 48 269 329 0 0 chr1 9352162 9352241 -233312112 + GA-rich Low_complexity Low_complexity 4 82 0 235 254 8 49 chr1 9352335 9352457 -233311896 + G-rich Low_complexity Low_complexity 2 118 0 342 156 0 0 chr1 9352994 9353058 -233311295 + GA-rich Low_complexity Low_complexity 2 65 0 213 314 71 0 chr1 9354175 9354245 -233310108 - L2 LINE L2 -10 3262 3188 2172 113 13 0 chr1 9354256 9354556 -233309797 + AluSx SINE Alu 1 304 -8 382 283 32 34 chr1 9354571 9354707 -233309646 + MIR SINE MIR 37 170 -61 285 254 127 36 chr1 9354710 9354820 -233309533 - L2 LINE L2 -5 3308 3189 260 246 0 0 chr1 9354841 9354898 -233309455 + MIR SINE MIR 206 262 0 2174 187 29 55 chr1 9354940 9355467 -233308886 + L1MB5 LINE L1 5626 6166 -17 2141 117 0 0 chr1 9355467 9355757 -233308596 + AluSq SINE Alu 1 290 -23 285 29 0 0 chr1 9355762 9355796 -233308557 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 2174 187 29 55 chr1 9355796 9355847 -233308506 + L1MB5 LINE L1 6170 6183 0 192 97 0 0 chr1 9356694 9356725 -233307628 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2226 102 3 7 chr1 9357429 9357734 -233306619 + AluSx SINE Alu 2 305 -7 226 250 75 50 chr1 9357751 9357871 -233306482 - MIR SINE MIR -133 129 7 443 215 0 43 chr1 9358891 9359077 -233305276 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 276 275 0 33 chr1 9359093 9359275 -233305078 + (CACCC)n Simple_repeat Simple_repeat 1 176 0 424 235 0 39 chr1 9359354 9359719 -233304634 + (CACCC)n Simple_repeat Simple_repeat 1 350 0 195 42 0 0 chr1 9360785 9360809 -233303544 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 282 272 194 7 chr1 9361429 9361576 -233302777 - MIR SINE MIR -59 149 13 24 0 0 0 chr1 9361756 9361780 -233302573 + AT_rich Low_complexity Low_complexity 1 24 0 328 103 0 59 chr1 9362272 9362340 -233302013 - AluSq SINE Alu -1 301 238 1630 125 0 20 chr1 9362373 9362621 -233301732 - AluSq SINE Alu -70 243 1 448 374 27 0 chr1 9363479 9363666 -233300687 + MIR SINE MIR 40 231 -31 262 248 208 0 chr1 9369404 9369505 -233294848 - MIR SINE MIR 0 262 141 231 146 0 0 chr1 9369507 9369548 -233294805 + (CTA)n Simple_repeat Simple_repeat 3 43 0 322 312 39 19 chr1 9369560 9369714 -233294639 - MIR SINE MIR -2 260 104 33 0 0 0 chr1 9371990 9372023 -233292330 + AT_rich Low_complexity Low_complexity 1 33 0 194 133 0 44 chr1 9372490 9372535 -233291818 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 417 301 102 6 chr1 9372973 9373211 -233291142 + Charlie1a DNA MER1_type 2 268 -1187 2095 104 3 0 chr1 9373211 9373498 -233290855 - AluSx SINE Alu -4 308 21 988 129 0 0 chr1 9373507 9373669 -233290684 - AluSx SINE Alu 0 307 146 563 44 0 0 chr1 9373669 9373737 -233290616 - AluSx SINE Alu -245 68 1 3523 194 72 81 chr1 9373742 9374229 -233290124 + Charlie1a DNA MER1_type 264 754 -2007 2157 114 0 0 chr1 9374229 9374519 -233289834 + AluSg SINE Alu 1 290 -20 3523 194 72 81 chr1 9374519 9374704 -233289649 + Charlie1a DNA MER1_type 754 939 -1822 1870 163 3 6 chr1 9374704 9375017 -233289336 + AluJb SINE Alu 1 312 0 3523 194 72 81 chr1 9375017 9375446 -233288907 + Charlie1a DNA MER1_type 939 1357 -1404 2187 107 13 0 chr1 9375446 9375745 -233288608 + AluSx SINE Alu 1 303 -9 3523 194 72 81 chr1 9375745 9375844 -233288509 + Charlie1a DNA MER1_type 1357 1455 0 402 390 26 40 chr1 9376847 9377119 -233287234 - L2 LINE L2 -5 3267 3000 621 280 109 25 chr1 9377130 9377369 -233286984 + MIR SINE MIR 2 260 -2 228 135 0 0 chr1 9378060 9378097 -233286256 + (GA)n Simple_repeat Simple_repeat 2 38 0 251 325 42 17 chr1 9379819 9379939 -233284414 - MER5A DNA MER1_type -66 123 1 268 271 125 0 chr1 9379944 9380040 -233284313 - MIR SINE MIR -106 156 49 236 358 65 16 chr1 9380084 9380207 -233284146 - L2 LINE L2 -37 3235 3107 495 330 112 32 chr1 9381364 9381649 -233282704 - L2 LINE L2 -1 3312 3005 234 0 0 0 chr1 9382322 9382348 -233282005 + (T)n Simple_repeat Simple_repeat 1 26 0 426 342 38 8 chr1 9383473 9383669 -233280684 - MIR SINE MIR -35 227 25 189 279 44 15 chr1 9383766 9383834 -233280519 + MIR3 SINE MIR 114 183 -25 1870 152 0 29 chr1 9384074 9384390 -233279963 + AluJo SINE Alu 5 311 -1 1858 122 50 0 chr1 9384408 9384686 -233279667 - AluSx SINE Alu -20 292 1 206 121 0 0 chr1 9385184 9385217 -233279136 + (TA)n Simple_repeat Simple_repeat 1 33 0 2266 106 0 3 chr1 9386105 9386408 -233277945 + AluSx SINE Alu 1 302 -10 192 77 0 0 chr1 9387254 9387280 -233277073 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 982 204 11 0 chr1 9388891 9389067 -233275286 + MER45A DNA AcHobo 1 178 0 254 348 30 80 chr1 9389072 9389273 -233275080 + MIR SINE MIR 28 218 -44 180 286 48 16 chr1 9389445 9389508 -233274845 - MIR SINE MIR -117 145 81 2454 47 0 7 chr1 9391221 9391521 -233272832 - AluY SINE Alu -13 298 1 266 314 215 26 chr1 9391817 9392008 -233272345 - MIR SINE MIR -15 247 21 2217 92 0 7 chr1 9392657 9392950 -233271403 - AluSc SINE Alu -18 291 1 1415 157 79 59 chr1 9393666 9393971 -233270382 - AluJo SINE Alu -1 311 1 299 283 29 92 chr1 9393972 9394021 -233270332 + MIR SINE MIR 101 152 -110 2161 100 3 28 chr1 9394021 9394340 -233270013 + AluSx SINE Alu 1 311 -1 299 283 29 92 chr1 9394340 9394463 -233269890 + MIR SINE MIR 152 262 0 242 54 0 27 chr1 9394472 9394509 -233269844 + (TTA)n Simple_repeat Simple_repeat 2 37 0 896 164 10 70 chr1 9396095 9396157 -233268196 - MER53 DNA DNA 0 189 125 2127 101 0 3 chr1 9396157 9396467 -233267886 + AluSq SINE Alu 1 309 0 896 164 10 70 chr1 9396467 9396604 -233267749 - MER53 DNA DNA -64 125 1 762 252 118 50 chr1 9397257 9397818 -233266535 + L2 LINE L2 2710 3309 -4 715 310 139 20 chr1 9400672 9400909 -233263444 + L2 LINE L2 2439 2647 -666 2276 114 0 0 chr1 9400909 9401215 -233263138 + AluSx SINE Alu 1 306 -6 715 310 139 20 chr1 9401215 9401694 -233262659 + L2 LINE L2 2647 3243 -70 2392 100 0 0 chr1 9401724 9402035 -233262318 - AluSx SINE Alu -1 311 1 380 325 140 13 chr1 9403772 9403929 -233260424 - MIR3 SINE MIR -11 197 21 290 322 89 20 chr1 9406697 9406843 -233257510 + MIR3 SINE MIR 28 183 -25 381 361 30 0 chr1 9407028 9407161 -233257192 + L2 LINE L2 3106 3242 -30 2230 110 0 0 chr1 9407266 9407566 -233256787 - AluSx SINE Alu -12 300 1 193 343 14 14 chr1 9407714 9407784 -233256569 - L2 LINE L2 -9 3263 3194 414 364 66 0 chr1 9407844 9408042 -233256311 - MIR SINE MIR -24 238 28 216 0 0 0 chr1 9409608 9409632 -233254721 + (CA)n Simple_repeat Simple_repeat 1 24 0 957 247 18 5 chr1 9409659 9409878 -233254475 + MIR SINE MIR 2 223 -39 191 297 34 109 chr1 9410132 9410307 -233254046 - MIR SINE MIR -30 232 71 2062 116 0 0 chr1 9411603 9411921 -233252432 - AluSx SINE Alu 0 318 1 2252 96 3 0 chr1 9412262 9412564 -233251789 + AluSx SINE Alu 1 303 -9 613 191 17 0 chr1 9412686 9412801 -233251552 + MER3 DNA MER1_type 52 168 -41 2205 93 3 0 chr1 9412930 9413220 -233251133 - AluSx SINE Alu -21 291 1 519 302 61 14 chr1 9413222 9413434 -233250919 - MIR SINE MIR -6 256 35 1802 186 0 0 chr1 9413476 9413788 -233250565 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 9414717 9414739 -233249614 + AT_rich Low_complexity Low_complexity 1 22 0 348 24 0 0 chr1 9415061 9415102 -233249251 + (TCC)n Simple_repeat Simple_repeat 2 42 0 183 80 0 0 chr1 9416429 9416454 -233247899 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 414 249 13 24 chr1 9420456 9420616 -233243737 + MIR SINE MIR 48 203 -59 414 260 6 17 chr1 9420995 9421176 -233243177 + (CA)n Simple_repeat Simple_repeat 2 180 0 267 294 5 27 chr1 9421295 9421479 -233242874 + (CA)n Simple_repeat Simple_repeat 1 180 0 279 305 6 6 chr1 9421704 9421878 -233242475 + (CA)n Simple_repeat Simple_repeat 1 174 0 198 0 0 0 chr1 9422683 9422705 -233241648 + (T)n Simple_repeat Simple_repeat 1 22 0 375 298 60 36 chr1 9423922 9424090 -233240263 + L1ME4a LINE L1 5893 6064 -57 409 329 119 9 chr1 9424125 9424344 -233240009 + MIR SINE MIR 9 251 -11 475 303 86 0 chr1 9425152 9425327 -233239026 - MIR SINE MIR -26 236 47 357 24 0 0 chr1 9426650 9426692 -233237661 + (TG)n Simple_repeat Simple_repeat 2 43 0 2306 89 3 0 chr1 9426994 9427297 -233237056 + AluSx SINE Alu 1 304 -8 214 327 114 30 chr1 9427335 9427537 -233236816 - MIR SINE MIR -12 250 32 619 246 149 0 chr1 9427737 9427912 -233236441 + MER3 DNA MER1_type 9 209 0 2020 118 0 7 chr1 9427958 9428269 -233236084 - AluSx SINE Alu 0 309 1 278 148 0 19 chr1 9428421 9428475 -233235878 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 730 114 11 45 chr1 9428475 9428651 -233235702 + (TTCC)n Simple_repeat Simple_repeat 2 171 0 332 181 19 29 chr1 9428625 9428730 -233235623 + CT-rich Low_complexity Low_complexity 3 106 0 * 209 257 176 42 chr1 9429295 9429463 -233234890 - MIR SINE MIR -54 154 3 478 250 91 8 chr1 9429963 9430095 -233234258 - MIR SINE MIR -37 225 83 441 276 26 2 chr1 9430482 9430664 -233233689 - MIR SINE MIR -50 212 28 192 214 0 0 chr1 9431036 9431092 -233233261 + (CA)n Simple_repeat Simple_repeat 2 57 0 351 96 0 0 chr1 9432928 9432980 -233231373 + (TC)n Simple_repeat Simple_repeat 1 52 0 290 87 22 0 chr1 9435127 9435173 -233229180 + (GA)n Simple_repeat Simple_repeat 2 48 0 180 77 0 0 chr1 9435718 9435744 -233228609 + (C)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr1 9436260 9436282 -233228071 + AT_rich Low_complexity Low_complexity 1 22 0 426 108 0 0 chr1 9437538 9437603 -233226750 + (TG)n Simple_repeat Simple_repeat 1 65 0 213 229 49 16 chr1 9438285 9438407 -233225946 + (CCCG)n Simple_repeat Simple_repeat 2 127 0 240 100 0 0 chr1 9439793 9439833 -233224520 + (CTCG)n Simple_repeat Simple_repeat 2 41 0 205 225 36 90 chr1 9440632 9440743 -233223610 - L2 LINE L2 -105 3208 3104 924 121 8 0 chr1 9440764 9440896 -233223457 + FLAM_C SINE Alu 1 133 0 298 257 14 0 chr1 9441994 9442068 -233222285 - MIR3 SINE MIR -37 171 97 732 246 62 7 chr1 9442138 9442353 -233222000 + MIR SINE MIR 36 261 -1 616 279 149 32 chr1 9443127 9443599 -233220754 + L2 LINE L2 2760 3288 -25 247 337 71 0 chr1 9444028 9444126 -233220227 + L2 LINE L2 3167 3271 -1 548 241 68 19 chr1 9444244 9444406 -233219947 - MIR SINE MIR -3 259 90 2008 151 0 0 chr1 9444658 9444969 -233219384 + AluSx SINE Alu 1 311 -1 2246 94 0 0 chr1 9445258 9445556 -233218797 - AluSx SINE Alu -14 298 1 993 277 92 59 chr1 9445750 9446381 -233217972 - L1ME4a LINE L1 -1 6120 5469 199 184 0 0 chr1 9447018 9447056 -233217297 + MIR3 SINE MIR 160 197 -11 317 254 136 104 chr1 9448129 9448416 -233215937 + L2 LINE L2 2832 3127 -145 2436 80 0 0 chr1 9448484 9448795 -233215558 - AluSx SINE Alu -1 311 1 733 252 95 14 chr1 9448815 9449025 -233215328 + MIR SINE MIR 36 262 0 2258 78 3 0 chr1 9449489 9449783 -233214570 + AluSq SINE Alu 1 295 -18 281 229 41 107 chr1 9449886 9450008 -233214345 - MIR SINE MIR -75 133 20 611 232 7 0 chr1 9450274 9450562 -233213791 + (TCCA)n Simple_repeat Simple_repeat 1 290 0 810 174 0 0 chr1 9450600 9450772 -233213581 + (TCCA)n Simple_repeat Simple_repeat 2 173 0 282 240 10 83 chr1 9450772 9450868 -233213485 - L2 LINE L2 0 3272 3184 402 315 0 15 chr1 9450959 9451089 -233213264 + MIR3 SINE MIR 31 158 -50 713 283 50 5 chr1 9451981 9452200 -233212153 + MIR SINE MIR 33 261 -1 201 333 39 0 chr1 9452218 9452296 -233212057 + MIR3 SINE MIR 106 186 -22 587 253 165 5 chr1 9454036 9454242 -233210111 + MIR SINE MIR 27 262 0 236 410 14 14 chr1 9454502 9454641 -233209712 + L2 LINE L2 3134 3272 0 1460 89 0 11 chr1 9454921 9455112 -233209241 + AluSx SINE Alu 1 189 -123 502 253 195 0 chr1 9455209 9455383 -233208970 + MIR SINE MIR 48 255 -7 194 81 27 0 chr1 9455383 9455420 -233208933 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2168 97 0 7 chr1 9455420 9455709 -233208644 - AluSq SINE Alu -26 287 1 295 304 34 38 chr1 9455924 9456082 -233208271 - MIR3 SINE MIR -62 146 3 391 313 8 16 chr1 9456621 9456749 -233207604 - MIR SINE MIR -45 217 91 221 345 0 46 chr1 9456740 9456827 -233207526 + L2 LINE L2 3189 3271 -1 * 499 346 33 33 chr1 9456870 9457113 -233207240 - MIR SINE MIR -15 247 5 202 263 63 42 chr1 9457862 9457957 -233206396 - MIR3 SINE MIR -104 104 8 * 772 259 78 9 chr1 9457897 9458129 -233206224 + MIR SINE MIR 11 258 -4 428 255 19 0 chr1 9458210 9458316 -233206037 - MER81 DNA DNA -1 113 6 234 313 108 0 chr1 9458905 9458988 -233205365 - MIR SINE MIR -60 202 111 295 300 194 50 chr1 9459517 9459677 -233204676 - MIR SINE MIR -44 218 36 484 289 69 39 chr1 9459711 9459915 -233204438 + MIR SINE MIR 18 227 -35 180 347 124 4 chr1 9460591 9460816 -233203537 + L2 LINE L2 2723 2974 -340 195 135 19 115 chr1 9461015 9461067 -233203286 - L2 LINE L2 0 3313 3267 195 319 44 35 chr1 9461183 9461296 -233203057 + L2 LINE L2 3141 3254 -18 657 96 0 0 chr1 9461328 9461422 -233202931 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 2273 115 0 0 chr1 9461422 9461734 -233202619 - AluSx SINE Alu 0 312 1 679 279 90 21 chr1 9462481 9462714 -233201639 + MIR SINE MIR 2 250 -12 215 228 0 35 chr1 9463065 9463122 -233201231 + G-rich Low_complexity Low_complexity 2 56 0 195 314 57 29 chr1 9463408 9463513 -233200840 + MIR SINE MIR 85 192 -70 373 220 189 30 chr1 9463732 9463864 -233200489 - MIR3 SINE MIR -53 155 3 1945 152 7 3 chr1 9464257 9464566 -233199787 - AluSx SINE Alu -2 310 1 259 349 106 8 chr1 9464622 9464754 -233199599 - MIR SINE MIR -62 200 56 316 358 25 31 chr1 9464786 9464948 -233199405 + L2 LINE L2 2894 3054 -218 186 43 0 0 chr1 9464956 9464979 -233199374 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 576 214 9 0 chr1 9464980 9465092 -233199261 - L2 LINE L2 -14 3299 3187 2426 87 0 0 chr1 9465226 9465538 -233198815 - AluSx SINE Alu 0 312 1 1926 135 10 7 chr1 9465541 9465845 -233198508 - AluJb SINE Alu -7 305 1 579 269 16 42 chr1 9466093 9466286 -233198067 + MIR3 SINE MIR 15 202 -6 388 269 134 47 chr1 9466786 9466935 -233197418 - MIR SINE MIR 0 262 101 1919 140 24 3 chr1 9467000 9467292 -233197061 + AluSx SINE Alu 1 298 -14 318 354 0 0 chr1 9468030 9468126 -233196227 + L1M4 LINE L1 3074 3169 -2977 354 291 28 31 chr1 9468648 9468841 -233195512 + MIR SINE MIR 34 226 -36 611 269 76 6 chr1 9468848 9469019 -233195334 - MIR SINE MIR -1 261 79 2189 107 0 0 chr1 9469630 9469928 -233194425 + AluSx SINE Alu 1 298 -14 37 0 0 21 chr1 9469944 9469957 -233194396 + AT_rich Low_complexity Low_complexity 1 13 -34 2187 103 0 3 chr1 9469957 9470248 -233194105 - AluSg SINE Alu -20 290 1 37 0 0 21 chr1 9470248 9470282 -233194071 + AT_rich Low_complexity Low_complexity 13 47 0 516 278 14 28 chr1 9470451 9470595 -233193758 - MIR SINE MIR -113 149 8 255 236 0 0 chr1 9470712 9470767 -233193586 + (TGAA)n Simple_repeat Simple_repeat 1 55 0 356 292 102 7 chr1 9470769 9470906 -233193447 - MIR SINE MIR -75 187 38 225 0 0 0 chr1 9472356 9472381 -233191972 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1624 158 0 45 chr1 9472440 9472750 -233191603 + AluJb SINE Alu 1 296 -16 356 365 105 30 chr1 9472992 9473192 -233191161 + L1MC4a LINE L1 5721 5935 -1873 533 281 95 50 chr1 9474111 9474353 -233190000 + MIR SINE MIR 8 260 -2 296 242 0 0 chr1 9474862 9474928 -233189425 - MIR SINE MIR -138 124 59 2187 125 0 0 chr1 9475463 9475775 -233188578 - AluSx SINE Alu 0 312 1 212 200 13 53 chr1 9476564 9476639 -233187714 + L2 LINE L2 2967 3038 -234 2011 155 0 0 chr1 9476786 9477090 -233187263 + AluJb SINE Alu 1 304 -8 400 274 132 57 chr1 9477090 9477302 -233187051 - L2 LINE L2 -1 3312 3085 1032 151 0 0 chr1 9477397 9477576 -233186777 + (TTCA)n Simple_repeat Simple_repeat 1 179 0 1089 136 0 0 chr1 9477577 9477754 -233186599 + (CTCA)n Simple_repeat Simple_repeat 3 179 0 285 98 0 0 chr1 9477755 9477796 -233186557 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 486 289 111 0 chr1 9478888 9479068 -233185285 - MIR SINE MIR 0 262 63 215 167 0 0 chr1 9479729 9479765 -233184588 + MIR SINE MIR 110 145 -63 479 297 180 28 chr1 9479767 9479917 -233184436 - L2 LINE L2 -5 3308 3182 2150 92 0 7 chr1 9479917 9480224 -233184129 + AluSx SINE Alu 1 305 0 479 297 180 28 chr1 9480224 9480395 -233183958 - L2 LINE L2 -131 3182 2937 255 170 21 0 chr1 9480718 9480765 -233183588 - MIR3 SINE MIR -52 156 109 949 188 0 0 chr1 9481075 9481261 -233183092 + FRAM SINE Alu 1 176 0 550 244 6 70 chr1 9481329 9481501 -233182852 + MIR SINE MIR 26 186 -76 343 336 52 0 chr1 9481605 9481721 -233182632 - MIR SINE MIR -124 138 17 222 336 8 0 chr1 9482566 9482688 -233181665 + (TG)n Simple_repeat Simple_repeat 1 123 0 2334 90 0 10 chr1 9484018 9484329 -233180024 + AluY SINE Alu 1 308 -3 463 247 11 144 chr1 9485081 9485352 -233179001 - MIR SINE MIR -9 253 19 1377 271 129 0 chr1 9485514 9485540 -233178813 + L2 LINE L2 2357 2378 -936 2233 95 3 0 chr1 9485540 9485836 -233178517 - AluSx SINE Alu -15 297 1 1377 271 129 0 chr1 9485836 9486322 -233178031 + L2 LINE L2 2378 2935 -379 317 280 32 96 chr1 9486449 9486617 -233177736 + L2 LINE L2 2945 3094 -219 1668 190 0 14 chr1 9486617 9486945 -233177408 - AluJo SINE Alu 0 326 3 317 280 32 96 chr1 9486945 9487025 -233177328 + L2 LINE L2 3094 3178 -135 1842 216 70 19 chr1 9487059 9487684 -233176669 - L1MEc LINE L1 -4948 1448 792 1697 188 3 0 chr1 9487701 9487988 -233176365 - AluJb SINE Alu -24 288 1 727 152 7 0 chr1 9487988 9488126 -233176227 - L1MC3 LINE L1 -6 7779 7641 621 132 0 99 chr1 9488126 9488247 -233176106 + FRAM SINE Alu 65 173 -3 643 218 58 0 chr1 9488253 9488409 -233175944 - L1MD3 LINE L1 -146 7849 7685 1085 148 94 20 chr1 9488409 9488612 -233175741 - AluJo SINE Alu -16 296 79 3427 215 89 30 chr1 9488612 9489234 -233175119 - L1MC3 LINE L1 -308 7477 6893 2028 152 7 0 chr1 9489234 9489544 -233174809 - AluJb SINE Alu 0 312 1 1450 167 101 17 chr1 9489550 9489838 -233174515 - AluJb SINE Alu 0 312 1 3427 215 89 30 chr1 9489838 9490218 -233174135 - L1MC3 LINE L1 -896 6889 6408 924 251 8 4 chr1 9490222 9490461 -233173892 - L1MEc LINE L1 -5608 788 549 771 245 60 78 chr1 9490469 9490678 -233173675 - L1MEc LINE L1 -5984 412 201 1922 95 71 10 chr1 9490678 9490972 -233173381 - AluJb SINE Alu 0 312 1 771 245 60 78 chr1 9490972 9491072 -233173281 - L1MEc LINE L1 -6195 201 109 752 208 0 0 chr1 9491072 9491197 -233173156 - FLAM_A SINE Alu -8 125 1 771 245 60 78 chr1 9491197 9491270 -233173083 - L1MEc LINE L1 -6287 109 36 308 292 34 11 chr1 9491270 9491359 -233172994 - L2 LINE L2 -43 3270 3180 1995 125 10 7 chr1 9491415 9491710 -233172643 + AluSx SINE Alu 1 296 -16 260 125 21 0 chr1 9491710 9491758 -233172595 - Cheshire DNA MER1_type -29 2391 2343 * 1648 198 55 0 chr1 9491755 9492083 -233172270 - Cheshire DNA MER1_type -2074 346 1 2046 150 0 3 chr1 9492130 9492443 -233171910 + AluSx SINE Alu 1 312 0 256 381 121 0 chr1 9492443 9492616 -233171737 - L2 LINE L2 -136 3177 2984 205 281 207 0 chr1 9492652 9492734 -233171619 + L2 LINE L2 3133 3231 -41 327 283 29 9 chr1 9492866 9493003 -233171350 + MIR SINE MIR 11 146 -62 339 297 94 90 chr1 9493630 9493886 -233170467 + L2 LINE L2 3015 3271 -1 248 288 34 103 chr1 9493896 9494042 -233170311 - MIR3 SINE MIR -38 170 35 187 217 0 0 chr1 9494050 9494097 -233170256 + MIR SINE MIR 102 148 -60 1985 118 7 0 chr1 9494312 9494591 -233169762 - AluSx SINE Alu -16 296 16 249 340 64 39 chr1 9495591 9495794 -233168559 - L2 LINE L2 -113 3159 2952 274 278 0 10 chr1 9496342 9496439 -233167914 + (CACCAT)n Simple_repeat Simple_repeat 6 101 0 309 200 0 59 chr1 9496459 9496594 -233167759 + (CACCAT)n Simple_repeat Simple_repeat 1 127 0 362 240 0 7 chr1 9496622 9496768 -233167585 + (CCA)n Simple_repeat Simple_repeat 1 145 0 594 236 0 21 chr1 9496816 9497103 -233167250 + (CACCAT)n Simple_repeat Simple_repeat 1 281 0 608 240 7 10 chr1 9497154 9497452 -233166901 + (CACCAT)n Simple_repeat Simple_repeat 1 297 0 2382 101 93 21 chr1 9497496 9497761 -233166592 + MER83 LTR ERV1 1 308 -140 2039 122 54 35 chr1 9497761 9497832 -233166521 - THE1C LTR MaLR 0 375 307 2296 107 0 0 chr1 9497832 9498141 -233166212 + AluY SINE Alu 2 310 -1 2039 122 54 35 chr1 9498141 9498437 -233165916 - THE1C LTR MaLR -68 307 1 2382 101 93 21 chr1 9498437 9498589 -233165764 + MER83 LTR ERV1 308 448 0 306 246 0 26 chr1 9498592 9498706 -233165647 + (CAT)n Simple_repeat Simple_repeat 2 112 0 617 296 182 0 chr1 9498864 9499232 -233165121 + L2 LINE L2 2838 3272 0 201 141 16 31 chr1 9500938 9501002 -233163351 + CT-rich Low_complexity Low_complexity 1 63 0 335 261 0 18 chr1 9501027 9501138 -233163215 + CT-rich Low_complexity Low_complexity 1 109 0 283 285 227 8 chr1 9502041 9502283 -233162070 - L2 LINE L2 0 3313 3019 502 259 16 86 chr1 9502405 9502528 -233161825 - MIR SINE MIR -6 256 126 2257 117 0 0 chr1 9502528 9502835 -233161518 + AluSx SINE Alu 3 309 -3 1615 181 10 10 chr1 9502840 9503138 -233161215 + AluJb SINE Alu 1 298 -14 502 259 16 86 chr1 9503138 9503283 -233161070 - MIR SINE MIR -140 122 5 301 374 94 24 chr1 9504073 9504667 -233159686 - L2 LINE L2 -337 2977 2342 309 254 79 35 chr1 9504943 9505057 -233159296 + MIR3 SINE MIR 78 196 -12 469 272 7 22 chr1 9506029 9506165 -233158188 + MIR SINE MIR 84 217 -45 207 100 0 0 chr1 9506703 9506733 -233157620 + (TG)n Simple_repeat Simple_repeat 1 30 0 308 153 0 14 chr1 9507656 9507728 -233156625 + (TG)n Simple_repeat Simple_repeat 2 72 0 256 272 0 43 chr1 9507990 9508082 -233156271 + GA-rich Low_complexity Low_complexity 2 89 0 291 140 0 0 chr1 9508687 9508737 -233155616 + (TC)n Simple_repeat Simple_repeat 2 51 0 450 0 0 0 chr1 9509184 9509234 -233155119 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 226 83 0 62 chr1 9509311 9509359 -233154994 + (GGAGA)n Simple_repeat Simple_repeat 1 45 0 240 137 6 93 chr1 9509414 9509575 -233154778 + (GGAGA)n Simple_repeat Simple_repeat 1 147 0 201 238 16 0 chr1 9509710 9509773 -233154580 + C-rich Low_complexity Low_complexity 4 67 0 184 390 48 19 chr1 9510159 9510369 -233153984 + L2 LINE L2 3012 3227 -45 29 78 0 0 chr1 9510615 9510679 -233153674 + GC_rich Low_complexity Low_complexity 1 64 0 35 24 0 0 chr1 9510709 9510751 -233153602 + GC_rich Low_complexity Low_complexity 1 42 0 313 289 11 5 chr1 9511775 9511896 -233152457 - MIR SINE MIR -62 146 34 234 261 31 0 chr1 9512017 9512082 -233152271 - Charlie8 DNA MER1_type -3 2414 2348 321 288 76 8 chr1 9512207 9512325 -233152028 + MIR SINE MIR 46 171 -91 326 258 136 50 chr1 9512436 9512657 -233151696 - LTR16C LTR ERVL -59 432 193 252 250 53 40 chr1 9512989 9513065 -233151288 - L2 LINE L2 -188 3084 3008 262 333 40 32 chr1 9513387 9513513 -233150840 - MER5A DNA MER1_type -35 154 28 390 204 0 0 chr1 9514009 9514117 -233150236 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 388 300 36 29 chr1 9514117 9514257 -233150096 - L2 LINE L2 0 3313 3173 2181 91 0 3 chr1 9514643 9514953 -233149400 - AluY SINE Alu 0 309 1 2160 121 0 9 chr1 9514965 9515280 -233149073 - AluSx SINE Alu 0 312 1 313 320 146 15 chr1 9515418 9515624 -233148729 - L2 LINE L2 -205 3067 2835 729 258 57 39 chr1 9516053 9516287 -233148066 - MIR SINE MIR -17 245 11 626 273 12 0 chr1 9516975 9517140 -233147213 - MIR3 SINE MIR 0 208 42 2112 131 0 0 chr1 9517165 9517470 -233146883 + AluSx SINE Alu 1 305 -7 282 299 58 0 chr1 9517641 9517728 -233146625 + MIR SINE MIR 95 186 -76 180 213 0 43 chr1 9518002 9518049 -233146304 - MIR SINE MIR -69 139 95 192 288 62 12 chr1 9518143 9518223 -233146130 + MIR SINE MIR 19 102 -160 1204 128 35 35 chr1 9519011 9519205 -233145148 - AluJb SINE Alu 0 316 120 2245 103 3 0 chr1 9519205 9519505 -233144848 + AluSp SINE Alu 1 301 -12 1204 128 35 35 chr1 9519505 9519541 -233144812 - AluJb SINE Alu -195 121 86 2534 184 37 29 chr1 9519560 9520050 -233144303 - L1MB5 LINE L1 0 6174 5681 2166 107 0 3 chr1 9520265 9520563 -233143790 - AluSx SINE Alu -15 297 1 191 274 44 80 chr1 9520717 9520830 -233143523 - MIR3 SINE MIR -2 206 98 268 259 49 12 chr1 9520919 9521000 -233143353 - MIR SINE MIR -75 187 104 457 328 79 11 chr1 9521253 9521442 -233142911 + MIR SINE MIR 50 251 -11 281 252 71 79 chr1 9522337 9522464 -233141889 - MIR SINE MIR -65 143 18 1591 167 10 33 chr1 9522481 9522781 -233141572 + AluJb SINE Alu 1 293 -19 2053 104 0 31 chr1 9522783 9523099 -233141254 + AluSg SINE Alu 1 307 0 264 228 76 13 chr1 9523165 9523244 -233141109 + MIR SINE MIR 2 85 -177 217 354 13 13 chr1 9523506 9523585 -233140768 + L2 LINE L2 3142 3220 -52 1273 227 181 83 chr1 9523633 9523892 -233140461 + L2 LINE L2 1901 2133 -1181 2074 138 0 0 chr1 9523892 9524188 -233140165 - AluJb SINE Alu -16 296 1 1273 227 181 83 chr1 9524188 9524221 -233140132 + L2 LINE L2 2133 2161 -1153 1170 226 78 10 chr1 9524221 9524517 -233139836 - MER33 DNA MER1_type -4 320 5 1273 227 181 83 chr1 9524517 9524740 -233139613 + L2 LINE L2 2161 2361 -953 1999 128 0 0 chr1 9524740 9525042 -233139311 + AluSq SINE Alu 1 302 0 1273 227 181 83 chr1 9525042 9525255 -233139098 + L2 LINE L2 2361 2552 -762 1459 162 23 53 chr1 9525255 9525557 -233138796 + AluSx SINE Alu 6 298 -14 1273 227 181 83 chr1 9525557 9525638 -233138715 + L2 LINE L2 2552 2793 -521 342 253 54 133 chr1 9525665 9525905 -233138448 + L2 LINE L2 2912 3189 -124 2226 110 0 0 chr1 9525905 9526213 -233138140 - AluSc SINE Alu 0 309 2 342 253 54 133 chr1 9526213 9526328 -233138025 + L2 LINE L2 3189 3312 -1 705 307 173 18 chr1 9526332 9526573 -233137780 - L1M4 LINE L1 -1195 4951 4749 1750 128 55 10 chr1 9526573 9526863 -233137490 - AluSq SINE Alu -10 303 1 1832 145 20 20 chr1 9526865 9527038 -233137315 - AluJo SINE Alu -8 304 129 198 0 0 0 chr1 9527038 9527060 -233137293 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1832 145 20 20 chr1 9527060 9527190 -233137163 - AluJo SINE Alu -182 130 1 705 307 173 18 chr1 9527190 9527339 -233137014 - L1M4 LINE L1 -1397 4749 4497 788 223 83 0 chr1 9527399 9527556 -233136797 - FAM SINE Alu -5 170 1 21 71 0 0 chr1 9527566 9527608 -233136745 + AT_rich Low_complexity Low_complexity 1 42 0 734 313 40 48 chr1 9527789 9528050 -233136303 + L1ME4a LINE L1 5320 5582 -539 2205 119 3 0 chr1 9528050 9528361 -233135992 - AluSx SINE Alu 0 312 1 1956 158 7 0 chr1 9528364 9528667 -233135686 - AluJb SINE Alu -7 305 1 734 313 40 48 chr1 9528667 9529020 -233135333 + L1ME4a LINE L1 5584 5933 -188 2411 77 0 10 chr1 9529027 9529340 -233135013 + AluY SINE Alu 2 311 0 3681 183 21 37 chr1 9529341 9529714 -233134639 + L1MB8 LINE L1 5296 5673 -505 2176 120 3 0 chr1 9529714 9530015 -233134338 + AluSx SINE Alu 1 302 -10 3681 183 21 37 chr1 9530015 9530465 -233133888 + L1MB8 LINE L1 5673 6106 -72 1922 164 0 0 chr1 9530465 9530758 -233133595 - AluJo SINE Alu -19 293 1 3681 183 21 37 chr1 9530758 9530830 -233133523 + L1MB8 LINE L1 6106 6178 0 1153 137 41 65 chr1 9530945 9531133 -233133220 + MER96B DNA MER1_type? 131 313 -104 1570 111 93 52 chr1 9531133 9531275 -233133078 + AluJb SINE Alu 1 136 -174 2222 101 3 3 chr1 9531275 9531581 -233132772 + AluSx SINE Alu 1 306 -6 1570 111 93 52 chr1 9531581 9531737 -233132616 + AluJb SINE Alu 136 310 0 1153 137 41 65 chr1 9531737 9531838 -233132515 + MER96B DNA MER1_type? 313 415 -2 30 117 0 0 chr1 9532083 9532246 -233132107 + GC_rich Low_complexity Low_complexity 1 163 0 26 50 0 0 chr1 9532423 9532463 -233131890 + GC_rich Low_complexity Low_complexity 1 40 0 195 370 63 16 chr1 9532527 9532716 -233131637 + L2 LINE L2 2869 3066 -247 382 237 53 9 chr1 9532870 9532984 -233131369 + MIR SINE MIR 19 137 -125 522 266 345 8 chr1 9533238 9533829 -233130524 + L2 LINE L2 1527 2316 -998 226 235 12 129 chr1 9534484 9534569 -233129784 - MER91A DNA MER1_type -65 75 1 923 272 60 23 chr1 9534581 9534934 -233129419 - MLT1I LTR MaLR 0 409 44 1571 231 119 39 chr1 9534955 9535092 -233129261 + L2 LINE L2 2315 2440 -873 2074 96 13 42 chr1 9535092 9535405 -233128948 + AluSq SINE Alu 1 304 -9 1571 231 119 39 chr1 9535405 9536021 -233128332 + L2 LINE L2 2440 3124 -189 325 367 92 15 chr1 9536028 9536363 -233127990 - L1M4c LINE L1 -5077 1307 947 270 0 0 0 chr1 9536363 9536393 -233127960 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 2085 147 0 3 chr1 9536411 9536723 -233127630 - AluSx SINE Alu -1 311 1 248 269 82 45 chr1 9536744 9536878 -233127475 + L2 LINE L2 3113 3251 -62 959 233 75 0 chr1 9536901 9537039 -233127314 + MIR SINE MIR 5 131 -131 2172 114 0 0 chr1 9537039 9537336 -233127017 + AluSx SINE Alu 1 297 -15 959 233 75 0 chr1 9537336 9537437 -233126916 + MIR SINE MIR 131 262 0 452 254 17 76 chr1 9537446 9537549 -233126804 + L1ME4a LINE L1 5616 5724 -397 2238 97 3 16 chr1 9537549 9537886 -233126467 - AluSp SINE Alu 0 313 1 452 254 17 76 chr1 9537886 9538018 -233126335 + L1ME4a LINE L1 5724 5837 -284 1950 142 0 19 chr1 9538018 9538328 -233126025 - AluJb SINE Alu 0 312 9 382 341 26 70 chr1 9538418 9538688 -233125665 + L1ME4a LINE L1 5861 6118 -3 2337 99 3 0 chr1 9538825 9539137 -233125216 + AluSq SINE Alu 1 313 0 2159 129 0 0 chr1 9539408 9539753 -233124600 - AluSx SINE Alu 0 345 1 587 191 0 0 chr1 9539896 9540006 -233124347 - MER21B LTR ERV1 -423 440 331 261 75 0 0 chr1 9541436 9541476 -233122877 + (TG)n Simple_repeat Simple_repeat 2 41 0 1991 130 10 3 chr1 9542709 9543008 -233121345 + AluSx SINE Alu 1 301 -11 330 87 0 0 chr1 9543008 9543054 -233121299 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 237 203 0 12 chr1 9543075 9543136 -233121217 - MIR SINE MIR -62 146 107 186 43 0 0 chr1 9543191 9543214 -233121139 + (GGA)n Simple_repeat Simple_repeat 1 23 0 375 296 79 37 chr1 9543293 9543482 -233120871 + MIR SINE MIR 20 216 -46 229 319 0 29 chr1 9545565 9545634 -233118719 - MIR SINE MIR -79 183 117 196 245 41 0 chr1 9546394 9546443 -233117910 - MIR SINE MIR -95 167 117 2205 132 0 0 chr1 9546518 9546829 -233117524 - AluSx SINE Alu -1 311 1 318 265 48 0 chr1 9546837 9546920 -233117433 + L2 LINE L2 3227 3313 0 589 303 39 6 chr1 9547894 9548072 -233116281 + MIR SINE MIR 21 204 -58 22 0 0 0 chr1 9548778 9548800 -233115553 + GC_rich Low_complexity Low_complexity 1 22 0 291 402 21 5 chr1 9551555 9551701 -233112652 - MIR SINE MIR -62 146 16 511 314 76 83 chr1 9551756 9552398 -233111955 + L2 LINE L2 2623 3264 -49 2114 101 34 0 chr1 9552432 9552729 -233111624 + AluSx SINE Alu 1 307 -5 575 253 20 13 chr1 9553177 9553327 -233111026 + MIR SINE MIR 35 185 -77 412 285 134 17 chr1 9554257 9554429 -233109924 + MIR SINE MIR 1 192 -70 330 204 0 0 chr1 9554542 9554635 -233109718 + (CA)n Simple_repeat Simple_repeat 1 93 0 341 315 9 9 chr1 9555330 9555438 -233108915 + MIR SINE MIR 47 154 -108 2290 109 3 0 chr1 9555490 9555792 -233108561 + AluSx SINE Alu 1 303 -9 314 357 14 14 chr1 9555927 9556067 -233108286 - MIR SINE MIR -77 185 46 245 286 71 14 chr1 9556306 9556376 -233107977 - MIR3 SINE MIR -23 185 112 355 281 91 78 chr1 9556602 9556933 -233107420 - L2 LINE L2 -96 3176 2842 1877 228 71 43 chr1 9556945 9557524 -233106829 - MLT1G1 LTR MaLR 0 595 1 385 275 109 0 chr1 9558295 9558433 -233105920 + L2 LINE L2 3119 3271 -1 2389 74 0 0 chr1 9558461 9558782 -233105571 + AluY SINE Alu 1 321 0 289 238 79 0 chr1 9558784 9558847 -233105506 + L2 LINE L2 3200 3267 -5 279 259 49 25 chr1 9558868 9558949 -233105404 + L2 LINE L2 3188 3270 -2 324 128 0 0 chr1 9560199 9560246 -233104107 + L2 LINE L2 3264 3310 -3 421 292 39 0 chr1 9560405 9560535 -233103818 + MIR SINE MIR 99 233 -29 1921 181 7 0 chr1 9560763 9561073 -233103280 + AluJb SINE Alu 1 312 0 300 348 84 0 chr1 9561077 9561232 -233103121 + HAL1 LINE L1 1140 1307 -1200 217 301 12 12 chr1 9561321 9561404 -233102949 - MIR SINE MIR -97 165 83 617 259 5 49 chr1 9561499 9561704 -233102649 - MIR SINE MIR -17 245 50 284 212 254 8 chr1 9561788 9561906 -233102447 - MER5B DNA MER1_type -4 174 28 503 200 150 50 chr1 9561963 9562123 -233102230 - MER5A DNA MER1_type -7 182 7 393 255 11 0 chr1 9562137 9562231 -233102122 - MER5B DNA MER1_type 0 178 84 515 207 39 67 chr1 9562246 9562361 -233101992 + MER5B DNA MER1_type 3 113 -65 2553 60 0 3 chr1 9562361 9562662 -233101691 - AluY SINE Alu -11 300 1 515 207 39 67 chr1 9562662 9562725 -233101628 + MER5B DNA MER1_type 113 176 -2 1818 115 31 15 chr1 9562841 9563102 -233101251 - AluSq SINE Alu -7 306 42 2460 97 3 0 chr1 9563120 9563430 -233100923 - AluSq SINE Alu -2 311 1 681 292 69 15 chr1 9564047 9564411 -233099942 - L1MC4a LINE L1 -107 6014 5629 330 187 93 0 chr1 9564718 9564793 -233099560 - LTR67 LTR ERVL -5 552 471 2536 65 0 0 chr1 9564793 9565085 -233099268 + AluY SINE Alu 1 292 -19 1486 160 14 98 chr1 9565167 9565537 -233098816 + L1ME LINE L1 5039 5439 -727 2480 96 0 3 chr1 9565537 9565851 -233098502 + AluSp SINE Alu 1 313 0 1486 160 14 98 chr1 9565851 9565948 -233098405 + L1ME LINE L1 5439 5457 -709 2242 105 3 17 chr1 9565948 9566243 -233098110 + AluSx SINE Alu 1 291 -21 1486 160 14 98 chr1 9566243 9566386 -233097967 + L1ME LINE L1 5457 5610 -556 * 3244 157 30 30 chr1 9566380 9566870 -233097483 - L1MB5 LINE L1 -247 5927 5435 1833 162 17 10 chr1 9566870 9567167 -233097186 - AluJb SINE Alu -13 299 1 3244 157 30 30 chr1 9567167 9567346 -233097007 - L1MB5 LINE L1 -738 5436 5258 1873 143 14 27 chr1 9567357 9567650 -233096703 - AluJo SINE Alu -12 300 12 1961 201 85 20 chr1 9567659 9567771 -233096582 - L1MB5 LINE L1 -1322 4824 4721 2320 129 8 18 chr1 9567771 9568165 -233096188 + MLT1B LTR MaLR 1 390 0 1961 201 85 20 chr1 9568165 9568559 -233095794 - L1MB5 LINE L1 -1425 4721 4285 775 170 133 32 chr1 9568559 9568603 -233095750 + MER63 DNA MER1_type 102 140 -921 2118 139 7 0 chr1 9568603 9568898 -233095455 + AluSx SINE Alu 1 297 -15 775 170 133 32 chr1 9568898 9569041 -233095312 + MER63 DNA MER1_type 140 308 -753 1988 135 25 0 chr1 9569057 9569339 -233095014 + AluJb SINE Alu 1 289 -23 2056 92 0 0 chr1 9569359 9569608 -233094745 + AluSg SINE Alu 1 249 -61 216 0 0 0 chr1 9569608 9569632 -233094721 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 650 261 153 5 chr1 9569709 9569931 -233094422 + MER110A LTR ERV1 56 310 -158 372 121 0 0 chr1 9569939 9569997 -233094356 - AluSq SINE Alu -1 299 242 1527 73 0 11 chr1 9570000 9570191 -233094162 - AluSq SINE Alu -124 189 1 687 228 37 7 chr1 9570191 9570401 -233093952 + MER110A LTR ERV1 272 491 0 * 2282 181 12 2 chr1 9570401 9570814 -233093539 + MER63 DNA MER1_type 433 849 -212 649 195 0 9 chr1 9570816 9570929 -233093424 + FLAM_C SINE Alu 6 117 -26 360 0 0 0 chr1 9570932 9570972 -233093381 + (TAA)n Simple_repeat Simple_repeat 2 41 0 911 176 25 42 chr1 9570976 9571051 -233093302 + MER63 DNA MER1_type 827 902 -158 1986 166 7 0 chr1 9571051 9571359 -233092994 - AluJb SINE Alu -2 310 1 911 176 25 42 chr1 9571359 9571402 -233092951 + MER63 DNA MER1_type 902 944 -116 2560 43 0 20 chr1 9571402 9571701 -233092652 - AluY SINE Alu -18 293 1 911 176 25 42 chr1 9571701 9571819 -233092534 + MER63 DNA MER1_type 944 1060 0 465 264 88 7 chr1 9571819 9571967 -233092386 + L1ME1 LINE L1 5999 6158 -8 236 324 20 29 chr1 9572076 9572178 -233092175 - LTR67 LTR ERVL -193 364 264 274 224 0 47 chr1 9572207 9572292 -233092061 - MLT1J LTR MaLR -321 190 110 * 655 281 0 18 chr1 9572234 9572405 -233091948 - LTR67 LTR ERVL -386 171 4 185 296 56 0 chr1 9572692 9572746 -233091607 - L2 LINE L2 -214 3058 3002 2143 133 0 0 chr1 9572755 9573048 -233091305 + AluSx SINE Alu 1 293 -19 2389 84 3 16 chr1 9573059 9573368 -233090985 + AluSq SINE Alu 1 305 -8 2352 79 3 0 chr1 9573368 9573659 -233090694 + AluY SINE Alu 1 292 -19 1695 175 3 43 chr1 9573848 9573973 -233090380 + AluJo SINE Alu 1 129 -183 2250 101 0 17 chr1 9573973 9574270 -233090083 - AluSg SINE Alu -18 292 1 1695 175 3 43 chr1 9574270 9574447 -233089906 + AluJo SINE Alu 129 291 -21 1579 156 13 80 chr1 9574467 9574608 -233089745 + L1MB3 LINE L1 5820 5969 -214 2315 133 37 42 chr1 9574608 9574799 -233089554 + MSTB LTR MaLR 1 191 -235 2136 120 7 0 chr1 9574799 9575098 -233089255 + AluSx SINE Alu 1 301 -11 2162 134 0 0 chr1 9575106 9575411 -233088942 + AluSx SINE Alu 1 305 -7 2315 133 37 42 chr1 9575411 9575638 -233088715 + MSTB LTR MaLR 198 426 0 1579 156 13 80 chr1 9575638 9575836 -233088517 + L1MB3 LINE L1 5969 6132 -51 761 156 31 0 chr1 9575836 9575964 -233088389 + FLAM_C SINE Alu 2 133 0 1579 156 13 80 chr1 9575964 9576013 -233088340 + L1MB3 LINE L1 6132 6183 0 195 47 23 47 chr1 9576027 9576055 -233088298 + (TA)n Simple_repeat Simple_repeat 2 29 -14 2419 65 3 0 chr1 9576055 9576347 -233088006 - AluY SINE Alu -18 293 1 2336 100 0 13 chr1 9576349 9576648 -233087705 - AluSx SINE Alu -17 295 1 195 47 23 47 chr1 9576648 9576659 -233087694 + (TA)n Simple_repeat Simple_repeat 30 43 0 315 71 0 0 chr1 9576665 9576707 -233087646 + (CA)n Simple_repeat Simple_repeat 2 43 0 1315 65 130 0 chr1 9576726 9576926 -233087427 - MER30 DNA MER1_type 0 230 5 340 246 0 116 chr1 9577097 9577235 -233087118 + L1MCa LINE L1 1995 2116 -4310 205 266 115 35 chr1 9577384 9577409 -233086944 - L2 LINE L2 -154 3118 3096 1876 134 0 0 chr1 9577409 9577663 -233086690 + AluSx SINE Alu 1 254 -58 205 266 115 35 chr1 9577663 9577750 -233086603 - L2 LINE L2 -176 3096 2997 736 220 13 98 chr1 9579179 9579415 -233084938 - MIR SINE MIR 0 262 47 191 261 43 0 chr1 9579521 9579590 -233084763 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 9579596 9579649 -233084704 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 207 182 0 23 chr1 9579685 9579729 -233084624 + MIR SINE MIR 106 148 -114 2288 110 3 0 chr1 9579731 9580031 -233084322 + AluSx SINE Alu 2 302 -10 2320 88 7 3 chr1 9580079 9580374 -233083979 + AluSx SINE Alu 4 299 -13 1143 166 37 9 chr1 9580375 9580592 -233083761 + MLT1B LTR MaLR 166 388 -2 197 277 0 0 chr1 9580595 9580642 -233083711 + MIR3 SINE MIR 134 180 -28 244 234 0 0 chr1 9580761 9580808 -233083545 + AluSx SINE Alu 246 292 -9 2179 97 4 4 chr1 9580832 9581111 -233083242 + AluSx SINE Alu 21 299 -13 845 235 36 18 chr1 9581112 9581333 -233083020 - MLT1C LTR MaLR -58 409 185 416 143 0 0 chr1 9581335 9581405 -233082948 - AluSc SINE Alu -4 305 236 297 83 7 13 chr1 9581406 9581470 -233082883 - AluSp SINE Alu -133 170 112 * 640 180 29 7 chr1 9581445 9581584 -233082769 - MLT1C LTR MaLR -280 187 46 1266 166 0 0 chr1 9581585 9581772 -233082581 - AluJb SINE Alu -14 298 112 2125 134 0 0 chr1 9581794 9582086 -233082267 + AluSx SINE Alu 8 299 -13 450 167 0 0 chr1 9582667 9582739 -233081614 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2820 228 46 4 chr1 9582761 9583521 -233080832 + L1M4 LINE L1 3802 4593 -1553 2589 64 0 6 chr1 9583521 9583834 -233080519 - AluSq SINE Alu -2 311 1 265 304 34 38 chr1 9584049 9584207 -233080146 - MIR SINE MIR -62 146 3 367 305 8 16 chr1 9584746 9584874 -233079479 - MIR SINE MIR -45 217 91 209 345 0 46 chr1 9584865 9584952 -233079401 + L2 LINE L2 3189 3271 -1 * 421 346 33 33 chr1 9584995 9585238 -233079115 - MIR SINE MIR -15 247 5 699 261 87 9 chr1 9586022 9586252 -233078101 + MIR SINE MIR 11 258 -4 452 264 19 0 chr1 9586333 9586439 -233077914 - MER81 DNA DNA -1 113 6 209 313 108 0 chr1 9587028 9587111 -233077242 - MIR SINE MIR -60 202 111 1427 189 32 6 chr1 9587874 9588187 -233076166 + L1MB5 LINE L1 5848 6168 -6 2607 167 61 6 chr1 9588191 9588730 -233075623 + L1MB8 LINE L1 5550 6118 -60 200 348 43 17 chr1 9589169 9589284 -233075069 - L2 LINE L2 -509 2805 2688 1896 125 21 3 chr1 9589284 9589619 -233074734 + L1MA5 LINE L1 5960 6300 0 200 83 0 28 chr1 9589716 9589752 -233074601 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 190 368 85 0 chr1 9589818 9589924 -233074429 - L2 LINE L2 -665 2649 2535 216 0 0 0 chr1 9590452 9590476 -233073877 + (CA)n Simple_repeat Simple_repeat 1 24 0 943 247 18 5 chr1 9590503 9590722 -233073631 + MIR SINE MIR 2 223 -39 2207 113 0 0 chr1 9592446 9592764 -233071589 - AluSx SINE Alu 0 318 1 209 148 0 19 chr1 9592906 9592960 -233071393 + (CTTG)n Simple_repeat Simple_repeat 2 54 0 886 123 11 22 chr1 9592980 9593159 -233071194 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 348 204 9 19 chr1 9593167 9593275 -233071078 + CT-rich Low_complexity Low_complexity 3 109 0 215 266 126 0 chr1 9593840 9593931 -233070422 - MIR3 SINE MIR -54 154 90 469 227 91 8 chr1 9594508 9594640 -233069713 - MIR SINE MIR -37 225 83 437 262 28 0 chr1 9595055 9595209 -233069144 - MIR SINE MIR -65 143 28 192 214 0 0 chr1 9595581 9595637 -233068716 + (CA)n Simple_repeat Simple_repeat 2 57 0 365 240 0 0 chr1 9597666 9597741 -233066612 - MIR SINE MIR -121 141 67 771 256 76 5 chr1 9597893 9598104 -233066249 + MIR SINE MIR 26 251 -11 407 355 161 10 chr1 9598970 9599485 -233064868 - L2 LINE L2 -646 2668 2076 611 209 7 22 chr1 9599487 9599626 -233064727 - FRAM SINE Alu -12 164 28 13746 96 31 4 chr1 9599726 9601879 -233062474 - L1P LINE L1 -1588 4558 2348 229 113 0 38 chr1 10002174 10002227 -232662126 + (GGGGA)n Simple_repeat Simple_repeat 5 55 0 342 360 0 0 chr1 10002234 10002398 -232661955 + G-rich Low_complexity Low_complexity 1 164 0 1705 151 10 21 chr1 10003053 10003344 -232661009 - AluJo SINE Alu -22 290 3 24 85 0 0 chr1 10003910 10003969 -232660384 + GC_rich Low_complexity Low_complexity 1 59 0 1298 92 11 5 chr1 10007698 10007883 -232656470 - AluSp SINE Alu -127 186 1 2029 135 6 3 chr1 10007965 10008269 -232656084 + AluSx SINE Alu 1 308 -4 243 0 0 0 chr1 10008269 10008296 -232656057 + (CAATG)n Simple_repeat Simple_repeat 2 28 0 2296 73 7 3 chr1 10009005 10009307 -232655046 - AluY SINE Alu -8 303 1 607 111 0 0 chr1 10009339 10009438 -232654915 + HERVI LTR ERV1 1611 1709 -5187 2213 92 3 3 chr1 10009438 10009743 -232654610 + AluSx SINE Alu 1 305 -7 2307 86 20 0 chr1 10009743 10010046 -232654307 + AluY SINE Alu 1 309 -2 1922 125 4 0 chr1 10010080 10010397 -232653956 + AluSx SINE Alu 9 326 0 270 235 99 0 chr1 10010467 10010548 -232653805 + HERVI LTR ERV1 4187 4275 -3510 1358 140 14 19 chr1 10010560 10010696 -232653657 + AluSq SINE Alu 1 137 -176 2541 43 0 3 chr1 10010696 10010999 -232653354 + AluY SINE Alu 1 302 -9 1358 140 14 19 chr1 10010999 10011076 -232653277 + AluSq SINE Alu 137 213 -100 205 284 40 47 chr1 10011890 10012038 -232652315 + (CACG)n Simple_repeat Simple_repeat 4 150 0 222 235 10 110 chr1 10012207 10012462 -232651891 + (CACG)n Simple_repeat Simple_repeat 1 229 0 206 296 0 0 chr1 10012931 10012985 -232651368 + MIR SINE MIR 111 164 -98 209 60 40 40 chr1 10017287 10017337 -232647016 + (CCCCCG)n Simple_repeat Simple_repeat 4 53 0 1330 192 19 11 chr1 10017976 10018237 -232646116 - AluSx SINE Alu -49 263 1 3541 155 29 0 chr1 10018885 10019471 -232644882 - LTR26 LTR ERV1 0 603 1 305 292 133 0 chr1 10020902 10021015 -232643338 - L1MC4 LINE L1 -1332 6710 6583 6708 70 9 0 chr1 10021564 10022846 -232641507 - L1PA7 LINE L1 0 6154 4855 6812 93 2 3 chr1 10022847 10023922 -232640431 + L1PA7 LINE L1 3773 4846 -1300 12071 148 17 9 chr1 10024471 10027300 -232637053 - L1PA13 LINE L1 -2 6161 3320 220 307 132 9 chr1 10029037 10029151 -232635202 + L2 LINE L2 3180 3307 -6 798 313 50 22 chr1 10029777 10030413 -232633940 + L1M4 LINE L1 4544 5197 -949 1891 172 35 58 chr1 10030916 10031312 -232633041 + MLT1B LTR MaLR 4 390 0 304 291 86 26 chr1 10032161 10032278 -232632075 - L2 LINE L2 -1 3312 3189 220 161 43 86 chr1 10032547 10032640 -232631713 + (CTGGGG)n Simple_repeat Simple_repeat 1 89 0 1068 206 127 24 chr1 10033199 10033493 -232630860 - MER54A LTR ERVL -6 895 554 1857 128 10 14 chr1 10033493 10033783 -232630570 + AluSq SINE Alu 3 291 -22 1068 206 127 24 chr1 10033783 10033857 -232630496 - MER54A LTR ERVL -347 554 489 255 286 0 0 chr1 10036827 10037005 -232627348 + (CA)n Simple_repeat Simple_repeat 1 178 0 491 283 6 6 chr1 10037018 10037195 -232627158 + (CA)n Simple_repeat Simple_repeat 2 178 0 263 294 78 10 chr1 10037254 10037356 -232626997 - L2 LINE L2 -6 3266 3158 2253 102 0 3 chr1 10038461 10038764 -232625589 + AluSx SINE Alu 1 302 -10 2253 97 0 3 chr1 10038765 10039063 -232625290 + AluSc SINE Alu 1 297 -12 1380 133 0 0 chr1 10039066 10039262 -232625091 + AluSg/x SINE Alu 100 295 -15 650 159 68 38 chr1 10039263 10039395 -232624958 - AluJo/FRAM SINE Alu -32 280 145 1905 112 16 20 chr1 10039396 10039566 -232624787 - AluSq SINE Alu -8 305 136 2303 83 0 10 chr1 10039566 10039868 -232624485 - AluY SINE Alu -12 299 1 2346 91 0 0 chr1 10039868 10040163 -232624190 - AluSg SINE Alu -13 297 2 1905 112 16 20 chr1 10040163 10040294 -232624059 - AluSq SINE Alu -175 138 4 285 204 57 45 chr1 10040589 10040600 -232623753 + AluJb SINE Alu 125 134 -168 1628 152 13 44 chr1 10040600 10040732 -232623621 + AluJo SINE Alu 1 136 -176 1988 128 0 3 chr1 10040732 10041014 -232623339 + AluSx SINE Alu 14 294 -18 2145 105 16 3 chr1 10041014 10041318 -232623035 + AluSp SINE Alu 1 309 -4 2163 113 7 0 chr1 10041318 10041628 -232622725 + AluSp SINE Alu 1 312 -1 1628 152 13 44 chr1 10041628 10041808 -232622545 + AluJo SINE Alu 133 305 -7 285 204 57 45 chr1 10041808 10041884 -232622469 + AluJb SINE Alu 134 213 -89 469 262 33 31 chr1 10042066 10042472 -232621881 + (TGAG)n Simple_repeat Simple_repeat 1 407 0 222 279 58 41 chr1 10042562 10042734 -232621619 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 202 260 0 52 chr1 10045653 10045749 -232618604 + (CCCTG)n Simple_repeat Simple_repeat 5 95 0 366 226 0 52 chr1 10049777 10049892 -232614461 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 261 262 6 27 chr1 10052724 10052907 -232611446 + (CACG)n Simple_repeat Simple_repeat 1 179 0 319 274 4 25 chr1 10052912 10053191 -232611162 + (CA)n Simple_repeat Simple_repeat 1 272 0 410 328 11 11 chr1 10053247 10053424 -232610929 + (CA)n Simple_repeat Simple_repeat 1 177 0 363 333 11 11 chr1 10053451 10053625 -232610728 + (CA)n Simple_repeat Simple_repeat 2 175 0 190 324 14 0 chr1 10058015 10058089 -232606264 - MIR SINE MIR -132 130 56 189 0 0 0 chr1 10059135 10059156 -232605197 + (CAGCC)n Simple_repeat Simple_repeat 1 21 0 294 274 60 18 chr1 10060588 10060756 -232603597 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 * 342 292 6 11 chr1 10060749 10060927 -232603426 + (TG)n Simple_repeat Simple_repeat 1 177 0 * 417 246 35 23 chr1 10060829 10061000 -232603353 + (TGAG)n Simple_repeat Simple_repeat 2 174 0 255 261 85 24 chr1 10061021 10061186 -232603167 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 2274 90 0 0 chr1 10061277 10061578 -232602775 - AluY SINE Alu -10 301 1 1303 172 13 89 chr1 10061578 10061881 -232602472 - AluJb SINE Alu -12 300 21 1663 149 57 4 chr1 10062038 10062319 -232602034 + AluJo SINE Alu 1 296 -16 2242 94 3 0 chr1 10062326 10062623 -232601730 + AluSx SINE Alu 1 298 -14 2162 88 10 7 chr1 10062730 10063025 -232601328 - AluY SINE Alu -15 296 1 1620 169 35 0 chr1 10063045 10063329 -232601024 - AluJo SINE Alu -15 297 4 2352 61 3 0 chr1 10063374 10063667 -232600686 - AluY SINE Alu -17 294 1 2113 112 7 0 chr1 10063845 10064140 -232600213 + AluSg SINE Alu 1 297 -13 414 142 142 19 chr1 10065198 10065304 -232599049 - MER20 DNA MER1_type -48 171 53 2021 121 7 0 chr1 10066284 10066573 -232597780 + AluSx SINE Alu 1 291 -21 186 200 147 21 chr1 10067011 10067106 -232597247 + L2 LINE L2 3133 3239 -33 2286 88 13 0 chr1 10069265 10069573 -232594780 + AluSx SINE Alu 1 312 0 240 265 0 15 chr1 10070888 10070912 -232593441 + AluJo SINE Alu 113 136 -166 1901 128 0 49 chr1 10070912 10071217 -232593136 + AluSx SINE Alu 1 290 -22 240 265 0 15 chr1 10071217 10071260 -232593093 + AluJo SINE Alu 136 179 -123 353 231 136 0 chr1 10071339 10071508 -232592845 + MER63 DNA MER1_type 825 1016 -45 1732 122 26 51 chr1 10071735 10072047 -232592306 - AluSx SINE Alu -7 305 2 915 76 0 0 chr1 10072048 10072166 -232592187 - AluSg/x SINE Alu -11 301 184 195 290 0 43 chr1 10072328 10072397 -232591956 + L2 LINE L2 2997 3062 -210 180 0 0 0 chr1 10072647 10072667 -232591686 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1627 111 43 0 chr1 10072681 10072915 -232591438 + AluSx SINE Alu 1 244 -68 312 61 41 0 chr1 10072990 10073039 -232591314 + AluJo SINE Alu 85 135 -167 1369 160 98 0 chr1 10073039 10073169 -232591184 + AluJo SINE Alu 1 117 -195 2493 41 3 22 chr1 10073169 10073485 -232590868 + AluY SINE Alu 1 310 -1 1369 160 98 0 chr1 10073485 10073598 -232590755 + AluJo SINE Alu 117 268 -44 2040 94 43 0 chr1 10073619 10073896 -232590457 + AluSx SINE Alu 1 289 -23 455 293 45 20 chr1 10077629 10077827 -232586526 + MER66B LTR ERV1 142 344 -142 1919 112 22 0 chr1 10077854 10078123 -232586230 + AluSx SINE Alu 1 275 -37 760 233 11 23 chr1 10078138 10078314 -232586039 + AluSq SINE Alu 137 310 -3 442 172 108 0 chr1 10078314 10078407 -232585946 + MER66B LTR ERV1 384 486 0 1400 84 0 0 chr1 10078441 10078620 -232585733 + AluY SINE Alu 1 179 -132 286 175 35 0 chr1 10078621 10078678 -232585675 + AluSp/q SINE Alu 240 298 -5 457 258 24 0 chr1 10078823 10078947 -232585406 - MER66-int LTR ERV1 -6337 339 213 2130 110 0 16 chr1 10079037 10079345 -232585008 - AluSc SINE Alu -6 303 1 930 124 0 28 chr1 10079346 10079491 -232584862 - FLAM_C SINE Alu -2 141 1 1024 189 32 57 chr1 10079491 10079912 -232584441 + MER66-int LTR ERV1 653 1114 -5562 2136 120 0 0 chr1 10079912 10080204 -232584149 - AluSc SINE Alu -17 292 1 279 67 0 22 chr1 10080204 10080249 -232584104 - Alu SINE Alu -258 44 1 * 339 62 15 15 chr1 10080249 10080293 -232584060 - Alu SINE Alu -264 44 1 344 47 16 16 chr1 10080293 10080337 -232584016 - AluS SINE Alu -259 44 1 299 78 16 16 chr1 10080337 10080381 -232583972 - AluS SINE Alu -259 44 1 292 79 16 16 chr1 10080381 10080425 -232583928 - Alu SINE Alu -264 44 1 1263 200 76 5 chr1 10080441 10080926 -232583427 + MER66-int LTR ERV1 1445 1999 -4677 2066 119 7 0 chr1 10083030 10083333 -232581020 + AluSc SINE Alu 1 305 -4 1144 144 0 0 chr1 10083400 10083581 -232580772 + AluSg/x SINE Alu 125 305 -7 2060 123 3 0 chr1 10083581 10083874 -232580479 + AluSp SINE Alu 1 294 -19 2272 76 10 0 chr1 10083878 10084167 -232580186 + AluY SINE Alu 1 292 -19 1439 178 14 51 chr1 10084338 10084465 -232579888 + AluJo SINE Alu 21 151 -161 2196 93 7 0 chr1 10084465 10084756 -232579597 + AluY SINE Alu 1 293 -18 1439 178 14 51 chr1 10084756 10084921 -232579432 + AluJo SINE Alu 151 302 -10 2141 105 7 0 chr1 10088632 10088928 -232575425 + AluSx SINE Alu 1 298 -14 2270 117 0 0 chr1 10089255 10089564 -232574789 + AluSx SINE Alu 1 309 -3 2044 116 0 23 chr1 10089564 10089874 -232574479 + AluSc SINE Alu 1 303 -6 2101 96 6 38 chr1 10090684 10090997 -232573356 + AluSx SINE Alu 1 303 -9 347 100 0 0 chr1 10090998 10091048 -232573305 + Alu SINE Alu 1 50 -258 2157 112 3 0 chr1 10091058 10091352 -232573001 - AluSx SINE Alu -16 296 2 2064 103 3 10 chr1 10091359 10091534 -232572819 - AluSq SINE Alu -4 309 135 2471 43 7 3 chr1 10091534 10091834 -232572519 - AluY SINE Alu -10 301 1 2064 103 3 10 chr1 10091834 10091949 -232572404 - AluSq SINE Alu -178 135 21 814 215 6 0 chr1 10092086 10092244 -232572109 - FRAM SINE Alu -16 160 2 609 196 43 43 chr1 10092249 10092367 -232571986 + MER20 DNA MER1_type 57 177 -42 1504 195 17 14 chr1 10092367 10092664 -232571689 + AluJo SINE Alu 1 298 -14 609 196 43 43 chr1 10092664 10092708 -232571645 + MER20 DNA MER1_type 176 219 0 278 238 24 12 chr1 10093639 10093723 -232570630 + (CTGGGG)n Simple_repeat Simple_repeat 6 90 0 189 0 0 0 chr1 10094071 10094092 -232570261 + (CCG)n Simple_repeat Simple_repeat 2 22 0 219 167 42 21 chr1 10095739 10095787 -232568566 + L3 LINE CR1 612 660 -917 918 98 15 8 chr1 10097490 10097622 -232566731 + AluSp SINE Alu 1 133 -180 2108 123 3 3 chr1 10097634 10097943 -232566410 + AluY SINE Alu 1 309 -2 2287 93 3 0 chr1 10098029 10098329 -232566024 - AluY SINE Alu -10 301 1 1551 167 20 30 chr1 10098633 10098932 -232565421 - AluSx SINE Alu -16 296 1 2395 69 0 3 chr1 10098935 10099241 -232565112 - AluY SINE Alu -6 305 1 1911 122 4 0 chr1 10099281 10099559 -232564794 - AluY SINE Alu -5 306 28 1899 121 46 0 chr1 10099781 10100062 -232564291 - AluSg SINE Alu -16 294 1 787 193 12 30 chr1 10100067 10100233 -232564120 - AluJo/FRAM SINE Alu -16 296 134 1633 182 19 0 chr1 10100233 10100540 -232563813 - 7SLRNA srpRNA srpRNA -7 313 1 298 211 53 0 chr1 10100782 10100858 -232563495 + AluJ/FRAM SINE Alu 223 302 0 1885 140 20 0 chr1 10100861 10101154 -232563199 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr1 10101839 10101862 -232562491 + GC_rich Low_complexity Low_complexity 1 23 0 26 82 0 0 chr1 10102363 10102424 -232561929 + GC_rich Low_complexity Low_complexity 1 61 0 340 210 0 0 chr1 10102505 10102586 -232561767 - AluSg SINE Alu 0 300 220 726 149 182 7 chr1 10102587 10102741 -232561612 - AluSg SINE Alu -124 186 6 1670 143 0 21 chr1 10102789 10103076 -232561277 + AluJb SINE Alu 15 295 -17 304 214 208 45 chr1 10103268 10103446 -232560907 - L1MC4 LINE L1 -64 7978 7772 1728 130 0 0 chr1 10103550 10103804 -232560549 - AluSx SINE Alu 0 312 59 851 85 15 31 chr1 10103821 10103951 -232560402 + AluSp/q SINE Alu 167 294 -19 1755 131 75 0 chr1 10103954 10104236 -232560117 + AluSx SINE Alu 1 303 -9 1256 153 157 0 chr1 10104240 10104476 -232559877 - AluJb SINE Alu -19 293 21 646 268 36 54 chr1 10104551 10104594 -232559759 - MER74B LTR ERVL -82 540 498 8041 57 2 0 chr1 10104594 10105561 -232558792 + LTR5 LTR ERVK 1 969 0 646 268 36 54 chr1 10105561 10105721 -232558632 - MER74B LTR ERVL -124 498 337 2204 101 0 3 chr1 10105721 10106019 -232558334 + AluSq SINE Alu 1 297 -16 2284 104 0 0 chr1 10106019 10106326 -232558027 + AluY SINE Alu 1 307 -4 646 268 36 54 chr1 10106326 10106456 -232557897 - MER74B LTR ERVL -283 339 211 225 289 87 59 chr1 10106639 10106955 -232557398 + L1M3e LINE L1 656 1544 -5486 3773 47 47 4 chr1 10107039 10107509 -232556844 - LTR2B LTR ERV1 0 490 1 21774 119 15 7 chr1 10107509 10111022 -232553331 - Harlequin LTR ERV1 -1 6895 3352 5770 61 44 11 chr1 10111021 10111558 -232552795 - Harlequin LTR ERV1 -4322 2574 1989 * 2640 27 0 0 chr1 10111558 10111859 -232552494 + AluY SINE Alu 1 301 -10 5770 61 44 11 chr1 10111859 10112292 -232552061 - Harlequin LTR ERV1 -4907 1989 1572 * 5980 85 20 6 chr1 10112278 10113165 -232551188 - Harlequin LTR ERV1 -5996 900 1 3928 32 42 11 chr1 10113165 10113640 -232550713 - LTR2B LTR ERV1 0 490 1 21 0 0 0 chr1 10115021 10115042 -232549311 + GC_rich Low_complexity Low_complexity 1 21 0 208 203 0 94 chr1 10115429 10115493 -232548860 + (CCCCG)n Simple_repeat Simple_repeat 1 58 0 272 248 76 19 chr1 10117169 10117274 -232547079 + L2 LINE L2 3102 3212 -101 372 234 80 7 chr1 10117301 10117438 -232546915 - REP3 LTR ERV -294 268 122 3119 152 56 2 chr1 10117560 10118153 -232546200 + MER41B LTR ERV1 4 628 -7 229 200 20 0 chr1 10118159 10118209 -232546144 + L2 LINE L2 3220 3270 -2 1864 143 20 3 chr1 10118266 10118560 -232545793 - AluSx SINE Alu -13 299 1 2014 119 3 22 chr1 10118563 10118875 -232545478 - AluSx SINE Alu -6 306 1 1051 96 0 0 chr1 10118875 10119010 -232545343 - AluSq/x SINE Alu -176 136 2 2260 112 0 6 chr1 10119227 10119539 -232544814 + AluSq SINE Alu 1 310 -3 1662 176 3 3 chr1 10119600 10119889 -232544464 + AluJb SINE Alu 2 290 -22 1995 100 10 20 chr1 10119968 10120267 -232544086 + AluSc SINE Alu 1 296 -13 320 291 0 39 chr1 10121787 10121969 -232542384 + C-rich Low_complexity Low_complexity 4 178 0 343 224 3 50 chr1 10121987 10122328 -232542025 + C-rich Low_complexity Low_complexity 1 325 0 202 205 26 39 chr1 10124466 10124544 -232539809 + (CCCCG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr1 10127156 10127180 -232537173 + (CGAG)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr1 10127289 10127312 -232537041 + GC_rich Low_complexity Low_complexity 1 23 0 215 170 38 0 chr1 10127373 10127426 -232536927 + (CGGG)n Simple_repeat Simple_repeat 1 55 0 28 61 0 0 chr1 10131179 10131228 -232533125 + GC_rich Low_complexity Low_complexity 1 49 0 2300 46 0 3 chr1 10134395 10134704 -232529649 - AluY SINE Alu 0 308 1 1945 113 25 0 chr1 10134858 10135133 -232529220 - AluSx SINE Alu -30 282 1 216 0 0 0 chr1 10135135 10135159 -232529194 + (T)n Simple_repeat Simple_repeat 1 24 0 1874 153 33 0 chr1 10135159 10135460 -232528893 - AluJb SINE Alu 0 312 2 674 197 16 8 chr1 10135464 10135591 -232528762 - FLAM_C SINE Alu -5 128 1 1206 163 80 73 chr1 10136804 10137104 -232527249 - AluJo SINE Alu -10 302 1 1949 119 27 7 chr1 10137180 10137474 -232526879 + AluSg SINE Alu 1 300 -10 1544 175 26 23 chr1 10137483 10137622 -232526731 + AluSx SINE Alu 1 138 -174 2130 104 3 3 chr1 10137622 10137919 -232526434 + AluSq SINE Alu 3 299 -14 1544 175 26 23 chr1 10137919 10138087 -232526266 + AluSx SINE Alu 138 309 -3 894 78 0 8 chr1 10138179 10138307 -232526046 - FLAM_C SINE Alu -16 127 1 484 95 0 40 chr1 10138309 10138383 -232525970 - Alu SINE Alu -19 292 222 1016 115 48 0 chr1 10138383 10138570 -232525783 - LTR10A LTR ERV1 0 609 366 2386 65 20 0 chr1 10138570 10138864 -232525489 - AluY SINE Alu -11 300 1 2120 115 3 3 chr1 10138864 10139168 -232525185 - AluSx SINE Alu -8 304 1 579 131 0 0 chr1 10139168 10139267 -232525086 - HERV17 LTR ERV1 -5187 1709 1611 * 1302 158 3 81 chr1 10139234 10139299 -232525054 - HERV17 LTR ERV1 -3313 4472 4404 2557 50 0 0 chr1 10139299 10139600 -232524753 + AluY SINE Alu 1 301 -10 1302 158 3 81 chr1 10139600 10139734 -232524619 - HERV17 LTR ERV1 -3381 4404 4303 1998 113 0 53 chr1 10139734 10140054 -232524299 - AluSx SINE Alu -9 303 1 1302 158 3 81 chr1 10140054 10140163 -232524190 - HERV17 LTR ERV1 -3482 4303 4187 1883 121 24 17 chr1 10140234 10140532 -232523821 - AluY SINE Alu -10 301 2 578 140 26 88 chr1 10140533 10140873 -232523480 - HERV17 LTR ERV1 -5760 1136 704 * 1380 186 69 9 chr1 10140860 10141194 -232523159 - HERV17 LTR ERV1 -4918 1731 1378 2329 58 17 0 chr1 10141509 10141803 -232522550 + AluY SINE Alu 2 300 -11 2160 82 21 7 chr1 10142506 10142797 -232521556 - AluY SINE Alu -16 295 1 2157 116 3 0 chr1 10142805 10143107 -232521246 - AluSx SINE Alu -9 303 1 1078 129 6 0 chr1 10144126 10144289 -232520064 + AluSc SINE Alu 146 309 0 302 271 68 0 chr1 10144289 10144407 -232519946 + HUERS-P1 LTR ERV1 2277 2402 -3861 1796 159 3 0 chr1 10144667 10144963 -232519390 - AluSx SINE Alu -15 297 1 940 134 0 0 chr1 10144963 10145097 -232519256 - AluSq/x SINE Alu -177 135 2 2059 125 0 3 chr1 10145105 10145402 -232518951 - AluSp SINE Alu -17 296 1 2475 65 0 7 chr1 10146395 10146705 -232517648 + AluY SINE Alu 1 308 -3 2455 64 0 6 chr1 10148774 10149085 -232515268 + AluY SINE Alu 1 309 -2 1884 136 4 0 chr1 10149134 10149437 -232514916 - AluSc SINE Alu 0 304 1 1892 155 0 7 chr1 10149439 10149742 -232514611 - AluSx SINE Alu -11 301 1 1904 123 17 17 chr1 10149748 10150041 -232514312 - AluSp SINE Alu -20 293 1 780 191 0 14 chr1 10150041 10150182 -232514171 - AluJb SINE Alu -171 141 3 1860 134 20 0 chr1 10150188 10150480 -232513873 - AluSx SINE Alu -14 298 1 2087 100 3 32 chr1 10151531 10151842 -232512511 - AluSp SINE Alu -11 302 1 2054 126 0 0 chr1 10152655 10152949 -232511404 - AluSq SINE Alu -19 294 1 296 161 18 0 chr1 10154944 10155000 -232509353 - MLT1I LTR MaLR 0 409 353 1554 206 0 13 chr1 10155087 10155388 -232508965 + AluJb SINE Alu 1 297 -15 1971 121 10 10 chr1 10155396 10155686 -232508667 + AluSx SINE Alu 13 302 -10 281 261 203 7 chr1 10155736 10155874 -232508479 - MLT1A1 LTR MaLR -73 292 128 2856 224 49 42 chr1 10155916 10155951 -232508402 - L1M4 LINE L1 -1434 4712 4679 1964 100 0 0 chr1 10155951 10156211 -232508142 + AluSx SINE Alu 2 261 -51 2856 224 49 42 chr1 10156211 10156345 -232508008 - L1M4 LINE L1 -1467 4679 4547 2138 102 0 10 chr1 10156345 10156650 -232507703 - AluSx SINE Alu -10 302 1 2856 224 49 42 chr1 10156650 10156771 -232507582 - L1M4 LINE L1 -1599 4547 4428 2431 72 7 0 chr1 10156771 10157078 -232507275 + AluY SINE Alu 1 309 -2 2856 224 49 42 chr1 10157078 10157470 -232506883 - L1M4 LINE L1 -1718 4428 4040 1805 113 4 0 chr1 10157470 10157726 -232506627 + AluSp SINE Alu 49 305 -8 1968 92 58 20 chr1 10157727 10158019 -232506334 + AluY SINE Alu 1 303 -8 2856 224 49 42 chr1 10158019 10158453 -232505900 - L1M4 LINE L1 -2105 4041 3510 292 169 31 15 chr1 10158454 10158519 -232505834 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr1 10158581 10158645 -232505708 - L1MC3 LINE L1 -225 7560 7496 1700 123 22 75 chr1 10160448 10160766 -232503587 + AluSq SINE Alu 1 301 -12 854 200 0 25 chr1 10160766 10160926 -232503427 + AluSg/x SINE Alu 138 293 -17 842 102 16 23 chr1 10161009 10161137 -232503216 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr1 10161139 10161230 -232503123 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr1 10161230 10161663 -232502690 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr1 10161663 10161874 -232502479 - AluSx SINE Alu -104 208 1 489 134 24 0 chr1 10161879 10161961 -232502392 - Alu SINE Alu 0 310 227 2137 158 140 0 chr1 10161980 10162320 -232502033 - LTR10A LTR ERV1 -62 547 119 1829 135 204 13 chr1 10162320 10162698 -232501655 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr1 10162698 10162837 -232501516 - LTR10A LTR ERV1 -490 119 1 25 35 0 52 chr1 10163388 10163446 -232500907 + GC_rich Low_complexity Low_complexity 1 55 0 189 68 68 0 chr1 10163559 10163603 -232500750 + (CGGGG)n Simple_repeat Simple_repeat 1 47 0 680 135 10 0 chr1 10164123 10164227 -232500126 - AluSq/x SINE Alu -208 105 1 1171 194 0 5 chr1 10165946 10166168 -232498185 - AluSg/x SINE Alu -7 305 85 1721 145 39 0 chr1 10166171 10166454 -232497899 - AluSx SINE Alu -18 294 1 2028 108 20 7 chr1 10167481 10167787 -232496566 - AluSq SINE Alu 0 313 4 1776 163 20 0 chr1 10167789 10168089 -232496264 - AluSx SINE Alu -6 306 1 318 339 6 27 chr1 10168999 10169182 -232495171 + (CACG)n Simple_repeat Simple_repeat 1 179 0 * 494 279 6 6 chr1 10169094 10169273 -232495080 + (CA)n Simple_repeat Simple_repeat 1 179 0 315 238 17 0 chr1 10169301 10169473 -232494880 + (CA)n Simple_repeat Simple_repeat 2 176 0 383 279 0 53 chr1 10169497 10169687 -232494666 + (CA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chr1 10169744 10169768 -232494585 + (CA)n Simple_repeat Simple_repeat 2 25 0 2057 114 0 10 chr1 10170308 10170605 -232493748 - AluSg SINE Alu -16 294 1 1170 144 35 5 chr1 10171886 10172088 -232492265 + AluJb SINE Alu 85 292 -20 2148 76 7 26 chr1 10172100 10172404 -232491949 + AluY SINE Alu 12 309 -2 1827 118 3 88 chr1 10172777 10173106 -232491247 - AluSx SINE Alu -11 301 1 2058 138 0 3 chr1 10173113 10173418 -232490935 - AluSp SINE Alu -9 304 1 2416 67 0 0 chr1 10176491 10176791 -232487562 - AluY SINE Alu -11 300 1 1470 195 21 7 chr1 10176803 10177085 -232487268 - AluJb SINE Alu -26 286 1 1948 143 13 0 chr1 10177089 10177396 -232486957 - AluSx SINE Alu -1 311 1 2157 124 0 10 chr1 10179032 10179339 -232485014 - AluSq SINE Alu -8 305 2 270 196 18 0 chr1 10181187 10181243 -232483110 - MLT1I LTR MaLR 0 409 353 1568 191 20 10 chr1 10181330 10181624 -232482729 + AluJb SINE Alu 1 297 -15 2805 3 0 0 chr1 10181625 10181933 -232482420 + AluYa5 SINE Alu 1 308 -3 1646 164 3 24 chr1 10181950 10182242 -232482111 + AluSx SINE Alu 4 289 -23 2148 112 7 0 chr1 10182250 10182555 -232481798 + AluSc SINE Alu 1 307 -2 2334 80 0 16 chr1 10182569 10182883 -232481470 + AluY SINE Alu 1 309 -2 2360 80 0 6 chr1 10184623 10184934 -232479419 + AluY SINE Alu 1 309 -2 1884 136 4 0 chr1 10184983 10185286 -232479067 - AluSc SINE Alu 0 304 1 1892 155 0 7 chr1 10185288 10185591 -232478762 - AluSx SINE Alu -11 301 1 1904 123 17 17 chr1 10185597 10185890 -232478463 - AluSp SINE Alu -20 293 1 780 191 0 14 chr1 10185890 10186031 -232478322 - AluJb SINE Alu -171 141 3 1860 134 20 0 chr1 10186037 10186329 -232478024 - AluSx SINE Alu -14 298 1 2087 100 3 32 chr1 10187380 10187691 -232476662 - AluSp SINE Alu -11 302 1 2054 126 0 0 chr1 10188504 10188798 -232475555 - AluSq SINE Alu -19 294 1 296 161 18 0 chr1 10190793 10190849 -232473504 - MLT1I LTR MaLR 0 409 353 1554 206 0 13 chr1 10190936 10191237 -232473116 + AluJb SINE Alu 1 297 -15 1971 121 10 10 chr1 10191245 10191535 -232472818 + AluSx SINE Alu 13 302 -10 281 261 203 7 chr1 10191585 10191723 -232472630 - MLT1A1 LTR MaLR -73 292 128 2856 224 49 42 chr1 10191765 10191800 -232472553 - L1M4 LINE L1 -1434 4712 4679 1964 100 0 0 chr1 10191800 10192060 -232472293 + AluSx SINE Alu 2 261 -51 2856 224 49 42 chr1 10192060 10192194 -232472159 - L1M4 LINE L1 -1467 4679 4547 2152 98 0 10 chr1 10192194 10192499 -232471854 - AluSx SINE Alu -10 302 1 2856 224 49 42 chr1 10192499 10192620 -232471733 - L1M4 LINE L1 -1599 4547 4428 2385 69 10 0 chr1 10192620 10192924 -232471429 + AluY SINE Alu 1 307 -4 2856 224 49 42 chr1 10192924 10193316 -232471037 - L1M4 LINE L1 -1718 4428 4040 1812 113 4 0 chr1 10193316 10193573 -232470780 + AluSp SINE Alu 49 306 -7 1968 92 58 20 chr1 10193574 10193866 -232470487 + AluY SINE Alu 1 303 -8 2856 224 49 42 chr1 10193866 10194300 -232470053 - L1M4 LINE L1 -2105 4041 3510 292 169 31 15 chr1 10194301 10194366 -232469987 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr1 10194428 10194492 -232469861 - L1MC3 LINE L1 -225 7560 7496 1759 123 23 52 chr1 10196296 10196606 -232467747 + AluSq SINE Alu 1 301 -12 811 194 0 25 chr1 10196606 10196766 -232467587 + AluSg/x SINE Alu 140 295 -17 842 102 16 23 chr1 10196849 10196977 -232467376 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr1 10196979 10197070 -232467283 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr1 10197070 10197503 -232466850 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr1 10197503 10197714 -232466639 - AluSx SINE Alu -104 208 1 489 134 24 0 chr1 10197719 10197801 -232466552 - Alu SINE Alu 0 310 227 2137 158 140 0 chr1 10197820 10198160 -232466193 - LTR10A LTR ERV1 -62 547 119 1808 133 207 13 chr1 10198160 10198537 -232465816 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr1 10198537 10198676 -232465677 - LTR10A LTR ERV1 -490 119 1 24 47 0 47 chr1 10199225 10199289 -232465064 + GC_rich Low_complexity Low_complexity 1 61 0 208 111 67 0 chr1 10199359 10199429 -232464924 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 1844 106 41 10 chr1 10200114 10200406 -232463947 - AluSg SINE Alu -7 303 3 1865 50 50 0 chr1 10200416 10200656 -232463697 - AluY SINE Alu 0 311 60 1108 39 0 0 chr1 10200656 10200783 -232463570 - AluY SINE Alu -176 135 9 1830 152 0 0 chr1 10200791 10201081 -232463272 - AluSc SINE Alu -19 290 1 516 231 0 0 chr1 10201344 10201452 -232462901 - FLAM_A SINE Alu -15 127 20 2324 72 13 0 chr1 10201469 10201776 -232462577 - AluY SINE Alu 0 311 1 1925 130 3 7 chr1 10201787 10202087 -232462266 - AluSx SINE Alu -13 299 1 2173 86 7 0 chr1 10203803 10204095 -232460258 - AluY SINE Alu -17 294 1 1346 149 0 0 chr1 10204102 10204310 -232460043 - AluSg/x SINE Alu -20 292 85 935 167 61 5 chr1 10204313 10204511 -232459842 - AluSg/x SINE Alu -17 295 87 2077 79 18 0 chr1 10204965 10205301 -232459052 - AluSp SINE Alu 0 341 1 994 70 8 0 chr1 10205305 10205434 -232458919 - AluSp SINE Alu -183 130 1 1834 144 17 0 chr1 10205436 10205727 -232458626 - AluSx SINE Alu -16 296 1 435 309 8 6 chr1 10206682 10207104 -232457249 + (CA)n Simple_repeat Simple_repeat 1 422 0 283 300 10 3 chr1 10207135 10207455 -232456898 + (CA)n Simple_repeat Simple_repeat 1 322 0 325 314 5 32 chr1 10207476 10207661 -232456692 + (CA)n Simple_repeat Simple_repeat 1 180 0 2035 118 0 10 chr1 10208605 10208902 -232455451 - AluSg SINE Alu -16 294 1 1201 171 15 0 chr1 10210233 10210438 -232453915 + AluJb SINE Alu 85 292 -20 1428 134 36 82 chr1 10210439 10210745 -232453608 + AluSc SINE Alu 1 292 -17 1057 165 0 0 chr1 10210745 10210915 -232453438 + AluSp SINE Alu 134 303 -10 1747 122 3 91 chr1 10210917 10211237 -232453116 + AluSx SINE Alu 1 292 -20 1883 112 14 20 chr1 10211612 10211908 -232452445 - AluY SINE Alu -17 294 1 835 116 16 16 chr1 10211912 10212041 -232452312 - AluSp SINE Alu -172 141 13 2269 75 7 0 chr1 10214636 10214931 -232449422 + AluY SINE Alu 2 298 -13 1687 143 4 8 chr1 10215424 10215682 -232448671 - AluSq SINE Alu -56 257 1 965 183 106 84 chr1 10215688 10215905 -232448448 - AluJb SINE Alu -20 292 66 2099 110 0 0 chr1 10215905 10216196 -232448157 + AluSg SINE Alu 1 291 -19 965 183 106 84 chr1 10216196 10216251 -232448102 - AluJb SINE Alu -246 66 14 22 35 0 0 chr1 10216262 10216291 -232448062 + AT_rich Low_complexity Low_complexity 1 29 0 1286 121 15 5 chr1 10216291 10216489 -232447864 - AluSx SINE Alu -112 200 1 1952 132 10 0 chr1 10218675 10218964 -232445389 + AluSc SINE Alu 1 292 -17 269 196 18 0 chr1 10219179 10219235 -232445118 - MLT1I LTR MaLR 0 409 353 1647 190 0 0 chr1 10219333 10219612 -232444741 + AluJb SINE Alu 9 287 -25 1880 144 10 0 chr1 10219632 10219931 -232444422 + AluSx SINE Alu 7 308 -4 1776 132 10 46 chr1 10219935 10220080 -232444273 + AluSx SINE Alu 1 131 -181 2226 98 0 3 chr1 10220080 10220385 -232443968 + AluSg SINE Alu 1 304 -6 1776 132 10 46 chr1 10220385 10220542 -232443811 + AluSx SINE Alu 131 292 -20 849 226 76 4 chr1 10220585 10220860 -232443493 - L1 LINE L1 -1903 4243 3949 934 92 0 0 chr1 10220920 10221040 -232443313 - AluSq/x SINE Alu -192 120 1 1498 230 72 0 chr1 10221055 10221473 -232442880 - L1 LINE L1 -2191 3955 3508 252 219 16 16 chr1 10221472 10221536 -232442817 - L1MC3 LINE L1 -13 7772 7709 * 250 203 47 31 chr1 10221599 10221663 -232442690 - L1MC3 LINE L1 -225 7560 7496 1206 163 80 73 chr1 10224629 10224929 -232439424 - AluJo SINE Alu -10 302 1 1939 114 28 7 chr1 10225005 10225294 -232439059 + AluSg SINE Alu 1 295 -15 1525 179 26 23 chr1 10225304 10225443 -232438910 + AluSx SINE Alu 1 138 -174 2099 111 3 3 chr1 10225443 10225740 -232438613 + AluSq SINE Alu 3 299 -14 1525 179 26 23 chr1 10225740 10225908 -232438445 + AluSx SINE Alu 138 309 -3 918 70 0 8 chr1 10226000 10226128 -232438225 - FLAM_C SINE Alu -16 127 1 433 71 57 43 chr1 10226130 10226200 -232438153 - Alu SINE Alu -19 292 222 968 118 51 0 chr1 10226200 10226377 -232437976 - LTR10A LTR ERV1 0 609 376 2536 62 0 0 chr1 10226379 10226687 -232437666 - AluY SINE Alu -3 308 1 180 0 0 0 chr1 10226696 10226716 -232437637 + (T)n Simple_repeat Simple_repeat 1 20 0 1703 108 13 0 chr1 10226716 10226948 -232437405 - AluSg SINE Alu -75 235 1 2236 92 3 3 chr1 10227001 10227305 -232437048 - AluSx SINE Alu -8 304 1 2107 102 3 13 chr1 10227305 10227609 -232436744 - AluSx SINE Alu -11 301 1 514 91 0 109 chr1 10227609 10227682 -232436671 - Harlequin LTR ERV1 -5187 1709 1650 2292 54 3 10 chr1 10227682 10227980 -232436373 + AluY SINE Alu 1 296 -15 514 91 0 109 chr1 10227980 10228016 -232436337 - Harlequin LTR ERV1 -5246 1650 1612 321 100 0 0 chr1 10228016 10228066 -232436287 + (TA)n Simple_repeat Simple_repeat 2 51 0 726 218 39 10 chr1 10228083 10228289 -232436064 + AluY SINE Alu 1 212 -99 21 57 0 0 chr1 10228461 10228496 -232435857 + GC_rich Low_complexity Low_complexity 1 35 0 312 200 0 0 chr1 10228518 10228598 -232435755 + G-rich Low_complexity Low_complexity 3 82 0 2308 67 3 3 chr1 10229100 10229399 -232434954 + AluY SINE Alu 1 299 -12 1244 147 0 28 chr1 10229399 10229581 -232434772 + AluSq SINE Alu 134 312 -1 916 208 0 0 chr1 10229581 10229740 -232434613 + AluJo/FRAM SINE Alu 137 295 -7 255 319 104 15 chr1 10229777 10230047 -232434306 - L1MEd LINE L1 -5206 913 620 1776 144 14 7 chr1 10230246 10230538 -232433815 - AluJb SINE Alu -18 294 1 355 299 58 39 chr1 10230541 10230695 -232433658 - L1MEd LINE L1 -5949 170 14 25 0 0 0 chr1 10231210 10231235 -232433118 + GC_rich Low_complexity Low_complexity 1 25 0 202 205 26 39 chr1 10233376 10233454 -232430899 + (CCCCG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr1 10236053 10236077 -232428276 + (CGAG)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr1 10236184 10236207 -232428146 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 10236299 10236320 -232428033 + GC_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr1 10240062 10240111 -232424242 + GC_rich Low_complexity Low_complexity 1 49 0 2312 43 0 3 chr1 10243308 10243617 -232420736 - AluY SINE Alu 0 308 1 1959 109 25 0 chr1 10243771 10244046 -232420307 - AluSx SINE Alu -30 282 1 1743 161 35 0 chr1 10244048 10244333 -232420020 - AluJb SINE Alu -16 296 2 674 197 16 8 chr1 10244337 10244464 -232419889 - FLAM_C SINE Alu -5 128 1 1206 163 80 73 chr1 10245677 10245977 -232418376 - AluJo SINE Alu -10 302 1 1949 119 27 7 chr1 10246053 10246347 -232418006 + AluSg SINE Alu 1 300 -10 1544 175 26 23 chr1 10246356 10246495 -232417858 + AluSx SINE Alu 1 138 -174 2130 104 3 3 chr1 10246495 10246792 -232417561 + AluSq SINE Alu 3 299 -14 1544 175 26 23 chr1 10246792 10246960 -232417393 + AluSx SINE Alu 138 309 -3 894 78 0 8 chr1 10247052 10247180 -232417173 - FLAM_C SINE Alu -16 127 1 484 95 0 40 chr1 10247182 10247256 -232417097 - Alu SINE Alu -19 292 222 1016 115 48 0 chr1 10247256 10247443 -232416910 - LTR10A LTR ERV1 0 609 366 2386 65 20 0 chr1 10247443 10247737 -232416616 - AluY SINE Alu -11 300 1 2120 115 3 3 chr1 10247737 10248041 -232416312 - AluSx SINE Alu -8 304 1 579 131 0 0 chr1 10248041 10248140 -232416213 - Harlequin LTR ERV1 -5187 1709 1611 2341 73 3 3 chr1 10248172 10248475 -232415878 + AluY SINE Alu 1 303 -8 243 0 0 0 chr1 10249184 10249211 -232415142 + (CATTG)n Simple_repeat Simple_repeat 2 28 0 2029 135 6 3 chr1 10249211 10249515 -232414838 - AluSx SINE Alu -4 308 1 2286 88 3 3 chr1 10249597 10249904 -232414449 + AluSp SINE Alu 1 307 -6 198 0 0 0 chr1 10250158 10250180 -232414173 + (TG)n Simple_repeat Simple_repeat 1 22 0 8224 51 20 5 chr1 10250195 10251187 -232413166 - LTR13 LTR ERVK 0 1007 1 1907 140 0 7 chr1 10251187 10251479 -232412874 + AluSx SINE Alu 8 297 -15 296 235 52 17 chr1 10251492 10251607 -232412746 - L1 LINE L1 -1462 4684 4566 708 254 55 0 chr1 10251631 10251796 -232412557 - FRAM SINE Alu -9 167 1 2858 219 49 46 chr1 10251796 10252005 -232412348 - L1 LINE L1 -1690 4456 4249 2398 82 0 0 chr1 10252005 10252308 -232412045 - AluY SINE Alu 0 311 9 2858 219 49 46 chr1 10252308 10253042 -232411311 - L1 LINE L1 -1897 4249 3510 262 219 31 16 chr1 10253043 10253107 -232411246 - L1MC3 LINE L1 -12 7773 7709 237 197 49 33 chr1 10253173 10253234 -232411119 - L1MC3 LINE L1 -228 7557 7496 1842 128 23 20 chr1 10255034 10255338 -232409015 + AluSq SINE Alu 1 305 -8 853 171 12 24 chr1 10255338 10255502 -232408851 + AluSg/x SINE Alu 138 299 -11 856 93 0 16 chr1 10255583 10255712 -232408641 - FLAM_C SINE Alu -16 127 1 1976 118 30 3 chr1 10255722 10256026 -232408327 - AluSx SINE Alu 0 312 1 481 128 23 35 chr1 10256030 10256116 -232408237 - Alu SINE Alu -5 305 221 2629 152 79 0 chr1 10256130 10256637 -232407716 - LTR10A LTR ERV1 -62 547 1 25 35 0 52 chr1 10257543 10257601 -232406752 + GC_rich Low_complexity Low_complexity 1 55 0 189 0 0 0 chr1 10257714 10257735 -232406618 + (CGGGG)n Simple_repeat Simple_repeat 2 22 0 1831 110 41 10 chr1 10258445 10258737 -232405616 - AluSg SINE Alu -7 303 3 1850 50 50 0 chr1 10258747 10258985 -232405368 - AluY SINE Alu -2 309 60 1108 39 0 0 chr1 10258985 10259112 -232405241 - AluY SINE Alu -176 135 9 1844 148 0 0 chr1 10259120 10259410 -232404943 - AluSc SINE Alu -19 290 1 516 231 0 0 chr1 10259673 10259781 -232404572 - FLAM_A SINE Alu -15 127 20 2347 65 13 0 chr1 10259799 10260106 -232404247 - AluY SINE Alu 0 311 1 1925 130 3 7 chr1 10260117 10260417 -232403936 - AluSx SINE Alu -13 299 1 2173 86 7 0 chr1 10262132 10262424 -232401929 - AluY SINE Alu -17 294 1 1346 149 0 0 chr1 10262431 10262639 -232401714 - AluSg/x SINE Alu -20 292 85 935 167 61 5 chr1 10262642 10262840 -232401513 - AluSg/x SINE Alu -17 293 85 2075 79 18 0 chr1 10263294 10263620 -232400733 - AluSp SINE Alu 0 331 1 1834 144 17 0 chr1 10263622 10263913 -232400440 - AluSx SINE Alu -16 296 1 451 303 8 6 chr1 10264870 10265292 -232399061 + (CA)n Simple_repeat Simple_repeat 1 422 0 283 300 10 3 chr1 10265323 10265643 -232398710 + (CA)n Simple_repeat Simple_repeat 1 322 0 300 319 5 32 chr1 10265664 10265849 -232398504 + (CA)n Simple_repeat Simple_repeat 1 180 0 2057 114 0 10 chr1 10266793 10267090 -232397263 - AluSg SINE Alu -16 294 1 1201 171 15 0 chr1 10268422 10268627 -232395726 + AluJb SINE Alu 85 292 -20 819 115 23 8 chr1 10268628 10268758 -232395595 + AluY SINE Alu 1 132 -179 1417 152 24 110 chr1 10268772 10269107 -232395246 + AluSp SINE Alu 1 306 -7 1747 122 3 91 chr1 10269107 10269426 -232394927 + AluSx SINE Alu 1 292 -20 1961 112 10 17 chr1 10269801 10270097 -232394256 - AluY SINE Alu -17 294 1 835 116 16 16 chr1 10270101 10270230 -232394123 - AluSp SINE Alu -172 141 13 2269 75 7 0 chr1 10272826 10273121 -232391232 + AluY SINE Alu 2 298 -13 1687 143 4 8 chr1 10273614 10273872 -232390481 - AluSq SINE Alu -56 257 1 965 183 106 84 chr1 10273878 10274095 -232390258 - AluJb SINE Alu -20 292 66 2076 114 0 0 chr1 10274095 10274385 -232389968 + AluSg SINE Alu 1 290 -20 965 183 106 84 chr1 10274385 10274440 -232389913 - AluJb SINE Alu -246 66 14 22 35 0 0 chr1 10274451 10274480 -232389873 + AT_rich Low_complexity Low_complexity 1 29 0 1286 121 15 5 chr1 10274480 10274678 -232389675 - AluSq SINE Alu -113 200 1 1952 132 10 0 chr1 10276870 10277159 -232387194 + AluSc SINE Alu 1 292 -17 269 196 18 0 chr1 10277374 10277430 -232386923 - MLT1I LTR MaLR 0 409 353 1647 190 0 0 chr1 10277528 10277807 -232386546 + AluJb SINE Alu 9 287 -25 1856 147 10 0 chr1 10277827 10278126 -232386227 + AluSx SINE Alu 7 308 -4 1811 133 10 43 chr1 10278130 10278274 -232386079 + AluSx SINE Alu 1 131 -181 2200 102 0 3 chr1 10278274 10278578 -232385775 + AluSg SINE Alu 1 303 -7 1811 133 10 43 chr1 10278578 10278735 -232385618 + AluSx SINE Alu 131 292 -20 849 226 76 4 chr1 10278778 10279053 -232385300 - L1 LINE L1 -1903 4243 3949 934 92 0 0 chr1 10279113 10279233 -232385120 - AluSq/x SINE Alu -193 120 1 1498 230 72 0 chr1 10279248 10279666 -232384687 - L1 LINE L1 -2191 3955 3508 252 219 16 16 chr1 10279665 10279729 -232384624 - L1MC3 LINE L1 -13 7772 7709 * 250 203 47 31 chr1 10279792 10279856 -232384497 - L1MC3 LINE L1 -225 7560 7496 1206 163 80 73 chr1 10282825 10283125 -232381228 - AluJo SINE Alu -10 302 1 1963 111 28 7 chr1 10283201 10283490 -232380863 + AluSg SINE Alu 1 295 -15 1525 179 26 23 chr1 10283500 10283639 -232380714 + AluSx SINE Alu 1 138 -174 2099 111 3 3 chr1 10283639 10283936 -232380417 + AluSq SINE Alu 3 299 -14 1525 179 26 23 chr1 10283936 10284104 -232380249 + AluSx SINE Alu 138 309 -3 905 78 0 8 chr1 10284196 10284324 -232380029 - FLAM_C SINE Alu -16 127 1 506 81 0 40 chr1 10284326 10284400 -232379953 - Alu SINE Alu -19 292 222 968 118 51 0 chr1 10284400 10284577 -232379776 - LTR10A LTR ERV1 0 609 376 2536 62 0 0 chr1 10284579 10284887 -232379466 - AluY SINE Alu -3 308 1 180 0 0 0 chr1 10284896 10284916 -232379437 + (T)n Simple_repeat Simple_repeat 1 20 0 1703 108 13 0 chr1 10284916 10285148 -232379205 - AluSg SINE Alu -75 235 1 2277 91 3 3 chr1 10285201 10285510 -232378843 - AluSx SINE Alu -3 309 1 2107 102 3 13 chr1 10285510 10285814 -232378539 - AluSx SINE Alu -11 301 1 522 90 0 108 chr1 10285814 10285887 -232378466 - Harlequin LTR ERV1 -5187 1709 1650 2437 44 0 7 chr1 10285887 10286185 -232378168 + AluY SINE Alu 1 296 -15 522 90 0 108 chr1 10286185 10286222 -232378131 - Harlequin LTR ERV1 -5246 1650 1611 291 146 0 0 chr1 10286222 10286277 -232378076 + (TA)n Simple_repeat Simple_repeat 2 56 0 2285 49 3 14 chr1 10286288 10286576 -232377777 + AluY SINE Alu 1 285 -26 448 132 44 0 chr1 10287326 10287417 -232376936 - FRAM SINE Alu -52 124 30 2327 80 3 0 chr1 10290335 10290635 -232373718 + AluSx SINE Alu 1 301 -11 1797 98 132 0 chr1 10291527 10291793 -232372560 + AluY SINE Alu 1 301 0 266 136 0 0 chr1 10292510 10292554 -232371799 + Alu SINE Alu 1 44 -259 2017 115 0 55 chr1 10292554 10292884 -232371469 + AluSx SINE Alu 1 312 0 1165 96 12 0 chr1 10292885 10293051 -232371302 + AluSq SINE Alu 137 304 -9 2053 110 10 3 chr1 10294276 10294576 -232369777 + AluSg SINE Alu 1 302 -8 434 174 0 0 chr1 10294998 10295067 -232369286 + FLAM_A SINE Alu 8 76 -56 2299 84 7 0 chr1 10295239 10295548 -232368805 + AluY SINE Alu 1 311 0 1203 151 39 131 chr1 10295556 10295692 -232368661 + AluYb8 SINE Alu 1 148 -170 2283 87 3 3 chr1 10295692 10295991 -232368362 + AluY SINE Alu 1 299 -12 1203 151 39 131 chr1 10295991 10296191 -232368162 + AluYb8 SINE Alu 148 306 -12 2137 110 7 0 chr1 10298738 10299039 -232365314 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr1 10299317 10299346 -232365007 + AT_rich Low_complexity Low_complexity 1 29 0 681 130 10 0 chr1 10299393 10299493 -232364860 + AluY SINE Alu 44 144 -167 2243 70 0 54 chr1 10299493 10299808 -232364545 + AluY SINE Alu 1 298 -13 1461 198 21 3 chr1 10301715 10302003 -232362350 + AluJo SINE Alu 1 293 -19 1930 89 0 124 chr1 10302013 10302150 -232362203 + AluSq SINE Alu 1 73 -230 1569 88 0 5 chr1 10302150 10302355 -232361998 + AluY SINE Alu 1 204 -107 1930 89 0 124 chr1 10302355 10302555 -232361798 + AluSq SINE Alu 73 296 -7 2156 106 0 0 chr1 10303130 10303443 -232360910 + AluSx SINE Alu 1 313 0 1886 142 0 14 chr1 10303511 10303806 -232360547 + AluSx SINE Alu 1 291 -21 2011 103 34 0 chr1 10303928 10304220 -232360133 + AluSx SINE Alu 1 302 -10 690 238 18 24 chr1 10304220 10304388 -232359965 + AluJb SINE Alu 137 303 -9 352 272 24 16 chr1 10305339 10305464 -232358889 + L1MB8 LINE L1 6041 6166 -12 1522 176 19 4 chr1 10305593 10305726 -232358627 - AluSq SINE Alu -47 266 137 1917 128 17 3 chr1 10305726 10306023 -232358330 - AluSp SINE Alu -11 302 2 1522 176 19 4 chr1 10306023 10306151 -232358202 - AluSq SINE Alu -176 137 1 945 201 183 0 chr1 10306197 10306426 -232357927 - AluJo SINE Alu -24 288 18 647 221 8 0 chr1 10306705 10306836 -232357517 + FLAM_C SINE Alu 2 133 0 216 292 104 42 chr1 10306868 10306964 -232357389 - MIR SINE MIR -5 257 156 2237 98 3 0 chr1 10307084 10307381 -232356972 - AluSg SINE Alu -12 298 1 2071 120 0 23 chr1 10309251 10309559 -232354794 + AluSg1 SINE Alu 1 301 -8 1952 104 0 38 chr1 10309570 10309859 -232354494 + AluSx SINE Alu 1 278 -34 195 42 0 0 chr1 10310386 10310410 -232353943 + (CACG)n Simple_repeat Simple_repeat 4 27 0 1925 50 0 114 chr1 10311058 10311357 -232352996 + AluY SINE Alu 1 265 -46 1283 156 4 39 chr1 10311977 10312208 -232352145 + AluSx SINE Alu 3 225 -87 205 175 0 0 chr1 10312399 10312439 -232351914 + (CCCCAA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr1 10313445 10313467 -232350886 + GC_rich Low_complexity Low_complexity 1 22 0 233 271 160 7 chr1 10314081 10314225 -232350128 + L2 LINE L2 2286 2451 -863 312 280 69 42 chr1 10316071 10316253 -232348100 + MIR SINE MIR 15 202 -60 1427 202 40 64 chr1 10317088 10317544 -232346809 - L1 LINE L1 -2192 3954 3510 292 169 31 15 chr1 10317545 10317610 -232346743 - L1MD3 LINE L1 -10 7985 7920 252 203 47 31 chr1 10317672 10317736 -232346617 - L1MC3 LINE L1 -225 7560 7496 750 170 7 30 chr1 10520166 10520301 -232144052 - THE1C LTR MaLR -243 132 1 462 231 112 35 chr1 10520301 10520466 -232143887 - MLT1I LTR MaLR -227 182 5 903 334 18 21 chr1 10521397 10521780 -232142573 - MLT1I LTR MaLR -1 408 27 521 261 30 18 chr1 10522573 10522738 -232141615 + L1M4c LINE L1 1223 1389 -4995 381 261 85 33 chr1 10522751 10522904 -232141449 + L1M4 LINE L1 1357 1517 -5025 2048 282 59 46 chr1 10522905 10524193 -232140160 + L2 LINE L2 1994 3312 -1 2270 109 0 0 chr1 10525516 10525810 -232138543 + AluY SINE Alu 1 294 -17 189 0 0 0 chr1 10525842 10525863 -232138490 + (A)n Simple_repeat Simple_repeat 1 21 0 207 0 0 0 chr1 10526003 10526026 -232138327 + (A)n Simple_repeat Simple_repeat 1 23 0 858 337 14 7 chr1 10526221 10526518 -232137835 - MLT1K LTR MaLR -5 583 285 393 297 27 49 chr1 10526524 10526709 -232137644 - MLT1K LTR MaLR -406 182 2 297 377 0 0 chr1 10528011 10528157 -232136196 + L1MC4a LINE L1 5754 5899 -1909 478 241 166 0 chr1 10528239 10528384 -232135969 + MLT1J LTR MaLR 53 221 -290 180 244 22 0 chr1 10528487 10528532 -232135821 - MIR SINE MIR -107 155 110 395 304 152 17 chr1 10528587 10528883 -232135470 - LTR16C LTR ERVL -16 475 140 403 248 4 54 chr1 10529978 10530118 -232134235 + L1ME2 LINE L1 5687 5826 -336 1241 204 37 102 chr1 10530126 10530357 -232133996 - MLT1A2 LTR MaLR -8 366 168 2130 117 0 7 chr1 10530357 10530656 -232133697 - AluSx SINE Alu -15 297 1 1241 204 37 102 chr1 10530656 10530807 -232133546 - MLT1A2 LTR MaLR -206 168 9 1176 239 32 13 chr1 10530822 10531131 -232133222 + L1ME2 LINE L1 5841 6155 -9 216 174 0 43 chr1 10531220 10531276 -232133077 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 2924 72 5 10 chr1 10531286 10531677 -232132676 + L1PA8 LINE L1 5782 6170 -2 2186 186 46 72 chr1 10532214 10532783 -232131570 - MLT2B3 LTR ERVL 0 554 1 215 357 135 0 chr1 10532851 10533036 -232131317 + MIR SINE MIR 37 246 -16 271 293 0 0 chr1 10533808 10533883 -232130470 - L2 LINE L2 -5 3308 3234 712 199 114 5 chr1 10534256 10534457 -232129896 - L2 LINE L2 -337 2977 2755 245 312 29 0 chr1 10534469 10534559 -232129794 + MIR SINE MIR 60 135 -73 189 171 0 0 chr1 10534565 10534600 -232129753 + (ATG)n Simple_repeat Simple_repeat 3 37 0 2395 103 50 8 chr1 10535445 10535804 -232128549 + THE1C LTR MaLR 2 375 0 280 280 9 28 chr1 10536706 10536813 -232127540 + (TA)n Simple_repeat Simple_repeat 2 106 0 189 0 0 0 chr1 10536814 10536835 -232127518 + (TG)n Simple_repeat Simple_repeat 2 22 0 571 311 11 6 chr1 10536926 10537106 -232127247 - MIR SINE MIR -21 241 61 269 302 23 0 chr1 10537339 10537425 -232126928 + L2 LINE L2 3183 3270 -2 421 291 127 12 chr1 10537827 10538071 -232126282 - L2 LINE L2 0 3313 3042 2447 115 8 21 chr1 10538176 10538558 -232125795 - L1PA12 LINE L1 -242 5926 5550 503 235 35 0 chr1 10538567 10538682 -232125671 + L2 LINE L2 3176 3294 -19 2234 88 0 24 chr1 10538976 10539291 -232125062 + AluSq SINE Alu 4 313 0 929 227 100 0 chr1 10540323 10540583 -232123770 + MER33 DNA MER1_type 9 294 -30 495 319 11 21 chr1 10540590 10540781 -232123572 - L2 LINE L2 -46 3267 3079 2248 113 3 0 chr1 10541179 10541481 -232122872 - AluSx SINE Alu -9 303 1 545 224 32 0 chr1 10541523 10541648 -232122705 - MER5A DNA MER1_type 0 189 61 990 229 76 8 chr1 10541659 10541921 -232122432 - MER33 DNA MER1_type -36 288 9 274 196 0 0 chr1 10542023 10542074 -232122279 - MER5A DNA MER1_type -138 51 1 358 296 58 17 chr1 10542079 10542251 -232122102 + HAL1 LINE L1 2282 2460 -47 22 70 0 0 chr1 10543402 10543445 -232120908 + AT_rich Low_complexity Low_complexity 1 43 0 620 217 112 7 chr1 10543485 10543637 -232120716 - MER58C DNA MER1_type -2 213 46 231 291 145 47 chr1 10543657 10543891 -232120462 - L1ME LINE L1 -335 5835 5579 319 301 26 18 chr1 10544149 10544262 -232120091 + MIR SINE MIR 22 135 -127 4032 68 2 2 chr1 10544363 10544876 -232119477 - L1PA10 LINE L1 0 6168 5656 785 251 84 42 chr1 10544977 10545500 -232118853 - L2 LINE L2 -2 3311 2748 2352 107 3 3 chr1 10545575 10545883 -232118470 + AluSx SINE Alu 3 310 -2 206 300 100 18 chr1 10545890 10546000 -232118353 - L2 LINE L2 -481 2833 2715 295 248 40 10 chr1 10546046 10546147 -232118206 - L2 LINE L2 -495 2819 2716 189 0 0 0 chr1 10546170 10546191 -232118162 + (CTGGGG)n Simple_repeat Simple_repeat 1 21 0 355 226 124 1 chr1 10546215 10546319 -232118034 - MLT1F LTR MaLR -250 292 189 260 199 20 27 chr1 10546320 10546466 -232117887 + (CAGAGA)n Simple_repeat Simple_repeat 4 148 0 2335 141 23 62 chr1 10546479 10546692 -232117661 + MSTB LTR MaLR 1 190 -236 2368 116 0 0 chr1 10546692 10546995 -232117358 - AluSx SINE Alu -9 303 1 2335 141 23 62 chr1 10546995 10547220 -232117133 + MSTB LTR MaLR 190 422 -4 3021 181 60 6 chr1 10547323 10548128 -232116225 - L1MB5 LINE L1 -222 5952 5112 186 238 155 48 chr1 10548245 10548329 -232116024 + MIR SINE MIR 170 262 0 2296 107 7 0 chr1 10548763 10549061 -232115292 + AluSx SINE Alu 1 300 -12 569 266 94 112 chr1 10549142 10549340 -232115013 + MLT1L LTR MaLR 46 246 -369 2034 138 0 35 chr1 10549340 10549651 -232114702 + AluSx SINE Alu 1 300 -12 569 266 94 112 chr1 10549651 10550024 -232114329 + MLT1L LTR MaLR 246 607 -8 354 259 26 26 chr1 10550036 10550152 -232114201 - 7SK RNA RNA -70 123 8 207 125 0 0 chr1 10550228 10550268 -232114085 + (GA)n Simple_repeat Simple_repeat 2 41 0 1472 195 29 102 chr1 10550535 10550955 -232113398 - MLT2D LTR ERVL -1 413 25 2839 47 0 6 chr1 10550955 10551299 -232113054 + L1PA8 LINE L1 5823 6164 -8 1275 113 0 0 chr1 10551500 10551660 -232112693 - AluSg SINE Alu -150 160 1 718 173 154 0 chr1 10551678 10551840 -232112513 + MER53 DNA DNA 3 189 0 459 256 31 31 chr1 10552376 10552536 -232111817 + MLT1I LTR MaLR 5 164 -245 467 256 141 0 chr1 10552575 10552731 -232111622 + MLT1I LTR MaLR 232 409 0 1683 206 11 11 chr1 10552735 10553099 -232111254 + MLT1A1 LTR MaLR 2 365 0 233 218 23 69 chr1 10553426 10553513 -232110840 + L2 LINE L2 2697 2779 -535 1210 190 5 0 chr1 10553771 10553982 -232110371 - MLT1F LTR MaLR -1 541 330 443 201 45 16 chr1 10554082 10554213 -232110140 - MLT1F LTR MaLR -376 191 5 3152 250 134 19 chr1 10556929 10557373 -232106980 + L1M4 LINE L1 3750 4141 -2005 2479 58 14 0 chr1 10557373 10557666 -232106687 - AluY SINE Alu -14 297 1 3152 250 134 19 chr1 10557666 10558552 -232105801 + L1M4 LINE L1 4141 5234 -912 477 180 40 0 chr1 10558694 10558794 -232105559 - L1 LINE L1 -3677 3888 3785 520 196 29 0 chr1 10558827 10558929 -232105424 + L1M1 LINE L1 1301 1405 -6160 16293 161 32 4 chr1 10558936 10561611 -232102742 - L1 LINE L1 -4802 2763 13 286 288 0 0 chr1 10561801 10561881 -232102472 + L2 LINE L2 3233 3312 -1 962 205 68 0 chr1 10561957 10562162 -232102191 + MER20 DNA MER1_type 1 219 0 214 280 0 0 chr1 10563196 10563246 -232101107 - MIR SINE MIR -144 118 69 1908 174 41 33 chr1 10563292 10563683 -232100670 - MSTD LTR MaLR -2 394 1 341 188 229 0 chr1 10564687 10564783 -232099570 + MER91C DNA MER1_type 23 140 0 277 336 66 16 chr1 10564841 10564963 -232099390 + MIR SINE MIR 9 136 -126 360 269 39 0 chr1 10565066 10565170 -232099183 - MIR SINE MIR -70 192 85 665 305 58 38 chr1 10565176 10565612 -232098741 - MLT1K LTR MaLR -6 582 69 193 182 0 0 chr1 10565672 10565705 -232098648 + MIR SINE MIR 218 250 -12 207 250 21 0 chr1 10566047 10566095 -232098258 - MIR SINE MIR -130 78 30 266 206 79 16 chr1 10567183 10567246 -232097107 + MER103 DNA DNA 51 117 -49 340 255 29 0 chr1 10567546 10567648 -232096705 - MER103 DNA DNA -47 119 15 4235 140 19 107 chr1 10568203 10569761 -232094592 + pTR5 LTR ERV1 743 2605 -1 380 307 111 16 chr1 10569944 10570133 -232094220 + MIR SINE MIR 20 226 -36 1746 124 3 42 chr1 10570633 10570940 -232093413 - AluSx SINE Alu -15 297 3 2190 85 7 7 chr1 10570979 10571261 -232093092 - AluY SINE Alu -29 282 1 1850 178 104 31 chr1 10573212 10573627 -232090726 + MLT2B1 LTR ERVL 8 452 -68 267 103 0 0 chr1 10573627 10573666 -232090687 + (TA)n Simple_repeat Simple_repeat 2 40 0 560 303 139 29 chr1 10573791 10574101 -232090252 + L2 LINE L2 2970 3313 0 651 254 34 54 chr1 10574262 10574467 -232089886 + MER20 DNA MER1_type 17 217 -2 285 217 12 36 chr1 10575597 10575680 -232088673 + MER5A DNA MER1_type 1 81 -108 1198 186 32 14 chr1 10575785 10576006 -232088347 + AluJb SINE Alu 76 300 -12 1721 204 78 109 chr1 10579117 10579451 -232084902 + LTR1B LTR ERV1 52 395 -431 2219 99 3 3 chr1 10579451 10579745 -232084608 - AluSg SINE Alu -16 294 1 1721 204 78 109 chr1 10579745 10580127 -232084226 + LTR1B LTR ERV1 395 746 -80 1244 182 29 0 chr1 10580929 10581138 -232083215 + MER20 DNA MER1_type 5 219 0 988 181 6 0 chr1 10581140 10581306 -232083047 + MLT1C LTR MaLR 2 168 -299 770 159 0 8 chr1 10581341 10581467 -232082886 + AluY SINE Alu 2 126 -185 289 317 49 32 chr1 10581590 10581836 -232082517 + L1ME4a LINE L1 4410 4659 -1487 1387 101 0 0 chr1 10582045 10582263 -232082090 + AluSc SINE Alu 105 322 0 627 292 90 17 chr1 10582564 10582852 -232081501 + L1ME4a LINE L1 5393 5701 -420 1978 137 0 14 chr1 10582960 10583285 -232081068 - AluSx SINE Alu 0 321 1 21 0 0 0 chr1 10583363 10583384 -232080969 + AT_rich Low_complexity Low_complexity 1 21 0 339 289 93 25 chr1 10583393 10583597 -232080756 + L1ME4a LINE L1 5899 6116 -5 208 311 78 39 chr1 10583742 10583845 -232080508 - L2 LINE L2 -13 3259 3153 591 342 18 9 chr1 10584100 10584322 -232080031 - MIR SINE MIR -17 245 22 278 265 29 15 chr1 10584637 10584705 -232079648 - L2 LINE L2 -2 3270 3202 292 273 239 30 chr1 10584729 10585059 -232079294 + L2 LINE L2 2246 2644 -670 1246 125 22 54 chr1 10586205 10586429 -232077924 + THE1C LTR MaLR 159 375 0 361 239 11 23 chr1 10586580 10586668 -232077685 + MLT1I LTR MaLR 318 404 -5 209 32 0 32 chr1 10586965 10586996 -232077357 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 703 209 0 0 chr1 10586998 10587108 -232077245 - FLAM_A SINE Alu -19 114 5 253 250 106 29 chr1 10588322 10588426 -232075927 - MIR3 SINE MIR -8 200 89 26 50 0 0 chr1 10588890 10588930 -232075423 + AT_rich Low_complexity Low_complexity 1 40 0 4723 265 75 27 chr1 10589393 10590191 -232074162 + L1ME1 LINE L1 34 792 -5423 495 0 0 0 chr1 10590191 10590246 -232074107 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4723 265 75 27 chr1 10590246 10591368 -232072985 + L1ME1 LINE L1 792 1859 -4356 1131 156 80 25 chr1 10591368 10591567 -232072786 - MER6B DNA MER2_type 0 210 1 4723 265 75 27 chr1 10591567 10592986 -232071367 + L1ME1 LINE L1 1859 3512 -2703 2372 227 51 26 chr1 10592989 10593675 -232070678 + L1ME1 LINE L1 5337 6039 -196 1577 80 5 0 chr1 10593780 10593993 -232070360 - L1P LINE L1 -5932 214 1 7162 122 15 13 chr1 10593994 10595665 -232068688 + L1MA3 LINE L1 4628 6305 0 960 294 32 38 chr1 10595831 10596274 -232068079 - L2 LINE L2 -19 3294 2855 771 229 66 5 chr1 10596274 10596599 -232067754 - MSTD LTR MaLR 0 396 1 536 286 95 17 chr1 10596607 10596848 -232067505 - L2 LINE L2 -508 2806 2547 643 249 306 10 chr1 10596850 10597248 -232067105 + L2 LINE L2 2029 2544 -770 893 176 60 11 chr1 10598210 10598392 -232065961 - MER20 DNA MER1_type 0 219 29 757 157 0 0 chr1 10599378 10599480 -232064873 - FLAM_C SINE Alu -33 110 9 27 0 0 0 chr1 10599512 10599539 -232064814 + AT_rich Low_complexity Low_complexity 1 27 0 2151 132 0 0 chr1 10599546 10599841 -232064512 - AluSx SINE Alu -17 295 1 625 243 105 43 chr1 10600437 10600713 -232063640 - LTR16C LTR ERVL -14 477 185 237 321 57 29 chr1 10600897 10601037 -232063316 + L2 LINE L2 2491 2634 -680 25 31 0 0 chr1 10601050 10601082 -232063271 + AT_rich Low_complexity Low_complexity 1 32 0 2085 136 0 3 chr1 10601258 10601553 -232062800 - AluSx SINE Alu -18 294 1 249 33 0 0 chr1 10601652 10601682 -232062671 + (CA)n Simple_repeat Simple_repeat 2 31 0 703 296 30 4 chr1 10602546 10602779 -232061574 + MLT1K LTR MaLR 338 576 -12 396 242 74 0 chr1 10602862 10602957 -232061396 + MIR3 SINE MIR 96 197 -11 398 274 17 8 chr1 10603550 10603667 -232060686 + MIR SINE MIR 28 145 -117 400 329 35 6 chr1 10603930 10604100 -232060253 + MIR SINE MIR 49 223 -39 180 0 0 0 chr1 10604361 10604381 -232059972 + (TA)n Simple_repeat Simple_repeat 2 21 0 233 338 127 0 chr1 10604480 10604622 -232059731 - L2 LINE L2 -1 3271 3112 820 159 33 60 chr1 10604858 10605040 -232059313 + MER45A DNA AcHobo 1 177 -1 285 340 74 37 chr1 10605053 10605215 -232059138 - L2 LINE L2 -2 3270 3103 1221 287 122 45 chr1 10605452 10605915 -232058438 - L2 LINE L2 -20 3293 2867 1142 200 5 5 chr1 10605915 10606120 -232058233 - MER3 DNA MER1_type 0 209 5 1221 287 122 45 chr1 10606120 10606567 -232057786 - L2 LINE L2 -446 2867 2311 736 255 69 39 chr1 10606698 10606902 -232057451 - MIR SINE MIR -50 212 3 487 289 101 23 chr1 10607125 10607343 -232057010 - MIR SINE MIR -12 250 16 685 292 73 9 chr1 10608379 10608612 -232055741 - MIR SINE MIR 0 262 15 208 149 81 0 chr1 10608763 10608837 -232055516 + (TA)n Simple_repeat Simple_repeat 2 81 0 30 0 0 0 chr1 10608913 10608943 -232055410 + AT_rich Low_complexity Low_complexity 1 30 0 428 125 68 11 chr1 10608948 10609215 -232055138 + (TA)n Simple_repeat Simple_repeat 1 282 0 214 307 237 0 chr1 10609320 10609434 -232054919 + L2 LINE L2 3121 3261 -11 248 292 170 61 chr1 10609945 10610287 -232054066 - L2 LINE L2 -27 3245 2867 993 303 44 26 chr1 10610533 10610922 -232053431 + LTR16C LTR ERVL 96 491 0 248 284 0 25 chr1 10611307 10611388 -232052965 + (TCCA)n Simple_repeat Simple_repeat 1 79 0 644 118 0 8 chr1 10611395 10611514 -232052839 + (TTCC)n Simple_repeat Simple_repeat 2 119 0 312 120 0 0 chr1 10611516 10611566 -232052787 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 438 69 0 0 chr1 10612258 10612316 -232052037 + (GA)n Simple_repeat Simple_repeat 1 58 0 962 113 69 25 chr1 10612334 10612493 -232051860 - THE1B LTR MaLR 0 364 199 279 265 52 52 chr1 10612736 10612872 -232051481 - L2 LINE L2 -19 3294 3159 2626 183 22 8 chr1 10612889 10613391 -232050962 + L1MB7 LINE L1 5674 6182 -2 239 333 21 50 chr1 10613512 10613653 -232050700 - L2 LINE L2 -331 2941 2805 314 287 11 0 chr1 10614392 10614479 -232049874 - MIR3 SINE MIR -53 155 68 890 183 57 104 chr1 10614706 10614985 -232049368 + L1ME3A LINE L1 5881 6146 -24 1052 228 114 30 chr1 10614985 10615435 -232048918 - MLT1E LTR MaLR 0 593 54 328 349 28 60 chr1 10615480 10615729 -232048624 + MIR SINE MIR 22 262 0 363 261 120 0 chr1 10615793 10615885 -232048468 - MIR SINE MIR -131 131 29 603 306 0 0 chr1 10617047 10617217 -232047136 - MER117 DNA MER1_type -27 170 1 264 59 0 0 chr1 10617411 10617445 -232046908 + (CA)n Simple_repeat Simple_repeat 2 35 0 189 36 0 0 chr1 10617810 10617838 -232046515 - L2 LINE L2 0 3313 3286 727 218 39 22 chr1 10617849 10618028 -232046325 + HERVL74 LTR ERVL 1389 1570 -4115 346 276 77 82 chr1 10618164 10618575 -232045778 + L1ME3A LINE L1 4064 4449 -1697 2199 105 3 16 chr1 10618575 10618881 -232045472 + AluY SINE Alu 3 304 -7 346 276 77 82 chr1 10618881 10619138 -232045215 + L1ME3A LINE L1 4449 4706 -1440 446 317 125 34 chr1 10619289 10619591 -232044762 + L1ME3A LINE L1 5266 5539 -631 2280 118 0 0 chr1 10619591 10619896 -232044457 - AluSx SINE Alu -7 305 1 446 317 125 34 chr1 10619896 10620146 -232044207 + L1ME3A LINE L1 5539 5884 -286 272 328 45 52 chr1 10620274 10620408 -232043945 - L2 LINE L2 -8 3305 3173 479 188 0 21 chr1 10620457 10620553 -232043800 + MLT1F1 LTR MaLR 474 567 0 275 114 0 0 chr1 10621237 10621281 -232043072 + MLT1F1 LTR MaLR 10 53 -489 1215 164 263 54 chr1 10621557 10621911 -232042442 + MLT1F1 LTR MaLR 140 567 0 2312 105 0 0 chr1 10622843 10623138 -232041215 - AluSx SINE Alu -15 297 3 2353 71 0 0 chr1 10623439 10623744 -232040609 + AluY SINE Alu 1 305 0 344 221 0 0 chr1 10623785 10623853 -232040500 + Charlie8 DNA MER1_type 2348 2415 -2 2005 132 0 0 chr1 10624454 10624760 -232039593 + AluSx SINE Alu 1 306 0 1058 204 104 36 chr1 10624782 10625032 -232039321 + MLT2B1 LTR ERVL 163 429 -91 354 98 0 0 chr1 10625062 10625113 -232039240 + (TC)n Simple_repeat Simple_repeat 2 52 0 293 29 0 0 chr1 10625157 10625191 -232039162 + MLT2C1 LTR ERVL 364 397 0 1440 166 4 0 chr1 10625474 10625709 -232038644 - MSTB LTR MaLR 0 426 191 2305 99 0 13 chr1 10625811 10626115 -232038238 - AluSq SINE Alu -12 301 2 362 250 143 7 chr1 10626116 10626153 -232038200 - MLT1H LTR MaLR -379 170 139 1148 229 84 38 chr1 10626153 10626498 -232037855 + MLT1A1 LTR MaLR 5 365 0 362 250 143 7 chr1 10626498 10626600 -232037753 - MLT1H LTR MaLR -410 139 12 2163 95 0 7 chr1 10627504 10627798 -232036555 - AluSg SINE Alu -14 296 5 450 267 130 31 chr1 10627960 10628252 -232036101 + LTR33 LTR ERVL 50 370 -151 1959 98 32 18 chr1 10629076 10629376 -232034977 - AluSc SINE Alu 0 304 1 756 224 27 58 chr1 10629974 10630197 -232034156 - MER20 DNA MER1_type -3 216 1 204 266 185 46 chr1 10630248 10630421 -232033932 - MIR SINE MIR -36 226 30 2232 84 10 3 chr1 10630505 10630803 -232033550 - AluY SINE Alu -11 300 1 302 250 15 0 chr1 10630994 10631062 -232033291 - Charlie8 DNA MER1_type -989 1428 1360 333 244 144 61 chr1 10631117 10631297 -232033056 - Charlie8 DNA MER1_type -2152 265 71 255 299 45 52 chr1 10631557 10631691 -232032662 + L2 LINE L2 3139 3271 -1 248 311 56 31 chr1 10631696 10631857 -232032496 - L3b LINE CR1 -208 1375 1211 2024 159 0 3 chr1 10632306 10632608 -232031745 + AluSx SINE Alu 1 301 -11 1022 173 6 11 chr1 10632608 10632787 -232031566 + AluSc SINE Alu 132 309 0 335 240 83 0 chr1 10632795 10632891 -232031462 - L1ME4a LINE L1 -16 6105 6002 271 197 49 16 chr1 10633053 10633114 -232031239 - LTR67 LTR ERVL -5 552 490 1409 161 88 102 chr1 10633617 10633653 -232030700 - MER66A LTR ERV1 -28 450 415 2875 92 3 14 chr1 10633653 10634021 -232030332 - THE1B LTR MaLR 0 364 1 1409 161 88 102 chr1 10634021 10634425 -232029928 - MER66A LTR ERV1 -63 415 97 300 233 39 39 chr1 10634550 10634653 -232029700 + MIR SINE MIR 160 262 0 233 372 47 31 chr1 10635171 10635300 -232029053 + MIR3 SINE MIR 30 160 -48 728 276 127 48 chr1 10635300 10635615 -232028738 + MER102b DNA MER1_type 1 340 -1 2146 131 20 7 chr1 10635626 10635932 -232028421 - AluSx SINE Alu -2 310 1 307 221 11 74 chr1 10636006 10636101 -232028252 - MLT1H1 LTR MaLR -13 542 454 291 185 54 0 chr1 10636210 10636302 -232028051 + (TA)n Simple_repeat Simple_repeat 2 98 0 283 288 113 48 chr1 10636303 10636933 -232027420 - L1 LINE L1 -1305 4841 4160 2055 120 0 17 chr1 10637654 10637946 -232026407 + AluSx SINE Alu 5 291 -21 319 179 0 0 chr1 10637949 10638005 -232026348 - HAL1 LINE L1 -852 1655 1600 * 1409 286 78 46 chr1 10637986 10638235 -232026118 - L1MEd LINE L1 -4655 1474 1234 1839 218 23 45 chr1 10638235 10638749 -232025604 - MLT1D LTR MaLR 0 505 3 1409 286 78 46 chr1 10638749 10638847 -232025506 - L1MEd LINE L1 -4895 1234 1141 1700 179 10 7 chr1 10638847 10639144 -232025209 + AluSx SINE Alu 1 298 -14 1409 286 78 46 chr1 10639144 10639915 -232024438 - L1MEd LINE L1 -4988 1141 328 373 290 40 0 chr1 10640004 10640128 -232024225 - L1MEd LINE L1 -5947 172 44 295 229 149 70 chr1 10640312 10640513 -232023840 + L2 LINE L2 3012 3228 -85 1188 205 111 46 chr1 10640514 10640865 -232023488 + MLT1A2 LTR MaLR 1 374 0 334 272 50 50 chr1 10641594 10641764 -232022589 - MIR SINE MIR -63 145 5 534 261 101 0 chr1 10641943 10642142 -232022211 + L1ME LINE L1 5551 5769 -393 456 289 21 14 chr1 10642304 10642446 -232021907 - MIR SINE MIR -11 251 109 1014 246 52 77 chr1 10642452 10642583 -232021770 + MLT2C2 LTR ERVL 1 134 -330 3047 86 0 10 chr1 10642583 10642990 -232021363 - L1PB1 LINE L1 0 6151 5749 1014 246 52 77 chr1 10642990 10643040 -232021313 + MLT2C2 LTR ERVL 134 184 -280 1777 112 7 19 chr1 10643040 10643309 -232021044 - L1MA1 LINE L1 -8 6294 6029 1014 246 52 77 chr1 10643309 10643636 -232020717 + MLT2C2 LTR ERVL 184 424 -40 441 0 0 0 chr1 10643636 10643685 -232020668 + (CA)n Simple_repeat Simple_repeat 2 50 0 1014 246 52 77 chr1 10643685 10643724 -232020629 + MLT2C2 LTR ERVL 424 462 -2 226 128 21 21 chr1 10643727 10643774 -232020579 - MIR SINE MIR -156 106 60 902 253 116 76 chr1 10644561 10644821 -232019532 - L1ME3 LINE L1 -329 5833 5585 2162 200 34 122 chr1 10644821 10645492 -232018861 + LTR9 LTR ERV1 1 612 0 902 253 116 76 chr1 10645492 10646165 -232018188 - L1ME3 LINE L1 -577 5585 4827 2071 140 7 0 chr1 10646165 10646458 -232017895 + AluSx SINE Alu 1 295 -17 902 253 116 76 chr1 10646458 10646733 -232017620 - L1ME3 LINE L1 -1335 4827 4565 300 283 114 61 chr1 10647169 10647547 -232016806 - L1ME3 LINE L1 -1908 4238 3841 1078 113 0 0 chr1 10647591 10647732 -232016621 - AluJb SINE Alu -171 141 1 305 261 85 21 chr1 10647732 10647885 -232016468 - L1ME3 LINE L1 -2291 3855 3695 237 221 86 4 chr1 10648714 10648801 -232015552 + MIR SINE MIR 5 97 -111 205 298 18 0 chr1 10648868 10648925 -232015428 + MIR3 SINE MIR 148 205 -3 316 284 230 37 chr1 10649283 10649579 -232014774 - L2 LINE L2 -5 3267 2915 1598 147 143 0 chr1 10649949 10650071 -232014282 + AluJb SINE Alu 1 104 -198 206 0 69 0 chr1 10650071 10650100 -232014253 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1598 147 143 0 chr1 10650100 10650235 -232014118 + AluJb SINE Alu 104 295 -7 435 114 13 38 chr1 10700327 10700406 -231963947 - L1P4 LINE L1 -542 5626 5550 503 235 35 0 chr1 10700415 10700530 -231963823 + L2 LINE L2 3176 3294 -19 2234 88 0 24 chr1 10700824 10701139 -231963214 + AluSq SINE Alu 4 313 0 929 227 100 0 chr1 10702171 10702431 -231961922 + MER33 DNA MER1_type 9 294 -30 585 278 26 26 chr1 10702438 10702665 -231961688 - L2 LINE L2 -46 3267 3041 276 143 0 0 chr1 10702929 10702971 -231961382 + AluSg/x SINE Alu 207 248 -52 1140 196 4 13 chr1 10702971 10703201 -231961152 + AluJb SINE Alu 85 312 0 328 240 83 0 chr1 10703209 10703305 -231961048 - L1ME4a LINE L1 -16 6105 6002 273 212 45 15 chr1 10703467 10703533 -231960820 - LTR67 LTR ERVL -5 552 485 221 273 246 0 chr1 10703759 10703869 -231960484 - MER91C DNA MER1_type -2 138 2 270 208 0 0 chr1 10703949 10704002 -231960351 - MLT1K LTR MaLR -531 57 5 382 190 13 0 chr1 10704164 10704243 -231960110 + L2 LINE L2 3222 3301 -12 229 261 45 11 chr1 10704244 10704332 -231960021 - L1ME4a LINE L1 -375 5746 5656 375 284 139 15 chr1 10705057 10705258 -231959095 - HAL1 LINE L1 0 2507 2282 274 196 0 0 chr1 10705263 10705314 -231959039 + MER5A DNA MER1_type 1 51 -138 990 229 76 8 chr1 10705416 10705678 -231958675 + MER33 DNA MER1_type 9 288 -36 545 224 32 0 chr1 10705689 10705814 -231958539 + MER5A DNA MER1_type 61 189 0 2193 111 7 0 chr1 10705856 10706153 -231958200 + AluSx SINE Alu 1 299 -13 307 276 10 10 chr1 10706294 10706392 -231957961 + L2 LINE L2 3174 3271 -42 554 297 82 0 chr1 10706591 10706957 -231957396 - L2 LINE L2 -253 3060 2653 1245 190 174 22 chr1 10707071 10707090 -231957263 - LTR37A LTR ERV1 -2 424 409 2572 70 0 16 chr1 10707090 10707403 -231956950 + AluSx SINE Alu 1 308 -4 1245 190 174 22 chr1 10707403 10707751 -231956602 - LTR37A LTR ERV1 -17 409 1 221 358 41 8 chr1 10707753 10707876 -231956477 - MIR SINE MIR -128 134 8 243 303 0 13 chr1 10708008 10708084 -231956269 - L2 LINE L2 -10 3262 3188 1626 187 27 97 chr1 10708460 10708904 -231955449 + MLT2D LTR ERVL 1 413 -1 207 125 0 0 chr1 10709171 10709211 -231955142 + (TC)n Simple_repeat Simple_repeat 2 41 0 354 259 26 26 chr1 10709287 10709403 -231954950 + 7SK RNA RNA 8 123 -70 594 264 94 112 chr1 10709415 10709788 -231954565 - MLT1L LTR MaLR -8 607 246 2034 138 0 35 chr1 10709788 10710099 -231954254 - AluSx SINE Alu -12 300 1 594 264 94 112 chr1 10710099 10710297 -231954056 - MLT1L LTR MaLR -369 246 46 2296 107 7 0 chr1 10710378 10710676 -231953677 - AluSx SINE Alu -12 300 1 186 238 155 48 chr1 10711109 10711193 -231953160 - MIR SINE MIR 0 262 170 3317 173 58 5 chr1 10711310 10712124 -231952229 + L1MB5 LINE L1 5112 5961 -213 564 262 62 41 chr1 10712124 10712368 -231951985 + L2 LINE L2 2410 2658 -656 198 0 0 0 chr1 10712508 10712530 -231951823 + (TC)n Simple_repeat Simple_repeat 2 23 0 2346 144 23 61 chr1 10712559 10712788 -231951565 - MSTB LTR MaLR 0 426 221 2368 116 0 0 chr1 10712788 10713091 -231951262 + AluSx SINE Alu 1 303 -9 2346 144 23 61 chr1 10713091 10713304 -231951049 - MSTB LTR MaLR -205 221 1 260 199 20 27 chr1 10713317 10713463 -231950890 + (TCTCTG)n Simple_repeat Simple_repeat 4 148 0 355 226 124 1 chr1 10713464 10713568 -231950785 + MLT1K LTR MaLR 189 292 -250 189 0 0 0 chr1 10713592 10713613 -231950740 + (CCCCAG)n Simple_repeat Simple_repeat 1 21 0 295 248 40 10 chr1 10713636 10713737 -231950616 + L2 LINE L2 2716 2819 -495 206 300 100 18 chr1 10713783 10713893 -231950460 + L2 LINE L2 2715 2833 -481 2352 107 3 3 chr1 10713900 10714208 -231950145 - AluSx SINE Alu -2 310 3 785 251 84 42 chr1 10714283 10714806 -231949547 + L2 LINE L2 2748 3311 -2 4032 68 2 2 chr1 10714907 10715420 -231948933 + L1PA10 LINE L1 5656 6168 0 319 301 26 18 chr1 10715521 10715634 -231948719 - MIR SINE MIR -127 135 22 231 291 145 47 chr1 10715892 10716126 -231948227 + L1ME LINE L1 5579 5835 -335 620 217 112 7 chr1 10716146 10716298 -231948055 + MER58C DNA MER1_type 46 213 -2 22 70 0 0 chr1 10716338 10716381 -231947972 + AT_rich Low_complexity Low_complexity 1 43 0 529 318 158 3 chr1 10716958 10717307 -231947046 - MLT1J LTR MaLR -56 455 53 297 377 0 0 chr1 10717389 10717535 -231946818 - L1MC4a LINE L1 -1909 5899 5754 393 297 27 49 chr1 10718837 10719022 -231945331 + MLT1K LTR MaLR 2 182 -406 858 337 14 7 chr1 10719028 10719325 -231945028 + MLT1K LTR MaLR 285 583 -5 207 0 0 0 chr1 10719520 10719543 -231944810 + (T)n Simple_repeat Simple_repeat 1 23 0 2284 105 0 0 chr1 10719576 10719870 -231944483 - AluY SINE Alu -17 294 1 2048 282 59 46 chr1 10721193 10722481 -231941872 - L2 LINE L2 -1 3312 1994 381 261 85 33 chr1 10722482 10722635 -231941718 - L1M4 LINE L1 -5025 1517 1357 521 261 30 18 chr1 10722648 10722813 -231941540 - L1M4c LINE L1 -4995 1389 1223 908 334 18 21 chr1 10723606 10723989 -231940364 + MLT1I LTR MaLR 27 408 -1 582 267 77 89 chr1 10724920 10725085 -231939268 + MLT1I LTR MaLR 5 171 -238 2196 143 26 37 chr1 10725085 10725464 -231938889 + THE1C LTR MaLR 1 375 0 582 267 77 89 chr1 10725464 10725703 -231938650 + MLT1I LTR MaLR 171 404 -5 209 32 0 32 chr1 10726000 10726031 -231938322 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 703 209 0 0 chr1 10726033 10726143 -231938210 - FLAM_A SINE Alu -19 114 5 253 250 106 29 chr1 10727357 10727461 -231936892 - MIR3 SINE MIR -8 200 89 26 50 0 0 chr1 10727925 10727965 -231936388 + AT_rich Low_complexity Low_complexity 1 40 0 4738 265 75 27 chr1 10728428 10729226 -231935127 + L1ME1 LINE L1 34 793 -5422 495 0 0 0 chr1 10729226 10729281 -231935072 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4738 265 75 27 chr1 10729281 10730404 -231933949 + L1ME1 LINE L1 793 1861 -4354 1131 156 80 25 chr1 10730404 10730603 -231933750 - MER6B DNA MER2_type 0 210 1 4738 265 75 27 chr1 10730603 10732022 -231932331 + L1ME1 LINE L1 1861 3512 -2703 2941 241 42 21 chr1 10732025 10732885 -231931468 + L1ME1 LINE L1 5337 6373 -30 279 265 52 52 chr1 10732986 10733122 -231931231 - L2 LINE L2 -19 3294 3159 2626 183 22 8 chr1 10733139 10733641 -231930712 + L1MB7 LINE L1 5674 6182 -2 239 333 21 50 chr1 10733762 10733903 -231930450 - L2 LINE L2 -331 2941 2805 314 287 11 0 chr1 10734642 10734729 -231929624 - MIR3 SINE MIR -53 155 68 858 209 40 79 chr1 10734956 10735233 -231929120 + L1ME3A LINE L1 5881 6146 -24 1052 228 114 30 chr1 10735233 10735683 -231928670 - MLT1E LTR MaLR 0 593 54 328 349 28 60 chr1 10735728 10735977 -231928376 + MIR SINE MIR 22 262 0 363 261 120 0 chr1 10736041 10736133 -231928220 - MIR SINE MIR -131 131 29 467 103 26 0 chr1 10736509 10736587 -231927766 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 514 301 61 25 chr1 10736915 10737111 -231927242 - MIR SINE MIR -54 208 6 694 265 158 56 chr1 10738178 10738421 -231925932 + L2 LINE L2 2447 2664 -650 1617 162 7 45 chr1 10738421 10738729 -231925624 + AluJb SINE Alu 1 296 -16 694 265 158 56 chr1 10738729 10738896 -231925457 + L2 LINE L2 2664 2899 -415 838 278 62 0 chr1 10739508 10739735 -231924618 - MIR SINE MIR -17 245 5 2603 225 82 39 chr1 10739747 10740537 -231923816 - L1MC4 LINE L1 0 8042 7219 532 281 89 37 chr1 10740653 10740899 -231923454 + MIR SINE MIR 3 261 -1 27 0 0 0 chr1 10743322 10743349 -231921004 + AT_rich Low_complexity Low_complexity 1 27 0 563 273 33 49 chr1 10744689 10744751 -231919602 - MER5A DNA MER1_type -9 180 118 1895 118 4 4 chr1 10744751 10745022 -231919331 + AluY SINE Alu 3 273 -38 563 273 33 49 chr1 10745022 10745142 -231919211 - MER5A DNA MER1_type -71 118 1 396 288 132 27 chr1 10746237 10746494 -231917859 - L2 LINE L2 -39 3274 2991 451 322 87 80 chr1 10747536 10747756 -231916597 + L2 LINE L2 2507 2724 -589 1528 154 0 17 chr1 10747756 10747996 -231916357 + AluJb SINE Alu 1 236 -76 451 322 87 80 chr1 10747996 10748357 -231915996 + L2 LINE L2 2724 3091 -222 318 216 148 0 chr1 10748428 10748516 -231915837 + MLT1I LTR MaLR 71 171 -238 204 40 0 0 chr1 10748762 10748787 -231915566 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 2016 125 0 0 chr1 10748799 10749071 -231915282 - AluSx SINE Alu -40 272 1 641 227 19 13 chr1 10749082 10749236 -231915117 + L2 LINE L2 3159 3313 0 1906 139 11 7 chr1 10750059 10750346 -231914007 - AluJb SINE Alu -24 288 1 291 213 172 16 chr1 10751103 10751225 -231913128 + MLT1L LTR MaLR 475 615 0 180 200 0 0 chr1 10751279 10751319 -231913034 + (CA)n Simple_repeat Simple_repeat 1 40 0 2013 116 28 7 chr1 10751382 10751666 -231912687 + AluSc SINE Alu 18 307 -2 311 287 70 26 chr1 10751845 10751960 -231912393 - MIR SINE MIR -130 132 13 714 276 89 0 chr1 10752145 10752348 -231912005 - MIR SINE MIR 0 262 42 329 335 6 0 chr1 10752591 10752770 -231911583 + (TG)n Simple_repeat Simple_repeat 1 180 0 525 274 55 0 chr1 10753164 10753310 -231911043 - MIR SINE MIR -78 184 31 475 271 133 0 chr1 10753828 10754009 -231910344 + MIR SINE MIR 36 240 -22 673 291 18 18 chr1 10754225 10754445 -231909908 + MIR SINE MIR 9 228 -34 204 214 0 0 chr1 10754985 10755041 -231909312 + GA-rich Low_complexity Low_complexity 2 57 0 346 295 179 0 chr1 10755214 10755404 -231908949 + MIR SINE MIR 33 256 -6 201 163 61 0 chr1 10756253 10756302 -231908051 + (CATA)n Simple_repeat Simple_repeat 2 53 0 360 211 14 0 chr1 10756304 10756375 -231907978 + MER6B DNA MER2_type 4 75 -201 1559 110 9 0 chr1 10756375 10756594 -231907759 - THE1C LTR MaLR 0 375 155 30627 115 11 10 chr1 10756606 10761040 -231903313 + L1P LINE L1 11 4452 -1694 249 304 0 0 chr1 10761061 10761130 -231903223 - MLT1J LTR MaLR -333 178 110 280 225 297 0 chr1 10761848 10761959 -231902394 - MIR SINE MIR 0 262 119 2055 171 17 0 chr1 10762009 10762355 -231901998 + MLT1B LTR MaLR 39 390 0 730 251 18 6 chr1 10762623 10762794 -231901559 - MER45A DNA AcHobo 0 178 6 461 288 104 22 chr1 10763144 10763366 -231900987 - MIR SINE MIR 0 262 23 509 326 73 23 chr1 10763686 10764098 -231900255 + L2 LINE L2 2600 3034 -238 4310 168 25 56 chr1 10764115 10765012 -231899341 - L1MB7 LINE L1 -7 6177 5309 433 172 194 0 chr1 10766467 10766560 -231897793 - MER81 DNA DNA -2 112 2 929 241 37 17 chr1 10767407 10767648 -231896705 + MIR SINE MIR 17 262 0 2362 157 34 42 chr1 10767681 10768023 -231896330 - MLT1C LTR MaLR 0 467 129 2341 82 0 28 chr1 10768023 10768341 -231896012 - AluY SINE Alu -2 309 1 2362 157 34 42 chr1 10768341 10768469 -231895884 - MLT1C LTR MaLR -338 129 1 326 290 56 9 chr1 10768623 10768730 -231895623 + L2 LINE L2 3202 3313 0 223 286 65 0 chr1 10768728 10768805 -231895548 - MIR SINE MIR -61 201 120 * 470 232 60 20 chr1 10769263 10769414 -231894939 + Charlie2 DNA MER1_type 2663 2819 -43 1108 228 45 62 chr1 10769422 10769832 -231894521 + L1MC5 LINE L1 7246 7648 -313 2287 104 3 0 chr1 10769832 10770130 -231894223 + AluSx SINE Alu 1 299 -13 1108 228 45 62 chr1 10770130 10770202 -231894151 + L1MC5 LINE L1 7648 7720 -241 1306 76 0 0 chr1 10770231 10770389 -231893964 - AluSq SINE Alu -10 303 146 2413 94 3 0 chr1 10770730 10771038 -231893315 - AluSc SINE Alu 0 309 1 864 224 53 12 chr1 10771076 10771321 -231893032 + L1MC5 LINE L1 7662 7916 -45 734 242 93 73 chr1 10771337 10771592 -231892761 + L1M4 LINE L1 3599 3847 -2299 1967 191 78 38 chr1 10771592 10772041 -231892312 + MLT1C LTR MaLR 1 467 0 734 242 93 73 chr1 10772041 10772128 -231892225 + L1M4 LINE L1 3847 3953 -2193 270 56 0 0 chr1 10772128 10772164 -231892189 + (ATG)n Simple_repeat Simple_repeat 3 38 0 734 242 93 73 chr1 10772164 10772217 -231892136 + L1M4 LINE L1 3953 4003 -2143 378 0 0 0 chr1 10772219 10772261 -231892092 + (CA)n Simple_repeat Simple_repeat 2 43 0 858 242 33 15 chr1 10772654 10772927 -231891426 + L1ME3A LINE L1 5685 5962 -208 423 0 0 0 chr1 10772930 10772977 -231891376 + (CA)n Simple_repeat Simple_repeat 2 48 0 1013 191 0 6 chr1 10773007 10773175 -231891178 - MER5A DNA MER1_type -22 167 1 307 278 17 43 chr1 10773214 10773329 -231891024 + L1ME3A LINE L1 5971 6082 -88 26 50 0 0 chr1 10773387 10773427 -231890926 + AT_rich Low_complexity Low_complexity 1 40 0 405 257 79 40 chr1 10773631 10773783 -231890570 - MIR SINE MIR -93 169 12 280 328 46 17 chr1 10773786 10773968 -231890385 + MER5B DNA MER1_type 1 176 -2 301 284 39 29 chr1 10775379 10775481 -231888872 + MIR3 SINE MIR 91 193 -15 2349 97 0 3 chr1 10775535 10775845 -231888508 - AluSg SINE Alu -1 309 1 347 209 90 122 chr1 10776063 10776313 -231888040 + MLT1H LTR MaLR 192 549 0 194 288 110 0 chr1 10776398 10776471 -231887882 - MIR SINE MIR -65 197 117 1979 127 68 6 chr1 10777105 10777443 -231886910 + MLT1B LTR MaLR 25 383 -7 495 242 87 37 chr1 10777841 10778002 -231886351 - MIR SINE MIR -6 256 88 299 254 15 0 chr1 10778188 10778255 -231886098 + MLT1K LTR MaLR 180 247 -341 849 121 38 0 chr1 10778257 10778389 -231885964 + MSTB2 LTR MaLR 1 137 -320 572 218 17 16 chr1 10778394 10778526 -231885827 + MSTB2 LTR MaLR 264 457 0 1154 163 40 26 chr1 10779075 10779302 -231885051 - MER106A DNA MER1_type -1 235 6 2035 117 29 0 chr1 10780266 10780547 -231883806 - AluSx SINE Alu -8 304 16 1250 137 5 46 chr1 10780624 10780762 -231883591 + MER2 DNA MER2_type 2 129 -216 1443 110 64 14 chr1 10780762 10780980 -231883373 - MER30 DNA MER1_type 0 230 2 1250 137 5 46 chr1 10780980 10781060 -231883293 + MER2 DNA MER2_type 129 211 -134 2717 171 42 47 chr1 10781101 10781167 -231883186 + MER6A DNA MER2_type 2 67 -798 1541 62 0 16 chr1 10781167 10781361 -231882992 + L1PA4 LINE L1 5965 6155 0 2717 171 42 47 chr1 10781361 10781843 -231882510 + MER6A DNA MER2_type 67 547 -58 216 228 0 0 chr1 10782127 10782184 -231882169 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 2187 243 70 25 chr1 10783282 10783498 -231880855 + MLT1E2 LTR MaLR 20 225 -401 2012 195 49 21 chr1 10783498 10783883 -231880470 - MSTD LTR MaLR 0 396 1 2187 243 70 25 chr1 10783883 10784238 -231880115 + MLT1E2 LTR MaLR 225 617 -9 838 191 15 0 chr1 10785983 10786114 -231878239 - AluJo SINE Alu -177 135 3 514 278 81 5 chr1 10786915 10787116 -231877237 - MIR SINE MIR -26 236 21 660 246 89 11 chr1 10787303 10787533 -231876820 + MIR SINE MIR 3 241 -21 1073 205 263 18 chr1 10787726 10788117 -231876236 + L2 LINE L2 2827 3313 0 300 279 119 40 chr1 10789342 10789543 -231874810 - MIR SINE MIR -6 256 40 2331 68 0 61 chr1 10789718 10790044 -231874309 + AluY SINE Alu 6 311 0 240 111 0 0 chr1 10790252 10790288 -231874065 + (T)n Simple_repeat Simple_repeat 1 36 0 2215 8 0 0 chr1 10790292 10790537 -231873816 - L1HS LINE L1 -1 6154 5910 * 4159 35 0 3 chr1 10790534 10791122 -231873231 + L1M4 LINE L1 4911 5491 -693 371 273 38 30 chr1 10791475 10791607 -231872746 - MIR SINE MIR -57 205 73 314 203 0 55 chr1 10791723 10791851 -231872502 + CT-rich Low_complexity Low_complexity 2 122 0 533 293 89 22 chr1 10792344 10792569 -231871784 + MIR SINE MIR 2 241 -21 1821 156 71 73 chr1 10792855 10793098 -231871255 + MSTA LTR MaLR 1 244 -184 2470 87 3 0 chr1 10793098 10793407 -231870946 - AluSg SINE Alu 0 310 1 1821 156 71 73 chr1 10793407 10793587 -231870766 + MSTA LTR MaLR 244 423 -5 281 200 27 67 chr1 10795007 10795082 -231869271 + MLT1J2 LTR MaLR 1 72 -378 380 273 10 0 chr1 10795124 10795223 -231869130 - L1ME LINE L1 -504 5662 5563 827 284 78 21 chr1 10795240 10795522 -231868831 + MLT1J2 LTR MaLR 151 448 -2 740 321 95 8 chr1 10796570 10796959 -231867394 + MLT1K LTR MaLR 124 546 -42 2063 243 89 16 chr1 10797123 10797671 -231866682 - MLT1G LTR MaLR -2 588 1 271 339 116 46 chr1 10797703 10798030 -231866323 + L2 LINE L2 2918 3267 -5 332 312 83 0 chr1 10798033 10798142 -231866211 - MIR3 SINE MIR -53 155 38 648 130 3 3 chr1 10798771 10798883 -231865470 + L1PA8A LINE L1 5829 5940 -191 415 287 7 26 chr1 10799388 10799584 -231864769 + L1ME3A LINE L1 5449 5641 -529 274 307 25 25 chr1 10799593 10799756 -231864597 + L1ME3A LINE L1 5800 5962 -208 3990 102 32 4 chr1 10800140 10800678 -231863675 - L1PA10 LINE L1 -2 6166 5614 988 265 80 43 chr1 10800680 10801117 -231863236 + L1ME4a LINE L1 5436 5888 -233 1715 131 0 15 chr1 10801256 10801524 -231862829 + AluSx SINE Alu 43 306 -6 794 228 234 39 chr1 10801536 10802048 -231862305 + L2 LINE L2 2701 3312 -1 471 139 101 0 chr1 10802818 10802897 -231861456 - L1MB1 LINE L1 0 6168 6082 330 185 185 0 chr1 10803912 10803993 -231860360 + L2 LINE L2 3207 3302 -11 300 297 73 42 chr1 10804752 10804917 -231859436 + MIR SINE MIR 84 253 -9 260 260 0 27 chr1 10805181 10805254 -231859099 + MIR SINE MIR 22 92 -116 331 295 16 111 chr1 10805396 10805586 -231858767 - MIR SINE MIR -48 214 43 697 179 99 94 chr1 10806485 10806686 -231857667 - MER20 DNA MER1_type -7 212 11 2479 85 3 0 chr1 10806720 10807027 -231857326 + AluSp SINE Alu 2 309 -4 233 277 24 24 chr1 10808238 10808321 -231856032 - MIR SINE MIR -21 241 159 876 97 8 0 chr1 10808321 10808445 -231855908 + L1MB8 LINE L1 6054 6178 0 267 309 0 0 chr1 10808471 10808568 -231855785 + L1M4 LINE L1 2994 3090 -3056 198 261 0 0 chr1 10808770 10808816 -231855537 + L2 LINE L2 3266 3311 -2 1557 188 0 20 chr1 10809545 10809843 -231854510 - AluJb SINE Alu -20 292 1 230 326 69 0 chr1 10810697 10810841 -231853512 - L1ME LINE L1 -303 5818 5665 * 1975 175 72 22 chr1 10810837 10811293 -231853060 - L1MB7 LINE L1 0 6184 5706 1475 189 18 4 chr1 10811274 10811554 -231852799 - L1M4 LINE L1 -368 5816 5533 * 256 266 65 65 chr1 10811551 10811690 -231852663 - L1MB7 LINE L1 -435 5686 5548 * 6490 38 0 7 chr1 10811920 10812652 -231851701 - L1PA7 LINE L1 -8 6146 5420 239 274 12 122 chr1 10812938 10813044 -231851309 - MIR SINE MIR -6 256 173 1824 164 7 16 chr1 10813044 10813348 -231851005 + AluJo SINE Alu 1 301 -11 239 274 12 122 chr1 10813348 10813405 -231850948 - MIR SINE MIR -89 173 111 1454 242 103 24 chr1 10814325 10814742 -231849611 + MLT1J2 LTR MaLR 1 450 0 278 362 80 7 chr1 10814833 10814971 -231849382 - MIR3 SINE MIR -42 166 19 449 312 25 6 chr1 10815397 10815554 -231848799 - MIR SINE MIR -14 248 89 313 248 76 109 chr1 10815917 10816155 -231848198 + MIR SINE MIR 21 250 -12 989 194 54 0 chr1 10816316 10816502 -231847851 - MER3 DNA MER1_type -10 199 4 386 329 72 6 chr1 10818081 10818248 -231846105 + MIR SINE MIR 59 236 -26 237 210 0 0 chr1 10818270 10818332 -231846021 + (CAT)n Simple_repeat Simple_repeat 1 62 0 314 263 40 40 chr1 10818471 10818570 -231845783 + MER20B DNA MER1_type 95 193 -590 813 239 162 42 chr1 10818743 10818874 -231845479 + MER20B DNA MER1_type 263 377 -406 1181 256 111 55 chr1 10818874 10819398 -231844955 + MLT1H1 LTR MaLR 1 553 -2 813 239 162 42 chr1 10819398 10819550 -231844803 + MER20B DNA MER1_type 377 580 -203 5950 152 41 35 chr1 10819550 10821614 -231842739 - L1PA15 LINE L1 -4 6161 4087 689 225 5 42 chr1 10821614 10821827 -231842526 + MER20B DNA MER1_type 558 762 -21 219 170 0 0 chr1 10823658 10823705 -231840648 + (ATG)n Simple_repeat Simple_repeat 2 48 0 219 300 33 0 chr1 10825263 10825323 -231839030 + L2 LINE L2 3167 3228 -44 184 286 214 10 chr1 10825539 10825637 -231838716 + L2 LINE L2 3150 3267 -5 443 313 37 28 chr1 10826199 10826416 -231837937 - L2 LINE L2 -840 2474 2256 185 379 11 23 chr1 10826823 10826910 -231837443 + L2 LINE L2 2998 3083 -189 276 281 32 74 chr1 10827150 10827367 -231836986 - L1ME3A LINE L1 -1 6169 5962 2078 211 56 59 chr1 10827443 10828411 -231835942 - L1MC5 LINE L1 -440 7521 6478 799 328 75 22 chr1 10828566 10829112 -231835241 - HAL1b LINE L1 -710 638 64 1082 210 122 18 chr1 10829321 10829641 -231834712 - MSTD LTR MaLR 0 396 1 2029 129 10 3 chr1 10829693 10829987 -231834366 - AluSq SINE Alu -16 297 2 316 296 141 21 chr1 10830811 10830953 -231833400 + MIR SINE MIR 2 160 -102 231 304 87 22 chr1 10831691 10831783 -231832570 + L2 LINE L2 3137 3234 -38 252 289 248 13 chr1 10831820 10831969 -231832384 + L2 LINE L2 2356 2539 -775 407 280 47 61 chr1 10832179 10832393 -231831960 - L2 LINE L2 0 3313 3103 2075 277 130 18 chr1 10832408 10833239 -231831114 + L2 LINE L2 2139 3059 -254 585 231 123 51 chr1 10834818 10835013 -231829340 + MER63A DNA MER1_type 2 210 0 2364 93 0 13 chr1 10835095 10835408 -231828945 + AluY SINE Alu 1 309 -2 2046 182 46 57 chr1 10835531 10836054 -231828299 + Charlie1b DNA MER1_type 1 517 -6 3025 82 0 3 chr1 10836179 10836544 -231827809 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr1 10837063 10837084 -231827269 + AT_rich Low_complexity Low_complexity 1 21 0 394 284 35 26 chr1 10838063 10838179 -231826174 + L2 LINE L2 3137 3253 -19 192 200 0 0 chr1 10838180 10838225 -231826128 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 637 214 205 30 chr1 10838915 10839083 -231825270 - MER96B DNA MER1_type? -3 414 192 189 0 0 0 chr1 10839083 10839104 -231825249 + (TGAG)n Simple_repeat Simple_repeat 4 24 0 637 214 205 30 chr1 10839104 10839169 -231825184 - MER96B DNA MER1_type? -225 192 140 2314 125 0 0 chr1 10839355 10839666 -231824687 + AluSq SINE Alu 1 311 -2 547 298 34 14 chr1 10839671 10839879 -231824474 + L1ME4a LINE L1 5653 5864 -257 31 68 0 0 chr1 10839971 10840030 -231824323 + AT_rich Low_complexity Low_complexity 1 59 0 961 50 0 17 chr1 10840590 10840710 -231823643 - L1PA4 LINE L1 -7 6148 6031 2134 110 0 10 chr1 10840712 10841004 -231823349 - AluSc SINE Alu -8 301 13 667 261 144 62 chr1 10841326 10841728 -231822625 + MLT1J1 LTR MaLR 1 435 -11 191 167 28 0 chr1 10843330 10843366 -231820987 - L2 LINE L2 -15 3298 3262 1847 97 4 4 chr1 10843596 10843844 -231820509 - AluSq SINE Alu -25 288 41 233 302 31 10 chr1 10844020 10844116 -231820237 - MIR SINE MIR -90 118 21 530 276 105 19 chr1 10844400 10844610 -231819743 + MIR SINE MIR 18 245 -17 2345 85 3 0 chr1 10844651 10844944 -231819409 + AluSp SINE Alu 1 294 -19 24 32 0 0 chr1 10845740 10845771 -231818582 + AT_rich Low_complexity Low_complexity 1 31 0 375 263 51 28 chr1 10846234 10846503 -231817850 - L1ME4a LINE L1 -50 6071 5710 218 328 95 9 chr1 10846875 10846991 -231817362 - L3b LINE CR1 -149 1434 1309 244 325 80 28 chr1 10847126 10847375 -231816978 - L2 LINE L2 -204 3109 2848 928 274 21 4 chr1 10847660 10847894 -231816459 + MIR SINE MIR 9 246 -16 1997 167 0 0 chr1 10847996 10848301 -231816052 - AluSx SINE Alu -7 305 1 180 97 0 0 chr1 10848559 10848590 -231815763 + (CTA)n Simple_repeat Simple_repeat 2 32 0 2142 135 3 0 chr1 10848901 10849212 -231815141 - AluSx SINE Alu 0 312 1 201 162 0 0 chr1 10849212 10849249 -231815104 + T-rich Low_complexity Low_complexity 1 37 0 2598 301 117 24 chr1 10849280 10850874 -231813479 + L2 LINE L2 1562 3313 0 267 209 30 30 chr1 10850892 10850959 -231813394 - HAL1 LINE L1 -1485 1022 956 288 0 0 0 chr1 10851075 10851107 -231813246 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr1 10851473 10851495 -231812858 + AT_rich Low_complexity Low_complexity 1 22 0 1769 183 63 82 chr1 10853000 10853325 -231811028 - MLT1C LTR MaLR 0 467 152 2183 125 82 17 chr1 10853325 10853677 -231810676 - THE1C LTR MaLR 0 375 1 1769 183 63 82 chr1 10853677 10853827 -231810526 - MLT1C LTR MaLR -315 152 1 333 260 0 0 chr1 10854343 10854420 -231809933 - MLT1K LTR MaLR -2 586 510 487 259 56 7 chr1 10854855 10854998 -231809355 + LTR67 LTR ERVL 408 557 0 281 366 158 14 chr1 10855025 10855530 -231808823 + L2 LINE L2 2224 2801 -513 384 239 23 0 chr1 10855565 10855653 -231808700 + MLT1J2 LTR MaLR 5 94 -356 226 227 0 0 chr1 10855699 10855743 -231808610 - MLT1H LTR MaLR 0 549 506 1241 261 86 0 chr1 10855842 10856168 -231808185 - MLT1H LTR MaLR -195 354 1 644 274 48 0 chr1 10856171 10856339 -231808014 + MIR SINE MIR 72 247 -15 442 232 155 82 chr1 10856860 10857067 -231807286 + MLT1H LTR MaLR 129 350 -199 245 191 79 0 chr1 10857161 10857224 -231807129 + MLT1H LTR MaLR 482 549 0 387 0 0 0 chr1 10858381 10858424 -231805929 + (CA)n Simple_repeat Simple_repeat 1 43 0 329 330 0 8 chr1 10858578 10858696 -231805657 + L2 LINE L2 3136 3252 -20 1053 201 0 16 chr1 10858835 10859024 -231805329 - MER20 DNA MER1_type -1 218 33 254 221 63 63 chr1 10860195 10860290 -231804063 + LTR67 LTR ERVL 459 553 -4 221 200 36 0 chr1 10862178 10862233 -231802120 + GA-rich Low_complexity Low_complexity 4 60 0 327 341 17 12 chr1 10862282 10862455 -231801898 + GA-rich Low_complexity Low_complexity 3 176 0 357 336 8 16 chr1 10866354 10866476 -231797877 - L2 LINE L2 -12 3260 3140 456 231 35 106 chr1 10866725 10866924 -231797429 + L2 LINE L2 3125 3309 -4 2346 277 81 55 chr1 10867109 10868326 -231796027 + L1MEc LINE L1 34 1293 -5103 2259 111 61 25 chr1 10868326 10868688 -231795665 - THE1C LTR MaLR 0 375 1 2346 277 81 55 chr1 10868688 10868867 -231795486 + L1MEc LINE L1 1293 1466 -4930 1673 259 43 42 chr1 10868942 10869452 -231794901 + L1MEc LINE L1 1463 1976 -4420 2175 106 0 0 chr1 10869452 10869734 -231794619 - AluSg SINE Alu -21 289 8 1673 259 43 42 chr1 10869734 10869848 -231794505 + L1MEc LINE L1 1976 2088 -4308 2431 76 0 0 chr1 10871216 10871519 -231792834 + AluY SINE Alu 1 303 -8 394 322 0 0 chr1 10871601 10871722 -231792631 + MLT1I LTR MaLR 57 177 -232 266 314 29 20 chr1 10871752 10871854 -231792499 + MIR SINE MIR 158 260 -2 2028 190 71 29 chr1 10871943 10872464 -231791889 + LTR55 LTR ERV 1 543 -5 913 257 81 37 chr1 10872655 10872927 -231791426 + MLT1K LTR MaLR 3 286 -302 288 266 44 80 chr1 10872976 10873089 -231791264 - MLT1K LTR MaLR -243 345 237 813 263 108 32 chr1 10873098 10873376 -231790977 + MLT1K LTR MaLR 290 588 0 1168 227 49 166 chr1 10873446 10874062 -231790291 + MLT1H1 LTR MaLR 1 588 -7 314 266 9 64 chr1 10874099 10874208 -231790145 + L2 LINE L2 3197 3299 -14 3272 158 71 34 chr1 10875174 10875607 -231788746 + L1MB5 LINE L1 5501 5967 -207 2014 124 28 0 chr1 10875607 10875890 -231788463 + AluSg SINE Alu 1 291 -19 3272 158 71 34 chr1 10875890 10876100 -231788253 + L1MB5 LINE L1 5967 6168 -6 542 304 36 32 chr1 10876660 10876880 -231787473 + MIR SINE MIR 14 234 -28 210 143 0 0 chr1 10877295 10877330 -231787023 + (GGGGA)n Simple_repeat Simple_repeat 2 36 0 241 240 27 13 chr1 10877455 10877530 -231786823 + MLT1K LTR MaLR 512 587 -1 390 294 55 12 chr1 10877701 10877864 -231786489 - MIR SINE MIR -13 249 80 1956 145 10 0 chr1 10878875 10879178 -231785175 - AluSq SINE Alu -7 306 1 363 239 61 1 chr1 10880136 10880245 -231784108 - MIR SINE MIR -61 147 38 2012 113 8 0 chr1 10880282 10880570 -231783783 - AluSx SINE Alu 0 306 17 2375 100 6 0 chr1 10881780 10882091 -231782262 + AluSp SINE Alu 1 313 0 1323 253 104 10 chr1 10882094 10882133 -231782220 + MLT1F LTR MaLR 111 145 -397 246 32 0 0 chr1 10882133 10882164 -231782189 + (CA)n Simple_repeat Simple_repeat 2 32 0 1323 253 104 10 chr1 10882164 10882519 -231781834 + MLT1F LTR MaLR 145 542 0 392 266 28 64 chr1 10882519 10882737 -231781616 + MLT1F-int LTR MaLR 1 210 -1161 4461 140 38 4 chr1 10882838 10883532 -231780821 + MER50 LTR ERV1 1 717 -17 537 305 19 0 chr1 10883539 10883693 -231780660 + MLT1F-int LTR MaLR 445 601 -770 2457 93 0 0 chr1 10883775 10884086 -231780267 + AluY SINE Alu 1 311 0 416 337 44 77 chr1 10884212 10884865 -231779488 + MLT1F-int LTR MaLR 699 1330 -41 2309 250 17 11 chr1 10884898 10885430 -231778923 + MLT1F LTR MaLR 6 540 -2 21192 159 23 15 chr1 10885930 10888544 -231775809 + L1MA2 LINE L1 16 2607 -5116 2013 130 49 32 chr1 10888544 10888913 -231775440 + THE1C LTR MaLR 1 375 0 21192 159 23 15 chr1 10888913 10890682 -231773671 + L1MA2 LINE L1 2607 4360 -3363 2049 155 0 0 chr1 10890682 10890979 -231773374 + AluSx SINE Alu 14 310 -2 21192 159 23 15 chr1 10890979 10891622 -231772731 + L1MA2 LINE L1 4360 4996 -2727 393 22 0 0 chr1 10891622 10891668 -231772685 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 21192 159 23 15 chr1 10891668 10892817 -231771536 + L1MA2 LINE L1 4996 6134 -1589 2484 81 0 10 chr1 10892817 10893125 -231771228 - AluSp SINE Alu -7 306 2 21192 159 23 15 chr1 10893125 10894586 -231769767 + L1MA2 LINE L1 6134 7723 0 254 236 118 9 chr1 10895658 10895768 -231768585 + L1ME4a LINE L1 5993 6114 -7 284 250 13 0 chr1 10896437 10896513 -231767840 + MIR SINE MIR 77 153 -109 2212 111 6 19 chr1 10897212 10897527 -231766826 + AluY SINE Alu 1 311 0 324 103 0 0 chr1 10897527 10897585 -231766768 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 639 273 84 72 chr1 10897790 10898292 -231766061 + HAL1 LINE L1 681 1188 -1319 1862 121 81 4 chr1 10898406 10898679 -231765674 - AluJb SINE Alu -16 296 3 323 278 32 137 chr1 10898727 10898801 -231765552 - MIR SINE MIR -4 258 178 2432 82 0 13 chr1 10898801 10899107 -231765246 - AluSc SINE Alu -7 302 1 323 278 32 137 chr1 10899107 10899309 -231765044 - MIR SINE MIR -84 178 11 2094 169 44 46 chr1 10899310 10899743 -231764610 - Tigger2a DNA MER2_type 0 434 3 561 279 103 69 chr1 10899778 10900052 -231764301 + HAL1 LINE L1 1401 1701 -806 2572 83 0 3 chr1 10900052 10900366 -231763987 - AluSq SINE Alu 0 313 1 561 279 103 69 chr1 10900366 10900596 -231763757 + HAL1 LINE L1 1701 1922 -585 2063 124 39 0 chr1 10900749 10901032 -231763321 + AluSx SINE Alu 1 294 -18 189 94 0 0 chr1 10901133 10901165 -231763188 + (TG)n Simple_repeat Simple_repeat 2 33 0 2021 137 3 7 chr1 10901166 10901458 -231762895 - AluJo SINE Alu -21 291 1 2116 141 64 38 chr1 10901610 10902029 -231762324 + MSTB1 LTR MaLR 3 432 0 948 109 0 0 chr1 10902030 10902158 -231762195 + FLAM_C SINE Alu 1 128 -5 1609 269 69 64 chr1 10902220 10902601 -231761752 + HAL1 LINE L1 1644 2022 -485 1878 183 0 0 chr1 10902601 10902902 -231761451 + AluJb SINE Alu 1 301 -11 1609 269 69 64 chr1 10902902 10903380 -231760973 + HAL1 LINE L1 2022 2507 0 213 322 0 0 chr1 10904496 10904555 -231759798 + GA-rich Low_complexity Low_complexity 3 61 0 21 0 0 0 chr1 10905365 10905386 -231758967 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 10906207 10906233 -231758120 + AT_rich Low_complexity Low_complexity 1 26 0 709 310 8 25 chr1 10906242 10906484 -231757869 - MIR SINE MIR -21 241 4 494 31 16 0 chr1 10906627 10906691 -231757662 + (CA)n Simple_repeat Simple_repeat 2 66 0 250 313 0 15 chr1 10906772 10906839 -231757514 - MIR3 SINE MIR -31 177 112 683 292 64 11 chr1 10908084 10908495 -231755858 + MLT1L LTR MaLR 144 608 -7 234 0 0 0 chr1 10908510 10908536 -231755817 + (CA)n Simple_repeat Simple_repeat 2 27 0 200 300 57 0 chr1 10908570 10908640 -231755713 - MIR SINE MIR -72 190 117 1362 82 0 0 chr1 10908747 10908917 -231755436 + AluSp SINE Alu 138 307 -6 742 332 4 0 chr1 10908922 10909148 -231755205 - MIR SINE MIR -11 251 25 339 289 19 64 chr1 10910177 10910333 -231754020 - MIR SINE MIR -30 232 84 577 90 0 0 chr1 10911494 10911572 -231752781 + MADE1 DNA Mariner 3 80 0 405 141 0 0 chr1 10911578 10911649 -231752704 + (TG)n Simple_repeat Simple_repeat 1 71 0 324 300 45 0 chr1 10912096 10912206 -231752147 + MIR SINE MIR 78 192 -70 255 284 101 18 chr1 10912990 10913099 -231751254 - MLT1K LTR MaLR -469 119 2 2238 97 0 0 chr1 10913178 10913532 -231750821 - AluSc SINE Alu 0 354 1 348 298 12 37 chr1 10913804 10913965 -231750388 + L3 LINE CR1 1212 1368 -209 407 328 55 16 chr1 10913982 10914165 -231750188 + MLT1K LTR MaLR 11 200 -388 486 320 207 4 chr1 10914366 10914622 -231749731 + LTR16C LTR ERVL 158 465 -26 516 258 72 53 chr1 10914783 10914992 -231749361 + MLT1K LTR MaLR 375 587 -1 303 330 5 91 chr1 10914996 10915205 -231749148 + L3 LINE CR1 1370 1560 -17 1846 161 151 19 chr1 10915309 10915687 -231748666 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr1 10916180 10916204 -231748149 + AT_rich Low_complexity Low_complexity 1 24 0 191 114 23 0 chr1 10916819 10916863 -231747490 + CT-rich Low_complexity Low_complexity 1 45 0 1800 172 30 57 chr1 10917869 10918270 -231746083 + MLT1B LTR MaLR 1 390 0 2263 113 0 0 chr1 10919495 10919795 -231744558 - AluSx SINE Alu -12 300 1 332 278 12 87 chr1 10919864 10920066 -231744287 + MIR SINE MIR 19 192 -70 191 269 29 67 chr1 10920126 10920230 -231744123 + MIR SINE MIR 44 143 -65 192 324 19 51 chr1 10920517 10920733 -231743620 + L2 LINE L2 2705 2913 -401 856 247 108 53 chr1 10920869 10921306 -231743047 - MLT1C LTR MaLR 0 467 7 790 167 0 69 chr1 10921343 10921517 -231742836 + MER20 DNA MER1_type 58 219 0 589 186 20 0 chr1 10922283 10922385 -231741968 + U6 snRNA snRNA 3 106 -1 209 347 81 16 chr1 10924046 10924170 -231740183 + MIR SINE MIR 73 204 -58 1023 250 176 34 chr1 10924310 10925047 -231739306 + L2 LINE L2 2432 3297 -16 522 258 15 0 chr1 10925073 10925205 -231739148 + MIR SINE MIR 9 142 -120 528 310 81 22 chr1 10925518 10925841 -231738512 - MLT1K LTR MaLR -162 426 85 3072 85 19 5 chr1 10926133 10926555 -231737798 + MSTA LTR MaLR 1 428 0 457 239 170 0 chr1 10926606 10926765 -231737588 + MIR SINE MIR 77 262 0 233 29 0 29 chr1 10927560 10927595 -231736758 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 335 331 29 14 chr1 10927797 10927936 -231736417 + MIR3 SINE MIR 60 200 -8 344 281 83 46 chr1 10928759 10928976 -231735377 - MIR SINE MIR -6 256 32 1487 204 28 37 chr1 10929005 10929074 -231735279 + MLT1A2 LTR MaLR 25 93 -281 1951 149 98 15 chr1 10929074 10929410 -231734943 - THE1B LTR MaLR 0 364 1 11697 102 6 1 chr1 10929410 10930982 -231733371 - THE1B-int LTR MaLR 0 1580 1 2048 139 106 6 chr1 10930982 10931313 -231733040 - THE1B LTR MaLR 0 364 1 1487 204 28 37 chr1 10931313 10931594 -231732759 + MLT1A2 LTR MaLR 90 374 0 258 323 131 8 chr1 10931724 10931854 -231732499 + MIR SINE MIR 109 254 -8 410 290 14 28 chr1 10932912 10933057 -231731296 + MIR SINE MIR 8 150 -112 205 246 18 0 chr1 10933714 10933771 -231730582 - L2 LINE L2 -16 3256 3199 338 167 218 19 chr1 10933864 10933986 -231730367 - MLT1E1 LTR MaLR -335 319 118 * 343 229 0 73 chr1 10933970 10934079 -231730274 - MLT1E1 LTR MaLR -497 157 57 180 272 163 11 chr1 10934293 10934385 -231729968 - L2 LINE L2 -46 3267 3162 2381 98 0 0 chr1 10934581 10934886 -231729467 + AluSg SINE Alu 1 305 -5 260 382 10 0 chr1 10935417 10935519 -231728834 + L2 LINE L2 3170 3272 0 1213 181 45 67 chr1 10935625 10935956 -231728397 - MER33 DNA MER1_type 0 324 1 444 331 58 58 chr1 10938151 10938562 -231725791 - L2 LINE L2 -5 3267 2857 273 246 103 48 chr1 10938626 10938752 -231725601 - MIR3 SINE MIR -35 173 41 272 68 0 23 chr1 10939211 10939255 -231725098 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 842 112 0 41 chr1 10939519 10939688 -231724665 + (GGGA)n Simple_repeat Simple_repeat 3 164 0 205 156 0 0 chr1 10940545 10940577 -231723776 + (TTG)n Simple_repeat Simple_repeat 2 33 0 215 275 33 22 chr1 10941195 10941286 -231723067 + L2 LINE L2 2911 3002 -270 1692 168 89 77 chr1 10942732 10943214 -231721139 + MLT1D LTR MaLR 1 488 -17 1564 171 65 78 chr1 10943214 10943398 -231720955 + MLT1B LTR MaLR 1 186 -204 1920 134 7 39 chr1 10943398 10943704 -231720649 + AluSx SINE Alu 1 296 -16 1564 171 65 78 chr1 10943704 10943904 -231720449 + MLT1B LTR MaLR 186 380 -10 305 298 57 66 chr1 10945132 10945360 -231718993 + MIR SINE MIR 30 255 -7 3131 181 12 7 chr1 10945375 10945495 -231718858 + MER68 LTR ERV1 1 119 -443 2188 111 62 31 chr1 10945495 10945848 -231718505 - THE1B LTR MaLR 0 364 1 3131 181 12 7 chr1 10945848 10946286 -231718067 + MER68 LTR ERV1 119 562 0 329 291 70 20 chr1 10946345 10946544 -231717809 - LTR33 LTR ERVL 0 521 313 242 225 0 14 chr1 10946642 10946705 -231717648 + GA-rich Low_complexity Low_complexity 3 66 -6 2535 152 72 77 chr1 10946705 10947319 -231717034 - LTR36 LTR ERV1 0 611 1 434 232 14 51 chr1 10948489 10948627 -231715726 + MIR SINE MIR 64 196 -66 313 214 112 11 chr1 10949155 10949244 -231715109 - MLT1J LTR MaLR -200 311 214 220 316 0 0 chr1 10949292 10949349 -231715004 + L2 LINE L2 2587 2643 -671 216 308 64 0 chr1 10949379 10949457 -231714896 + L2 LINE L2 2606 2688 -626 291 292 51 25 chr1 10949577 10949714 -231714639 + MER5A DNA MER1_type 13 163 -26 291 119 0 0 chr1 10949996 10950038 -231714315 + MIR SINE MIR 215 256 -6 32 57 0 0 chr1 10950413 10950466 -231713887 + AT_rich Low_complexity Low_complexity 1 53 0 394 153 42 0 chr1 10950548 10950620 -231713733 + MER116 DNA Mariner 2 76 -4 2503 230 60 5 chr1 10950667 10951220 -231713133 + MLT1G LTR MaLR 3 585 -5 446 214 104 35 chr1 10951391 10951564 -231712789 + MER20 DNA MER1_type 1 185 -34 623 299 45 37 chr1 10952010 10952365 -231711988 - L1MC4a LINE L1 -1927 5881 5524 2679 177 68 29 chr1 10952393 10952941 -231711412 + MER39 LTR ERV1 76 644 -63 236 310 0 0 chr1 10954000 10954087 -231710266 + L1MC4 LINE L1 6614 6700 -1342 33 43 0 0 chr1 10954146 10954193 -231710160 + AT_rich Low_complexity Low_complexity 1 47 0 2456 71 7 3 chr1 10954228 10954536 -231709817 + AluY SINE Alu 1 309 -2 1246 279 55 69 chr1 10955079 10955485 -231708868 + L1ME1 LINE L1 22 417 -5979 2435 83 7 0 chr1 10955485 10955787 -231708566 - AluSg SINE Alu -6 304 1 1246 279 55 69 chr1 10955787 10956004 -231708349 + L1ME1 LINE L1 417 636 -5760 3535 244 48 47 chr1 10956011 10957480 -231706873 + L1ME1 LINE L1 872 2342 -3873 727 151 32 8 chr1 10957480 10957606 -231706747 + L1MC1 LINE L1 6196 6324 -9 3535 244 48 47 chr1 10957606 10958448 -231705905 + L1ME1 LINE L1 2342 3182 -3033 * 5766 214 70 39 chr1 10958446 10960153 -231704200 + L1ME1 LINE L1 3495 5326 -909 1707 117 8 19 chr1 10960153 10960418 -231703935 + L1PA10 LINE L1 5895 6156 -12 5766 214 70 39 chr1 10960418 10961353 -231703000 + L1ME1 LINE L1 5326 6231 -4 329 254 0 9 chr1 10961636 10961731 -231702622 + (CATA)n Simple_repeat Simple_repeat 3 98 -13 1502 29 0 0 chr1 10961731 10961905 -231702448 - L1PA4 LINE L1 -5 6150 5977 329 254 0 9 chr1 10961905 10961919 -231702434 + (CATA)n Simple_repeat Simple_repeat 98 111 0 377 313 122 15 chr1 10962275 10962610 -231701743 + L2 LINE L2 2343 2713 -601 267 244 154 0 chr1 10962668 10962746 -231701607 + L2 LINE L2 3223 3312 -1 465 255 87 39 chr1 10963058 10963266 -231701087 - MIR SINE MIR -13 249 32 1520 56 17 0 chr1 10963526 10963705 -231700648 - AluY SINE Alu -129 182 1 1711 134 3 75 chr1 10964544 10964878 -231699475 + AluJb SINE Alu 1 312 0 901 241 14 5 chr1 10964969 10965176 -231699177 - MER58 DNA MER1_type -2196 224 16 225 208 19 0 chr1 10965974 10966027 -231698326 - MIR SINE MIR -54 208 155 1339 242 87 34 chr1 10966027 10966521 -231697832 + MER34B LTR ERV1 1 543 -13 797 185 22 0 chr1 10966521 10966656 -231697697 + MLT1A1 LTR MaLR 1 138 -227 2498 138 18 39 chr1 10966656 10966852 -231697501 + MSTB LTR MaLR 1 200 -226 3602 104 4 12 chr1 10966852 10967370 -231696983 + MER75 DNA T2_type 1 514 0 2498 138 18 39 chr1 10967370 10967608 -231696745 + MSTB LTR MaLR 200 426 0 1385 141 0 60 chr1 10967607 10967633 -231696720 + MLT1A1 LTR MaLR 133 159 -206 * 2288 97 7 3 chr1 10967633 10967931 -231696422 + AluSx SINE Alu 1 299 -13 1385 141 0 60 chr1 10967931 10968152 -231696201 + MLT1A1 LTR MaLR 159 365 0 280 304 0 0 chr1 10968172 10968251 -231696102 - MIR SINE MIR -104 158 80 205 313 16 16 chr1 10968246 10968310 -231696043 - L2 LINE L2 -10 3262 3199 * 1619 231 74 14 chr1 10968540 10968973 -231695380 - MLT1C LTR MaLR -8 459 1 679 233 0 0 chr1 10969814 10969943 -231694410 - MER58B DNA MER1_type 0 341 213 1065 185 16 0 chr1 10969946 10970033 -231694320 + MER20 DNA MER1_type 1 85 -134 2193 136 79 57 chr1 10970033 10970329 -231694024 - MLT1C LTR MaLR 0 467 156 2412 79 0 0 chr1 10970329 10970619 -231693734 - AluY SINE Alu -21 290 1 2193 136 79 57 chr1 10970619 10970779 -231693574 - MLT1C LTR MaLR -311 156 1 1065 185 16 0 chr1 10970779 10970875 -231693478 + MER20 DNA MER1_type 85 187 -32 524 271 26 7 chr1 10971701 10971856 -231692497 - MIR3 SINE MIR -23 185 28 1840 257 114 25 chr1 10971934 10972565 -231691788 + MER115 DNA AcHobo 1 687 -6 4518 55 2 0 chr1 10972664 10973213 -231691140 + L1PA7 LINE L1 5600 6149 -5 416 281 115 10 chr1 10973776 10973968 -231690385 - MIR SINE MIR -29 233 22 235 289 74 16 chr1 10974059 10974180 -231690173 - MIR SINE MIR -72 190 63 254 71 0 24 chr1 10974441 10974483 -231689870 + (CAT)n Simple_repeat Simple_repeat 2 42 0 321 356 15 8 chr1 10974491 10974623 -231689730 - MIR SINE MIR -112 150 18 282 309 49 8 chr1 10975608 10975731 -231688622 + MIR SINE MIR 33 160 -102 2322 97 3 10 chr1 10976419 10976730 -231687623 - AluSc SINE Alu 0 309 1 2290 99 3 3 chr1 10977522 10977824 -231686529 + AluSg SINE Alu 1 302 -8 321 320 48 34 chr1 10978059 10978206 -231686147 + MER5B DNA MER1_type 1 149 -29 835 263 160 38 chr1 10978495 10978944 -231685409 + MLT1K LTR MaLR 76 579 -9 656 269 13 70 chr1 10979353 10979669 -231684684 - L2 LINE L2 -1 3312 3015 3359 128 25 35 chr1 10980218 10980782 -231683571 + L1PB3 LINE L1 5574 6131 -23 392 229 12 0 chr1 10981492 10981575 -231682778 - MER115 DNA AcHobo -1 692 609 226 276 17 0 chr1 10982114 10982172 -231682181 - Zaphod DNA AcHobo -3964 67 9 1569 100 0 9 chr1 10982460 10982670 -231681683 + AluSg1 SINE Alu 58 265 -44 1789 153 38 0 chr1 10982670 10982957 -231681396 - THE1B LTR MaLR -66 298 1 502 207 35 59 chr1 10983151 10983320 -231681033 - MER113 DNA MER1_type? -178 343 179 365 312 54 51 chr1 10983750 10984045 -231680308 + L2 LINE L2 3017 3312 -1 406 322 35 14 chr1 10984854 10984997 -231679356 - L2 LINE L2 0 3272 3127 257 291 22 99 chr1 10985149 10985331 -231679022 + L2 LINE L2 2887 3054 -218 210 247 27 14 chr1 10985607 10985680 -231678673 - MIR SINE MIR -105 103 30 425 303 9 0 chr1 10985753 10985862 -231678491 - MER94 DNA DNA -1 133 24 2450 70 3 0 chr1 10986232 10986534 -231677819 - AluY SINE Alu -6 305 3 2399 190 22 71 chr1 10986928 10987508 -231676845 + MLT2B3 LTR ERVL 1 552 -2 472 297 53 19 chr1 10987668 10987877 -231676476 + L2 LINE L2 2871 3086 -227 247 366 11 0 chr1 10988032 10988125 -231676228 + L2 LINE L2 3173 3266 -6 388 171 145 34 chr1 10988727 10988844 -231675509 - L2 LINE L2 0 3313 3184 207 244 0 0 chr1 10988974 10989015 -231675338 - L2 LINE L2 -11 3302 3262 2296 117 0 0 chr1 10989186 10989493 -231674860 + AluSg SINE Alu 1 307 -3 1247 125 0 0 chr1 10989556 10989724 -231674629 - AluJb SINE Alu -11 301 134 340 260 63 39 chr1 10989864 10989991 -231674362 + MIR SINE MIR 18 147 -61 2277 200 74 4 chr1 10989995 10990466 -231673887 - MLT1D LTR MaLR -1 504 1 673 286 6 0 chr1 10991309 10991484 -231672869 - MIR SINE MIR -11 251 76 884 178 6 25 chr1 10991537 10991694 -231672659 + MER20 DNA MER1_type 59 212 -7 211 211 0 0 chr1 10991859 10991897 -231672456 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 419 179 19 57 chr1 10992238 10992344 -231672009 - ORSL DNA AcHobo -2 273 172 621 158 18 104 chr1 10992390 10992554 -231671799 + Tigger2 DNA MER2_type 1 150 -2568 * 2108 172 23 0 chr1 10992538 10992892 -231671461 + Tigger2 DNA MER2_type 2350 2711 -7 576 210 17 17 chr1 10992896 10993015 -231671338 - ORSL DNA AcHobo -156 119 1 1652 223 100 83 chr1 10993116 10993695 -231670658 - MLT1E LTR MaLR -4 589 1 318 252 17 42 chr1 10993752 10993871 -231670482 + L2 LINE L2 2929 3044 -269 1871 134 47 0 chr1 10994773 10995048 -231669305 - AluJb SINE Alu -24 288 1 1900 206 64 9 chr1 10995224 10995660 -231668693 + MER31B LTR ERV1 7 466 0 1681 180 70 17 chr1 10995926 10996282 -231668071 + THE1C LTR MaLR 1 375 0 201 343 0 0 chr1 10996370 10996536 -231667817 + (CA)n Simple_repeat Simple_repeat 1 166 0 221 250 0 0 chr1 10996557 10996605 -231667748 + (CA)n Simple_repeat Simple_repeat 1 48 0 200 298 86 68 chr1 10996611 10996903 -231667450 + L2 LINE L2 2966 3262 -10 185 279 13 0 chr1 10996923 10997002 -231667351 + GA-rich Low_complexity Low_complexity 4 83 0 4190 25 4 2 chr1 10997143 10997628 -231666725 - L1PA4 LINE L1 -2 6153 5668 2091 21 0 0 chr1 10997628 10997862 -231666491 + L1PA4 LINE L1 5435 5668 -487 2311 122 0 3 chr1 10997914 10998226 -231666127 + AluSx SINE Alu 1 311 -1 518 256 62 23 chr1 10998410 10998586 -231665767 - MIR SINE MIR -34 228 46 2256 109 16 0 chr1 10998699 10999030 -231665323 - AluSx SINE Alu 0 338 3 275 191 15 0 chr1 10999507 10999575 -231664778 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 422 260 72 50 chr1 11000775 11000956 -231663397 - MIR SINE MIR -15 247 63 258 222 0 16 chr1 11001087 11001150 -231663203 - MIR SINE MIR -26 236 175 246 333 13 0 chr1 11001188 11001266 -231663087 - MIR SINE MIR -183 79 1 1077 254 100 58 chr1 11001348 11001879 -231662474 - MLT1H1 LTR MaLR -2 553 1 195 42 0 0 chr1 11002011 11002035 -231662318 + (TAA)n Simple_repeat Simple_repeat 1 24 0 565 268 16 52 chr1 11002040 11002234 -231662119 - MIR SINE MIR -12 250 64 421 250 83 22 chr1 11002567 11002747 -231661606 + MLT1F1 LTR MaLR 371 561 -6 450 250 18 61 chr1 11002748 11002912 -231661441 + MIR SINE MIR 56 212 -50 3804 135 42 54 chr1 11002963 11003706 -231660647 + L1MB3 LINE L1 5450 6183 0 524 279 48 69 chr1 11004046 11004379 -231659974 + HAL1 LINE L1 176 501 -2006 2700 242 138 37 chr1 11004384 11005659 -231658694 + HAL1 LINE L1 1104 2507 0 2289 89 0 10 chr1 11005789 11006139 -231658214 - AluSx SINE Alu 0 312 1 210 37 0 0 chr1 11006501 11006528 -231657825 + (TC)n Simple_repeat Simple_repeat 1 27 0 306 164 0 0 chr1 11006528 11006583 -231657770 + (CA)n Simple_repeat Simple_repeat 2 56 0 2269 102 0 23 chr1 11007430 11007735 -231656618 - AluSc SINE Alu -11 298 1 824 297 128 20 chr1 11008092 11008546 -231655807 + L2 LINE L2 2811 3313 0 357 159 0 0 chr1 11008549 11008612 -231655741 + (TGGA)n Simple_repeat Simple_repeat 1 63 0 505 314 15 15 chr1 11009330 11009534 -231654819 + L1ME4a LINE L1 5744 5947 -174 2431 71 0 0 chr1 11009541 11009849 -231654504 + AluSg SINE Alu 1 308 0 879 117 17 0 chr1 11009958 11010078 -231654275 - FRAM SINE Alu -32 144 23 392 268 43 53 chr1 11010414 11010623 -231653730 + L2 LINE L2 2854 3060 -212 1906 139 3 50 chr1 11010844 11011167 -231653186 + AluSx SINE Alu 1 308 -4 260 381 38 12 chr1 11013971 11014131 -231650222 - L2 LINE L2 -610 2704 2541 861 257 23 35 chr1 11014166 11014423 -231649930 + MIR SINE MIR 9 262 0 396 40 0 0 chr1 11015941 11015991 -231648362 + (TG)n Simple_repeat Simple_repeat 2 51 0 2641 26 0 0 chr1 11016029 11016333 -231648020 - L1PA2 LINE L1 -4 6151 5848 8978 21 0 0 chr1 11016333 11017864 -231646489 + L1PA2 LINE L1 4343 5873 -282 21 57 0 0 chr1 11019175 11019210 -231645143 + AT_rich Low_complexity Low_complexity 1 35 0 240 314 92 46 chr1 11019610 11019849 -231644504 + L2 LINE L2 2934 3183 -89 377 261 200 0 chr1 11019877 11019992 -231644361 + MER5A DNA MER1_type 46 183 -6 377 231 114 29 chr1 11020176 11020317 -231644036 + MIR SINE MIR 9 163 -45 278 185 11 65 chr1 11020322 11020414 -231643939 - L2 LINE L2 -24 3289 3203 21 71 0 0 chr1 11020415 11020457 -231643896 + AT_rich Low_complexity Low_complexity 1 42 0 1073 192 10 0 chr1 11020827 11021025 -231643328 - MER3 DNA MER1_type -9 200 1 226 246 16 0 chr1 11021033 11021094 -231643259 - MER5A DNA MER1_type 0 189 128 234 232 89 0 chr1 11021182 11021238 -231643115 - MER5A DNA MER1_type -122 67 7 331 275 128 27 chr1 11021698 11021847 -231642506 - MER5B DNA MER1_type -10 168 5 390 303 54 11 chr1 11022269 11022454 -231641899 - L1ME4a LINE L1 -252 5869 5677 389 288 151 27 chr1 11023048 11023267 -231641086 + MIR SINE MIR 8 253 -9 1708 166 9 31 chr1 11023267 11023586 -231640767 - AluJo SINE Alu 0 312 1 323 306 29 40 chr1 11023618 11023791 -231640562 - MIR SINE MIR -78 184 14 21 57 0 0 chr1 11023996 11024031 -231640322 + AT_rich Low_complexity Low_complexity 1 35 0 408 104 0 0 chr1 11024066 11024133 -231640220 + (T)n Simple_repeat Simple_repeat 1 67 0 267 289 218 13 chr1 11024994 11025150 -231639203 + MER5A DNA MER1_type 2 189 0 325 243 199 15 chr1 11025174 11025310 -231639043 - MER5A DNA MER1_type -6 183 23 1098 179 18 46 chr1 11025335 11025553 -231638800 + MER20B DNA MER1_type 1 212 -7 3583 133 21 4 chr1 11026298 11026816 -231637537 + MER1A DNA MER1_type 1 527 0 2991 170 13 31 chr1 11027587 11028135 -231636218 - MLT2B3 LTR ERVL -16 538 1 657 212 60 0 chr1 11028523 11028674 -231635679 + MIR SINE MIR 102 261 -1 241 273 91 20 chr1 11028996 11029095 -231635258 + MIR SINE MIR 8 113 -149 195 233 23 0 chr1 11029157 11029200 -231635153 + L2 LINE L2 3218 3261 -11 220 139 0 0 chr1 11030173 11030209 -231634144 + MIR SINE MIR 113 148 -114 243 352 41 28 chr1 11030702 11030847 -231633506 + MIR SINE MIR 28 174 -88 924 89 0 0 chr1 11030861 11030973 -231633380 - AluSq/x SINE Alu -184 129 18 1541 51 0 0 chr1 11030973 11031151 -231633202 + AluSq SINE Alu 136 313 0 805 210 28 23 chr1 11031945 11032121 -231632232 - MER58 DNA MER1_type -164 177 1 518 266 20 64 chr1 11033383 11033586 -231630767 + L3 LINE CR1 1097 1290 -287 267 191 32 16 chr1 11033636 11033699 -231630654 - MER20B DNA MER1_type -13 770 707 1562 151 26 79 chr1 11033782 11034086 -231630267 - AluSg SINE Alu -22 288 1 779 249 100 17 chr1 11034247 11034707 -231629646 - MER20B DNA MER1_type -240 543 1 810 201 80 20 chr1 11034751 11035009 -231629344 - MIR SINE MIR -8 254 6 225 272 37 12 chr1 11035036 11035117 -231629236 + L3 LINE CR1 1375 1457 -120 395 329 87 7 chr1 11035204 11035427 -231628926 - L2 LINE L2 -315 2998 2762 212 185 15 62 chr1 11035586 11035651 -231628702 + GA-rich Low_complexity Low_complexity 4 65 0 735 176 22 140 chr1 11036938 11037099 -231627254 + MIR SINE MIR 32 162 -100 4225 151 20 22 chr1 11037099 11037833 -231626520 + L1MB3 LINE L1 5450 6182 -1 735 176 22 140 chr1 11037833 11037893 -231626460 + MIR SINE MIR 162 227 -35 224 337 74 34 chr1 11037957 11038132 -231626221 + L2 LINE L2 3122 3303 -10 340 339 53 12 chr1 11038598 11038769 -231625584 - MIR3 SINE MIR -19 189 12 4928 168 24 14 chr1 11039211 11040163 -231624190 + L1 LINE L1 4084 5045 -1101 1205 170 81 24 chr1 11040164 11040411 -231623942 + MSTB LTR MaLR 163 423 -3 707 203 25 6 chr1 11040420 11040583 -231623770 + L1 LINE L1 5107 5272 -874 347 331 135 30 chr1 11041032 11041403 -231622950 + L2 LINE L2 2240 2649 -665 763 186 12 47 chr1 11041470 11041490 -231622863 - L1ME3A LINE L1 -8 6162 6143 2686 115 57 34 chr1 11041490 11041908 -231622445 - MSTC LTR MaLR 0 428 1 763 186 12 47 chr1 11041908 11042059 -231622294 - L1ME3A LINE L1 -27 6143 5997 1610 254 46 55 chr1 11042064 11043272 -231621081 - L1ME3A LINE L1 -354 5816 4623 27152 129 11 17 chr1 11043275 11044003 -231620350 - L1PA8A LINE L1 0 6446 5715 2778 89 20 0 chr1 11044003 11044351 -231620002 - THE1A LTR MaLR 0 355 1 27152 129 11 17 chr1 11044351 11045537 -231618816 - L1PA8A LINE L1 -731 5715 4523 2753 13 0 0 chr1 11045537 11045836 -231618517 + AluYa5 SINE Alu 1 299 -12 27152 129 11 17 chr1 11045836 11047241 -231617112 - L1PA8A LINE L1 -1923 4523 3110 2077 139 3 3 chr1 11047241 11047551 -231616802 - AluSg SINE Alu 0 310 1 27152 129 11 17 chr1 11047551 11049423 -231614930 - L1PA8A LINE L1 -3336 3110 1261 252 111 0 0 chr1 11049423 11049468 -231614885 + (TTG)n Simple_repeat Simple_repeat 2 46 0 27152 129 11 17 chr1 11049468 11050719 -231613634 - L1PA8A LINE L1 -5185 1261 3 1251 82 0 0 chr1 11050789 11050947 -231613406 - MLT2A1 LTR ERVL -81 363 206 1618 258 98 15 chr1 11050955 11051568 -231612785 - L1ME3A LINE L1 -1517 4629 3966 252 0 0 0 chr1 11051719 11051747 -231612606 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 448 277 88 112 chr1 11051776 11052115 -231612238 + L2 LINE L2 2933 3263 -9 193 284 189 11 chr1 11052123 11052218 -231612135 + MIR3 SINE MIR 91 202 -6 308 286 32 79 chr1 11052823 11053075 -231611278 + L2 LINE L2 3072 3311 -2 654 304 69 50 chr1 11053329 11053589 -231610764 - MLT1I LTR MaLR -77 332 68 267 328 115 0 chr1 11054330 11054452 -231609901 - L2 LINE L2 0 3272 3137 1731 208 2 46 chr1 11054933 11055169 -231609184 - MER63B DNA MER1_type -667 395 183 1454 68 45 0 chr1 11055169 11055345 -231609008 - L1PA7 LINE L1 -3 6151 5968 1731 208 2 46 chr1 11055345 11055521 -231608832 - MER63B DNA MER1_type -879 183 1 279 197 105 13 chr1 11055606 11055682 -231608671 + MLT1H LTR MaLR 453 535 -14 2477 231 10 20 chr1 11055927 11056523 -231607830 - L1ME2 LINE L1 -10 6154 5565 300 243 14 0 chr1 11056523 11056597 -231607756 - MER69 DNA AcHobo -370 2156 2082 338 308 46 15 chr1 11056911 11057041 -231607312 + L2 LINE L2 3180 3313 0 207 327 47 37 chr1 11057203 11057310 -231607043 + L2 LINE L2 3137 3244 -28 1844 182 109 17 chr1 11057345 11057703 -231606650 + MSTD LTR MaLR 4 394 -2 749 310 10 0 chr1 11057900 11058100 -231606253 + MLT1J2 LTR MaLR 7 208 -242 375 245 0 41 chr1 11058213 11058311 -231606042 + MLT1J2 LTR MaLR 352 445 -5 1178 180 61 56 chr1 11058430 11058458 -231605895 + MSTD LTR MaLR 1 27 -369 1519 221 115 11 chr1 11058458 11058815 -231605538 + MSTD LTR MaLR 1 394 -2 1178 180 61 56 chr1 11058815 11059128 -231605225 + MSTD LTR MaLR 27 393 -3 2331 54 14 4 chr1 11059182 11059459 -231604894 + L1PA8 LINE L1 5890 6169 -3 536 202 88 9 chr1 11059896 11060010 -231604343 + LTR67 LTR ERVL 432 554 -3 2938 177 34 14 chr1 11060447 11061005 -231603348 + L1MB7 LINE L1 5496 6064 -120 2918 10 0 0 chr1 11061001 11061319 -231603034 - L1PA3 LINE L1 -102 6053 5733 * 871 0 0 48 chr1 11061319 11061416 -231602937 + L1PA3 LINE L1 6056 6155 0 361 87 0 0 chr1 11061519 11061565 -231602788 + MLT2B2 LTR ERVL 470 515 0 579 183 0 9 chr1 11061698 11061813 -231602540 + L1MB8 LINE L1 6044 6157 -21 231 296 111 0 chr1 11061847 11061928 -231602425 - L2 LINE L2 -12 3260 3171 586 264 89 29 chr1 11061969 11062215 -231602138 - L1ME LINE L1 -339 5782 5522 2417 76 3 0 chr1 11062309 11062612 -231601741 + AluY SINE Alu 1 304 -7 5363 126 39 72 chr1 11062890 11064055 -231600298 + pTR5 LTR ERV1 742 2025 -413 298 224 41 31 chr1 11064055 11064153 -231600200 + LTR30 LTR ERV1 544 642 -80 1537 111 4 4 chr1 11064156 11064382 -231599971 + pTR5 LTR ERV1 172 397 -2041 204 318 30 0 chr1 11064639 11064705 -231599648 + MIR SINE MIR 83 150 -58 604 227 85 0 chr1 11065083 11065224 -231599129 + MLT1G LTR MaLR 7 159 -431 88 67 0 0 chr1 11065227 11065392 -231598961 + AT_rich Low_complexity Low_complexity 1 165 0 294 292 31 44 chr1 11065395 11065607 -231598746 - MER106B DNA MER1_type -25 211 1 594 253 51 51 chr1 11065608 11065861 -231598492 + MLT1G LTR MaLR 151 403 -187 1183 281 66 19 chr1 11065894 11066644 -231597709 - L1MEc LINE L1 -3557 3384 2644 2481 65 0 10 chr1 11066664 11066972 -231597381 - AluY SINE Alu -6 305 1 357 296 47 17 chr1 11067131 11067364 -231596989 - L1MEc LINE L1 -4725 2397 2158 233 279 10 107 chr1 11067427 11067501 -231596852 - L1MEc LINE L1 -4880 2051 1971 1773 166 24 0 chr1 11067501 11067790 -231596563 - AluJb SINE Alu -8 304 9 233 279 10 107 chr1 11067790 11067912 -231596441 - L1MEc LINE L1 -4960 1971 1874 264 234 21 69 chr1 11067955 11068100 -231596253 - L1MEc LINE L1 -5061 1870 1733 223 178 0 0 chr1 11068106 11068151 -231596202 + (TA)n Simple_repeat Simple_repeat 2 46 0 232 240 53 0 chr1 11068169 11068244 -231596109 - L1MEc LINE L1 -4932 1491 1413 2351 88 0 3 chr1 11068467 11068773 -231595580 - AluY SINE Alu -6 305 1 311 271 75 15 chr1 11069216 11069349 -231595004 - MIR SINE MIR -65 197 57 225 0 0 0 chr1 11070789 11070814 -231593539 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 206 343 15 0 chr1 11070976 11071043 -231593310 - L2 LINE L2 0 3313 3246 372 304 95 6 chr1 11071447 11071605 -231592748 + L2 LINE L2 3137 3308 -5 234 191 22 112 chr1 11071696 11071782 -231592571 + MER68 LTR ERV1 3 80 -482 1266 220 130 71 chr1 11071782 11072259 -231592094 - MLT1D LTR MaLR 0 505 1 2113 205 44 5 chr1 11072311 11072740 -231591613 + MER68 LTR ERV1 117 562 0 217 175 25 0 chr1 11072762 11072802 -231591551 - L2 LINE L2 -261 3052 3012 202 241 11 126 chr1 11072773 11072860 -231591493 - MIR SINE MIR -90 118 42 * 257 59 0 0 chr1 11072849 11072883 -231591470 + MIR SINE MIR 119 152 -110 944 285 26 3 chr1 11072883 11073357 -231590996 - LTR33 LTR ERVL -9 512 1 304 278 0 46 chr1 11073364 11073472 -231590881 + MIR SINE MIR 150 252 -10 237 256 0 0 chr1 11073495 11073577 -231590776 + GA-rich Low_complexity Low_complexity 2 83 0 184 239 315 0 chr1 11073590 11073682 -231590671 + L2 LINE L2 3193 3313 0 374 275 106 14 chr1 11073770 11073912 -231590441 - MIR3 SINE MIR -51 157 3 708 158 33 0 chr1 11074237 11074357 -231589996 + AluY SINE Alu 188 311 0 2701 142 36 5 chr1 11074551 11074966 -231589387 - MSTA LTR MaLR 0 428 1 198 0 0 0 chr1 11074993 11075015 -231589338 + (CAA)n Simple_repeat Simple_repeat 3 24 0 516 256 198 64 chr1 11075167 11075651 -231588702 + MLT1H LTR MaLR 1 549 0 242 293 81 40 chr1 11075955 11076054 -231588299 - L3b LINE CR1 -9 1574 1472 547 318 55 18 chr1 11076112 11076329 -231588024 + MIR SINE MIR 37 261 -1 338 359 69 13 chr1 11076567 11076726 -231587627 + MIR SINE MIR 20 187 -75 457 339 76 0 chr1 11076898 11077069 -231587284 - L2 LINE L2 -280 3033 2850 1879 160 21 59 chr1 11077069 11077444 -231586909 - MLT1C LTR MaLR -106 361 1 521 266 23 8 chr1 11077444 11077572 -231586781 + L2 LINE L2 3184 3313 0 1034 282 222 15 chr1 11077611 11078160 -231586193 - L2 LINE L2 -947 2367 1705 228 328 94 12 chr1 11078966 11079137 -231585216 - MIR SINE MIR -77 185 1 312 281 114 0 chr1 11079387 11079501 -231584852 + L1MD3 LINE L1 7869 7995 0 1179 196 25 49 chr1 11079673 11079999 -231584354 - MER33 DNA MER1_type 0 324 7 219 359 0 0 chr1 11080021 11080113 -231584240 + MIR SINE MIR 47 138 -124 204 83 0 100 chr1 11080399 11080459 -231583894 + (GGGA)n Simple_repeat Simple_repeat 3 56 0 188 379 129 0 chr1 11080945 11081069 -231583284 - L2 LINE L2 -35 3237 3098 779 233 67 84 chr1 11081336 11081776 -231582577 + L2 LINE L2 2622 3044 -269 1424 208 185 50 chr1 11081776 11082257 -231582096 + MLT1H LTR MaLR 1 546 -3 779 233 67 84 chr1 11082257 11082508 -231581845 + L2 LINE L2 3044 3298 -15 658 296 49 16 chr1 11082553 11082800 -231581553 - MIR SINE MIR -7 255 1 405 0 0 0 chr1 11082814 11082859 -231581494 + (CA)n Simple_repeat Simple_repeat 2 46 0 226 261 15 85 chr1 11083716 11083761 -231580592 + MIR SINE MIR 107 154 -108 2252 114 0 0 chr1 11083761 11084060 -231580293 + AluSx SINE Alu 1 299 -13 226 261 15 85 chr1 11084060 11084144 -231580209 + MIR SINE MIR 154 227 -35 272 279 101 17 chr1 11084324 11084503 -231579850 + L2 LINE L2 2817 3010 -303 252 252 47 9 chr1 11084587 11084694 -231579659 - L2 LINE L2 -247 3025 2915 209 278 179 20 chr1 11085137 11085288 -231579065 + L2 LINE L2 3048 3222 -91 203 250 0 0 chr1 11085288 11085332 -231579021 + (TG)n Simple_repeat Simple_repeat 2 45 0 515 200 9 9 chr1 11085551 11085656 -231578697 + L2 LINE L2 3209 3313 0 739 237 82 14 chr1 11086248 11086467 -231577886 + MIR SINE MIR 29 262 0 413 341 81 30 chr1 11086728 11087062 -231577291 - L2 LINE L2 -18 3254 2904 905 200 104 18 chr1 11087258 11087478 -231576875 - MLT1A1 LTR MaLR 0 365 127 352 274 65 48 chr1 11087763 11088011 -231576342 + L2 LINE L2 2829 3080 -192 2526 52 0 19 chr1 11088022 11088330 -231576023 - AluY SINE Alu -9 302 1 370 349 30 0 chr1 11088430 11088562 -231575791 + L2 LINE L2 3137 3272 0 2021 182 45 26 chr1 11088725 11089149 -231575204 + MSTB1 LTR MaLR 1 432 0 216 97 0 0 chr1 11090295 11090326 -231574027 + (A)n Simple_repeat Simple_repeat 1 31 0 5548 145 39 32 chr1 11091028 11092347 -231572006 - Ricksha DNA DNA -10 3244 1889 682 125 0 0 chr1 11092350 11092494 -231571859 - AluSg/x SINE Alu 0 345 202 1069 167 21 0 chr1 11092497 11092683 -231571670 - Ricksha DNA DNA -1350 1896 1707 572 191 8 24 chr1 11092665 11092791 -231571562 - Ricksha DNA DNA -3114 132 9 * 552 269 93 56 chr1 11092878 11093202 -231571151 + HAL1 LINE L1 1316 1651 -856 373 239 39 39 chr1 11093548 11093678 -231570675 - L3 LINE CR1 -110 1467 1338 353 264 76 21 chr1 11093680 11093824 -231570529 - MIR3 SINE MIR 0 208 57 405 0 0 0 chr1 11094239 11094284 -231570069 + (TTA)n Simple_repeat Simple_repeat 3 47 0 432 0 0 0 chr1 11094947 11094995 -231569358 + (TTA)n Simple_repeat Simple_repeat 3 50 0 404 309 16 0 chr1 11095079 11095202 -231569151 + MER94 DNA DNA 7 131 -3 418 268 237 11 chr1 11095204 11095394 -231568959 - MIR SINE MIR -28 234 2 374 290 41 21 chr1 11095768 11095913 -231568440 + LTR33 LTR ERVL 65 212 -309 520 241 23 8 chr1 11096117 11096250 -231568103 - L2 LINE L2 -4 3309 3175 238 279 127 57 chr1 11096805 11097034 -231567319 + MIR SINE MIR 17 261 -1 368 265 26 8 chr1 11097642 11097759 -231566594 + MIR SINE MIR 28 146 -116 2075 116 71 14 chr1 11098049 11098402 -231565951 - THE1C LTR MaLR 0 375 3 1418 201 113 36 chr1 11098497 11098603 -231565750 + MLT1D LTR MaLR 40 136 -369 2215 117 27 78 chr1 11098603 11099014 -231565339 + MLT1B LTR MaLR 1 390 0 1418 201 113 36 chr1 11099014 11099102 -231565251 + MLT1D LTR MaLR 136 216 -289 1231 126 126 166 chr1 11099102 11099548 -231564805 + MSTA LTR MaLR 1 428 0 1418 201 113 36 chr1 11099548 11099769 -231564584 + MLT1D LTR MaLR 216 488 -17 408 259 104 0 chr1 11100189 11100324 -231564029 - MIR SINE MIR -113 149 1 265 296 80 37 chr1 11100405 11100567 -231563786 + L3b LINE CR1 1320 1488 -95 234 0 0 0 chr1 11100882 11100908 -231563445 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 288 0 0 0 chr1 11100907 11100939 -231563414 + (CA)n Simple_repeat Simple_repeat 1 32 0 2233 100 3 3 chr1 11101128 11101427 -231562926 - AluSx SINE Alu -13 299 1 674 284 58 23 chr1 11101459 11102078 -231562275 - L1MEd LINE L1 -3707 2434 1813 * 3528 207 40 13 chr1 11102075 11102866 -231561487 - L1MB8 LINE L1 -6 6172 5360 23 0 0 0 chr1 11102880 11102903 -231561450 + AT_rich Low_complexity Low_complexity 1 23 0 728 281 123 48 chr1 11102924 11103153 -231561200 - L1MEd LINE L1 -4482 1647 1436 849 113 0 71 chr1 11103153 11103294 -231561059 - FLAM_C SINE Alu 0 133 3 728 281 123 48 chr1 11103294 11103890 -231560463 - L1MEd LINE L1 -4693 1436 817 2965 10 0 0 chr1 11104046 11104360 -231559993 - AluYb8 SINE Alu -4 314 1 180 216 0 0 chr1 11105255 11105292 -231559061 + L2 LINE L2 3268 3304 -9 2085 118 20 3 chr1 11105391 11105706 -231558647 - AluSx SINE Alu 0 312 1 260 231 157 8 chr1 11105925 11106046 -231558307 - L1MDa LINE L1 -5124 1416 1278 2191 186 4 15 chr1 11106089 11106546 -231557807 + L1PB4 LINE L1 3261 3712 -2434 2311 176 31 2 chr1 11106546 11106962 -231557391 + MSTA LTR MaLR 1 428 0 5572 170 50 3 chr1 11106962 11107937 -231556416 + MSTA-int LTR MaLR 16 1036 -615 1025 149 0 0 chr1 11107902 11108056 -231556297 - MST-int LTR MaLR -535 1116 963 * 3052 161 19 29 chr1 11108058 11109275 -231555078 + L1PB4 LINE L1 4122 5350 -806 2287 114 7 3 chr1 11109275 11109582 -231554771 + AluSg SINE Alu 1 308 -2 3052 161 19 29 chr1 11109582 11109729 -231554624 + L1PB4 LINE L1 5350 5497 -659 3052 124 53 32 chr1 11109729 11110217 -231554136 + L1PB4 LINE L1 5618 6120 -36 2238 102 0 23 chr1 11110217 11110522 -231553831 + AluSp SINE Alu 1 298 -15 3052 124 53 32 chr1 11110522 11110558 -231553795 + L1PB4 LINE L1 6120 6154 -2 351 0 0 0 chr1 11110717 11110756 -231553597 + (CA)n Simple_repeat Simple_repeat 2 40 0 257 207 35 0 chr1 11110777 11110835 -231553518 - MIR SINE MIR -62 146 87 569 246 120 5 chr1 11111143 11111334 -231553019 + MIR SINE MIR 2 214 -48 2322 87 0 0 chr1 11111348 11111664 -231552689 - AluSq SINE Alu 0 316 1 405 243 223 15 chr1 11112719 11112921 -231551432 + MIR SINE MIR 19 262 0 381 341 0 0 chr1 11112950 11113073 -231551280 + L2 LINE L2 3149 3271 -1 2195 92 3 14 chr1 11113116 11113408 -231550945 - AluSp SINE Alu -24 289 1 1180 208 7 26 chr1 11113433 11113702 -231550651 + L1MD3 LINE L1 7732 7995 0 565 247 52 65 chr1 11113869 11114059 -231550294 + MIR SINE MIR 12 200 -62 2829 10 0 0 chr1 11114059 11114360 -231549993 + AluYa5 SINE Alu 1 301 -10 565 247 52 65 chr1 11114360 11114400 -231549953 + MIR SINE MIR 200 239 -23 1931 132 0 64 chr1 11114461 11114772 -231549581 + AluSx SINE Alu 1 291 -21 312 137 0 0 chr1 11115120 11115171 -231549182 + (CA)n Simple_repeat Simple_repeat 1 51 0 258 227 136 83 chr1 11115956 11116088 -231548265 + L2 LINE L2 3152 3290 -23 728 281 25 17 chr1 11116592 11116827 -231547526 + MIR SINE MIR 13 249 -13 1114 126 0 13 chr1 11117412 11117571 -231546782 + FRAM SINE Alu 13 169 -7 277 156 0 0 chr1 11118136 11118181 -231546172 + MIR SINE MIR 81 125 -83 219 178 0 22 chr1 11118287 11118332 -231546021 + (CAT)n Simple_repeat Simple_repeat 3 46 0 564 333 80 21 chr1 11118602 11119025 -231545328 + L2 LINE L2 2866 3313 0 183 262 0 0 chr1 11119406 11119448 -231544905 - L3 LINE CR1 -562 1015 974 198 260 0 60 chr1 11120448 11120498 -231543855 - L2 LINE L2 -200 3072 3026 553 297 178 25 chr1 11120599 11121202 -231543151 + L2 LINE L2 2369 3060 -253 1534 176 13 54 chr1 11121303 11121687 -231542666 + L1MB8 LINE L1 5773 6146 -32 1742 121 5 80 chr1 11121687 11122058 -231542295 - MER4A LTR ERV1 0 664 263 655 121 0 10 chr1 11122058 11122157 -231542196 - MER4A LTR ERV1 -566 98 1 27 0 0 0 chr1 11122313 11122340 -231542013 + AT_rich Low_complexity Low_complexity 1 27 0 290 308 6 44 chr1 11122546 11122728 -231541625 + L2 LINE L2 2340 2514 -800 346 194 15 0 chr1 11122774 11122841 -231541512 + Tigger2 DNA MER2_type 2 69 -2649 * 2583 148 20 26 chr1 11122826 11123026 -231541327 + Tigger2 DNA MER2_type 2268 2468 -250 2682 43 0 0 chr1 11123026 11123327 -231541026 - AluY SINE Alu -10 301 1 2583 148 20 26 chr1 11123327 11123579 -231540774 + Tigger2 DNA MER2_type 2468 2717 -1 2357 81 0 20 chr1 11124688 11124986 -231539367 + AluY SINE Alu 1 292 -19 311 239 49 65 chr1 11125104 11125122 -231539231 + L1ME3A LINE L1 4517 4534 -1612 1223 212 9 0 chr1 11125122 11125344 -231539009 + MER58A DNA MER1_type 1 224 0 311 239 49 65 chr1 11125344 11125509 -231538844 + L1ME3A LINE L1 4534 4697 -1449 2783 109 104 0 chr1 11125679 11126119 -231538234 + LTR19A LTR ERV1 1 486 0 1238 237 162 30 chr1 11126162 11126355 -231537998 + L1ME3A LINE L1 4698 4864 -1282 1836 112 24 0 chr1 11126355 11126604 -231537749 - AluSg SINE Alu -10 300 46 1238 237 162 30 chr1 11126604 11127010 -231537343 + L1ME3A LINE L1 4864 5376 -770 1476 227 79 42 chr1 11127013 11127532 -231536821 + L1ME3A LINE L1 5585 6122 -48 545 186 0 0 chr1 11127694 11127791 -231536562 + FRAM SINE Alu 72 168 -8 9384 99 31 12 chr1 11127791 11128791 -231535562 - Tigger1 DNA MER2_type -210 2208 1174 1781 166 10 16 chr1 11128791 11129105 -231535248 - AluJb SINE Alu 0 312 1 9384 99 31 12 chr1 11129105 11129449 -231534904 - Tigger1 DNA MER2_type -1244 1174 838 212 321 0 0 chr1 11129493 11129549 -231534804 + (CA)n Simple_repeat Simple_repeat 2 57 0 228 306 96 64 chr1 11129579 11130105 -231534248 + L2 LINE L2 2682 3221 -51 954 193 71 42 chr1 11131117 11131356 -231532997 + ORSL DNA AcHobo 1 246 -29 234 316 25 0 chr1 11131459 11131538 -231532815 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 1240 238 57 3 chr1 11131544 11131843 -231532510 - MLT1E LTR MaLR 0 593 279 469 157 0 0 chr1 11131852 11131922 -231532431 - AluJ/FLAM SINE Alu -241 71 2 258 61 0 0 chr1 11131925 11131958 -231532395 - Tigger1 DNA MER2_type -1237 1181 1149 * 337 221 54 9 chr1 11131957 11132148 -231532205 - MLT1E LTR MaLR -286 368 83 419 246 161 0 chr1 11132206 11132336 -231532017 - MIR SINE MIR -32 230 80 793 168 138 6 chr1 11132552 11132719 -231531634 - MER5A DNA MER1_type 0 189 1 260 280 125 42 chr1 11132728 11132896 -231531457 - MER5A DNA MER1_type -1 188 7 1904 133 28 0 chr1 11133723 11134008 -231530345 + AluSx SINE Alu 1 293 -19 207 249 55 166 chr1 11134485 11134702 -231529651 - MIR SINE MIR -19 243 51 2071 153 72 48 chr1 11135082 11135270 -231529083 + MSTA LTR MaLR 1 183 -245 2050 130 0 0 chr1 11135270 11135577 -231528776 + AluSx SINE Alu 1 307 -5 2071 153 72 48 chr1 11135577 11135806 -231528547 + MSTA LTR MaLR 183 428 0 2310 149 37 42 chr1 11135864 11136101 -231528252 - MSTA LTR MaLR 0 428 192 2088 113 0 3 chr1 11136101 11136392 -231527961 - AluSc SINE Alu -19 290 1 2310 149 37 42 chr1 11136392 11136584 -231527769 - MSTA LTR MaLR -236 192 1 870 186 52 107 chr1 11140403 11140822 -231523531 + MLT1D LTR MaLR 1 390 0 874 281 136 63 chr1 11140839 11142124 -231522229 + L1MEd LINE L1 149 1568 -4742 1621 138 64 22 chr1 11143785 11144097 -231520256 - L1MA4 LINE L1 -6 6294 5970 337 309 68 25 chr1 11144973 11145135 -231519218 + MER102b DNA MER1_type 1 169 -172 290 267 114 0 chr1 11145323 11145428 -231518925 + MER94 DNA DNA 2 118 -16 201 94 0 0 chr1 11145544 11145576 -231518777 + (T)n Simple_repeat Simple_repeat 1 32 0 984 237 18 9 chr1 11145746 11145970 -231518383 - MIR SINE MIR -28 234 9 2052 79 0 0 chr1 11146709 11146974 -231517379 + AluSx SINE Alu 35 299 -13 182 352 66 0 chr1 11146981 11147072 -231517281 - L2 LINE L2 -80 3192 3096 554 307 90 14 chr1 11147203 11147415 -231516938 + MIR SINE MIR 23 250 -12 248 269 0 19 chr1 11148893 11148945 -231515408 + MIR SINE MIR 22 72 -190 1142 222 0 30 chr1 11149322 11149552 -231514801 - MER58A DNA MER1_type -1 223 1 1605 161 0 8 chr1 11150027 11150288 -231514065 + AluJo SINE Alu 1 259 -53 927 228 0 36 chr1 11150288 11150481 -231513872 + MER58A DNA MER1_type 39 224 0 827 151 0 0 chr1 11150501 11150627 -231513726 + FRAM SINE Alu 39 164 -12 180 300 0 0 chr1 11150808 11150848 -231513505 + L2 LINE L2 3214 3253 -19 761 221 39 93 chr1 11151530 11151741 -231512612 - MIR SINE MIR -35 173 9 283 311 56 67 chr1 11151800 11151980 -231512373 - MIR3 SINE MIR -11 197 20 23 54 0 0 chr1 11153580 11153617 -231510736 + GC_rich Low_complexity Low_complexity 1 37 0 319 309 109 23 chr1 11154868 11155043 -231509310 - L1MC2 LINE L1 -430 5914 5725 2148 99 0 40 chr1 11155064 11155387 -231508966 + AluSx SINE Alu 3 312 0 370 255 20 10 chr1 11155415 11155513 -231508840 + MER94 DNA DNA 1 99 -35 453 300 63 53 chr1 11155534 11155941 -231508412 - L1MC2 LINE L1 -582 5660 5255 435 331 134 37 chr1 11155955 11156258 -231508095 - L1MC2 LINE L1 -907 5239 4886 1632 226 8 16 chr1 11156258 11156625 -231507728 + MLT1A1 LTR MaLR 1 364 -1 435 331 134 37 chr1 11156625 11156723 -231507630 - L1MC2 LINE L1 -1260 4886 4799 238 333 132 8 chr1 11156811 11156940 -231507413 + MER102b DNA MER1_type 164 308 -33 3250 72 65 0 chr1 11157555 11157985 -231506368 + LTR22A LTR ERVK 1 458 0 273 299 41 10 chr1 11158345 11158442 -231505911 - MIR SINE MIR -108 154 55 3105 202 14 3 chr1 11158613 11159262 -231505091 - L1MB7 LINE L1 -10 6174 5519 21 36 0 0 chr1 11159539 11159567 -231504786 + AT_rich Low_complexity Low_complexity 1 28 0 4684 223 103 16 chr1 11159883 11160432 -231503921 + L1MC4 LINE L1 6447 6946 -1096 357 24 0 0 chr1 11160432 11160474 -231503879 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 4684 223 103 16 chr1 11160474 11161249 -231503104 + L1MC4 LINE L1 6946 7887 -155 1744 168 7 3 chr1 11161375 11161678 -231502675 + AluJb SINE Alu 1 304 -8 631 123 16 8 chr1 11161678 11161800 -231502553 + GA-rich Low_complexity Low_complexity 1 123 0 304 293 73 6 chr1 11161916 11162080 -231502273 + L1ME2 LINE L1 976 1150 -4969 2325 223 22 50 chr1 11162461 11163004 -231501349 + MLT2B3 LTR ERVL 27 554 0 928 264 54 70 chr1 11163027 11163987 -231500366 + L1ME2 LINE L1 1263 2409 -3720 316 270 51 82 chr1 11164042 11164238 -231500115 + L1ME2 LINE L1 2556 2745 -3384 1709 263 103 47 chr1 11164238 11165208 -231499145 + L1ME2 LINE L1 3951 4865 -1282 2160 92 3 3 chr1 11165208 11165503 -231498850 - AluSx SINE Alu -15 297 3 1709 263 103 47 chr1 11165503 11165809 -231498544 + L1ME2 LINE L1 4865 5152 -995 1857 149 0 0 chr1 11165809 11166125 -231498228 + AluJb SINE Alu 5 320 0 1709 263 103 47 chr1 11166125 11166688 -231497665 + L1ME2 LINE L1 5152 5906 -241 2443 62 0 3 chr1 11166695 11167001 -231497352 - AluY SINE Alu -6 305 1 495 220 102 0 chr1 11167719 11167837 -231496516 + MER94 DNA DNA 1 130 -4 239 150 0 0 chr1 11168227 11168267 -231496086 + L2 LINE L2 3270 3309 -4 272 274 131 46 chr1 11168295 11168470 -231495883 + L2 LINE L2 2887 3076 -196 481 186 186 21 chr1 11168534 11168679 -231495674 + MER96B DNA MER1_type? 12 180 -237 584 178 25 76 chr1 11168685 11168842 -231495511 - MER5A DNA MER1_type -40 149 1 1167 219 139 3 chr1 11169003 11169291 -231495062 + MLT1D LTR MaLR 1 327 -178 326 217 29 0 chr1 11169318 11169387 -231494966 + L2 LINE L2 2897 2967 -305 1719 154 0 20 chr1 11169467 11169603 -231494750 + AluJb SINE Alu 1 138 -174 2170 113 3 3 chr1 11169603 11169914 -231494439 + AluSq SINE Alu 1 311 -2 1719 154 0 20 chr1 11169914 11170082 -231494271 + AluJb SINE Alu 138 299 -13 1211 117 0 0 chr1 11170239 11170418 -231493935 + FRAM SINE Alu 1 171 -5 2060 178 36 64 chr1 11170457 11170703 -231493650 + MLT1C LTR MaLR 1 229 -238 2408 68 0 0 chr1 11170703 11171012 -231493341 - AluY SINE Alu -2 309 1 2060 178 36 64 chr1 11171012 11171237 -231493116 + MLT1C LTR MaLR 229 459 -8 240 369 10 10 chr1 11171394 11171497 -231492856 - MLT1L LTR MaLR -295 320 218 369 231 0 13 chr1 11171623 11171701 -231492652 - ORSL DNA AcHobo -7 268 192 427 152 13 25 chr1 11171738 11171817 -231492536 - ORSL DNA AcHobo -189 86 9 239 254 0 17 chr1 11171828 11171887 -231492466 - MLT1L LTR MaLR -557 58 1 1340 222 76 22 chr1 11172103 11172473 -231491880 + MLT1B LTR MaLR 1 390 0 307 216 111 17 chr1 11172476 11172589 -231491764 - MIR3 SINE MIR -48 160 33 531 300 20 35 chr1 11173682 11173882 -231490471 + L2 LINE L2 2895 3091 -181 225 263 0 18 chr1 11174254 11174311 -231490042 + LTR67 LTR ERVL 494 549 -8 283 323 50 20 chr1 11174344 11174443 -231489910 + L2 LINE L2 3166 3267 -5 1485 173 39 0 chr1 11174865 11175120 -231489233 - MER58B DNA MER1_type 0 341 77 1591 94 4 13 chr1 11175122 11175356 -231488997 + L1PA14 LINE L1 5930 6161 0 6235 85 20 2 chr1 11175761 11176620 -231487733 + L1PA13 LINE L1 5271 6144 -19 693 0 0 0 chr1 11176625 11176702 -231487651 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 196 231 31 31 chr1 11176702 11176761 -231487592 + MIR SINE MIR 198 256 -6 441 276 144 52 chr1 11177467 11177848 -231486505 + LTR16A LTR ERVL 25 440 -10 503 312 138 32 chr1 11178453 11179248 -231485105 - L2 LINE L2 -38 3275 2382 1649 199 51 74 chr1 11179256 11179729 -231484624 + MLT1C LTR MaLR 6 467 0 2351 104 0 0 chr1 11180902 11181209 -231483144 - AluSc SINE Alu -2 307 1 488 179 38 0 chr1 11181219 11181325 -231483028 - L1MB8 LINE L1 -1 6177 6068 1560 101 0 0 chr1 11182220 11182418 -231481935 + AluY SINE Alu 105 302 -9 321 274 52 22 chr1 11182560 11182695 -231481658 + LTR67 LTR ERVL 419 557 0 306 304 20 29 chr1 11182823 11182925 -231481428 - LTR67 LTR ERVL -344 213 113 1916 148 21 10 chr1 11183593 11183884 -231480469 + AluJb SINE Alu 1 294 -18 371 311 87 71 chr1 11183888 11183951 -231480402 + HAL1 LINE L1 10 70 -2437 2262 107 3 0 chr1 11183951 11184242 -231480111 - AluSx SINE Alu -18 294 3 371 311 87 71 chr1 11184242 11184728 -231479625 + HAL1 LINE L1 70 568 -1939 281 251 69 86 chr1 11184802 11184977 -231479376 + HAL1 LINE L1 699 870 -1637 442 244 208 5 chr1 11184992 11185189 -231479164 + MIR SINE MIR 11 247 -15 1236 280 138 52 chr1 11185272 11185353 -231479000 + HAL1 LINE L1 991 1064 -1443 2257 117 0 3 chr1 11185353 11185653 -231478700 + AluSq SINE Alu 1 299 -14 1236 280 138 52 chr1 11185653 11186681 -231477672 + HAL1 LINE L1 1064 2195 -312 610 184 0 0 chr1 11186728 11186826 -231477527 + MER2 DNA MER2_type 2 99 -246 315 223 121 48 chr1 11186948 11187114 -231477239 + HAL1 LINE L1 2317 2494 -13 382 308 101 20 chr1 11187233 11187431 -231476922 - MIR SINE MIR -17 245 32 521 363 29 12 chr1 11187537 11187777 -231476576 + MLT1I LTR MaLR 1 244 -165 6612 176 8 33 chr1 11187803 11189594 -231474759 + L1PA14 LINE L1 4106 5942 -219 1601 139 119 32 chr1 11189594 11189939 -231474414 - THE1C LTR MaLR 0 375 1 10020 121 16 36 chr1 11189939 11191549 -231472804 - THE1C-int LTR MaLR 0 1580 3 1664 169 67 25 chr1 11191551 11191911 -231472442 - THE1C LTR MaLR 0 375 1 6612 176 8 33 chr1 11191911 11192189 -231472164 + L1PA14 LINE L1 5942 6158 -3 638 173 80 49 chr1 11192232 11192394 -231471959 + L1MC5 LINE L1 6668 6834 -1127 * 3167 177 78 35 chr1 11192375 11192680 -231471673 + L1MD1 LINE L1 1747 2037 -4503 2102 198 33 54 chr1 11192680 11193196 -231471157 + MLT1D LTR MaLR 1 505 0 3167 177 78 35 chr1 11193196 11193702 -231470651 + L1MD1 LINE L1 2037 2593 -3947 526 242 28 11 chr1 11193717 11193899 -231470454 + L1MD1 LINE L1 2827 3011 -3529 1794 149 21 24 chr1 11193903 11194231 -231470122 - THE1C LTR MaLR 0 375 49 2157 134 39 22 chr1 11194231 11194589 -231469764 - THE1B LTR MaLR 0 364 1 2216 109 3 0 chr1 11194589 11194900 -231469453 - THE1B-int LTR MaLR 0 1580 1269 939 266 48 25 chr1 11194929 11195365 -231468988 - Charlie7 DNA MER1_type -187 2425 1980 561 182 48 53 chr1 11195369 11195543 -231468810 + MER6 DNA MER2_type -64 838 -27 9602 108 2 2 chr1 11195543 11196826 -231467527 - THE1B-int LTR MaLR -296 1284 1 2435 135 28 6 chr1 11196826 11197182 -231467171 - THE1B LTR MaLR 0 364 1 384 109 0 0 chr1 11197182 11197237 -231467116 - MSTA LTR MaLR -373 55 1 10240 126 34 5 chr1 11197237 11198773 -231465580 - THE1C-int LTR MaLR 0 1580 1 1984 141 24 29 chr1 11198773 11199150 -231465203 - THE1C LTR MaLR 0 375 1 5548 220 63 59 chr1 11199150 11200806 -231463547 + L1MD1 LINE L1 3014 4681 -1859 2274 95 0 10 chr1 11200806 11201101 -231463252 + AluSg SINE Alu 1 292 -18 5548 220 63 59 chr1 11201101 11201533 -231462820 + L1MD1 LINE L1 4681 5110 -1430 510 345 17 0 chr1 11201556 11201794 -231462559 + L1PA15 LINE L1 8 249 -7332 2085 186 61 19 chr1 11201807 11202279 -231462074 + LTR22B LTR ERVK 1 492 0 4255 209 18 5 chr1 11202279 11203324 -231461029 + L1PA15 LINE L1 3135 5053 -2531 365 159 0 29 chr1 11203324 11203393 -231460960 + THE1C LTR MaLR 1 67 -308 1571 147 38 24 chr1 11203432 11203724 -231460629 - THE1C LTR MaLR 0 375 80 8912 168 26 6 chr1 11203746 11205603 -231458750 + L1PA15 LINE L1 5082 6967 -636 3556 39 0 5 chr1 11205608 11206078 -231458275 - L1PA3 LINE L1 0 6155 5727 285 256 66 8 chr1 11206317 11206438 -231457915 + MIR SINE MIR 65 192 -70 4144 139 2 5 chr1 11206647 11207285 -231457068 + L1PA15 LINE L1 6952 7587 -16 2509 42 0 0 chr1 11207285 11207597 -231456756 - AluY SINE Alu 0 312 1 2017 140 0 4 chr1 11207634 11207912 -231456441 + AluSx SINE Alu 1 277 -35 844 76 0 23 chr1 11207912 11208044 -231456309 + (GGAA)n Simple_repeat Simple_repeat 4 132 0 3652 189 85 51 chr1 11208129 11209207 -231455146 + L1MD1 LINE L1 5172 6309 -327 1915 145 0 44 chr1 11209207 11209524 -231454829 + AluJo SINE Alu 1 303 -9 3652 189 85 51 chr1 11209524 11209825 -231454528 + L1MD1 LINE L1 6309 6598 -38 238 159 0 32 chr1 11209861 11209924 -231454429 + L1MD2 LINE L1 6298 6358 -1 * 285 309 132 23 chr1 11209906 11210126 -231454227 + L1ME3A LINE L1 5927 6170 0 557 247 62 19 chr1 11210138 11210300 -231454053 + MLT1I LTR MaLR 240 408 -1 1284 209 13 57 chr1 11210475 11210790 -231453563 + MLT1B LTR MaLR 8 308 -82 603 162 0 10 chr1 11211611 11211710 -231452643 + MER4A LTR ERV1 1 98 -566 1831 121 161 75 chr1 11211710 11212082 -231452271 + MER4A LTR ERV1 261 664 0 2327 100 0 10 chr1 11212393 11212704 -231451649 + AluSx SINE Alu 1 308 -4 197 261 62 15 chr1 11212720 11212785 -231451568 - L3 LINE CR1 -211 1366 1299 182 284 57 34 chr1 11214174 11214262 -231450091 + MIR SINE MIR 84 173 -89 548 239 84 7 chr1 11214553 11214708 -231449645 - MIR SINE MIR -35 227 61 2421 87 3 0 chr1 11214763 11215063 -231449290 + AluSq SINE Alu 1 301 -12 696 201 39 22 chr1 11215906 11216085 -231448268 + MER53 DNA DNA 1 182 -7 402 307 214 7 chr1 11216352 11216811 -231447542 - L2 LINE L2 -39 3274 2708 315 330 0 0 chr1 11216856 11216947 -231447406 - MER96 DNA MER1_type? 0 175 85 223 310 84 7 chr1 11218325 11218467 -231445886 - MIR SINE MIR -63 199 47 303 305 153 11 chr1 11218701 11218878 -231445475 + MIR SINE MIR 47 248 -14 200 184 0 41 chr1 11219226 11219275 -231445078 + L2 LINE L2 3030 3076 -196 1985 162 180 34 chr1 11219538 11219949 -231444404 + MLT2B1 LTR ERVL 4 486 -34 198 118 0 0 chr1 11219949 11219983 -231444370 + (TA)n Simple_repeat Simple_repeat 2 35 0 1985 162 180 34 chr1 11219983 11220016 -231444337 + MLT2B1 LTR ERVL 486 513 -7 3353 199 32 28 chr1 11220277 11220889 -231443464 + L1MB8 LINE L1 5449 6066 -112 2584 47 3 0 chr1 11220889 11221186 -231443167 + AluY SINE Alu 1 298 -13 3353 199 32 28 chr1 11221186 11221300 -231443053 + L1MB8 LINE L1 6066 6178 0 195 129 0 0 chr1 11223321 11223352 -231441001 + (CACG)n Simple_repeat Simple_repeat 1 31 0 1214 261 86 59 chr1 11223555 11223927 -231440426 - L1ME3A LINE L1 -5 6165 5772 2494 69 10 0 chr1 11223927 11224232 -231440121 + AluY SINE Alu 1 308 -3 1214 261 86 59 chr1 11224232 11224404 -231439949 - L1ME3A LINE L1 -398 5772 5606 521 292 14 0 chr1 11224412 11224556 -231439797 - L1ME LINE L1 -468 5702 5557 383 241 48 54 chr1 11224576 11224742 -231439611 - MIR SINE MIR -78 184 20 2023 104 11 24 chr1 11224852 11225187 -231439166 + AluSx SINE Alu 1 331 0 215 226 0 19 chr1 11225259 11225312 -231439041 + (CTA)n Simple_repeat Simple_repeat 1 52 0 601 254 0 30 chr1 11225333 11225502 -231438851 - MIR SINE MIR 0 262 99 192 262 0 0 chr1 11226489 11226531 -231437822 + MIR SINE MIR 33 74 -134 1728 179 18 34 chr1 11226648 11227028 -231437325 + MLT1A2 LTR MaLR 1 374 0 34 0 0 0 chr1 11227042 11227076 -231437277 + AT_rich Low_complexity Low_complexity 1 34 0 226 219 94 43 chr1 11227579 11227704 -231436649 + MIR3 SINE MIR 52 186 -22 2346 79 3 28 chr1 11227934 11228251 -231436102 + AluSc SINE Alu 1 309 0 1824 83 0 4 chr1 11228671 11228901 -231435452 - AluY SINE Alu -82 229 1 1231 152 20 53 chr1 11229301 11229545 -231434808 - MER46A DNA MER2_type 0 236 1 851 248 66 0 chr1 11229663 11229889 -231434464 - MIR SINE MIR 0 262 22 259 227 299 0 chr1 11230265 11230362 -231433991 + MLT1I LTR MaLR 9 134 -275 21 0 0 0 chr1 11230904 11230925 -231433428 + AT_rich Low_complexity Low_complexity 1 21 0 535 294 73 45 chr1 11230948 11231193 -231433160 + L2 LINE L2 2973 3224 -48 2195 94 0 18 chr1 11231207 11231493 -231432860 + AluSx SINE Alu 1 311 0 208 100 0 0 chr1 11231493 11231523 -231432830 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 560 264 28 7 chr1 11231550 11231694 -231432659 - MIR SINE MIR -24 238 92 810 204 94 5 chr1 11231908 11232099 -231432254 + MER20 DNA MER1_type 2 209 -10 298 285 23 46 chr1 11232967 11233097 -231431256 - MIR SINE MIR -46 216 90 265 299 46 0 chr1 11233350 11233437 -231430916 + MIR SINE MIR 56 146 -116 269 252 26 122 chr1 11233600 11233715 -231430638 + MIR SINE MIR 43 146 -62 323 316 22 7 chr1 11233938 11234077 -231430276 + L2 LINE L2 2251 2391 -923 244 293 79 65 chr1 11234295 11234510 -231429843 + L2 LINE L2 2486 2703 -611 252 294 93 60 chr1 11234608 11235026 -231429327 + L2 LINE L2 2844 3275 -38 2311 95 3 0 chr1 11235421 11235716 -231428637 - AluSx SINE Alu -16 296 1 2611 71 0 0 chr1 11235825 11236136 -231428217 + AluY SINE Alu 1 311 0 1485 189 53 47 chr1 11236456 11236816 -231427537 + MLT1A2 LTR MaLR 1 362 -12 181 286 156 13 chr1 11236820 11236897 -231427456 - MIR SINE MIR -154 108 21 410 312 153 29 chr1 11236906 11237428 -231426925 + L2 LINE L2 2169 2755 -559 473 253 156 0 chr1 11237541 11237695 -231426658 + MER5B DNA MER1_type 1 178 0 312 290 90 41 chr1 11237792 11237937 -231426416 + L2 LINE L2 3121 3272 0 2270 40 98 0 chr1 11238135 11238409 -231425944 - AluY SINE Alu -10 301 1 855 293 89 14 chr1 11238946 11239315 -231425038 + L2 LINE L2 2914 3310 -3 281 224 15 0 chr1 11239702 11239769 -231424584 - L2 LINE L2 -346 2967 2900 1356 266 180 21 chr1 11239828 11240674 -231423679 - L2 LINE L2 -575 2739 1760 351 362 7 7 chr1 11241261 11241402 -231422951 + MIR3 SINE MIR 18 158 -50 544 319 14 47 chr1 11241421 11241668 -231422685 - MIR SINE MIR -9 253 11 517 299 0 0 chr1 11241816 11241950 -231422403 - MER5B DNA MER1_type 0 178 45 382 227 52 10 chr1 11241981 11242078 -231422275 + MER5A DNA MER1_type 6 106 -83 283 316 70 51 chr1 11242455 11242613 -231421740 - MIR SINE MIR -71 191 31 216 330 52 0 chr1 11242956 11243053 -231421300 - MIR3 SINE MIR -23 185 84 370 297 55 0 chr1 11243194 11243322 -231421031 + L2 LINE L2 3138 3272 0 946 241 55 14 chr1 11244901 11245121 -231419232 - MIR SINE MIR -1 261 33 226 330 39 0 chr1 11245140 11245243 -231419110 + MER103 DNA DNA 48 154 -12 206 180 20 60 chr1 11245728 11245778 -231418575 + L2 LINE L2 3202 3249 -23 613 262 144 33 chr1 11245945 11246508 -231417845 + L2 LINE L2 1179 3281 -32 243 0 0 0 chr1 11246528 11246555 -231417798 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2536 67 0 3 chr1 11247158 11247457 -231416896 - AluSq SINE Alu -15 298 1 263 250 201 25 chr1 11248778 11248898 -231415455 - MER5A DNA MER1_type -14 175 24 1932 171 13 0 chr1 11249846 11250145 -231414208 - AluJo SINE Alu -9 303 1 230 299 66 29 chr1 11250586 11250723 -231413630 - MER117 DNA MER1_type -8 189 48 834 211 41 6 chr1 11251183 11251354 -231412999 + MIR SINE MIR 36 212 -50 321 300 54 46 chr1 11251987 11252117 -231412236 - MIR SINE MIR -79 183 53 744 259 59 39 chr1 11252120 11252406 -231411947 - L2 LINE L2 -5 3308 3017 1032 151 161 5 chr1 11252697 11252896 -231411457 - MER30 DNA MER1_type 0 230 1 384 251 190 0 chr1 11253642 11253821 -231410532 + MIR SINE MIR 11 223 -39 286 242 156 41 chr1 11255521 11255701 -231408652 + MIR SINE MIR 28 241 -21 258 258 156 47 chr1 11256424 11256552 -231407801 - MER5B DNA MER1_type -19 159 18 384 306 0 9 chr1 11257150 11257261 -231407092 + L2 LINE L2 3185 3294 -19 196 268 169 0 chr1 11257500 11257571 -231406782 - L2 LINE L2 -4 3268 3186 305 274 20 39 chr1 11257638 11257740 -231406613 - MIR3 SINE MIR -27 181 82 35 0 0 0 chr1 11258953 11258988 -231405365 + AT_rich Low_complexity Low_complexity 1 35 0 2534 70 0 10 chr1 11260483 11260795 -231403558 + AluY SINE Alu 3 311 0 201 267 113 47 chr1 11263035 11263185 -231401168 - MIR3 SINE MIR -48 160 1 342 171 0 0 chr1 11265601 11265671 -231398682 + GA-rich Low_complexity Low_complexity 3 72 0 261 233 0 0 chr1 11267936 11268026 -231396327 + CT-rich Low_complexity Low_complexity 1 90 0 345 271 65 9 chr1 11268378 11268485 -231395868 - L2 LINE L2 0 3313 3201 2545 285 120 29 chr1 11268896 11270192 -231394161 - L2 LINE L2 -252 3061 1650 245 322 128 77 chr1 11270349 11270647 -231393706 - L2 LINE L2 -14 3258 2946 2531 41 30 3 chr1 11271629 11271924 -231392429 - AluY SINE Alu -8 303 1 375 279 30 24 chr1 11272667 11272832 -231391521 - L1ME3A LINE L1 -14 6156 5991 1767 181 10 10 chr1 11272879 11273189 -231391164 - AluJo SINE Alu -2 310 1 209 139 23 0 chr1 11273561 11273604 -231390749 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 2544 57 3 0 chr1 11274870 11275169 -231389184 - AluY SINE Alu -11 300 1 990 227 23 9 chr1 11276552 11276768 -231387585 - MER20 DNA MER1_type 0 219 1 192 252 211 32 chr1 11277065 11277188 -231387165 - MIR3 SINE MIR -23 185 41 270 357 0 10 chr1 11277837 11277935 -231386418 - MIR SINE MIR -64 144 48 2310 100 0 13 chr1 11277935 11278236 -231386117 + AluSq SINE Alu 1 297 -16 2495 58 0 19 chr1 11278236 11278544 -231385809 + AluY SINE Alu 1 302 -9 1608 165 13 53 chr1 11278621 11278924 -231385429 - AluJo SINE Alu -20 292 2 1736 149 26 46 chr1 11279013 11279315 -231385038 + AluJo SINE Alu 1 296 -16 2288 97 0 3 chr1 11280854 11281154 -231383199 + AluSg SINE Alu 1 299 -11 215 273 91 30 chr1 11284413 11284512 -231379841 + MIR SINE MIR 146 250 -12 476 297 87 10 chr1 11285854 11286049 -231378304 - MIR SINE MIR -32 230 21 21 0 0 0 chr1 11287435 11287456 -231376897 + AT_rich Low_complexity Low_complexity 1 21 0 2347 82 3 13 chr1 11288153 11288457 -231375896 - AluSx SINE Alu -11 301 1 198 0 0 0 chr1 11288818 11288840 -231375513 + (A)n Simple_repeat Simple_repeat 1 22 0 374 226 59 20 chr1 11289680 11289782 -231374571 + MIR SINE MIR 81 186 -76 2391 64 0 38 chr1 11290336 11290649 -231373704 - AluY SINE Alu -10 301 1 682 180 0 0 chr1 11290705 11290816 -231373537 + FLAM_A SINE Alu 20 130 -12 258 317 15 0 chr1 11292128 11292196 -231372157 + MIR SINE MIR 43 110 -105 386 279 180 20 chr1 11292519 11292763 -231371590 + L2 LINE L2 3025 3307 -6 246 268 21 120 chr1 11293696 11293838 -231370515 - MIR SINE MIR -64 198 71 21 0 0 0 chr1 11294114 11294135 -231370218 + AT_rich Low_complexity Low_complexity 1 21 0 304 117 67 33 chr1 11294434 11294494 -231369859 - L2 LINE L2 -2 3311 3250 406 218 23 11 chr1 11294548 11294635 -231369718 + L2 LINE L2 3185 3272 0 222 174 0 0 chr1 11294637 11294683 -231369670 + G-rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 11295072 11295093 -231369260 + AT_rich Low_complexity Low_complexity 1 21 0 198 91 0 0 chr1 11296210 11296243 -231368110 + (A)n Simple_repeat Simple_repeat 1 33 0 37 99 0 0 chr1 11297004 11297125 -231367228 + GC_rich Low_complexity Low_complexity 1 121 0 24 67 0 0 chr1 11297308 11297353 -231367000 + GC_rich Low_complexity Low_complexity 1 45 0 27 87 0 0 chr1 11297368 11297437 -231366916 + GC_rich Low_complexity Low_complexity 1 69 0 812 197 129 28 chr1 11298120 11298823 -231365530 + L1MD3 LINE L1 7024 7885 -110 195 42 0 0 chr1 11298825 11298849 -231365504 + (T)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr1 11298988 11299023 -231365330 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr1 11299146 11299171 -231365182 + AT_rich Low_complexity Low_complexity 1 25 0 1767 177 0 16 chr1 11299765 11300117 -231364236 + AluJb SINE Alu 4 312 0 33 0 0 0 chr1 11300393 11300426 -231363927 + AT_rich Low_complexity Low_complexity 1 33 0 720 282 160 62 chr1 11300674 11300896 -231363457 + L2 LINE L2 2642 2841 -472 2308 94 3 3 chr1 11300896 11301193 -231363160 + AluSg SINE Alu 1 297 -13 720 282 160 62 chr1 11301193 11301567 -231362786 + L2 LINE L2 2841 3312 -1 679 268 82 39 chr1 11301921 11302152 -231362201 - MIR SINE MIR -18 244 4 810 210 84 88 chr1 11302164 11302426 -231361927 - MIR SINE MIR 0 262 2 2463 78 0 3 chr1 11303192 11303501 -231360852 - AluY SINE Alu -3 308 1 1682 185 7 3 chr1 11304119 11304417 -231359936 + AluJb SINE Alu 3 301 -11 405 0 0 0 chr1 11304853 11304898 -231359455 + (CA)n Simple_repeat Simple_repeat 2 46 0 348 301 141 0 chr1 11305862 11306018 -231358335 - MIR SINE MIR -37 225 48 228 289 53 0 chr1 11306074 11306150 -231358203 - MIR SINE MIR -7 255 176 453 282 63 57 chr1 11306753 11307069 -231357284 + L1ME LINE L1 5502 5819 -302 2394 77 0 6 chr1 11307271 11307583 -231356770 + AluY SINE Alu 1 310 -1 185 349 0 0 chr1 11308753 11308816 -231355537 + L2 LINE L2 3251 3313 0 1543 184 61 0 chr1 11309124 11309417 -231354936 - MER58B DNA MER1_type 0 341 31 951 237 39 93 chr1 11309837 11310197 -231354156 + L1ME4a LINE L1 5467 5786 -335 1881 128 25 50 chr1 11310197 11310517 -231353836 + AluJb SINE Alu 1 312 0 951 237 39 93 chr1 11310517 11310822 -231353531 + L1ME4a LINE L1 5786 6106 -15 1330 176 9 9 chr1 11310839 11311072 -231353281 + L1MC1 LINE L1 6100 6332 -1 273 300 138 8 chr1 11312937 11313067 -231351286 - MIR SINE MIR -73 189 43 236 293 35 0 chr1 11314543 11314601 -231349752 + MIR SINE MIR 89 148 -60 191 270 111 0 chr1 11315008 11315071 -231349282 - L2 LINE L2 -2 3270 3201 261 75 0 0 chr1 11315265 11315305 -231349048 + (TG)n Simple_repeat Simple_repeat 2 41 0 185 327 69 44 chr1 11317406 11317565 -231346788 - MIR SINE MIR -13 249 87 281 304 76 19 chr1 11318237 11318395 -231345958 + L2 LINE L2 3095 3261 -52 2227 82 29 0 chr1 11319069 11319348 -231345005 + AluSx SINE Alu 6 292 -20 195 254 36 0 chr1 11320088 11320143 -231344210 - L2 LINE L2 -2 3270 3214 330 158 53 0 chr1 11320349 11320425 -231343928 - MIR SINE MIR -10 252 173 610 279 135 9 chr1 11320430 11320659 -231343694 - MIR SINE MIR 0 262 5 301 289 78 0 chr1 11320669 11320759 -231343594 - MIR SINE MIR -154 108 12 894 198 104 5 chr1 11320784 11320986 -231343367 + Charlie1 DNA MER1_type 20 241 -2520 485 269 17 0 chr1 11320991 11321110 -231343243 + L1MD3 LINE L1 7804 7924 -71 2233 107 0 0 chr1 11321114 11321405 -231342948 + AluSx SINE Alu 1 291 -21 288 221 19 29 chr1 11321429 11321533 -231342820 + Charlie1 DNA MER1_type 2592 2694 -67 2121 77 8 0 chr1 11321861 11322121 -231342232 + AluSc SINE Alu 36 297 -12 339 275 166 13 chr1 11323337 11323566 -231340787 - L2 LINE L2 -198 3115 2852 202 396 45 9 chr1 11324422 11324533 -231339820 - L2 LINE L2 -632 2682 2568 739 243 53 5 chr1 11324588 11324794 -231339559 - MIR SINE MIR 0 262 47 25 65 0 0 chr1 11325183 11325229 -231339124 + AT_rich Low_complexity Low_complexity 1 46 0 1055 278 46 9 chr1 11325414 11325741 -231338612 + L1ME2 LINE L1 5816 6154 -10 461 293 0 14 chr1 11325856 11325996 -231338357 + MIR SINE MIR 125 262 0 205 250 186 19 chr1 11326073 11326229 -231338124 + L2 LINE L2 2708 2889 -425 207 286 42 67 chr1 11327093 11327212 -231337141 + L2 LINE L2 2648 2763 -551 547 275 55 59 chr1 11327251 11327487 -231336866 + L2 LINE L2 2871 3105 -208 1992 122 7 0 chr1 11327983 11328277 -231336076 - AluSx SINE Alu -16 296 1 229 289 0 19 chr1 11330245 11330297 -231334056 + MIR SINE MIR 22 72 -190 604 278 0 40 chr1 11330673 11330849 -231333504 - MER58B DNA MER1_type -1 340 172 4964 240 27 13 chr1 11331045 11332396 -231331957 + L1P LINE L1 3880 5248 -898 279 347 0 0 chr1 11332477 11332624 -231331729 + C-rich Low_complexity Low_complexity 1 147 0 222 261 254 63 chr1 11333306 11333448 -231330905 + MIR3 SINE MIR 33 201 -7 1885 179 18 34 chr1 11333465 11333845 -231330508 + MLT1A2 LTR MaLR 1 374 0 34 0 0 0 chr1 11333859 11333893 -231330460 + AT_rich Low_complexity Low_complexity 1 34 0 575 320 148 21 chr1 11334471 11334992 -231329361 - L2 LINE L2 -559 2755 2169 1417 189 53 47 chr1 11335082 11335442 -231328911 - MLT1A2 LTR MaLR -12 362 1 2222 76 6 31 chr1 11335765 11336082 -231328271 - AluSc SINE Alu 0 309 1 261 251 91 37 chr1 11336312 11336437 -231327916 - MIR3 SINE MIR -22 186 52 448 294 48 0 chr1 11387078 11387204 -231277149 - MIR SINE MIR -12 250 119 726 222 0 26 chr1 11390328 11390481 -231273872 - AluSc SINE Alu -17 292 144 1446 200 3 52 chr1 11390556 11390744 -231273609 - AluJb SINE Alu -13 299 130 1858 153 0 39 chr1 11390744 11391051 -231273302 + AluSx SINE Alu 1 295 -17 1446 200 3 52 chr1 11391051 11391172 -231273181 - AluJb SINE Alu -182 130 5 1542 193 10 24 chr1 11391747 11392043 -231272310 + AluSx SINE Alu 5 296 -16 2807 206 59 5 chr1 11392413 11392985 -231271368 + LTR26 LTR ERV1 1 603 0 2846 209 60 2 chr1 11393254 11393824 -231270529 + LTR26 LTR ERV1 1 603 0 465 230 8 8 chr1 11393962 11394088 -231270265 + MER65A LTR ERV1 215 340 -105 931 197 160 17 chr1 11394308 11394602 -231269751 + LTR44 LTR ERV1 1 336 -183 328 100 0 0 chr1 11394690 11394740 -231269613 + Alu SINE Alu 249 298 -2 1946 161 3 10 chr1 11394740 11395051 -231269302 + AluSc SINE Alu 1 309 0 1966 149 3 3 chr1 11395419 11395737 -231268616 - AluSc SINE Alu 0 318 1 21 0 0 0 chr1 11395815 11395836 -231268517 + AT_rich Low_complexity Low_complexity 1 21 0 2088 142 3 0 chr1 11395839 11396142 -231268211 - AluSq SINE Alu -9 304 1 1812 155 7 17 chr1 11397165 11397302 -231267051 + AluSx SINE Alu 1 138 -174 2189 84 0 0 chr1 11397302 11397575 -231266778 + AluY SINE Alu 35 307 -4 1812 155 7 17 chr1 11397575 11397733 -231266620 + AluSx SINE Alu 138 293 -19 2024 140 13 3 chr1 11401002 11401309 -231263044 + AluSg SINE Alu 1 310 0 1386 214 0 37 chr1 11401313 11401657 -231262696 + AluJb SINE Alu 1 333 0 723 195 8 0 chr1 11401738 11401861 -231262492 + FLAM_C SINE Alu 2 125 -18 1465 197 14 10 chr1 11401945 11402234 -231262119 + AluSx SINE Alu 5 294 -18 12131 100 15 8 chr1 11402587 11405314 -231259039 + L1PA7 LINE L1 3384 6134 -20 2343 99 0 10 chr1 11405472 11405776 -231258577 - AluY SINE Alu -10 301 1 1090 173 50 117 chr1 11405778 11406033 -231258320 + MER82 DNA MER2_type 22 250 -403 839 154 23 0 chr1 11406033 11406163 -231258190 - FLAM_C SINE Alu 0 133 1 1090 173 50 117 chr1 11406163 11406248 -231258105 + MER82 DNA MER2_type 250 339 -314 2216 110 7 10 chr1 11406263 11406571 -231257782 - AluSg1 SINE Alu -1 308 2 342 316 45 65 chr1 11406875 11406948 -231257405 - L2 LINE L2 0 3272 3199 1943 158 0 3 chr1 11406948 11407245 -231257108 + AluSx SINE Alu 1 296 -16 2315 110 0 7 chr1 11407245 11407554 -231256799 + AluSx SINE Alu 1 308 -4 342 316 45 65 chr1 11407554 11407634 -231256719 - L2 LINE L2 -71 3201 3121 577 115 0 0 chr1 11407658 11407736 -231256617 + AluSq/x SINE Alu 49 126 -186 413 169 12 0 chr1 11407737 11407820 -231256533 + AluS SINE Alu 228 311 0 2401 100 3 0 chr1 11407879 11408189 -231256164 - AluSp SINE Alu -2 311 1 2218 106 7 3 chr1 11408201 11408502 -231255851 - AluSx SINE Alu -10 302 1 685 219 19 32 chr1 11408545 11408700 -231255653 + MIR SINE MIR 89 241 -21 1034 187 0 0 chr1 11408744 11408910 -231255443 - AluJb SINE Alu -17 295 130 1936 81 0 4 chr1 11409686 11409921 -231254432 - AluY SINE Alu -77 234 1 2207 121 0 3 chr1 11409922 11410228 -231254125 - AluSq SINE Alu -8 305 1 2171 71 49 0 chr1 11410239 11410506 -231253847 - AluY SINE Alu -11 300 21 1475 243 136 21 chr1 11410557 11411043 -231253310 + MLT1F LTR MaLR 1 542 0 2440 62 0 3 chr1 11411099 11411388 -231252965 + AluY SINE Alu 7 294 -17 1389 137 12 32 chr1 11411391 11411639 -231252714 - MLT2B3 LTR ERVL -311 243 1 398 257 126 14 chr1 11411655 11411869 -231252484 - L2 LINE L2 -232 3081 2844 191 326 53 0 chr1 11412244 11412339 -231252014 - L2 LINE L2 -23 3290 3191 2222 108 10 0 chr1 11412893 11413189 -231251164 + AluSx SINE Alu 1 299 -13 208 275 62 0 chr1 11413855 11413935 -231250418 - MIR SINE MIR -119 143 59 1133 121 24 0 chr1 11415004 11415169 -231249184 - AluY SINE Alu 0 311 143 270 268 21 0 chr1 11415299 11415396 -231248957 + (TA)n Simple_repeat Simple_repeat 2 100 0 2241 98 3 3 chr1 11415466 11415761 -231248592 + AluY SINE Alu 2 296 -15 748 131 0 0 chr1 11415766 11415873 -231248480 + U6 snRNA snRNA 1 107 0 4794 92 8 3 chr1 11415873 11416536 -231247817 + L1PA7 LINE L1 5483 6148 -6 2376 212 117 9 chr1 11416685 11417335 -231247018 - L1MC1 LINE L1 -13 6320 5601 276 184 161 11 chr1 11417380 11417467 -231246886 + L2 LINE L2 3163 3262 -10 998 262 61 22 chr1 11418275 11418634 -231245719 - MER49 LTR ERV1 -1 922 550 503 161 0 113 chr1 11418632 11418724 -231245629 + MER4E LTR ERV1 38 139 -640 * 2076 133 3 0 chr1 11418724 11419010 -231245343 + AluSp SINE Alu 1 287 -26 266 65 0 22 chr1 11419013 11419059 -231245294 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 503 161 0 113 chr1 11419059 11419086 -231245267 + MER4E LTR ERV1 141 147 -632 22 35 0 0 chr1 11421567 11421596 -231242757 + AT_rich Low_complexity Low_complexity 1 29 0 605 231 0 0 chr1 11421601 11421718 -231242635 - FLAM_C SINE Alu -24 119 3 261 0 0 0 chr1 11422125 11422154 -231242199 + (A)n Simple_repeat Simple_repeat 1 29 0 1375 186 8 0 chr1 11422166 11422414 -231241939 - AluSx SINE Alu -45 267 18 1749 270 130 10 chr1 11423092 11423894 -231240459 + MER52A LTR ERV1 56 1104 -174 1462 260 17 6 chr1 11423895 11424253 -231240100 + MER52A LTR ERV1 1392 1753 -2 624 252 19 8 chr1 11424253 11424533 -231239820 + L1M1 LINE L1 3442 3724 -3841 720 248 0 12 chr1 11424533 11424694 -231239659 + AluJb SINE Alu 153 311 -1 225 279 13 63 chr1 11424782 11424861 -231239492 + L2 LINE L2 3219 3293 -20 849 72 0 72 chr1 11424864 11425024 -231239329 - AluSp/q SINE Alu 0 313 186 919 170 23 18 chr1 11428185 11428356 -231235997 - AluSx SINE Alu -15 295 124 1727 49 22 4 chr1 11428356 11428581 -231235772 - L1PA4 LINE L1 -4 6151 5923 340 64 0 0 chr1 11428581 11428628 -231235725 + L1PA4 LINE L1 5885 5931 -223 972 141 0 0 chr1 11428628 11428763 -231235590 - AluSx SINE Alu -177 135 1 1497 114 9 5 chr1 11428936 11429147 -231235206 - AluSq SINE Alu -101 212 1 1847 123 4 14 chr1 11429266 11429542 -231234811 - AluSx SINE Alu -39 273 1 346 115 0 0 chr1 11429551 11429603 -231234750 - Alu SINE Alu -249 53 2 291 276 104 15 chr1 11429935 11430069 -231234284 - MIR SINE MIR 0 262 117 1518 170 51 20 chr1 11430810 11431104 -231233249 + AluJo SINE Alu 1 303 -9 1714 166 7 33 chr1 11431104 11431405 -231232948 + AluSp SINE Alu 1 294 -19 2053 156 0 0 chr1 11432655 11432962 -231231391 + AluSx SINE Alu 1 307 -5 1194 125 0 0 chr1 11433445 11433605 -231230748 + AluSx SINE Alu 1 160 -152 182 230 27 81 chr1 11434283 11434357 -231229996 + L2 LINE L2 3202 3271 -1 2450 48 10 7 chr1 11435912 11436207 -231228146 + AluY SINE Alu 1 296 -15 2094 129 3 3 chr1 11436322 11436631 -231227722 + AluSx SINE Alu 1 309 -3 1401 240 0 7 chr1 11436766 11437074 -231227279 + AluJb SINE Alu 1 306 -6 1311 220 10 45 chr1 11437159 11437294 -231227059 + AluJo SINE Alu 1 139 -163 2059 147 3 13 chr1 11437294 11437430 -231226923 + AluSx SINE Alu 1 137 -175 2522 60 0 0 chr1 11437430 11437732 -231226621 + AluY SINE Alu 1 302 -9 2059 147 3 13 chr1 11437732 11437907 -231226446 + AluSx SINE Alu 137 309 -3 1311 220 10 45 chr1 11437907 11438084 -231226269 + AluJo SINE Alu 139 302 0 2386 105 0 0 chr1 11438133 11438437 -231225916 + AluSg SINE Alu 1 304 -6 1088 149 0 0 chr1 11438750 11438911 -231225442 - AluSp SINE Alu -15 298 138 2292 103 0 3 chr1 11439470 11439770 -231224583 + AluSc SINE Alu 1 299 -10 2252 85 7 0 chr1 11439784 11440065 -231224288 + AluY SINE Alu 1 283 -28 207 0 0 0 chr1 11440068 11440091 -231224262 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2254 110 7 0 chr1 11440121 11440422 -231223931 + AluSg SINE Alu 1 303 -7 664 228 36 30 chr1 11440430 11440597 -231223756 + AluSg/x SINE Alu 142 309 -3 195 42 0 0 chr1 11440813 11440837 -231223516 + (GGCTG)n Simple_repeat Simple_repeat 2 25 0 631 211 91 24 chr1 11440914 11441123 -231223230 + MER65A LTR ERV1 211 433 -12 2062 150 6 10 chr1 11441282 11441595 -231222758 + AluSx SINE Alu 1 312 0 1449 181 70 7 chr1 11441595 11442049 -231222304 + LTR44 LTR ERV1 7 519 0 1626 191 11 0 chr1 11442091 11442388 -231221965 + AluJb SINE Alu 7 306 0 1749 115 4 0 chr1 11442388 11442623 -231221730 + AluSp SINE Alu 1 236 -77 183 42 0 0 chr1 11442728 11442752 -231221601 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 846 151 0 8 chr1 11442754 11442880 -231221473 - FRAM SINE Alu -18 158 34 1720 156 3 62 chr1 11443049 11443370 -231220983 + AluJb SINE Alu 11 312 0 2035 148 3 0 chr1 11443452 11443749 -231220604 + AluSx SINE Alu 1 298 -14 1982 144 11 0 chr1 11443831 11444116 -231220237 - AluSx SINE Alu -24 288 1 647 265 86 97 chr1 11444370 11444543 -231219810 - LTR1B LTR ERV1 -302 524 351 2196 89 0 59 chr1 11444543 11444867 -231219486 + AluSx SINE Alu 2 306 -6 647 265 86 97 chr1 11444867 11445180 -231219173 - LTR1B LTR ERV1 -475 351 43 1428 121 43 0 chr1 11445207 11445414 -231218939 + AluSc SINE Alu 88 303 -6 1879 225 45 73 chr1 11445415 11446083 -231218270 + MER72-int LTR ERV1 6110 6758 0 1148 163 19 54 chr1 11446084 11446097 -231218256 + MER72 LTR ERV1 1 13 -709 2436 75 3 7 chr1 11446097 11446402 -231217951 + AluSg1 SINE Alu 1 304 -5 1148 163 19 54 chr1 11446402 11446646 -231217707 + MER72 LTR ERV1 13 249 -473 285 168 53 116 chr1 11446627 11446677 -231217676 + MER72 LTR ERV1 608 651 -71 * 2189 101 17 0 chr1 11446677 11446973 -231217380 - AluSx SINE Alu -11 301 1 285 168 53 116 chr1 11446973 11447017 -231217336 + MER72 LTR ERV1 651 696 -26 4384 137 31 53 chr1 11447117 11447319 -231217034 - MER4E LTR ERV1 0 779 574 2407 110 0 0 chr1 11447319 11447629 -231216724 + AluSx SINE Alu 2 311 -1 4384 137 31 53 chr1 11447629 11447640 -231216713 - MER4E LTR ERV1 -205 574 564 2037 146 0 19 chr1 11447640 11447956 -231216397 + AluSx SINE Alu 1 310 -2 4384 137 31 53 chr1 11447956 11448537 -231215816 - MER4E LTR ERV1 -215 564 1 2098 128 3 3 chr1 11448705 11449010 -231215343 + AluSx SINE Alu 1 305 -7 350 198 76 58 chr1 11449010 11449182 -231215171 + L1M4 LINE L1 3818 3992 -2154 2285 113 3 13 chr1 11449923 11450234 -231214119 - AluSg SINE Alu -2 308 1 1213 142 6 0 chr1 11450280 11450463 -231213890 - AluSx SINE Alu -8 302 119 2237 115 7 0 chr1 11450498 11450802 -231213551 - AluSg SINE Alu -4 306 1 880 149 0 15 chr1 11450806 11450940 -231213413 - AluSx SINE Alu -181 132 1 1507 148 13 4 chr1 11450951 11451187 -231213166 - AluSg/x SINE Alu -9 303 66 295 203 0 0 chr1 11451187 11451251 -231213102 - AluSc SINE Alu -76 223 160 422 212 258 23 chr1 11451253 11451385 -231212968 + AluJb SINE Alu 8 170 -142 2037 140 20 0 chr1 11451480 11451773 -231212580 + AluSx SINE Alu 1 299 -13 1473 197 14 10 chr1 11451862 11452151 -231212202 - AluSx SINE Alu -18 294 5 647 239 49 0 chr1 11452216 11452358 -231211995 - AluJo SINE Alu -162 150 2 1396 220 0 35 chr1 11452439 11452753 -231211600 - AluJb SINE Alu -9 303 1 1996 139 14 3 chr1 11452764 11453059 -231211294 - AluSg SINE Alu -12 298 1 1332 140 8 47 chr1 11456334 11456569 -231207784 - AluSg/x SINE Alu -2 310 85 777 76 0 3 chr1 11456569 11456734 -231207619 - AluY SINE Alu -62 249 35 918 131 0 7 chr1 11456734 11456871 -231207482 - AluSq/x SINE Alu -176 136 1 263 295 19 0 chr1 11457810 11457915 -231206438 + L1M3f LINE L1 543 649 -4679 639 234 0 0 chr1 11457916 11458023 -231206330 - FLAM_C SINE Alu -34 109 3 11104 38 6 56 chr1 11458037 11459440 -231204913 - SVA Other Other 0 1386 53 243 0 0 0 chr1 11459440 11459467 -231204886 + (GGGAGA)n Simple_repeat Simple_repeat 3 29 0 3655 171 15 59 chr1 11459488 11459537 -231204816 - L1MA4 LINE L1 -6 6294 6244 198 0 0 0 chr1 11459537 11459559 -231204794 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 2077 131 0 0 chr1 11459561 11459844 -231204509 - AluSx SINE Alu -29 283 1 3655 171 15 59 chr1 11459844 11460092 -231204261 - L1MA4 LINE L1 -57 6243 5986 2434 87 3 10 chr1 11460092 11460401 -231203952 - AluY SINE Alu 0 311 5 3655 171 15 59 chr1 11460401 11460732 -231203621 - L1MA4 LINE L1 -314 5986 5706 2184 134 3 3 chr1 11460732 11461045 -231203308 + AluSq SINE Alu 1 313 0 3655 171 15 59 chr1 11461045 11461261 -231203092 - L1MA4 LINE L1 -594 5706 5482 812 203 0 0 chr1 11461268 11461401 -231202952 - FLAM_C SINE Alu 0 133 1 1654 202 7 3 chr1 11461597 11461904 -231202449 - AluJo SINE Alu -4 308 1 1031 121 0 0 chr1 11462120 11462252 -231202101 + AluSq/x SINE Alu 1 132 -180 2259 115 3 0 chr1 11462252 11462556 -231201797 + AluSg SINE Alu 1 305 -5 2210 116 10 0 chr1 11462894 11463204 -231201149 - AluSp SINE Alu 0 313 1 2228 120 0 19 chr1 11463765 11464116 -231200237 + AluSq SINE Alu 1 313 0 2034 137 3 3 chr1 11464171 11464464 -231199889 + AluSc SINE Alu 1 293 -16 482 105 0 20 chr1 11464783 11465051 -231199302 - AluSc SINE Alu -2 307 2 2373 80 7 3 chr1 11465051 11465352 -231199001 - AluSg SINE Alu -8 302 1 2325 95 3 0 chr1 11465610 11465904 -231198449 - AluSg SINE Alu -14 296 2 2115 112 0 11 chr1 11465915 11466236 -231198117 - AluSx SINE Alu 0 318 1 289 301 61 89 chr1 11466452 11466698 -231197655 + L2 LINE L2 1552 1790 -1524 1985 146 27 0 chr1 11466701 11466995 -231197358 + AluJb SINE Alu 1 302 -10 1691 138 43 0 chr1 11467274 11467527 -231196826 + AluSq SINE Alu 1 264 -49 185 227 68 0 chr1 11468267 11468311 -231196042 - L2 LINE L2 -5 3308 3262 1587 168 67 18 chr1 11468585 11468870 -231195483 + AluSg SINE Alu 1 299 -11 1787 166 0 17 chr1 11469955 11470311 -231194042 - AluSx SINE Alu 0 312 1 1488 151 0 5 chr1 11470622 11470840 -231193513 - AluSq SINE Alu -96 217 1 2658 194 27 5 chr1 11470840 11471393 -231192960 - L1MA4 LINE L1 -50 6250 5686 775 126 0 0 chr1 11471393 11471496 -231192857 + AluSq/x SINE Alu 1 103 -210 879 218 5 9 chr1 11471496 11471716 -231192637 - L1MA4 LINE L1 -609 5691 5473 2172 133 3 9 chr1 11471904 11472219 -231192134 - AluSp SINE Alu 0 313 1 2097 142 3 0 chr1 11472762 11473065 -231191288 + AluSq SINE Alu 1 304 -9 25 0 0 0 chr1 11473068 11473093 -231191260 + AT_rich Low_complexity Low_complexity 1 25 0 2023 145 0 3 chr1 11473171 11473486 -231190867 + AluSc SINE Alu 1 314 0 1778 161 10 26 chr1 11473835 11474140 -231190213 - AluSc SINE Alu -1 308 9 259 176 0 0 chr1 11474152 11474203 -231190150 - Alu SINE Alu -1 301 251 819 212 164 17 chr1 11474291 11474584 -231189769 - LTR44 LTR ERV1 -183 336 1 460 246 8 8 chr1 11474804 11474934 -231189419 - MER65A LTR ERV1 -105 340 211 2972 198 60 2 chr1 11475067 11475637 -231188716 - LTR26 LTR ERV1 0 603 1 1791 163 14 0 chr1 11476007 11476295 -231188058 - AluSx SINE Alu -16 296 5 1256 202 112 11 chr1 11476875 11476996 -231187357 + AluJb SINE Alu 5 112 -200 1746 162 0 40 chr1 11476996 11477292 -231187061 - AluSx SINE Alu -22 290 7 1256 202 112 11 chr1 11477292 11477437 -231186916 + AluJb SINE Alu 112 298 -14 775 214 0 19 chr1 11477512 11477666 -231186687 + AluSg/x SINE Alu 146 296 -16 1692 186 4 0 chr1 11478090 11478364 -231185989 - AluSx SINE Alu -37 275 1 1419 195 11 35 chr1 11478481 11478768 -231185585 + AluJb SINE Alu 1 280 -32 525 188 31 6 chr1 11478768 11478928 -231185425 + GA-rich Low_complexity Low_complexity 2 165 0 1816 130 70 0 chr1 11479926 11480211 -231184142 + AluSx SINE Alu 1 305 -7 766 174 22 7 chr1 11481273 11481411 -231182942 + FLAM_C SINE Alu 3 142 -1 1952 153 0 3 chr1 11481424 11481718 -231182635 - AluSx SINE Alu -19 293 1 1605 157 0 49 chr1 11482201 11482525 -231181828 - AluSx SINE Alu -4 308 1 1633 166 13 36 chr1 11483787 11484088 -231180265 - AluSp SINE Alu -19 294 1 1539 185 48 7 chr1 11484088 11484379 -231179974 - AluJo SINE Alu -8 304 1 393 241 80 15 chr1 11485120 11485257 -231179096 + MIR SINE MIR 117 262 0 1975 138 0 3 chr1 11485584 11485889 -231178464 + AluSp SINE Alu 1 304 -9 1579 128 43 4 chr1 11485900 11486157 -231178196 + AluSg SINE Alu 1 267 -43 1960 117 0 3 chr1 11486278 11486561 -231177792 + AluSg SINE Alu 1 282 -28 1581 183 0 28 chr1 11486730 11487069 -231177284 - AluJb SINE Alu 0 331 1 1701 172 7 3 chr1 11487074 11487250 -231177103 - AluSx SINE Alu -9 303 124 225 0 0 0 chr1 11487250 11487275 -231177078 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1701 172 7 3 chr1 11487275 11487400 -231176953 - AluSx SINE Alu -188 124 1 2474 221 104 19 chr1 11487401 11488067 -231176286 - L1MC1 LINE L1 -11 6322 5601 196 293 67 40 chr1 11488119 11488194 -231176159 + L2 LINE L2 3169 3245 -27 820 191 7 0 chr1 11488369 11488505 -231175848 + AluSq/x SINE Alu 6 142 -170 1220 0 0 53 chr1 11488511 11488701 -231175652 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5215 72 25 53 chr1 11488701 11489523 -231174830 + SVA Other Other 68 866 -520 729 21 32 0 chr1 11489652 11489747 -231174606 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 305 98 0 20 chr1 11489766 11489817 -231174536 + (GGGAA)n Simple_repeat Simple_repeat 5 54 0 1384 265 44 38 chr1 11489940 11490137 -231174216 + MER41E LTR ERV1 13 207 -305 1998 122 3 0 chr1 11490137 11490464 -231173889 + AluSp SINE Alu 1 328 0 1384 265 44 38 chr1 11490464 11490739 -231173614 + MER41E LTR ERV1 207 490 -22 226 326 56 0 chr1 11490796 11490885 -231173468 + Charlie8 DNA MER1_type 127 220 -2197 2695 236 12 64 chr1 11490893 11491830 -231172523 - L1 LINE L1 -1297 6268 5381 942 247 11 0 chr1 11491894 11492232 -231172121 - L1 LINE L1 -3780 3785 3441 4199 240 38 33 chr1 11492235 11493861 -231170492 - MER52A LTR ERV1 -6 1749 61 1335 237 0 0 chr1 11494570 11494857 -231169496 + AluSx SINE Alu 19 305 -7 440 210 17 42 chr1 11495242 11495361 -231168992 + FLAM_C SINE Alu 1 116 -17 21 71 0 0 chr1 11495369 11495411 -231168942 + AT_rich Low_complexity Low_complexity 1 42 0 630 181 0 2 chr1 11498705 11498943 -231165410 + AluSx SINE Alu 3 292 -17 735 237 0 0 chr1 11498962 11499131 -231165222 + AluSx SINE Alu 127 295 -15 1838 139 3 0 chr1 11499207 11499494 -231164859 + AluSq SINE Alu 1 288 -25 26 0 0 0 chr1 11499792 11499818 -231164535 + AT_rich Low_complexity Low_complexity 1 26 0 1359 179 7 52 chr1 11500860 11501168 -231163185 - AluSx SINE Alu -14 298 5 1687 167 17 0 chr1 11501748 11502042 -231162311 + AluY SINE Alu 3 301 -10 1336 71 0 16 chr1 11502058 11502367 -231161986 + (GAAA)n Simple_repeat Simple_repeat 1 303 0 803 260 0 10 chr1 11502368 11502564 -231161789 + AluJb SINE Alu 16 209 -103 863 229 37 0 chr1 11504549 11504767 -231159586 + AluSg/x SINE Alu 85 310 -2 1848 164 0 0 chr1 11505296 11505600 -231158753 + AluSc SINE Alu 1 304 -5 3545 202 24 48 chr1 11505770 11506744 -231157609 + LTR5 LTR ERVK 6 955 -14 32587 188 29 29 chr1 11506756 11514280 -231150073 + HERVK LTR ERVK 1 7392 -25 3398 190 22 58 chr1 11514289 11515228 -231149125 + LTR5 LTR ERVK 1 906 -63 979 199 31 49 chr1 11515513 11515799 -231148554 + LTR5 LTR ERVK 675 955 -14 2287 159 36 5 chr1 11515826 11516216 -231148137 + LTR57 LTR ERVL 3 404 -7 288 305 55 8 chr1 11516919 11517047 -231147306 + MIR SINE MIR 117 250 -12 3264 177 11 36 chr1 11517105 11517421 -231146932 + MER49 LTR ERV1 1 294 -629 2156 108 0 0 chr1 11517421 11517718 -231146635 - AluSg SINE Alu -13 297 1 3264 177 11 36 chr1 11517718 11518038 -231146315 + MER49 LTR ERV1 294 621 -302 404 230 0 104 chr1 11518050 11518185 -231146168 + AluSq/x SINE Alu 10 130 -173 762 93 0 0 chr1 11521560 11521668 -231142685 + (GGGA)n Simple_repeat Simple_repeat 1 108 0 187 345 43 9 chr1 11522293 11522409 -231141944 - MIR SINE MIR -80 182 63 1025 271 61 17 chr1 11524332 11524694 -231139659 - Tigger6 DNA MER2_type -12 1585 1208 283 339 199 0 chr1 11526050 11526221 -231138132 - MIR SINE MIR 0 262 58 387 138 0 0 chr1 11526472 11526530 -231137823 + AluSc SINE Alu 232 289 -10 239 254 17 0 chr1 11526535 11526594 -231137759 - MER94 DNA DNA -62 72 13 1954 53 0 0 chr1 11526676 11526920 -231137433 - L1PA4 LINE L1 0 6155 5912 40766 48 1 21 chr1 11526927 11529506 -231134847 - L1PA4 LINE L1 -1097 5049 2549 336 171 0 40 chr1 11529506 11529582 -231134771 + LTR30 LTR ERV1 552 624 -98 40766 48 1 21 chr1 11529582 11532069 -231132284 - L1PA4 LINE L1 -3597 2549 13 1909 122 30 3 chr1 11532603 11532898 -231131455 - AluSx SINE Alu -8 304 2 261 229 4 74 chr1 11533260 11533333 -231131020 + LTR45 LTR ERV1 327 404 -88 1990 121 0 66 chr1 11533333 11533512 -231130841 - AluSg SINE Alu 0 310 162 9943 48 58 14 chr1 11533512 11534855 -231129498 - SVA Other Other 0 1386 1 1990 121 0 66 chr1 11534855 11535007 -231129346 - AluSg SINE Alu -148 162 1 261 229 4 74 chr1 11535007 11535025 -231129328 + LTR45 LTR ERV1 404 412 -80 1778 175 0 0 chr1 11535025 11535317 -231129036 - AluSg SINE Alu -18 292 1 261 229 4 74 chr1 11535317 11535331 -231129022 + LTR45 LTR ERV1 412 425 -67 25 31 0 0 chr1 11536300 11536332 -231128021 + AT_rich Low_complexity Low_complexity 1 32 0 1463 170 88 137 chr1 11536370 11536916 -231127437 - LTR44 LTR ERV1 0 519 1 764 197 82 19 chr1 11537064 11537272 -231127081 - MER65A LTR ERV1 -14 431 211 3010 198 45 2 chr1 11537410 11537986 -231126367 - LTR26 LTR ERV1 -2 601 1 1617 172 7 0 chr1 11538358 11538648 -231125705 - AluSx SINE Alu -20 292 1 1275 190 0 117 chr1 11539224 11539362 -231124991 + AluJb SINE Alu 5 85 -217 1698 160 0 4 chr1 11539362 11539643 -231124710 - AluSx SINE Alu -32 280 1 1275 190 0 117 chr1 11539643 11539830 -231124523 + AluJb SINE Alu 85 292 -10 809 183 0 0 chr1 11539910 11540047 -231124306 + AluSg/x SINE Alu 138 274 -36 1567 166 4 0 chr1 11540517 11540776 -231123577 - AluSx SINE Alu -52 260 1 800 141 0 63 chr1 11540906 11541048 -231123305 + AluJo SINE Alu 14 146 -166 184 227 68 0 chr1 11542686 11542730 -231121623 - L2 LINE L2 -5 3308 3262 1448 168 67 18 chr1 11543004 11543289 -231121064 + AluSg SINE Alu 1 299 -11 1646 166 0 17 chr1 11544374 11544730 -231119623 - AluSx SINE Alu 0 312 1 1364 156 0 5 chr1 11545041 11545259 -231119094 - AluSq SINE Alu -96 217 1 2771 192 29 5 chr1 11545259 11545811 -231118542 - L1MA4 LINE L1 -50 6250 5686 759 126 0 0 chr1 11545811 11545914 -231118439 + AluSq/x SINE Alu 1 103 -209 946 222 0 9 chr1 11545914 11546135 -231118218 - L1MA4 LINE L1 -609 5691 5473 1954 143 3 9 chr1 11546323 11546638 -231117715 - AluSp SINE Alu 0 313 1 1998 124 3 0 chr1 11547181 11547535 -231116818 + AluSq SINE Alu 1 355 0 1853 148 0 3 chr1 11547590 11547905 -231116448 + AluSc SINE Alu 1 314 0 1766 142 3 11 chr1 11548257 11548576 -231115777 - AluSc SINE Alu 0 317 1 293 157 0 0 chr1 11548577 11548628 -231115725 - Alu SINE Alu -1 301 251 969 191 164 17 chr1 11548716 11549009 -231115344 - LTR44 LTR ERV1 -183 336 1 513 239 8 8 chr1 11549229 11549359 -231114994 - MER65A LTR ERV1 -105 340 211 2896 200 60 2 chr1 11549492 11550062 -231114291 - LTR26 LTR ERV1 0 603 1 1685 142 17 3 chr1 11550432 11550720 -231113633 - AluSx SINE Alu -16 296 5 23 0 0 0 chr1 11551180 11551203 -231113150 + AT_rich Low_complexity Low_complexity 1 23 0 1269 199 112 11 chr1 11551304 11551425 -231112928 + AluJb SINE Alu 5 112 -190 1640 162 0 37 chr1 11551425 11551722 -231112631 - AluSx SINE Alu -20 292 7 1269 199 112 11 chr1 11551722 11551867 -231112486 + AluJb SINE Alu 112 298 -4 782 183 0 0 chr1 11551942 11552073 -231112280 + AluSg/x SINE Alu 144 274 -36 1553 177 0 0 chr1 11552534 11552794 -231111559 - AluSx SINE Alu -52 260 1 1294 199 7 31 chr1 11552911 11553198 -231111155 + AluJb SINE Alu 1 280 -32 504 194 31 6 chr1 11553198 11553358 -231110995 + GA-rich Low_complexity Low_complexity 2 165 0 1603 139 71 0 chr1 11554356 11554636 -231109717 + AluSx SINE Alu 1 300 -12 737 180 22 7 chr1 11555697 11555836 -231108517 + FLAM_C SINE Alu 2 142 -1 1800 153 0 3 chr1 11555849 11556143 -231108210 - AluSx SINE Alu -19 293 1 1865 161 0 0 chr1 11556629 11556933 -231107420 - AluSx SINE Alu -8 304 1 1620 162 7 33 chr1 11558193 11558495 -231105858 - AluSp SINE Alu -19 294 1 1345 192 48 7 chr1 11558495 11558785 -231105568 - AluJo SINE Alu -9 303 1 379 248 78 16 chr1 11559526 11559655 -231104698 + MIR SINE MIR 117 253 -9 1887 141 3 3 chr1 11559990 11560289 -231104064 + AluSp SINE Alu 1 299 -14 1656 117 43 4 chr1 11560305 11560562 -231103791 + AluSg SINE Alu 1 267 -43 1917 120 0 3 chr1 11560683 11560966 -231103387 + AluSg SINE Alu 1 282 -28 1625 176 0 28 chr1 11561135 11561458 -231102895 - AluJb SINE Alu 0 315 1 1609 176 0 50 chr1 11561463 11561782 -231102571 - AluSx SINE Alu -9 303 1 2487 218 104 19 chr1 11561783 11562449 -231101904 - L1MC1 LINE L1 -11 6322 5601 196 293 67 40 chr1 11562501 11562576 -231101777 + L2 LINE L2 3169 3245 -27 833 194 7 0 chr1 11562749 11562888 -231101465 + AluSq/x SINE Alu 3 142 -170 22034 77 1 0 chr1 11562893 11565725 -231098628 + L1PA7 LINE L1 8 2840 -3306 1560 58 0 0 chr1 11565721 11565911 -231098442 - L1PA4 LINE L1 -172 5983 5794 * 1070 70 0 0 chr1 11565911 11566045 -231098308 + L1PA4 LINE L1 6013 6155 0 * 18564 84 17 14 chr1 11566043 11569531 -231094822 + L1PA7 LINE L1 2827 6319 0 1353 50 0 11 chr1 11569349 11569699 -231094654 + (GAAA)n Simple_repeat Simple_repeat 1 348 0 327 130 0 0 chr1 11569711 11569765 -231094588 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 1334 271 44 34 chr1 11569887 11570084 -231094269 + MER41E LTR ERV1 13 206 -306 1953 126 3 0 chr1 11570084 11570401 -231093952 + AluSp SINE Alu 1 318 0 1334 271 44 34 chr1 11570401 11570674 -231093679 + MER41E LTR ERV1 206 490 -22 2646 240 13 63 chr1 11570828 11571763 -231092590 - L1 LINE L1 -1297 6268 5381 919 251 11 0 chr1 11571827 11572165 -231092188 - L1 LINE L1 -3780 3785 3441 5692 230 29 72 chr1 11572168 11573803 -231090550 - MER52A LTR ERV1 -6 1749 51 1219 254 0 0 chr1 11574503 11574790 -231089563 + AluSx SINE Alu 19 305 -7 375 175 88 14 chr1 11575174 11575265 -231089088 + AluJ/FLAM SINE Alu 1 62 -240 21 71 0 0 chr1 11575273 11575315 -231089038 + AT_rich Low_complexity Low_complexity 1 42 0 592 184 0 6 chr1 11578692 11578931 -231085422 + AluSx SINE Alu 3 292 -17 723 249 0 0 chr1 11578945 11579118 -231085235 + AluSx SINE Alu 122 294 -16 1784 154 3 0 chr1 11579194 11579486 -231084867 + AluSq SINE Alu 1 293 -20 21 0 0 0 chr1 11579804 11579825 -231084528 + AT_rich Low_complexity Low_complexity 1 21 0 1646 156 4 4 chr1 11580878 11581154 -231083199 - AluSx SINE Alu -26 286 11 792 253 0 15 chr1 11581414 11581616 -231082737 + AluJb SINE Alu 15 213 -99 473 295 90 35 chr1 11581898 11581959 -231082394 + L1M4 LINE L1 3729 3785 -2361 2134 119 3 0 chr1 11581959 11582270 -231082083 + AluSp SINE Alu 1 312 -1 473 295 90 35 chr1 11582270 11582531 -231081822 + L1M4 LINE L1 3785 4087 -2059 559 284 72 68 chr1 11582574 11582639 -231081714 + MIR SINE MIR 12 75 -187 1636 66 5 0 chr1 11582639 11582850 -231081503 + AluY SINE Alu 82 293 -18 559 284 72 68 chr1 11582850 11583034 -231081319 + MIR SINE MIR 75 262 0 1589 141 6 73 chr1 11583146 11583459 -231080894 + AluSx SINE Alu 1 292 -20 242 237 17 0 chr1 11583463 11583522 -231080831 - MER94 DNA DNA -62 72 13 1811 113 33 4 chr1 11583954 11584228 -231080125 - AluSx SINE Alu -28 284 3 321 242 12 127 chr1 11584575 11584654 -231079699 + LTR45B LTR ERV1 328 414 -75 2037 124 7 0 chr1 11584654 11584961 -231079392 - AluSg SINE Alu -1 309 1 321 242 12 127 chr1 11584961 11584978 -231079375 + LTR45B LTR ERV1 414 431 -58 1763 163 3 0 chr1 11584978 11585273 -231079080 - AluSg SINE Alu -14 296 1 321 242 12 127 chr1 11585273 11585340 -231079013 + LTR45B LTR ERV1 431 473 -16 1705 143 4 0 chr1 11585999 11586265 -231078088 - AluSp SINE Alu -44 269 3 454 262 91 11 chr1 11586595 11586782 -231077571 - MER65A LTR ERV1 -33 412 211 2952 186 58 7 chr1 11586917 11587491 -231076862 - LTR26 LTR ERV1 0 603 1 1710 170 14 0 chr1 11587859 11588147 -231076206 - AluSx SINE Alu -20 292 1 5591 19 5 1 chr1 11590138 11590917 -231073436 - L1PA3 LINE L1 -250 5905 5124 401 179 26 0 chr1 11590917 11590995 -231073358 - LTR44 LTR ERV1 -115 404 325 1108 197 153 10 chr1 11591051 11591345 -231073008 - LTR44 LTR ERV1 -183 336 1 679 193 84 38 chr1 11591491 11591704 -231072649 - MER65A LTR ERV1 -12 433 211 2955 201 45 2 chr1 11591839 11592417 -231071936 - LTR26 LTR ERV1 0 603 1 1709 173 13 0 chr1 11592786 11593086 -231071267 - AluSx SINE Alu -8 304 1 1374 181 3 101 chr1 11593661 11593778 -231070575 + AluJb SINE Alu 9 136 -176 1654 171 0 21 chr1 11593778 11594064 -231070289 - AluSx SINE Alu -20 292 13 1374 181 3 101 chr1 11594064 11594282 -231070071 + AluJb SINE Alu 136 311 -1 858 194 0 0 chr1 11594369 11594513 -231069840 + AluSg/x SINE Alu 140 283 -29 1722 179 24 0 chr1 11594947 11595244 -231069109 - AluSx SINE Alu -8 304 1 803 147 0 63 chr1 11595369 11595512 -231068841 + AluJo SINE Alu 9 142 -170 1690 178 59 0 chr1 11597471 11597758 -231066595 + AluSg SINE Alu 6 309 -1 2461 19 0 0 chr1 11598719 11598988 -231065365 - AluYa5 SINE Alu 0 311 43 33 0 0 0 chr1 11599142 11599175 -231065178 + AT_rich Low_complexity Low_complexity 1 33 0 1651 195 3 3 chr1 11599175 11599483 -231064870 - AluSx SINE Alu -4 308 1 1491 141 0 0 chr1 11599798 11600011 -231064342 - AluSq SINE Alu -100 213 1 2797 188 29 7 chr1 11600011 11600565 -231063788 - L1MA4 LINE L1 -50 6250 5685 692 157 0 0 chr1 11600565 11600667 -231063686 + AluSq/x SINE Alu 2 103 -209 994 217 0 9 chr1 11600667 11600888 -231063465 - L1MA4 LINE L1 -609 5691 5473 2231 120 3 0 chr1 11601094 11601394 -231062959 - AluSp SINE Alu -12 301 1 1964 143 3 7 chr1 11601937 11602293 -231062060 + AluSq SINE Alu 1 355 0 2013 141 0 3 chr1 11602348 11602663 -231061690 + AluSc SINE Alu 1 314 0 1907 158 7 10 chr1 11603019 11603329 -231061024 - AluSc SINE Alu 0 309 1 344 115 0 0 chr1 11603329 11603381 -231060972 - Alu SINE Alu 0 301 250 994 187 160 17 chr1 11603469 11603763 -231060590 - LTR44 LTR ERV1 -183 336 1 518 239 8 8 chr1 11603983 11604113 -231060240 - MER65A LTR ERV1 -105 340 211 2780 211 60 2 chr1 11604246 11604816 -231059537 - LTR26 LTR ERV1 0 603 1 1701 162 10 24 chr1 11605185 11605481 -231058872 - AluSx SINE Alu -16 296 5 1426 184 13 61 chr1 11606058 11606179 -231058174 + AluJb SINE Alu 5 130 -182 1835 153 0 39 chr1 11606179 11606487 -231057866 - AluSx SINE Alu -16 296 1 1426 184 13 61 chr1 11606487 11606675 -231057678 + AluJb SINE Alu 130 299 -13 725 208 0 26 chr1 11606750 11606904 -231057449 + AluSc SINE Alu 144 293 -16 724 218 7 14 chr1 11607328 11607475 -231056878 - AluSg/x SINE Alu -37 275 130 1358 196 14 32 chr1 11607484 11607769 -231056584 + AluJb SINE Alu 1 280 -32 468 199 32 6 chr1 11607769 11607925 -231056428 + GA-rich Low_complexity Low_complexity 2 161 0 1761 132 71 0 chr1 11608922 11609203 -231055150 + AluSx SINE Alu 1 301 -11 691 188 22 7 chr1 11610264 11610402 -231053951 + FLAM_C SINE Alu 2 141 -2 1941 154 0 3 chr1 11610416 11610709 -231053644 - AluSx SINE Alu -20 292 1 1990 155 7 0 chr1 11611194 11611498 -231052855 - AluSx SINE Alu -6 306 1 1817 149 7 33 chr1 11612758 11613060 -231051293 - AluSq SINE Alu -19 294 1 1551 184 44 7 chr1 11613060 11613353 -231051000 - AluJo SINE Alu -7 305 1 321 256 78 16 chr1 11614094 11614223 -231050130 + MIR SINE MIR 117 253 -9 2163 120 0 3 chr1 11614558 11614857 -231049496 + AluSp SINE Alu 1 298 -15 1698 128 43 4 chr1 11614873 11615130 -231049223 + AluSg SINE Alu 1 267 -43 1988 127 0 3 chr1 11615252 11615535 -231048818 + AluSg SINE Alu 1 282 -28 1646 153 55 29 chr1 11615704 11616002 -231048351 - AluJb SINE Alu 0 305 1 1890 151 3 50 chr1 11616007 11616325 -231048028 - AluSx SINE Alu -9 303 1 1575 226 14 3 chr1 11616326 11616697 -231047656 - L1MC1 LINE L1 -11 6322 5948 916 201 189 15 chr1 11616714 11616978 -231047375 - L1MC1 LINE L1 -423 5910 5601 816 191 7 0 chr1 11617280 11617416 -231046937 + AluSx SINE Alu 6 142 -171 22316 73 0 2 chr1 11617421 11620259 -231044094 + L1PA4 LINE L1 8 2840 -3306 1553 58 0 0 chr1 11620255 11620445 -231043908 - L1PA4 LINE L1 -172 5983 5794 * 1077 70 0 0 chr1 11620445 11620579 -231043774 + L1PA4 LINE L1 6013 6155 0 * 20833 44 1 24 chr1 11620577 11623914 -231040439 + L1PA4 LINE L1 2827 6150 -5 1060 177 0 0 chr1 11623915 11624090 -231040263 + AluSx SINE Alu 133 307 -3 21 36 0 0 chr1 11625172 11625200 -231039153 + AT_rich Low_complexity Low_complexity 1 28 0 536 164 0 39 chr1 11627187 11627317 -231037036 + AluSp/q SINE Alu 188 313 0 1543 207 10 3 chr1 11627543 11627852 -231036501 - AluJb SINE Alu 0 312 2 1111 250 66 44 chr1 11627852 11627985 -231036368 - Tigger6 DNA MER2_type -66 1531 1402 1709 163 14 0 chr1 11627985 11628279 -231036074 + AluSx SINE Alu 3 300 -12 1111 250 66 44 chr1 11628279 11628553 -231035800 - Tigger6 DNA MER2_type -195 1402 1115 1073 186 24 20 chr1 11630857 11631104 -231033249 + L1MA7 LINE L1 6026 6273 -18 18962 99 3 15 chr1 11631402 11634946 -231029407 + L1PA7 LINE L1 2548 6136 -18 1187 107 4 16 chr1 11634946 11635180 -231029173 + (GAAA)n Simple_repeat Simple_repeat 4 228 0 294 164 0 0 chr1 11635183 11635238 -231029115 + GA-rich Low_complexity Low_complexity 1 55 0 1328 261 43 45 chr1 11635350 11635547 -231028806 + MER41E LTR ERV1 13 209 -303 2097 110 21 0 chr1 11635547 11635865 -231028488 + AluSp SINE Alu 1 324 0 1328 261 43 45 chr1 11635865 11636128 -231028225 + MER41E LTR ERV1 209 474 -38 3096 226 10 48 chr1 11636298 11637221 -231027132 - L1 LINE L1 -1297 6268 5381 944 252 18 3 chr1 11637285 11637625 -231026728 - L1 LINE L1 -3780 3785 3441 5649 230 33 68 chr1 11637628 11639263 -231025090 - MER52A LTR ERV1 -6 1749 51 1270 246 0 0 chr1 11639967 11640255 -231024098 + AluSx SINE Alu 18 305 -7 653 188 0 8 chr1 11640637 11640754 -231023599 + FLAM_C SINE Alu 1 116 -17 21 71 0 0 chr1 11640762 11640804 -231023549 + AT_rich Low_complexity Low_complexity 1 42 0 581 207 4 2 chr1 11644080 11644317 -231020036 + AluSx SINE Alu 3 295 -17 709 244 0 0 chr1 11644336 11644504 -231019849 + AluSx SINE Alu 127 294 -16 1792 147 3 0 chr1 11644577 11644869 -231019484 + AluSq SINE Alu 1 293 -20 26 0 0 0 chr1 11645178 11645204 -231019149 + AT_rich Low_complexity Low_complexity 1 26 0 1516 181 3 3 chr1 11646254 11646536 -231017817 - AluSx SINE Alu -26 286 5 1656 174 17 0 chr1 11647116 11647577 -231016776 + AluY SINE Alu 3 468 0 793 254 0 15 chr1 11647578 11647779 -231016574 + AluJb SINE Alu 16 213 -99 240 35 0 0 chr1 11648874 11648903 -231015450 + (TG)n Simple_repeat Simple_repeat 1 29 0 984 201 32 0 chr1 11649769 11649988 -231014365 + AluSg/x SINE Alu 85 310 -2 1573 172 45 0 chr1 11650517 11650814 -231013539 + AluSc SINE Alu 1 309 0 3392 207 35 53 chr1 11650969 11651955 -231012398 + LTR5 LTR ERVK 1 969 0 27152 159 28 32 chr1 11651957 11656790 -231007563 + HERVK LTR ERVK 3 4815 -2428 250 310 53 41 chr1 11657254 11657499 -231006854 - PABL_B-int LTR ERV1 -4280 2842 2595 239 333 54 16 chr1 11657995 11658124 -231006229 - MIR SINE MIR -12 250 117 317 306 105 39 chr1 11662767 11662996 -231001357 + L1M4 LINE L1 2808 3051 -3095 954 226 52 4 chr1 11664466 11664696 -230999657 + AluJb SINE Alu 44 284 -28 180 353 35 0 chr1 11665307 11665423 -230998930 - MIR SINE MIR -80 182 63 249 278 42 0 chr1 11667153 11667225 -230997128 - L2 LINE L2 -10 3262 3188 1033 243 72 15 chr1 11667291 11667625 -230996728 - Tigger6 DNA MER2_type -37 1560 1208 8103 161 25 70 chr1 11668770 11670131 -230994222 + L1MA4 LINE L1 3643 5063 -1237 2061 122 3 7 chr1 11670131 11670434 -230993919 + AluSc SINE Alu 1 302 -7 8103 161 25 70 chr1 11670434 11671659 -230992694 + L1MA4 LINE L1 5063 6082 -218 2346 69 6 28 chr1 11671659 11671977 -230992376 - AluY SINE Alu 0 311 1 8103 161 25 70 chr1 11671977 11672185 -230992168 + L1MA4 LINE L1 6082 6298 -2 783 200 16 32 chr1 11672230 11672420 -230991933 + MER5A DNA MER1_type 3 189 0 781 215 95 119 chr1 11672820 11673317 -230991036 + MLT1D LTR MaLR 21 505 0 721 94 219 16 chr1 11673563 11673691 -230990662 - MER30 DNA MER1_type 0 230 77 183 42 0 0 chr1 11673691 11673715 -230990638 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1348 154 5 0 chr1 11673716 11673937 -230990416 - AluSx SINE Alu -32 280 59 695 86 0 0 chr1 11674037 11674130 -230990223 - AluS SINE Alu -219 94 2 230 316 90 11 chr1 11674132 11674309 -230990044 + L1M4 LINE L1 3727 3917 -2229 551 303 100 26 chr1 11674481 11674712 -230989641 + MIR SINE MIR 15 262 0 1860 122 0 17 chr1 11674824 11675111 -230989242 + AluSx SINE Alu 1 282 -30 262 220 17 0 chr1 11675131 11675190 -230989163 - MER94 DNA DNA -62 72 13 204 235 0 0 chr1 11675391 11675442 -230988911 + (TA)n Simple_repeat Simple_repeat 1 51 0 295 332 57 42 chr1 11675636 11675829 -230988524 + MER110-int LTR ERV1 2243 2438 -2209 1840 112 42 0 chr1 11675841 11676126 -230988227 - AluSx SINE Alu -14 298 2 2074 123 3 0 chr1 11676568 11676868 -230987485 - AluSp SINE Alu -12 301 1 1709 157 94 135 chr1 11676972 11677513 -230986840 - LTR44 LTR ERV1 0 519 1 621 185 81 77 chr1 11677659 11677881 -230986472 - MER65A LTR ERV1 -12 433 211 3111 187 45 2 chr1 11678016 11678594 -230985759 - LTR26 LTR ERV1 0 603 1 365 64 0 0 chr1 11678794 11678841 -230985512 - AluSg SINE Alu -7 293 247 1390 102 0 0 chr1 11678841 11679028 -230985325 - AluSg SINE Alu -123 187 1 1769 135 28 3 chr1 11679211 11679377 -230984976 - AluSx SINE Alu -16 296 119 189 0 0 0 chr1 11679377 11679398 -230984955 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1769 135 28 3 chr1 11679398 11679520 -230984833 - AluSx SINE Alu -193 119 1 889 108 8 0 chr1 11679521 11679651 -230984702 - AluSq/x SINE Alu -177 136 6 1500 161 0 58 chr1 11680217 11680338 -230984015 + AluJb SINE Alu 5 132 -180 1944 118 0 20 chr1 11680338 11680635 -230983718 - AluSx SINE Alu -21 291 1 1500 161 0 58 chr1 11680635 11680804 -230983549 + AluJb SINE Alu 132 278 -34 453 142 41 123 chr1 11681024 11681152 -230983201 - MER65-int LTR ERV1 -4048 823 728 188 246 0 77 chr1 11681152 11681217 -230983136 - L3b LINE CR1 -105 1478 1419 348 0 0 55 chr1 11681503 11681558 -230982795 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1185 160 0 0 chr1 11681607 11681794 -230982559 - AluSx SINE Alu -125 187 1 790 197 0 0 chr1 11682257 11682394 -230981959 + AluSg/x SINE Alu 140 276 -36 1814 158 10 3 chr1 11682831 11683141 -230981212 - AluSx SINE Alu 0 312 1 1660 133 0 70 chr1 11683502 11683837 -230980516 - AluSg SINE Alu 0 314 1 1779 149 0 20 chr1 11683947 11684243 -230980110 - AluSx SINE Alu -22 290 1 1348 134 0 0 chr1 11684296 11684497 -230979856 - AluSg/x SINE Alu -30 282 82 2054 114 0 13 chr1 11684561 11684860 -230979493 - AluSx SINE Alu -17 295 1 1650 148 13 33 chr1 11684978 11685281 -230979072 + AluJb SINE Alu 1 297 -15 249 211 0 0 chr1 11685281 11685338 -230979015 + GA-rich Low_complexity Low_complexity 1 57 0 796 107 0 0 chr1 11686369 11686472 -230977881 + AluSx SINE Alu 2 104 -209 760 94 0 0 chr1 11686472 11686568 -230977785 - LTR12 LTR ERV1 -4 710 615 275 271 42 25 chr1 11686570 11686688 -230977665 - LTR30 LTR ERV1 -79 643 524 676 137 5 5 chr1 11686775 11686893 -230977460 - LTR12 LTR ERV1 -480 234 3 1460 96 0 0 chr1 11686894 11687093 -230977260 + AluSx SINE Alu 96 294 -18 2224 54 30 20 chr1 11687213 11687388 -230976965 - AluY SINE Alu -12 299 118 369 0 0 0 chr1 11687388 11687429 -230976924 + (TG)n Simple_repeat Simple_repeat 2 42 0 2224 54 30 20 chr1 11687429 11687549 -230976804 - AluY SINE Alu -193 118 1 579 199 23 23 chr1 11688481 11688612 -230975741 + FLAM_C SINE Alu 1 131 -2 2174 124 17 0 chr1 11688633 11688923 -230975430 - AluSq SINE Alu -18 295 1 1719 61 0 14 chr1 11688986 11689198 -230975155 - AluY SINE Alu -102 209 1 2246 120 7 0 chr1 11689682 11689983 -230974370 - AluSx SINE Alu -9 303 1 515 148 0 0 chr1 11690807 11690888 -230973465 - AluSg/x SINE Alu -50 262 182 2309 90 0 43 chr1 11690947 11691270 -230973083 + AluSc SINE Alu 1 309 0 335 256 78 16 chr1 11691526 11691655 -230972698 + MIR SINE MIR 117 253 -9 2410 82 3 0 chr1 11691697 11692000 -230972353 - AluSc SINE Alu -5 304 1 245 105 0 0 chr1 11692422 11692460 -230971893 + Alu SINE Alu 255 292 -7 1473 93 69 5 chr1 11692462 11692678 -230971675 + AluSx SINE Alu 1 230 -82 2314 108 16 0 chr1 11692834 11693141 -230971212 + AluSx SINE Alu 1 312 0 2545 198 74 26 chr1 11693159 11693372 -230970981 + L1MC1 LINE L1 5601 5802 -531 2413 104 0 0 chr1 11693372 11693679 -230970674 + AluSg1 SINE Alu 1 307 -2 2545 198 74 26 chr1 11693679 11694152 -230970201 + L1MC1 LINE L1 5802 6320 -13 2160 112 3 3 chr1 11694158 11694488 -230969865 + AluSq SINE Alu 1 330 0 2136 109 0 56 chr1 11694493 11694814 -230969539 + AluSx SINE Alu 1 303 -9 1860 147 7 4 chr1 11694821 11695123 -230969230 + AluJb SINE Alu 3 305 0 2265 105 20 0 chr1 11695594 11695900 -230968453 - AluSx SINE Alu 0 312 1 692 284 96 22 chr1 11695901 11696380 -230967973 - MER115 DNA AcHobo -137 556 2 278 300 42 110 chr1 11696670 11696933 -230967420 + MIR SINE MIR 14 258 -4 270 298 71 0 chr1 11697001 11697085 -230967268 + MIR SINE MIR 95 184 -78 429 252 39 96 chr1 11697135 11697195 -230967158 - L2 LINE L2 -1 3312 3250 2484 93 0 0 chr1 11697195 11697505 -230966848 - AluSg SINE Alu 0 310 1 429 252 39 96 chr1 11697505 11697674 -230966679 - L2 LINE L2 -63 3250 3096 2496 71 0 13 chr1 11698141 11698449 -230965904 - AluY SINE Alu -7 304 1 1280 178 53 41 chr1 11699124 11699536 -230964817 + MLT2B1 LTR ERVL 1 407 -7 444 328 48 0 chr1 11699589 11699775 -230964578 + L2 LINE L2 3106 3300 -13 1795 194 13 27 chr1 11700483 11700855 -230963498 - MLT1A2 LTR MaLR -7 367 1 2176 112 34 0 chr1 11701883 11702178 -230962175 - AluSx SINE Alu -7 305 1 1763 95 0 26 chr1 11702434 11702666 -230961687 + AluSg/x SINE Alu 67 292 -18 193 214 18 36 chr1 11702745 11702801 -230961552 - L2 LINE L2 -79 3234 3180 436 307 241 10 chr1 11702804 11703105 -230961248 - L2 LINE L2 0 3313 3083 1736 173 50 0 chr1 11703105 11703382 -230960971 + AluJo SINE Alu 1 291 -21 436 307 241 10 chr1 11703382 11703474 -230960879 - L2 LINE L2 -230 3083 2829 736 273 92 4 chr1 11703788 11704015 -230960338 - MIR SINE MIR 0 262 16 24 0 0 0 chr1 11704655 11704679 -230959674 + AT_rich Low_complexity Low_complexity 1 24 0 921 172 21 82 chr1 11705450 11705614 -230958739 - MER20 DNA MER1_type 0 219 72 2225 123 0 0 chr1 11705614 11705914 -230958439 + AluSq SINE Alu 3 302 -11 921 172 21 82 chr1 11705914 11705982 -230958371 - MER20 DNA MER1_type -147 72 1 693 146 0 46 chr1 11706035 11706071 -230958282 - FLAM_C SINE Alu -187 125 89 2094 115 58 11 chr1 11706071 11706419 -230957934 + THE1B LTR MaLR 1 364 0 693 146 0 46 chr1 11706419 11706512 -230957841 - FLAM_C SINE Alu -223 89 2 698 213 13 32 chr1 11706523 11706678 -230957675 + MLT1A2 LTR MaLR 1 152 -222 1086 126 75 13 chr1 11706698 11706857 -230957496 - AluSg/x SINE Alu -31 281 113 308 218 0 0 chr1 11706858 11706913 -230957440 - AluJ/monomer SINE Alu -244 55 1 2514 70 0 13 chr1 11706935 11707250 -230957103 - AluY SINE Alu 0 311 1 183 186 0 0 chr1 11707291 11707334 -230957019 + CT-rich Low_complexity Low_complexity 2 44 0 232 264 0 0 chr1 11707334 11707406 -230956947 + MLT1A2 LTR MaLR 194 265 -131 * 974 200 5 0 chr1 11707381 11707566 -230956787 + MLT1B LTR MaLR 205 390 0 198 191 0 0 chr1 11707691 11707738 -230956615 + GA-rich Low_complexity Low_complexity 3 49 0 1914 166 0 10 chr1 11707848 11708155 -230956198 + AluSx SINE Alu 1 304 -8 639 293 27 22 chr1 11708358 11708583 -230955770 - MIR SINE MIR -6 256 31 2290 92 9 28 chr1 11708685 11709002 -230955351 - AluSx SINE Alu -1 311 1 216 288 27 0 chr1 11709283 11709356 -230954997 + MIR SINE MIR 173 247 -15 288 137 0 0 chr1 11709471 11709522 -230954831 + (GGGGA)n Simple_repeat Simple_repeat 4 54 0 375 231 320 10 chr1 11709572 11709975 -230954378 + L2 LINE L2 2721 3262 -51 600 317 49 8 chr1 11710282 11710528 -230953825 - MIR SINE MIR -6 256 1 2413 93 3 0 chr1 11710549 11710851 -230953502 + AluSp SINE Alu 1 303 -10 2178 99 37 0 chr1 11710852 11711146 -230953207 + AluY SINE Alu 1 305 -6 1438 236 41 51 chr1 11711319 11711493 -230952860 - MLT1C LTR MaLR 0 467 293 1852 70 0 26 chr1 11711493 11711723 -230952630 - AluSg/x SINE Alu -16 294 71 1438 236 41 51 chr1 11711723 11712015 -230952338 - MLT1C LTR MaLR -174 293 6 2173 138 0 0 chr1 11712145 11712443 -230951910 - AluJb SINE Alu -9 303 6 501 277 0 8 chr1 11712655 11712785 -230951568 + LTR67 LTR ERVL 426 554 -3 408 20 0 0 chr1 11713580 11713629 -230950724 + (TG)n Simple_repeat Simple_repeat 2 50 0 550 229 185 15 chr1 11713685 11713832 -230950521 - L1ME4a LINE L1 -261 5860 5667 2278 103 0 10 chr1 11713832 11714133 -230950220 - AluSg SINE Alu -12 298 1 550 229 185 15 chr1 11714133 11714190 -230950163 - L1ME4a LINE L1 -454 5667 5621 436 317 30 6 chr1 11714205 11714372 -230949981 - L1ME4a LINE L1 -660 5504 5334 390 305 134 0 chr1 11714486 11714650 -230949703 + L1ME LINE L1 5630 5815 -306 392 182 159 102 chr1 11714941 11715117 -230949236 - MIR3 SINE MIR -3 205 20 2483 87 0 6 chr1 11715711 11716022 -230948331 - AluSx SINE Alu -3 309 1 262 339 9 0 chr1 11716061 11716170 -230948183 + (CCA)n Simple_repeat Simple_repeat 2 111 0 765 227 45 0 chr1 11716644 11716820 -230947533 + MER20 DNA MER1_type 1 184 -35 1338 141 5 18 chr1 11716890 11717110 -230947243 - AluJb SINE Alu -11 301 85 288 151 0 82 chr1 11717144 11717217 -230947136 + L1MB3 LINE L1 6084 6150 -33 2419 100 0 0 chr1 11717229 11717539 -230946814 - AluSx SINE Alu -2 310 1 1832 175 21 13 chr1 11717541 11717924 -230946429 - L1MB3 LINE L1 -42 6141 5756 2237 120 0 3 chr1 11717982 11718282 -230946071 + AluSx SINE Alu 1 299 -13 1502 193 179 24 chr1 11719033 11719346 -230945007 + MLT1D LTR MaLR 22 418 -87 2217 126 0 0 chr1 11719346 11719639 -230944714 + AluSg SINE Alu 1 293 -17 1502 193 179 24 chr1 11719639 11719744 -230944609 + MLT1D LTR MaLR 418 505 0 238 313 0 0 chr1 11719747 11719814 -230944539 - MIR SINE MIR -112 96 30 574 330 51 9 chr1 11719993 11720208 -230944145 - MIR SINE MIR -34 228 5 392 321 36 7 chr1 11720255 11720395 -230943958 + MIR3 SINE MIR 30 173 -35 766 303 88 14 chr1 11721209 11721506 -230942847 - L3 LINE CR1 -57 1520 1202 1785 146 7 28 chr1 11721747 11722035 -230942318 - AluJo SINE Alu -30 282 1 924 330 29 10 chr1 11722202 11722786 -230941567 - L2 LINE L2 0 3313 2712 216 244 98 12 chr1 11723063 11723145 -230941208 + MIR SINE MIR 47 135 -127 735 208 33 47 chr1 11723172 11723260 -230941093 + Charlie5 DNA MER1_type 2365 2453 -132 2093 99 54 7 chr1 11723260 11723554 -230940799 + AluSp SINE Alu 1 308 -5 735 208 33 47 chr1 11723554 11723677 -230940676 + Charlie5 DNA MER1_type 2453 2573 -12 228 35 0 0 chr1 11723797 11723826 -230940527 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2254 104 0 3 chr1 11723916 11724203 -230940150 + AluSg SINE Alu 1 286 -24 2063 187 53 29 chr1 11724317 11724661 -230939692 - MLT1C LTR MaLR -7 460 101 2346 105 0 7 chr1 11724661 11724965 -230939388 - AluSx SINE Alu -10 302 1 2063 187 53 29 chr1 11724965 11725069 -230939284 - MLT1C LTR MaLR -366 101 1 543 258 65 21 chr1 11725119 11725305 -230939048 - LTR33 LTR ERVL -7 514 321 3297 130 28 28 chr1 11725417 11725535 -230938818 + MER4A LTR ERV1 1 118 -482 2314 88 0 49 chr1 11725535 11725863 -230938490 + AluSx SINE Alu 1 312 0 3297 130 28 28 chr1 11725863 11726344 -230938009 + MER4A LTR ERV1 117 600 0 1120 224 22 44 chr1 11726401 11726718 -230937635 + L1MC2 LINE L1 5914 6223 -121 542 161 104 17 chr1 11726806 11726969 -230937384 + L1MC2 LINE L1 6191 7777 -8 1251 139 0 0 chr1 11726969 11727149 -230937204 - AluSg/x SINE Alu -6 306 127 1611 169 16 53 chr1 11727153 11727335 -230937018 - AluJo SINE Alu -5 307 141 207 0 0 0 chr1 11727335 11727358 -230936995 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1611 169 16 53 chr1 11727358 11727494 -230936859 - AluJo SINE Alu -171 141 1 2056 116 0 45 chr1 11727496 11727807 -230936546 - AluY SINE Alu -14 297 1 189 0 0 0 chr1 11727825 11727846 -230936507 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2247 74 7 7 chr1 11728811 11729135 -230935218 - AluSx SINE Alu 0 324 1 229 333 56 0 chr1 11729255 11729363 -230934990 - MIR SINE MIR -57 151 38 2057 123 0 7 chr1 11730006 11730283 -230934070 + AluSx SINE Alu 1 275 -37 339 88 0 44 chr1 11730293 11730361 -230933992 + (GGGGA)n Simple_repeat Simple_repeat 1 65 0 264 195 12 24 chr1 11730388 11730470 -230933883 + GA-rich Low_complexity Low_complexity 3 83 0 524 131 61 0 chr1 11730570 11730669 -230933684 + pTR5 LTR ERV1 1028 1132 -1306 * 760 171 55 61 chr1 11730667 11730831 -230933522 - pTR5 LTR ERV1 -1533 905 743 591 232 65 126 chr1 11730862 11731172 -230933181 - LTR16A1 LTR ERVL -106 351 61 2142 130 0 13 chr1 11731437 11731573 -230932780 + AluSq SINE Alu 1 137 -176 2322 98 0 7 chr1 11731573 11731869 -230932484 + AluSg1 SINE Alu 2 295 -14 2142 130 0 13 chr1 11731869 11732033 -230932320 + AluSq SINE Alu 137 297 -16 197 33 33 0 chr1 11732723 11732753 -230931600 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 316 67 22 0 chr1 11732755 11732800 -230931553 - AluSp/q SINE Alu -20 283 238 6140 122 139 59 chr1 11732803 11734302 -230930051 - pTR5 LTR ERV1 0 2438 745 423 202 0 39 chr1 11734309 11734413 -230929940 - AluSg/x SINE Alu -76 236 137 2279 119 5 31 chr1 11734441 11735006 -230929347 + MER51A LTR ERV1 1 634 0 308 227 0 109 chr1 11735721 11735849 -230928504 + L2 LINE L2 2946 3059 -254 239 263 50 12 chr1 11736004 11736084 -230928269 - MLT1G1 LTR MaLR -89 501 419 461 257 121 43 chr1 11736253 11736539 -230927814 - MLT1G1 LTR MaLR -274 275 1 2341 103 0 7 chr1 11736557 11736859 -230927494 + AluSx SINE Alu 1 300 -12 2297 103 3 25 chr1 11736870 11737189 -230927164 + AluSx SINE Alu 1 312 0 1882 180 73 47 chr1 11737355 11737720 -230926633 - LOR1b LTR ERV1 0 461 80 2228 106 33 0 chr1 11737720 11738023 -230926330 + AluSp SINE Alu 1 313 0 1882 180 73 47 chr1 11738023 11738106 -230926247 - LOR1b LTR ERV1 -381 80 1 203 146 122 0 chr1 11738154 11738195 -230926158 + MER91B DNA MER1_type 18 63 -127 340 271 0 0 chr1 11738483 11738553 -230925800 + MER58 DNA MER1_type 3 72 -143 1402 181 0 0 chr1 11738553 11738796 -230925557 + L1MA9 LINE L1 5884 6126 -186 1091 174 11 26 chr1 11738800 11738990 -230925363 + AluJo SINE Alu 1 187 -125 4160 97 181 131 chr1 11738996 11740290 -230924063 + pTR5 LTR ERV1 743 2438 0 1580 149 4 4 chr1 11740302 11740544 -230923809 + AluSx SINE Alu 64 305 -7 688 215 49 18 chr1 11740544 11740707 -230923646 + AluJo/FRAM SINE Alu 134 301 -11 433 246 94 31 chr1 11740751 11740942 -230923411 + L1MA10 LINE L1 6119 6321 -13 308 208 9 51 chr1 11740947 11741063 -230923290 + MER58 DNA MER1_type 98 2409 -11 2453 81 0 3 chr1 11741472 11741780 -230922573 + AluY SINE Alu 1 307 -4 1223 132 52 5 chr1 11741843 11742055 -230922298 - AluSg/x SINE Alu -21 291 70 399 41 0 0 chr1 11742193 11742242 -230922111 + (GGGGA)n Simple_repeat Simple_repeat 2 50 0 300 239 60 34 chr1 11742255 11742372 -230921981 + L1ME4a LINE L1 3073 3192 -2954 427 255 159 36 chr1 11743060 11743489 -230920864 - L2 LINE L2 -97 3216 2737 2494 87 0 3 chr1 11743938 11744249 -230920104 - AluSx SINE Alu -2 310 1 519 299 153 26 chr1 11744918 11745040 -230919313 + L1ME4a LINE L1 5379 5484 -637 2400 104 0 0 chr1 11745040 11745347 -230919006 + AluSx SINE Alu 1 307 -5 519 299 153 26 chr1 11745347 11745445 -230918908 + L1ME4a LINE L1 5484 5568 -553 2187 117 0 7 chr1 11745445 11745743 -230918610 + AluSx SINE Alu 3 298 -14 519 299 153 26 chr1 11745743 11746176 -230918177 + L1ME4a LINE L1 5568 6116 -5 205 397 32 0 chr1 11747206 11747332 -230917021 - MIR3 SINE MIR -6 202 73 462 229 22 89 chr1 11747361 11747540 -230916813 - MER5A DNA MER1_type -20 169 3 351 269 11 0 chr1 11747772 11747865 -230916488 + MIR SINE MIR 24 117 -91 725 256 121 0 chr1 11747898 11748105 -230916248 - MIR SINE MIR -10 252 21 404 262 70 58 chr1 11748166 11748338 -230916015 - MIR SINE MIR -10 252 79 275 357 62 27 chr1 11748694 11748883 -230915470 - MIR SINE MIR -56 206 20 * 429 244 72 23 chr1 11748879 11749028 -230915325 - MIR3 SINE MIR -37 171 16 30 77 0 0 chr1 11751047 11751112 -230913241 + GC_rich Low_complexity Low_complexity 1 65 0 240 278 29 23 chr1 11751141 11751314 -230913039 + (CGGGG)n Simple_repeat Simple_repeat 1 174 0 263 340 71 0 chr1 11751938 11752079 -230912274 + MIR SINE MIR 46 196 -66 250 272 65 33 chr1 11753188 11753280 -230911073 + MIR SINE MIR 24 118 -90 218 341 0 33 chr1 11753975 11754066 -230910287 - MIR3 SINE MIR -114 94 7 610 244 44 19 chr1 11755099 11755259 -230909094 + MIR SINE MIR 87 250 -12 440 313 76 20 chr1 11755877 11756075 -230908278 + L2 LINE L2 2550 2758 -556 1125 227 71 32 chr1 11756077 11756585 -230907768 + MLT1E LTR MaLR 2 593 0 347 342 68 47 chr1 11756617 11757044 -230907309 + L2 LINE L2 2804 3239 -74 1831 161 0 35 chr1 11757046 11757356 -230906997 - AluJb SINE Alu -8 304 6 563 324 34 10 chr1 11758057 11758261 -230906092 + MIR SINE MIR 17 225 -37 182 282 105 89 chr1 11758326 11758450 -230905903 - L2 LINE L2 -11 3261 3136 253 296 82 31 chr1 11758883 11758981 -230905372 + L2 LINE L2 3170 3272 0 1978 119 0 38 chr1 11760201 11760524 -230903829 + AluY SINE Alu 2 313 0 514 226 203 0 chr1 11760530 11760707 -230903646 - MIR SINE MIR -16 246 34 412 278 0 35 chr1 11760703 11760818 -230903535 - L2 LINE L2 -1 3312 3202 * 2112 154 0 0 chr1 11760895 11761206 -230903147 - AluSx SINE Alu -1 311 1 236 200 20 0 chr1 11761551 11761601 -230902752 - MLT1L LTR MaLR -562 53 3 2425 94 0 0 chr1 11762060 11762359 -230901994 + AluSg SINE Alu 3 301 -9 198 314 10 111 chr1 11762531 11762738 -230901615 - L2 LINE L2 -190 3082 2897 183 250 54 18 chr1 11762779 11762835 -230901518 - MIR SINE MIR -133 75 18 2375 57 47 3 chr1 11763240 11763538 -230900815 - AluY SINE Alu 0 311 1 504 326 68 28 chr1 11763608 11763933 -230900420 + L1PB1 LINE L1 5582 5919 -232 * 1535 235 52 10 chr1 11763653 11764057 -230900296 + L1ME1 LINE L1 5632 6052 -114 1920 153 0 45 chr1 11764064 11764378 -230899975 + AluJb SINE Alu 1 300 -12 2568 37 0 3 chr1 11764381 11764676 -230899677 + AluY SINE Alu 1 294 -17 330 296 78 9 chr1 11764681 11764796 -230899557 + L1ME4a LINE L1 5824 5946 -175 235 338 76 55 chr1 11765477 11765622 -230898731 + L2 LINE L2 3105 3252 -20 2093 106 29 0 chr1 11765631 11765944 -230898409 - AluSx SINE Alu 0 321 1 233 75 25 0 chr1 11766140 11766180 -230898173 + (TC)n Simple_repeat Simple_repeat 2 42 0 2472 78 3 10 chr1 11766374 11766682 -230897671 + AluSp SINE Alu 1 306 -7 2626 56 0 3 chr1 11767241 11767546 -230896807 + AluY SINE Alu 1 304 -7 2421 43 0 46 chr1 11767827 11768132 -230896221 + AluY SINE Alu 1 291 -20 778 138 15 0 chr1 11768481 11768611 -230895742 - FLAM_C SINE Alu -1 132 1 464 183 39 0 chr1 11768718 11768822 -230895531 - L1MB7 LINE L1 -303 5881 5774 1913 136 31 7 chr1 11769011 11769297 -230895056 + AluSg SINE Alu 11 303 -7 2305 125 0 3 chr1 11769456 11769767 -230894586 - AluSx SINE Alu -2 310 1 1969 222 121 56 chr1 11769871 11770435 -230893918 + MER63D DNA MER1_type 1 527 -534 2346 125 0 0 chr1 11770435 11770747 -230893606 - AluSx SINE Alu 0 312 1 1969 222 121 56 chr1 11770747 11770932 -230893421 + MER63D DNA MER1_type 527 699 -362 491 15 0 31 chr1 11770932 11770997 -230893356 + (CTATT)n Simple_repeat Simple_repeat 3 65 0 1969 222 121 56 chr1 11770997 11771107 -230893246 + MER63D DNA MER1_type 699 917 -144 2426 104 0 0 chr1 11771134 11771441 -230892912 - AluSx SINE Alu -5 307 1 2316 153 31 27 chr1 11771447 11771752 -230892601 - L1MB5 LINE L1 -37 6137 5828 1531 157 33 62 chr1 11771752 11772057 -230892296 - AluJo SINE Alu -16 296 1 2316 153 31 27 chr1 11772057 11772197 -230892156 - L1MB5 LINE L1 -346 5828 5690 717 182 42 0 chr1 11772197 11772340 -230892013 + MER63D DNA MER1_type 908 1056 -4 412 301 30 24 chr1 11772365 11772531 -230891822 + MIR3 SINE MIR 13 179 -29 696 232 49 22 chr1 11772687 11772911 -230891442 + MER31A LTR ERV1 256 485 0 1974 101 87 7 chr1 11773222 11773510 -230890843 - AluSx SINE Alu -1 311 1 278 71 24 0 chr1 11773534 11773576 -230890777 - MER21B LTR ERV1 -202 661 619 342 335 63 6 chr1 11774672 11774830 -230889523 - MIR SINE MIR -49 213 47 2585 84 0 0 chr1 11775276 11775587 -230888766 - AluSp SINE Alu 0 313 3 1075 83 0 0 chr1 11775591 11775723 -230888630 - AluSp SINE Alu -181 132 1 1634 232 71 63 chr1 11775763 11776198 -230888155 + MLT1F LTR MaLR 1 442 -100 2386 101 0 3 chr1 11776198 11776505 -230887848 - AluSq SINE Alu -7 306 1 1634 232 71 63 chr1 11776505 11776607 -230887746 + MLT1F LTR MaLR 442 542 0 305 224 0 0 chr1 11776830 11776888 -230887465 - MER91B DNA MER1_type -130 60 3 310 308 29 96 chr1 11777102 11777342 -230887011 + MIR SINE MIR 6 229 -33 573 225 0 9 chr1 11777351 11777462 -230886891 - FLAM_C SINE Alu -28 115 6 1904 152 3 19 chr1 11778304 11778620 -230885733 + AluJo SINE Alu 1 311 -1 243 319 97 19 chr1 11779053 11779269 -230885084 - L2 LINE L2 -129 3184 2952 374 229 52 0 chr1 11779270 11779366 -230884987 - MER45A DNA AcHobo -1 177 77 230 257 220 37 chr1 11779391 11779609 -230884744 - L2 LINE L2 -351 2963 2706 829 163 0 34 chr1 11779609 11779756 -230884597 - FLAM_C SINE Alu -1 142 1 2134 88 88 3 chr1 11779765 11780049 -230884304 - AluSq SINE Alu -5 308 1 2367 76 10 3 chr1 11780049 11780339 -230884014 - AluSc SINE Alu -17 292 1 181 333 11 11 chr1 11780342 11780435 -230883918 - L2 LINE L2 -601 2713 2621 2206 123 0 13 chr1 11781801 11782103 -230882250 - AluSq SINE Alu -15 298 1 537 260 32 26 chr1 11782295 11782449 -230881904 - MIR SINE MIR -56 206 52 2392 99 0 0 chr1 11782570 11782874 -230881479 - AluY SINE Alu -6 305 2 1331 245 136 21 chr1 11782925 11783411 -230880942 - MLT1F LTR MaLR 0 542 1 2114 49 53 0 chr1 11783462 11783739 -230880614 + AluY SINE Alu 21 310 0 677 280 52 13 chr1 11784249 11784481 -230879872 - MIR SINE MIR -15 247 7 1952 70 117 0 chr1 11784797 11785080 -230879273 + AluSp SINE Alu 1 313 0 2478 80 0 3 chr1 11785561 11785862 -230878491 + AluSg SINE Alu 1 300 -10 1199 227 127 30 chr1 11786067 11786428 -230877925 - MSTD LTR MaLR 0 396 1 1998 172 0 0 chr1 11786832 11787129 -230877224 - AluJo SINE Alu -15 297 1 393 303 0 0 chr1 11787133 11787222 -230877131 + L1MC4 LINE L1 6615 6703 -1339 658 188 161 61 chr1 11787259 11787520 -230876833 + MER113 DNA MER1_type? 119 405 -116 707 234 84 92 chr1 11787840 11788362 -230875991 + L1M4 LINE L1 563 1080 -5039 294 117 78 78 chr1 11788395 11788472 -230875881 + MIR SINE MIR 183 259 -3 628 289 52 102 chr1 11788536 11788879 -230875474 + L1M4 LINE L1 3272 3597 -2532 242 216 0 68 chr1 11788908 11788924 -230875429 + L1M4 LINE L1 4252 4268 -1861 1100 201 142 15 chr1 11788924 11789192 -230875161 + AluJb SINE Alu 1 302 0 237 269 0 0 chr1 11789140 11789207 -230875146 + AluJo SINE Alu 85 151 -151 * 242 216 0 68 chr1 11789192 11789218 -230875135 + L1M4 LINE L1 4268 4294 -1835 1793 139 0 12 chr1 11789218 11789470 -230874883 + AluSg SINE Alu 46 294 -16 242 216 0 68 chr1 11789470 11789514 -230874839 + L1M4 LINE L1 4294 4333 -1796 882 300 63 31 chr1 11789543 11789617 -230874736 + L1M4 LINE L1 4716 4786 -1375 2341 60 0 30 chr1 11789617 11789918 -230874435 + AluY SINE Alu 2 293 -18 882 300 63 31 chr1 11789918 11790556 -230873797 + L1M4 LINE L1 4786 5446 -715 293 231 264 33 chr1 11790559 11790680 -230873673 + MIR SINE MIR 4 152 -110 764 186 9 95 chr1 11790894 11791002 -230873351 - Charlie2 DNA MER1_type 0 2862 2783 2087 91 3 10 chr1 11791002 11791299 -230873054 + AluSg SINE Alu 1 295 -15 764 186 9 95 chr1 11791299 11791421 -230872932 - Charlie2 DNA MER1_type -79 2783 2652 2228 85 0 3 chr1 11791487 11791781 -230872572 - AluSg SINE Alu -17 293 1 247 250 0 0 chr1 11791785 11791849 -230872504 - Charlie2 DNA MER1_type -377 2485 2422 2320 83 0 3 chr1 11792237 11792550 -230871803 + AluSp SINE Alu 1 312 -1 2140 110 7 0 chr1 11794209 11794519 -230869834 + AluSp SINE Alu 1 312 -1 555 317 77 5 chr1 11794532 11794753 -230869600 + MIR SINE MIR 26 262 0 985 214 96 102 chr1 11794905 11794941 -230869412 - Charlie2 DNA MER1_type -473 2389 2354 2280 84 3 0 chr1 11794941 11795237 -230869116 - AluSp SINE Alu -16 297 1 985 214 96 102 chr1 11795237 11795760 -230868593 - Charlie2 DNA MER1_type -508 2354 1833 401 181 181 29 chr1 11795762 11795841 -230868512 - Tigger7 DNA MER2_type 0 2587 2487 2024 144 26 15 chr1 11795841 11795908 -230868445 - MER2 DNA MER2_type 0 344 279 1609 154 24 14 chr1 11795908 11796200 -230868153 + AluSx SINE Alu 1 295 -17 2024 144 26 15 chr1 11796200 11796471 -230867882 - MER2 DNA MER2_type -65 279 2 401 181 181 29 chr1 11796471 11796496 -230867857 - Tigger7 DNA MER2_type -100 2487 2467 441 125 0 12 chr1 11796513 11796592 -230867761 - Tigger7 DNA MER2_type -77 2410 2333 1695 166 181 55 chr1 11796592 11797079 -230867274 + LTR10A LTR ERV1 1 548 -61 1048 204 43 132 chr1 11797088 11797439 -230866914 + LTR10A-int LTR ERV1 1 317 -6335 387 238 117 0 chr1 11797445 11797589 -230866764 + LTR10A-int LTR ERV1 288 792 -7420 846 163 111 62 chr1 11797782 11798170 -230866183 + LTR7 LTR ERV1 1 450 0 8129 197 37 35 chr1 11798170 11801049 -230863304 + HERVH LTR ERV1 1 2830 -3792 4284 130 5 88 chr1 11801049 11801854 -230862499 + HERVH LTR ERV1 3357 4094 -3619 * 12186 95 5 1 chr1 11801843 11803483 -230860870 + HERVH LTR ERV1 4370 6016 -1697 3340 120 14 42 chr1 11803476 11804049 -230860304 + HERVH LTR ERV1 7157 7713 0 * 1298 168 207 44 chr1 11804049 11804436 -230859917 + LTR7 LTR ERV1 1 450 0 212 186 17 0 chr1 11804685 11804744 -230859609 + GA-rich Low_complexity Low_complexity 2 61 0 308 184 39 0 chr1 11804778 11804881 -230859472 + GA-rich Low_complexity Low_complexity 2 108 0 5611 96 18 41 chr1 11804881 11805314 -230859039 + HERV17 LTR ERV1 704 1145 -5751 2272 69 0 3 chr1 11805314 11805603 -230858750 + AluY SINE Alu 1 288 -23 5611 96 18 41 chr1 11805603 11806248 -230858105 + HERV17 LTR ERV1 1145 1718 -5178 267 274 167 0 chr1 11806248 11806332 -230858021 - LTR8 LTR ERV1 -434 257 160 11824 156 12 20 chr1 11806339 11809514 -230854839 + Harlequin LTR ERV1 1804 6647 -2 1843 142 127 43 chr1 11809558 11809975 -230854378 + LTR10A LTR ERV1 97 548 -61 1836 137 42 118 chr1 11809988 11810335 -230854018 - MER44D DNA MER2_type -2033 454 90 1437 163 41 41 chr1 11810335 11810630 -230853723 - AluJb SINE Alu -17 295 1 1836 137 42 118 chr1 11810630 11810713 -230853640 - MER44D DNA MER2_type -2397 90 2 670 235 50 0 chr1 11810716 11810895 -230853458 - Charlie2a DNA MER1_type -1033 1829 1642 2264 82 16 0 chr1 11810899 11811203 -230853150 - AluSp SINE Alu 0 313 5 580 240 0 0 chr1 11811217 11811338 -230853015 - FLAM_A SINE Alu -10 132 12 2184 45 0 31 chr1 11811353 11811691 -230852662 - AluY SINE Alu 0 329 1 478 176 155 7 chr1 11811704 11811846 -230852507 - Charlie2a DNA MER1_type -1214 1648 1486 1721 161 10 0 chr1 11811851 11812143 -230852210 - AluJo SINE Alu -17 295 1 1249 256 141 44 chr1 11812229 11812648 -230851705 - Charlie2b DNA MER1_type -2112 670 180 2067 125 3 0 chr1 11812648 11812952 -230851401 - AluSx SINE Alu -7 305 1 1249 256 141 44 chr1 11812952 11813099 -230851254 - Charlie2b DNA MER1_type -2602 180 49 384 315 51 35 chr1 11813147 11813344 -230851009 + L2 LINE L2 3113 3312 -1 2215 73 0 0 chr1 11815103 11815406 -230848947 + AluSc SINE Alu 5 307 0 266 316 0 0 chr1 11816124 11816203 -230848150 + Charlie2 DNA MER1_type 46 124 -2658 860 140 7 0 chr1 11816214 11816350 -230848003 - FLAM_C SINE Alu -6 137 1 2396 69 3 0 chr1 11816356 11816660 -230847693 - AluSp SINE Alu -8 305 1 274 167 24 119 chr1 11816722 11816806 -230847547 + Charlie2 DNA MER1_type 204 279 -2583 2133 204 66 0 chr1 11816873 11817315 -230847038 - LTR51 LTR ERV1 0 671 201 23 33 0 0 chr1 11817424 11817454 -230846899 + AT_rich Low_complexity Low_complexity 1 30 0 1521 179 4 15 chr1 11817459 11817732 -230846621 - AluJo SINE Alu -35 277 8 868 142 41 41 chr1 11818137 11818306 -230846047 + MER5A DNA MER1_type 6 174 -15 219 229 16 84 chr1 11819463 11819546 -230844807 - MER5A DNA MER1_type -72 106 29 44 35 0 0 chr1 11820291 11820349 -230844004 + AT_rich Low_complexity Low_complexity 1 58 0 370 273 87 31 chr1 11821726 11821887 -230842466 + L2 LINE L2 3140 3309 -4 22 0 0 0 chr1 11823538 11823560 -230840793 + AT_rich Low_complexity Low_complexity 1 22 0 1894 109 56 0 chr1 11823562 11823847 -230840506 + AluSg SINE Alu 1 301 -9 195 42 0 0 chr1 11824907 11824931 -230839422 + (CA)n Simple_repeat Simple_repeat 2 25 0 312 206 76 54 chr1 11825341 11825433 -230838920 - L1MCa LINE L1 -4355 2071 1978 28 0 0 0 chr1 11825435 11825463 -230838890 + AT_rich Low_complexity Low_complexity 1 28 0 1749 131 51 0 chr1 11825466 11825741 -230838612 - AluJb SINE Alu -23 289 1 276 276 81 11 chr1 11825788 11825875 -230838478 - L2 LINE L2 -8 3264 3172 432 316 93 0 chr1 11826275 11826512 -230837841 - MIR SINE MIR 0 262 4 240 35 0 0 chr1 11826620 11826649 -230837704 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1902 121 0 0 chr1 11826649 11826929 -230837424 - AluSx SINE Alu -32 280 1 2239 80 0 0 chr1 11827743 11828031 -230836322 - AluSg SINE Alu -12 298 11 2013 145 17 20 chr1 11828148 11828499 -230835854 - L1MB7 LINE L1 -19 6165 5816 808 201 0 0 chr1 11828507 11828656 -230835697 - FRAM SINE Alu -23 153 5 2338 189 72 41 chr1 11828661 11829345 -230835008 - L1MB7 LINE L1 -569 5605 4874 2402 59 3 3 chr1 11829345 11829648 -230834705 - AluSp SINE Alu -10 303 1 2338 189 72 41 chr1 11829648 11829858 -230834495 - L1MB7 LINE L1 -1300 4874 4672 207 279 66 66 chr1 11830947 11831083 -230833270 - L2 LINE L2 -43 3270 3135 362 296 56 21 chr1 11831331 11831473 -230832880 + MIR SINE MIR 10 156 -106 2407 63 0 28 chr1 11831504 11831823 -230832530 + AluY SINE Alu 2 311 0 2220 103 0 3 chr1 11832714 11833016 -230831337 + AluSx SINE Alu 1 301 -11 256 154 0 0 chr1 11833437 11833476 -230830877 - 5S rRNA rRNA -79 42 4 599 326 11 11 chr1 11834635 11834825 -230829528 + MIR SINE MIR 59 248 -14 2098 109 0 0 chr1 11834825 11835108 -230829245 + AluSg SINE Alu 1 283 -27 186 43 0 0 chr1 11835108 11835131 -230829222 + (TA)n Simple_repeat Simple_repeat 1 23 0 421 302 8 16 chr1 11835924 11836053 -230828300 + LTR67 LTR ERVL 428 555 -2 203 206 247 14 chr1 11836075 11836148 -230828205 + L2 LINE L2 3211 3300 -13 237 108 0 0 chr1 11836149 11836186 -230828167 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 843 85 115 0 chr1 11836668 11836798 -230827555 - L1PA13 LINE L1 -376 5787 5643 2255 123 57 8 chr1 11836800 11837166 -230827187 + L1PA13 LINE L1 5778 6161 -2 238 308 122 14 chr1 11837434 11837655 -230826698 + L2 LINE L2 2454 2698 -616 1589 208 30 14 chr1 11837685 11838050 -230826303 + MLT1A2 LTR MaLR 2 372 -2 1024 163 6 0 chr1 11838244 11838410 -230825943 + MSTB LTR MaLR 1 167 -259 497 306 97 54 chr1 11838735 11839388 -230824965 + L2 LINE L2 2299 3022 -250 21 36 0 0 chr1 11839847 11839875 -230824478 + AT_rich Low_complexity Low_complexity 1 28 0 189 286 63 63 chr1 11840227 11840353 -230824000 - MIR SINE MIR -78 184 59 312 228 13 13 chr1 11840628 11840707 -230823646 - MER103 DNA DNA -66 100 22 2290 57 57 0 chr1 11841872 11842153 -230822200 + AluY SINE Alu 1 297 -14 239 246 0 18 chr1 11842693 11842750 -230821603 + CT-rich Low_complexity Low_complexity 2 57 0 410 266 112 89 chr1 11842881 11843275 -230821078 + MLT1J LTR MaLR 25 427 -84 2162 114 3 3 chr1 11845223 11845520 -230818833 + AluSg1 SINE Alu 1 297 -12 434 263 35 29 chr1 11845601 11845772 -230818581 - MIR SINE MIR -13 249 78 350 89 0 0 chr1 11845901 11845949 -230818404 - MLT2D LTR ERVL -6 391 349 317 241 0 19 chr1 11845950 11846058 -230818295 + (TATATG)n Simple_repeat Simple_repeat 1 106 0 253 215 0 15 chr1 11846059 11846093 -230818260 + (TG)n Simple_repeat Simple_repeat 2 36 -29 1235 181 97 28 chr1 11846093 11846413 -230817940 - MER2 DNA MER2_type -1 343 2 253 215 0 15 chr1 11846413 11846443 -230817910 + (TG)n Simple_repeat Simple_repeat 36 65 0 1306 109 0 0 chr1 11846473 11846647 -230817706 + AluSq SINE Alu 130 303 -10 1031 212 82 20 chr1 11846908 11847153 -230817200 - MLT2D LTR ERVL -143 271 12 6431 34 1 1 chr1 11847253 11848519 -230815834 + L1PA4 LINE L1 4750 6015 -140 3632 80 2 25 chr1 11849213 11849724 -230814629 + L1PA4 LINE L1 5657 6155 0 1864 116 116 0 chr1 11851637 11851930 -230812423 + MER41C LTR ERV1 228 554 0 7525 113 35 15 chr1 11852018 11853156 -230811197 + MER41C-int LTR ERV1 4 1164 -6592 236 98 0 24 chr1 11853929 11853970 -230810383 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 314 299 30 8 chr1 11854532 11854666 -230809687 - MER5A DNA MER1_type -38 151 15 249 288 15 0 chr1 11855356 11855422 -230808931 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 304 176 56 56 chr1 11855754 11855862 -230808491 + MLT1K LTR MaLR 395 502 -86 1083 161 0 0 chr1 11855901 11856069 -230808284 - AluSg/x SINE Alu 0 310 143 488 232 1 0 chr1 11856172 11856296 -230808057 - L1M4 LINE L1 -448 5726 5602 246 263 188 23 chr1 11856794 11856927 -230807426 - MLT1H1 LTR MaLR -335 220 66 1437 97 5 0 chr1 11857328 11857514 -230806839 + AluSx SINE Alu 1 187 -125 2234 105 0 0 chr1 11857905 11858199 -230806154 - AluSx SINE Alu -18 294 1 2149 151 30 30 chr1 11859738 11860102 -230804251 - THE1B LTR MaLR 0 364 1 2264 99 10 0 chr1 11860636 11860938 -230803415 - AluSx SINE Alu -7 305 1 200 210 109 80 chr1 11861565 11861703 -230802650 + L2 LINE L2 2487 2628 -686 2473 182 23 49 chr1 11862158 11862686 -230801667 - MLT2B2 LTR ERVL -1 514 1 1005 126 0 0 chr1 11862884 11863019 -230801334 + AluSq/x SINE Alu 1 135 -178 2015 142 0 0 chr1 11863019 11863340 -230801013 + AluSx SINE Alu 1 321 0 4116 134 17 36 chr1 11863340 11864033 -230800320 + L1PA16 LINE L1 5486 6165 -1 280 275 50 50 chr1 11864440 11864600 -230799753 - MER113 DNA MER1_type? -49 472 313 268 86 0 0 chr1 11864710 11864745 -230799608 + Alu SINE Alu 1 35 -267 390 268 100 45 chr1 11865234 11865439 -230798914 - MLT1J2 LTR MaLR 0 409 238 940 270 72 13 chr1 11865484 11865788 -230798565 - L1MC4a LINE L1 0 7808 7487 624 177 0 0 chr1 11865811 11865907 -230798446 - FLAM_A SINE Alu -26 116 21 226 307 69 0 chr1 11865922 11866023 -230798330 - L1MC4 LINE L1 -467 7575 7468 2443 96 0 0 chr1 11866084 11866396 -230797957 - AluSq SINE Alu -1 312 1 1327 159 12 84 chr1 11866396 11866717 -230797636 - L1MB1 LINE L1 -14 6154 5857 7255 225 22 11 chr1 11866817 11869102 -230795251 + L1MB2 LINE L1 1457 3748 -2398 3838 178 12 0 chr1 11869224 11869905 -230794448 + L1MB2 LINE L1 5476 6164 -7 21 36 0 0 chr1 11869905 11869933 -230794420 + AT_rich Low_complexity Low_complexity 1 28 0 1002 235 52 54 chr1 11870253 11870323 -230794030 + L1M4 LINE L1 2626 2695 -3451 1583 106 0 5 chr1 11870323 11870531 -230793822 - AluSq SINE Alu -106 207 1 1002 235 52 54 chr1 11870531 11870847 -230793506 + L1M4 LINE L1 2695 3011 -3135 1105 231 15 68 chr1 11871089 11871166 -230793187 + MER49 LTR ERV1 555 634 -289 1796 130 17 47 chr1 11871166 11871305 -230793048 + AluSx SINE Alu 7 149 -163 2407 71 3 0 chr1 11871305 11871601 -230792752 + AluY SINE Alu 1 297 -14 1796 130 17 47 chr1 11871601 11871761 -230792592 + AluSx SINE Alu 149 297 -15 1105 231 15 68 chr1 11871761 11872007 -230792346 + MER49 LTR ERV1 634 861 -62 764 145 38 23 chr1 11872022 11872153 -230792200 - FLAM_C SINE Alu 0 133 1 1305 101 6 6 chr1 11872167 11872345 -230792008 - AluSg/x SINE Alu -14 296 119 1941 177 75 60 chr1 11872561 11872935 -230791418 + L1PA15 LINE L1 5688 6072 -93 1739 148 59 3 chr1 11872935 11873225 -230791128 + AluSx SINE Alu 1 306 -6 1941 177 75 60 chr1 11873225 11873314 -230791039 + L1PA15 LINE L1 6072 6158 -7 1663 242 90 0 chr1 11873311 11873700 -230790653 - L1M3f LINE L1 -4362 966 543 * 633 123 41 23 chr1 11874513 11874757 -230789596 + AluSx SINE Alu 1 309 0 2286 116 3 0 chr1 11874759 11875069 -230789284 + AluSp SINE Alu 1 311 -2 591 212 9 0 chr1 11875480 11875593 -230788760 + AluJb SINE Alu 3 116 -196 2090 134 0 3 chr1 11877657 11877956 -230786397 - AluSx SINE Alu -14 298 1 1073 79 0 29 chr1 11877956 11878095 -230786258 - AluSq/x SINE Alu -178 135 1 2634 55 0 10 chr1 11878431 11878743 -230785610 - AluY SINE Alu -2 309 1 189 74 0 0 chr1 11879465 11879492 -230784861 + (TAA)n Simple_repeat Simple_repeat 3 29 0 278 284 49 88 chr1 11879750 11879954 -230784399 + Charlie8 DNA MER1_type 9 204 -2213 2731 108 12 5 chr1 11881139 11881547 -230782806 + L1PB2 LINE L1 5741 6151 0 944 308 119 52 chr1 11881548 11882466 -230781887 + L2 LINE L2 1697 2675 -639 1737 127 88 0 chr1 11882866 11883151 -230781202 - AluSx SINE Alu 0 308 1 375 253 44 44 chr1 11883337 11883389 -230780964 - MIR SINE MIR -4 258 207 2046 148 0 19 chr1 11883389 11883699 -230780654 - AluSx SINE Alu -8 304 1 375 253 44 44 chr1 11883699 11883804 -230780549 - MIR SINE MIR -54 208 101 545 274 6 12 chr1 11884011 11884175 -230780178 + LTR33 LTR ERVL 4 166 -355 1185 233 16 46 chr1 11884270 11884643 -230779710 + MER20B DNA MER1_type 417 778 -5 1086 224 75 25 chr1 11884646 11884967 -230779386 - MER58B DNA MER1_type -2 339 3 203 307 57 29 chr1 11885928 11886068 -230778285 + L2 LINE L2 3008 3151 -162 239 229 66 0 chr1 11887759 11887820 -230776533 - LTR33 LTR ERVL -126 395 331 364 286 153 51 chr1 11887871 11888067 -230776286 - LTR33 LTR ERVL -305 216 1 2058 66 4 26 chr1 11888364 11888637 -230775716 + AluY SINE Alu 44 310 -1 772 205 7 0 chr1 11889016 11889167 -230775186 - MLT1B LTR MaLR -105 285 134 1108 255 19 11 chr1 11889168 11889492 -230774861 - MER93b LTR ERV1 0 373 61 465 180 60 0 chr1 11889601 11889701 -230774652 - MLT1B LTR MaLR -256 134 29 2516 119 11 16 chr1 11889706 11890083 -230774270 + THE1C LTR MaLR 1 375 0 432 298 36 18 chr1 11890280 11890448 -230773905 + MER5B DNA MER1_type 6 176 -2 335 247 17 107 chr1 11890460 11890638 -230773715 + MER5B DNA MER1_type 17 178 0 546 222 44 56 chr1 11890732 11890912 -230773441 + MER5B DNA MER1_type 1 178 0 473 157 0 0 chr1 11891177 11891247 -230773106 - AluSg/x SINE Alu -106 206 137 2251 110 0 13 chr1 11891384 11891694 -230772659 + AluSc SINE Alu 3 308 -1 911 111 0 0 chr1 11891720 11891837 -230772516 + AluSg SINE Alu 1 117 -193 180 111 0 0 chr1 11891980 11892007 -230772346 + (A)n Simple_repeat Simple_repeat 1 27 0 1837 94 45 0 chr1 11892104 11892349 -230772004 + AluSx SINE Alu 1 256 -56 420 251 86 74 chr1 11892415 11892590 -230771763 - L1MEd LINE L1 -5712 407 231 2474 75 3 0 chr1 11892678 11892984 -230771369 - AluY SINE Alu -3 308 2 307 89 0 0 chr1 11893086 11893131 -230771222 + HERV9 LTR ERV1 1005 1049 -7577 * 1960 105 7 14 chr1 11893118 11893412 -230770941 + HERV9 LTR ERV1 1275 4405 -3380 957 141 0 12 chr1 11893385 11893548 -230770805 + HERV9 LTR ERV1 1580 1740 -5156 * 646 49 0 0 chr1 11893546 11893627 -230770726 + HERV9 LTR ERV1 7626 7706 -693 * 2256 63 0 0 chr1 11893727 11894080 -230770273 - L1PA8A LINE L1 -596 5535 5183 2611 118 96 0 chr1 11894086 11894494 -230769859 - MER41C LTR ERV1 -107 447 1 18885 103 8 9 chr1 11894494 11897111 -230767242 - MER41C-int LTR ERV1 0 7756 5141 1640 112 0 9 chr1 11897111 11897343 -230767010 - MER41C-int LTR ERV1 -3133 4623 4394 * 2693 89 84 0 chr1 11897338 11897719 -230766634 - PRIMA41-int LTR ERV1 -4701 3055 2643 18152 88 2 0 chr1 11897819 11900214 -230764139 - L1P LINE L1 -3746 2400 1 6459 80 7 64 chr1 11900237 11901775 -230762578 - SVA Other Other -590 1385 433 1851 154 26 3 chr1 11901918 11902223 -230762130 - AluSx SINE Alu 0 312 1 301 283 168 0 chr1 11902699 11902812 -230761541 - L2 LINE L2 -3 3310 3179 2201 97 3 13 chr1 11902918 11903218 -230761135 - AluSc SINE Alu -12 297 1 2142 109 7 0 chr1 11903280 11903565 -230760788 - AluSx SINE Alu 0 312 26 227 327 20 65 chr1 11903582 11903735 -230760618 + L2 LINE L2 3164 3309 -4 2134 119 10 0 chr1 11904278 11904571 -230759782 - AluSq SINE Alu -17 296 1 1102 206 61 4 chr1 11904592 11904839 -230759514 - MER31B LTR ERV1 0 466 206 1885 167 0 0 chr1 11905269 11905563 -230758790 - AluSx SINE Alu -18 294 1 2190 68 0 8 chr1 11905980 11906246 -230758107 + AluY SINE Alu 30 293 -18 1935 107 4 22 chr1 11906502 11906774 -230757579 - AluSx SINE Alu -45 267 1 834 164 0 0 chr1 11906803 11906925 -230757428 + FLAM_C SINE Alu 1 122 -21 26 0 0 0 chr1 11906925 11906951 -230757402 + AT_rich Low_complexity Low_complexity 1 26 0 198 171 0 0 chr1 11906978 11907019 -230757334 + GA-rich Low_complexity Low_complexity 4 44 0 1994 119 0 4 chr1 11907041 11907310 -230757043 + AluSq SINE Alu 35 302 -11 2281 108 0 0 chr1 11907499 11907794 -230756559 - AluSg SINE Alu -15 295 1 192 200 0 0 chr1 11908052 11908092 -230756261 + (TG)n Simple_repeat Simple_repeat 1 40 0 2279 106 0 0 chr1 11909475 11909767 -230754586 - AluSc SINE Alu -17 292 1 1863 133 48 48 chr1 11909856 11910150 -230754203 - AluSq SINE Alu -19 294 1 934 163 0 68 chr1 11910367 11910557 -230753796 + FRAM SINE Alu 1 176 0 23 33 0 0 chr1 11911217 11911247 -230753106 + AT_rich Low_complexity Low_complexity 1 30 0 477 161 12 0 chr1 11911309 11911390 -230752963 - MER6B DNA MER2_type -1 209 128 * 696 171 0 0 chr1 11911360 11911471 -230752882 - MER6B DNA MER2_type -165 111 1 184 161 247 25 chr1 11911532 11911613 -230752740 - MER5C DNA MER1_type 0 324 226 276 186 71 106 chr1 11911633 11911669 -230752684 - MER5C DNA MER1_type -200 124 88 2351 100 0 0 chr1 11911669 11911970 -230752383 + AluSq SINE Alu 1 301 -12 276 186 71 106 chr1 11911970 11912046 -230752307 - MER5C DNA MER1_type -236 88 16 245 347 140 0 chr1 11912235 11912428 -230751925 + L2 LINE L2 2815 3034 -279 1540 162 79 7 chr1 11912459 11912750 -230751603 - LTR10B LTR ERV1 0 505 176 1004 192 49 5 chr1 11912846 11913049 -230751304 + MER58A DNA MER1_type 5 216 -8 333 263 38 65 chr1 11913082 11913268 -230751085 + L2 LINE L2 3111 3291 -22 2934 122 30 26 chr1 11913275 11913631 -230750722 - L1MB2 LINE L1 -2 6169 5809 2207 104 13 3 chr1 11913631 11913939 -230750414 + AluSp SINE Alu 1 311 -2 2934 122 30 26 chr1 11913939 11914081 -230750272 - L1MB2 LINE L1 -362 5809 5669 2448 75 0 0 chr1 11914786 11915094 -230749259 + AluY SINE Alu 2 309 -2 2644 151 36 4 chr1 11915115 11915592 -230748761 + L1MB3 LINE L1 5684 6175 -8 252 213 66 0 chr1 11916911 11916972 -230747381 - MLT1J LTR MaLR 0 511 447 180 0 0 0 chr1 11917721 11917741 -230746612 + (T)n Simple_repeat Simple_repeat 1 20 0 1013 134 114 124 chr1 11918353 11918651 -230745702 + AluJo SINE Alu 2 296 -6 2240 104 10 7 chr1 11919126 11919434 -230744919 - AluSc SINE Alu 0 309 1 6084 90 16 8 chr1 11920066 11921108 -230743245 - Harlequin LTR ERV1 0 8399 504 1153 120 3 7 chr1 11921106 11921444 -230742909 - Harlequin LTR ERV1 -5156 1740 1363 * 370 193 8 126 chr1 11921732 11921782 -230742571 - MER5C DNA MER1_type -200 124 94 2405 94 0 0 chr1 11921782 11922079 -230742274 - AluSq SINE Alu -16 297 1 370 193 8 126 chr1 11922079 11922147 -230742206 - MER5C DNA MER1_type -230 94 20 1019 300 24 39 chr1 11922193 11922231 -230742122 - L2 LINE L2 0 3313 3276 1659 136 103 81 chr1 11922231 11922650 -230741703 - MSTA LTR MaLR 0 428 1 1019 300 24 39 chr1 11922650 11923214 -230741139 - L2 LINE L2 -37 3276 2723 2648 222 2 14 chr1 11923288 11923796 -230740557 + MLT1F LTR MaLR 26 527 -15 320 281 0 0 chr1 11924264 11924346 -230740007 - L2 LINE L2 0 3313 3232 1059 195 67 158 chr1 11924480 11924773 -230739580 - MLT1A1 LTR MaLR 0 365 154 2599 68 0 0 chr1 11924773 11925082 -230739271 + AluY SINE Alu 1 309 -2 1059 195 67 158 chr1 11925082 11925224 -230739129 - MLT1A1 LTR MaLR -211 154 1 325 270 54 107 chr1 11925414 11925757 -230738596 - L2 LINE L2 -247 3066 2749 630 241 70 26 chr1 11926722 11926950 -230737403 + MLT1L LTR MaLR 149 386 -229 1372 114 92 13 chr1 11927089 11927317 -230737036 - MSTB1 LTR MaLR 0 432 187 2690 97 0 0 chr1 11927317 11927666 -230736687 - HSMAR1 DNA Mariner -1 1286 938 664 173 9 0 chr1 11927783 11927893 -230736460 - FLAM_C SINE Alu -22 121 11 543 260 85 25 chr1 11927986 11928340 -230736013 - L1M4 LINE L1 -2680 3466 3092 2406 83 0 0 chr1 11929116 11929405 -230734948 + AluSg SINE Alu 5 293 -17 1124 132 0 0 chr1 11930049 11930208 -230734145 + FRAM SINE Alu 1 155 -21 1073 189 15 5 chr1 11930248 11930444 -230733909 - AluJb SINE Alu -28 284 87 379 181 0 36 chr1 11930516 11930599 -230733754 - MER116 DNA Mariner 0 80 1 7795 79 5 41 chr1 11930623 11931735 -230732618 - MER11C LTR ERVK 0 1071 1 2075 144 0 7 chr1 11931860 11932165 -230732188 + AluJb SINE Alu 1 303 -9 2324 83 10 0 chr1 11933579 11933868 -230730485 + AluSc SINE Alu 1 292 -17 851 269 174 30 chr1 11934053 11934615 -230729738 - L1M4 LINE L1 -1979 4167 3525 1289 69 0 98 chr1 11934750 11934953 -230729400 + Charlie3 DNA MER1_type 2524 2706 -4 * 1326 163 135 76 chr1 11934951 11935232 -230729121 - MLT1C LTR MaLR -46 421 109 919 83 0 30 chr1 11935232 11935365 -230728988 - FLAM_C SINE Alu 0 133 5 1326 163 135 76 chr1 11935365 11935476 -230728877 - MLT1C LTR MaLR -358 109 6 1906 135 45 0 chr1 11935594 11935883 -230728470 - AluJb SINE Alu -10 302 1 2285 104 0 3 chr1 11936495 11936794 -230727559 + AluSg SINE Alu 6 303 -7 3991 181 40 12 chr1 11936924 11937392 -230726961 - L1MB3 LINE L1 -155 6028 5574 589 216 9 9 chr1 11937392 11937530 -230726823 - FLAM_A SINE Alu 0 139 2 3991 181 40 12 chr1 11937530 11938231 -230726122 - L1MB3 LINE L1 -609 5574 4822 304 296 43 0 chr1 11939288 11939403 -230724950 + MIR3 SINE MIR 82 201 -7 266 256 44 7 chr1 11939788 11939925 -230724428 + (TA)n Simple_repeat Simple_repeat 1 142 0 2517 85 0 0 chr1 11941013 11941320 -230723033 + AluSx SINE Alu 1 307 -5 1106 60 0 8 chr1 11941320 11941453 -230722900 + AluY SINE Alu 1 132 -179 833 254 106 106 chr1 11941828 11941870 -230722483 + MLT1K LTR MaLR 2 43 -545 2218 108 3 0 chr1 11941870 11942165 -230722188 - AluSx SINE Alu -14 298 3 833 254 106 106 chr1 11942165 11942399 -230721954 + MLT1K LTR MaLR 43 276 -312 2218 97 0 17 chr1 11942399 11942697 -230721656 - AluSp SINE Alu -20 293 1 833 254 106 106 chr1 11942697 11943006 -230721347 + MLT1K LTR MaLR 275 588 0 5890 41 0 3 chr1 11943100 11943802 -230720551 + L1PA8 LINE L1 5469 6168 -4 21 36 0 0 chr1 11943994 11944022 -230720331 + AT_rich Low_complexity Low_complexity 1 28 0 697 218 0 0 chr1 11944460 11944593 -230719760 + FLAM_A SINE Alu 1 133 0 2484 62 10 0 chr1 11944648 11944952 -230719401 + AluY SINE Alu 1 307 -4 2350 116 0 0 chr1 11944962 11945272 -230719081 + AluSg SINE Alu 1 310 0 2309 103 0 10 chr1 11945697 11946008 -230718345 - AluSx SINE Alu -4 308 1 180 135 0 0 chr1 11946129 11946166 -230718187 + (A)n Simple_repeat Simple_repeat 1 37 0 721 0 0 0 chr1 11946325 11946440 -230717913 + L1PA3 LINE L1 6071 6185 0 345 314 39 0 chr1 11947586 11947688 -230716665 + MER81 DNA DNA 9 114 0 2071 114 34 0 chr1 11947774 11948071 -230716282 + AluSx SINE Alu 1 307 -5 1112 113 39 87 chr1 11948875 11949105 -230715248 + MER20 DNA MER1_type 1 219 0 502 160 6 141 chr1 11949123 11949279 -230715074 - L1MB8 LINE L1 -84 6094 5960 259 150 25 0 chr1 11949318 11949377 -230714976 - MIR SINE MIR -68 140 94 1139 196 0 60 chr1 11949419 11949588 -230714765 - MER58A DNA MER1_type -2196 224 71 1914 105 10 61 chr1 11949588 11949884 -230714469 + AluSg SINE Alu 21 301 -9 1139 196 0 60 chr1 11949884 11949949 -230714404 - MER58A DNA MER1_type -2349 71 4 254 241 71 62 chr1 11950238 11950350 -230714003 - L1MB8 LINE L1 -340 5822 5710 740 133 83 0 chr1 11950405 11950525 -230713828 - FLAM_C SINE Alu -1 132 3 450 223 45 109 chr1 11950569 11950789 -230713564 + MIR SINE MIR 25 230 -32 3014 114 7 14 chr1 11950872 11951309 -230713044 - MER57B LTR ERV1 0 434 1 210 158 0 0 chr1 11951376 11951414 -230712939 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 516 104 99 28 chr1 11951718 11951847 -230712506 - THE1C LTR MaLR 0 375 211 2740 180 15 21 chr1 11951994 11952674 -230711679 - L1MB5 LINE L1 -265 5909 5227 1824 150 21 3 chr1 11952674 11952961 -230711392 - AluJb SINE Alu -20 292 1 2740 180 15 21 chr1 11952961 11953135 -230711218 - L1MB5 LINE L1 -947 5227 5054 1606 103 4 30 chr1 11953135 11953367 -230710986 - AluSp SINE Alu -9 304 79 2740 180 15 21 chr1 11953367 11953402 -230710951 - L1MB5 LINE L1 -1120 5054 5020 2584 115 58 19 chr1 11953402 11953812 -230710541 - MSTB LTR MaLR 0 426 1 2740 180 15 21 chr1 11953812 11954005 -230710348 - L1MB5 LINE L1 -1154 5020 4768 689 225 0 0 chr1 11954005 11954125 -230710228 - FLAM_A SINE Alu -9 124 5 2568 166 25 53 chr1 11954139 11954701 -230709652 - L1MA9 LINE L1 -36 6276 5731 461 180 20 50 chr1 11954698 11954798 -230709555 - L1MB5 LINE L1 -1367 4779 4683 * 297 174 0 0 chr1 11954812 11954858 -230709495 + Charlie5 DNA MER1_type 361 406 -2206 * 479 154 22 22 chr1 11954851 11954942 -230709411 + Charlie5 DNA MER1_type 2534 2624 0 2822 72 6 6 chr1 11955241 11955603 -230708750 - THE1B LTR MaLR 0 364 3 306 267 158 12 chr1 11955639 11955804 -230708549 - MLT1L LTR MaLR -422 193 5 2254 99 3 3 chr1 11956715 11957007 -230707346 - AluSc SINE Alu -17 292 1 1413 224 29 7 chr1 11957053 11957334 -230707019 + AluJb SINE Alu 1 287 -25 2555 54 0 3 chr1 11957515 11957812 -230706541 - AluY SINE Alu -15 296 1 215 273 30 0 chr1 11957864 11957930 -230706423 - L2 LINE L2 -4 3268 3201 415 245 58 101 chr1 11957960 11958168 -230706185 - MIR SINE MIR -25 237 40 2476 109 34 0 chr1 11958188 11958538 -230705815 - THE1C LTR MaLR -13 362 1 195 317 85 24 chr1 11958578 11958660 -230705693 - L2 LINE L2 -181 3091 3005 1624 173 73 12 chr1 11959349 11959691 -230704662 + MER47A DNA MER2_type 1 363 -3 255 255 202 0 chr1 11960059 11960153 -230704200 + L2 LINE L2 3160 3272 0 225 256 22 22 chr1 11960548 11960638 -230703715 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 464 140 4 25 chr1 11960751 11961009 -230703344 + AluSq SINE Alu 1 309 -4 2129 104 7 0 chr1 11961317 11961621 -230702732 - AluSx SINE Alu 0 306 1 837 225 31 64 chr1 11961650 11961968 -230702385 + MLT2D LTR ERVL 83 391 -73 1463 173 36 0 chr1 11962361 11962609 -230701744 - AluSq SINE Alu -13 300 44 778 209 6 31 chr1 11962673 11962836 -230701517 - FRAM SINE Alu -5 161 3 29 0 0 0 chr1 11963442 11963471 -230700882 + AT_rich Low_complexity Low_complexity 1 29 0 2552 42 0 29 chr1 11963478 11963785 -230700568 + AluY SINE Alu 1 298 -13 2486 87 3 0 chr1 11963880 11964192 -230700161 + AluSq SINE Alu 1 313 0 1602 260 32 40 chr1 11964986 11965265 -230699088 - LTR33 LTR ERVL -2 519 244 2418 85 0 3 chr1 11965265 11965560 -230698793 + AluSx SINE Alu 1 294 -18 1602 260 32 40 chr1 11965560 11965803 -230698550 - LTR33 LTR ERVL -277 244 1 432 135 203 0 chr1 11966166 11966240 -230698113 + 5S rRNA rRNA 1 89 -32 691 194 0 30 chr1 11966251 11966385 -230697968 + FLAM_A SINE Alu 2 131 -2 274 296 62 0 chr1 11966617 11966698 -230697655 - L2 LINE L2 -29 3284 3199 213 329 109 16 chr1 11966697 11967019 -230697334 - L2 LINE L2 -1098 2216 1865 * 2379 66 0 7 chr1 11967376 11967685 -230696668 - AluY SINE Alu 0 307 1 2114 245 158 9 chr1 11967782 11968857 -230695496 + L2 LINE L2 2075 3313 0 259 247 35 24 chr1 11970296 11970381 -230693972 - MIR SINE MIR -77 131 46 681 125 10 10 chr1 11970383 11970487 -230693866 - FLAM_A SINE Alu -19 123 20 2155 98 10 10 chr1 11970907 11971204 -230693149 + AluSc SINE Alu 1 297 -12 1546 101 0 0 chr1 11971771 11971970 -230692383 + AluSc SINE Alu 1 199 -110 5149 99 10 28 chr1 11972939 11973004 -230691349 - HSMAR1 DNA Mariner -573 714 649 2154 54 47 39 chr1 11973004 11973308 -230691045 - AluY SINE Alu 0 306 1 5149 99 10 28 chr1 11973308 11973968 -230690385 - HSMAR1 DNA Mariner -638 649 1 1101 143 16 21 chr1 11973968 11974157 -230690196 - MSTB1 LTR MaLR -244 188 1 352 316 125 6 chr1 11974416 11974584 -230689769 + MIR SINE MIR 3 190 -72 2246 70 0 20 chr1 11974625 11974927 -230689426 - AluY SINE Alu -15 296 1 1808 124 68 45 chr1 11974928 11975308 -230689045 - Charlie1 DNA MER1_type -27 2734 2346 2388 74 3 0 chr1 11975621 11975920 -230688433 + AluSc SINE Alu 1 300 -9 370 155 0 0 chr1 11976740 11976798 -230687555 - Alu SINE Alu -1 300 243 2286 78 92 9 chr1 11977944 11978279 -230686074 - L1PA14 LINE L1 -5 6156 5794 318 268 45 58 chr1 11978391 11978641 -230685712 - L1MC4 LINE L1 -393 7649 7293 2398 64 0 7 chr1 11978845 11979143 -230685210 - AluY SINE Alu -15 296 1 680 209 9 65 chr1 11979144 11979377 -230684976 - L1MC4a LINE L1 -714 7165 6957 733 272 95 59 chr1 11979435 11979819 -230684534 - L1MC4 LINE L1 -858 6950 6581 2268 103 3 0 chr1 11979819 11980120 -230684233 - AluSq SINE Alu -9 304 3 733 272 95 59 chr1 11980120 11980786 -230683567 - L1MC4 LINE L1 -1227 6581 5857 2150 129 3 0 chr1 11980786 11981095 -230683258 - AluSx SINE Alu -2 310 1 733 272 95 59 chr1 11981095 11981629 -230682724 - L1MC4 LINE L1 -1951 5857 5344 776 151 0 27 chr1 11982383 11982529 -230681824 - AluSg/x SINE Alu -5 305 164 295 264 169 22 chr1 11982853 11983031 -230681322 - L1ME4a LINE L1 -164 5957 5754 946 187 28 6 chr1 11983872 11984054 -230680299 - MER20 DNA MER1_type 0 219 34 207 244 0 0 chr1 11989610 11989651 -230674702 + (CGTG)n Simple_repeat Simple_repeat 4 44 0 2156 126 0 3 chr1 11989863 11990156 -230674197 - AluSx SINE Alu -20 292 1 337 285 95 15 chr1 11990158 11990295 -230674058 + MIR SINE MIR 94 241 -21 217 313 16 0 chr1 11990557 11990621 -230673732 - L2 LINE L2 -15 3298 3234 1768 200 97 34 chr1 11991288 11991763 -230672590 + MLT1D LTR MaLR 1 505 0 446 145 0 0 chr1 11991893 11991969 -230672384 - MSTA LTR MaLR -352 76 1 923 299 34 37 chr1 11991972 11992545 -230671808 - L2 LINE L2 -37 3276 2709 2652 222 2 14 chr1 11992606 11993114 -230671239 + MLT1F LTR MaLR 26 527 -15 181 269 74 56 chr1 11993115 11993223 -230671130 - L2 LINE L2 -55 3258 3149 337 293 0 0 chr1 11993597 11993679 -230670674 - L2 LINE L2 0 3313 3232 1062 205 0 5 chr1 11993813 11994008 -230670345 - MLT1A1 LTR MaLR 0 365 172 380 123 0 110 chr1 11994032 11994105 -230670248 - MLT1A1 LTR MaLR -172 193 129 2228 68 0 32 chr1 11994106 11994417 -230669936 + AluY SINE Alu 1 301 -10 1717 101 65 14 chr1 11994425 11994703 -230669650 + AluSg SINE Alu 2 293 -17 1837 164 0 0 chr1 12045016 12045321 -230619032 + AluSx SINE Alu 1 305 -7 1672 179 0 3 chr1 12045805 12046101 -230618252 + AluSx SINE Alu 1 295 -17 749 161 21 28 chr1 12046110 12046253 -230618100 - FLAM_C SINE Alu 0 143 2 182 230 27 81 chr1 12047441 12047515 -230616838 + L2 LINE L2 3202 3271 -1 2096 116 3 0 chr1 12049176 12049487 -230614866 + AluSx SINE Alu 1 312 0 1266 234 0 7 chr1 12049628 12049936 -230614417 + AluJb SINE Alu 1 306 -6 854 206 8 124 chr1 12050023 12050156 -230614197 + AluJo SINE Alu 3 93 -219 2024 151 0 0 chr1 12050156 12050467 -230613886 + AluSx SINE Alu 1 311 -1 854 206 8 124 chr1 12050467 12050590 -230613763 + AluJo SINE Alu 93 229 -83 374 234 0 12 chr1 12050698 12050781 -230613572 - AluS SINE Alu -231 70 1 937 210 32 0 chr1 12051296 12051515 -230612838 - AluSg/x SINE Alu -2 308 83 793 254 0 15 chr1 12053493 12053694 -230610659 - AluJb SINE Alu -99 213 16 1288 57 4 18 chr1 12053695 12053921 -230610432 + (TTTC)n Simple_repeat Simple_repeat 1 223 0 1659 174 17 0 chr1 12053935 12054229 -230610124 - AluY SINE Alu -10 301 3 1477 188 7 3 chr1 12054809 12055102 -230609251 + AluSx SINE Alu 5 298 -14 26 0 0 0 chr1 12056144 12056170 -230608183 + AT_rich Low_complexity Low_complexity 1 26 0 1803 144 3 0 chr1 12056468 12056753 -230607600 - AluSq SINE Alu -25 288 3 735 237 0 0 chr1 12056831 12057000 -230607353 - AluSx SINE Alu -15 297 129 571 192 0 0 chr1 12057019 12057123 -230607230 - AluSx SINE Alu -17 293 190 759 194 0 0 chr1 12057123 12057257 -230607096 - AluSx SINE Alu -176 136 3 21 71 0 0 chr1 12060531 12060573 -230603780 + AT_rich Low_complexity Low_complexity 1 42 0 440 210 17 42 chr1 12060581 12060700 -230603653 - FLAM_C SINE Alu -17 116 1 1278 247 0 0 chr1 12061084 12061371 -230602982 - AluSx SINE Alu -7 305 19 5700 226 35 77 chr1 12062080 12063706 -230600647 + MER52A LTR ERV1 61 1749 -6 935 250 11 0 chr1 12063709 12064047 -230600306 + L1 LINE L1 3441 3785 -3780 2615 244 9 63 chr1 12064103 12065049 -230599304 + L1 LINE L1 5374 6268 -1297 1369 265 44 40 chr1 12065203 12065479 -230598874 - MER41E LTR ERV1 -22 490 208 1983 122 3 0 chr1 12065479 12065793 -230598560 - AluSp SINE Alu 0 315 1 1369 265 44 40 chr1 12065793 12065990 -230598363 - MER41E LTR ERV1 -304 208 13 396 111 0 0 chr1 12066113 12066176 -230598177 + (TTCCC)n Simple_repeat Simple_repeat 2 64 0 1159 69 0 16 chr1 12066189 12066433 -230597920 + (TTTC)n Simple_repeat Simple_repeat 1 240 0 18636 83 2 0 chr1 12066434 12069738 -230594615 - L1PA7 LINE L1 -18 6136 2827 1082 54 0 27 chr1 12069738 12069879 -230594474 - L1PA4 LINE L1 0 6155 6013 1538 44 0 0 chr1 12069879 12070060 -230594293 + L1PA4 LINE L1 5803 5983 -172 * 22025 77 1 0 chr1 12070056 12072888 -230591465 - L1PA7 LINE L1 -3306 2840 8 833 194 7 0 chr1 12072893 12073032 -230591321 - AluSq/x SINE Alu -170 142 3 196 293 67 40 chr1 12073205 12073280 -230591073 - L2 LINE L2 -27 3245 3169 2472 219 104 19 chr1 12073332 12073998 -230590355 + L1MC1 LINE L1 5601 6322 -11 1474 170 0 57 chr1 12073999 12074282 -230590071 + AluSx SINE Alu 1 267 -45 1341 187 0 0 chr1 12074286 12074539 -230589814 + AluJb SINE Alu 58 310 0 1917 120 0 3 chr1 12074708 12074991 -230589362 - AluSg SINE Alu -28 282 1 1620 124 43 4 chr1 12075112 12075369 -230588984 - AluSg SINE Alu -43 267 1 1915 141 3 3 chr1 12075383 12075687 -230588666 - AluSp SINE Alu -9 304 1 379 248 78 16 chr1 12076022 12076151 -230588202 - MIR SINE MIR -9 253 117 1380 190 48 7 chr1 12076900 12077189 -230587164 + AluJo SINE Alu 3 303 -9 1640 159 7 33 chr1 12077189 12077490 -230586863 + AluSp SINE Alu 1 294 -19 1847 161 0 0 chr1 12078755 12079054 -230585299 + AluSx SINE Alu 6 304 -8 1672 179 0 3 chr1 12079538 12079834 -230584519 + AluSx SINE Alu 1 295 -17 727 168 21 28 chr1 12079843 12079986 -230584367 - FLAM_C SINE Alu 0 143 2 1733 121 71 0 chr1 12081047 12081328 -230583025 - AluSx SINE Alu -11 301 1 492 194 31 6 chr1 12082326 12082486 -230581867 + CT-rich Low_complexity Low_complexity 2 165 0 1332 192 7 31 chr1 12082486 12082773 -230581580 - AluJb SINE Alu -32 280 1 1562 177 0 0 chr1 12082890 12083150 -230581203 + AluSx SINE Alu 1 260 -52 736 181 0 56 chr1 12083588 12083748 -230580605 - AluSg/x SINE Alu -16 294 144 1209 187 112 11 chr1 12083823 12083968 -230580385 - AluJb SINE Alu -14 298 169 1643 159 0 37 chr1 12083968 12084263 -230580090 + AluSx SINE Alu 7 290 -22 1209 187 112 11 chr1 12084263 12084384 -230579969 - AluJb SINE Alu -143 169 5 1721 163 20 0 chr1 12084964 12085270 -230579083 + AluSx SINE Alu 1 312 0 848 161 0 0 chr1 12085707 12085844 -230578509 - AluSg/x SINE Alu -36 276 140 1403 188 3 52 chr1 12085926 12086112 -230578241 - AluJb SINE Alu -15 297 130 1687 154 0 39 chr1 12086112 12086417 -230577936 + AluSx SINE Alu 1 293 -19 1403 188 3 52 chr1 12086417 12086538 -230577815 - AluJb SINE Alu -182 130 5 1547 169 10 24 chr1 12087115 12087411 -230576942 + AluSx SINE Alu 5 296 -16 2819 207 60 2 chr1 12087781 12088351 -230576002 + LTR26 LTR ERV1 1 603 0 887 201 167 17 chr1 12088439 12088727 -230575626 + LTR44 LTR ERV1 6 336 -183 343 129 16 16 chr1 12088805 12088867 -230575486 + Alu SINE Alu 247 308 0 1813 145 0 11 chr1 12088868 12089188 -230575165 + AluSc SINE Alu 1 317 0 1911 138 0 3 chr1 12089540 12089855 -230574498 - AluSc SINE Alu 0 314 1 232 197 16 0 chr1 12089910 12089971 -230574382 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 1818 136 4 0 chr1 12089973 12090252 -230574101 - AluSq SINE Alu -21 292 13 315 0 0 0 chr1 12090620 12090655 -230573698 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1737 127 14 0 chr1 12090655 12090930 -230573423 - AluSx SINE Alu -33 279 1 300 286 62 27 chr1 12091387 12091499 -230572854 - L1M4 LINE L1 -3104 3042 2927 1599 143 6 89 chr1 12093239 12093378 -230570975 + AluJb SINE Alu 5 105 -207 1773 142 0 4 chr1 12093378 12093659 -230570694 - AluSx SINE Alu -32 280 1 1599 143 6 89 chr1 12093659 12093697 -230570656 + AluJb SINE Alu 105 293 -19 844 124 15 22 chr1 12093697 12093834 -230570519 + FRAM SINE Alu 22 157 -19 1816 136 3 0 chr1 12094079 12094366 -230569987 + AluSx SINE Alu 1 288 -24 1830 157 14 0 chr1 12095029 12095323 -230569030 - AluSg SINE Alu -10 300 3 246 173 93 53 chr1 12095333 12095408 -230568945 + LTR45B LTR ERV1 412 489 0 1608 166 90 134 chr1 12096481 12097024 -230567329 - LTR44 LTR ERV1 0 519 1 507 231 82 34 chr1 12097171 12097379 -230566974 - MER65A LTR ERV1 -17 428 211 2753 199 65 5 chr1 12097512 12098081 -230566272 - LTR26 LTR ERV1 0 603 1 1650 153 10 23 chr1 12098452 12098752 -230565601 - AluSx SINE Alu -16 296 1 1381 172 3 71 chr1 12099323 12099447 -230564906 + AluJb SINE Alu 5 136 -176 1539 149 10 43 chr1 12099447 12099749 -230564604 - AluSx SINE Alu -20 292 1 1381 172 3 71 chr1 12099749 12099950 -230564403 + AluJb SINE Alu 136 308 -4 736 199 7 0 chr1 12100017 12100153 -230564200 + AluSg/x SINE Alu 140 276 -36 1759 161 23 0 chr1 12100602 12100906 -230563447 - AluSx SINE Alu -1 311 1 307 292 53 26 chr1 12101359 12101472 -230562881 - L1M4 LINE L1 -3104 3042 2927 1301 189 3 59 chr1 12101479 12101600 -230562753 + AluJb SINE Alu 5 131 -181 1643 153 0 42 chr1 12101600 12101908 -230562445 - AluSx SINE Alu -17 295 1 1301 189 3 59 chr1 12101908 12102092 -230562261 + AluJb SINE Alu 131 293 -19 838 183 0 0 chr1 12102168 12102305 -230562048 + AluSg/x SINE Alu 140 276 -36 1456 194 11 0 chr1 12102746 12103019 -230561334 - AluSx SINE Alu -36 276 1 1295 180 22 32 chr1 12103140 12103418 -230560935 + AluJb SINE Alu 6 280 -32 426 201 34 7 chr1 12103418 12103567 -230560786 + GA-rich Low_complexity Low_complexity 2 154 0 1687 128 69 0 chr1 12104569 12104857 -230559496 + AluSx SINE Alu 1 308 -4 721 165 23 23 chr1 12105918 12106051 -230558302 + FLAM_C SINE Alu 1 133 0 1874 142 0 3 chr1 12106071 12106367 -230557986 - AluSx SINE Alu -17 295 1 1892 157 0 0 chr1 12106853 12107158 -230557195 - AluSx SINE Alu -7 305 1 1634 159 7 33 chr1 12108418 12108720 -230555633 - AluSp SINE Alu -19 294 1 1405 188 48 7 chr1 12108720 12109012 -230555341 - AluJo SINE Alu -7 305 1 356 256 78 16 chr1 12109753 12109882 -230554471 + MIR SINE MIR 117 253 -9 2100 117 0 3 chr1 12110217 12110524 -230553829 + AluSp SINE Alu 1 306 -7 1658 117 43 4 chr1 12110535 12110792 -230553561 + AluSg SINE Alu 1 267 -43 1971 109 0 3 chr1 12110913 12111196 -230553157 + AluSg SINE Alu 1 282 -28 1649 169 0 28 chr1 12111365 12111703 -230552650 - AluJb SINE Alu 0 330 1 1901 135 0 50 chr1 12111708 12112027 -230552326 - AluSx SINE Alu -9 303 1 2675 209 98 21 chr1 12112028 12112727 -230551626 - L1MC1 LINE L1 -11 6322 5583 195 293 67 40 chr1 12112749 12112824 -230551529 + L2 LINE L2 3169 3245 -27 1684 182 3 3 chr1 12112994 12113362 -230550991 + AluSx SINE Alu 1 368 0 945 224 35 9 chr1 12114391 12114619 -230549734 - AluJb SINE Alu -18 294 61 1995 150 0 0 chr1 12114706 12115012 -230549341 - AluSx SINE Alu -2 310 5 2577 116 122 59 chr1 12115083 12115227 -230549126 + LTR61 LTR ERV1 1 135 -460 221 0 35 0 chr1 12115227 12115256 -230549097 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2577 116 122 59 chr1 12115256 12115670 -230548683 + LTR61 LTR ERV1 135 594 -1 6726 195 39 15 chr1 12115670 12117376 -230546977 + HERV15 LTR ERV1 1 1648 -6778 487 160 20 10 chr1 12117381 12117481 -230546872 + LTR5 LTR ERVK 868 968 -1 14841 181 15 15 chr1 12117483 12119621 -230544732 + HERV3 LTR ERV1 3701 5842 -2584 1914 126 3 23 chr1 12119621 12119931 -230544422 - AluY SINE Alu -7 304 1 14841 181 15 15 chr1 12119931 12120315 -230544038 + HERV3 LTR ERV1 5842 6224 -2202 1462 142 9 0 chr1 12120315 12120541 -230543812 - AluSg SINE Alu -82 228 1 282 319 26 0 chr1 12120541 12120657 -230543696 - Tigger6 DNA MER2_type -365 1232 1114 228 289 11 0 chr1 12120925 12121015 -230543338 + (TAG)n Simple_repeat Simple_repeat 1 91 0 444 82 0 0 chr1 12121952 12122013 -230542340 + (TA)n Simple_repeat Simple_repeat 2 62 0 289 247 21 10 chr1 12122026 12122123 -230542230 - GSATX Satellite centromeric -120 98 1 * 919 213 37 18 chr1 12122038 12123440 -230540913 - GSATII Satellite centromeric -7 1427 1 * 1577 198 38 3 chr1 12123438 12123729 -230540624 - MER52A LTR ERV1 -71 1207 1099 321 314 16 24 chr1 12123773 12123897 -230540456 - MER52A LTR ERV1 -1582 173 51 1432 203 3 3 chr1 12124608 12124903 -230539450 + AluSx SINE Alu 18 312 0 645 193 0 0 chr1 12125318 12125432 -230538921 + AluJb SINE Alu 3 116 -196 383 172 5 3 chr1 12128886 12129078 -230535275 + AluSx SINE Alu 3 248 -52 817 209 14 19 chr1 12129078 12129111 -230535242 + AluSg/x SINE Alu 83 115 -194 324 0 0 0 chr1 12129111 12129147 -230535206 + (TAA)n Simple_repeat Simple_repeat 2 37 0 817 209 14 19 chr1 12129147 12129328 -230535025 + AluSg/x SINE Alu 115 296 -13 370 178 0 4 chr1 12129384 12129459 -230534894 + AluS SINE Alu 6 58 -245 29 0 0 0 chr1 12129799 12129828 -230534525 + AT_rich Low_complexity Low_complexity 1 29 0 333 283 44 18 chr1 12129842 12129955 -230534398 + L1M4 LINE L1 2927 3042 -3104 1502 211 3 10 chr1 12131420 12131724 -230532629 + AluJb SINE Alu 1 302 -10 237 65 0 0 chr1 12131724 12131755 -230532598 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 1032 42 60 0 chr1 12131778 12131945 -230532408 + GA-rich Low_complexity Low_complexity 4 180 0 3295 192 3 7 chr1 12132792 12133395 -230530958 + HERVE LTR ERV1 983 1583 -6230 445 167 0 0 chr1 12133602 12133668 -230530685 - AluS SINE Alu -243 67 2 650 311 57 36 chr1 12133680 12133822 -230530531 + L1M4 LINE L1 3581 3719 -2427 1781 162 33 0 chr1 12133822 12134124 -230530229 - AluSx SINE Alu 0 312 1 650 311 57 36 chr1 12134124 12134189 -230530164 + L1M4 LINE L1 3719 3781 -2365 2067 129 3 0 chr1 12134189 12134499 -230529854 + AluSp SINE Alu 1 311 -2 650 311 57 36 chr1 12134499 12134676 -230529677 + L1M4 LINE L1 3781 3974 -2172 529 268 71 94 chr1 12134800 12134869 -230529484 + MIR SINE MIR 15 84 -178 1583 88 5 0 chr1 12134869 12135085 -230529268 + AluY SINE Alu 82 298 -13 529 268 71 94 chr1 12135085 12135269 -230529084 + MIR SINE MIR 84 262 0 1941 135 3 0 chr1 12135381 12135677 -230528676 + AluSx SINE Alu 1 297 -15 1802 152 14 0 chr1 12136335 12136625 -230527728 - AluSg SINE Alu -16 294 1 857 214 34 15 chr1 12137560 12137903 -230526450 + GSATII Satellite centromeric 1 349 -60 1686 138 4 0 chr1 12137903 12138164 -230526189 + AluSp SINE Alu 50 311 -2 318 263 98 8 chr1 12138188 12138321 -230526032 + L1M4 LINE L1 3808 3952 -2194 805 147 0 63 chr1 12140061 12140204 -230524149 - AluJo SINE Alu -170 142 9 1767 161 23 0 chr1 12140329 12140634 -230523719 + AluSx SINE Alu 1 312 0 225 0 0 0 chr1 12140634 12140659 -230523694 + (GA)n Simple_repeat Simple_repeat 2 26 0 818 188 0 0 chr1 12141085 12141229 -230523124 - AluSg/x SINE Alu -29 283 140 1280 185 3 100 chr1 12141310 12141529 -230522824 - AluJb SINE Alu 0 312 136 1493 182 0 21 chr1 12141529 12141815 -230522538 + AluSx SINE Alu 13 292 -20 1280 185 3 100 chr1 12141815 12141936 -230522417 - AluJb SINE Alu -176 136 5 1747 164 7 0 chr1 12142509 12142819 -230521534 + AluSx SINE Alu 1 312 0 2904 206 45 2 chr1 12143187 12143765 -230520588 + LTR26 LTR ERV1 1 603 0 671 209 81 24 chr1 12143900 12144111 -230520242 + MER65A LTR ERV1 211 433 -12 1632 167 86 134 chr1 12144257 12144802 -230519551 + LTR44 LTR ERV1 1 519 0 250 247 34 22 chr1 12145601 12145690 -230518663 - MER110-int LTR ERV1 -1383 6154 6065 274 112 49 55 chr1 12145870 12145945 -230518408 - LTR45B LTR ERV1 0 525 412 1940 147 14 0 chr1 12145953 12146238 -230518115 + AluSg SINE Alu 1 289 -21 254 343 68 43 chr1 12146255 12146535 -230517818 - MER110-int LTR ERV1 -2209 2438 2152 247 237 17 0 chr1 12146850 12146909 -230517444 + MER94 DNA DNA 13 72 -62 1920 146 3 0 chr1 12146918 12147206 -230517147 - AluSx SINE Alu -23 289 1 802 185 20 20 chr1 12147447 12147598 -230516755 - AluJb SINE Alu -19 293 143 3037 194 18 10 chr1 12147598 12148216 -230516137 + LTR5 LTR ERVK 1 623 -346 616 174 30 8 chr1 12148336 12148468 -230515885 + LTR5 LTR ERVK 835 969 0 1758 166 0 3 chr1 12148497 12148780 -230515573 + AluSx SINE Alu 1 282 -30 783 172 0 0 chr1 12148794 12148916 -230515437 - FLAM_C SINE Alu -17 126 5 1766 161 14 0 chr1 12151223 12151509 -230512844 + AluSx SINE Alu 1 290 -22 27 0 0 0 chr1 12151666 12151693 -230512660 + AT_rich Low_complexity Low_complexity 1 27 0 2963 193 60 2 chr1 12151887 12152457 -230511896 + LTR26 LTR ERV1 1 603 0 508 243 97 5 chr1 12152592 12152777 -230511576 + MER65A LTR ERV1 211 412 -33 1507 168 91 131 chr1 12152954 12153495 -230510858 + LTR44 LTR ERV1 1 519 0 1851 189 46 8 chr1 12253797 12254168 -230410185 + MSTB1 LTR MaLR 48 432 0 187 189 27 0 chr1 12254420 12254457 -230409896 - L2 LINE L2 0 3272 3235 377 316 59 21 chr1 12254567 12254754 -230409599 + MIR SINE MIR 23 216 -46 930 142 0 0 chr1 12254988 12255115 -230409238 + FLAM_C SINE Alu 1 127 -6 369 240 75 20 chr1 12255247 12255393 -230408960 + L2 LINE L2 2740 2893 -421 267 300 92 8 chr1 12255578 12255698 -230408655 + L2 LINE L2 3136 3265 -7 7655 26 5 0 chr1 12255879 12257205 -230407148 - L1PA4 LINE L1 -5 6150 4820 203 309 0 62 chr1 12257300 12257381 -230406972 + L2 LINE L2 3195 3270 -2 1888 184 7 0 chr1 12257387 12257697 -230406656 + AluJb SINE Alu 1 312 0 305 348 0 0 chr1 12257909 12257998 -230406355 - MIR SINE MIR -118 144 56 391 221 13 0 chr1 12258226 12258303 -230406050 + MIR SINE MIR 32 109 -153 878 201 66 108 chr1 12258370 12258945 -230405408 + MER34B LTR ERV1 1 514 -28 1658 116 162 12 chr1 12259238 12259497 -230404856 - AluSg1 SINE Alu -11 298 1 194 211 0 0 chr1 12259503 12259541 -230404812 - L2 LINE L2 -570 2744 2707 836 214 0 0 chr1 12259661 12259806 -230404547 + AluJb SINE Alu 148 292 -20 1989 259 31 22 chr1 12259856 12260504 -230403849 + L1M4 LINE L1 997 1650 -4892 238 244 122 0 chr1 12260592 12260674 -230403679 + LTR10B LTR ERV1 194 285 -262 1215 204 40 25 chr1 12260737 12261012 -230403341 + LTR10B LTR ERV1 269 547 0 532 175 0 10 chr1 12261037 12261140 -230403213 + L1M4 LINE L1 4026 4127 -2517 * 1791 142 25 6 chr1 12261138 12261456 -230402897 + L1M4 LINE L1 5961 6284 -398 1589 130 13 74 chr1 12261460 12261759 -230402594 - MLT2B3 LTR ERVL 0 554 274 1951 121 24 34 chr1 12261905 12262203 -230402150 + AluSx SINE Alu 1 295 -17 1296 139 6 4 chr1 12262212 12262443 -230401910 + L1M3 LINE L1 5579 5819 -361 228 250 0 16 chr1 12262443 12262507 -230401846 + MLT1F1 LTR MaLR 110 172 -395 242 107 143 0 chr1 12262568 12262624 -230401729 + MLT1F1 LTR MaLR 176 239 -328 2610 112 18 0 chr1 12262970 12263353 -230401000 - L1PA15 LINE L1 -2 6163 5774 970 238 42 45 chr1 12263521 12263738 -230400615 + MLT1F1 LTR MaLR 283 500 -67 2615 41 3 28 chr1 12263738 12264057 -230400296 - AluY SINE Alu 0 311 1 970 238 42 45 chr1 12264057 12264125 -230400228 + MLT1F1 LTR MaLR 500 567 0 1917 176 13 3 chr1 12264178 12264485 -230399868 - AluJb SINE Alu -2 310 1 2318 112 0 3 chr1 12264749 12265062 -230399291 + AluSq SINE Alu 1 312 -1 3379 90 2 5 chr1 12265154 12265599 -230398754 + MLT2A1 LTR ERVL 1 444 0 1772 176 10 21 chr1 12265724 12266014 -230398339 + AluJo SINE Alu 13 299 -13 3038 303 43 22 chr1 12266029 12267232 -230397121 + ERVL LTR ERVL 1595 2823 -2941 414 305 108 65 chr1 12267349 12267661 -230396692 - LTR41 LTR ERVL -333 440 110 2375 85 0 13 chr1 12267661 12267967 -230396386 + AluY SINE Alu 1 302 -9 414 305 108 65 chr1 12267967 12268005 -230396348 - LTR41 LTR ERVL -663 110 75 269 172 0 47 chr1 12268006 12268070 -230396283 - LTR40b LTR ERVL 0 462 402 1036 241 53 8 chr1 12268095 12268360 -230395993 - LTR40b LTR ERVL -33 429 153 5857 88 8 13 chr1 12268379 12269233 -230395120 - L1PA8 LINE L1 0 6172 5323 4838 111 3 1 chr1 12269230 12269980 -230394373 + L1P LINE L1 4516 5266 -880 * 813 229 28 0 chr1 12269987 12270166 -230394187 - LTR40a LTR ERVL -331 188 5 841 193 32 27 chr1 12270170 12270357 -230393996 - HERVL40 LTR ERVL 0 5530 5343 459 248 26 0 chr1 12270370 12270487 -230393866 - HERVL68 LTR ERVL -135 2902 2783 269 261 14 109 chr1 12270719 12270778 -230393575 - HERVL68 LTR ERVL -328 2709 2669 1667 188 0 58 chr1 12270778 12271108 -230393245 + AluJb SINE Alu 2 312 0 269 261 14 109 chr1 12271108 12271186 -230393167 - HERVL68 LTR ERVL -368 2669 2585 2986 312 47 7 chr1 12271234 12271311 -230393042 - ERVL LTR ERVL -2591 3173 3101 189 0 0 0 chr1 12271311 12271332 -230393021 + (CAGG)n Simple_repeat Simple_repeat 1 21 0 2986 312 47 7 chr1 12271332 12272397 -230391956 - ERVL LTR ERVL -2663 3101 1985 234 143 71 0 chr1 12272535 12272577 -230391776 + LTR50 LTR ERVL 751 795 0 2073 227 84 49 chr1 12272831 12273404 -230390949 + MLT1E LTR MaLR 1 593 0 2319 99 0 3 chr1 12273808 12274100 -230390253 + AluSg SINE Alu 6 296 -14 249 219 193 35 chr1 12275730 12275844 -230388509 - MIR SINE MIR -50 212 81 2491 68 0 10 chr1 12276092 12276403 -230387950 + AluY SINE Alu 1 308 -3 872 174 0 28 chr1 12276410 12276554 -230387799 + AluJb SINE Alu 126 265 -47 2165 106 36 0 chr1 12276959 12277260 -230387093 + AluSx SINE Alu 1 312 0 1774 181 31 17 chr1 12278025 12278379 -230385974 + MLT1A1 LTR MaLR 5 363 -2 217 159 23 23 chr1 12278829 12278873 -230385480 - MIR SINE MIR -86 122 79 260 242 29 117 chr1 12279389 12279629 -230384724 - L1ME1 LINE L1 -247 5919 5701 715 253 18 6 chr1 12280329 12280495 -230383858 + MER5B DNA MER1_type 1 168 -10 497 208 110 87 chr1 12280622 12280687 -230383666 - MER5B DNA MER1_type -1 177 115 2395 75 0 0 chr1 12280687 12280965 -230383388 + AluSg SINE Alu 13 290 -20 497 208 110 87 chr1 12280965 12281072 -230383281 - MER5B DNA MER1_type -63 115 1 326 282 141 81 chr1 12281116 12281200 -230383153 + L2 LINE L2 2873 2950 -322 1296 183 88 45 chr1 12281200 12281369 -230382984 + MER96B DNA MER1_type 2 162 -255 2008 125 0 34 chr1 12281369 12281499 -230382854 + AluJo SINE Alu 1 134 -178 1965 162 3 0 chr1 12281499 12281796 -230382557 + AluJb SINE Alu 1 298 -14 2008 125 0 34 chr1 12281796 12281961 -230382392 + AluJo SINE Alu 134 286 -26 1296 183 88 45 chr1 12281961 12282189 -230382164 + MER96B DNA MER1_type 162 416 -1 326 282 141 81 chr1 12282189 12282402 -230381951 + L2 LINE L2 2950 3188 -84 237 222 0 0 chr1 12282584 12282647 -230381706 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 254 289 139 36 chr1 12282667 12282833 -230381520 - L2 LINE L2 -56 3257 3075 217 213 29 52 chr1 12282833 12282969 -230381384 + (CAGGG)n Simple_repeat Simple_repeat 1 133 0 2202 130 0 0 chr1 12283058 12283358 -230380995 + AluSx SINE Alu 1 300 -12 949 117 28 16 chr1 12283358 12283611 -230380742 + GA-rich Low_complexity Low_complexity 1 257 0 3204 136 18 10 chr1 12283672 12284180 -230380173 + MER41E LTR ERV1 1 512 0 2068 150 7 7 chr1 12284441 12284748 -230379605 - AluJb SINE Alu -5 307 1 525 306 40 34 chr1 12285496 12285742 -230378611 + MER41E-int LTR ERV1 694 1627 -4012 423 292 7 7 chr1 12285741 12285878 -230378475 + MER41E-int LTR ERV1 2512 2648 -4028 * 561 293 74 30 chr1 12286024 12286417 -230377936 + MER41E-int LTR ERV1 2605 3014 -1784 2146 163 40 36 chr1 12286527 12286999 -230377354 - LTR22B LTR ERVK -18 474 1 699 322 62 35 chr1 12287226 12288003 -230376350 + MER41E-int LTR ERV1 2708 3896 -3195 648 299 26 11 chr1 12288034 12288302 -230376051 + MER41E-int LTR ERV1 6158 6429 -247 266 120 120 0 chr1 12288309 12288359 -230375994 + MADE1 DNA Mariner 25 80 0 487 205 105 54 chr1 12288359 12288598 -230375755 + MER41E-int LTR ERV1 6426 6676 0 3008 138 53 0 chr1 12288684 12289170 -230375183 + MER41E LTR ERV1 1 512 0 413 302 149 50 chr1 12289178 12289484 -230374869 - L2 LINE L2 -233 3039 2765 2295 65 41 24 chr1 12289484 12289778 -230374575 + AluY SINE Alu 1 299 -12 413 302 149 50 chr1 12289778 12289996 -230374357 - L2 LINE L2 -507 2765 2466 2372 93 0 3 chr1 12290776 12291086 -230373267 + AluSc SINE Alu 1 309 0 307 272 62 12 chr1 12291127 12291208 -230373145 - MIR SINE MIR -170 92 8 237 308 140 9 chr1 12291821 12291928 -230372425 - L2 LINE L2 -24 3248 3128 576 273 126 27 chr1 12291953 12292195 -230372158 + MIR SINE MIR 1 261 -1 264 77 0 0 chr1 12292700 12292739 -230371614 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 778 146 0 0 chr1 12292743 12292866 -230371487 - FRAM SINE Alu -17 159 37 2170 123 0 3 chr1 12293029 12293321 -230371032 + AluJb SINE Alu 11 301 -11 248 238 50 12 chr1 12293325 12293405 -230370948 - L1ME4a LINE L1 -197 5924 5842 568 246 0 16 chr1 12293665 12293791 -230370562 + MIR SINE MIR 25 148 -114 217 305 76 23 chr1 12293830 12293961 -230370392 + L2 LINE L2 3114 3251 -62 301 291 112 8 chr1 12294153 12294287 -230370066 + MIR SINE MIR 36 183 -79 561 192 0 0 chr1 12295067 12295606 -230368747 + (CA)n Simple_repeat Simple_repeat 1 539 0 207 0 0 0 chr1 12295907 12295930 -230368423 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 2481 79 0 22 chr1 12296485 12296800 -230367553 + AluY SINE Alu 1 308 -3 452 123 0 0 chr1 12296729 12296802 -230367551 + Alu SINE Alu 238 310 -1 433 196 30 68 chr1 12297201 12297334 -230367019 - L1ME4a LINE L1 -37 6084 5957 508 271 94 30 chr1 12297395 12297598 -230366755 + MIR SINE MIR 21 236 -26 1964 166 0 3 chr1 12297837 12298139 -230366214 - AluJb SINE Alu -3 309 9 1536 213 10 3 chr1 12298161 12298461 -230365892 - AluSx SINE Alu -4 308 7 290 287 0 26 chr1 12298617 12298732 -230365621 + (TGAA)n Simple_repeat Simple_repeat 1 112 0 216 222 7 37 chr1 12298742 12298877 -230365476 + (TGGA)n Simple_repeat Simple_repeat 4 134 0 1864 164 3 17 chr1 12300489 12300788 -230363565 + AluJo SINE Alu 1 295 -17 224 341 144 0 chr1 12301498 12301665 -230362688 - MIR SINE MIR -12 250 60 2285 107 10 0 chr1 12301843 12302142 -230362211 + AluSx SINE Alu 1 302 -10 1845 146 3 33 chr1 12302997 12303298 -230361055 + AluJb SINE Alu 1 292 -20 715 325 44 14 chr1 12303467 12303762 -230360591 + L1ME2 LINE L1 5850 6153 -11 1596 91 10 0 chr1 12303762 12303991 -230360362 - AluSg/x SINE Alu 0 313 83 1751 110 0 9 chr1 12353991 12354252 -230310101 + AluSc SINE Alu 59 309 0 858 164 48 36 chr1 12354252 12354417 -230309936 + AluSg/x SINE Alu 134 300 -12 2245 114 3 0 chr1 12354427 12354735 -230309618 - AluSq SINE Alu -4 309 1 26 0 0 0 chr1 12354740 12354766 -230309587 + AT_rich Low_complexity Low_complexity 1 26 0 248 222 0 69 chr1 12354821 12354893 -230309460 + L2 LINE L2 3246 3312 -1 639 315 56 80 chr1 12355242 12355674 -230308679 - L1ME4a LINE L1 -224 5897 5477 1203 185 101 47 chr1 12355674 12355950 -230308403 + AluJo SINE Alu 3 293 -19 639 315 56 80 chr1 12355950 12356031 -230308322 - L1ME4a LINE L1 -644 5477 5396 361 0 41 0 chr1 12356595 12356644 -230307709 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1672 183 29 13 chr1 12356647 12356953 -230307400 - AluJo SINE Alu -1 311 1 426 284 50 28 chr1 12357585 12357726 -230306627 - L2 LINE L2 0 3272 3129 433 309 45 113 chr1 12357729 12358111 -230306242 - L2 LINE L2 -3 3269 2914 394 256 51 8 chr1 12358902 12359019 -230305334 + MIR SINE MIR 24 145 -117 500 267 47 17 chr1 12359231 12359403 -230304950 - MIR SINE MIR -70 192 16 475 201 113 96 chr1 12360205 12360249 -230304104 - MLT1H1 LTR MaLR -21 534 492 1718 162 36 16 chr1 12360249 12360552 -230303801 + AluJo SINE Alu 3 311 -1 475 201 113 96 chr1 12360552 12360736 -230303617 - MLT1H1 LTR MaLR -63 492 302 241 217 140 25 chr1 12360818 12360975 -230303378 - MLT1H1 LTR MaLR -249 300 126 306 0 0 0 chr1 12361081 12361115 -230303238 + (CA)n Simple_repeat Simple_repeat 2 35 0 279 276 106 57 chr1 12361223 12361234 -230303119 - MIR SINE MIR 0 262 253 1739 148 36 18 chr1 12361234 12361538 -230302815 + AluJb SINE Alu 1 309 0 279 276 106 57 chr1 12361538 12361648 -230302705 - MIR SINE MIR -9 253 134 283 289 67 40 chr1 12361671 12361820 -230302533 - MLT1J2 LTR MaLR -26 424 272 1112 251 30 8 chr1 12361924 12362191 -230302162 + LTR33 LTR ERVL 7 279 -242 227 308 22 0 chr1 12362229 12362320 -230302033 + LTR33 LTR ERVL 389 481 -40 2102 254 152 21 chr1 12362368 12362951 -230301402 - L2 LINE L2 -654 2660 1958 2360 102 0 0 chr1 12362951 12363254 -230301099 + AluY SINE Alu 1 303 -8 2102 254 152 21 chr1 12363254 12363414 -230300939 - L2 LINE L2 -1356 1958 1820 619 374 20 6 chr1 12363414 12363756 -230300597 + L1MC4a LINE L1 761 1107 -6015 611 224 59 44 chr1 12363846 12364203 -230300150 + L1MC4a LINE L1 1297 1533 -4890 675 145 111 8 chr1 12364231 12364348 -230300005 - FLAM_C SINE Alu -14 129 1 2136 273 78 22 chr1 12364348 12365001 -230299352 + L1MC4a LINE L1 1732 2347 -4775 1927 149 0 4 chr1 12365001 12365282 -230299071 + AluJb SINE Alu 1 280 -32 234 0 0 0 chr1 12365284 12365310 -230299043 + (CA)n Simple_repeat Simple_repeat 2 27 0 2136 273 78 22 chr1 12365310 12365346 -230299007 + L1MC4a LINE L1 2347 2380 -4742 2612 63 0 0 chr1 12365346 12365648 -230298705 + AluY SINE Alu 1 302 -9 2136 273 78 22 chr1 12365648 12365739 -230298614 + L1MC4a LINE L1 2380 2464 -4658 2453 100 0 0 chr1 12365739 12366048 -230298305 + AluSx SINE Alu 1 309 -3 2136 273 78 22 chr1 12366048 12366320 -230298033 + L1MC4a LINE L1 2464 2849 -4273 786 237 5 11 chr1 12366327 12366513 -230297840 + L1MC1 LINE L1 6149 6333 0 * 807 235 121 18 chr1 12366512 12366971 -230297382 + L1MC4a LINE L1 2826 3284 -3657 1845 174 0 0 chr1 12366971 12367252 -230297101 + AluJb SINE Alu 1 281 -31 2093 152 40 45 chr1 12367252 12367800 -230296553 + MLT2A2 LTR ERVL 2 554 0 390 288 14 14 chr1 12367817 12367963 -230296390 + L1MC4a LINE L1 3270 3415 -3526 391 264 62 115 chr1 12367963 12368034 -230296319 - L2 LINE L2 -1484 1830 1757 2189 125 3 3 chr1 12368034 12368346 -230296007 + AluSx SINE Alu 1 312 0 391 264 62 115 chr1 12368346 12368596 -230295757 - L2 LINE L2 -1557 1757 1526 21 36 0 0 chr1 12368839 12368867 -230295486 + AT_rich Low_complexity Low_complexity 1 28 0 1109 257 115 35 chr1 12368927 12368946 -230295407 + L1MC4a LINE L1 6107 6123 -2480 2201 111 3 10 chr1 12368946 12369252 -230295101 + AluSx SINE Alu 1 304 -8 1109 257 115 35 chr1 12369252 12369719 -230294634 + L1MC4a LINE L1 6123 6632 -1971 486 98 0 12 chr1 12369723 12369805 -230294548 + HY3 scRNA scRNA 21 101 0 315 164 164 0 chr1 12369810 12369877 -230294476 + L1MC4a LINE L1 6606 6683 -1920 2321 105 6 19 chr1 12369916 12370230 -230294123 + AluSx SINE Alu 1 310 -2 312 321 79 0 chr1 12370264 12370404 -230293949 - L2 LINE L2 -1501 1813 1663 2191 99 0 51 chr1 12371105 12371418 -230292935 - AluSg SINE Alu -12 298 2 847 239 52 15 chr1 12372630 12372898 -230291455 + MER33 DNA MER1_type 1 278 -46 2348 94 0 0 chr1 12372902 12373227 -230291126 - AluSg SINE Alu 0 325 1 1704 154 27 27 chr1 12373229 12373528 -230290825 - AluJo SINE Alu -13 299 1 491 157 11 0 chr1 12373560 12373649 -230290704 - AluSx SINE Alu -7 302 213 1034 123 0 39 chr1 12373649 12373803 -230290550 - AluSx SINE Alu -143 169 22 354 288 27 0 chr1 12373842 12373953 -230290400 + MLT2E LTR ERVL 20 133 -495 1343 123 0 0 chr1 12374859 12375066 -230289287 + AluSg/x SINE Alu 106 312 0 2413 83 3 0 chr1 12375188 12375488 -230288865 - AluY SINE Alu -10 301 1 362 224 43 9 chr1 12375652 12375768 -230288585 - L1ME2 LINE L1 -279 5885 5766 * 944 258 70 21 chr1 12375766 12376095 -230288258 - L1ME2 LINE L1 -2505 3641 3297 411 234 53 35 chr1 12376126 12376297 -230288056 + HAL1 LINE L1 2224 2397 -110 2496 71 3 0 chr1 12376711 12377005 -230287348 + AluSp SINE Alu 2 296 -17 2349 104 0 0 chr1 12377178 12377486 -230286867 - AluSx SINE Alu -4 308 1 2043 184 105 77 chr1 12377676 12377760 -230286593 - MER97a DNA MER1_type? -208 686 606 2222 95 7 20 chr1 12377760 12378056 -230286297 - AluSx SINE Alu -20 292 1 2043 184 105 77 chr1 12378056 12378096 -230286257 - MER97a DNA MER1_type? -288 606 569 2140 132 6 10 chr1 12378096 12378407 -230285946 + AluSq SINE Alu 1 310 -3 2043 184 105 77 chr1 12378407 12378948 -230285405 - MER97a DNA MER1_type? -325 569 1 384 304 184 22 chr1 12378975 12379161 -230285192 + L2 LINE L2 1790 1945 -1369 2447 68 0 10 chr1 12379161 12379457 -230284896 - AluY SINE Alu -18 293 1 384 304 184 22 chr1 12379457 12379635 -230284718 + L2 LINE L2 1945 2213 -1101 304 313 224 33 chr1 12379639 12379679 -230284674 + L2 LINE L2 2430 2461 -853 1632 175 6 46 chr1 12379679 12380004 -230284349 - AluJb SINE Alu 0 312 1 304 313 224 33 chr1 12380004 12380423 -230283930 + L2 LINE L2 2461 2977 -337 272 289 29 10 chr1 12380483 12380587 -230283766 + L2 LINE L2 3184 3289 -24 1268 278 100 68 chr1 12381452 12381484 -230282869 + L1M4 LINE L1 2678 2708 -3438 2290 98 0 7 chr1 12381484 12381781 -230282572 - AluSg SINE Alu -15 295 1 1268 278 100 68 chr1 12381781 12381837 -230282516 + L1M4 LINE L1 2708 2761 -3385 1847 130 55 3 chr1 12381837 12382130 -230282223 - AluJb SINE Alu -4 308 1 1268 278 100 68 chr1 12382130 12382224 -230282129 + L1M4 LINE L1 2761 2851 -3295 2047 100 21 7 chr1 12382224 12382503 -230281850 + AluSx SINE Alu 1 283 -29 387 0 0 0 chr1 12382504 12382547 -230281806 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1268 278 100 68 chr1 12382547 12383177 -230281176 + L1M4 LINE L1 2851 3459 -2687 2088 116 3 20 chr1 12383177 12383479 -230280874 + AluSx SINE Alu 3 299 -13 1268 278 100 68 chr1 12383479 12383492 -230280861 + L1M4 LINE L1 3459 3470 -2676 1726 161 4 7 chr1 12383492 12383772 -230280581 + AluJo SINE Alu 14 292 -20 2455 76 0 13 chr1 12383772 12384075 -230280278 + AluY SINE Alu 1 300 -11 2459 62 0 0 chr1 12384079 12384368 -230279985 + AluY SINE Alu 1 289 -22 1268 278 100 68 chr1 12384368 12384527 -230279826 + L1M4 LINE L1 3472 3677 -2469 1895 155 0 34 chr1 12384527 12384849 -230279504 + AluJo SINE Alu 1 311 -1 263 213 41 127 chr1 12384884 12385128 -230279225 + L1M4 LINE L1 3741 3963 -2183 359 344 93 49 chr1 12385342 12385749 -230278604 + L1MC4a LINE L1 5674 6098 -1710 1387 167 80 12 chr1 12385781 12386032 -230278321 - AluJo SINE Alu -22 290 23 932 292 135 15 chr1 12386725 12387126 -230277227 + L2 LINE L2 1120 1568 -1746 777 278 93 4 chr1 12387134 12387393 -230276960 + L2 LINE L2 1801 2082 -1232 1194 84 12 24 chr1 12387393 12387592 -230276761 - AluSq SINE Alu 0 314 118 955 103 0 0 chr1 12387694 12387810 -230276543 - AluY SINE Alu -195 116 1 294 50 0 0 chr1 12389589 12389629 -230274724 + (CA)n Simple_repeat Simple_repeat 1 40 0 25 0 0 0 chr1 12389795 12389820 -230274533 + AT_rich Low_complexity Low_complexity 1 25 0 188 224 138 0 chr1 12391414 12391435 -230272918 - MER5B DNA MER1_type -97 81 64 1922 84 78 35 chr1 12391435 12391719 -230272634 - AluSg SINE Alu -14 296 1 188 224 138 0 chr1 12391719 12391755 -230272598 - MER5B DNA MER1_type -114 64 16 243 343 27 0 chr1 12392345 12392418 -230271935 + MIR SINE MIR 31 105 -157 191 230 100 80 chr1 12392751 12392851 -230271502 - MIR SINE MIR -79 183 82 299 326 133 6 chr1 12393754 12393935 -230270418 - L3 LINE CR1 -124 1453 1250 27 49 0 0 chr1 12395959 12396000 -230268353 + AT_rich Low_complexity Low_complexity 1 41 0 909 127 0 15 chr1 12396659 12396793 -230267560 + FLAM_C SINE Alu 1 132 -1 257 380 86 16 chr1 12397710 12397965 -230266388 + L2 LINE L2 2381 2653 -661 333 311 136 80 chr1 12398124 12398513 -230265840 + L2 LINE L2 2848 3258 -14 1590 140 38 0 chr1 12399084 12399320 -230265033 - AluJb SINE Alu -25 287 43 661 111 10 0 chr1 12399322 12399421 -230264932 + FLAM_C SINE Alu 33 132 -11 24 0 0 0 chr1 12399937 12399961 -230264392 + AT_rich Low_complexity Low_complexity 1 24 0 382 318 0 0 chr1 12400846 12400956 -230263397 - L2 LINE L2 -17 3296 3187 1502 211 48 15 chr1 12401188 12401525 -230262828 + MLT1A2 LTR MaLR 23 370 -4 427 321 64 21 chr1 12402821 12403008 -230261345 + MIR SINE MIR 49 243 -19 331 238 138 92 chr1 12404500 12404685 -230259668 + L2 LINE L2 2512 2712 -602 2318 71 3 32 chr1 12404685 12404993 -230259360 + AluY SINE Alu 1 299 -12 331 238 138 92 chr1 12404993 12405047 -230259306 + L2 LINE L2 2712 2762 -552 239 305 76 29 chr1 12405061 12405166 -230259187 + L2 LINE L2 3172 3281 -32 2405 64 20 3 chr1 12406641 12406936 -230257417 - AluY SINE Alu -11 300 1 23 0 0 0 chr1 12406941 12406964 -230257389 + AT_rich Low_complexity Low_complexity 1 23 0 807 269 100 23 chr1 12407294 12407643 -230256710 - L1ME3A LINE L1 -310 5860 5485 562 180 11 0 chr1 12407650 12407739 -230256614 + Charlie5 DNA MER1_type 3 92 -2520 24 32 0 0 chr1 12407871 12407902 -230256451 + AT_rich Low_complexity Low_complexity 1 31 0 1031 226 68 16 chr1 12410172 12410420 -230253933 + MIR SINE MIR 2 262 0 198 0 0 0 chr1 12411450 12411472 -230252881 + (T)n Simple_repeat Simple_repeat 1 22 0 414 214 0 0 chr1 12411472 12411542 -230252811 - AluJ/FLAM SINE Alu -241 71 2 418 288 124 17 chr1 12411661 12411894 -230252459 + MIR SINE MIR 1 258 -4 2429 81 0 10 chr1 12412507 12412814 -230251539 - AluSg SINE Alu -6 304 1 190 310 11 35 chr1 12413199 12413286 -230251067 + L2 LINE L2 3205 3289 -24 214 316 0 0 chr1 12415138 12415195 -230249158 + (CA)n Simple_repeat Simple_repeat 2 58 0 2469 72 3 0 chr1 12416120 12416424 -230247929 - AluSg SINE Alu -5 305 1 304 221 80 63 chr1 12416662 12416865 -230247488 + L1ME4a LINE L1 5295 5493 -671 759 260 130 25 chr1 12416935 12417250 -230247103 + L1ME4a LINE L1 5485 5832 -289 351 105 0 63 chr1 12417326 12417421 -230246932 + (TA)n Simple_repeat Simple_repeat 2 90 0 289 217 87 0 chr1 12417498 12417590 -230246763 + MIR SINE MIR 124 223 -39 700 271 6 0 chr1 12420463 12420644 -230243709 + MIR SINE MIR 8 189 -73 186 71 0 0 chr1 12424225 12424253 -230240100 + (T)n Simple_repeat Simple_repeat 1 28 0 249 367 23 16 chr1 12424823 12424951 -230239402 - MIR SINE MIR -59 149 21 296 286 115 36 chr1 12426493 12426685 -230237668 - MIR SINE MIR -9 253 47 463 272 174 53 chr1 12427436 12427815 -230236538 + HAL1 LINE L1 1 425 -2082 611 236 67 45 chr1 12427847 12428025 -230236328 + HAL1 LINE L1 742 923 -1584 527 250 28 68 chr1 12428283 12428531 -230235822 + HAL1 LINE L1 1984 2221 -286 439 218 55 74 chr1 12428555 12428757 -230235596 + HAL1 LINE L1 2304 2501 -6 2151 135 3 0 chr1 12428825 12429122 -230235231 - AluSx SINE Alu -14 298 1 862 174 26 0 chr1 12430668 12430823 -230233530 - Charlie1b DNA MER1_type -243 280 122 2209 123 0 7 chr1 12431083 12431391 -230232962 - AluJb SINE Alu -6 306 1 2213 124 0 0 chr1 12432672 12432971 -230231382 + AluSg SINE Alu 1 299 -11 2568 54 0 0 chr1 12433993 12434287 -230230066 - AluSc SINE Alu -15 294 1 262 271 27 75 chr1 12436249 12436386 -230227967 - MIR SINE MIR -62 146 16 1561 153 29 32 chr1 12436391 12436672 -230227681 - AluJo SINE Alu -32 280 1 332 234 204 50 chr1 12437540 12437717 -230226636 + MIR SINE MIR 37 237 -25 327 288 12 53 chr1 12437717 12437887 -230226466 + L2 LINE L2 2919 3081 -191 219 129 35 35 chr1 12439463 12439548 -230224805 + (TA)n Simple_repeat Simple_repeat 2 86 0 189 0 0 0 chr1 12440172 12440193 -230224160 + (A)n Simple_repeat Simple_repeat 1 21 0 2479 81 7 0 chr1 12440365 12440672 -230223681 + AluSc SINE Alu 1 309 0 1007 174 6 6 chr1 12440705 12440877 -230223476 + MER2 DNA MER2_type 2 173 -172 282 245 0 0 chr1 12440967 12441020 -230223333 + MER2 DNA MER2_type 268 320 -25 736 239 6 0 chr1 12441561 12441720 -230222633 - FRAM SINE Alu -6 160 1 2294 120 3 0 chr1 12443476 12443785 -230220568 - AluSx SINE Alu -2 310 1 1058 104 0 0 chr1 12443785 12443919 -230220434 - AluSg SINE Alu -176 134 1 258 194 0 14 chr1 12444200 12444243 -230220110 + (TTAAA)n Simple_repeat Simple_repeat 1 44 -27 1920 130 0 0 chr1 12444243 12444504 -230219849 - AluSx SINE Alu -51 261 1 258 194 0 14 chr1 12444504 12444532 -230219821 + (TTAAA)n Simple_repeat Simple_repeat 44 71 0 198 209 93 0 chr1 12444889 12444932 -230219421 - L2 LINE L2 -1 3271 3225 192 315 139 18 chr1 12445856 12446021 -230218332 + MIR SINE MIR 1 185 -77 279 284 0 0 chr1 12446234 12446301 -230218052 + MIR3 SINE MIR 131 197 -11 596 266 85 5 chr1 12448090 12448289 -230216064 + MIR SINE MIR 47 261 -1 1839 198 100 5 chr1 12449325 12449704 -230214649 - MER47B DNA MER2_type 0 418 4 222 348 11 11 chr1 12449887 12449979 -230214374 + MIR SINE MIR 50 141 -121 1918 138 7 3 chr1 12450008 12450298 -230214055 - AluSx SINE Alu -21 291 1 239 325 63 32 chr1 12451909 12452035 -230212318 + MIR SINE MIR 19 148 -60 452 210 34 67 chr1 12452676 12452795 -230211558 - MIR SINE MIR -21 241 127 2260 111 0 7 chr1 12453700 12454006 -230210347 - AluSg SINE Alu -6 304 1 831 261 162 29 chr1 12455487 12456000 -230208353 + L1MEc LINE L1 1083 1703 -4693 2120 119 23 0 chr1 12456000 12456302 -230208051 + AluSx SINE Alu 1 309 -3 831 261 162 29 chr1 12456302 12456443 -230207910 + L1MEc LINE L1 1703 1824 -4572 937 232 70 11 chr1 12456674 12456946 -230207407 + L1ME3A LINE L1 5664 5951 -219 1957 145 30 10 chr1 12457252 12457555 -230206798 + AluJb SINE Alu 1 309 -3 483 177 199 40 chr1 12457738 12457964 -230206389 + MER33 DNA MER1_type 4 265 -59 303 309 32 48 chr1 12458092 12458218 -230206135 + L1MEc LINE L1 1858 1981 -4415 184 246 108 0 chr1 12458772 12458837 -230205516 + L2 LINE L2 3230 3301 -12 2159 127 0 3 chr1 12458914 12459214 -230205139 + AluSq SINE Alu 1 299 -14 2140 135 0 6 chr1 12459235 12459547 -230204806 - AluSx SINE Alu -2 310 1 375 239 123 68 chr1 12460207 12460370 -230203983 + MIR SINE MIR 1 172 -90 201 138 0 0 chr1 12460377 12460406 -230203947 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 751 246 116 104 chr1 12460407 12460513 -230203840 - L2 LINE L2 -10 3303 3200 266 100 100 0 chr1 12460513 12460553 -230203800 + MLT1A2 LTR MaLR 1 44 -330 751 246 116 104 chr1 12460553 12461274 -230203079 - L2 LINE L2 -113 3200 2417 1703 141 121 47 chr1 12461639 12461979 -230202374 - MLT1A1 LTR MaLR 0 365 1 2479 72 3 0 chr1 12463173 12463480 -230200873 + AluSp SINE Alu 1 308 -5 283 264 73 0 chr1 12463980 12464090 -230200263 + L2 LINE L2 3183 3300 -13 762 254 143 5 chr1 12464451 12464660 -230199693 + MIR SINE MIR 18 255 -7 1371 192 15 23 chr1 12464663 12464929 -230199424 - AluJb SINE Alu -13 299 36 189 0 0 0 chr1 12466153 12466170 -230198183 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chr1 12466170 12466191 -230198162 + (CA)n Simple_repeat Simple_repeat 1 21 0 * 264 30 0 0 chr1 12466190 12466223 -230198130 + (TC)n Simple_repeat Simple_repeat 1 33 0 186 71 0 0 chr1 12466854 12466882 -230197471 + (T)n Simple_repeat Simple_repeat 1 28 0 1687 162 46 0 chr1 12467247 12467531 -230196822 + AluJb SINE Alu 2 298 -14 2329 96 3 3 chr1 12467726 12468029 -230196324 - AluSp SINE Alu -10 303 1 303 338 65 14 chr1 12468424 12468563 -230195790 - L2 LINE L2 -5 3267 3122 354 299 143 20 chr1 12468691 12468838 -230195515 + MIR3 SINE MIR 38 202 -6 310 288 47 65 chr1 12469513 12469683 -230194670 + MIR SINE MIR 46 212 -50 382 275 48 48 chr1 12469721 12469888 -230194465 + MIR SINE MIR 23 189 -73 186 239 43 0 chr1 12470357 12470403 -230193950 - L2 LINE L2 -19 3253 3206 2175 126 3 0 chr1 12470549 12470850 -230193503 + AluSq SINE Alu 1 302 -11 1990 176 20 12 chr1 12472378 12472719 -230191634 + MER2 DNA MER2_type 1 344 0 323 277 35 51 chr1 12472736 12472859 -230191494 + MIR SINE MIR 33 152 -101 467 33 16 0 chr1 12472859 12472920 -230191433 + (TAA)n Simple_repeat Simple_repeat 1 62 0 323 277 35 51 chr1 12472920 12472957 -230191396 + MIR SINE MIR 152 188 -65 2145 106 11 0 chr1 12473102 12473409 -230190944 - AluSq SINE Alu 0 310 1 191 179 0 0 chr1 12474368 12474407 -230189946 + MIR SINE MIR 112 150 -112 312 137 0 0 chr1 12474407 12474458 -230189895 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 2142 123 0 17 chr1 12474566 12474868 -230189485 - AluSx SINE Alu -15 297 1 384 253 47 47 chr1 12476863 12477013 -230187340 + MIR SINE MIR 59 208 -54 392 222 101 0 chr1 12477308 12477407 -230186946 + MIR SINE MIR 37 145 -117 1959 112 14 34 chr1 12478015 12478310 -230186043 + AluSx SINE Alu 1 289 -23 1255 169 257 7 chr1 12480089 12480361 -230183992 + MER7A DNA MER2_type 1 338 -8 2638 143 57 0 chr1 12480361 12480766 -230183587 + MSTA LTR MaLR 1 428 0 232 254 127 0 chr1 12481488 12481551 -230182802 - MIR SINE MIR -67 195 125 22 0 0 0 chr1 12481670 12481692 -230182661 + AT_rich Low_complexity Low_complexity 1 22 0 2095 132 3 7 chr1 12481938 12482248 -230182105 + AluSx SINE Alu 3 311 -1 233 332 155 26 chr1 12482917 12483110 -230181243 - L2 LINE L2 -533 2781 2564 1596 167 24 24 chr1 12483952 12484245 -230180108 - AluJb SINE Alu -19 293 1 1925 241 28 79 chr1 12485405 12485924 -230178429 - L1ME3A LINE L1 -1 6964 6491 1756 165 0 0 chr1 12485924 12486203 -230178150 - AluJb SINE Alu -33 279 1 1925 241 28 79 chr1 12486203 12486401 -230177952 - L1ME3A LINE L1 -474 6491 6284 823 161 0 0 chr1 12486433 12486557 -230177796 + FLAM_C SINE Alu 1 124 -19 424 309 21 38 chr1 12486739 12486975 -230177378 + AluJo SINE Alu 52 283 -29 1075 178 102 22 chr1 12487007 12487232 -230177121 - AluJb SINE Alu -45 267 25 206 125 21 0 chr1 12487253 12487301 -230177052 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 2900 263 46 17 chr1 12487356 12488380 -230175973 - L1ME3A LINE L1 -708 6257 5206 1384 279 37 23 chr1 12488381 12488881 -230175472 + MLT1H LTR MaLR 1 549 0 300 176 0 44 chr1 12488898 12488989 -230175364 + CT-rich Low_complexity Low_complexity 2 88 0 911 115 0 0 chr1 12488990 12489112 -230175241 - FLAM_C SINE Alu -19 124 3 1505 263 60 45 chr1 12489115 12489810 -230174543 - L1ME3A LINE L1 -1769 5172 4467 333 268 137 0 chr1 12489848 12490001 -230174352 - L1ME3A LINE L1 -4971 1452 1279 479 63 16 0 chr1 12491213 12491276 -230173077 + U3 snRNA snRNA 1 64 -153 326 262 87 0 chr1 12491451 12491554 -230172799 + L1M LINE L1 5269 5380 -2428 1957 133 14 4 chr1 12491800 12492078 -230172275 + AluJb SINE Alu 1 281 -31 195 42 0 0 chr1 12492123 12492147 -230172206 + (TC)n Simple_repeat Simple_repeat 2 25 0 192 343 0 61 chr1 12492376 12492475 -230171878 - MIR SINE MIR -110 152 60 1102 252 26 38 chr1 12495059 12495400 -230168953 + MER102b DNA MER1_type 2 338 -3 311 266 13 0 chr1 12495558 12495637 -230168716 + L3 LINE CR1 1309 1388 -189 288 284 0 15 chr1 12495788 12495855 -230168498 + MIR SINE MIR 3 68 -194 360 0 0 0 chr1 12499459 12499499 -230164854 + (TG)n Simple_repeat Simple_repeat 1 40 0 1644 168 11 15 chr1 12499515 12499789 -230164564 - AluJb SINE Alu -39 273 1 808 116 75 7 chr1 12500489 12500636 -230163717 + L1MA8 LINE L1 6120 6276 -15 2160 115 10 0 chr1 12500627 12500922 -230163431 - AluSp SINE Alu -15 298 1 282 277 0 0 chr1 12501117 12501182 -230163171 + L2 LINE L2 3208 3272 0 2107 102 3 3 chr1 12501479 12501792 -230162561 + AluSx SINE Alu 1 313 0 1200 237 6 44 chr1 12502279 12502596 -230161757 + L1M4 LINE L1 68 372 -6170 339 206 54 0 chr1 12502590 12502682 -230161671 - L1MEc LINE L1 -2845 3370 3274 * 315 0 0 0 chr1 12502683 12502718 -230161635 + (TA)n Simple_repeat Simple_repeat 1 35 0 325 24 0 24 chr1 12502719 12502761 -230161592 + MLT2A2 LTR ERVL 413 453 0 27294 62 11 7 chr1 12502761 12506151 -230158202 + HERVL-A2 LTR ERVL 1 3404 -2250 28 48 0 0 chr1 12506151 12506193 -230158160 + AT_rich Low_complexity Low_complexity 1 42 0 1879 122 54 0 chr1 12506222 12506501 -230157852 - AluSq SINE Alu -19 294 1 1561 196 0 22 chr1 12506549 12506861 -230157492 + AluSx SINE Alu 1 305 -7 750 190 0 8 chr1 12507010 12507131 -230157222 + AluSx SINE Alu 44 163 -149 17723 62 9 8 chr1 12507133 12509328 -230155025 + HERVL-A1 LTR ERVL 3388 5585 -69 3051 59 83 5 chr1 12509353 12509760 -230154593 + MLT2A1 LTR ERVL 1 439 -5 2016 191 81 8 chr1 12509769 12510102 -230154251 - L1MEc LINE L1 -3913 2483 2097 2133 117 6 19 chr1 12510102 12510418 -230153935 - AluSx SINE Alu 0 312 1 2016 191 81 8 chr1 12510418 12510601 -230153752 - L1MEc LINE L1 -4299 2097 1929 576 234 38 19 chr1 12510618 12510776 -230153577 - L1MEc LINE L1 -4553 1843 1683 410 309 57 0 chr1 12510777 12510952 -230153401 - L1MEc LINE L1 -4825 1390 1206 391 257 241 0 chr1 12510966 12511153 -230153200 - L1MEc LINE L1 -5307 1089 858 3162 238 74 9 chr1 12511157 12512035 -230152318 - L1MEc LINE L1 -5426 970 36 204 250 60 50 chr1 12512053 12512153 -230152200 - L3b LINE CR1 -209 1374 1274 1523 175 11 11 chr1 12513791 12514065 -230150288 + AluJo SINE Alu 1 274 -38 216 0 0 0 chr1 12514070 12514094 -230150259 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1025 274 92 48 chr1 12514198 12514786 -230149567 + L2 LINE L2 2243 2856 -458 522 217 50 56 chr1 12514831 12515011 -230149342 + L2 LINE L2 3130 3308 -5 300 200 100 0 chr1 12515384 12515444 -230148909 - MIR SINE MIR -74 188 123 2190 116 10 0 chr1 12516310 12516612 -230147741 + AluSq SINE Alu 1 305 -8 1027 76 29 12 chr1 12516616 12516788 -230147565 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 198 103 0 0 chr1 12516788 12516817 -230147536 + (GAAAA)n Simple_repeat Simple_repeat 5 33 0 2990 102 27 0 chr1 12516830 12517240 -230147113 - MER57B LTR ERV1 -13 421 1 2525 54 0 3 chr1 12518647 12518944 -230145409 + AluY SINE Alu 1 296 -15 229 305 9 0 chr1 12519650 12519723 -230144630 - MIR SINE MIR -57 151 76 186 43 0 0 chr1 12520871 12520894 -230143459 + (T)n Simple_repeat Simple_repeat 1 23 0 688 286 48 52 chr1 12521145 12521213 -230143140 - MIR SINE MIR -10 252 185 2544 80 0 0 chr1 12521213 12521526 -230142827 + AluSq SINE Alu 1 313 0 688 286 48 52 chr1 12521526 12521709 -230142644 - MIR SINE MIR -77 185 2 811 210 96 18 chr1 12521910 12522129 -230142224 + MIR SINE MIR 23 258 -4 231 311 235 0 chr1 12522155 12522287 -230142066 - MIR SINE MIR -51 211 49 1787 232 61 37 chr1 12523043 12523535 -230140818 + L1MC4 LINE L1 6505 7008 -1034 2272 105 0 0 chr1 12523537 12523832 -230140521 + AluSx SINE Alu 1 295 -17 606 234 12 42 chr1 12523943 12524110 -230140243 + L1MC4a LINE L1 7168 7329 -479 263 161 0 18 chr1 12524118 12524174 -230140179 + L1MC4 LINE L1 7988 8042 0 4279 156 37 71 chr1 12524499 12524902 -230139451 + L1MB5 LINE L1 5098 5513 -661 1400 188 24 40 chr1 12524902 12525200 -230139153 + AluJb SINE Alu 1 293 -19 4279 156 37 71 chr1 12525200 12525572 -230138781 + L1MB5 LINE L1 5513 5827 -347 2331 92 0 7 chr1 12525572 12525877 -230138476 + AluSq SINE Alu 1 303 -10 4279 156 37 71 chr1 12525877 12526206 -230138147 + L1MB5 LINE L1 5827 6165 -9 306 106 0 0 chr1 12528010 12528057 -230136296 + (CA)n Simple_repeat Simple_repeat 2 48 0 2046 129 4 0 chr1 12579133 12579411 -230084942 + AluJb SINE Alu 1 279 -33 1059 130 0 0 chr1 12579411 12579580 -230084773 + (GGGA)n Simple_repeat Simple_repeat 1 169 0 2205 107 3 16 chr1 12580557 12580867 -230083486 - AluSg SINE Alu 0 310 5 2123 85 0 0 chr1 12580885 12581145 -230083208 + AluSc SINE Alu 46 305 -4 290 302 147 0 chr1 12581187 12581303 -230083050 + L2 LINE L2 3180 3312 -1 2175 88 24 20 chr1 12581404 12581700 -230082653 + AluSx SINE Alu 1 297 -15 332 313 53 60 chr1 12582324 12582557 -230081796 + L2 LINE L2 2543 2773 -541 2173 94 20 0 chr1 12582557 12582854 -230081499 + AluSq SINE Alu 1 303 -10 332 313 53 60 chr1 12582854 12583019 -230081334 + L2 LINE L2 2773 2938 -376 1910 138 138 0 chr1 12583354 12583650 -230080703 + MER1B DNA MER1_type 1 337 0 534 302 50 30 chr1 12584000 12584118 -230080235 + MIR SINE MIR 29 154 -108 2189 46 0 4 chr1 12584118 12584377 -230079976 + AluY SINE Alu 54 311 0 534 302 50 30 chr1 12584377 12584460 -230079893 + MIR SINE MIR 154 234 -28 1695 166 0 48 chr1 12584759 12585072 -230079281 + AluJb SINE Alu 1 298 -14 1987 174 9 14 chr1 12588100 12588450 -230075903 + MER7A DNA MER2_type 1 346 0 2462 230 101 36 chr1 12588450 12589166 -230075187 + MER21B LTR ERV1 20 781 -82 204 292 31 15 chr1 12589206 12589271 -230075082 + MIR SINE MIR 197 262 0 203 205 48 108 chr1 12589530 12589613 -230074740 + MIR3 SINE MIR 120 197 -11 1102 99 0 94 chr1 12589738 12589841 -230074512 + L1PA16 LINE L1 5805 5883 -283 2163 133 0 0 chr1 12589841 12590141 -230074212 + AluSx SINE Alu 1 300 -12 1102 99 0 94 chr1 12590141 12590229 -230074124 + L1PA16 LINE L1 5883 5978 -188 362 134 45 15 chr1 12590229 12590296 -230074057 - MER21B LTR ERV1 -309 554 486 499 110 27 7 chr1 12590302 12590446 -230073907 + L1PA16 LINE L1 5985 6166 0 1474 207 71 15 chr1 12591241 12591651 -230072702 + L1M4 LINE L1 2762 3194 -2952 234 192 48 151 chr1 12591649 12591692 -230072661 + L1M4 LINE L1 2645 2691 -3455 * 2073 122 14 7 chr1 12591692 12591987 -230072366 - AluSx SINE Alu -15 297 1 234 192 48 151 chr1 12591987 12592089 -230072264 + L1M4 LINE L1 2691 2775 -3371 567 170 30 52 chr1 12592101 12592236 -230072117 + MIR SINE MIR 69 200 -62 404 284 9 9 chr1 12592517 12592633 -230071720 + L2 LINE L2 3160 3275 -38 215 211 0 19 chr1 12592664 12592716 -230071637 + MIR SINE MIR 166 216 -46 437 289 12 50 chr1 12593553 12593795 -230070558 + L1ME LINE L1 5547 5779 -342 894 275 130 17 chr1 12593958 12594435 -230069918 + L1ME3A LINE L1 5417 5947 -223 29 28 0 0 chr1 12595014 12595050 -230069303 + AT_rich Low_complexity Low_complexity 1 36 0 1972 131 10 10 chr1 12595103 12595408 -230068945 - AluJb SINE Alu -7 305 1 2638 185 74 25 chr1 12595471 12595528 -230068825 + MER119 DNA MER1_type 5 58 -525 2351 66 3 3 chr1 12595528 12595817 -230068536 - AluSc SINE Alu -20 289 1 2638 185 74 25 chr1 12595817 12596311 -230068042 + MER119 DNA MER1_type 58 583 0 322 266 93 58 chr1 12597556 12597610 -230066743 + MER5B DNA MER1_type 1 52 -126 2091 139 7 3 chr1 12597610 12597913 -230066440 + AluSx SINE Alu 1 304 -8 322 266 93 58 chr1 12597913 12597997 -230066356 + MER5B DNA MER1_type 52 144 -34 2389 90 0 10 chr1 12598062 12598372 -230065981 - AluSq SINE Alu -6 307 1 355 288 44 44 chr1 12598512 12598672 -230065681 - MIR3 SINE MIR -9 199 40 1404 179 37 15 chr1 12598724 12598997 -230065356 - AluJo SINE Alu -28 284 6 2435 68 0 3 chr1 12599611 12599907 -230064446 - AluY SINE Alu -15 296 2 1845 131 67 3 chr1 12600395 12600677 -230063676 - AluJb SINE Alu -12 300 1 824 158 0 0 chr1 12600966 12601086 -230063267 + FLAM_C SINE Alu 1 120 -23 30 27 0 0 chr1 12601087 12601124 -230063229 + AT_rich Low_complexity Low_complexity 1 37 0 1974 163 0 0 chr1 12601207 12601508 -230062845 + AluSx SINE Alu 1 301 -11 545 214 0 46 chr1 12601590 12601721 -230062632 - MER94 DNA DNA -9 125 1 261 222 12 86 chr1 12601808 12601889 -230062464 + MER5A DNA MER1_type 113 187 -2 246 200 0 0 chr1 12602909 12602959 -230061394 + L2 LINE L2 3262 3311 -2 2019 159 0 0 chr1 12603188 12603497 -230060856 + AluSx SINE Alu 1 309 -3 434 235 104 52 chr1 12603710 12603961 -230060392 + L1MC5 LINE L1 7314 7577 -384 2026 132 0 0 chr1 12603971 12604251 -230060102 + AluSx SINE Alu 1 280 -32 1029 86 25 0 chr1 12604257 12604419 -230059934 + (GGAAA)n Simple_repeat Simple_repeat 4 169 0 404 247 132 37 chr1 12604593 12604765 -230059588 + L1MC5 LINE L1 7603 7757 -204 2170 98 4 0 chr1 12604765 12605088 -230059265 + AluSx SINE Alu 7 330 0 404 247 132 37 chr1 12605088 12605210 -230059143 + L1MC5 LINE L1 7757 7926 -35 567 283 118 34 chr1 12605944 12606181 -230058172 - MIR SINE MIR 0 262 6 190 216 0 0 chr1 12606322 12606359 -230057994 - MIR SINE MIR -73 135 99 1966 141 3 3 chr1 12608161 12608459 -230055894 + AluJb SINE Alu 1 298 -14 347 179 28 47 chr1 12608476 12608582 -230055771 + L1MC5 LINE L1 7094 7197 -764 990 237 86 87 chr1 12608636 12609372 -230054981 + L1MC5 LINE L1 7246 7900 -61 44 63 0 0 chr1 12609396 12609475 -230054878 + AT_rich Low_complexity Low_complexity 1 79 0 1915 128 45 3 chr1 12609560 12609848 -230054505 + AluSx SINE Alu 1 300 -12 2358 97 0 13 chr1 12611776 12612087 -230052266 + AluSq SINE Alu 3 309 -4 237 305 8 85 chr1 12614887 12614923 -230049430 + L2 LINE L2 3122 3159 -113 1948 118 0 73 chr1 12614923 12615101 -230049252 - AluSx SINE Alu -19 293 146 2296 119 0 0 chr1 12615101 12615412 -230048941 - AluSx SINE Alu -1 311 1 1948 118 0 73 chr1 12615412 12615548 -230048805 - AluSx SINE Alu -166 146 2 237 305 8 85 chr1 12615548 12615629 -230048724 + L2 LINE L2 3159 3230 -42 1271 204 115 4 chr1 12615737 12616007 -230048346 + AluJo SINE Alu 1 300 -2 2234 107 3 0 chr1 12616009 12616307 -230048046 + AluSx SINE Alu 1 299 -13 522 163 51 10 chr1 12616307 12616405 -230047948 + L1MB7 LINE L1 5576 5677 -507 2115 202 59 14 chr1 12616445 12616954 -230047399 + L1MB7 LINE L1 5652 6183 -1 342 0 0 0 chr1 12617918 12617956 -230046397 + (CA)n Simple_repeat Simple_repeat 2 39 0 1873 146 25 0 chr1 12618158 12618439 -230045914 - AluJo SINE Alu -24 288 1 2342 100 7 0 chr1 12618660 12618961 -230045392 - AluSx SINE Alu -8 304 2 1013 163 6 11 chr1 12619453 12619631 -230044722 + AluJb SINE Alu 121 297 -15 2225 125 20 0 chr1 12619869 12620174 -230044179 - AluSx SINE Alu -1 311 1 1957 146 3 27 chr1 12620182 12620483 -230043870 - AluJo SINE Alu -18 294 1 189 0 0 0 chr1 12622078 12622099 -230042254 + (A)n Simple_repeat Simple_repeat 1 21 0 1675 163 43 0 chr1 12622102 12622378 -230041975 + AluSx SINE Alu 4 291 -21 32 0 0 0 chr1 12622378 12622410 -230041943 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr1 12622922 12622953 -230041400 + AT_rich Low_complexity Low_complexity 1 31 0 15890 112 25 27 chr1 12623620 12624156 -230040197 - Tigger1 DNA MER2_type 0 2418 1882 1994 152 0 19 chr1 12624156 12624472 -230039881 - AluJo SINE Alu -2 310 1 15890 112 25 27 chr1 12624472 12624911 -230039442 - Tigger1 DNA MER2_type -536 1882 1444 685 187 8 0 chr1 12624911 12625034 -230039319 + FLAM_C SINE Alu 1 124 -9 15890 112 25 27 chr1 12625034 12626480 -230037873 - Tigger1 DNA MER2_type -974 1444 1 3177 207 26 20 chr1 12626840 12627283 -230037070 - MER82 DNA MER2_type -1 652 202 2458 159 14 31 chr1 12627283 12627345 -230037008 - MER47B DNA MER2_type -1908 415 353 2166 138 0 0 chr1 12627345 12627650 -230036703 + AluSx SINE Alu 1 305 -7 2458 159 14 31 chr1 12627650 12628009 -230036344 - MER47B DNA MER2_type -1970 353 1 3177 207 26 20 chr1 12628009 12628213 -230036140 - MER82 DNA MER2_type -451 202 1 702 198 33 66 chr1 12628719 12628901 -230035452 + MER3 DNA MER1_type 34 209 0 2659 58 0 0 chr1 12630024 12630333 -230034020 + AluY SINE Alu 1 309 -2 1864 148 41 0 chr1 12630745 12631035 -230033318 + AluJo SINE Alu 1 302 -10 1273 201 23 4 chr1 12631053 12631317 -230033036 + AluJb SINE Alu 42 310 -2 180 0 0 0 chr1 12633638 12633658 -230030695 + (A)n Simple_repeat Simple_repeat 1 20 0 721 163 47 23 chr1 12634167 12634296 -230030057 - FLAM_C SINE Alu -1 132 1 25 0 0 0 chr1 12634405 12634430 -230029923 + AT_rich Low_complexity Low_complexity 1 25 0 2225 117 7 0 chr1 12634430 12634737 -230029616 - AluSc SINE Alu 0 309 1 470 281 142 11 chr1 12634812 12635086 -230029267 - L1MC4a LINE L1 -1736 6072 5763 2434 90 0 0 chr1 12635104 12635405 -230028948 + AluSx SINE Alu 2 302 -10 2254 118 0 13 chr1 12635521 12635835 -230028518 + AluSx SINE Alu 1 310 -2 890 137 0 0 chr1 12636008 12636132 -230028221 + FLAM_C SINE Alu 1 124 -19 329 305 45 57 chr1 12636681 12636858 -230027495 - L2 LINE L2 -2 3270 3096 1129 147 25 15 chr1 12636971 12637169 -230027184 + MER2 DNA MER2_type 1 200 -145 2429 90 3 0 chr1 12637173 12637472 -230026881 - AluSp SINE Alu -13 300 1 229 200 0 0 chr1 12637477 12637532 -230026821 + T-rich Low_complexity Low_complexity 1 55 0 2313 125 0 0 chr1 12637548 12637859 -230026494 - AluSx SINE Alu -1 311 1 316 221 0 15 chr1 12637866 12637934 -230026419 + MER2 DNA MER2_type 279 345 0 1318 240 104 12 chr1 12638098 12638510 -230025843 + MLT1C LTR MaLR 6 455 -12 398 232 21 0 chr1 12639126 12639221 -230025132 - MER58B DNA MER1_type 0 341 245 298 229 0 0 chr1 12639245 12639306 -230025047 - MER58B DNA MER1_type -36 305 245 298 229 0 0 chr1 12639330 12639391 -230024962 - MER58B DNA MER1_type -36 305 245 562 228 184 0 chr1 12639415 12639573 -230024780 - MER58A DNA MER1_type -36 188 2 329 151 12 58 chr1 12639686 12639772 -230024581 + MIR SINE MIR 179 260 -2 793 168 74 141 chr1 12639876 12640132 -230024221 + MER21B LTR ERV1 11 249 -614 1758 214 77 3 chr1 12640200 12640579 -230023774 + MER21B LTR ERV1 431 837 -26 194 322 60 40 chr1 12640615 12640764 -230023589 - L2 LINE L2 -1032 2282 2131 * 210 250 0 0 chr1 12640761 12640805 -230023548 + MIR SINE MIR 108 151 -111 363 78 0 0 chr1 12641351 12641402 -230022951 + (TTATG)n Simple_repeat Simple_repeat 2 52 0 563 180 72 22 chr1 12641690 12641704 -230022649 + L1MB7 LINE L1 5189 5201 -945 1644 189 10 20 chr1 12641704 12642036 -230022317 + AluJo SINE Alu 1 312 0 563 180 72 22 chr1 12642036 12642160 -230022193 + L1MB7 LINE L1 5201 5334 -812 2226 81 10 19 chr1 12642160 12642470 -230021883 + AluSq SINE Alu 1 307 -6 1343 97 0 0 chr1 12642470 12642645 -230021708 + AluSg/x SINE Alu 124 298 -12 723 201 15 21 chr1 12642649 12642815 -230021538 + L1MB7 LINE L1 5325 5503 -671 231 211 0 0 chr1 12642815 12642872 -230021481 + T-rich Low_complexity Low_complexity 1 57 0 1960 99 37 15 chr1 12642919 12643191 -230021162 - AluSx SINE Alu -17 295 18 1578 180 24 0 chr1 12643205 12643500 -230020853 + L1MB7 LINE L1 5487 5788 -396 2841 187 64 33 chr1 12643500 12643785 -230020568 + MER67B LTR ERV1 1 276 -385 1413 130 39 17 chr1 12643785 12644016 -230020337 - MER46A DNA MER2_type 0 236 1 2841 187 64 33 chr1 12644016 12644371 -230019982 + MER67B LTR ERV1 276 661 0 1230 158 59 9 chr1 12644371 12644592 -230019761 + L1MB7 LINE L1 5785 6016 -168 888 167 0 61 chr1 12644592 12644772 -230019581 - FRAM SINE Alu -8 168 1 720 187 0 0 chr1 12644789 12644923 -230019430 + L1MB7 LINE L1 6038 6171 -13 382 216 23 16 chr1 12645303 12645415 -230018938 - MIR3 SINE MIR -40 168 56 675 124 0 0 chr1 12646740 12646837 -230017516 - AluJ/FLAM SINE Alu -213 99 3 837 165 0 71 chr1 12646894 12647064 -230017289 + AluJo SINE Alu 123 280 -32 192 40 0 0 chr1 12647064 12647089 -230017264 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2324 103 0 6 chr1 12647094 12647406 -230016947 + AluSx SINE Alu 1 310 -2 445 273 51 17 chr1 12647449 12647625 -230016728 - MER5A DNA MER1_type 0 189 8 567 169 305 0 chr1 12648199 12648353 -230016000 - MER58C DNA MER1_type -13 202 2 350 216 56 40 chr1 12648376 12648501 -230015852 + MER5A DNA MER1_type 26 152 -37 204 300 88 0 chr1 12648785 12648865 -230015488 - L2 LINE L2 -17 3255 3169 1991 142 0 19 chr1 12649106 12649424 -230014929 + AluJo SINE Alu 1 312 0 2481 95 0 0 chr1 12649730 12650036 -230014317 - AluSq SINE Alu -7 306 1 1905 154 10 10 chr1 12650910 12651215 -230013138 + AluJb SINE Alu 1 305 -7 1851 153 10 13 chr1 12651419 12651719 -230012634 + AluJo SINE Alu 4 302 -10 319 250 48 32 chr1 12651745 12651869 -230012484 - MIR SINE MIR -42 220 95 25 31 0 0 chr1 12651869 12651901 -230012452 + AT_rich Low_complexity Low_complexity 1 32 0 1010 159 0 0 chr1 12651904 12652055 -230012298 - FRAM SINE Alu -23 153 3 23 0 0 0 chr1 12652132 12652155 -230012198 + AT_rich Low_complexity Low_complexity 1 23 0 1904 135 17 3 chr1 12652179 12652475 -230011878 - AluJb SINE Alu -12 300 1 1890 148 0 26 chr1 12652509 12652812 -230011541 - AluJb SINE Alu -17 295 1 1321 171 0 25 chr1 12652848 12653088 -230011265 - AluJb SINE Alu -25 287 54 327 352 0 0 chr1 12653185 12653276 -230011077 + L1MC4 LINE L1 6613 6703 -1339 304 232 29 14 chr1 12653215 12653284 -230011069 - L1MCa LINE L1 -4362 2064 1995 * 705 279 68 8 chr1 12653357 12653594 -230010759 - MIR SINE MIR -1 261 11 1918 143 0 7 chr1 12653666 12653966 -230010387 + AluJb SINE Alu 1 298 -14 2290 76 13 0 chr1 12654750 12655052 -230009301 - AluSq SINE Alu -7 306 1 450 240 151 11 chr1 12655481 12655660 -230008693 - MIR SINE MIR -10 252 49 2155 103 10 3 chr1 12656272 12656583 -230007770 - AluSq SINE Alu 0 313 1 781 183 79 0 chr1 12656821 12656985 -230007368 + MER20 DNA MER1_type 42 218 -1 2259 96 0 0 chr1 12657043 12657346 -230007007 + AluSx SINE Alu 1 303 -9 225 0 0 0 chr1 12657686 12657711 -230006642 + (A)n Simple_repeat Simple_repeat 1 25 0 1965 114 3 23 chr1 12658343 12658642 -230005711 - AluSx SINE Alu -19 293 1 225 244 25 25 chr1 12660154 12660273 -230004080 + (CCCGG)n Simple_repeat Simple_repeat 5 123 0 282 286 251 12 chr1 12660614 12660873 -230003480 + L2 LINE L2 2656 2976 -338 912 214 54 11 chr1 12660876 12661156 -230003197 - MER33 DNA MER1_type -9 315 24 388 284 223 14 chr1 12661173 12661257 -230003096 + L2 LINE L2 2973 3038 -275 2054 102 31 0 chr1 12661257 12661551 -230002802 + AluSx SINE Alu 1 303 -9 388 284 223 14 chr1 12661551 12661744 -230002609 + L2 LINE L2 3038 3308 -5 180 162 0 27 chr1 12662096 12662133 -230002220 + MER5A DNA MER1_type 37 72 -117 2073 113 0 10 chr1 12662139 12662439 -230001914 + AluSx SINE Alu 1 297 -15 1433 144 53 42 chr1 12662449 12662733 -230001620 + AluJo SINE Alu 1 287 -25 1472 193 60 17 chr1 12662789 12663142 -230001211 + L1ME1 LINE L1 5581 5948 -218 252 0 0 0 chr1 12663195 12663223 -230001130 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1848 127 0 0 chr1 12663227 12663494 -230000859 - AluSx SINE Alu -37 275 9 1156 155 43 31 chr1 12663513 12663643 -230000710 - L1MA7 LINE L1 -7 6284 6157 2478 30 0 7 chr1 12663643 12663941 -230000412 - AluY SINE Alu -15 296 1 1156 155 43 31 chr1 12663941 12664068 -230000285 - L1MA7 LINE L1 -134 6157 6024 2123 113 3 25 chr1 12664068 12664386 -229999967 - AluSx SINE Alu -1 311 1 808 247 10 81 chr1 12664393 12664689 -229999664 + MER21B LTR ERV1 16 290 -573 2221 88 7 3 chr1 12664702 12664999 -229999354 + AluY SINE Alu 1 298 -13 1572 209 77 5 chr1 12665020 12665106 -229999247 + MER21B LTR ERV1 392 470 -393 2073 123 7 0 chr1 12665106 12665408 -229998945 + AluSg SINE Alu 1 304 -6 1572 209 77 5 chr1 12665408 12665713 -229998640 + MER21B LTR ERV1 470 811 -52 894 78 0 47 chr1 12665744 12665843 -229998510 + FLAM_C SINE Alu 12 114 -198 2672 105 3 22 chr1 12665843 12666140 -229998213 + THE1B LTR MaLR 1 291 -73 2124 117 10 0 chr1 12666140 12666440 -229997913 - AluSc SINE Alu -6 303 1 2672 105 3 22 chr1 12666440 12666513 -229997840 + THE1B LTR MaLR 291 364 0 10528 114 48 2 chr1 12666513 12666940 -229997413 + THE1B-int LTR MaLR 1 407 -1173 2356 76 0 16 chr1 12666940 12667255 -229997098 + AluY SINE Alu 1 310 -1 10528 114 48 2 chr1 12667255 12668337 -229996016 + THE1B-int LTR MaLR 407 1580 0 2534 134 3 6 chr1 12668337 12668702 -229995651 + THE1B LTR MaLR 1 364 0 894 78 0 47 chr1 12668702 12668728 -229995625 + FLAM_C SINE Alu 111 133 -179 447 273 30 6 chr1 12668942 12669107 -229995246 + Charlie8 DNA MER1_type 1 169 -2248 216 0 0 0 chr1 12669625 12669649 -229994704 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 253 232 0 0 chr1 12669671 12669727 -229994626 - L2 LINE L2 0 3313 3258 1489 163 4 40 chr1 12669750 12669886 -229994467 - AluJo SINE Alu -37 275 153 2114 100 24 0 chr1 12669886 12670175 -229994178 - AluSx SINE Alu -16 296 1 1489 163 4 40 chr1 12670175 12670314 -229994039 - AluJo SINE Alu -159 153 10 381 227 108 59 chr1 12670329 12670532 -229993821 - L2 LINE L2 -40 3273 3061 1204 211 41 22 chr1 12670576 12670894 -229993459 - MER33 DNA MER1_type 0 324 1 2276 110 0 0 chr1 12670974 12671284 -229993069 + AluY SINE Alu 1 310 -1 323 276 57 32 chr1 12671312 12671435 -229992918 - MIR3 SINE MIR -52 156 31 196 304 0 43 chr1 12671647 12671716 -229992637 + MIR SINE MIR 126 191 -71 490 94 0 0 chr1 12671751 12671815 -229992538 - AluJ/FRAM SINE Alu -23 289 226 829 127 0 16 chr1 12671828 12671954 -229992399 - FLAM_C SINE Alu -17 126 3 1956 133 31 0 chr1 12672047 12672341 -229992012 + AluSx SINE Alu 1 303 -9 577 267 111 19 chr1 12672396 12672658 -229991695 + L2 LINE L2 2973 3258 -55 691 235 48 48 chr1 12672671 12672901 -229991452 - MIR SINE MIR 0 262 33 737 117 5 203 chr1 12672911 12672937 -229991416 - AluJb SINE Alu -19 293 264 2451 57 0 3 chr1 12672937 12673238 -229991115 + AluY SINE Alu 1 300 -11 737 117 5 203 chr1 12673238 12673408 -229990945 - AluJb SINE Alu -48 264 136 216 253 23 58 chr1 12673855 12673942 -229990411 - MIR SINE MIR -66 196 113 244 224 45 45 chr1 12674179 12674246 -229990107 - LTR33 LTR ERVL -302 219 153 1081 245 131 22 chr1 12674456 12674901 -229989452 - LTR1B LTR ERV1 -19 496 7 383 280 91 7 chr1 12674879 12675022 -229989331 - LTR33 LTR ERVL -366 155 1 * 1245 255 95 21 chr1 12675560 12676078 -229988275 - L2 LINE L2 -1077 2237 1682 1969 82 4 0 chr1 12676088 12676343 -229988010 - AluSq SINE Alu -18 295 40 3617 167 24 36 chr1 12676392 12676490 -229987863 - L1MB3 LINE L1 -31 6152 6054 1811 138 48 3 chr1 12676490 12676781 -229987572 - AluJo SINE Alu -8 304 1 3617 167 24 36 chr1 12676781 12677065 -229987288 - L1MB3 LINE L1 -129 6054 5768 2354 89 0 0 chr1 12677065 12677368 -229986985 - AluSx SINE Alu -9 303 1 3617 167 24 36 chr1 12677368 12677708 -229986645 - L1MB3 LINE L1 -415 5768 5438 1105 245 114 8 chr1 12677709 12678068 -229986285 - L2 LINE L2 -1621 1693 1297 860 212 0 0 chr1 12678072 12678223 -229986130 + FRAM SINE Alu 5 155 -11 2129 96 13 13 chr1 12678257 12678582 -229985771 + AluSx SINE Alu 1 312 0 1231 228 126 17 chr1 12678679 12679035 -229985318 + MLT1D LTR MaLR 111 505 0 316 328 105 61 chr1 12679043 12679101 -229985252 - L2 LINE L2 -2033 1281 1227 1562 175 0 7 chr1 12679101 12679370 -229984983 - AluSx SINE Alu -45 267 1 316 328 105 61 chr1 12679370 12679607 -229984746 - L2 LINE L2 -2087 1227 973 291 197 91 0 chr1 12679607 12679673 -229984680 - L2 LINE L2 -2453 861 790 504 262 0 60 chr1 12679701 12679807 -229984546 + MER58B DNA MER1_type 202 298 -2122 1201 196 98 18 chr1 12679807 12680083 -229984270 + AluJb SINE Alu 1 298 -14 504 262 0 60 chr1 12680083 12680125 -229984228 + MER58B DNA MER1_type 298 341 0 327 257 193 12 chr1 12680134 12680305 -229984048 - L2 LINE L2 -2527 787 586 1299 164 0 5 chr1 12680361 12680580 -229983773 - AluSg/x SINE Alu -8 304 87 310 316 127 26 chr1 12680582 12680810 -229983543 + L2 LINE L2 2931 3181 -91 902 148 77 0 chr1 12681388 12681543 -229982810 - FRAM SINE Alu -15 161 1 2250 94 0 0 chr1 12682424 12682721 -229981632 - AluSx SINE Alu -15 297 1 279 0 0 0 chr1 12682958 12682989 -229981364 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 444 187 132 9 chr1 12683697 12683831 -229980522 + MIR SINE MIR 15 145 -63 532 141 0 0 chr1 12683882 12683960 -229980393 + FLAM_A SINE Alu 34 111 -31 1302 198 99 0 chr1 12683960 12684243 -229980110 - AluJb SINE Alu -1 311 1 558 263 142 68 chr1 12684246 12684421 -229979932 + L2 LINE L2 2351 2512 -760 2107 107 3 19 chr1 12684421 12684731 -229979622 + AluSq SINE Alu 1 305 -8 558 263 142 68 chr1 12684731 12685320 -229979033 + L2 LINE L2 2512 3176 -96 946 103 0 22 chr1 12685320 12685456 -229978897 - FLAM_C SINE Alu 0 133 1 558 263 142 68 chr1 12685456 12685508 -229978845 + L2 LINE L2 3176 3223 -49 240 35 0 0 chr1 12685532 12685561 -229978792 + (TGG)n Simple_repeat Simple_repeat 1 29 0 375 196 0 54 chr1 12685569 12685661 -229978692 + Charlie8 DNA MER1_type 75 161 -2256 1885 128 3 40 chr1 12686319 12686623 -229977730 + AluSx SINE Alu 1 293 -19 197 250 50 0 chr1 12686682 12686742 -229977611 - L2 LINE L2 0 3313 3251 188 415 51 0 chr1 12687062 12687180 -229977173 - MIR SINE MIR -81 181 58 819 285 31 0 chr1 12687476 12687704 -229976649 + MIR SINE MIR 28 262 0 1080 236 20 20 chr1 12688750 12689000 -229975353 + MIR SINE MIR 8 257 -5 996 216 27 61 chr1 12689035 12689058 -229975295 + MER58B DNA MER1_type 55 77 -2343 1794 161 0 25 chr1 12689058 12689374 -229974979 - AluJo SINE Alu 0 312 5 996 216 27 61 chr1 12689374 12689428 -229974925 + MER58B DNA MER1_type 77 131 -2289 2115 98 7 0 chr1 12689428 12689724 -229974629 + AluSp SINE Alu 1 298 -15 996 216 27 61 chr1 12689724 12689942 -229974411 + MER58B DNA MER1_type 131 341 0 372 207 145 35 chr1 12690085 12690269 -229974084 - MIR SINE MIR -2 260 50 197 202 67 67 chr1 12690858 12690947 -229973406 - MIR SINE MIR -77 131 43 2339 75 0 10 chr1 12691356 12691662 -229972691 + AluY SINE Alu 1 303 -8 225 0 0 0 chr1 12691664 12691689 -229972664 + (CAGC)n Simple_repeat Simple_repeat 4 28 0 411 276 109 48 chr1 12691889 12692127 -229972226 + MIR SINE MIR 7 252 -10 2393 54 10 0 chr1 12692207 12692505 -229971848 - AluY SINE Alu -10 301 1 430 286 37 48 chr1 12692653 12692838 -229971515 + MIR SINE MIR 7 189 -56 561 226 23 45 chr1 12692891 12693024 -229971329 - MER63A DNA MER1_type -45 165 36 1997 138 23 0 chr1 12693101 12693406 -229970947 + AluSx SINE Alu 1 312 0 244 279 47 23 chr1 12693700 12693786 -229970567 + MIR SINE MIR 80 150 -58 802 175 81 6 chr1 12693847 12694007 -229970346 + MER20 DNA MER1_type 1 172 -47 2080 125 0 0 chr1 12694012 12694330 -229970023 - AluSx SINE Alu 0 318 1 599 172 0 0 chr1 12694349 12694448 -229969905 - FLAM_C SINE Alu -4 139 41 277 214 18 0 chr1 12694670 12694726 -229969627 + LTR67 LTR ERVL 97 153 -404 * 504 264 78 86 chr1 12694687 12695073 -229969280 + MLT1J LTR MaLR 110 492 -19 233 321 74 74 chr1 12695995 12696291 -229968062 + L2 LINE L2 2977 3272 0 1556 163 21 18 chr1 12696751 12697058 -229967295 - AluJo SINE Alu 0 308 1 217 250 0 0 chr1 12697179 12697235 -229967118 + GA-rich Low_complexity Low_complexity 1 56 0 372 138 0 0 chr1 12698041 12698106 -229966247 + (CA)n Simple_repeat Simple_repeat 2 66 0 225 211 0 135 chr1 12698826 12698982 -229965371 + (CCCCG)n Simple_repeat Simple_repeat 2 136 0 1885 108 4 4 chr1 12699874 12700142 -229964211 - AluSx SINE Alu -4 308 41 1326 286 102 1 chr1 12700269 12700789 -229963564 + L2 LINE L2 2732 3309 -4 347 242 133 8 chr1 12700889 12701009 -229963344 - L2 LINE L2 0 3272 3138 205 167 156 33 chr1 12701094 12701184 -229963169 + L2 LINE L2 2999 3099 -173 * 559 216 12 37 chr1 12701182 12701344 -229963009 - L2 LINE L2 -205 3067 2910 905 150 0 0 chr1 12701483 12701616 -229962737 + AluSx SINE Alu 42 174 -138 1753 236 72 9 chr1 12701630 12702062 -229962291 - L1ME1 LINE L1 -90 6076 5618 704 267 90 24 chr1 12703273 12703700 -229960653 - HAL1 LINE L1 -428 2079 1596 382 147 29 0 chr1 12703929 12703997 -229960356 + L1ME LINE L1 5615 5684 -482 1006 180 6 6 chr1 12703997 12704180 -229960173 + AluJo SINE Alu 126 308 -4 464 205 25 10 chr1 12704185 12704316 -229960037 + L1ME LINE L1 5652 5790 -374 2369 76 0 3 chr1 12704610 12704931 -229959422 + AluSg SINE Alu 1 320 0 377 248 81 43 chr1 12704938 12705099 -229959254 - LTR41 LTR ERVL -606 167 1 254 286 30 75 chr1 12705100 12705233 -229959120 - HAL1 LINE L1 -1436 1071 945 2370 96 0 0 chr1 12705363 12705655 -229958698 + AluSx SINE Alu 1 292 -20 1754 197 8 16 chr1 12705694 12706080 -229958273 + L1PB4 LINE L1 5774 6156 0 2311 117 0 0 chr1 12706391 12706699 -229957654 + AluSx SINE Alu 1 308 -4 2274 95 7 3 chr1 12706960 12707256 -229957097 - AluSq SINE Alu -16 297 1 2217 109 3 0 chr1 12707494 12707787 -229956566 + AluSp SINE Alu 1 294 -19 230 225 14 14 chr1 12708356 12708427 -229955926 + L1ME LINE L1 5857 5927 -237 316 286 9 0 chr1 12708507 12708612 -229955741 + L1MA10 LINE L1 6229 6334 0 305 285 53 33 chr1 12708609 12708760 -229955593 + L1MC5 LINE L1 7772 7925 -36 * 2464 87 0 10 chr1 12708768 12709080 -229955273 + AluSg SINE Alu 1 309 -1 810 248 26 43 chr1 12709448 12709678 -229954675 - MIR SINE MIR -25 237 12 461 263 78 35 chr1 12709778 12710000 -229954353 + MLT1G LTR MaLR 1 197 -370 396 167 0 0 chr1 12710000 12710096 -229954257 + CT-rich Low_complexity Low_complexity 2 97 0 891 147 0 0 chr1 12710097 12710274 -229954079 + (TC)n Simple_repeat Simple_repeat 2 178 0 1076 98 0 0 chr1 12710302 12710435 -229953918 + AluSq/x SINE Alu 1 133 -180 837 242 72 16 chr1 12710451 12710774 -229953579 + MLT1G LTR MaLR 163 590 0 1687 188 10 29 chr1 12711079 12711388 -229952965 + AluJb SINE Alu 1 303 -9 423 288 125 0 chr1 12711412 12711572 -229952781 + MIR SINE MIR 13 192 -70 2352 96 3 6 chr1 12712293 12712605 -229951748 + AluSx SINE Alu 1 311 -1 443 232 159 0 chr1 12712720 12712871 -229951482 + L1ME LINE L1 5645 5819 -347 2532 62 3 10 chr1 12712874 12713179 -229951174 + AluSq SINE Alu 1 303 -10 589 289 39 19 chr1 12714342 12714550 -229949803 + MLT1K LTR MaLR 22 233 -355 346 147 13 80 chr1 12714723 12714798 -229949555 + MLT1K LTR MaLR 449 518 -70 2139 98 29 0 chr1 12714935 12715236 -229949117 - AluSx SINE Alu 0 309 1 236 359 39 0 chr1 12715238 12715341 -229949012 + MIR SINE MIR 135 241 -21 2348 103 0 3 chr1 12715398 12715700 -229948653 + AluSg SINE Alu 2 302 -8 307 323 44 6 chr1 12715806 12715964 -229948389 + MIR SINE MIR 64 227 -35 1070 179 94 55 chr1 12716103 12716349 -229948004 - MER33 DNA MER1_type -2261 324 62 2301 121 0 13 chr1 12716349 12716662 -229947691 - AluSx SINE Alu -3 309 1 1070 179 94 55 chr1 12716662 12716723 -229947630 - MER33 DNA MER1_type -2523 62 5 224 329 24 0 chr1 12716898 12716983 -229947370 - MIR3 SINE MIR -28 180 94 555 326 66 43 chr1 12717170 12717609 -229946744 - L2 LINE L2 -5 3267 2819 905 206 28 0 chr1 12717629 12717809 -229946544 + L1MDa LINE L1 16 200 -6340 2349 114 0 3 chr1 12717811 12718119 -229946234 - AluSq SINE Alu -6 307 1 225 0 0 0 chr1 12718176 12718201 -229946152 + (TG)n Simple_repeat Simple_repeat 1 25 0 282 87 0 0 chr1 12718201 12718247 -229946106 + (GA)n Simple_repeat Simple_repeat 2 47 0 1070 242 33 18 chr1 12719569 12719592 -229944761 + L1MC2 LINE L1 5279 5300 -884 2497 148 24 38 chr1 12719592 12719982 -229944371 + L1MC2 LINE L1 5840 6223 -121 1942 108 6 79 chr1 12719982 12720297 -229944056 + AluJb SINE Alu 1 292 -20 2497 148 24 38 chr1 12720297 12720407 -229943946 + L1MC2 LINE L1 6223 6333 -11 2314 77 35 3 chr1 12720407 12720693 -229943660 - AluSx SINE Alu -17 295 1 1070 242 33 18 chr1 12720693 12720949 -229943404 + L1MC2 LINE L1 5299 5508 -676 2177 113 0 0 chr1 12720949 12721254 -229943099 + AluSx SINE Alu 1 305 0 305 315 51 73 chr1 12721581 12721725 -229942628 + HAL1 LINE L1 826 972 -1535 6443 134 41 35 chr1 12721725 12721800 -229942553 + Tigger3b DNA MER2_type 4 77 -2951 2288 81 30 10 chr1 12721800 12722096 -229942257 + AluSx SINE Alu 1 302 -10 6443 134 41 35 chr1 12722096 12722327 -229942026 + Tigger3b DNA MER2_type 77 305 -2723 1989 135 7 10 chr1 12722327 12722631 -229941722 - AluJb SINE Alu -9 303 1 6443 134 41 35 chr1 12722631 12722799 -229941554 + Tigger3b DNA MER2_type 305 470 -2558 2408 106 0 0 chr1 12722799 12723100 -229941253 - AluSx SINE Alu -11 301 1 6443 134 41 35 chr1 12723100 12723574 -229940779 + Tigger3b DNA MER2_type 470 966 -2062 2309 118 0 6 chr1 12723574 12723888 -229940465 - AluSx SINE Alu 0 312 1 6443 134 41 35 chr1 12723888 12724155 -229940198 + Tigger3b DNA MER2_type 966 1230 -1 305 315 51 73 chr1 12724155 12724188 -229940165 + HAL1 LINE L1 972 999 -1508 620 209 8 22 chr1 12724193 12724327 -229940026 + FLAM_A SINE Alu 1 132 -1 2220 123 20 0 chr1 12724330 12724631 -229939722 + AluSx SINE Alu 1 307 -5 1542 250 70 74 chr1 12724631 12725442 -229938911 + HAL1b LINE L1 534 1341 -7 533 269 67 64 chr1 12725575 12726010 -229938343 + L1M4 LINE L1 2326 2761 -3385 535 268 49 18 chr1 12726150 12726314 -229938039 + MIR SINE MIR 20 188 -74 335 293 8 73 chr1 12727024 12727147 -229937206 + MIR SINE MIR 147 261 -1 1081 130 24 93 chr1 12727219 12727466 -229936887 - MER30 DNA MER1_type 0 230 1 933 261 77 41 chr1 12727528 12728024 -229936329 + MLT1K LTR MaLR 133 577 -11 1310 239 91 42 chr1 12728026 12728186 -229936167 - Charlie4a DNA MER1_type -1455 506 355 2503 74 0 0 chr1 12728186 12728484 -229935869 + AluSq SINE Alu 1 298 -15 1310 239 91 42 chr1 12728484 12728805 -229935548 - Charlie4a DNA MER1_type -1606 355 1 2534 87 0 0 chr1 12728848 12729160 -229935193 + AluSx SINE Alu 1 312 0 364 228 148 29 chr1 12729214 12729505 -229934848 + L2 LINE L2 2699 3047 -225 430 70 0 0 chr1 12729634 12729691 -229934662 + AluSx SINE Alu 4 60 -253 2179 102 41 3 chr1 12729691 12729984 -229934369 - AluY SINE Alu -7 304 1 1775 135 0 0 chr1 12729984 12730228 -229934125 + AluSx SINE Alu 53 296 -16 933 222 81 63 chr1 12730488 12730668 -229933685 + MLT1B LTR MaLR 1 176 -214 2364 95 3 0 chr1 12730668 12730963 -229933390 + AluSx SINE Alu 1 296 -16 2569 70 0 3 chr1 12730965 12731277 -229933076 + AluY SINE Alu 1 311 0 933 222 81 63 chr1 12731277 12731303 -229933050 + MLT1B LTR MaLR 176 200 -190 1696 171 25 4 chr1 12731303 12731584 -229932769 + AluJo SINE Alu 4 290 -22 933 222 81 63 chr1 12731584 12731699 -229932654 + MLT1B LTR MaLR 200 337 -53 2130 131 12 6 chr1 12731699 12732034 -229932319 + MER1B DNA MER1_type 1 337 0 933 222 81 63 chr1 12732034 12732090 -229932263 + MLT1B LTR MaLR 337 390 0 1154 216 131 21 chr1 12732261 12732558 -229931795 + LTR16C LTR ERVL 127 465 -26 1932 171 26 28 chr1 12732558 12732949 -229931404 - MLT1B LTR MaLR 0 390 1 1154 216 131 21 chr1 12732949 12732980 -229931373 + LTR16C LTR ERVL 465 491 0 784 202 8 19 chr1 12733126 12733784 -229930569 + (TGGA)n Simple_repeat Simple_repeat 1 650 0 679 187 12 18 chr1 12733804 12733975 -229930378 + (TGGA)n Simple_repeat Simple_repeat 1 170 0 321 219 10 52 chr1 12734438 12734534 -229929819 - L2 LINE L2 0 3313 3222 300 167 0 0 chr1 12734657 12734711 -229929642 - Alu SINE Alu -1 301 248 320 271 193 28 chr1 12735334 12735515 -229928838 + MIR SINE MIR 52 262 0 311 313 9 9 chr1 12735526 12735638 -229928715 + L3 LINE CR1 1430 1541 -36 2239 126 0 0 chr1 12736305 12736607 -229927746 + AluSx SINE Alu 1 302 -10 542 15 15 0 chr1 12736634 12736701 -229927652 + (TGGA)n Simple_repeat Simple_repeat 1 68 0 243 266 9 37 chr1 12736726 12736793 -229927560 + (TGGA)n Simple_repeat Simple_repeat 3 67 -41 1573 172 36 21 chr1 12736793 12737177 -229927176 + MLT1B LTR MaLR 1 390 0 243 266 9 37 chr1 12737177 12737218 -229927135 + (TGGA)n Simple_repeat Simple_repeat 67 108 0 263 232 0 10 chr1 12737231 12737330 -229927023 + (TGGG)n Simple_repeat Simple_repeat 2 99 0 809 155 0 42 chr1 12738221 12738363 -229925990 + AluJo SINE Alu 1 136 -176 2433 103 3 0 chr1 12738363 12738675 -229925678 + AluSq SINE Alu 1 313 0 373 270 103 107 chr1 12738730 12738963 -229925390 + MIR SINE MIR 17 248 -14 346 225 307 0 chr1 12739430 12739648 -229924705 + L2 LINE L2 2355 2639 -675 2784 262 59 21 chr1 12739686 12740070 -229924283 - L1ME3A LINE L1 -10 6160 5792 2058 155 7 0 chr1 12740070 12740366 -229923987 - AluSx SINE Alu -14 298 1 2784 262 59 21 chr1 12740366 12741149 -229923204 - L1ME3A LINE L1 -378 5792 4942 2009 149 3 16 chr1 12741193 12741509 -229922844 - AluJb SINE Alu 0 312 1 255 104 31 62 chr1 12741714 12741810 -229922543 + GA-rich Low_complexity Low_complexity 4 96 0 453 143 12 0 chr1 12742748 12742832 -229921521 - MIR SINE MIR -58 150 66 2253 109 0 7 chr1 12742913 12743215 -229921138 + AluSq SINE Alu 1 300 -13 2310 118 0 6 chr1 12743524 12743838 -229920515 + AluSx SINE Alu 1 312 0 337 213 291 0 chr1 12744784 12744911 -229919442 + MER5A DNA MER1_type 10 173 -16 402 234 38 13 chr1 12745000 12745117 -229919236 - MIR SINE MIR -63 145 25 2322 112 0 3 chr1 12745188 12745491 -229918862 - AluSx SINE Alu -10 302 1 664 128 29 0 chr1 12745788 12745890 -229918463 + U6 snRNA snRNA 1 105 -2 202 365 10 10 chr1 12745894 12745990 -229918363 + L2 LINE L2 2766 2861 -453 239 308 92 23 chr1 12746031 12746161 -229918192 + L2 LINE L2 2937 3075 -197 1460 224 24 15 chr1 12746173 12746513 -229917840 - MLT1E2 LTR MaLR -177 449 107 1573 146 94 26 chr1 12746549 12746816 -229917537 + AluJb SINE Alu 1 285 -27 2147 129 131 32 chr1 12747295 12747373 -229916980 - LTR19A LTR ERV1 0 486 417 2489 93 3 0 chr1 12747373 12747685 -229916668 + AluSp SINE Alu 1 313 0 2147 129 131 32 chr1 12747685 12748048 -229916305 - LTR19A LTR ERV1 -69 417 1 453 177 21 135 chr1 12748118 12748310 -229916043 + MLT1D LTR MaLR 62 231 -274 881 119 0 15 chr1 12748387 12748521 -229915832 + AluJo/FLAM SINE Alu 1 132 -170 2417 83 7 0 chr1 12748521 12748811 -229915542 - AluSx SINE Alu -20 292 1 559 172 0 0 chr1 12748830 12748929 -229915424 - FLAM_C SINE Alu -4 139 41 273 214 18 0 chr1 12749151 12749207 -229915146 + LTR67 LTR ERVL 97 153 -404 * 471 267 75 83 chr1 12749168 12749554 -229914799 + MLT1J LTR MaLR 110 492 -19 195 321 74 74 chr1 12750476 12750772 -229913581 + L2 LINE L2 2977 3272 0 1674 163 21 18 chr1 12751232 12751539 -229912814 - AluJo SINE Alu 0 308 1 217 250 0 0 chr1 12751660 12751716 -229912637 + GA-rich Low_complexity Low_complexity 1 56 0 318 153 0 0 chr1 12752522 12752581 -229911772 + (CA)n Simple_repeat Simple_repeat 2 60 0 225 211 0 135 chr1 12753301 12753457 -229910896 + (CCCCG)n Simple_repeat Simple_repeat 2 136 0 1860 114 4 4 chr1 12754349 12754613 -229909740 - AluSx SINE Alu -8 304 41 1388 285 102 1 chr1 12754740 12755260 -229909093 + L2 LINE L2 2732 3309 -4 360 242 133 8 chr1 12755360 12755480 -229908873 - L2 LINE L2 0 3272 3138 222 174 139 35 chr1 12755565 12755651 -229908702 + L2 LINE L2 2999 3093 -179 557 211 13 39 chr1 12755659 12755815 -229908538 - L2 LINE L2 -211 3061 2910 221 340 99 7 chr1 12756405 12756546 -229907807 + L2 LINE L2 2966 3119 -153 249 196 0 0 chr1 12756768 12756814 -229907539 - MIR SINE MIR -12 250 205 265 235 31 41 chr1 12756827 12756925 -229907428 + LTR16A1 LTR ERVL 3 99 -358 * 715 194 152 9 chr1 12756915 12757126 -229907227 + LTR16A1 LTR ERVL 217 457 0 548 296 10 40 chr1 12757128 12757327 -229907026 - MIR SINE MIR -62 200 8 2092 123 3 16 chr1 12757377 12757693 -229906660 + AluSx SINE Alu 1 312 0 430 276 15 14 chr1 12758187 12758333 -229906020 + MIR SINE MIR 15 148 -60 181 338 105 46 chr1 12758721 12759044 -229905309 + L2 LINE L2 2904 3245 -27 1218 55 0 16 chr1 12760976 12761159 -229903194 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 359 337 72 28 chr1 12761160 12761356 -229902997 + L1M4 LINE L1 3118 3329 -2817 243 0 0 0 chr1 12761356 12761383 -229902970 + (GA)n Simple_repeat Simple_repeat 2 28 0 359 337 72 28 chr1 12761383 12761435 -229902918 + L1M4 LINE L1 3329 3377 -2769 243 311 35 0 chr1 12761437 12761546 -229902807 - MIR SINE MIR -63 145 54 268 319 175 9 chr1 12762079 12762246 -229902107 - MIR SINE MIR -11 251 49 189 0 0 0 chr1 12762246 12762267 -229902086 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 268 319 175 9 chr1 12762267 12762289 -229902064 - MIR SINE MIR -213 49 32 * 343 340 80 25 chr1 12762271 12762433 -229901920 - L2 LINE L2 -37 3276 3106 349 331 21 21 chr1 12762544 12762689 -229901664 - MIR SINE MIR -10 252 108 286 206 8 13 chr1 12762805 12762882 -229901471 + MIR3 SINE MIR 92 170 -38 253 311 0 48 chr1 12763308 12763411 -229900942 + MIR SINE MIR 91 188 -74 886 124 0 29 chr1 12764545 12764682 -229899671 - FLAM_C SINE Alu 0 133 1 517 303 79 22 chr1 12764910 12765138 -229899215 - MIR SINE MIR -21 241 1 294 260 104 15 chr1 12765139 12765264 -229899089 - MIR3 SINE MIR -48 160 29 249 317 85 0 chr1 12765697 12765779 -229898574 - L2 LINE L2 -41 3231 3143 401 317 41 0 chr1 12766393 12766516 -229897837 + MIR SINE MIR 118 245 -17 505 291 73 55 chr1 12766793 12767013 -229897340 + MIR SINE MIR 31 254 -8 1027 114 0 0 chr1 12767014 12767154 -229897199 - AluSg/x SINE Alu -8 302 163 2121 106 0 13 chr1 12767523 12767825 -229896528 + AluSq SINE Alu 1 298 -15 315 319 145 0 chr1 12768033 12768171 -229896182 + L2 LINE L2 2600 2757 -557 527 301 42 67 chr1 12768198 12768437 -229895916 + MIR SINE MIR 9 241 -21 2117 97 0 14 chr1 12768584 12768897 -229895456 - AluSx SINE Alu 0 309 1 299 321 66 0 chr1 12769488 12769625 -229894728 - MIR3 SINE MIR -33 175 30 2178 96 0 0 chr1 12770282 12770562 -229893791 + AluSx SINE Alu 1 280 -32 1140 49 0 0 chr1 12770562 12770705 -229893648 + (GGAGAA)n Simple_repeat Simple_repeat 3 145 0 490 314 0 7 chr1 12771630 12771770 -229892583 - MIR3 SINE MIR -67 141 3 524 266 76 6 chr1 12772402 12772560 -229891793 - MIR SINE MIR -74 188 20 627 284 191 34 chr1 12772944 12772991 -229891362 - L2 LINE L2 -13 3300 3262 922 189 122 10 chr1 12772991 12773187 -229891166 + MER20 DNA MER1_type 1 218 -1 627 284 191 34 chr1 12773187 12773494 -229890859 - L2 LINE L2 -51 3262 2890 2088 121 0 34 chr1 12773516 12773839 -229890514 + AluSx SINE Alu 1 312 0 1917 129 0 42 chr1 12773854 12774165 -229890188 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr1 12774633 12774654 -229889699 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 375 291 112 63 chr1 12775301 12775524 -229888829 + MIR SINE MIR 16 249 -13 194 339 108 15 chr1 12775937 12776132 -229888221 - L2 LINE L2 -556 2758 2546 23 33 0 0 chr1 12777876 12777906 -229886447 + GC_rich Low_complexity Low_complexity 1 30 0 1540 113 106 68 chr1 12778232 12778525 -229885828 - AluJo SINE Alu -8 304 1 204 206 0 0 chr1 12778531 12778565 -229885788 + MIR SINE MIR 29 62 -200 207 333 38 38 chr1 12779477 12779609 -229884744 + L2 LINE L2 2300 2431 -883 360 210 50 50 chr1 12780209 12780309 -229884044 - L2 LINE L2 -20 3293 3194 857 180 9 68 chr1 12780840 12781062 -229883291 + MER20 DNA MER1_type 7 215 -4 290 340 33 26 chr1 12781224 12781377 -229882976 + L2 LINE L2 2919 3072 -200 225 0 0 0 chr1 12781835 12781860 -229882493 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 197 268 0 0 chr1 12782255 12782296 -229882057 - L2 LINE L2 -10 3303 3263 381 269 162 9 chr1 12782315 12782463 -229881890 - MER5A DNA MER1_type -1 188 7 381 238 31 31 chr1 12783212 12783327 -229881026 + MIR3 SINE MIR 42 160 -48 499 304 71 0 chr1 12783327 12783511 -229880842 + MER117 DNA MER1_type 1 197 0 381 238 31 31 chr1 12783511 12783549 -229880804 + MIR3 SINE MIR 160 196 -12 1959 145 14 0 chr1 12783793 12784083 -229880270 - AluJb SINE Alu -18 294 1 1972 113 0 35 chr1 12784083 12784394 -229879959 - AluSx SINE Alu -12 300 1 721 185 37 0 chr1 12784429 12784564 -229879789 - FLAM_C SINE Alu -3 140 1 24 32 0 0 chr1 12784606 12784637 -229879716 + AT_rich Low_complexity Low_complexity 1 31 0 937 274 161 13 chr1 12784701 12785091 -229879262 + L2 LINE L2 2863 3310 -3 1206 112 0 0 chr1 12785109 12785270 -229879083 - AluSg/x SINE Alu -14 296 136 2298 70 0 7 chr1 12785274 12785575 -229878778 - AluSg SINE Alu -11 299 1 297 330 28 65 chr1 12785970 12786294 -229878059 - L1ME LINE L1 -382 5780 5469 540 297 23 76 chr1 12787191 12787857 -229876496 - L1M3 LINE L1 -665 5518 4890 2142 141 0 0 chr1 12787906 12788218 -229876135 - AluJb SINE Alu 0 312 1 539 310 125 34 chr1 12788220 12788585 -229875768 - L1ME LINE L1 -1089 5057 4624 2237 87 3 7 chr1 12788585 12788884 -229875469 - AluSc SINE Alu -11 298 1 539 310 125 34 chr1 12788884 12789070 -229875283 - L1ME LINE L1 -1522 4624 4456 2414 53 0 38 chr1 12790063 12790383 -229873970 + AluY SINE Alu 1 308 -3 327 254 41 49 chr1 12790383 12790505 -229873848 + L1ME4a LINE L1 5929 6049 -72 1902 155 0 19 chr1 12790517 12790827 -229873526 - AluSx SINE Alu -8 304 1 338 297 42 8 chr1 12790935 12791053 -229873300 + MIR3 SINE MIR 41 162 -46 728 257 76 34 chr1 12791988 12792225 -229872128 + MIR SINE MIR 4 250 -12 203 262 180 0 chr1 12792787 12792848 -229871505 + L2 LINE L2 3242 3313 0 355 225 0 0 chr1 12792856 12792927 -229871426 - MIR SINE MIR -75 187 117 416 238 21 63 chr1 12793025 12793168 -229871185 + L2 LINE L2 3134 3270 -2 816 282 32 0 chr1 12793706 12793926 -229870427 + MIR SINE MIR 2 228 -34 190 316 103 17 chr1 12793926 12794043 -229870310 + L2 LINE L2 3141 3267 -5 199 260 0 20 chr1 12794489 12794539 -229869814 + MIR SINE MIR 17 65 -197 670 261 83 15 chr1 12794674 12795097 -229869256 + MLT1G1 LTR MaLR 72 595 0 787 206 18 6 chr1 12795244 12795414 -229868939 - MER45A DNA AcHobo 0 178 7 349 259 0 0 chr1 12795652 12795733 -229868620 + MIR3 SINE MIR 85 165 -43 1892 131 7 17 chr1 12795877 12796175 -229868178 + AluJo SINE Alu 18 312 0 184 263 66 102 chr1 12796299 12796436 -229867917 + MIR SINE MIR 83 214 -48 294 374 8 8 chr1 12796495 12796626 -229867727 + MIR SINE MIR 15 145 -117 2210 122 0 0 chr1 12796799 12797102 -229867251 - AluSx SINE Alu -9 303 1 290 341 166 12 chr1 12797739 12798070 -229866283 + L2 LINE L2 2836 3217 -96 492 271 25 0 chr1 12798504 12798626 -229865727 - MIR SINE MIR -87 175 51 537 327 111 30 chr1 12799936 12800017 -229864336 + L3 LINE CR1 1209 1282 -295 2332 85 0 10 chr1 12800017 12800322 -229864031 - AluSq SINE Alu -11 302 1 537 327 111 30 chr1 12800322 12800573 -229863780 + L3 LINE CR1 1282 1568 -9 342 338 37 22 chr1 12802884 12803020 -229861333 - MIR SINE MIR -48 214 77 501 206 19 9 chr1 12803101 12803208 -229861145 - MER81 DNA DNA -2 112 5 1280 123 0 11 chr1 12804884 12805071 -229859282 + AluSx SINE Alu 1 185 -127 289 363 45 49 chr1 12805216 12805749 -229858604 - L2 LINE L2 -92 3180 2621 404 293 29 14 chr1 12805838 12805978 -229858375 + MIR3 SINE MIR 7 148 -60 203 359 39 0 chr1 12806157 12806235 -229858118 - MIR SINE MIR -50 212 132 842 272 46 13 chr1 12806793 12807032 -229857321 - MIR SINE MIR -2 260 14 21 0 0 0 chr1 12807211 12807232 -229857121 + AT_rich Low_complexity Low_complexity 1 21 0 252 77 0 0 chr1 12807241 12807280 -229857073 + (A)n Simple_repeat Simple_repeat 1 39 0 229 139 23 0 chr1 12807455 12807498 -229856855 + MADE1 DNA Mariner 1 44 -36 1693 32 0 28 chr1 12807718 12807935 -229856418 + SVA Other Other 1176 1386 0 2054 130 0 3 chr1 12808153 12808454 -229855899 - AluSx SINE Alu -12 300 1 2166 108 0 7 chr1 12809482 12809789 -229854564 - AluSg SINE Alu -5 305 1 2047 102 46 0 chr1 12810769 12811052 -229853301 - AluSx SINE Alu -16 296 1 2489 57 0 0 chr1 12811060 12811360 -229852993 - AluSc SINE Alu -9 300 1 297 283 171 13 chr1 12811362 12811514 -229852839 - MARNA DNA Mariner -194 392 217 324 290 109 7 chr1 12811628 12811766 -229852587 + L1ME LINE L1 5601 5752 -369 280 315 39 16 chr1 12811807 12811934 -229852419 + MIR SINE MIR 78 207 -55 2014 205 58 25 chr1 12811939 12811958 -229852395 + L1MC3 LINE L1 7270 7287 -498 2278 104 0 0 chr1 12811958 12812266 -229852087 - AluSx SINE Alu -4 308 1 2014 205 58 25 chr1 12812266 12812725 -229851628 + L1MC3 LINE L1 7287 7764 -21 2210 100 0 0 chr1 12812730 12813020 -229851333 + AluSg SINE Alu 1 290 -20 1626 141 65 10 chr1 12813028 12813318 -229851035 + AluJo SINE Alu 1 306 -6 2052 117 0 0 chr1 12813334 12813646 -229850707 - AluSx SINE Alu 0 312 1 29 0 0 0 chr1 12813653 12813682 -229850671 + AT_rich Low_complexity Low_complexity 1 29 0 1208 196 45 11 chr1 12814326 12814592 -229849761 + L1MC4 LINE L1 6814 7088 -954 2040 117 0 19 chr1 12814603 12814919 -229849434 + AluSx SINE Alu 1 310 -2 1718 272 79 11 chr1 12814919 12815540 -229848813 + L1MC4 LINE L1 7238 7900 -142 2295 88 0 0 chr1 12815681 12815986 -229848367 + AluSg SINE Alu 1 305 -5 874 188 172 0 chr1 12815994 12816180 -229848173 + MER20 DNA MER1_type 1 218 -1 433 290 74 6 chr1 12816208 12816370 -229847983 + MIR SINE MIR 57 229 -33 213 39 0 0 chr1 12816949 12816975 -229847378 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 205 301 36 0 chr1 12817418 12817501 -229846852 + MIR SINE MIR 62 147 -61 591 283 24 0 chr1 12817947 12818113 -229846240 - MIR SINE MIR -37 225 56 206 208 19 0 chr1 12818172 12818225 -229846128 + GA-rich Low_complexity Low_complexity 2 55 0 491 284 6 35 chr1 12819367 12819536 -229844817 - MIR SINE MIR -88 174 11 624 204 161 0 chr1 12819673 12819835 -229844518 - MER5A DNA MER1_type -1 188 1 2104 83 0 28 chr1 12819929 12820275 -229844078 - AluSg SINE Alu 0 338 1 223 293 98 0 chr1 12820320 12820402 -229843951 - MIR SINE MIR -87 175 86 1953 117 7 17 chr1 12820508 12820806 -229843547 + AluSx SINE Alu 1 295 -17 2024 119 20 0 chr1 12821688 12821981 -229842372 + AluSx SINE Alu 1 299 -13 250 302 56 24 chr1 12821983 12822109 -229842244 - Charlie8 DNA MER1_type -2196 221 92 2112 136 0 0 chr1 12822142 12822452 -229841901 - AluSx SINE Alu -2 310 1 374 118 17 17 chr1 12822608 12822678 -229841675 - AluS SINE Alu -246 57 1 936 172 7 0 chr1 12822681 12822858 -229841495 + AluJo/FRAM SINE Alu 132 309 0 2202 114 0 0 chr1 12823056 12823362 -229840991 + AluSx SINE Alu 1 306 -6 2135 105 6 13 chr1 12823740 12824054 -229840299 + AluSx SINE Alu 1 312 0 432 149 32 0 chr1 12824105 12824199 -229840154 + GA-rich Low_complexity Low_complexity 3 99 0 1336 143 120 23 chr1 12824348 12824630 -229839723 - AluJb SINE Alu 0 307 1 878 207 46 50 chr1 12825380 12825641 -229838712 - MIR SINE MIR -2 260 1 985 102 0 0 chr1 12825649 12825777 -229838576 + AluSq/x SINE Alu 11 138 -174 1695 96 4 0 chr1 12825778 12826007 -229838346 + AluSq SINE Alu 6 235 -78 730 259 80 13 chr1 12826039 12826183 -229838170 + MLT1D LTR MaLR 216 349 -156 1866 141 4 0 chr1 12826183 12826460 -229837893 - AluSx SINE Alu -17 295 18 730 259 80 13 chr1 12826460 12826563 -229837790 + MLT1D LTR MaLR 349 505 0 295 322 148 19 chr1 12826740 12827010 -229837343 + L2 LINE L2 2236 2540 -774 738 143 17 8 chr1 12827011 12827130 -229837223 + AluJo/FLAM SINE Alu 1 120 -192 1957 69 4 15 chr1 12827131 12827392 -229836961 + AluY SINE Alu 50 307 -4 528 269 229 32 chr1 12827410 12827982 -229836371 + L2 LINE L2 2596 3313 0 409 317 174 17 chr1 12827983 12828155 -229836198 + L3 LINE CR1 1135 1279 -298 2236 97 7 3 chr1 12828155 12828464 -229835889 + AluSq SINE Alu 1 310 -3 2364 84 0 3 chr1 12828464 12828772 -229835581 + AluSg SINE Alu 1 307 -3 409 317 174 17 chr1 12828772 12828891 -229835462 + L3 LINE CR1 1278 1473 -104 196 241 23 81 chr1 12829212 12829299 -229835054 + MIR SINE MIR 65 146 -62 21 0 0 0 chr1 12829722 12829743 -229834610 + GC_rich Low_complexity Low_complexity 1 21 0 1819 120 53 7 chr1 12829945 12830228 -229834125 - AluSg SINE Alu -14 296 1 2121 103 7 0 chr1 12830686 12830978 -229833375 + AluSx SINE Alu 5 298 -14 2078 114 3 0 chr1 12830982 12831280 -229833073 + AluSx SINE Alu 1 299 -13 673 334 37 40 chr1 12831473 12832134 -229832219 + L1ME4a LINE L1 5383 6035 -86 24 32 0 0 chr1 12832211 12832242 -229832111 + AT_rich Low_complexity Low_complexity 1 31 0 2230 102 3 0 chr1 12832252 12832556 -229831797 + AluSq SINE Alu 1 305 -8 473 115 115 0 chr1 12832568 12832646 -229831707 + FRAM SINE Alu 74 160 -16 1374 61 0 0 chr1 12834734 12834988 -229829365 + (TGGA)n Simple_repeat Simple_repeat 1 254 0 1416 72 0 3 chr1 12835013 12835372 -229828981 + (TGGA)n Simple_repeat Simple_repeat 1 359 0 533 204 8 0 chr1 12835395 12835527 -229828826 + (TGGA)n Simple_repeat Simple_repeat 4 136 0 736 167 26 0 chr1 12836319 12836433 -229827920 + FLAM_C SINE Alu 2 118 -15 272 279 60 103 chr1 12836480 12837014 -229827339 + L1ME LINE L1 5313 5823 -298 339 261 100 39 chr1 12837189 12837319 -229827034 - MIR SINE MIR 0 262 125 2191 113 3 3 chr1 12838383 12838693 -229825660 - AluSx SINE Alu -2 310 1 592 282 138 0 chr1 12839070 12839265 -229825088 - MIR SINE MIR -12 250 29 194 158 26 0 chr1 12839347 12839385 -229824968 + MIR SINE MIR 78 116 -92 1297 199 51 1 chr1 12839387 12839846 -229824507 - MLT1F LTR MaLR 0 567 24 308 248 177 35 chr1 12840322 12840463 -229823890 + MIR3 SINE MIR 17 177 -31 692 221 44 0 chr1 12840565 12840723 -229823630 + MIR SINE MIR 33 197 -65 1663 184 10 0 chr1 12841278 12841571 -229822782 + AluJo SINE Alu 1 296 -16 187 247 212 0 chr1 12841574 12841659 -229822694 - MIR SINE MIR -130 132 30 288 283 17 8 chr1 12842312 12842432 -229821921 + L2 LINE L2 2865 2985 -328 408 283 65 0 chr1 12842448 12842586 -229821767 + L1MA10 LINE L1 6180 6326 -8 386 244 326 4 chr1 12842611 12842853 -229821500 + L2 LINE L2 2994 3313 0 411 183 0 0 chr1 12843883 12843965 -229820388 + (CA)n Simple_repeat Simple_repeat 1 82 0 1027 169 0 11 chr1 12844400 12844578 -229819775 + FRAM SINE Alu 1 176 0 230 247 39 13 chr1 12844834 12844911 -229819442 - L2 LINE L2 -4 3309 3231 614 254 120 30 chr1 12844911 12845277 -229819076 - L2 LINE L2 -537 2777 2379 248 282 59 0 chr1 12845336 12845421 -229818932 - L2 LINE L2 -218 3054 2965 947 164 0 0 chr1 12845961 12846113 -229818240 + FRAM SINE Alu 14 165 -11 416 293 87 45 chr1 12846149 12846349 -229818004 + MIR SINE MIR 12 219 -43 265 220 230 20 chr1 12846555 12846655 -229817698 + L2 LINE L2 3193 3313 0 2075 69 62 21 chr1 12846661 12846949 -229817404 + AluSq SINE Alu 1 300 -13 1981 131 0 7 chr1 12846979 12847276 -229817077 + AluSx SINE Alu 1 295 -17 1704 145 10 20 chr1 12847368 12847665 -229816688 + AluJo SINE Alu 1 294 -18 356 276 71 0 chr1 12847900 12847998 -229816355 - LTR40a LTR ERVL -319 200 96 283 231 0 15 chr1 12848062 12848127 -229816226 - MLT1B LTR MaLR 0 390 327 1270 147 0 0 chr1 12848127 12848318 -229816035 - AluSp SINE Alu -4 309 119 535 58 14 0 chr1 12848421 12848490 -229815863 - Alu SINE Alu -238 71 2 919 158 7 0 chr1 12848642 12848794 -229815559 + AluSg/x SINE Alu 144 296 -16 1140 158 0 0 chr1 12850318 12850495 -229813858 + FRAM SINE Alu 1 176 0 198 0 0 0 chr1 12850498 12850520 -229813833 + (A)n Simple_repeat Simple_repeat 1 22 0 1855 166 0 0 chr1 12850525 12850820 -229813533 + AluJo SINE Alu 1 295 -17 2307 103 0 0 chr1 12850823 12851133 -229813220 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr1 12851133 12851156 -229813197 + AT_rich Low_complexity Low_complexity 1 23 0 223 187 0 40 chr1 12851568 12851643 -229812710 + CT-rich Low_complexity Low_complexity 5 76 0 2228 85 3 0 chr1 12853956 12854249 -229810104 + AluSp SINE Alu 1 294 -19 185 314 29 0 chr1 12854412 12854482 -229809871 - MIR SINE MIR -67 141 70 2380 63 7 0 chr1 12854719 12855018 -229809335 - AluY SINE Alu -10 301 1 2234 101 0 13 chr1 12855197 12855513 -229808840 - AluSx SINE Alu 0 312 1 2158 149 147 29 chr1 12855778 12856119 -229808234 + MSTB2 LTR MaLR 1 399 -58 2081 103 3 39 chr1 12856119 12856252 -229808101 + AluSc SINE Alu 1 137 -172 2295 57 0 4 chr1 12856252 12856564 -229807789 + AluY SINE Alu 1 311 0 2081 103 3 39 chr1 12856564 12856741 -229807612 + AluSc SINE Alu 137 301 -8 2158 149 147 29 chr1 12856741 12856808 -229807545 + MSTB2 LTR MaLR 399 457 0 1630 193 21 56 chr1 12856928 12856970 -229807383 + MLT1A1 LTR MaLR 5 47 -318 1694 174 30 13 chr1 12856970 12857269 -229807084 - AluJb SINE Alu -8 304 1 1630 193 21 56 chr1 12857269 12857599 -229806754 + MLT1A1 LTR MaLR 47 364 -1 1882 115 45 10 chr1 12857683 12857971 -229806382 - AluJb SINE Alu -14 298 1 1797 179 0 13 chr1 12858015 12858328 -229806025 + AluJo SINE Alu 1 309 -3 837 291 130 23 chr1 12858330 12858815 -229805538 - MLT1K LTR MaLR -33 555 19 374 296 94 19 chr1 12858821 12858980 -229805373 - MIR SINE MIR -80 182 12 349 268 101 53 chr1 12859231 12859296 -229805057 - L2 LINE L2 -64 3208 3148 4339 176 44 54 chr1 12859296 12860260 -229804093 + LTR13 LTR ERVK 1 954 0 349 268 101 53 chr1 12860260 12860422 -229803931 - L2 LINE L2 -124 3148 2970 1791 126 40 11 chr1 12860479 12860757 -229803596 - AluJo SINE Alu -22 290 5 206 324 15 0 chr1 12860942 12861010 -229803343 - MIR3 SINE MIR -53 155 87 1933 215 46 73 chr1 12861097 12861117 -229803236 + MLT2B3 LTR ERVL 1 20 -534 1813 81 0 12 chr1 12861117 12861363 -229802990 + AluSg/x SINE Alu 70 312 0 1933 215 46 73 chr1 12861363 12861904 -229802449 + MLT2B3 LTR ERVL 20 547 -7 2336 64 0 3 chr1 12862067 12862362 -229801991 + AluSx SINE Alu 1 294 -18 225 104 83 0 chr1 12862373 12862421 -229801932 + L1MA3 LINE L1 6254 6305 0 774 75 0 50 chr1 12862746 12862866 -229801487 + U5 snRNA snRNA 2 115 -1 228 170 0 0 chr1 12863076 12863129 -229801224 + (CGGGG)n Simple_repeat Simple_repeat 5 57 0 2391 56 0 34 chr1 12863166 12863486 -229800867 - AluSx SINE Alu -3 309 1 383 201 190 4 chr1 12863529 12863683 -229800670 + MLT1J LTR MaLR 1 140 -310 1334 159 19 41 chr1 12863876 12864147 -229800206 - MER1B DNA MER1_type 0 339 75 813 83 0 42 chr1 12864401 12864521 -229799832 - U5 snRNA snRNA -1 115 1 261 71 0 0 chr1 12864896 12864939 -229799414 + HSMAR1 DNA Mariner 1 43 -37 21 36 0 0 chr1 12864987 12865015 -229799338 + AT_rich Low_complexity Low_complexity 1 28 0 760 168 8 0 chr1 12865018 12865143 -229799210 + FLAM_C SINE Alu 1 126 -7 349 230 80 0 chr1 12865158 12865258 -229799095 + MER5A DNA MER1_type 82 189 0 378 85 41 0 chr1 12865509 12865580 -229798773 + AluJ/FLAM SINE Alu 1 57 -245 213 248 205 0 chr1 12865706 12865823 -229798530 + L2 LINE L2 1046 1186 -2128 2206 102 0 0 chr1 12865911 12866215 -229798138 + AluSx SINE Alu 1 304 -8 1639 171 90 38 chr1 12866460 12866806 -229797547 + MLT1A1 LTR MaLR 2 365 0 224 235 20 0 chr1 12866863 12866914 -229797439 + GA-rich Low_complexity Low_complexity 1 52 0 2302 77 10 0 chr1 12867023 12867321 -229797032 + AluSx SINE Alu 1 301 -11 1267 245 47 1 chr1 12867326 12867712 -229796641 + L1MB5 LINE L1 5663 6105 -79 22 0 0 0 chr1 12867756 12867778 -229796575 + AT_rich Low_complexity Low_complexity 1 22 0 237 170 0 0 chr1 12867778 12867825 -229796528 - Alu SINE Alu -169 133 87 790 187 0 8 chr1 12867832 12867966 -229796387 - FLAM_C SINE Alu 0 133 1 352 259 93 76 chr1 12867968 12868018 -229796335 - L1M4 LINE L1 -2065 4081 4033 2118 123 7 0 chr1 12868018 12868320 -229796033 - AluSc SINE Alu -5 304 1 352 259 93 76 chr1 12868320 12868491 -229795862 - L1M4 LINE L1 -2113 4033 3851 2024 132 3 0 chr1 12868491 12868787 -229795566 - AluSx SINE Alu -13 299 3 352 259 93 76 chr1 12868787 12868865 -229795488 - L1M4 LINE L1 -2295 3851 3776 1103 178 0 0 chr1 12868874 12869059 -229795294 - AluJ SINE Alu -9 303 119 276 269 93 0 chr1 12869063 12869171 -229795182 - L1MC4a LINE L1 -1655 6153 6036 819 142 47 0 chr1 12869203 12869330 -229795023 - AluJ SINE Alu -178 134 2 261 0 0 0 chr1 12869361 12869390 -229794963 + (TG)n Simple_repeat Simple_repeat 2 30 0 2170 129 0 0 chr1 12869422 12869733 -229794620 - AluSx SINE Alu 0 312 2 2064 123 0 3 chr1 12869739 12870039 -229794314 - AluSx SINE Alu -13 299 1 529 318 11 49 chr1 12870039 12870303 -229794050 - LTR24B-int LTR ERV1 -4869 254 1 651 164 72 12 chr1 12870303 12870468 -229793885 - LTR24B LTR ERV1 0 569 277 2442 81 0 0 chr1 12870491 12870800 -229793553 - AluSg SINE Alu -1 309 1 1731 115 93 0 chr1 12870801 12871079 -229793274 - AluSx SINE Alu -8 304 1 1763 148 7 10 chr1 12871079 12871376 -229792977 - AluJb SINE Alu -16 296 1 825 174 0 0 chr1 12871534 12871666 -229792687 + FLAM_C SINE Alu 2 133 0 472 309 42 75 chr1 12871697 12871987 -229792366 + L1ME LINE L1 5313 5593 -528 1929 149 0 0 chr1 12871987 12872275 -229792078 - AluSx SINE Alu -24 288 1 472 309 42 75 chr1 12872275 12872375 -229791978 + L1ME LINE L1 5593 5695 -426 1077 117 32 0 chr1 12872382 12872536 -229791817 - AluSg/x SINE Alu -16 294 136 2155 102 0 3 chr1 12872541 12872836 -229791517 - AluY SINE Alu -17 294 1 209 200 0 0 chr1 12872882 12872917 -229791436 + polypurine Low_complexity Low_complexity 2 36 0 2533 45 0 3 chr1 12874615 12874926 -229789427 - AluY SINE Alu -1 310 1 345 113 32 0 chr1 12874951 12875013 -229789340 - HY3 scRNA scRNA -1 100 37 263 270 35 58 chr1 12875029 12875203 -229789150 - L1MEc LINE L1 -4727 1669 1500 446 293 14 117 chr1 12875203 12875555 -229788798 - L1MC5 LINE L1 -344 7617 7302 2350 90 3 0 chr1 12875665 12875975 -229788378 - AluY SINE Alu 0 311 1 824 119 0 60 chr1 12875986 12876120 -229788233 - FLAM_A SINE Alu -7 126 1 230 283 0 0 chr1 12876148 12876201 -229788152 + Charlie8 DNA MER1_type 1 53 -2364 2060 98 51 0 chr1 12876265 12876560 -229787793 - AluSx SINE Alu 0 312 3 2248 104 3 0 chr1 12876587 12876896 -229787457 - AluSg SINE Alu 0 310 1 725 143 0 53 chr1 12876901 12877034 -229787319 - FLAM_C SINE Alu -7 126 1 69 13 0 0 chr1 12877036 12877112 -229787241 + AT_rich Low_complexity Low_complexity 1 76 0 342 202 124 11 chr1 12877178 12877267 -229787086 - MIR SINE MIR -132 130 32 1191 129 0 5 chr1 12877874 12878330 -229786023 + (TCCA)n Simple_repeat Simple_repeat 2 631 0 590 285 36 6 chr1 12878839 12879004 -229785349 + MIR SINE MIR 24 193 -69 733 185 7 22 chr1 12879412 12879547 -229784806 + FLAM_A SINE Alu 1 133 0 2002 125 7 0 chr1 12879566 12879862 -229784491 + AluSx SINE Alu 1 298 -14 255 302 52 35 chr1 12880557 12880673 -229783680 - HERVL66 LTR ERVL -2770 1559 1442 361 210 64 95 chr1 12880693 12880738 -229783615 + MIR3 SINE MIR 10 55 -200 1650 160 26 13 chr1 12880738 12881045 -229783308 - AluJo SINE Alu 0 312 2 361 210 64 95 chr1 12881045 12881194 -229783159 + MIR3 SINE MIR 55 192 -63 1227 212 25 96 chr1 12881526 12881974 -229782379 - LTR5 LTR ERVK -14 955 540 2170 66 59 0 chr1 12881974 12882261 -229782092 - AluY SINE Alu -7 304 1 2723 188 13 6 chr1 12882271 12882807 -229781546 - LTR5 LTR ERVK -429 540 1 261 203 0 95 chr1 12882813 12882887 -229781466 + Charlie8 DNA MER1_type 1360 1426 -991 2069 129 0 22 chr1 12882906 12883224 -229781129 - AluSx SINE Alu -1 311 1 217 260 0 0 chr1 12884085 12884135 -229780218 + MIR SINE MIR 67 116 -92 2170 115 0 13 chr1 12884307 12884620 -229779733 + AluSx SINE Alu 1 309 -3 287 286 0 0 chr1 12884662 12884739 -229779614 + MIR SINE MIR 141 217 -45 2024 125 3 7 chr1 12885728 12886031 -229778322 - AluSx SINE Alu -10 302 1 183 322 186 0 chr1 12886541 12886659 -229777694 + L2 LINE L2 3132 3271 -42 915 84 7 77 chr1 12887223 12887366 -229776987 + AluJo SINE Alu 4 136 -176 1891 155 7 3 chr1 12887869 12888179 -229776174 - AluSx SINE Alu 0 312 2 22 0 0 0 chr1 12888228 12888250 -229776103 + AT_rich Low_complexity Low_complexity 1 22 0 2416 70 0 6 chr1 12888251 12888564 -229775789 + AluY SINE Alu 1 311 0 23 0 0 0 chr1 12889888 12889911 -229774442 + AT_rich Low_complexity Low_complexity 1 23 0 694 135 0 0 chr1 12889947 12890051 -229774302 - AluJb SINE Alu -2 310 207 237 279 81 72 chr1 12890292 12890307 -229774046 + L2 LINE L2 2851 2864 -408 1785 191 75 85 chr1 12890307 12890814 -229773539 - MLT1D LTR MaLR 0 505 4 237 279 81 72 chr1 12890814 12891020 -229773333 + L2 LINE L2 2864 3074 -198 185 170 0 64 chr1 12891036 12891083 -229773270 + L2 LINE L2 3223 3266 -6 240 59 0 0 chr1 12891297 12891331 -229773022 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 215 315 130 0 chr1 12891459 12891567 -229772786 + MIR SINE MIR 3 124 -138 223 178 22 0 chr1 12891758 12891803 -229772550 + GA-rich Low_complexity Low_complexity 3 48 0 1788 141 0 7 chr1 12894934 12895241 -229769112 + AluJo SINE Alu 1 305 0 405 169 0 0 chr1 12895555 12895638 -229768715 + (CA)n Simple_repeat Simple_repeat 2 84 0 303 93 0 0 chr1 12895644 12895687 -229768666 + (TG)n Simple_repeat Simple_repeat 2 44 0 2051 119 0 0 chr1 12895688 12895973 -229768380 - AluSx SINE Alu -27 285 1 189 0 0 0 chr1 12896401 12896422 -229767931 + (ATTAG)n Simple_repeat Simple_repeat 2 22 0 458 229 57 0 chr1 12896457 12896562 -229767791 + L2 LINE L2 3202 3312 -1 852 240 125 49 chr1 12896611 12896721 -229767632 - MLT1G1 LTR MaLR 0 549 449 2026 117 7 7 chr1 12896721 12897021 -229767332 - AluSq SINE Alu -13 300 1 852 240 125 49 chr1 12897021 12897411 -229766942 - MLT1G1 LTR MaLR -100 449 2 1635 221 81 18 chr1 12897591 12898025 -229766328 - MLT1C LTR MaLR -4 463 3 1926 110 0 98 chr1 12899153 12899488 -229764865 + AluJb SINE Alu 1 302 0 1344 245 61 48 chr1 12899677 12900134 -229764219 + MLT1C LTR MaLR 5 467 0 1578 130 0 97 chr1 12900182 12900481 -229763872 + AluJo SINE Alu 6 275 -37 1068 194 134 0 chr1 12900527 12900780 -229763573 - LTR50 LTR ERVL -5 790 504 1053 236 91 86 chr1 12900848 12900891 -229763462 + L2 LINE L2 2709 2750 -563 2002 130 0 0 chr1 12900891 12901197 -229763156 + AluSg SINE Alu 1 306 0 1053 236 91 86 chr1 12901197 12901435 -229762918 + L2 LINE L2 2750 2985 -328 693 113 113 48 chr1 12901435 12901559 -229762794 - FLAM_C SINE Alu -1 132 1 1053 236 91 86 chr1 12901559 12901570 -229762783 + L2 LINE L2 2985 2994 -319 216 0 0 0 chr1 12901570 12901594 -229762759 + (TA)n Simple_repeat Simple_repeat 2 25 0 1669 152 7 14 chr1 12901594 12901883 -229762470 - AluJb SINE Alu -25 287 1 1053 236 91 86 chr1 12901883 12902025 -229762328 + L2 LINE L2 2994 3134 -179 2005 105 31 0 chr1 12902025 12902311 -229762042 - AluSx SINE Alu -17 295 1 1053 236 91 86 chr1 12902311 12902487 -229761866 + L2 LINE L2 3134 3313 0 227 186 0 0 chr1 12903106 12903149 -229761204 + (ATGGTG)n Simple_repeat Simple_repeat 5 47 0 326 250 42 10 chr1 12903153 12903249 -229761104 - LTR33 LTR ERVL -1 520 422 1781 177 3 3 chr1 12903266 12903577 -229760776 + AluJo SINE Alu 1 311 -1 292 250 36 0 chr1 12903812 12903896 -229760457 - LTR33 LTR ERVL -433 88 2 194 243 157 0 chr1 12903925 12903995 -229760358 + MIR SINE MIR 129 209 -53 1984 133 0 9 chr1 12904246 12904561 -229759792 + AluJb SINE Alu 1 312 0 618 269 186 44 chr1 12904858 12904925 -229759428 + MLT1H1 LTR MaLR 75 131 -424 1253 170 170 23 chr1 12904925 12905184 -229759169 - AluJo SINE Alu -5 297 1 2276 82 3 19 chr1 12905194 12905511 -229758842 - AluSp SINE Alu -1 312 1 618 269 186 44 chr1 12905511 12905909 -229758444 + MLT1H1 LTR MaLR 138 555 0 2093 135 21 31 chr1 12905984 12906021 -229758332 + MLT1B LTR MaLR 10 46 -344 1931 160 3 0 chr1 12906021 12906309 -229758044 + AluJo SINE Alu 1 289 -23 2093 135 21 31 chr1 12906309 12906371 -229757982 + MLT1B LTR MaLR 46 107 -283 451 143 26 0 chr1 12906371 12906448 -229757905 + MADE1 DNA Mariner 1 79 -1 2093 135 21 31 chr1 12906448 12906515 -229757838 + MLT1B LTR MaLR 107 173 -217 2473 93 0 0 chr1 12906515 12906818 -229757535 + AluSp SINE Alu 1 301 -12 2093 135 21 31 chr1 12906818 12907032 -229757321 + MLT1B LTR MaLR 173 390 0 2056 114 4 14 chr1 12907136 12907417 -229756936 + AluSx SINE Alu 1 278 -34 530 224 12 73 chr1 12907721 12907886 -229756467 - MLT1K LTR MaLR -2 586 432 203 185 0 19 chr1 12907983 12908037 -229756316 + GA-rich Low_complexity Low_complexity 1 53 0 1380 156 56 106 chr1 12908111 12908442 -229755911 - AluJo SINE Alu 0 312 6 360 0 0 0 chr1 12908580 12908620 -229755733 + (CA)n Simple_repeat Simple_repeat 2 41 0 1991 132 0 40 chr1 12908785 12909088 -229755265 + AluJb SINE Alu 1 291 -21 2344 107 3 0 chr1 12909233 12909541 -229754812 + AluSx SINE Alu 1 309 -3 250 314 65 72 chr1 12909829 12910135 -229754218 + L2 LINE L2 2917 3220 -52 341 242 228 0 chr1 12910162 12910311 -229754042 - MIR SINE MIR -70 192 10 316 278 7 69 chr1 12910423 12910487 -229753866 - MIR SINE MIR -4 258 192 2724 186 4 21 chr1 12910487 12910999 -229753354 - MLT1D LTR MaLR -2 503 1 316 278 7 69 chr1 12910999 12911078 -229753275 - MIR SINE MIR -70 192 124 321 26 0 0 chr1 12911676 12911714 -229752639 + (CA)n Simple_repeat Simple_repeat 1 38 0 291 277 30 102 chr1 12911957 12912123 -229752230 + MIR SINE MIR 13 166 -96 408 40 0 0 chr1 12912489 12912539 -229751814 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 1965 86 47 0 chr1 12912543 12912798 -229751555 - AluY SINE Alu -44 267 1 309 26 0 0 chr1 12913780 12913818 -229750535 + (CAG)n Simple_repeat Simple_repeat 3 40 0 285 99 0 0 chr1 12914834 12914888 -229749465 - MIR SINE MIR -62 146 101 320 251 43 129 chr1 12915959 12916122 -229748231 - MIR SINE MIR -93 169 21 2330 104 0 10 chr1 12916305 12916603 -229747750 + AluSq SINE Alu 1 295 -18 1806 155 9 40 chr1 12916624 12916946 -229747407 + AluJo SINE Alu 1 312 0 469 226 152 56 chr1 12917040 12917117 -229747236 - MIR SINE MIR -3 259 191 2301 113 3 0 chr1 12917117 12917419 -229746934 - AluSx SINE Alu -9 303 1 469 226 152 56 chr1 12917419 12917545 -229746808 - MIR SINE MIR -71 191 39 2106 133 13 28 chr1 12918125 12918442 -229745911 - AluJb SINE Alu 0 312 1 2222 126 0 7 chr1 12918456 12918765 -229745588 - AluSx SINE Alu -3 309 3 2184 79 7 4 chr1 12919023 12919332 -229745021 - AluY SINE Alu 0 314 5 734 234 122 100 chr1 12919694 12919838 -229744515 + LTR16C LTR ERVL 73 212 -279 1903 158 0 38 chr1 12919838 12920155 -229744198 - AluJo SINE Alu -7 305 1 734 234 122 100 chr1 12920155 12920184 -229744169 + LTR16C LTR ERVL 212 239 -252 1490 169 55 22 chr1 12920184 12920490 -229743863 + AluJb SINE Alu 2 316 0 734 234 122 100 chr1 12920490 12920724 -229743629 + LTR16C LTR ERVL 239 491 0 1668 86 0 0 chr1 12920766 12920963 -229743390 - AluSx SINE Alu -115 197 1 1213 238 130 42 chr1 12921012 12921501 -229742852 + MLT1F1 LTR MaLR 12 541 -26 710 178 8 0 chr1 12921520 12921649 -229742704 - FLAM_C SINE Alu -2 131 2 1653 180 46 3 chr1 12921649 12921932 -229742421 - AluJb SINE Alu -17 295 1 452 326 63 9 chr1 12923002 12923223 -229741130 + MIR SINE MIR 16 248 -14 227 232 7 167 chr1 12923276 12923342 -229741011 - MIR SINE MIR -56 206 178 2072 147 0 0 chr1 12923342 12923654 -229740699 - AluSx SINE Alu 0 312 1 227 232 7 167 chr1 12923654 12923736 -229740617 - MIR SINE MIR -84 178 85 2358 82 7 3 chr1 12925759 12926053 -229738300 + AluSc SINE Alu 1 295 -14 2597 47 0 3 chr1 12926053 12926354 -229737999 + AluY SINE Alu 1 300 -11 2027 157 3 0 chr1 12927288 12927582 -229736771 + AluJb SINE Alu 1 295 -17 185 346 0 0 chr1 12927876 12927954 -229736399 + L2 LINE L2 2901 2978 -335 2344 61 7 4 chr1 12929205 12929509 -229734844 + AluY SINE Alu 1 305 0 2132 120 0 0 chr1 12933111 12933421 -229730932 + AluJb SINE Alu 1 310 0 213 339 24 39 chr1 12934464 12934591 -229729762 + MIR SINE MIR 23 147 -115 994 250 105 15 chr1 12934638 12935030 -229729323 + MLT1C LTR MaLR 7 433 -34 260 359 36 10 chr1 12936832 12937024 -229727329 + L2 LINE L2 2893 3089 -183 1996 159 3 10 chr1 12937098 12937412 -229726941 + AluJo SINE Alu 1 312 0 539 237 0 9 chr1 12937484 12937598 -229726755 + MER58B DNA MER1_type 229 341 0 375 203 0 0 chr1 12938557 12938636 -229725717 + (CA)n Simple_repeat Simple_repeat 2 80 0 336 261 193 0 chr1 12940353 12940472 -229723881 + MIR SINE MIR 22 163 -99 402 287 87 13 chr1 12940487 12940637 -229723716 + MIR SINE MIR 76 236 -26 1665 189 61 0 chr1 12940706 12940986 -229723367 + AluJo SINE Alu 1 297 -15 573 165 149 0 chr1 12941097 12941218 -229723135 - MER58C DNA MER1_type 0 215 77 2156 134 7 0 chr1 12941218 12941525 -229722828 + AluSg SINE Alu 1 309 -1 2270 113 10 0 chr1 12941542 12941843 -229722510 + AluSx SINE Alu 1 304 -8 377 69 0 17 chr1 12941850 12941908 -229722445 + (TG)n Simple_repeat Simple_repeat 2 58 0 299 25 25 0 chr1 12941908 12941948 -229722405 + (TA)n Simple_repeat Simple_repeat 1 41 0 1230 191 53 44 chr1 12942043 12942384 -229721969 + MER2 DNA MER2_type 1 344 0 1940 106 109 7 chr1 12944967 12945242 -229719111 + AluSg SINE Alu 1 303 -7 284 182 15 0 chr1 12946538 12946604 -229717749 + L1PB1 LINE L1 6085 6151 0 2191 109 0 32 chr1 12946740 12947052 -229717301 + AluSx SINE Alu 1 302 -10 418 241 51 29 chr1 12947555 12947692 -229716661 + MIR SINE MIR 79 218 -44 493 239 26 26 chr1 12948389 12948593 -229715760 + MER58 DNA MER1_type 6 2414 -6 349 257 29 0 chr1 12949068 12949173 -229715180 - MER5A DNA MER1_type -16 173 66 1893 114 0 69 chr1 12949174 12949464 -229714889 - AluSp SINE Alu -9 304 35 880 178 6 0 chr1 12949494 12949657 -229714696 - L1PA16 LINE L1 -9 6157 5994 23 0 0 0 chr1 12950096 12950119 -229714234 + AT_rich Low_complexity Low_complexity 1 23 0 1734 184 57 0 chr1 12950130 12950413 -229713940 + AluJb SINE Alu 1 299 -13 234 271 10 31 chr1 12950685 12950781 -229713572 - L1ME LINE L1 -266 5904 5811 275 185 217 1 chr1 12950839 12950947 -229713406 - L1ME LINE L1 -330 5791 5663 380 241 36 76 chr1 12950982 12951106 -229713247 - L1ME LINE L1 -755 5391 5278 2136 110 10 3 chr1 12951106 12951397 -229712956 - AluSx SINE Alu -19 293 1 380 241 36 76 chr1 12951397 12951496 -229712857 - L1ME LINE L1 -868 5278 5177 2344 109 6 3 chr1 12951569 12951880 -229712473 - AluSq SINE Alu -1 312 1 2410 83 0 3 chr1 12951887 12952188 -229712165 - AluY SINE Alu -11 300 1 322 264 236 16 chr1 12952195 12952377 -229711976 - L1ME LINE L1 -1013 5133 4912 445 140 330 0 chr1 12952377 12952477 -229711876 - FRAM SINE Alu -22 154 22 453 313 54 19 chr1 12952718 12952977 -229711376 - L1ME LINE L1 -1404 4742 4475 930 113 81 6 chr1 12953486 12953646 -229710707 + MER30 DNA MER1_type 1 172 -58 744 177 0 0 chr1 12953759 12953883 -229710470 - FLAM_A SINE Alu -9 124 1 1109 143 80 27 chr1 12954183 12954407 -229709946 - MER46A DNA MER2_type 0 236 1 894 111 0 15 chr1 12954558 12954693 -229709660 - FLAM_C SINE Alu 0 133 1 924 164 0 20 chr1 12955435 12955587 -229708766 + AluJb SINE Alu 156 304 -8 1302 139 9 0 chr1 12956301 12956517 -229707836 - Tigger1 DNA MER2_type -1 2417 2200 693 150 94 0 chr1 12956513 12956640 -229707713 - Tigger1 DNA MER2_type -2279 139 1 * 210 268 282 28 chr1 12956902 12956978 -229707375 + MER5A DNA MER1_type 4 59 -130 2366 106 3 0 chr1 12956978 12957281 -229707072 + AluSx SINE Alu 1 304 -8 210 268 282 28 chr1 12957281 12957346 -229707007 + MER5A DNA MER1_type 59 181 -8 2527 40 0 3 chr1 12957622 12957921 -229706432 - AluY SINE Alu -13 298 1 207 176 0 0 chr1 12958144 12958178 -229706175 + CT-rich Low_complexity Low_complexity 2 35 0 1876 155 0 19 chr1 12958181 12958498 -229705855 - AluJb SINE Alu 0 312 2 432 130 0 0 chr1 12959294 12959363 -229704990 + (TG)n Simple_repeat Simple_repeat 1 69 0 220 298 11 11 chr1 12959455 12959549 -229704804 + (TG)n Simple_repeat Simple_repeat 1 94 0 454 309 0 6 chr1 12959580 12959761 -229704592 + (TG)n Simple_repeat Simple_repeat 1 180 0 889 238 24 10 chr1 12960041 12960247 -229704106 + MIR SINE MIR 18 226 -36 2069 130 0 0 chr1 12960250 12960557 -229703796 + AluY SINE Alu 1 307 -4 2163 127 0 0 chr1 12960602 12960910 -229703443 + AluSx SINE Alu 1 308 -4 1968 201 34 18 chr1 12961320 12961703 -229702650 - MLT1B LTR MaLR -1 389 1 2150 124 3 0 chr1 12961847 12962146 -229702207 - AluSx SINE Alu -12 300 1 802 269 54 31 chr1 12962146 12962387 -229701966 - MLT1C LTR MaLR 0 467 214 2175 82 16 30 chr1 12962387 12962691 -229701662 - AluSx SINE Alu -12 300 1 802 269 54 31 chr1 12962691 12962799 -229701554 - MLT1C LTR MaLR -253 214 110 5977 47 17 4 chr1 12962833 12963899 -229700454 - SVA Other Other -521 962 57 414 0 0 0 chr1 12963899 12963945 -229700408 + (GGGAGA)n Simple_repeat Simple_repeat 1 46 0 2061 118 30 7 chr1 12963994 12964299 -229700054 + AluSq SINE Alu 1 312 -1 287 177 16 0 chr1 12964299 12964355 -229699998 + MLT1B LTR MaLR 323 379 -11 204 40 0 0 chr1 12964378 12964403 -229699950 + (A)n Simple_repeat Simple_repeat 1 25 0 292 198 135 21 chr1 12964403 12964499 -229699854 - MLT1C LTR MaLR -360 107 1 1857 129 3 14 chr1 12965229 12965561 -229698792 - AluJo SINE Alu 0 329 1 394 241 11 0 chr1 12965563 12965650 -229698703 - MIR SINE MIR -100 162 75 2726 144 56 34 chr1 12965726 12966183 -229698170 + LTR64 LTR ERVK 2 447 -66 2285 87 3 0 chr1 12966183 12966482 -229697871 - AluSp SINE Alu -12 301 2 1626 179 0 29 chr1 12966483 12966796 -229697557 - AluJb SINE Alu -8 304 1 2726 144 56 34 chr1 12966796 12966837 -229697516 + LTR64 LTR ERVK 446 513 0 326 277 0 43 chr1 12967775 12967869 -229696484 - MIR SINE MIR -113 149 60 717 347 126 10 chr1 12968528 12968926 -229695427 - L2 LINE L2 -2 3270 2827 575 259 9 94 chr1 12968936 12969160 -229695193 + L2 LINE L2 3109 3313 0 2371 82 0 3 chr1 12969240 12969545 -229694808 - AluSc SINE Alu -5 304 1 1536 173 87 0 chr1 12969590 12969867 -229694486 + 7SLRNA srpRNA srpRNA 5 305 -15 2068 149 0 0 chr1 12969869 12970177 -229694176 - AluSx SINE Alu -4 308 1 2325 70 0 7 chr1 12970177 12970476 -229693877 - AluY SINE Alu -14 297 1 310 62 0 37 chr1 12970478 12970547 -229693806 - FAM SINE Alu 0 179 125 242 377 74 31 chr1 12970989 12971246 -229693107 - L2 LINE L2 -73 3240 2973 1927 137 31 0 chr1 12971526 12971819 -229692534 + AluSx SINE Alu 1 302 -10 1954 148 0 3 chr1 12972280 12972584 -229691769 - AluSx SINE Alu -9 303 1 2121 105 10 0 chr1 12972597 12972891 -229691462 - AluSx SINE Alu -15 297 1 253 104 149 15 chr1 12973007 12973074 -229691279 + L1M3 LINE L1 5293 5368 -812 565 178 187 0 chr1 12973076 12973183 -229691170 + FLAM_C SINE Alu 1 127 -16 1367 146 97 41 chr1 12973218 12973479 -229690874 + L1M3 LINE L1 5328 5614 -569 1779 157 3 20 chr1 12973479 12973779 -229690574 + AluJb SINE Alu 1 295 -17 1367 146 97 41 chr1 12973779 12973859 -229690494 + L1M3 LINE L1 5614 5688 -495 242 265 76 76 chr1 12975567 12975699 -229688654 - MIR SINE MIR -11 251 120 1053 101 0 0 chr1 12975812 12975951 -229688402 - AluSg/x SINE Alu -16 294 156 604 120 0 0 chr1 12975952 12976044 -229688309 + AluSp/q SINE Alu 215 306 -7 338 259 235 18 chr1 12976065 12976231 -229688122 + MIR SINE MIR 47 248 -14 690 302 146 29 chr1 12977777 12978221 -229686132 - L2 LINE L2 -3 3310 2815 2095 112 10 0 chr1 12978376 12978671 -229685682 - AluSg SINE Alu -12 298 1 1356 309 115 19 chr1 12978690 12979291 -229685062 - L2 LINE L2 -820 2494 1806 2104 127 0 13 chr1 12979291 12979605 -229684748 + AluSx SINE Alu 1 310 -2 1356 309 115 19 chr1 12979605 12979748 -229684605 - L2 LINE L2 -1508 1806 1678 386 326 29 47 chr1 12979752 12979924 -229684429 + MIR SINE MIR 62 230 -32 196 323 32 6 chr1 12979982 12980213 -229684140 - L2 LINE L2 -1672 1642 1370 2058 136 0 0 chr1 12980284 12980578 -229683775 - AluSx SINE Alu -18 294 1 1667 122 49 0 chr1 12980626 12980889 -229683464 + AluSq SINE Alu 24 299 -14 539 317 32 11 chr1 12980892 12981078 -229683275 - L2 LINE L2 -443 2871 2682 2125 162 12 83 chr1 12981078 12981241 -229683112 + L1MB3 LINE L1 5669 5842 -341 2087 131 0 0 chr1 12981241 12981553 -229682800 + AluSx SINE Alu 1 312 0 2125 162 12 83 chr1 12981553 12981890 -229682463 + L1MB3 LINE L1 5842 6131 -52 2220 83 10 0 chr1 12981890 12982178 -229682175 + AluSq SINE Alu 1 291 -22 2125 162 12 83 chr1 12982178 12982208 -229682145 + L1MB3 LINE L1 6131 6162 -21 566 131 0 20 chr1 12982476 12982575 -229681778 + HY1 scRNA scRNA 1 97 -15 2293 99 0 0 chr1 12982583 12982887 -229681466 - AluSg SINE Alu -6 304 1 1651 78 136 39 chr1 12982923 12983228 -229681125 + AluY SINE Alu 1 330 0 2060 133 0 0 chr1 12983241 12983543 -229680810 + AluSx SINE Alu 5 306 -6 278 261 23 23 chr1 12984611 12984699 -229679654 + MIR3 SINE MIR 86 173 -35 570 225 63 23 chr1 12984960 12985150 -229679203 + MIR SINE MIR 16 208 -54 2550 58 0 0 chr1 12985177 12985488 -229678865 - AluY SINE Alu 0 311 1 1121 183 85 64 chr1 12985505 12985626 -229678727 + AluJb SINE Alu 2 119 -183 2129 104 0 7 chr1 12985626 12985923 -229678430 + AluSx SINE Alu 12 306 -6 1121 183 85 64 chr1 12985923 12986096 -229678257 + AluJb SINE Alu 119 302 0 191 214 0 89 chr1 12986119 12986175 -229678178 + MIR SINE MIR 210 260 -2 485 250 78 0 chr1 12986338 12986454 -229677899 - MIR SINE MIR -113 149 25 2199 60 0 98 chr1 12987456 12987792 -229676561 - AluSg SINE Alu -7 303 1 1300 64 0 74 chr1 12987912 12988114 -229676239 + AluSg/x SINE Alu 117 303 -7 1020 160 112 15 chr1 12988117 12988323 -229676030 + AluJb SINE Alu 85 310 -2 382 224 138 0 chr1 12988323 12988439 -229675914 + L1M4 LINE L1 4768 4899 -1247 526 146 0 0 chr1 12988445 12988534 -229675819 + AluS SINE Alu 1 89 -223 344 219 99 53 chr1 12988601 12988752 -229675601 + L1M4 LINE L1 4889 5046 -1100 1128 59 0 0 chr1 12988756 12988891 -229675462 + AluSq/x SINE Alu 1 135 -177 2453 70 3 6 chr1 12988891 12989205 -229675148 + AluSp SINE Alu 1 313 0 2204 93 7 7 chr1 12989386 12989688 -229674665 + AluSx SINE Alu 1 302 -10 654 253 70 0 chr1 12989702 12989888 -229674465 + L1M4 LINE L1 5522 5720 -464 1190 221 167 38 chr1 12989910 12990207 -229674146 - LTR51 LTR ERV1 0 671 414 709 209 0 0 chr1 12990207 12990322 -229674031 + AluJo/FLAM SINE Alu 1 115 -187 2030 153 0 0 chr1 12990323 12990623 -229673730 - AluJb SINE Alu -12 300 1 1190 221 167 38 chr1 12990623 12990679 -229673674 - LTR51 LTR ERV1 -257 414 367 1759 157 35 7 chr1 12990679 12990966 -229673387 + AluJb SINE Alu 3 297 -15 1190 221 167 38 chr1 12990966 12991089 -229673264 - LTR51 LTR ERV1 -304 367 130 1974 105 22 0 chr1 12991127 12991423 -229672930 - AluSg SINE Alu 0 302 1 414 242 40 10 chr1 12991427 12991526 -229672827 + L2 LINE L2 3211 3312 -1 351 305 199 4 chr1 12992135 12992397 -229671956 - L2 LINE L2 -623 2691 2379 2143 102 3 0 chr1 12992507 12992801 -229671552 + AluSg1 SINE Alu 9 303 -6 520 240 114 17 chr1 12995160 12995362 -229668991 - MIR SINE MIR -28 234 13 193 315 67 11 chr1 12995362 12995451 -229668902 + MIR3 SINE MIR 88 181 -27 304 232 160 16 chr1 12995843 12995968 -229668385 - MIR3 SINE MIR -46 162 20 224 265 0 0 chr1 12996005 12996054 -229668299 + MIR SINE MIR 43 91 -117 189 300 53 86 chr1 12996102 12996219 -229668134 + MIR SINE MIR 6 117 -93 2259 107 0 0 chr1 12996430 12996729 -229667624 - AluSq SINE Alu -14 299 1 228 357 31 73 chr1 12997216 12997353 -229667000 + MIR3 SINE MIR 13 135 -127 9977 44 21 88 chr1 12997353 12998834 -229665519 + SVA Other Other 5 1385 -1 228 357 31 73 chr1 12998834 12998932 -229665421 + MIR3 SINE MIR 135 236 -26 1922 147 3 7 chr1 13001218 13001517 -229662836 + AluSx SINE Alu 1 298 -14 395 315 118 41 chr1 13002868 13002920 -229661433 + L1ME2 LINE L1 5371 5418 -746 2328 88 3 0 chr1 13002920 13003216 -229661137 - AluSp SINE Alu -14 299 3 395 315 118 41 chr1 13003216 13003699 -229660654 + L1ME2 LINE L1 5418 5947 -217 1801 170 20 0 chr1 13003895 13004189 -229660164 - AluJo SINE Alu -12 300 1 2033 94 35 7 chr1 13005288 13005574 -229658779 + AluSx SINE Alu 1 294 -18 197 297 141 0 chr1 13005876 13005940 -229658413 + MIR3 SINE MIR 130 202 -6 216 337 105 22 chr1 13005994 13006114 -229658239 - MIR SINE MIR -66 196 55 2309 79 10 0 chr1 13006114 13006406 -229657947 + AluSq SINE Alu 4 298 -15 216 337 105 22 chr1 13006406 13006466 -229657887 - MIR SINE MIR -207 55 1 2307 81 0 10 chr1 13006480 13006788 -229657565 - AluY SINE Alu -6 305 1 345 219 37 0 chr1 13006793 13006875 -229657478 - FLAM_A SINE Alu -6 127 43 1055 106 0 0 chr1 13006943 13007084 -229657269 + AluJb SINE Alu 1 141 -171 234 0 0 0 chr1 13008025 13008051 -229656302 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2094 100 0 7 chr1 13008053 13008334 -229656019 - AluSg SINE Alu -30 280 2 2346 86 0 0 chr1 13008419 13008723 -229655630 + AluSg SINE Alu 1 304 -6 2302 95 0 3 chr1 13009540 13009845 -229654508 - AluSx SINE Alu -8 304 1 2275 111 0 0 chr1 13010944 13011250 -229653103 - AluSx SINE Alu -6 306 1 1512 148 9 85 chr1 13011299 13011635 -229652718 - AluJo SINE Alu 0 312 5 2326 80 0 16 chr1 13011982 13012294 -229652059 - AluY SINE Alu -4 307 1 588 188 7 112 chr1 13012740 13012839 -229651514 + MER31-int LTR ERV1 1283 1391 -3545 2294 68 7 13 chr1 13012839 13013146 -229651207 - AluY SINE Alu -5 306 2 588 188 7 112 chr1 13013146 13013342 -229651011 + MER31-int LTR ERV1 1391 1686 -3250 1409 143 64 19 chr1 13013355 13013620 -229650733 + L1MB2 LINE L1 5894 6170 -1 795 162 156 6 chr1 13013621 13013788 -229650565 + AluJb SINE Alu 120 311 -1 709 313 52 4 chr1 13014208 13014441 -229649912 + MIR SINE MIR 9 252 -10 220 232 0 36 chr1 13014455 13014511 -229649842 - L2 LINE L2 -1 3312 3259 372 203 14 0 chr1 13014567 13014636 -229649717 - MIR SINE MIR -180 82 13 2774 10 0 0 chr1 13014648 13014958 -229649395 - AluYa5 SINE Alu -1 310 1 207 291 51 13 chr1 13015144 13015223 -229649130 + L2 LINE L2 2986 3067 -246 196 270 79 11 chr1 13016110 13016199 -229648154 + L2 LINE L2 3158 3252 -20 227 302 207 24 chr1 13016889 13017058 -229647295 + MIR SINE MIR 21 220 -42 2042 137 0 3 chr1 13017599 13017898 -229646455 + AluSx SINE Alu 1 298 -14 848 175 28 0 chr1 13017905 13018048 -229646305 + FRAM SINE Alu 5 151 -15 791 158 23 23 chr1 13018062 13018195 -229646158 + AluJo/FLAM SINE Alu 1 133 -169 2023 111 3 10 chr1 13018198 13018491 -229645862 + AluSg SINE Alu 1 292 -14 225 0 0 0 chr1 13018491 13018516 -229645837 + (CA)n Simple_repeat Simple_repeat 2 26 0 1655 166 6 52 chr1 13018624 13018949 -229645404 - AluJo SINE Alu -2 310 1 2175 113 0 0 chr1 13018953 13019253 -229645100 - AluSx SINE Alu -12 300 1 1961 124 9 22 chr1 13019258 13019573 -229644780 - AluSx SINE Alu -1 311 1 2047 115 40 0 chr1 13019724 13020020 -229644333 + AluSg SINE Alu 1 308 -2 2175 115 0 6 chr1 13020833 13021145 -229643208 + AluSx SINE Alu 1 310 -2 262 368 18 9 chr1 13021182 13021296 -229643057 + MIR SINE MIR 26 140 -122 3072 157 74 43 chr1 13021321 13022105 -229642248 - MER21A LTR ERV1 -10 921 3 401 289 44 0 chr1 13022687 13022822 -229641531 + L2 LINE L2 2920 3060 -212 269 279 32 82 chr1 13023191 13023230 -229641123 - MER103 DNA DNA -1 165 126 1988 88 3 54 chr1 13023230 13023562 -229640791 + AluY SINE Alu 1 317 0 269 279 32 82 chr1 13023562 13023679 -229640674 - MER103 DNA DNA -40 126 16 1805 73 28 0 chr1 13025131 13025378 -229638975 - AluSx SINE Alu -58 254 1 272 287 172 0 chr1 13025597 13025719 -229638634 - L2 LINE L2 -4 3268 3126 278 225 99 0 chr1 13026946 13027017 -229637336 + MER33 DNA MER1_type 10 87 -237 1741 94 112 0 chr1 13027072 13027339 -229637014 + AluSg SINE Alu 1 297 -13 1167 142 44 76 chr1 13027343 13027618 -229636735 - AluJo SINE Alu -25 287 22 671 147 80 0 chr1 13027641 13027791 -229636562 + MER33 DNA MER1_type 180 341 -22 2138 94 26 19 chr1 13028201 13028508 -229635845 - AluSx SINE Alu -3 309 1 1881 166 0 3 chr1 13028918 13029231 -229635122 - AluSx SINE Alu 0 312 1 1868 146 7 7 chr1 13029239 13029541 -229634812 - AluSx SINE Alu -10 302 1 2242 96 0 0 chr1 13029627 13029928 -229634425 + AluSx SINE Alu 2 302 -10 2059 114 13 7 chr1 13030122 13030421 -229633932 - AluSx SINE Alu -11 301 1 1081 114 40 28 chr1 13030448 13030624 -229633729 + AluSq SINE Alu 1 178 -135 2088 130 0 0 chr1 13030675 13030982 -229633371 + AluSx SINE Alu 1 307 -5 1957 100 50 0 chr1 13032118 13032399 -229631954 + AluSx SINE Alu 1 295 -17 353 262 220 6 chr1 13032410 13032578 -229631775 + MIR SINE MIR 13 216 -46 619 207 186 0 chr1 13032608 13032753 -229631600 - MER20 DNA MER1_type -47 172 1 1393 124 14 23 chr1 13032803 13033020 -229631333 + AluJb SINE Alu 85 299 -13 2016 144 0 0 chr1 13033084 13033383 -229630970 - AluSx SINE Alu -13 299 1 181 286 32 16 chr1 13033861 13033924 -229630429 + L2 LINE L2 3240 3303 -10 431 166 16 53 chr1 13033938 13034049 -229630304 + GA-rich Low_complexity Low_complexity 1 104 -76 2000 122 33 3 chr1 13034049 13034352 -229630001 + AluSq SINE Alu 1 312 -1 431 166 16 53 chr1 13034352 13034427 -229629926 + GA-rich Low_complexity Low_complexity 104 180 0 1420 97 0 0 chr1 13034933 13035119 -229629234 + AluSq SINE Alu 1 186 -127 380 250 8 58 chr1 13035297 13035611 -229628742 + C-rich Low_complexity Low_complexity 1 298 0 352 261 11 44 chr1 13035530 13035710 -229628643 + (CACCC)n Simple_repeat Simple_repeat 3 176 0 * 891 193 126 22 chr1 13035955 13036159 -229628194 + MLT1E1 LTR MaLR 6 187 -467 1763 161 0 27 chr1 13036159 13036322 -229628031 - AluJb SINE Alu -21 291 138 2179 94 3 31 chr1 13036322 13036641 -229627712 - AluSx SINE Alu -2 310 1 1763 161 0 27 chr1 13036641 13036776 -229627577 - AluJb SINE Alu -174 138 1 891 193 126 22 chr1 13036776 13037036 -229627317 + MLT1E1 LTR MaLR 187 648 -6 1808 90 143 4 chr1 13037312 13037578 -229626775 + AluSq SINE Alu 1 303 0 817 180 0 90 chr1 13037583 13037761 -229626592 + FRAM SINE Alu 5 166 0 2214 84 7 10 chr1 13037786 13038094 -229626259 + AluSx SINE Alu 2 308 -4 31 0 0 0 chr1 13038307 13038338 -229626015 + AT_rich Low_complexity Low_complexity 1 31 0 2027 138 0 0 chr1 13038347 13038645 -229625708 + AluSx SINE Alu 1 298 -14 1180 138 0 0 chr1 13038671 13038835 -229625518 + AluSg/x SINE Alu 119 285 -25 234 0 0 0 chr1 13038835 13038861 -229625492 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1180 138 0 0 chr1 13038861 13038877 -229625476 + AluSg/x SINE Alu 284 299 -11 274 117 0 117 chr1 13038886 13038946 -229625407 + FLAM SINE Alu 77 129 -4 242 123 18 0 chr1 13038946 13039003 -229625350 + (TA)n Simple_repeat Simple_repeat 1 58 0 180 116 18 107 chr1 13040066 13040178 -229624175 + C-rich Low_complexity Low_complexity 1 102 0 243 321 28 0 chr1 13040480 13040589 -229623764 + (TG)n Simple_repeat Simple_repeat 1 112 0 286 341 63 8 chr1 13040630 13040809 -229623544 - MIR SINE MIR -57 205 22 196 279 87 19 chr1 13041218 13041322 -229623031 + L2 LINE L2 3142 3252 -20 190 327 0 0 chr1 13042136 13042191 -229622162 - L3b LINE CR1 -195 1388 1334 950 144 0 6 chr1 13042711 13042892 -229621461 + (GGA)n Simple_repeat Simple_repeat 1 180 0 323 217 14 0 chr1 13043344 13043413 -229620940 + L1ME LINE L1 5537 5606 -515 343 216 27 14 chr1 13043438 13043512 -229620841 + MER58 DNA MER1_type 1 75 -140 691 198 116 17 chr1 13043516 13043530 -229620823 - AluJb SINE Alu -1 311 300 2344 96 0 0 chr1 13043530 13043842 -229620511 - AluSx SINE Alu 0 312 1 691 198 116 17 chr1 13043842 13043999 -229620354 - AluJb SINE Alu -12 300 123 2442 77 0 0 chr1 13044025 13044336 -229620017 + AluY SINE Alu 1 311 0 303 228 62 53 chr1 13044336 13044373 -229619980 + MER58 DNA MER1_type 109 144 -2276 1818 138 0 66 chr1 13044373 13044514 -229619839 + AluJo SINE Alu 3 152 -160 1942 121 0 0 chr1 13044514 13044816 -229619537 + AluSx SINE Alu 3 304 0 1818 138 0 66 chr1 13044816 13044993 -229619360 + AluJo SINE Alu 152 301 -11 303 228 62 53 chr1 13044993 13045149 -229619204 + MER58 DNA MER1_type 144 2420 0 1719 177 3 3 chr1 13045189 13045499 -229618854 - AluJo SINE Alu -2 310 1 22 0 0 0 chr1 13045499 13045521 -229618832 + AT_rich Low_complexity Low_complexity 1 22 0 243 197 42 28 chr1 13045666 13045737 -229618616 - MIR SINE MIR -111 151 80 219 214 18 0 chr1 13046080 13046136 -229618217 + L2 LINE L2 2917 2973 -299 208 309 62 12 chr1 13046222 13046303 -229618050 - MER5B DNA MER1_type -65 113 29 1602 93 0 13 chr1 13046331 13046556 -229617797 + AluSg1 SINE Alu 1 222 -87 828 122 0 0 chr1 13046556 13046679 -229617674 + AluSg/x SINE Alu 183 305 -4 2203 101 3 0 chr1 13046685 13046991 -229617362 + AluY SINE Alu 1 307 -4 1291 109 0 0 chr1 13046991 13047165 -229617188 + AluSg/x SINE Alu 134 307 -5 820 247 22 54 chr1 13047254 13047355 -229616998 - MIR SINE MIR -17 245 142 2270 96 0 0 chr1 13047355 13047678 -229616675 - AluSq SINE Alu 0 313 1 820 247 22 54 chr1 13047678 13047799 -229616554 - MIR SINE MIR -120 142 30 348 271 10 31 chr1 13048969 13049065 -229615288 - MER5A DNA MER1_type -39 150 57 597 260 103 0 chr1 13049724 13049928 -229614425 + MIR SINE MIR 21 245 -17 2069 106 0 10 chr1 13050184 13050477 -229613876 - AluSx SINE Alu 0 312 23 850 120 0 23 chr1 13050539 13050672 -229613681 + AluJo/FLAM SINE Alu 1 130 -182 2331 94 0 7 chr1 13050675 13050984 -229613369 + AluSx SINE Alu 1 307 -5 287 263 30 40 chr1 13051141 13051240 -229613113 - MIR3 SINE MIR -48 160 63 1863 123 0 52 chr1 13052103 13052413 -229611940 - AluSq SINE Alu -19 294 1 752 225 55 60 chr1 13052424 13052435 -229611918 - MIR SINE MIR -44 218 208 1825 159 7 3 chr1 13052435 13052731 -229611622 + AluJb SINE Alu 1 297 -15 752 225 55 60 chr1 13052731 13052798 -229611555 - MIR SINE MIR -54 208 142 2193 99 3 0 chr1 13052798 13053090 -229611263 - AluSq SINE Alu -20 293 1 752 225 55 60 chr1 13053090 13053228 -229611125 - MIR SINE MIR -120 142 2 2022 129 0 0 chr1 13053245 13053540 -229610813 + AluSx SINE Alu 1 295 -17 957 210 52 4 chr1 13053540 13053769 -229610584 + MLT1A1 LTR MaLR 126 365 0 192 230 46 58 chr1 13054320 13054407 -229609946 - MIR SINE MIR -61 147 62 2371 65 0 0 chr1 13054659 13054953 -229609400 - AluY SINE Alu -7 304 11 213 19 111 0 chr1 13054954 13055008 -229609345 + (TA)n Simple_repeat Simple_repeat 2 61 0 46 19 0 0 chr1 13055013 13055066 -229609287 + AT_rich Low_complexity Low_complexity 1 53 0 1868 104 0 0 chr1 13055066 13055317 -229609036 - AluSx SINE Alu -61 251 1 537 302 101 39 chr1 13055331 13055507 -229608846 - L2 LINE L2 -610 2704 2540 1936 139 0 10 chr1 13055507 13055801 -229608552 + AluSx SINE Alu 1 291 -21 537 302 101 39 chr1 13055801 13056011 -229608342 - L2 LINE L2 -774 2540 2294 2040 138 0 0 chr1 13056881 13057185 -229607168 + AluSx SINE Alu 1 304 -8 612 287 108 74 chr1 13057270 13057650 -229606703 + MLT1K LTR MaLR 145 537 -51 339 296 20 10 chr1 13057650 13057748 -229606605 + L2 LINE L2 3150 3248 -24 2042 113 23 7 chr1 13057842 13058142 -229606211 - AluSx SINE Alu -1 311 7 224 281 31 0 chr1 13058772 13058836 -229605517 - MIR3 SINE MIR -135 73 8 2199 127 76 95 chr1 13058840 13059018 -229605335 + MSTB LTR MaLR 2 182 -244 2014 131 14 0 chr1 13059018 13059309 -229605044 - AluSx SINE Alu -17 295 1 2199 127 76 95 chr1 13059309 13059334 -229605019 + MSTB LTR MaLR 182 206 -220 1718 129 111 7 chr1 13059334 13059613 -229604740 - AluSg1 SINE Alu 0 309 2 2199 127 76 95 chr1 13059613 13059841 -229604512 + MSTB LTR MaLR 206 426 0 315 318 37 32 chr1 13059998 13060187 -229604166 - MER117 DNA MER1_type 0 197 8 888 270 14 0 chr1 13060364 13060579 -229603774 + MIR SINE MIR 20 237 -25 2277 115 0 0 chr1 13060592 13060904 -229603449 + AluSx SINE Alu 1 312 0 1612 162 22 50 chr1 13061142 13061463 -229602890 - AluJb SINE Alu 0 312 1 303 49 0 0 chr1 13062137 13062178 -229602175 + (TG)n Simple_repeat Simple_repeat 2 42 0 403 274 256 42 chr1 13062310 13062356 -229601997 - MIR SINE MIR 0 262 227 2129 105 3 3 chr1 13062356 13062650 -229601703 - AluSx SINE Alu -18 294 1 403 274 256 42 chr1 13062650 13062818 -229601535 - MIR SINE MIR -35 227 2 2230 119 0 0 chr1 13063004 13063314 -229601039 + AluSq SINE Alu 1 310 -3 2126 120 0 13 chr1 13063313 13063621 -229600732 + AluSg1 SINE Alu 1 304 -5 * 344 224 199 25 chr1 13063706 13063867 -229600486 - MER5A DNA MER1_type 0 189 1 2043 121 3 33 chr1 13064308 13064615 -229599738 + AluSq SINE Alu 1 298 -15 1732 102 3 129 chr1 13064615 13064819 -229599534 + AluSx SINE Alu 1 150 -162 2071 108 3 14 chr1 13064819 13065133 -229599220 + AluSq SINE Alu 3 313 0 1732 102 3 129 chr1 13065133 13065261 -229599092 + AluSx SINE Alu 150 292 -20 431 137 0 0 chr1 13065295 13065368 -229598985 + Alu SINE Alu 237 309 -2 531 255 12 69 chr1 13065416 13065617 -229598736 - MIR SINE MIR -34 228 36 694 180 7 43 chr1 13066014 13066153 -229598200 + MIR SINE MIR 92 225 -37 1463 178 0 0 chr1 13066282 13066524 -229597829 + AluJo SINE Alu 5 246 -66 805 169 15 7 chr1 13066537 13066673 -229597680 + AluJo SINE Alu 1 137 -175 2155 109 17 0 chr1 13066699 13066993 -229597360 + AluSq SINE Alu 7 305 -8 243 359 16 31 chr1 13068217 13068345 -229596008 + MIR SINE MIR 46 171 -91 2259 110 7 0 chr1 13068350 13068658 -229595695 + AluSx SINE Alu 1 310 -2 224 420 35 0 chr1 13069230 13069373 -229594980 - MIR SINE MIR -14 248 101 2318 109 0 0 chr1 13069453 13069766 -229594587 + AluSq SINE Alu 1 313 0 2004 128 0 0 chr1 13069778 13070092 -229594261 + AluSx SINE Alu 1 314 0 366 232 125 9 chr1 13070350 13070462 -229593891 + MIR SINE MIR 16 140 -68 1473 136 0 0 chr1 13070472 13070678 -229593675 + AluSx SINE Alu 1 206 -106 2249 101 0 0 chr1 13070678 13070975 -229593378 + AluSg SINE Alu 1 297 -13 667 159 8 32 chr1 13070975 13071116 -229593237 + AluSg/x SINE Alu 190 309 0 488 239 147 73 chr1 13071271 13071489 -229592864 + MIR SINE MIR 29 262 0 302 283 151 0 chr1 13071515 13071667 -229592686 - MIR3 SINE MIR -21 187 13 314 311 98 0 chr1 13072199 13072331 -229592022 + MIR SINE MIR 117 261 -1 1118 153 0 0 chr1 13072540 13072717 -229591636 - AluJb SINE Alu -2 310 134 2211 92 7 0 chr1 13072717 13073012 -229591341 - AluSp SINE Alu -12 301 5 2341 88 3 0 chr1 13073197 13073502 -229590851 + AluSg SINE Alu 1 306 -4 2005 154 0 0 chr1 13073708 13074020 -229590333 + AluJb SINE Alu 1 312 0 2242 101 0 0 chr1 13074127 13074424 -229589929 - AluSg1 SINE Alu -12 297 1 226 239 0 43 chr1 13074429 13074521 -229589832 + HAL1b LINE L1 1179 1266 -82 27 62 0 0 chr1 13074569 13074617 -229589736 + AT_rich Low_complexity Low_complexity 1 48 0 2025 125 3 0 chr1 13074642 13074931 -229589422 + AluSp SINE Alu 1 290 -23 774 163 0 44 chr1 13074990 13075125 -229589228 + AluJo SINE Alu 6 134 -178 272 336 18 18 chr1 13075194 13075307 -229589046 - MIR SINE MIR -63 145 33 377 328 90 50 chr1 13075451 13075478 -229588875 - MIR SINE MIR -6 256 232 1762 152 10 30 chr1 13075478 13075780 -229588573 - AluJb SINE Alu -16 296 1 377 328 90 50 chr1 13075780 13075953 -229588400 - MIR SINE MIR -30 232 48 1690 161 19 63 chr1 13076034 13076351 -229588002 + AluJb SINE Alu 1 303 -9 23 54 0 0 chr1 13076838 13076875 -229587478 + AT_rich Low_complexity Low_complexity 1 37 0 431 97 0 0 chr1 13076879 13076941 -229587412 - Alu SINE Alu -8 302 241 2335 75 3 3 chr1 13076948 13077243 -229587110 + AluSp SINE Alu 1 295 -18 572 92 0 0 chr1 13077244 13077331 -229587022 + L1PA16 LINE L1 6079 6165 -1 1676 167 0 42 chr1 13077344 13077654 -229586699 + AluJb SINE Alu 7 304 0 2061 107 11 0 chr1 13077655 13077956 -229586397 + AluSq SINE Alu 1 304 0 1949 142 23 0 chr1 13077958 13078260 -229586093 + AluSx SINE Alu 4 312 0 2133 91 0 70 chr1 13078743 13078935 -229585418 - AluSx SINE Alu -6 306 145 2503 64 0 0 chr1 13078935 13079246 -229585107 - AluY SINE Alu 0 311 1 2133 91 0 70 chr1 13079246 13079382 -229584971 - AluSx SINE Alu -167 145 1 189 203 14 29 chr1 13079390 13079459 -229584894 + CT-rich Low_complexity Low_complexity 2 69 0 2371 65 0 26 chr1 13079508 13079818 -229584535 - AluSg SINE Alu -7 303 2 209 300 17 0 chr1 13080212 13080332 -229584021 + (CGG)n Simple_repeat Simple_repeat 3 124 0 27 0 0 0 chr1 13080475 13080502 -229583851 + GC_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr1 13080849 13080879 -229583474 + GC_rich Low_complexity Low_complexity 1 30 0 311 354 140 6 chr1 13081468 13081646 -229582707 + MIR SINE MIR 6 207 -55 351 218 102 82 chr1 13082028 13082175 -229582178 - L2 LINE L2 -5 3308 3159 1027 88 15 0 chr1 13082211 13082348 -229582005 + AluSx SINE Alu 1 139 -174 579 57 0 0 chr1 13082348 13082418 -229581935 - Alu SINE Alu -240 71 2 940 173 6 0 chr1 13082560 13082722 -229581631 + AluSx SINE Alu 134 296 -16 1160 158 0 0 chr1 13084246 13084423 -229579930 + FRAM SINE Alu 1 176 0 198 0 0 0 chr1 13084426 13084448 -229579905 + (A)n Simple_repeat Simple_repeat 1 22 0 1204 379 0 45 chr1 13084453 13084764 -229579589 + AluJo SINE Alu 1 297 -15 3050 151 125 9 chr1 13084865 13085442 -229578911 - LTR48B LTR ERV1 0 644 1 486 33 0 0 chr1 13085444 13085504 -229578849 + (CA)n Simple_repeat Simple_repeat 2 61 0 2386 184 50 10 chr1 13085531 13086031 -229578322 + MER21B LTR ERV1 89 608 -255 815 161 0 0 chr1 13086036 13086166 -229578187 - FRAM SINE Alu -19 157 28 994 161 30 94 chr1 13086337 13086479 -229577874 + L1MB8 LINE L1 5928 6047 -131 2323 81 3 0 chr1 13086479 13086776 -229577577 + AluSp SINE Alu 1 298 -15 994 161 30 94 chr1 13086776 13086900 -229577453 + L1MB8 LINE L1 6047 6177 -1 1615 163 17 7 chr1 13086942 13087231 -229577122 - AluJo SINE Alu -20 292 1 799 163 7 35 chr1 13087231 13087372 -229576981 - AluJo SINE Alu -170 142 6 2038 142 0 16 chr1 13088403 13088714 -229575639 + AluSx SINE Alu 1 306 -6 2122 117 9 19 chr1 13089002 13089318 -229575035 + AluSq SINE Alu 1 313 0 754 223 94 30 chr1 13089370 13089765 -229574588 + L1MC5 LINE L1 7369 7788 -173 662 201 15 0 chr1 13089767 13089890 -229574463 + AluJo SINE Alu 1 128 -184 513 32 0 0 chr1 13089890 13089953 -229574400 + (CA)n Simple_repeat Simple_repeat 2 64 0 420 342 26 26 chr1 13089963 13090118 -229574235 + L1MC5 LINE L1 7775 7929 -32 419 360 82 17 chr1 13090201 13090434 -229573919 + L1ME4a LINE L1 5815 6062 -59 213 353 86 9 chr1 13092892 13093008 -229571345 - L2 LINE L2 -50 3222 3098 2241 95 0 0 chr1 13093684 13093980 -229570373 - AluSq SINE Alu 0 313 18 744 117 0 0 chr1 13093980 13094083 -229570270 - FLAM_A SINE Alu -11 131 29 185 276 0 35 chr1 13096109 13096167 -229568186 - L2 LINE L2 -17 3255 3200 2229 109 7 0 chr1 13096215 13096518 -229567835 - AluSx SINE Alu -6 306 2 551 246 15 8 chr1 13096531 13096665 -229567688 - MIR SINE MIR -94 168 34 2203 107 0 0 chr1 13098233 13098532 -229565821 + AluSx SINE Alu 3 301 -11 2270 93 0 10 chr1 13099121 13099434 -229564919 + AluSg SINE Alu 1 310 0 652 157 165 0 chr1 13099767 13099882 -229564471 + AluJo SINE Alu 2 135 -177 375 365 138 24 chr1 13100325 13100550 -229563803 - L3 LINE CR1 -7 1570 1372 1699 156 3 62 chr1 13100550 13100870 -229563483 + AluJo SINE Alu 1 301 -11 375 365 138 24 chr1 13100870 13100937 -229563416 - L3 LINE CR1 -205 1372 1314 2246 107 10 0 chr1 13100937 13101246 -229563107 - AluSq SINE Alu -1 312 1 375 365 138 24 chr1 13101246 13101459 -229562894 - L3 LINE CR1 -263 1314 1006 380 313 22 44 chr1 13102239 13102421 -229561932 - MER5B DNA MER1_type 0 178 1 633 186 119 0 chr1 13102529 13102647 -229561706 + FLAM_A SINE Alu 1 132 -1 1936 128 0 0 chr1 13104432 13104713 -229559640 + AluJb SINE Alu 31 311 -1 2319 101 0 0 chr1 13104717 13105024 -229559329 + AluSg SINE Alu 1 307 -3 311 313 163 14 chr1 13105037 13105184 -229559169 + MIR SINE MIR 94 262 0 274 346 67 0 chr1 13105250 13105354 -229558999 + MIR SINE MIR 25 135 -127 537 272 106 56 chr1 13105927 13106247 -229558106 - L2 LINE L2 -5 3267 2932 236 339 81 44 chr1 13106273 13106571 -229557782 - L2 LINE L2 -456 2858 2550 234 156 0 0 chr1 13107220 13107265 -229557088 + (TG)n Simple_repeat Simple_repeat 2 46 0 286 264 28 14 chr1 13109634 13109706 -229554647 - MER5A DNA MER1_type -32 157 85 1830 149 13 23 chr1 13111422 13111731 -229552622 + AluJo SINE Alu 4 309 -3 383 271 84 19 chr1 13112012 13112119 -229552234 + L1ME4a LINE L1 6008 6121 0 2146 110 7 13 chr1 13112126 13112436 -229551917 + AluSx SINE Alu 1 308 -4 2138 121 10 0 chr1 13114004 13114302 -229550051 + AluSq SINE Alu 1 301 -12 2426 71 3 0 chr1 13114602 13114910 -229549443 + AluSp SINE Alu 1 309 -4 2164 110 10 3 chr1 13115202 13115510 -229548843 - AluSx SINE Alu -2 310 1 390 261 62 71 chr1 13116154 13116217 -229548136 + Charlie8 DNA MER1_type 70 132 -209 2347 82 0 0 chr1 13116217 13116520 -229547833 - AluY SINE Alu -8 303 1 390 261 62 71 chr1 13116520 13116667 -229547686 + Charlie8 DNA MER1_type 132 278 -63 388 283 43 7 chr1 13116699 13116837 -229547516 + MLT1E LTR MaLR 20 162 -431 2226 90 20 0 chr1 13116851 13117151 -229547202 + AluSx SINE Alu 1 306 -6 549 252 52 7 chr1 13117516 13117674 -229546679 - MIR SINE MIR -62 146 9 807 205 41 0 chr1 13117903 13118074 -229546279 - MLT1F1 LTR MaLR 0 567 390 226 339 71 9 chr1 13118490 13118602 -229545751 - MIR SINE MIR -139 123 5 * 690 284 127 4 chr1 13118599 13118828 -229545525 - MIR SINE MIR -1 261 5 238 315 0 0 chr1 13119249 13119338 -229545015 + C-rich Low_complexity Low_complexity 3 91 0 457 247 31 86 chr1 13119654 13119816 -229544537 - MER5B DNA MER1_type -17 161 9 1273 110 0 0 chr1 13119832 13120005 -229544348 - AluSg/x SINE Alu -6 306 134 198 231 141 13 chr1 13120163 13120241 -229544112 - MIR SINE MIR -63 145 58 528 210 30 0 chr1 13170482 13170582 -229493771 + AluSg/x SINE Alu 193 295 -15 469 252 102 7 chr1 13170598 13170745 -229493608 + MIR SINE MIR 70 230 -32 340 240 13 0 chr1 13171656 13171731 -229492622 - MIR3 SINE MIR -21 187 112 1681 148 0 74 chr1 13172235 13172406 -229491947 - AluJo SINE Alu -12 300 163 2053 102 51 0 chr1 13172406 13172699 -229491654 - AluSg1 SINE Alu -1 308 1 1681 148 0 74 chr1 13172699 13172851 -229491502 - AluJo SINE Alu -149 163 1 291 248 205 0 chr1 13173110 13173227 -229491126 + MIR SINE MIR 2 142 -120 2305 86 7 0 chr1 13173246 13173538 -229490815 - AluSp SINE Alu -17 296 3 2032 114 0 13 chr1 13173542 13173841 -229490512 - AluSq SINE Alu -18 295 1 1006 59 7 30 chr1 13175317 13175452 -229488901 - AluSq/x SINE Alu -180 132 1 2197 79 3 30 chr1 13175522 13175825 -229488528 - AluY SINE Alu -16 295 1 273 308 7 35 chr1 13175825 13175948 -229488405 - L1MC4 LINE L1 -9 8033 7908 1885 157 0 10 chr1 13175948 13176248 -229488105 - AluJb SINE Alu -15 297 1 2290 100 0 0 chr1 13176252 13176553 -229487800 - AluSg SINE Alu -9 301 1 273 308 7 35 chr1 13176553 13176567 -229487786 - L1MC4 LINE L1 -137 7905 7895 220 278 222 0 chr1 13176845 13176971 -229487382 + MIR3 SINE MIR 34 187 -21 212 135 0 0 chr1 13177509 13177546 -229486807 - L2 LINE L2 -217 3055 3019 642 358 10 0 chr1 13177669 13177870 -229486483 - MIR SINE MIR -12 250 48 1824 122 4 0 chr1 13177873 13178128 -229486225 - AluSx SINE Alu -56 256 1 186 316 42 21 chr1 13178130 13178225 -229486128 - MIR3 SINE MIR -111 97 1 522 262 110 31 chr1 13178903 13179094 -229485259 - MIR SINE MIR -45 217 12 225 224 0 0 chr1 13179160 13179209 -229485144 + L3b LINE CR1 1338 1386 -197 2200 70 42 0 chr1 13179239 13179526 -229484827 - AluY SINE Alu -12 299 1 1035 166 46 37 chr1 13180284 13180501 -229483852 + MER20 DNA MER1_type 1 219 0 483 292 106 6 chr1 13180681 13180842 -229483511 - MIR SINE MIR -18 244 68 398 292 94 64 chr1 13182836 13183361 -229480992 + L2 LINE L2 2712 3245 -27 2127 107 20 0 chr1 13183415 13183713 -229480640 + AluSx SINE Alu 1 304 -8 229 243 12 18 chr1 13183752 13183921 -229480432 + (TG)n Simple_repeat Simple_repeat 1 168 0 429 221 10 10 chr1 13183975 13184271 -229480082 + (TG)n Simple_repeat Simple_repeat 1 296 0 218 261 9 0 chr1 13184290 13184401 -229479952 + (TG)n Simple_repeat Simple_repeat 1 112 0 257 305 25 70 chr1 13185017 13185185 -229479168 - MIR SINE MIR -67 141 32 28 0 0 0 chr1 13185875 13185903 -229478450 + AT_rich Low_complexity Low_complexity 1 28 0 2086 114 24 0 chr1 13186202 13186499 -229477854 - AluSg SINE Alu -4 306 3 239 0 0 31 chr1 13186499 13186531 -229477822 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2117 100 4 0 chr1 13186531 13186812 -229477541 - AluSx SINE Alu -30 282 1 688 152 0 56 chr1 13186855 13186980 -229477373 + FLAM_A SINE Alu 25 142 0 1567 172 10 17 chr1 13187588 13187885 -229476468 - AluJb SINE Alu -16 296 2 193 333 0 0 chr1 13188970 13189030 -229475323 - L2 LINE L2 -81 3191 3132 331 191 16 0 chr1 13189302 13189365 -229474988 + MIR SINE MIR 79 142 -120 1191 143 0 0 chr1 13189395 13189570 -229474783 - AluSg/x SINE Alu -3 309 135 1858 113 0 32 chr1 13189570 13189853 -229474500 - AluSc SINE Alu -3 306 33 2294 83 7 0 chr1 13189853 13190152 -229474201 - AluSq SINE Alu -10 303 1 1897 123 0 73 chr1 13190845 13191161 -229473192 - AluSx SINE Alu -19 293 1 297 274 35 31 chr1 13191208 13191329 -229473024 - MIR3 SINE MIR -102 106 9 231 312 14 0 chr1 13191880 13191962 -229472391 - MIR SINE MIR -88 120 37 212 240 0 20 chr1 13192209 13192259 -229472094 - L2 LINE L2 -3 3310 3262 195 42 0 0 chr1 13193490 13193514 -229470839 + (TCCCC)n Simple_repeat Simple_repeat 3 26 0 364 280 20 10 chr1 13193553 13193653 -229470700 - MIR SINE MIR -77 185 85 236 247 0 26 chr1 13194673 13194829 -229469524 + G-rich Low_complexity Low_complexity 1 151 0 27 49 0 0 chr1 13194855 13194896 -229469457 + GC_rich Low_complexity Low_complexity 1 41 0 276 53 0 0 chr1 13195496 13195534 -229468819 + (CA)n Simple_repeat Simple_repeat 2 39 0 1431 244 135 24 chr1 13196166 13196608 -229467745 - L2 LINE L2 -2 3311 2919 3899 100 14 45 chr1 13196608 13196848 -229467505 - MER41A LTR ERV1 0 554 308 2138 102 14 0 chr1 13196848 13197142 -229467211 - AluSx SINE Alu -14 298 1 1952 142 13 3 chr1 13197142 13197444 -229466909 - AluSx SINE Alu -7 305 1 3899 100 14 45 chr1 13197444 13197774 -229466579 - MER41A LTR ERV1 -244 310 1 1431 244 135 24 chr1 13197774 13197879 -229466474 - L2 LINE L2 -394 2919 2827 2165 106 0 3 chr1 13197879 13198180 -229466173 - AluSx SINE Alu -12 300 1 1431 244 135 24 chr1 13198180 13198303 -229466050 - L2 LINE L2 -486 2827 2567 234 65 0 0 chr1 13198521 13198552 -229465801 + MIR SINE MIR 116 146 -62 1329 199 66 68 chr1 13198573 13198782 -229465571 + L1MB7 LINE L1 5740 5948 -236 1954 142 3 22 chr1 13198782 13198920 -229465433 + AluJo SINE Alu 1 140 -172 2046 141 0 0 chr1 13198920 13199225 -229465128 + AluSx SINE Alu 3 307 -5 1954 142 3 22 chr1 13199225 13199402 -229464951 + AluJo SINE Alu 140 310 -2 1329 199 66 68 chr1 13199402 13199633 -229464720 + L1MB7 LINE L1 5948 6179 -5 1343 164 134 11 chr1 13199755 13200017 -229464336 + AluSx SINE Alu 1 294 -8 423 203 112 87 chr1 13200440 13200484 -229463869 - MIR SINE MIR -4 258 217 1870 164 17 0 chr1 13200484 13200782 -229463571 - AluJb SINE Alu -8 304 2 423 203 112 87 chr1 13200782 13200959 -229463394 - MIR SINE MIR -45 217 47 227 260 115 39 chr1 13201186 13201227 -229463126 - L2 LINE L2 0 3272 3236 1939 151 0 22 chr1 13201227 13201546 -229462807 + AluJo SINE Alu 1 312 0 227 260 115 39 chr1 13201546 13201608 -229462745 - L2 LINE L2 -36 3236 3161 193 284 189 0 chr1 13202289 13202363 -229461990 - MIR3 SINE MIR -4 204 117 2270 76 3 17 chr1 13202470 13202772 -229461581 - AluSp SINE Alu -15 298 1 1318 88 0 84 chr1 13202793 13203031 -229461322 - L1PB2 LINE L1 -33 6118 5901 268 308 118 47 chr1 13203735 13203904 -229460449 - MER5A DNA MER1_type -2 187 7 213 319 223 0 chr1 13204129 13204223 -229460130 + MIR3 SINE MIR 48 162 -46 370 247 195 13 chr1 13204273 13204427 -229459926 + MIR SINE MIR 81 262 0 547 313 35 15 chr1 13204532 13204733 -229459620 + MIR SINE MIR 58 262 0 21 0 0 0 chr1 13204837 13204858 -229459495 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 13205368 13205390 -229458963 + GC_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr1 13205913 13205949 -229458404 + GC_rich Low_complexity Low_complexity 1 36 0 2546 58 0 0 chr1 13206162 13206472 -229457881 + AluSq SINE Alu 1 310 -3 2162 99 0 7 chr1 13206631 13206924 -229457429 + AluSg SINE Alu 1 291 -19 199 236 55 0 chr1 13207081 13207136 -229457217 + L2 LINE L2 3198 3255 -17 1155 177 57 11 chr1 13207180 13207255 -229457098 + Tigger5 DNA MER2_type 2046 2116 -207 2141 83 0 0 chr1 13207255 13207562 -229456791 - AluSx SINE Alu 0 312 15 1155 177 57 11 chr1 13207562 13207751 -229456602 + Tigger5 DNA MER2_type 2116 2322 -1 302 274 60 0 chr1 13207778 13207862 -229456491 - MIR3 SINE MIR -47 161 73 2105 120 13 0 chr1 13208026 13208325 -229456028 - AluSx SINE Alu -9 303 1 2252 91 3 0 chr1 13208384 13208680 -229455673 - AluSg SINE Alu -13 297 1 266 244 73 24 chr1 13209773 13209855 -229454498 - MIR SINE MIR -88 120 35 217 281 67 0 chr1 13209930 13210018 -229454335 + MIR SINE MIR 36 129 -79 356 290 59 53 chr1 13210018 13210187 -229454166 - MER5B DNA MER1_type -3 175 6 2399 77 0 0 chr1 13212124 13212435 -229451918 - AluY SINE Alu 0 311 1 227 279 0 0 chr1 13213701 13213762 -229450591 + L2 LINE L2 3249 3309 -4 2174 104 0 10 chr1 13213868 13214166 -229450187 + AluSx SINE Alu 1 295 -17 190 271 0 57 chr1 13214194 13214264 -229450089 + MIR SINE MIR 117 182 -80 817 99 0 0 chr1 13215701 13215812 -229448541 + FLAM_C SINE Alu 1 111 -32 29 28 0 0 chr1 13215819 13215855 -229448498 + AT_rich Low_complexity Low_complexity 1 36 0 2382 64 0 3 chr1 13216229 13216526 -229447827 - AluY SINE Alu -14 297 2 1328 94 6 0 chr1 13216526 13216696 -229447657 + AluSq SINE Alu 6 176 -137 222 37 0 0 chr1 13216696 13216723 -229447630 + (TG)n Simple_repeat Simple_repeat 2 28 0 377 274 0 26 chr1 13216725 13216848 -229447505 + L1MC4 LINE L1 1996 6983 -1339 334 275 163 58 chr1 13216879 13216974 -229447379 - L2 LINE L2 -59 3254 3170 1981 116 10 10 chr1 13216974 13217268 -229447085 - AluSp SINE Alu -14 299 6 334 275 163 58 chr1 13217268 13217485 -229446868 - L2 LINE L2 -143 3170 2909 1022 153 6 0 chr1 13217892 13218055 -229446298 + FRAM SINE Alu 1 160 -16 2372 83 0 0 chr1 13218346 13218646 -229445707 - AluY SINE Alu -11 300 1 202 146 49 0 chr1 13218878 13218919 -229445434 + MIR SINE MIR 41 83 -179 2128 94 10 39 chr1 13219283 13219591 -229444762 - AluSq SINE Alu -14 299 1 2236 104 0 7 chr1 13219775 13220084 -229444269 + AluSg SINE Alu 1 307 -3 802 215 12 17 chr1 13220091 13220263 -229444090 + AluJo SINE Alu 86 256 -56 500 138 23 0 chr1 13220341 13220428 -229443925 + AluJ/FRAM SINE Alu 224 312 0 1249 132 5 20 chr1 13220551 13220598 -229443755 + AluJb SINE Alu 87 133 -179 2309 89 0 0 chr1 13220598 13220902 -229443451 + AluSg SINE Alu 1 304 -6 2154 67 20 91 chr1 13220902 13221244 -229443109 + AluYb8 SINE Alu 1 318 0 1249 132 5 20 chr1 13221244 13221392 -229442961 + AluJb SINE Alu 131 280 -32 198 0 0 0 chr1 13221392 13221414 -229442939 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 200 197 0 66 chr1 13222126 13222187 -229442166 + C-rich Low_complexity Low_complexity 5 61 0 1882 114 21 7 chr1 13222509 13222790 -229441563 + AluSx SINE Alu 11 295 -17 229 204 19 0 chr1 13222868 13222922 -229441431 + MER91A DNA MER1_type 4 58 -138 1669 115 70 80 chr1 13223086 13223200 -229441153 - THE1C LTR MaLR -5 370 256 2432 80 0 6 chr1 13223200 13223512 -229440841 + AluY SINE Alu 2 311 0 1669 115 70 80 chr1 13223512 13223771 -229440582 - THE1C LTR MaLR -119 256 1 202 222 0 0 chr1 13223772 13223808 -229440545 - MIR SINE MIR -22 240 205 1468 182 33 23 chr1 13225374 13225676 -229438677 + AluJo SINE Alu 1 305 -7 345 342 0 17 chr1 13225796 13225913 -229438440 + MIR SINE MIR 79 193 -69 726 219 9 43 chr1 13225940 13225998 -229438355 - MER3 DNA MER1_type -6 203 145 2225 89 10 0 chr1 13225998 13226302 -229438051 + AluSx SINE Alu 2 308 -4 726 219 9 43 chr1 13226302 13226453 -229437900 - MER3 DNA MER1_type -64 145 1 * 960 180 58 24 chr1 13226452 13226658 -229437695 + MER58A DNA MER1_type 3 215 -9 1505 128 88 36 chr1 13226661 13226935 -229437418 + AluJo SINE Alu 1 288 -24 207 0 0 0 chr1 13226951 13226974 -229437379 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2225 83 33 0 chr1 13227049 13227351 -229437002 - AluSp SINE Alu -1 312 1 341 306 134 13 chr1 13227378 13227535 -229436818 - MIR SINE MIR -54 208 33 486 259 37 7 chr1 13228437 13228572 -229435781 + MIR3 SINE MIR 20 158 -50 250 242 77 22 chr1 13228602 13228693 -229435660 - MER58C DNA MER1_type -39 176 81 2100 124 3 3 chr1 13228693 13228999 -229435354 - AluSx SINE Alu -6 306 1 565 222 16 8 chr1 13229017 13229143 -229435210 + MIR SINE MIR 20 146 -62 395 239 65 7 chr1 13229151 13229289 -229435064 - MER58C DNA MER1_type -1 214 69 183 282 73 73 chr1 13229552 13229676 -229434677 + MIR SINE MIR 30 153 -109 2341 74 0 3 chr1 13229694 13229992 -229434361 + AluSx SINE Alu 1 297 -15 1033 123 116 0 chr1 13229992 13230147 -229434206 + AluSg/x SINE Alu 132 304 -6 491 228 88 15 chr1 13230167 13230303 -229434050 + MIR SINE MIR 107 252 -10 196 267 99 30 chr1 13230852 13230953 -229433400 - MIR3 SINE MIR -95 113 6 198 71 0 0 chr1 13231180 13231208 -229433145 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr1 13231324 13231346 -229433007 + GC_rich Low_complexity Low_complexity 1 22 0 195 75 19 57 chr1 13231650 13231703 -229432650 + (CGGGG)n Simple_repeat Simple_repeat 1 51 0 287 325 73 0 chr1 13233094 13233217 -229431136 + MIR SINE MIR 67 198 -64 261 186 0 34 chr1 13233730 13233789 -229430564 - MIR SINE MIR -103 159 103 245 304 43 11 chr1 13233935 13234027 -229430326 + MIR SINE MIR 48 142 -66 759 180 0 8 chr1 13234036 13234164 -229430189 + AluJo/FLAM SINE Alu 1 127 -175 1745 88 65 54 chr1 13234167 13234461 -229429892 + AluSx SINE Alu 1 297 -15 921 272 34 8 chr1 13234513 13234752 -229429601 + MIR SINE MIR 12 256 -6 256 326 141 16 chr1 13234772 13234956 -229429397 - L2 LINE L2 -39 3233 3027 204 268 0 0 chr1 13235362 13235433 -229428920 + GA-rich Low_complexity Low_complexity 1 71 0 182 150 25 0 chr1 13236598 13236638 -229427715 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 239 289 36 0 chr1 13236744 13236827 -229427526 + MIR SINE MIR 92 177 -85 231 61 0 0 chr1 13237162 13237195 -229427158 + (GGCTG)n Simple_repeat Simple_repeat 1 33 0 490 218 49 35 chr1 13237644 13237786 -229426567 + L2 LINE L2 3170 3313 0 200 315 65 11 chr1 13238862 13238954 -229425399 - L2 LINE L2 -1 3271 3175 203 333 95 0 chr1 13239006 13239090 -229425263 - L2 LINE L2 -44 3228 3137 269 272 22 33 chr1 13240118 13240210 -229424143 - MIR SINE MIR -171 91 1 242 333 13 0 chr1 13240216 13240291 -229424062 + L3 LINE CR1 1306 1381 -196 29 0 0 0 chr1 13240391 13240420 -229423933 + AT_rich Low_complexity Low_complexity 1 29 0 1959 137 7 0 chr1 13240420 13240705 -229423648 - AluJo SINE Alu -25 287 1 262 209 291 9 chr1 13240724 13240834 -229423519 - L2 LINE L2 -17 3296 3156 359 281 67 22 chr1 13240839 13240974 -229423379 - MIR SINE MIR -1 261 121 982 118 0 14 chr1 13240974 13241118 -229423235 + AluSq/x SINE Alu 1 142 -171 288 77 0 0 chr1 13241143 13241182 -229423171 + (A)n Simple_repeat Simple_repeat 1 39 0 333 250 0 0 chr1 13241184 13241252 -229423101 - MIR SINE MIR -136 126 59 2241 105 0 16 chr1 13241252 13241567 -229422786 - AluSx SINE Alu -1 311 2 570 298 93 31 chr1 13241623 13241682 -229422671 - L2 LINE L2 -228 3085 3031 2080 126 0 7 chr1 13241682 13241983 -229422370 - AluSx SINE Alu -13 299 1 570 298 93 31 chr1 13241983 13242181 -229422172 - L2 LINE L2 -282 3031 2812 216 214 0 0 chr1 13242364 13242420 -229421933 + (ATG)n Simple_repeat Simple_repeat 3 58 0 223 404 11 11 chr1 13242499 13242593 -229421760 - MIR SINE MIR -73 135 42 950 74 0 0 chr1 13242714 13242835 -229421518 - AluSg/x SINE Alu -9 301 181 2223 95 3 0 chr1 13243144 13243439 -229420914 - AluSc SINE Alu -13 296 1 2103 103 13 7 chr1 13244633 13244933 -229419420 + AluSx SINE Alu 1 302 -10 370 283 48 11 chr1 13245166 13245328 -229419025 - MIR SINE MIR -62 200 36 203 268 0 36 chr1 13245361 13245417 -229418936 + L2 LINE L2 3218 3271 -1 201 108 0 0 chr1 13245625 13245662 -229418691 + (T)n Simple_repeat Simple_repeat 1 37 0 505 303 69 16 chr1 13245714 13245902 -229418451 - MIR SINE MIR -9 253 56 2208 115 3 0 chr1 13246135 13246439 -229417914 - AluSx SINE Alu -7 305 1 756 226 115 14 chr1 13246527 13246744 -229417609 + MIR SINE MIR 19 257 -5 203 318 54 31 chr1 13246777 13246906 -229417447 - L2 LINE L2 -147 3125 2994 264 77 0 0 chr1 13247216 13247255 -229417098 + (A)n Simple_repeat Simple_repeat 1 39 0 277 273 0 0 chr1 13247789 13247844 -229416509 - MIR SINE MIR -84 124 70 355 282 87 27 chr1 13247921 13248070 -229416283 + MIR SINE MIR 16 173 -89 480 293 92 44 chr1 13248074 13248323 -229416030 - MLT1K LTR MaLR -13 575 315 1118 94 0 0 chr1 13249232 13249381 -229414972 - AluSg/x SINE Alu -17 293 145 2570 39 0 3 chr1 13250218 13250525 -229413828 + AluY SINE Alu 1 306 -5 499 306 73 10 chr1 13250589 13250663 -229413690 - MIR SINE MIR -15 247 179 1959 63 47 0 chr1 13250663 13250917 -229413436 - AluY SINE Alu -45 266 1 499 306 73 10 chr1 13250917 13251048 -229413305 - MIR SINE MIR -83 179 29 381 264 69 125 chr1 13251875 13252163 -229412190 + L2 LINE L2 2924 3195 -77 247 171 0 0 chr1 13252197 13252238 -229412115 - L2 LINE L2 -12 3260 3220 2189 118 0 0 chr1 13252321 13252618 -229411735 + AluSx SINE Alu 1 297 -15 2055 113 0 7 chr1 13252658 13252941 -229411412 - AluSx SINE Alu -31 281 1 566 237 58 0 chr1 13252941 13253080 -229411273 - MIR SINE MIR -114 148 2 506 279 96 10 chr1 13253428 13253625 -229410728 + MIR SINE MIR 34 247 -15 1055 70 5 48 chr1 13253643 13253753 -229410600 + (TTCC)n Simple_repeat Simple_repeat 2 103 -77 1817 131 52 0 chr1 13253753 13254059 -229410294 - AluSx SINE Alu 0 320 1 1055 70 5 48 chr1 13254059 13254134 -229410219 + (TTCC)n Simple_repeat Simple_repeat 103 180 0 181 160 20 20 chr1 13254133 13254183 -229410170 + C-rich Low_complexity Low_complexity 2 51 0 * 748 114 8 15 chr1 13254187 13254319 -229410034 + (TTTC)n Simple_repeat Simple_repeat 4 134 0 307 140 0 0 chr1 13255325 13255375 -229408978 - L2 LINE L2 0 3313 3264 1506 202 6 26 chr1 13255390 13255702 -229408651 + AluJb SINE Alu 1 306 -6 396 261 18 27 chr1 13256525 13256636 -229407717 - L2 LINE L2 -2 3270 3161 424 282 0 0 chr1 13257040 13257143 -229407210 - MER63 DNA MER1_type -273 787 685 243 273 0 0 chr1 13257139 13257194 -229407159 - MER63 DNA MER1_type -95 741 687 * 321 306 65 0 chr1 13257190 13257298 -229407055 - MER63 DNA MER1_type -321 741 1 189 310 216 6 chr1 13257765 13257819 -229406534 + L2 LINE L2 3005 3046 -267 2348 75 0 7 chr1 13257819 13258125 -229406228 - AluY SINE Alu -5 306 3 189 310 216 6 chr1 13258125 13258241 -229406112 + L2 LINE L2 3046 3211 -102 1917 134 0 0 chr1 13258268 13258544 -229405809 - AluSx SINE Alu -16 296 21 333 191 0 101 chr1 13258910 13258942 -229405411 - L1ME4a LINE L1 0 6121 6087 2102 120 3 3 chr1 13258942 13259241 -229405112 + AluSq SINE Alu 1 299 -14 333 191 0 101 chr1 13259241 13259297 -229405056 - L1ME4a LINE L1 -34 6087 6042 603 192 6 72 chr1 13260375 13260542 -229403811 + MER69 DNA AcHobo 43 198 -2328 299 225 98 70 chr1 13260549 13260591 -229403762 + MER69 DNA AcHobo 718 757 -1769 1708 245 80 15 chr1 13260591 13260883 -229403470 - MLT1D LTR MaLR 0 505 169 2089 127 17 0 chr1 13260883 13261182 -229403171 - AluSx SINE Alu -8 304 1 1708 245 80 15 chr1 13261182 13261363 -229402990 - MLT1D LTR MaLR -336 169 1 299 225 98 70 chr1 13261363 13261401 -229402952 + MER69 DNA AcHobo 757 792 -1734 210 37 0 0 chr1 13261401 13261428 -229402925 + (TG)n Simple_repeat Simple_repeat 2 28 0 299 225 98 70 chr1 13261428 13261467 -229402886 + MER69 DNA AcHobo 792 2150 -376 303 186 0 34 chr1 13261473 13261532 -229402821 + L1MC4 LINE L1 6640 6696 -1346 974 177 0 61 chr1 13261532 13261713 -229402640 - AluJb SINE Alu -18 294 125 497 164 151 20 chr1 13261717 13261869 -229402484 + MER69 DNA AcHobo 2152 2323 -203 1717 151 14 14 chr1 13261966 13262250 -229402103 + AluJb SINE Alu 5 288 -24 329 329 62 71 chr1 13262282 13262412 -229401941 + L2 LINE L2 2920 3050 -222 2074 101 42 0 chr1 13262412 13262699 -229401654 + AluSq SINE Alu 1 299 -14 329 329 62 71 chr1 13262699 13262905 -229401448 + L2 LINE L2 3050 3253 -19 218 283 0 0 chr1 13262988 13263041 -229401312 - MIR SINE MIR -162 100 48 216 162 27 0 chr1 13263759 13263796 -229400557 - MER91 DNA MER1_type -102 38 1 242 308 33 0 chr1 13264034 13264125 -229400228 + MIR SINE MIR 52 145 -63 195 138 0 0 chr1 13264422 13264451 -229399902 + MIR SINE MIR 116 144 -118 372 210 12 0 chr1 13264569 13264650 -229399703 + MIR3 SINE MIR 110 191 -17 404 279 29 22 chr1 13264879 13265015 -229399338 - Charlie8 DNA MER1_type -2142 275 139 420 252 8 47 chr1 13265017 13265144 -229399209 + MIR SINE MIR 126 247 -15 319 267 9 57 chr1 13265852 13265957 -229398396 + MIR SINE MIR 54 153 -109 2541 179 50 29 chr1 13266087 13266145 -229398208 - MER74A LTR ERVL -27 531 476 2427 78 0 0 chr1 13266145 13266453 -229397900 + AluSq SINE Alu 1 308 -5 2541 179 50 29 chr1 13266453 13266912 -229397441 - MER74A LTR ERVL -82 476 3 195 274 164 0 chr1 13266915 13266988 -229397365 - MIR SINE MIR -94 114 30 1033 280 84 36 chr1 13267139 13267477 -229396876 - MLT1K LTR MaLR -5 583 220 2186 110 0 3 chr1 13267477 13267777 -229396576 - AluSx SINE Alu -13 299 1 1033 280 84 36 chr1 13267777 13267856 -229396497 - MLT1K LTR MaLR -368 220 146 303 130 0 0 chr1 13267859 13267913 -229396440 + (TG)n Simple_repeat Simple_repeat 2 55 0 535 296 58 37 chr1 13268114 13268303 -229396050 + MIR3 SINE MIR 5 197 -11 272 300 83 17 chr1 13268363 13268510 -229395843 + MER5B DNA MER1_type 42 187 -2 207 234 0 31 chr1 13268900 13268964 -229395389 + MIR SINE MIR 84 145 -63 489 258 50 13 chr1 13269243 13269402 -229394951 + MIR SINE MIR 8 172 -90 518 290 93 0 chr1 13269484 13269667 -229394686 + MIR SINE MIR 63 262 0 341 292 9 35 chr1 13270153 13270266 -229394087 + MIR SINE MIR 47 156 -106 1761 152 0 23 chr1 13270268 13270571 -229393782 - AluJb SINE Alu -16 296 1 185 194 0 113 chr1 13271606 13271668 -229392685 + L3b LINE CR1 1304 1358 -225 760 192 62 13 chr1 13271677 13271901 -229392452 + MER113 DNA MER1_type? 1 235 -286 419 257 50 14 chr1 13272317 13272457 -229391896 + MIR3 SINE MIR 21 165 -43 1910 187 18 45 chr1 13272466 13272760 -229391593 + MLT2D LTR ERVL 2 365 -155 2650 93 11 11 chr1 13272760 13273124 -229391229 - THE1B LTR MaLR 0 364 1 1910 187 18 45 chr1 13273124 13273276 -229391077 + MLT2D LTR ERVL 365 520 0 457 319 45 33 chr1 13273378 13273683 -229390670 - MLT1L LTR MaLR -23 592 248 586 264 275 26 chr1 13274063 13274518 -229389835 + MLT1K LTR MaLR 15 582 -6 421 215 61 100 chr1 13274582 13274752 -229389601 - MIR SINE MIR -63 145 10 455 319 101 5 chr1 13274832 13275020 -229389333 - MIR SINE MIR 0 262 57 251 250 15 15 chr1 13275317 13275385 -229388968 + G-rich Low_complexity Low_complexity 2 69 0 4029 133 85 75 chr1 13276244 13277597 -229386756 - pTR5 LTR ERV1 0 2438 74 437 295 51 19 chr1 13277604 13277760 -229386593 - MLT1I LTR MaLR -39 370 210 2039 120 27 0 chr1 13278201 13278502 -229385851 - AluSx SINE Alu -3 309 1 1832 212 17 29 chr1 13278505 13278553 -229385800 - L1MB7 LINE L1 -5 6179 6132 2186 105 10 0 chr1 13278553 13278849 -229385504 - AluSx SINE Alu -13 299 1 1832 212 17 29 chr1 13278849 13279219 -229385134 - L1MB7 LINE L1 -52 6132 5766 1755 160 45 0 chr1 13279225 13279513 -229384840 - AluJo SINE Alu -11 301 1 369 347 52 19 chr1 13279521 13279792 -229384561 + L2 LINE L2 2697 2976 -338 485 244 29 29 chr1 13279868 13280073 -229384280 - L1MC5 LINE L1 -170 7791 7587 658 268 53 13 chr1 13280234 13280462 -229383891 - L1MC5 LINE L1 -465 7496 7260 1159 88 0 0 chr1 13280462 13280621 -229383732 - AluSc SINE Alu -1 308 150 905 214 90 0 chr1 13280753 13280954 -229383399 + MER20 DNA MER1_type 1 219 0 1512 171 21 21 chr1 13281179 13281314 -229383039 + AluJo SINE Alu 1 135 -177 2092 121 0 7 chr1 13281314 13281611 -229382742 + AluSq SINE Alu 1 295 -18 1512 171 21 21 chr1 13281611 13281755 -229382598 + AluJo SINE Alu 134 280 -32 510 281 35 25 chr1 13281756 13281955 -229382398 - L1MC5 LINE L1 -1958 5850 5650 313 317 21 83 chr1 13281988 13282228 -229382125 + L2 LINE L2 3007 3231 -41 363 184 0 122 chr1 13282231 13282267 -229382086 + MER81 DNA DNA 29 68 -46 2033 124 3 3 chr1 13282267 13282565 -229381788 - AluSx SINE Alu -14 298 1 363 184 0 122 chr1 13282565 13282626 -229381727 + MER81 DNA DNA 68 114 0 262 116 0 0 chr1 13282626 13282669 -229381684 + L2 LINE L2 3267 3309 -4 550 345 31 31 chr1 13282684 13282974 -229381379 + MER102a DNA MER1_type 31 320 -10 313 343 0 37 chr1 13282985 13283119 -229381234 + MIR SINE MIR 6 134 -128 210 265 20 39 chr1 13283432 13283534 -229380819 + (CTGGGG)n Simple_repeat Simple_repeat 3 102 0 456 282 67 55 chr1 13283820 13284075 -229380278 + L2 LINE L2 3014 3271 -1 1616 188 0 13 chr1 13284378 13284676 -229379677 - AluJb SINE Alu -7 305 12 314 326 11 0 chr1 13286393 13286488 -229377865 + MIR3 SINE MIR 62 157 -51 524 254 62 40 chr1 13286503 13286680 -229377673 - MIR3 SINE MIR -23 185 5 459 261 23 15 chr1 13286808 13286938 -229377415 + MIR SINE MIR 20 150 -58 1156 210 48 12 chr1 13287647 13287899 -229376454 - MIR SINE MIR 0 262 2 537 174 0 0 chr1 13288627 13288725 -229375628 - FLAM_A SINE Alu -1 141 44 2076 131 3 6 chr1 13288871 13289184 -229375169 + AluSx SINE Alu 1 312 0 489 335 179 58 chr1 13289486 13289813 -229374540 - L2 LINE L2 -255 3058 2772 1923 93 0 45 chr1 13289813 13290152 -229374201 + AluSx SINE Alu 7 332 0 489 335 179 58 chr1 13290152 13290175 -229374178 - L2 LINE L2 -541 2772 2753 1472 165 13 0 chr1 13290175 13290412 -229373941 + AluJo SINE Alu 26 265 -47 489 335 179 58 chr1 13290412 13290789 -229373564 - L2 LINE L2 -560 2753 2238 313 270 165 0 chr1 13290848 13290963 -229373390 + L2 LINE L2 3138 3271 -1 803 304 143 11 chr1 13290981 13291330 -229373023 - L2 LINE L2 0 3313 2919 471 231 18 2 chr1 13292492 13292628 -229371725 - MIR SINE MIR -62 146 17 731 211 128 15 chr1 13293274 13293478 -229370875 - MIR SINE MIR -5 257 31 24 67 0 0 chr1 13293521 13293566 -229370787 + AT_rich Low_complexity Low_complexity 1 45 0 252 0 0 0 chr1 13293624 13293652 -229370701 + (TTG)n Simple_repeat Simple_repeat 2 29 0 717 279 69 26 chr1 13293688 13293921 -229370432 + MIR SINE MIR 20 262 0 1560 226 206 28 chr1 13293987 13294307 -229370046 - MLT1G1 LTR MaLR 0 595 333 1769 208 38 58 chr1 13294307 13294759 -229369594 - LTR47B LTR ERVL 0 443 1 1560 226 206 28 chr1 13294759 13294903 -229369450 - MLT1G1 LTR MaLR -262 333 216 2164 125 0 0 chr1 13294903 13295214 -229369139 - AluSx SINE Alu -1 311 1 1560 226 206 28 chr1 13295214 13295253 -229369100 - MLT1G1 LTR MaLR -379 216 1 702 314 109 21 chr1 13295282 13295620 -229368733 - MLT1J2 LTR MaLR -50 400 33 459 264 0 0 chr1 13295654 13295764 -229368589 + L2 LINE L2 3203 3312 -1 1621 178 7 0 chr1 13296797 13297072 -229367281 - AluJo SINE Alu -26 286 10 247 350 133 0 chr1 13297338 13297458 -229366895 + L2 LINE L2 3136 3271 -1 2231 111 0 6 chr1 13297465 13297780 -229366573 + AluSp SINE Alu 1 313 0 1070 252 73 69 chr1 13297954 13298082 -229366271 - MLT1H1 LTR MaLR 0 555 429 2889 111 21 12 chr1 13298082 13298506 -229365847 - MSTA LTR MaLR 0 428 1 1070 252 73 69 chr1 13298506 13298925 -229365428 - MLT1H1 LTR MaLR -126 429 7 527 296 77 6 chr1 13298947 13299116 -229365237 + MIR3 SINE MIR 9 189 -19 381 275 62 67 chr1 13299731 13299909 -229364444 + MIR SINE MIR 16 192 -70 190 343 27 0 chr1 13300356 13300429 -229363924 - MER5A DNA MER1_type -41 148 74 464 14 55 0 chr1 13300964 13301037 -229363316 + (CAAAAA)n Simple_repeat Simple_repeat 2 78 0 1663 151 3 25 chr1 13301162 13301479 -229362874 - MER33 DNA MER1_type -13 311 2 405 173 198 0 chr1 13301696 13301777 -229362576 - FLAM_A SINE Alu -36 106 10 1517 160 132 7 chr1 13302561 13302883 -229361470 - MLT1A2 LTR MaLR 0 390 1 245 149 0 43 chr1 13302914 13302961 -229361392 - MLT1J LTR MaLR -376 135 91 498 291 62 59 chr1 13303156 13303572 -229360781 - L1ME4a LINE L1 -177 5944 5525 2191 114 0 0 chr1 13303572 13303869 -229360484 + AluSg SINE Alu 1 297 -13 498 291 62 59 chr1 13303869 13303940 -229360413 - L1ME4a LINE L1 -596 5525 5456 2380 167 39 9 chr1 13304187 13304624 -229359729 - MER66B LTR ERV1 -10 476 27 844 168 0 0 chr1 13305153 13305284 -229359069 - FLAM_A SINE Alu -2 131 1 825 248 41 11 chr1 13305396 13305666 -229358687 - LTR16C LTR ERVL 0 491 214 2377 121 5 39 chr1 13305773 13306161 -229358192 + THE1C LTR MaLR 1 375 0 468 318 40 6 chr1 13306242 13306415 -229357938 - MIR SINE MIR -75 187 9 200 172 17 0 chr1 13306952 13307010 -229357343 + (TA)n Simple_repeat Simple_repeat 2 60 0 580 311 49 0 chr1 13307010 13307193 -229357160 - MIR SINE MIR -58 204 13 1895 141 17 0 chr1 13307269 13307566 -229356787 - AluSx SINE Alu -9 303 2 802 261 89 43 chr1 13308237 13308608 -229355745 - L2 LINE L2 0 3313 2926 429 262 116 77 chr1 13308652 13308725 -229355628 - L2 LINE L2 -529 2785 2716 326 23 23 0 chr1 13308725 13308768 -229355585 + (TG)n Simple_repeat Simple_repeat 1 44 0 192 40 0 0 chr1 13308769 13308794 -229355559 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 1547 141 43 50 chr1 13308795 13308971 -229355382 - AluJb SINE Alu -37 275 99 2060 92 3 7 chr1 13308971 13309290 -229355063 - AluSq SINE Alu 0 318 1 1547 141 43 50 chr1 13309290 13309389 -229354964 - AluJb SINE Alu -213 99 1 429 262 116 77 chr1 13309389 13309647 -229354706 - L2 LINE L2 -597 2717 2437 935 248 16 29 chr1 13309850 13309952 -229354401 - MIR SINE MIR 0 262 160 3796 52 2 0 chr1 13309952 13310395 -229353958 + MLT2A1 LTR ERVL 1 444 0 935 248 16 29 chr1 13310395 13310538 -229353815 - MIR SINE MIR -102 160 20 1708 144 2 138 chr1 13310845 13310958 -229353395 - MLT1B LTR MaLR 0 390 263 2032 107 12 55 chr1 13310958 13311284 -229353069 + AluSx SINE Alu 1 312 0 1708 144 2 138 chr1 13311284 13311432 -229352921 - MLT1B LTR MaLR -127 263 211 1895 158 0 0 chr1 13311432 13311723 -229352630 - AluJb SINE Alu -21 291 1 1708 144 2 138 chr1 13311723 13311903 -229352450 - MLT1B LTR MaLR -179 211 8 2277 149 30 10 chr1 13312515 13312939 -229351414 + MLT2C2 LTR ERVL 1 480 -40 224 241 0 19 chr1 13312939 13312993 -229351360 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 242 166 0 9 chr1 13313009 13313066 -229351287 + MLT2C2 LTR ERVL 422 464 0 423 280 223 24 chr1 13313238 13313449 -229350904 + MIR SINE MIR 2 254 -8 254 140 0 35 chr1 13314192 13314249 -229350104 - MLT2B1 LTR ERVL 0 520 466 257 289 0 13 chr1 13314251 13314327 -229350026 + (TATG)n Simple_repeat Simple_repeat 2 76 0 266 107 89 0 chr1 13314327 13314383 -229349970 - MLT2C2 LTR ERVL -40 424 364 201 237 0 0 chr1 13314394 13314453 -229349900 + (TG)n Simple_repeat Simple_repeat 1 59 0 707 299 0 6 chr1 13314558 13314735 -229349618 - MIR SINE MIR -85 177 2 245 220 0 0 chr1 13314890 13314940 -229349413 - MER117 DNA MER1_type -104 93 44 258 231 51 26 chr1 13314949 13315027 -229349326 - MLT1K LTR MaLR -36 552 473 200 35 35 0 chr1 13315491 13315520 -229348833 + (TG)n Simple_repeat Simple_repeat 2 31 0 611 212 42 12 chr1 13315962 13316135 -229348218 - MIR SINE MIR -44 164 1 260 325 12 0 chr1 13316730 13316810 -229347543 + L2 LINE L2 3179 3259 -54 600 259 6 36 chr1 13316818 13316984 -229347369 - MER91B DNA MER1_type -26 164 4 2168 116 0 0 chr1 13317352 13317653 -229346700 + AluSq SINE Alu 1 301 -12 2251 86 16 3 chr1 13317900 13318203 -229346150 + AluY SINE Alu 1 307 -4 194 425 45 0 chr1 13318208 13318342 -229346011 - MIR SINE MIR -10 252 113 1059 206 0 5 chr1 13318345 13318549 -229345804 - MER58A DNA MER1_type 0 224 22 515 270 40 3 chr1 13318636 13318787 -229345566 + MIR SINE MIR 30 183 -62 459 355 39 0 chr1 13319657 13319812 -229344541 - MIR SINE MIR -54 208 48 489 269 17 0 chr1 13319883 13320002 -229344351 + MIR SINE MIR 47 167 -95 1535 228 78 42 chr1 13320031 13320482 -229343871 - MLT1C LTR MaLR 0 467 1 417 211 48 78 chr1 13321057 13321223 -229343130 - L1ME4a LINE L1 -1 6120 5960 1494 147 88 28 chr1 13321257 13321328 -229343025 - AluJo SINE Alu -5 307 242 2461 178 38 23 chr1 13321328 13321807 -229342546 - MER66B LTR ERV1 0 486 1 1494 147 88 28 chr1 13321807 13322020 -229342333 - AluJo SINE Alu -70 242 6 354 317 11 27 chr1 13322027 13322210 -229342143 - L1ME4a LINE L1 -209 5912 5733 189 244 58 58 chr1 13322832 13322918 -229341435 + MER5B DNA MER1_type 28 113 -65 588 259 90 21 chr1 13323169 13323358 -229340995 - MIR SINE MIR -11 251 50 1345 165 0 56 chr1 13323379 13323483 -229340870 - L1M4 LINE L1 -883 5263 5155 2097 106 33 0 chr1 13323483 13323785 -229340568 - AluSx SINE Alu 0 312 1 1345 165 0 56 chr1 13323785 13324001 -229340352 - L1M4 LINE L1 -991 5155 4961 789 175 88 29 chr1 13324011 13324182 -229340171 - AluJo SINE Alu -12 300 120 737 135 8 0 chr1 13324195 13324321 -229340032 + CT-rich Low_complexity Low_complexity 1 127 0 758 186 8 0 chr1 13324323 13324447 -229339906 - AluJo SINE Alu -187 125 1 243 294 156 0 chr1 13325389 13325498 -229338855 - MIR3 SINE MIR -48 160 35 273 29 0 0 chr1 13326122 13326156 -229338197 + (TG)n Simple_repeat Simple_repeat 1 34 0 208 385 83 0 chr1 13326666 13326775 -229337578 + L2 LINE L2 3155 3272 0 262 167 21 0 chr1 13326876 13326924 -229337429 - L2 LINE L2 0 3313 3265 604 324 49 0 chr1 13328564 13328768 -229335585 - MIR SINE MIR -45 217 4 276 30 0 0 chr1 13329458 13329491 -229334862 + (CA)n Simple_repeat Simple_repeat 1 33 0 686 219 25 6 chr1 13329493 13329653 -229334700 - MLT1G LTR MaLR -2 588 426 341 315 11 11 chr1 13329670 13329833 -229334520 - MLT1G1 LTR MaLR -308 241 79 1634 218 52 8 chr1 13329833 13330200 -229334153 - MER70A LTR ERVL 0 472 90 694 149 104 52 chr1 13330196 13330350 -229334003 - MER70A LTR ERVL -310 162 1 * 307 115 0 0 chr1 13330367 13330419 -229333934 - MLT1G1 LTR MaLR -532 63 12 514 308 104 23 chr1 13330472 13330771 -229333582 + MLT1K LTR MaLR 138 460 -128 290 321 207 0 chr1 13331118 13331258 -229333095 + MIR SINE MIR 70 238 -24 340 397 43 5 chr1 13332058 13332242 -229332111 - MIR3 SINE MIR -5 203 13 2992 164 25 4 chr1 13332302 13332778 -229331575 + MER66B LTR ERV1 1 486 0 313 216 80 0 chr1 13333327 13333415 -229330938 + L2 LINE L2 2591 2685 -629 1541 208 40 103 chr1 13333418 13333943 -229330410 - MLT2B1 LTR ERVL -2 518 27 1127 288 81 34 chr1 13333975 13334124 -229330229 + L2 LINE L2 2699 2839 -474 1797 174 0 7 chr1 13334124 13334423 -229329930 - AluJo SINE Alu -15 297 1 1127 288 81 34 chr1 13334423 13334819 -229329534 + L2 LINE L2 2839 3313 0 2070 102 11 0 chr1 13335883 13336168 -229328185 + AluSx SINE Alu 1 288 -24 1777 218 93 29 chr1 13336168 13336236 -229328117 - L1ME3 LINE L1 0 6162 6100 2502 50 0 0 chr1 13336236 13336535 -229327818 + AluY SINE Alu 1 299 -12 1777 218 93 29 chr1 13336535 13337044 -229327309 - L1ME3 LINE L1 -62 6100 5548 1933 140 20 3 chr1 13337471 13337764 -229326589 + AluJo SINE Alu 1 298 -14 2333 79 0 29 chr1 13337766 13338082 -229326271 + AluY SINE Alu 1 307 -4 525 144 22 44 chr1 13338446 13338627 -229325726 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 889 231 0 0 chr1 13338635 13338808 -229325545 - AluJo SINE Alu -18 294 122 214 274 151 0 chr1 13340369 13340442 -229323911 - L2 LINE L2 -21 3251 3168 206 318 146 0 chr1 13340474 13340584 -229323769 - MIR SINE MIR -14 248 123 630 262 84 5 chr1 13340589 13340780 -229323573 + MLT1H LTR MaLR 2 207 -342 1210 219 62 78 chr1 13340780 13341096 -229323257 - MLT1C LTR MaLR -1 466 157 1886 173 19 73 chr1 13341096 13341506 -229322847 - MLT1B LTR MaLR 0 390 3 1210 219 62 78 chr1 13341506 13341627 -229322726 - MLT1C LTR MaLR -310 157 36 21 0 0 0 chr1 13341629 13341650 -229322703 + AT_rich Low_complexity Low_complexity 1 21 0 2099 127 0 13 chr1 13341651 13341966 -229322387 - AluSx SINE Alu -1 311 1 698 261 76 33 chr1 13342007 13342337 -229322016 + MLT1H LTR MaLR 205 548 -1 195 220 40 0 chr1 13342340 13342390 -229321963 - MIR SINE MIR -141 121 70 423 284 37 15 chr1 13342533 13342667 -229321686 + MIR SINE MIR 56 192 -70 188 254 211 0 chr1 13342822 13342893 -229321460 + MIR SINE MIR 33 118 -90 234 342 118 58 chr1 13343456 13343819 -229320534 - L2 LINE L2 -77 3195 2811 231 345 108 7 chr1 13344375 13344523 -229319830 - MIR SINE MIR -41 221 59 204 277 0 0 chr1 13344844 13344891 -229319462 + CT-rich Low_complexity Low_complexity 3 49 0 654 332 53 11 chr1 13345089 13345400 -229318953 - L1MC/D LINE L1 -693 5651 5414 185 377 35 9 chr1 13345434 13345548 -229318805 + MIR SINE MIR 30 146 -62 211 229 181 24 chr1 13346267 13346350 -229318003 + MIR SINE MIR 108 203 -59 219 36 0 0 chr1 13346528 13346556 -229317797 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1489 170 59 4 chr1 13346565 13346835 -229317518 - AluSx SINE Alu -27 285 1 408 339 121 0 chr1 13347404 13347578 -229316775 + MIR SINE MIR 12 206 -56 1260 248 72 19 chr1 13347584 13348012 -229316341 + MLT1C LTR MaLR 16 466 -1 232 308 94 8 chr1 13349037 13349154 -229315199 + MIR SINE MIR 61 187 -75 225 308 19 47 chr1 13350234 13350341 -229314012 - MIR3 SINE MIR 0 208 105 418 278 57 17 chr1 13351208 13351384 -229312969 + MIR SINE MIR 79 261 -1 422 323 82 43 chr1 13352005 13352284 -229312069 + L2 LINE L2 2908 3197 -75 1639 164 48 48 chr1 13352531 13352611 -229311742 + L1MB3 LINE L1 5805 5884 -299 2331 88 7 3 chr1 13352611 13352918 -229311435 + AluSx SINE Alu 1 308 -4 1639 164 48 48 chr1 13352918 13353162 -229311191 + L1MB3 LINE L1 5884 6133 -50 1960 104 14 28 chr1 13353162 13353473 -229310880 + AluSx SINE Alu 1 307 0 1639 164 48 48 chr1 13353473 13353525 -229310828 + L1MB3 LINE L1 6132 6183 0 237 287 126 0 chr1 13353779 13353866 -229310487 - MIR SINE MIR -67 141 44 452 248 16 47 chr1 13354259 13354388 -229309965 + MIR SINE MIR 20 144 -118 305 311 66 0 chr1 13356783 13356905 -229307448 + MIR3 SINE MIR 30 159 -49 399 275 158 0 chr1 13357567 13357738 -229306615 + L2 LINE L2 3115 3312 -1 184 273 93 93 chr1 13357924 13358063 -229306290 - L2 LINE L2 -56 3257 3119 804 349 101 9 chr1 13358078 13358505 -229305848 - L2 LINE L2 0 3313 2848 2184 99 13 0 chr1 13358593 13358897 -229305456 - AluY SINE Alu -3 308 1 1991 117 31 14 chr1 13358933 13359223 -229305130 + AluSx SINE Alu 1 295 -17 577 301 170 16 chr1 13359725 13360037 -229304316 - L2 LINE L2 -1 3271 2912 1284 124 4 68 chr1 13360141 13360375 -229303978 + AluJo SINE Alu 87 305 -7 729 235 75 5 chr1 13360492 13360692 -229303661 - MIR SINE MIR -36 226 13 357 339 11 11 chr1 13361190 13361367 -229302986 + G-rich Low_complexity Low_complexity 3 179 0 333 307 6 28 chr1 13361404 13361583 -229302770 + G-rich Low_complexity Low_complexity 3 177 0 217 222 60 54 chr1 13362548 13362715 -229301638 + (CTCTG)n Simple_repeat Simple_repeat 3 170 0 220 259 176 0 chr1 13362960 13363045 -229301308 - MIR SINE MIR -74 188 89 392 148 0 87 chr1 13363179 13363375 -229300978 + (GGCTG)n Simple_repeat Simple_repeat 2 180 0 * 429 0 0 264 chr1 13363342 13363581 -229300772 + (GCTG)n Simple_repeat Simple_repeat 4 179 0 * 431 138 0 87 chr1 13363432 13363628 -229300725 + (GGCTG)n Simple_repeat Simple_repeat 2 180 0 273 325 212 0 chr1 13364049 13364332 -229300021 + L2 LINE L2 2446 2788 -526 201 74 0 0 chr1 13364476 13364503 -229299850 + (TCTCC)n Simple_repeat Simple_repeat 1 27 0 238 145 16 65 chr1 13364515 13364577 -229299776 + C-rich Low_complexity Low_complexity 1 59 0 274 175 0 90 chr1 13364589 13364766 -229299587 + C-rich Low_complexity Low_complexity 2 162 0 222 317 139 47 chr1 13364768 13365172 -229299181 + L2 LINE L2 2827 3267 -5 449 348 81 5 chr1 13365828 13366049 -229298304 - MIR SINE MIR 0 262 25 403 289 28 85 chr1 13367325 13367536 -229296817 - MIR SINE MIR -27 235 37 331 296 43 62 chr1 13367605 13367767 -229296586 - MER91B DNA MER1_type -14 176 18 728 273 32 14 chr1 13368159 13368379 -229295974 + MIR SINE MIR 7 230 -32 246 296 49 0 chr1 13368939 13369020 -229295333 + L2 LINE L2 3188 3272 0 274 196 69 4 chr1 13369265 13369354 -229294999 - MIR SINE MIR -71 137 33 411 264 23 16 chr1 13369599 13369728 -229294625 + MIR SINE MIR 63 192 -70 310 236 191 11 chr1 13371059 13371148 -229293205 + L2 LINE L2 3168 3272 0 802 216 18 0 chr1 13371887 13372054 -229292299 + MER5B DNA MER1_type 9 178 0 27 0 0 0 chr1 13372192 13372219 -229292134 + AT_rich Low_complexity Low_complexity 1 27 0 549 210 249 24 chr1 13372241 13372446 -229291907 + L1MEc LINE L1 3 253 -6143 765 244 84 40 chr1 13372456 13372861 -229291492 + L1MEc LINE L1 1286 1708 -4688 1693 154 13 32 chr1 13372861 13373058 -229291295 - AluJo SINE Alu -7 305 106 2804 64 3 11 chr1 13373058 13373416 -229290937 + THE1A LTR MaLR 1 355 0 12309 82 2 10 chr1 13373416 13375008 -229289345 + THE1A-int LTR MaLR 1 1580 0 2638 95 3 14 chr1 13375008 13375367 -229288986 + THE1A LTR MaLR 1 355 0 1693 154 13 32 chr1 13375367 13375478 -229288875 - AluJo SINE Alu -203 109 1 3660 215 69 28 chr1 13375478 13376043 -229288310 + L1MEc LINE L1 1700 2241 -3974 1956 95 7 4 chr1 13376043 13376339 -229288014 - AluY SINE Alu 0 307 11 3660 215 69 28 chr1 13376339 13377271 -229287082 + L1MEc LINE L1 2241 3253 -2962 1545 123 28 16 chr1 13377271 13377524 -229286829 + L1MA1 LINE L1 6047 6302 0 3660 215 69 28 chr1 13377524 13377733 -229286620 + L1MEc LINE L1 3253 3452 -2763 1586 176 17 3 chr1 13377733 13378028 -229286325 - AluJo SINE Alu -13 299 1 540 197 49 8 chr1 13378030 13378152 -229286201 + L1MA10 LINE L1 6205 6331 -3 1447 176 7 21 chr1 13379094 13379373 -229284980 + AluJo SINE Alu 35 309 -3 1277 294 65 40 chr1 13379373 13380354 -229283999 + L1MEc LINE L1 815 1820 -4576 217 278 105 53 chr1 13380824 13380957 -229283396 - L2 LINE L2 0 3313 3174 389 291 0 0 chr1 13381007 13381093 -229283260 - MER5A DNA MER1_type -95 94 9 249 328 57 11 chr1 13381124 13381247 -229283106 - MIR SINE MIR -76 132 6 2268 154 137 0 chr1 13381281 13381683 -229282670 - MSTB2 LTR MaLR 0 457 1 895 246 14 27 chr1 13381825 13382045 -229282308 + MIR SINE MIR 46 262 0 304 315 33 30 chr1 13382253 13382394 -229281959 - MIR SINE MIR -32 176 68 2515 174 80 54 chr1 13382400 13382935 -229281418 + MLT2B3 LTR ERVL 6 554 0 282 293 0 66 chr1 13384499 13384605 -229279748 - MIR3 SINE MIR -98 110 12 317 300 79 32 chr1 13385357 13385547 -229278806 + MIR SINE MIR 52 250 -12 322 354 70 0 chr1 13385630 13385788 -229278565 + MIR3 SINE MIR 29 197 -11 1406 161 87 32 chr1 13385990 13386300 -229278053 + MSTA LTR MaLR 102 428 0 356 197 0 40 chr1 13386350 13386426 -229277927 - MIR SINE MIR -113 149 77 471 18 0 0 chr1 13386694 13386750 -229277603 + (TG)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr1 13386814 13386836 -229277517 + AT_rich Low_complexity Low_complexity 1 22 0 210 306 14 0 chr1 13386985 13387057 -229277296 - L2 LINE L2 -14 3258 3186 2095 118 10 0 chr1 13387786 13388075 -229276278 - AluSx SINE Alu -20 292 1 1600 115 0 21 chr1 13389855 13390089 -229274264 - AluSx SINE Alu -66 246 18 213 39 0 0 chr1 13390818 13390844 -229273509 + (TG)n Simple_repeat Simple_repeat 1 26 0 1079 239 139 16 chr1 13390850 13391289 -229273064 - L1ME3 LINE L1 -2 6160 5668 2050 135 7 0 chr1 13391329 13391625 -229272728 - AluSx SINE Alu -14 298 1 4921 141 31 16 chr1 13391660 13392161 -229272192 - L1MC1 LINE L1 -11 6322 5803 2286 106 3 0 chr1 13392161 13392472 -229271881 - AluSx SINE Alu 0 312 1 4921 141 31 16 chr1 13392472 13392784 -229271569 - L1MC1 LINE L1 -530 5803 5497 309 350 11 6 chr1 13393072 13393249 -229271104 + GA-rich Low_complexity Low_complexity 2 179 0 245 290 112 47 chr1 13393729 13393836 -229270517 + L2 LINE L2 2943 3056 -257 492 291 143 9 chr1 13393923 13394153 -229270200 + MIR SINE MIR 2 262 0 1021 243 152 49 chr1 13394201 13394654 -229269699 + MLT1G1 LTR MaLR 1 500 -95 381 190 13 0 chr1 13394906 13394985 -229269368 + MADE1 DNA Mariner 1 80 0 375 207 12 0 chr1 13395005 13395087 -229269266 + L1MB8 LINE L1 5861 5943 -235 707 286 113 3 chr1 13395097 13395415 -229268938 - L2 LINE L2 -642 2672 2320 2221 93 0 0 chr1 13396160 13396449 -229267904 - AluSx SINE Alu -23 289 1 488 285 64 76 chr1 13396451 13396781 -229267572 - L2 LINE L2 -13 3300 2975 617 188 45 0 chr1 13396879 13397012 -229267341 - L1MB3 LINE L1 -152 6031 5893 399 325 113 4 chr1 13398011 13398242 -229266111 - MIR SINE MIR -2 260 5 2240 106 0 6 chr1 13398843 13399155 -229265198 - AluSx SINE Alu -2 310 1 778 305 108 24 chr1 13399745 13400252 -229264101 - L2 LINE L2 -3 3269 2729 535 301 52 41 chr1 13400312 13400647 -229263706 - LTR16A LTR ERVL -106 351 1 255 207 17 0 chr1 13400650 13400708 -229263645 + MIR SINE MIR 83 141 -67 2085 198 101 17 chr1 13400726 13401191 -229263162 + MLT1D LTR MaLR 1 504 -1 994 200 22 0 chr1 13401272 13401457 -229262896 + MER3 DNA MER1_type 16 204 -5 553 256 74 47 chr1 13401749 13401816 -229262537 + Charlie8 DNA MER1_type 1 65 -265 2054 116 0 14 chr1 13401816 13402141 -229262212 + AluSq SINE Alu 1 313 0 553 256 74 47 chr1 13402141 13402331 -229262022 + Charlie8 DNA MER1_type 65 265 -65 437 295 69 21 chr1 13402975 13403171 -229261182 + MIR SINE MIR 16 222 -40 530 80 0 93 chr1 13403674 13403836 -229260517 + (TCTCTG)n Simple_repeat Simple_repeat 5 151 0 328 199 42 37 chr1 13403843 13404034 -229260319 - Harlequin LTR ERV1 -5819 1077 886 396 0 0 0 chr1 13405396 13405440 -229258913 + (TG)n Simple_repeat Simple_repeat 2 45 0 1683 221 24 3 chr1 13405648 13405988 -229258365 + MER7A DNA MER2_type 1 345 -1 23 0 0 0 chr1 13405988 13406011 -229258342 + AT_rich Low_complexity Low_complexity 1 23 0 210 143 0 0 chr1 13406130 13406165 -229258188 + (TG)n Simple_repeat Simple_repeat 1 35 0 765 262 56 9 chr1 13406741 13406974 -229257379 + MIR SINE MIR 7 250 -12 9346 93 26 30 chr1 13406997 13408252 -229256101 - Tigger1 DNA MER2_type 0 2418 1168 2080 129 3 0 chr1 13408252 13408554 -229255799 - AluSp SINE Alu -10 303 1 9346 93 26 30 chr1 13408554 13408771 -229255582 - Tigger1 DNA MER2_type -1250 1168 952 1327 90 10 5 chr1 13409444 13409644 -229254709 - Tigger1 DNA MER2_type -1479 939 739 421 294 169 25 chr1 13409802 13409962 -229254391 - MIR SINE MIR -41 221 39 1017 249 70 50 chr1 13410193 13410266 -229254087 + MLT1J LTR MaLR 134 204 -411 255 61 0 0 chr1 13410266 13410299 -229254054 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 2183 98 0 0 chr1 13410301 13410588 -229253765 - AluSx SINE Alu -25 287 1 1017 249 70 50 chr1 13410588 13410892 -229253461 + MLT1J LTR MaLR 204 615 0 1839 149 0 10 chr1 13411711 13412012 -229252341 + AluJo SINE Alu 1 298 -14 1502 159 91 34 chr1 13412062 13412382 -229251971 - MER44D DNA MER2_type -1 608 1 370 336 50 52 chr1 13412382 13412763 -229251590 - L2 LINE L2 -38 3234 2855 204 125 0 0 chr1 13413762 13413794 -229250559 + (TG)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr1 13413794 13413820 -229250533 + (GA)n Simple_repeat Simple_repeat 1 26 0 333 0 0 0 chr1 13414143 13414180 -229250173 + (TG)n Simple_repeat Simple_repeat 1 37 0 250 270 18 55 chr1 13414390 13414553 -229249800 + (TG)n Simple_repeat Simple_repeat 1 157 0 21 36 0 0 chr1 13415968 13415996 -229248357 + GC_rich Low_complexity Low_complexity 1 28 0 223 316 128 8 chr1 13418243 13418376 -229245977 - L3b LINE CR1 -125 1458 1310 731 251 5 35 chr1 13418537 13418740 -229245613 + MIR SINE MIR 58 254 -8 1388 154 57 4 chr1 13418974 13419220 -229245133 - AluJb SINE Alu -17 295 37 180 0 0 0 chr1 13419261 13419281 -229245072 + (TTA)n Simple_repeat Simple_repeat 3 22 0 310 160 0 0 chr1 13419306 13419356 -229244997 - AluJb SINE Alu -250 52 3 503 216 144 24 chr1 13419938 13420105 -229244248 - MIR SINE MIR -55 207 21 337 231 121 5 chr1 13420112 13420251 -229244102 - MIR SINE MIR -60 148 4 228 189 113 19 chr1 13420631 13420684 -229243669 - MIR3 SINE MIR -45 163 106 418 141 11 22 chr1 13420941 13421033 -229243320 + CT-rich Low_complexity Low_complexity 3 93 0 385 278 196 0 chr1 13421113 13421246 -229243107 - MIR SINE MIR -1 261 103 660 281 71 5 chr1 13421651 13421861 -229242492 + MIR SINE MIR 4 227 -35 893 281 33 0 chr1 13422075 13422317 -229242036 + MIR SINE MIR 5 254 -8 600 156 0 0 chr1 13422320 13422436 -229241917 - FRAM SINE Alu 0 178 63 2872 117 84 36 chr1 13422538 13423059 -229241294 - Tigger1 DNA MER2_type -1871 547 2 325 263 53 44 chr1 13423115 13423229 -229241124 + L2 LINE L2 3158 3272 0 1750 280 102 50 chr1 13423276 13423535 -229240818 + L1MEd LINE L1 45 289 -6021 2297 111 39 28 chr1 13423535 13423895 -229240458 - THE1B LTR MaLR 0 364 1 1750 280 102 50 chr1 13423895 13424561 -229239792 + L1MEd LINE L1 289 919 -5391 1812 134 3 54 chr1 13424561 13424875 -229239478 + AluSx SINE Alu 2 299 -13 1750 280 102 50 chr1 13424875 13425435 -229238918 + L1MEd LINE L1 919 1656 -4654 1950 133 13 10 chr1 13425472 13425773 -229238580 + AluJo SINE Alu 3 304 -8 2366 74 3 10 chr1 13425848 13426159 -229238194 + AluSp SINE Alu 1 309 -4 322 371 46 57 chr1 13426195 13426475 -229237878 + L1MEd LINE L1 1828 2104 -4206 405 278 17 9 chr1 13426479 13426594 -229237759 - MIR SINE MIR -74 134 19 2046 111 0 0 chr1 13426609 13426889 -229237464 + AluSx SINE Alu 1 280 -32 1011 124 6 23 chr1 13426893 13427070 -229237283 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 632 285 51 33 chr1 13427244 13427458 -229236895 - MIR SINE MIR -25 237 20 512 270 41 63 chr1 13427556 13427835 -229236518 + L1MC4 LINE L1 7651 7924 -118 1970 142 0 7 chr1 13427835 13428144 -229236209 + AluJo SINE Alu 6 312 0 512 270 41 63 chr1 13428144 13428183 -229236170 + L1MC4 LINE L1 7924 7962 -80 2020 138 0 31 chr1 13428335 13428654 -229235699 - AluSx SINE Alu -3 309 1 5136 149 14 33 chr1 13428728 13428852 -229235501 - MER49 LTR ERV1 -21 902 777 2360 167 43 14 chr1 13428852 13429266 -229235087 - MSTB LTR MaLR 0 426 1 5136 149 14 33 chr1 13429266 13429751 -229234602 - MER49 LTR ERV1 -146 777 313 2241 112 0 0 chr1 13429751 13430064 -229234289 - AluSq SINE Alu 0 313 1 5136 149 14 33 chr1 13430064 13430372 -229233981 - MER49 LTR ERV1 -610 313 1 346 100 100 43 chr1 13430636 13430706 -229233647 - MER81 DNA DNA -40 74 1 3451 279 67 24 chr1 13431245 13431475 -229232878 - L2 LINE L2 0 3313 3094 2202 112 0 0 chr1 13431475 13431770 -229232583 - AluSx SINE Alu -17 295 1 3451 279 67 24 chr1 13431770 13432294 -229232059 - L2 LINE L2 -219 3094 2594 2280 98 0 0 chr1 13432294 13432600 -229231753 + AluSx SINE Alu 1 306 -6 3451 279 67 24 chr1 13432600 13433011 -229231342 - L2 LINE L2 -719 2594 2202 7222 54 11 0 chr1 13433011 13434307 -229230046 + L1PA6 LINE L1 4846 6154 0 3451 279 67 24 chr1 13434307 13434690 -229229663 - L2 LINE L2 -1111 2202 1705 337 349 8 0 chr1 13435575 13435707 -229228646 - MIR SINE MIR -56 152 20 308 280 12 36 chr1 13435753 13435921 -229228432 + (TGGG)n Simple_repeat Simple_repeat 3 166 0 512 196 17 22 chr1 13437123 13437302 -229227051 + CT-rich Low_complexity Low_complexity 3 180 0 192 276 52 0 chr1 13437550 13437608 -229226745 - MIR SINE MIR 0 262 202 465 196 254 0 chr1 13437627 13437821 -229226532 + L2 LINE L2 2758 2996 -317 508 311 25 36 chr1 13438103 13438299 -229226054 - MIR SINE MIR -54 208 15 378 312 98 10 chr1 13438408 13438613 -229225740 + MIR SINE MIR 34 256 -6 430 29 88 0 chr1 13438873 13438941 -229225412 + (TTAGGG)n Simple_repeat Simple_repeat 5 78 0 397 228 88 26 chr1 13440219 13440333 -229224020 + MIR SINE MIR 17 137 -71 618 324 6 0 chr1 13440735 13440911 -229223442 - MER117 DNA MER1_type -6 191 15 605 312 104 51 chr1 13440979 13441288 -229223065 - L2 LINE L2 0 3313 3022 1892 146 0 10 chr1 13441288 13441583 -229222770 - AluSx SINE Alu -20 292 1 605 312 104 51 chr1 13441583 13441852 -229222501 - L2 LINE L2 -291 3022 2693 2107 116 3 3 chr1 13442973 13443276 -229221077 + AluSx SINE Alu 1 303 -9 287 243 146 29 chr1 13444939 13445042 -229219311 - L2 LINE L2 0 3272 3158 234 304 76 0 chr1 13445206 13445298 -229219055 + L2 LINE L2 3178 3276 -37 739 274 179 43 chr1 13445300 13445449 -229218904 - L2 LINE L2 0 3313 3186 1747 159 0 35 chr1 13445449 13445763 -229218590 + AluJb SINE Alu 1 303 -9 739 274 179 43 chr1 13445763 13446033 -229218320 - L2 LINE L2 -127 3186 2837 968 266 103 18 chr1 13446056 13446443 -229217910 + MLT1D LTR MaLR 1 420 -85 1729 151 41 0 chr1 13446472 13446763 -229217590 + AluJb SINE Alu 9 311 -1 894 252 34 51 chr1 13446795 13447040 -229217313 - LTR43 LTR ERV1 -123 479 237 2046 108 0 11 chr1 13447040 13447406 -229216947 + AluSx SINE Alu 1 363 0 894 252 34 51 chr1 13447406 13447453 -229216900 - LTR43 LTR ERV1 -365 237 191 2214 111 3 9 chr1 13447453 13447768 -229216585 + AluSq SINE Alu 1 313 0 236 139 23 0 chr1 13447771 13447814 -229216539 - LTR43 LTR ERV1 -368 234 191 2292 100 3 0 chr1 13447814 13448124 -229216229 + AluSx SINE Alu 1 311 -1 413 214 15 20 chr1 13448317 13448424 -229215929 + MLT1B LTR MaLR 224 352 -38 408 303 40 15 chr1 13448431 13448629 -229215724 - L2 LINE L2 -518 2796 2594 426 304 130 6 chr1 13448851 13449012 -229215341 - MIR SINE MIR -31 231 51 2009 107 20 20 chr1 13449019 13449319 -229215034 + AluSx SINE Alu 1 300 -12 183 263 18 0 chr1 13449400 13449457 -229214896 - MIR SINE MIR -158 104 47 246 105 0 0 chr1 13450386 13450424 -229213929 + (CA)n Simple_repeat Simple_repeat 2 39 0 1560 138 93 11 chr1 13450521 13450790 -229213563 - AluSx SINE Alu -21 291 1 2134 107 21 34 chr1 13451166 13451319 -229213034 + L1PB1 LINE L1 5821 5974 -177 2259 68 0 10 chr1 13451319 13451613 -229212740 + AluY SINE Alu 1 291 -20 2134 107 21 34 chr1 13451613 13451786 -229212567 + L1PB1 LINE L1 5974 6143 -8 33 0 0 0 chr1 13451786 13451819 -229212534 + AT_rich Low_complexity Low_complexity 1 33 0 231 252 122 27 chr1 13452038 13452185 -229212168 + MIR3 SINE MIR 29 189 -19 198 71 0 0 chr1 13452616 13452644 -229211709 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 374 147 78 52 chr1 13452926 13453042 -229211311 + L1ME4a LINE L1 5997 6115 -6 250 316 101 29 chr1 13453080 13453289 -229211064 + L3b LINE CR1 1229 1452 -131 394 233 47 62 chr1 13453337 13453466 -229210887 - MIR3 SINE MIR -24 184 58 2246 98 10 3 chr1 13453590 13453896 -229210457 - AluSx SINE Alu -2 310 3 520 276 105 44 chr1 13454714 13454942 -229209411 - MIR SINE MIR -1 261 20 2361 184 28 61 chr1 13455162 13455274 -229209079 + MLT2B1 LTR ERVL 1 115 -405 2121 108 3 3 chr1 13455274 13455569 -229208784 - AluSx SINE Alu -17 295 1 2361 184 28 61 chr1 13455569 13455994 -229208359 + MLT2B1 LTR ERVL 115 520 0 2783 3 0 0 chr1 13456864 13457171 -229207182 - AluYa5 SINE Alu -4 307 1 339 278 94 67 chr1 13457270 13457373 -229206980 - MER5A DNA MER1_type -4 185 72 1390 178 31 52 chr1 13457373 13457689 -229206664 - AluJb SINE Alu 0 310 1 339 278 94 67 chr1 13457689 13457764 -229206589 - MER5A DNA MER1_type -117 72 1 193 310 35 11 chr1 13458112 13458199 -229206154 - MIR SINE MIR -12 250 162 2269 102 0 3 chr1 13458443 13458757 -229205596 + AluSq SINE Alu 1 313 0 388 273 72 7 chr1 13459252 13459391 -229204962 + MIR3 SINE MIR 46 193 -15 214 264 19 0 chr1 13460139 13460192 -229204161 - MIR SINE MIR -112 150 97 279 0 0 0 chr1 13460343 13460374 -229203979 + (CA)n Simple_repeat Simple_repeat 2 32 0 1682 171 14 3 chr1 13461241 13461534 -229202819 + AluJo SINE Alu 1 296 -16 589 311 6 0 chr1 13462366 13462533 -229201820 + MIR SINE MIR 95 262 0 574 72 0 36 chr1 13463163 13463246 -229201107 + MADE1 DNA Mariner 1 80 0 556 268 77 0 chr1 13463912 13464080 -229200273 + MIR SINE MIR 48 228 -34 351 232 30 39 chr1 13464268 13464403 -229199950 + MIR SINE MIR 46 178 -68 655 306 50 0 chr1 13464696 13464895 -229199458 + MIR SINE MIR 54 262 0 189 283 61 71 chr1 13464847 13464946 -229199407 - MIR SINE MIR -48 214 117 * 234 91 0 0 chr1 13466177 13466210 -229198143 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 182 250 42 0 chr1 13466291 13466339 -229198014 + MIR SINE MIR 71 120 -142 673 296 27 11 chr1 13466499 13466685 -229197668 - MIR3 SINE MIR -15 193 5 877 277 105 15 chr1 13467309 13467634 -229196719 + MLT1K LTR MaLR 7 360 -228 232 206 0 63 chr1 13467677 13467740 -229196613 + MLT1K LTR MaLR 439 497 -91 289 261 169 39 chr1 13468832 13468962 -229195391 - L2 LINE L2 -3 3269 3123 201 182 0 45 chr1 13468981 13469025 -229195328 + L2 LINE L2 3267 3308 -5 635 151 76 17 chr1 13469457 13469576 -229194777 + FLAM_C SINE Alu 5 130 -3 387 248 50 0 chr1 13469637 13469738 -229194615 + MER5A DNA MER1_type 4 109 -80 2227 97 0 10 chr1 13469741 13469776 -229194577 - AluSp SINE Alu 0 313 279 1108 98 0 22 chr1 13469776 13469960 -229194393 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2227 97 0 10 chr1 13469960 13470248 -229194105 - AluSp SINE Alu -34 279 1 699 188 91 12 chr1 13470274 13470439 -229193914 - MER5B DNA MER1_type 0 178 1 227 232 37 61 chr1 13470469 13470551 -229193802 - MIR SINE MIR -66 196 117 883 215 10 41 chr1 13470579 13470666 -229193687 + MER5A DNA MER1_type 1 89 -100 1662 179 21 3 chr1 13470666 13470957 -229193396 + AluJb SINE Alu 12 307 -5 883 215 10 41 chr1 13470957 13471064 -229193289 + MER5A DNA MER1_type 89 189 0 411 144 198 18 chr1 13471071 13471182 -229193171 + MIR SINE MIR 19 149 -59 264 288 0 0 chr1 13471223 13471303 -229193050 - MER117 DNA MER1_type -49 148 69 304 337 131 31 chr1 13471305 13471596 -229192757 + L2 LINE L2 2948 3267 -5 1997 115 0 7 chr1 13471941 13472227 -229192126 + AluSx SINE Alu 17 300 -12 200 267 67 17 chr1 13472785 13472845 -229191508 - L2 LINE L2 -24 3289 3227 233 321 0 48 chr1 13472994 13473078 -229191275 - MIR SINE MIR -83 125 46 238 304 196 9 chr1 13473691 13473803 -229190550 - MIR SINE MIR -109 153 21 285 304 96 0 chr1 13473877 13474002 -229190351 - MIR3 SINE MIR -71 137 1 798 261 9 32 chr1 13474263 13474481 -229189872 + MIR SINE MIR 40 252 -10 271 325 97 69 chr1 13474475 13474711 -229189642 - L2 LINE L2 0 3272 3017 * 2229 103 3 0 chr1 13474711 13475012 -229189341 - AluSx SINE Alu -10 302 1 271 325 97 69 chr1 13475012 13475197 -229189156 - L2 LINE L2 -255 3017 2839 1378 241 67 14 chr1 13475221 13475656 -229188697 + MLT1C LTR MaLR 5 462 -5 1184 180 113 158 chr1 13476516 13476828 -229187525 - MLT1C LTR MaLR 0 467 99 1879 104 4 12 chr1 13476828 13477087 -229187266 - AluSx SINE Alu -55 257 1 1184 180 113 158 chr1 13477087 13477180 -229187173 - MLT1C LTR MaLR -368 99 3 497 301 119 0 chr1 13477182 13477375 -229186978 - MIR SINE MIR -3 259 44 250 220 17 0 chr1 13477576 13477635 -229186718 - MIR SINE MIR -64 144 85 295 331 48 0 chr1 13477804 13477928 -229186425 + MIR3 SINE MIR 33 162 -46 224 281 62 41 chr1 13478009 13478155 -229186198 + L2 LINE L2 2851 2999 -273 * 480 317 82 0 chr1 13478150 13478333 -229186020 + MIR SINE MIR 59 256 -6 461 289 116 12 chr1 13479606 13479779 -229184574 + MIR SINE MIR 2 192 -70 1539 217 60 54 chr1 13479823 13480307 -229184046 + MLT1D LTR MaLR 9 495 -10 516 299 36 36 chr1 13480367 13480561 -229183792 + MIR3 SINE MIR 14 207 -1 255 261 78 0 chr1 13481656 13481757 -229182596 - MIR SINE MIR -62 146 31 357 243 63 17 chr1 13481931 13482056 -229182297 + MIR SINE MIR 27 146 -62 366 276 173 27 chr1 13483210 13483395 -229180958 - MIR SINE MIR -37 225 14 2249 103 6 0 chr1 13483468 13483779 -229180574 - AluSq SINE Alu 0 313 1 189 0 0 0 chr1 13483821 13483842 -229180511 + (CCCCAG)n Simple_repeat Simple_repeat 1 21 0 227 303 15 0 chr1 13483986 13484052 -229180301 + MIR SINE MIR 81 147 -61 448 156 11 33 chr1 13534160 13534250 -229130103 + LTR26 LTR ERV1 514 601 -2 2285 128 0 0 chr1 13534339 13534644 -229129709 + AluSx SINE Alu 1 305 -7 2440 95 0 0 chr1 13534841 13535145 -229129208 + AluSx SINE Alu 1 304 -8 889 125 0 0 chr1 13535231 13535351 -229129002 + AluSg/x SINE Alu 169 288 -22 291 28 0 0 chr1 13535359 13535395 -229128958 + (TA)n Simple_repeat Simple_repeat 1 36 0 1585 131 62 39 chr1 13535396 13535655 -229128698 - AluJb SINE Alu -18 294 30 189 74 0 0 chr1 13535685 13535712 -229128641 + (CAA)n Simple_repeat Simple_repeat 2 28 0 222 37 0 0 chr1 13535755 13535782 -229128571 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 874 129 0 0 chr1 13535782 13535898 -229128455 - FLAM_C SINE Alu -27 116 1 363 275 73 118 chr1 13536036 13536183 -229128170 - L1ME4a LINE L1 -150 5971 5819 1766 162 17 10 chr1 13536183 13536485 -229127868 - AluJo SINE Alu -8 304 1 363 275 73 118 chr1 13536485 13536535 -229127818 - L1ME4a LINE L1 -302 5819 5768 2241 97 0 29 chr1 13536535 13536845 -229127508 - AluSg SINE Alu -5 305 5 363 275 73 118 chr1 13536845 13536933 -229127420 - L1ME4a LINE L1 -353 5768 5698 704 106 106 32 chr1 13536967 13537090 -229127263 - FLAM_C SINE Alu 0 133 2 2006 92 9 66 chr1 13537092 13537110 -229127243 - AluSx SINE Alu -13 299 282 399 41 0 0 chr1 13537110 13537159 -229127194 + (TG)n Simple_repeat Simple_repeat 2 50 0 2006 92 9 66 chr1 13537159 13537457 -229126896 - AluSx SINE Alu -30 282 1 2094 45 8 34 chr1 13539158 13539425 -229124928 - AluY SINE Alu -14 297 38 1284 155 79 54 chr1 13539486 13539554 -229124799 + MER33 DNA MER1_type 1 66 -2519 2416 93 0 7 chr1 13539554 13539855 -229124498 + AluSx SINE Alu 1 299 -13 1284 155 79 54 chr1 13539855 13540078 -229124275 + MER33 DNA MER1_type 66 303 -2282 2319 111 3 0 chr1 13540078 13540385 -229123968 - AluSq SINE Alu -5 308 1 1284 155 79 54 chr1 13540385 13540408 -229123945 + MER33 DNA MER1_type 303 324 0 180 111 0 0 chr1 13540523 13540550 -229123803 + (TAG)n Simple_repeat Simple_repeat 1 27 0 567 191 30 23 chr1 13540550 13540681 -229123672 - MIR SINE MIR -8 254 123 1364 138 167 0 chr1 13540714 13540953 -229123400 - AluSx SINE Alu -1 311 33 182 322 17 0 chr1 13540970 13541029 -229123324 - MIR SINE MIR -201 61 2 256 234 36 135 chr1 13541759 13541870 -229122483 + L2 LINE L2 3208 3307 -6 235 287 161 0 chr1 13542323 13542410 -229121943 - MIR SINE MIR -66 142 42 2281 102 10 0 chr1 13542524 13542818 -229121535 - AluSq SINE Alu -16 297 1 2295 89 0 80 chr1 13543054 13543392 -229120961 - AluSx SINE Alu -1 311 1 311 222 107 107 chr1 13543949 13544093 -229120260 + MIR SINE MIR 14 155 -64 356 336 26 9 chr1 13544112 13544228 -229120125 - L2 LINE L2 -2 3311 3194 2300 98 20 7 chr1 13544780 13545077 -229119276 - AluSx SINE Alu -11 301 1 273 169 51 0 chr1 13545172 13545231 -229119122 - HsTC2 DNA Tc2 -44 1854 1793 2358 117 0 0 chr1 13545236 13545543 -229118810 - AluSc SINE Alu -2 307 1 2066 132 4 0 chr1 13545596 13545877 -229118476 + AluJo SINE Alu 15 296 -16 262 226 0 0 chr1 13545886 13545939 -229118414 - HsTC2 DNA Tc2 -1843 55 3 519 248 102 13 chr1 13546042 13546201 -229118152 + MIR SINE MIR 19 188 -62 2320 116 0 0 chr1 13546206 13546500 -229117853 + AluSx SINE Alu 1 294 -18 677 307 153 9 chr1 13546855 13547380 -229116973 - L2 LINE L2 -75 3238 2625 803 261 185 8 chr1 13547404 13547760 -229116593 - LTR16B LTR ERVL -43 421 3 451 248 80 7 chr1 13547763 13547900 -229116453 - L2 LINE L2 -687 2627 2481 227 256 137 11 chr1 13547968 13548135 -229116218 + MIR SINE MIR 5 185 -77 277 277 31 0 chr1 13548144 13548209 -229116144 - MER2 DNA MER2_type -2 343 277 819 150 0 16 chr1 13548209 13548336 -229116017 + AluJb SINE Alu 1 125 -187 1142 154 14 5 chr1 13548408 13548616 -229115737 - MER2 DNA MER2_type -134 211 2 228 345 0 0 chr1 13548616 13548671 -229115682 + MIR SINE MIR 196 250 -12 210 292 56 11 chr1 13548731 13548820 -229115533 + MIR SINE MIR 111 203 -59 839 120 38 38 chr1 13548854 13548987 -229115366 + FLAM_C SINE Alu 1 133 0 2897 228 153 39 chr1 13549030 13550280 -229114073 - L2 LINE L2 -1 3312 1896 6562 53 17 44 chr1 13550280 13551238 -229113115 + SVA Other Other 464 1396 0 2129 102 0 4 chr1 13551428 13551702 -229112651 - AluSg SINE Alu -37 273 1 2249 109 7 3 chr1 13551814 13552116 -229112237 - AluSq SINE Alu -10 303 1 443 312 156 0 chr1 13553548 13553747 -229110606 + MIR SINE MIR 32 261 -1 1789 156 0 36 chr1 13554728 13555029 -229109324 - AluJo SINE Alu -22 290 1 2135 137 23 6 chr1 13555641 13555983 -229108370 - MER7A DNA MER2_type 0 346 1 2163 95 11 3 chr1 13555986 13556295 -229108058 - AluSx SINE Alu 0 311 1 2240 109 3 10 chr1 13556329 13556632 -229107721 - AluSp SINE Alu -9 304 4 711 191 66 0 chr1 13556632 13556768 -229107585 - FRAM SINE Alu -31 145 1 1917 129 26 23 chr1 13556934 13557236 -229107117 - AluJo SINE Alu -9 303 1 188 357 122 0 chr1 13557850 13557948 -229106405 + MIR3 SINE MIR 13 122 -86 1150 74 0 20 chr1 13558105 13558117 -229106236 - AluSq/x SINE Alu -168 145 134 2062 141 0 6 chr1 13558117 13558429 -229105924 - AluSx SINE Alu -2 310 1 1150 74 0 20 chr1 13558429 13558564 -229105789 - AluSq/x SINE Alu -179 134 1 794 233 39 17 chr1 13558687 13558867 -229105486 - MER91B DNA MER1_type -6 184 1 548 296 53 51 chr1 13559194 13559304 -229105049 + MIR SINE MIR 10 118 -144 2501 63 3 0 chr1 13559304 13559605 -229104748 - AluY SINE Alu -9 302 1 548 296 53 51 chr1 13559605 13559742 -229104611 + MIR SINE MIR 118 262 0 271 289 10 31 chr1 13559755 13559852 -229104501 + MIR SINE MIR 91 185 -77 2370 107 7 0 chr1 13560713 13561023 -229103330 - AluSx SINE Alu 0 312 1 21 36 0 0 chr1 13561422 13561450 -229102903 + AT_rich Low_complexity Low_complexity 1 28 0 2405 68 0 39 chr1 13561572 13561882 -229102471 + AluY SINE Alu 1 298 -13 2276 86 3 10 chr1 13563835 13564136 -229100217 + AluSx SINE Alu 1 299 -13 1997 157 3 10 chr1 13564207 13564519 -229099834 + AluJb SINE Alu 1 310 -2 384 224 47 0 chr1 13564549 13564634 -229099719 - L2 LINE L2 -1 3271 3183 2393 87 0 0 chr1 13564646 13564944 -229099409 - AluSc SINE Alu -11 298 1 930 216 0 0 chr1 13565148 13565315 -229099038 - AluSg/x SINE Alu -16 296 130 2123 123 17 0 chr1 13567751 13568053 -229096300 - AluSx SINE Alu -5 307 1 500 184 9 44 chr1 13568245 13568359 -229095994 + L2 LINE L2 3203 3312 -1 1440 196 57 4 chr1 13568630 13568910 -229095443 + AluJo SINE Alu 3 297 -15 1819 147 59 7 chr1 13570219 13570505 -229093848 - AluSx SINE Alu -9 303 3 436 155 12 0 chr1 13570553 13570637 -229093716 + L1MA6 LINE L1 6000 6084 -216 1047 144 69 0 chr1 13570667 13570827 -229093526 - AluJb SINE Alu -17 295 125 2288 110 0 0 chr1 13572157 13572447 -229091906 + AluSx SINE Alu 1 290 -22 1249 287 33 16 chr1 13572543 13572971 -229091382 - L1MC4 LINE L1 -518 7524 7090 247 311 36 60 chr1 13573011 13573178 -229091175 - L1MC4a LINE L1 -1368 6440 6278 2408 113 0 0 chr1 13573319 13573630 -229090723 - AluSx SINE Alu -1 311 1 222 37 0 0 chr1 13573705 13573732 -229090621 + (CGGGGG)n Simple_repeat Simple_repeat 4 30 0 1518 161 63 35 chr1 13573851 13574137 -229090216 - AluJb SINE Alu -18 294 1 419 244 102 84 chr1 13574138 13574285 -229090068 - L1MEd LINE L1 -2016 4199 4056 708 159 0 0 chr1 13574285 13574392 -229089961 - U6 snRNA snRNA 0 107 1 419 244 102 84 chr1 13574392 13574683 -229089670 - L1MEd LINE L1 -2159 4056 3753 285 254 182 47 chr1 13574697 13574924 -229089429 - L1MEd LINE L1 -2681 3534 3262 2304 123 0 0 chr1 13574924 13575226 -229089127 + AluSx SINE Alu 1 302 -10 285 254 182 47 chr1 13575226 13575273 -229089080 - L1MEd LINE L1 -2953 3262 3223 234 217 87 0 chr1 13575311 13575380 -229088973 - L1MEd LINE L1 -3108 3107 3033 1379 201 64 17 chr1 13575418 13575784 -229088569 - L1MB7 LINE L1 -2 6182 5801 1233 273 93 34 chr1 13575785 13576559 -229087794 - L1MEd LINE L1 -3187 3028 2235 2103 117 7 0 chr1 13576559 13576888 -229087465 - AluSq SINE Alu 0 331 1 1233 273 93 34 chr1 13576888 13577000 -229087353 - L1MEd LINE L1 -3980 2235 2131 723 236 151 75 chr1 13577061 13577763 -229086590 - L1MC5 LINE L1 -53 7908 7244 309 232 4 36 chr1 13577760 13577882 -229086471 - L1MC4a LINE L1 -632 7234 7075 * 307 143 0 20 chr1 13577899 13577948 -229086405 - MER4E LTR ERV1 -74 692 645 611 162 63 27 chr1 13578015 13578126 -229086227 + FLAM_C SINE Alu 2 116 -27 21 26 0 26 chr1 13578126 13578149 -229086204 + AT_rich Low_complexity Low_complexity 1 24 -14 2458 71 0 3 chr1 13578149 13578445 -229085908 + AluY SINE Alu 1 295 -16 21 26 0 26 chr1 13578445 13578460 -229085893 + AT_rich Low_complexity Low_complexity 24 38 0 420 268 6 57 chr1 13578460 13578617 -229085736 - L1MC5 LINE L1 -837 7124 6976 234 62 167 0 chr1 13578656 13578704 -229085649 + L1MC4a LINE L1 6565 6620 -1188 301 74 19 19 chr1 13578895 13578949 -229085404 + (TA)n Simple_repeat Simple_repeat 1 54 0 469 250 93 7 chr1 13579007 13579147 -229085206 - L1MC5 LINE L1 -1090 6871 6720 2213 128 0 0 chr1 13579351 13579647 -229084706 + AluSx SINE Alu 1 296 -16 1191 133 31 10 chr1 13579770 13579966 -229084387 - MLT1D LTR MaLR -2 503 304 34 0 0 0 chr1 13580242 13580276 -229084077 + AT_rich Low_complexity Low_complexity 1 34 0 315 253 37 36 chr1 13580376 13580584 -229083769 - L1MEd LINE L1 -4862 1343 1223 * 1220 283 83 26 chr1 13580555 13580585 -229083768 - L1MEd LINE L1 -5232 973 946 1936 154 6 31 chr1 13580585 13580904 -229083449 - AluSx SINE Alu -1 311 1 1220 283 83 26 chr1 13580904 13581403 -229082950 - L1MEd LINE L1 -5259 946 414 1843 171 3 23 chr1 13581416 13581720 -229082633 - AluJb SINE Alu -14 298 1 2402 92 0 0 chr1 13582203 13582496 -229081857 - AluSg SINE Alu -17 293 1 2249 64 0 64 chr1 13582935 13583249 -229081104 + AluY SINE Alu 1 294 -17 485 232 58 7 chr1 13583716 13583871 -229080482 - MIR SINE MIR 0 262 100 1481 140 37 37 chr1 13583974 13584245 -229080108 - AluJo SINE Alu -12 300 30 328 297 55 36 chr1 13586733 13586952 -229077401 - L2 LINE L2 -213 3059 2837 696 263 214 30 chr1 13588465 13588895 -229075458 - L2 LINE L2 -1 3312 2804 782 214 33 28 chr1 13588902 13588979 -229075374 + MER5A DNA MER1_type 6 81 -108 1632 187 7 11 chr1 13588979 13589263 -229075090 + AluJo SINE Alu 1 283 -29 782 214 33 28 chr1 13589263 13589367 -229074986 + MER5A DNA MER1_type 81 188 -1 817 260 72 8 chr1 13589368 13589618 -229074735 - L2 LINE L2 -514 2800 2535 1305 192 12 16 chr1 13589959 13590209 -229074144 - MER58B DNA MER1_type -50 291 43 1545 144 113 4 chr1 13590211 13590468 -229073885 + AluJb SINE Alu 1 285 -27 2149 128 0 0 chr1 13590478 13590767 -229073586 + AluSx SINE Alu 1 289 -23 431 136 9 0 chr1 13591754 13591840 -229072513 - MER5A DNA MER1_type -97 92 6 740 204 7 0 chr1 13592850 13592992 -229071361 + FLAM_C SINE Alu 1 143 0 1238 131 4 97 chr1 13592999 13593236 -229071117 + AluJo SINE Alu 86 300 -12 1906 160 3 10 chr1 13593245 13593551 -229070802 + AluJb SINE Alu 1 304 -8 1004 242 43 19 chr1 13594054 13594310 -229070043 - MIR SINE MIR 0 262 1 302 202 46 92 chr1 13594987 13595096 -229069257 - MIR SINE MIR -128 134 31 746 233 85 5 chr1 13595108 13595331 -229069022 - MIR SINE MIR -21 241 1 2075 210 78 45 chr1 13596396 13596957 -229067396 - MLT1G1 LTR MaLR -13 582 3 1906 131 25 0 chr1 13596960 13597242 -229067111 - AluSx SINE Alu -12 300 12 680 130 36 29 chr1 13597252 13597390 -229066963 - L1MA4 LINE L1 -3 6297 6159 2389 99 0 0 chr1 13597403 13597715 -229066638 - AluSx SINE Alu 0 312 1 1789 149 35 3 chr1 13597718 13598007 -229066346 - AluJb SINE Alu -6 306 9 22 0 0 0 chr1 13598008 13598030 -229066323 + AT_rich Low_complexity Low_complexity 1 22 0 933 113 7 21 chr1 13598030 13598172 -229066181 - L1PB4 LINE L1 -7 6149 6010 2206 105 27 0 chr1 13598204 13598498 -229065855 - AluY SINE Alu -9 302 1 1681 191 7 3 chr1 13598540 13598828 -229065525 + AluJo SINE Alu 1 289 -23 280 231 143 14 chr1 13598923 13599070 -229065283 + L1ME4a LINE L1 5956 6121 0 503 221 9 9 chr1 13599467 13599580 -229064773 - FLAM_A SINE Alu -11 131 19 2472 77 0 0 chr1 13599615 13599912 -229064441 - AluY SINE Alu -14 297 1 245 211 19 0 chr1 13600650 13600661 -229063692 + MER3 DNA MER1_type 36 47 -162 607 173 181 0 chr1 13600661 13600794 -229063559 - MER3 DNA MER1_type 0 209 53 2147 121 7 3 chr1 13602803 13603093 -229061260 + AluSx SINE Alu 1 291 -21 213 39 0 0 chr1 13603094 13603120 -229061233 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2368 98 3 0 chr1 13603767 13604073 -229060280 - AluSc SINE Alu -2 307 1 285 284 53 11 chr1 13606721 13606816 -229057537 - MER91B DNA MER1_type -55 135 37 1868 124 31 21 chr1 13607322 13607613 -229056740 - AluSq SINE Alu -17 296 3 2059 116 43 13 chr1 13607871 13608172 -229056181 - AluSx SINE Alu -2 310 1 549 286 40 27 chr1 13612653 13612877 -229051476 - LTR16A1 LTR ERVL -229 228 2 1080 331 28 46 chr1 13613026 13613676 -229050677 - HERV16 LTR ERVL -398 5366 4729 1243 305 26 22 chr1 13613757 13614365 -229049988 - HERV16 LTR ERVL -2310 3344 2712 1832 139 36 0 chr1 13614391 13614665 -229049688 + AluJo SINE Alu 1 284 -28 1226 133 11 0 chr1 13614734 13614914 -229049439 - MER20 DNA MER1_type -1 218 37 1536 296 39 69 chr1 13614914 13615194 -229049159 - HERV16 LTR ERVL -2304 2692 2405 2285 128 0 0 chr1 13615194 13615506 -229048847 + AluSx SINE Alu 1 312 0 1536 296 39 69 chr1 13615506 13615977 -229048376 - HERV16 LTR ERVL -2591 2405 1964 2509 73 0 0 chr1 13615994 13616294 -229048059 - AluY SINE Alu -11 300 1 1165 61 0 0 chr1 13616297 13616429 -229047924 - AluY SINE Alu -179 132 1 2195 280 69 14 chr1 13616454 13616726 -229047627 - HERV16 LTR ERVL -3053 1943 1687 2230 103 3 0 chr1 13616726 13617016 -229047337 + AluSp SINE Alu 2 292 -21 2195 280 69 14 chr1 13617016 13617430 -229046923 - HERV16 LTR ERVL -3309 1687 1297 1715 130 23 33 chr1 13617430 13617729 -229046624 - AluJb SINE Alu -16 296 1 2195 280 69 14 chr1 13617729 13618052 -229046301 - HERV16 LTR ERVL -3699 1297 832 1362 254 47 30 chr1 13618130 13618536 -229045817 - HERV16 LTR ERVL -4277 719 307 1044 166 0 0 chr1 13618570 13618739 -229045614 - AluJb SINE Alu 0 312 144 304 137 20 0 chr1 13618739 13618790 -229045563 - MER20 DNA MER1_type -14 205 154 2107 119 0 3 chr1 13618794 13619096 -229045257 - AluSx SINE Alu -9 303 3 1089 73 0 0 chr1 13619097 13619233 -229045120 - AluSq/x SINE Alu -176 136 1 476 168 9 75 chr1 13619233 13619340 -229045013 - MER20 DNA MER1_type -71 148 49 766 172 0 16 chr1 13619385 13619513 -229044840 - FLAM_C SINE Alu -7 126 1 428 318 99 0 chr1 13619513 13619705 -229044648 - HERV16 LTR ERVL -4707 289 79 493 297 16 0 chr1 13619811 13619939 -229044414 - LTR16A LTR ERVL -92 358 229 644 212 32 0 chr1 13619947 13620102 -229044251 - MIR SINE MIR -62 146 35 1454 205 13 3 chr1 13620117 13620415 -229043938 + AluJo SINE Alu 1 301 -11 996 206 83 29 chr1 13620436 13620713 -229043640 - MLT1J2 LTR MaLR -155 295 4 374 250 52 0 chr1 13621285 13621401 -229042952 - MER103 DNA DNA -32 134 13 2344 84 13 0 chr1 13621443 13621751 -229042602 + AluSx SINE Alu 1 312 0 459 322 35 0 chr1 13622470 13622641 -229041712 + MIR SINE MIR 35 211 -51 2144 113 3 0 chr1 13622647 13622948 -229041405 + AluSg SINE Alu 1 302 -8 500 64 81 27 chr1 13623502 13623757 -229040596 + (CACAC)n Simple_repeat Simple_repeat 1 268 0 578 24 97 18 chr1 13623795 13623960 -229040393 + (CA)n Simple_repeat Simple_repeat 2 179 0 693 130 42 14 chr1 13623978 13624423 -229039930 + (CA)n Simple_repeat Simple_repeat 1 457 0 195 255 149 0 chr1 13625124 13625218 -229039135 + MIR SINE MIR 44 151 -111 1240 114 0 6 chr1 13625431 13625607 -229038746 + AluSc SINE Alu 125 299 -10 1845 141 3 13 chr1 13625703 13626007 -229038346 + AluJb SINE Alu 2 302 -10 2247 112 0 0 chr1 13626009 13626321 -229038032 + AluSx SINE Alu 1 312 0 253 241 11 58 chr1 13626845 13626932 -229037421 - MIR SINE MIR -61 147 65 1115 141 11 0 chr1 13626958 13627135 -229037218 + L1MB4 LINE L1 6000 6178 -2 2311 57 0 0 chr1 13627142 13627459 -229036894 + AluY SINE Alu 1 317 0 324 296 47 30 chr1 13628247 13628416 -229035937 - L2 LINE L2 -62 3251 3080 782 211 6 12 chr1 13628516 13628677 -229035676 + MIR SINE MIR 17 176 -86 2347 80 0 0 chr1 13628693 13628992 -229035361 - AluSq SINE Alu -14 299 1 269 227 0 30 chr1 13629261 13629327 -229035026 - MLT1I LTR MaLR -265 144 81 1249 209 50 9 chr1 13629329 13629696 -229034657 - MLT1B LTR MaLR 0 390 46 192 40 0 0 chr1 13629777 13629802 -229034551 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1729 147 7 36 chr1 13629804 13630110 -229034243 - AluSx SINE Alu -15 297 1 437 218 20 0 chr1 13630216 13630317 -229034036 + L1MA10 LINE L1 6225 6327 -7 1029 184 84 27 chr1 13630390 13630651 -229033702 + L1MD3 LINE L1 7707 7982 -13 711 197 182 23 chr1 13630900 13631068 -229033285 + MER33 DNA MER1_type 17 157 -2428 1677 173 14 0 chr1 13631068 13631357 -229032996 + AluSx SINE Alu 1 293 -19 711 197 182 23 chr1 13631357 13631452 -229032901 + MER33 DNA MER1_type 157 322 -2 355 136 15 15 chr1 13631977 13632043 -229032310 - MLT1K LTR MaLR -327 261 196 278 233 29 68 chr1 13632360 13632463 -229031890 - MLT1K LTR MaLR -178 212 114 186 43 0 0 chr1 13632464 13632487 -229031866 + (T)n Simple_repeat Simple_repeat 1 23 0 1968 132 0 0 chr1 13632512 13632792 -229031561 - AluSx SINE Alu -32 280 1 2415 131 34 3 chr1 13632846 13633229 -229031124 - MSTA LTR MaLR 0 428 34 2228 84 7 10 chr1 13633230 13633528 -229030825 - AluSx SINE Alu -15 297 1 376 324 25 34 chr1 13634142 13634346 -229030007 + LTR16C LTR ERVL 288 489 -2 2281 108 0 0 chr1 13634425 13634732 -229029621 + AluSx SINE Alu 1 307 -5 183 220 0 0 chr1 13634941 13634991 -229029362 + CT-rich Low_complexity Low_complexity 1 50 0 248 219 29 139 chr1 13635344 13635395 -229028958 + MLT1I LTR MaLR 99 154 -255 2053 108 3 26 chr1 13635395 13635700 -229028653 + AluSx SINE Alu 1 298 -14 248 219 29 139 chr1 13635700 13635785 -229028568 + MLT1I LTR MaLR 154 220 -189 2181 113 0 0 chr1 13636247 13636547 -229027806 + AluSq SINE Alu 1 300 -13 182 309 0 0 chr1 13636724 13636779 -229027574 - MIR SINE MIR -69 139 85 4192 85 13 9 chr1 13637225 13637777 -229026576 + MER41A LTR ERV1 1 554 0 424 279 25 126 chr1 13637960 13638286 -229026067 + L2 LINE L2 2971 3263 -9 2141 119 0 0 chr1 13639217 13639512 -229024841 - AluSx SINE Alu -17 295 1 379 333 62 37 chr1 13639514 13639757 -229024596 - MIR SINE MIR -4 258 10 214 317 50 0 chr1 13639802 13639862 -229024491 + MIR SINE MIR 110 172 -90 2048 107 0 28 chr1 13640640 13640957 -229023396 + AluSx SINE Alu 1 309 0 2300 81 0 34 chr1 13641103 13641424 -229022929 + AluSx SINE Alu 3 312 0 1801 116 56 0 chr1 13643519 13643810 -229020543 + AluSx SINE Alu 1 306 0 416 321 79 5 chr1 13643822 13644012 -229020341 - MLT1L LTR MaLR -2 613 410 1893 151 17 3 chr1 13644119 13644417 -229019936 + AluSx SINE Alu 7 308 -4 268 296 10 0 chr1 13644420 13644518 -229019835 - MLT1L LTR MaLR -349 266 168 722 329 94 16 chr1 13644626 13645006 -229019347 - LTR16A1 LTR ERVL 0 481 82 2264 92 0 0 chr1 13645031 13645326 -229019027 + AluSx SINE Alu 1 295 -17 473 259 38 8 chr1 13645416 13645547 -229018806 + L2 LINE L2 3138 3272 0 302 281 27 82 chr1 13645922 13646068 -229018285 - MIR SINE MIR -46 216 79 660 257 79 1 chr1 13646274 13646618 -229017735 + MLT1I LTR MaLR 6 407 -2 1697 150 0 83 chr1 13646651 13646990 -229017363 + AluSx SINE Alu 1 311 -1 2133 120 10 0 chr1 13648115 13648424 -229015929 - AluSx SINE Alu 0 312 1 2528 167 68 107 chr1 13648703 13649214 -229015139 + L1MD2 LINE L1 5703 6233 -126 315 0 0 0 chr1 13649214 13649249 -229015104 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1611 159 26 4 chr1 13649250 13649520 -229014833 - AluJb SINE Alu -35 277 2 2528 167 68 107 chr1 13649520 13649687 -229014666 + L1MD2 LINE L1 6232 6356 -3 1927 161 3 0 chr1 13649931 13650241 -229014112 + AluSx SINE Alu 1 311 -1 761 176 14 9 chr1 13650241 13650463 -229013890 + GA-rich Low_complexity Low_complexity 1 223 0 187 196 22 22 chr1 13650494 13650540 -229013813 + MIR SINE MIR 63 108 -154 1901 82 0 4 chr1 13650913 13651177 -229013176 + AluSg SINE Alu 38 300 0 1840 144 31 0 chr1 13652064 13652356 -229011997 + AluSx SINE Alu 1 301 -11 269 322 62 62 chr1 13652679 13652856 -229011497 + L2 LINE L2 2914 3090 -182 767 230 0 17 chr1 13652997 13653175 -229011178 + MIR SINE MIR 50 224 -38 535 209 107 19 chr1 13653197 13653450 -229010903 + MER46C DNA MER2_type 4 317 -21 186 274 145 0 chr1 13653507 13653569 -229010784 + L2 LINE L2 3156 3226 -46 1868 136 3 23 chr1 13654005 13654307 -229010046 + AluSx SINE Alu 1 296 -16 203 206 0 63 chr1 13654656 13654719 -229009634 - MIR SINE MIR -118 144 86 194 152 0 22 chr1 13654901 13654947 -229009406 + CT-rich Low_complexity Low_complexity 5 49 0 450 106 0 0 chr1 13655463 13655529 -229008824 + MER117 DNA MER1_type 79 144 -53 931 290 97 35 chr1 13656108 13656331 -229008022 + L2 LINE L2 2852 3060 -253 1578 163 32 25 chr1 13656331 13656614 -229007739 - AluJb SINE Alu -22 290 6 931 290 97 35 chr1 13656614 13656825 -229007528 + L2 LINE L2 3060 3313 0 211 274 0 0 chr1 13656835 13656886 -229007467 - MIR SINE MIR -121 141 91 2053 116 20 0 chr1 13656899 13657192 -229007161 - AluSx SINE Alu -13 299 1 546 288 113 0 chr1 13657193 13657370 -229006983 - MIR SINE MIR -4 258 62 374 302 86 36 chr1 13657468 13657690 -229006663 - L3b LINE CR1 -55 1528 1296 2116 104 10 0 chr1 13658676 13658975 -229005378 - AluSx SINE Alu -10 302 1 399 247 0 0 chr1 13659256 13659414 -229004939 + (CA)n Simple_repeat Simple_repeat 1 158 0 924 142 13 0 chr1 13659701 13659928 -229004425 + GA-rich Low_complexity Low_complexity 1 230 0 208 265 54 42 chr1 13660325 13660491 -229003862 + (CATATA)n Simple_repeat Simple_repeat 3 170 0 194 91 0 73 chr1 13660523 13660578 -229003775 + (TA)n Simple_repeat Simple_repeat 1 51 0 291 139 0 42 chr1 13660614 13660686 -229003667 + (TAATG)n Simple_repeat Simple_repeat 4 72 0 234 268 43 22 chr1 13660686 13660884 -229003469 + (TATATG)n Simple_repeat Simple_repeat 1 202 0 192 306 0 42 chr1 13661170 13661242 -229003111 - MIR SINE MIR -49 213 145 1396 161 92 22 chr1 13661330 13661627 -229002726 - AluJo SINE Alu 0 312 1 383 326 128 5 chr1 13661976 13662172 -229002181 + MIR SINE MIR 35 254 -8 202 232 0 18 chr1 13663285 13663341 -229001012 + CT-rich Low_complexity Low_complexity 2 56 0 2446 55 0 16 chr1 13663614 13663923 -229000430 - AluY SINE Alu -7 304 1 1062 286 99 40 chr1 13664320 13664831 -228999522 - L2 LINE L2 0 3313 2834 2291 80 3 3 chr1 13664831 13665131 -228999222 - AluSx SINE Alu -10 302 3 1978 144 0 13 chr1 13665133 13665446 -228998907 - AluJb SINE Alu -3 309 1 1062 286 99 40 chr1 13665446 13665511 -228998842 - L2 LINE L2 -479 2834 2774 1696 174 0 10 chr1 13665511 13665821 -228998532 - AluJo SINE Alu -5 307 1 1062 286 99 40 chr1 13665821 13666017 -228998336 - L2 LINE L2 -539 2774 2490 241 280 181 33 chr1 13666520 13666702 -228997651 - L2 LINE L2 -38 3275 3067 316 222 0 0 chr1 13666702 13666774 -228997579 + MIR SINE MIR 169 240 -22 1841 99 24 41 chr1 13666923 13667216 -228997137 - AluSx SINE Alu 0 312 25 184 193 105 18 chr1 13667243 13667300 -228997053 - MIR SINE MIR -131 77 16 2259 90 3 0 chr1 13667833 13668133 -228996220 + AluY SINE Alu 1 301 -10 385 239 97 8 chr1 13668360 13668494 -228995859 - L1MC2 LINE L1 0 6344 6199 2221 94 0 28 chr1 13669658 13669977 -228994376 + AluJb SINE Alu 1 310 -2 231 278 194 9 chr1 13670972 13671080 -228993273 - MIR SINE MIR -132 130 3 1180 69 0 0 chr1 13671114 13671259 -228993094 + AluSx SINE Alu 1 145 -167 1096 117 0 0 chr1 13671321 13671475 -228992878 + AluSx SINE Alu 144 297 -15 201 200 0 0 chr1 13671498 13671533 -228992820 + MIR SINE MIR 65 99 -163 503 273 53 0 chr1 13671574 13671724 -228992629 - MIR SINE MIR -55 207 50 2034 128 0 19 chr1 13672149 13672461 -228991892 - AluSx SINE Alu -6 306 1 454 261 72 20 chr1 13673355 13673508 -228990845 + L2 LINE L2 2923 3083 -189 814 146 0 0 chr1 13673556 13673679 -228990674 - FRAM SINE Alu -5 171 49 215 314 70 0 chr1 13673682 13673768 -228990585 - MIR SINE MIR -59 149 58 1987 111 11 0 chr1 13674429 13674709 -228989644 + AluSx SINE Alu 1 283 -29 2347 81 3 0 chr1 13675080 13675388 -228988965 + AluY SINE Alu 1 309 -2 201 274 14 41 chr1 13676062 13676135 -228988218 + L2 LINE L2 3156 3226 -46 198 0 0 0 chr1 13676162 13676184 -228988169 + (GA)n Simple_repeat Simple_repeat 2 23 0 624 284 89 91 chr1 13676193 13676418 -228987935 + L2 LINE L2 2920 3144 -169 2198 114 0 3 chr1 13676418 13676724 -228987629 - AluSx SINE Alu -7 305 1 1348 177 3 101 chr1 13676724 13677052 -228987301 - AluSx SINE Alu -16 296 1 624 284 89 91 chr1 13677052 13677220 -228987133 + L2 LINE L2 3142 3313 0 363 271 172 0 chr1 13678023 13678145 -228986208 + MIR SINE MIR 99 241 -21 302 295 93 71 chr1 13678565 13678748 -228985605 + MLT1K LTR MaLR 56 242 -346 243 322 0 0 chr1 13678790 13678849 -228985504 + MLT1K LTR MaLR 184 242 -346 213 175 0 0 chr1 13678853 13678893 -228985460 + L2 LINE L2 3184 3223 -90 472 257 24 129 chr1 13679022 13679232 -228985121 - MER91A DNA MER1_type 0 196 9 379 262 70 41 chr1 13679276 13679334 -228985019 + MLT1K LTR MaLR 408 463 -125 2300 55 24 0 chr1 13679334 13679624 -228984729 + AluY SINE Alu 1 297 -14 379 262 70 41 chr1 13679624 13679737 -228984616 + MLT1K LTR MaLR 463 584 -4 770 273 39 0 chr1 13679891 13680096 -228984257 + MIR SINE MIR 25 237 -25 296 229 43 0 chr1 13680157 13680227 -228984126 + MIR SINE MIR 120 192 -70 2115 103 0 0 chr1 13680227 13680532 -228983821 + AluSx SINE Alu 1 305 0 1783 173 0 16 chr1 13680549 13680862 -228983491 + AluJo SINE Alu 5 312 0 237 159 99 53 chr1 13681573 13681680 -228982673 + MIR SINE MIR 38 149 -113 301 192 13 90 chr1 13681992 13682070 -228982283 + MIR SINE MIR 86 150 -58 2466 78 0 0 chr1 13682248 13682557 -228981796 - AluSx SINE Alu -3 309 1 180 0 0 0 chr1 13682587 13682607 -228981746 + (CTG)n Simple_repeat Simple_repeat 1 20 0 672 181 0 23 chr1 13683296 13683392 -228980961 + L1MB3 LINE L1 6047 6141 -42 2367 97 0 0 chr1 13683392 13683703 -228980650 + AluSx SINE Alu 1 311 -1 672 181 0 23 chr1 13683703 13683739 -228980614 + L1MB3 LINE L1 6141 6176 -7 831 262 83 4 chr1 13683981 13684210 -228980143 + MIR SINE MIR 5 251 -11 326 184 0 147 chr1 13684547 13684595 -228979758 + MLT1F LTR MaLR 133 158 -409 1943 121 10 20 chr1 13684595 13684900 -228979453 + AluJo SINE Alu 1 302 -10 326 184 0 147 chr1 13684900 13684960 -228979393 + MLT1F LTR MaLR 158 225 -342 603 149 252 19 chr1 13684993 13685165 -228979188 + MLT1F LTR MaLR 308 567 -23 236 317 10 30 chr1 13685876 13685977 -228978376 + MIR SINE MIR 23 121 -87 1815 167 0 3 chr1 13686460 13686760 -228977593 + AluJb SINE Alu 6 304 -8 206 263 45 60 chr1 13687288 13687421 -228976932 + GA-rich Low_complexity Low_complexity 4 134 0 * 295 225 25 0 chr1 13687347 13687427 -228976926 + G-rich Low_complexity Low_complexity 1 82 0 821 163 257 86 chr1 13687590 13687994 -228976359 - MLT1F1 LTR MaLR -31 536 3 2560 103 27 11 chr1 13688024 13688393 -228975960 - THE1C LTR MaLR 0 375 1 778 248 54 46 chr1 13689307 13689744 -228974609 - MLT1H LTR MaLR 0 549 39 2162 105 0 19 chr1 13689981 13690294 -228974059 - AluSx SINE Alu -5 307 1 454 185 25 25 chr1 13690637 13690799 -228973554 - L1ME3A LINE L1 -5 6165 5942 9660 43 14 115 chr1 13691340 13692873 -228971480 + SVA Other Other 1 1378 -8 2318 83 0 3 chr1 13693305 13693607 -228970746 + AluY SINE Alu 2 302 -9 561 234 39 14 chr1 13693713 13693867 -228970486 + MLT1H LTR MaLR 409 549 0 1645 154 19 26 chr1 13694165 13694476 -228969877 + AluJo SINE Alu 3 311 -1 2111 126 0 0 chr1 13694628 13694930 -228969423 + AluSx SINE Alu 1 302 -10 1266 124 60 5 chr1 13695392 13695593 -228968760 + AluJo SINE Alu 88 299 -13 361 215 10 177 chr1 13696391 13696598 -228967755 + MIR SINE MIR 8 147 -61 2344 48 3 32 chr1 13696599 13696915 -228967438 + AluY SINE Alu 1 307 -4 2024 124 0 19 chr1 13697123 13697438 -228966915 + AluJb SINE Alu 3 311 -1 2197 95 3 0 chr1 13697447 13697741 -228966612 + AluSx SINE Alu 1 295 -17 276 185 19 0 chr1 13697761 13697815 -228966538 + LTR37A LTR ERV1 18 72 -354 268 200 0 0 chr1 13697807 13697857 -228966496 + AluJo/FLAM SINE Alu 78 127 -175 * 2266 98 7 0 chr1 13697857 13698154 -228966199 + AluSx SINE Alu 1 299 -13 1957 141 3 0 chr1 13699344 13699667 -228964686 - AluSx SINE Alu 0 324 1 2125 112 10 0 chr1 13699699 13700003 -228964350 + AluSq SINE Alu 5 311 -2 1744 148 41 71 chr1 13700475 13700839 -228963514 - MLT1A1 LTR MaLR -12 353 1 436 286 43 0 chr1 13700859 13700999 -228963354 + L2 LINE L2 3168 3313 0 200 262 0 49 chr1 13700971 13701032 -228963321 - L2 LINE L2 -10 3303 3246 * 1898 144 0 3 chr1 13701133 13701424 -228962929 + AluJb SINE Alu 1 290 -22 631 307 33 21 chr1 13701439 13701680 -228962673 - MIR SINE MIR -6 256 13 353 298 57 8 chr1 13701713 13701837 -228962516 + L2 LINE L2 3165 3294 -19 185 181 69 28 chr1 13702697 13702769 -228961584 + L2 LINE L2 2987 3061 -211 760 171 20 48 chr1 13703508 13703654 -228960699 + FLAM_C SINE Alu 2 143 0 711 278 44 10 chr1 13703674 13703879 -228960474 + MIR SINE MIR 51 262 0 184 227 0 0 chr1 13703893 13703937 -228960416 - L2 LINE L2 -3 3310 3267 2141 114 10 0 chr1 13703980 13704279 -228960074 + AluSq SINE Alu 1 302 -11 346 273 61 23 chr1 13704413 13704545 -228959808 - L2 LINE L2 0 3272 3136 408 20 0 0 chr1 13705235 13705284 -228959069 + (TG)n Simple_repeat Simple_repeat 2 50 0 651 249 32 125 chr1 13705441 13705648 -228958705 - L3 LINE CR1 -1 1576 1412 2272 105 0 3 chr1 13705648 13705962 -228958391 + AluSq SINE Alu 1 313 0 651 249 32 125 chr1 13705962 13706099 -228958254 - L3 LINE CR1 -165 1412 1264 306 294 119 8 chr1 13706298 13706323 -228958030 - L3 LINE CR1 -1058 519 498 2122 125 3 0 chr1 13706323 13706627 -228957726 - AluSx SINE Alu -7 305 1 306 294 119 8 chr1 13706627 13706727 -228957626 - L3 LINE CR1 -1079 498 380 197 310 58 23 chr1 13706805 13706892 -228957461 - L3 LINE CR1 -539 1038 949 1895 120 58 3 chr1 13706965 13707256 -228957097 - AluSx SINE Alu -5 307 1 1448 146 26 99 chr1 13707787 13707924 -228956429 + AluYb8 SINE Alu 1 146 -172 1984 103 0 4 chr1 13707924 13708195 -228956158 + AluSg SINE Alu 2 271 -39 1448 146 26 99 chr1 13708195 13708399 -228955954 + AluYb8 SINE Alu 146 317 -1 784 309 96 56 chr1 13708453 13709003 -228955350 - L3 LINE CR1 -687 890 319 1955 146 0 13 chr1 13709018 13709327 -228955026 - AluJo SINE Alu -7 305 1 2437 66 0 0 chr1 13710000 13710304 -228954049 - AluY SINE Alu -6 305 2 299 242 91 114 chr1 13712920 13713184 -228951169 + L2 LINE L2 2456 2713 -601 2016 132 3 0 chr1 13713193 13713497 -228950856 + AluSx SINE Alu 5 309 -3 430 342 35 35 chr1 13713680 13713937 -228950416 + L2 LINE L2 2973 3229 -43 2269 88 0 3 chr1 13714791 13715087 -228949266 + AluSp SINE Alu 1 295 -18 2095 104 7 13 chr1 13715087 13715394 -228948959 + AluSp SINE Alu 1 305 -8 2808 163 63 68 chr1 13715645 13716105 -228948248 + L1ME2 LINE L1 5433 6048 -286 189 0 0 0 chr1 13716105 13716126 -228948227 + (CATA)n Simple_repeat Simple_repeat 4 24 0 2808 163 63 68 chr1 13716126 13716411 -228947942 + L1ME2 LINE L1 6048 6333 -1 231 245 0 0 chr1 13716414 13716467 -228947886 + L2 LINE L2 2708 2760 -554 * 2572 245 84 35 chr1 13716462 13717595 -228946758 - L2 LINE L2 -3 3310 2127 204 296 5 108 chr1 13717665 13717878 -228946475 + L2 LINE L2 2869 3059 -254 1198 226 104 51 chr1 13717912 13718237 -228946116 + L2 LINE L2 1990 2347 -967 2118 103 27 0 chr1 13718237 13718538 -228945815 + AluSx SINE Alu 1 309 -3 1198 226 104 51 chr1 13718538 13718664 -228945689 + L2 LINE L2 2347 2465 -849 1962 137 0 3 chr1 13718789 13719088 -228945265 + AluSg SINE Alu 1 298 -12 1964 152 0 3 chr1 13719695 13720005 -228944348 + AluSx SINE Alu 1 309 -3 2076 107 13 0 chr1 13720009 13720308 -228944045 + AluSp SINE Alu 1 303 -10 1649 114 82 18 chr1 13720379 13720659 -228943694 + AluSx SINE Alu 1 298 -14 1983 140 20 0 chr1 13720697 13720997 -228943356 - AluSx SINE Alu -5 307 2 2112 124 0 0 chr1 13721273 13721571 -228942782 - AluSx SINE Alu -14 298 1 1802 233 85 53 chr1 13721622 13722205 -228942148 + L2 LINE L2 2445 3008 -305 1662 135 17 24 chr1 13722205 13722494 -228941859 - AluJo SINE Alu -25 287 1 1802 233 85 53 chr1 13722494 13722614 -228941739 + L2 LINE L2 3008 3123 -190 440 203 42 85 chr1 13722614 13722732 -228941621 - MER81 DNA DNA -1 113 1 1802 233 85 53 chr1 13722732 13722860 -228941493 + L2 LINE L2 3123 3295 -18 2188 112 0 0 chr1 13723045 13723350 -228941003 + AluSg SINE Alu 1 305 -5 2252 82 0 3 chr1 13723360 13723666 -228940687 + AluSc SINE Alu 5 309 0 280 250 30 0 chr1 13724761 13724861 -228939492 + G-rich Low_complexity Low_complexity 1 103 0 230 144 0 83 chr1 13724870 13725002 -228939351 + (CGGGG)n Simple_repeat Simple_repeat 2 122 0 281 139 0 0 chr1 13725200 13725243 -228939110 - L2 LINE L2 0 3272 3230 999 183 105 9 chr1 13725253 13725472 -228938881 - MER63C DNA MER1_type -224 706 467 2227 92 0 0 chr1 13725476 13725770 -228938583 + AluSx SINE Alu 5 298 -14 1245 108 0 0 chr1 13725770 13725946 -228938407 + AluSg/x SINE Alu 132 307 -3 1462 190 88 16 chr1 13725954 13726317 -228938036 - MER63C DNA MER1_type -488 442 54 299 120 8 265 chr1 13726315 13726365 -228937988 - MER45A DNA AcHobo -1403 178 117 * 608 165 66 16 chr1 13726365 13726410 -228937943 + FLAM_A SINE Alu 1 42 -260 2281 66 0 3 chr1 13726410 13726698 -228937655 - AluY SINE Alu -23 288 2 608 165 66 16 chr1 13726698 13726773 -228937580 + FLAM_A SINE Alu 42 127 -175 1453 176 40 50 chr1 13726773 13726899 -228937454 + AluJb SINE Alu 1 127 -185 2284 84 3 3 chr1 13726899 13727207 -228937146 + AluY SINE Alu 1 308 -3 1453 176 40 50 chr1 13727207 13727382 -228936971 + AluJb SINE Alu 127 299 -13 299 120 8 265 chr1 13727382 13727402 -228936951 - MER45A DNA AcHobo -1463 118 145 2254 78 3 22 chr1 13727402 13727721 -228936632 + AluSp SINE Alu 1 313 0 299 120 8 265 chr1 13727721 13727765 -228936588 - MER45A DNA AcHobo -1435 146 92 302 292 158 0 chr1 13727923 13728043 -228936310 + MIR SINE MIR 49 187 -75 * 371 256 31 81 chr1 13728041 13728084 -228936269 - MIR SINE MIR 0 262 218 2008 109 35 0 chr1 13728084 13728369 -228935984 - AluSx SINE Alu -17 295 1 371 256 31 81 chr1 13728369 13728485 -228935868 - MIR SINE MIR -44 218 111 240 222 0 0 chr1 13728565 13728610 -228935743 + MIR SINE MIR 218 262 0 1819 61 0 0 chr1 13728640 13728868 -228935485 + L1PA6 LINE L1 5927 6154 0 1046 248 81 26 chr1 13729009 13729319 -228935034 + L1MC4a LINE L1 5523 5849 -1959 2458 145 89 39 chr1 13729321 13729358 -228934995 + LTR26 LTR ERV1 1 35 -568 2025 86 48 14 chr1 13729358 13729494 -228934859 + AluSx SINE Alu 1 131 -181 1603 132 21 103 chr1 13729494 13729834 -228934519 + AluYb8 SINE Alu 1 312 -6 2025 86 48 14 chr1 13729834 13729987 -228934366 + AluSx SINE Alu 131 300 -12 2458 145 89 39 chr1 13729987 13730362 -228933991 + LTR26 LTR ERV1 35 444 -159 2100 111 0 0 chr1 13730362 13730677 -228933676 + AluSg SINE Alu 1 315 0 2458 145 89 39 chr1 13730677 13730721 -228933632 + LTR26 LTR ERV1 444 484 -119 4330 135 21 21 chr1 13730721 13731432 -228932921 + MER50 LTR ERV1 1 711 -23 656 153 8 32 chr1 13731433 13731557 -228932796 + LTR26 LTR ERV1 481 601 -2 2409 57 0 31 chr1 13733101 13733419 -228930934 - AluSx SINE Alu -2 310 3 2037 107 0 28 chr1 13733565 13733882 -228930471 - AluSx SINE Alu 0 309 1 25448 75 4 7 chr1 13734351 13734464 -228929889 - L1P LINE L1 -2776 3370 3258 2274 68 31 0 chr1 13734464 13734756 -228929597 - AluY SINE Alu -10 301 1 25448 75 4 7 chr1 13734756 13738017 -228926336 - L1P LINE L1 -2888 3258 4 865 281 14 0 chr1 13738079 13738296 -228926057 - MIR SINE MIR -14 248 29 2126 101 3 0 chr1 13738420 13738744 -228925609 + AluSp SINE Alu 1 325 0 7485 39 3 1 chr1 13739167 13740471 -228923882 + L1PA5 LINE L1 4850 6154 0 1717 86 4 4 chr1 13741000 13741234 -228923119 + AluY SINE Alu 1 234 -77 405 52 35 0 chr1 13741337 13741395 -228922958 + AluSc SINE Alu 236 295 -14 1855 152 24 0 chr1 13741972 13742262 -228922091 + AluJo SINE Alu 1 297 -15 442 147 0 13 chr1 13742887 13742962 -228921391 - HsTC2 DNA Tc2 -1824 74 1 316 226 145 8 chr1 13744127 13744251 -228920102 + L1ME4a LINE L1 5803 5943 -178 2324 122 0 48 chr1 13745192 13745546 -228918807 + MER1B DNA MER1_type 1 337 0 2132 101 0 7 chr1 13746696 13747002 -228917351 - AluY SINE Alu -7 304 1 231 36 0 0 chr1 13747173 13747201 -228917152 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 1440 143 13 101 chr1 13747201 13747508 -228916845 - AluJb SINE Alu -32 280 1 201 330 175 19 chr1 13747703 13747909 -228916444 - L2 LINE L2 -220 3052 2815 1508 186 13 10 chr1 13748043 13748350 -228916003 - AluJo SINE Alu -4 308 1 461 274 78 34 chr1 13748466 13748645 -228915708 + MIR SINE MIR 3 189 -73 546 295 63 0 chr1 13748645 13748835 -228915518 + L1ME3A LINE L1 4658 4859 -1287 2468 259 75 50 chr1 13749004 13749370 -228914983 + L1ME3A LINE L1 4942 5297 -873 825 181 0 0 chr1 13749370 13749503 -228914850 + FLAM_A SINE Alu 1 133 0 2468 259 75 50 chr1 13749503 13750304 -228914049 + L1ME3A LINE L1 5297 6157 -13 239 356 44 0 chr1 13750304 13750394 -228913959 + MIR SINE MIR 167 260 -2 374 351 31 51 chr1 13750432 13750568 -228913785 + L2 LINE L2 3022 3159 -154 2181 97 3 3 chr1 13750568 13750867 -228913486 - AluSp SINE Alu -14 299 1 374 351 31 51 chr1 13750867 13751023 -228913330 + L2 LINE L2 3159 3308 -5 253 215 92 0 chr1 13751185 13751250 -228913103 - MIR3 SINE MIR -1 207 137 989 184 0 0 chr1 13751251 13751425 -228912928 - AluSg/x SINE Alu -3 307 134 872 164 25 6 chr1 13751664 13751823 -228912530 + AluJo SINE Alu 33 194 -118 2485 51 0 19 chr1 13751954 13752269 -228912084 + AluY SINE Alu 1 309 -2 474 308 104 46 chr1 13752355 13752615 -228911738 - L2 LINE L2 -1 3271 2997 491 229 38 105 chr1 13752622 13752832 -228911521 - MER39 LTR ERV1 -262 445 250 310 265 137 20 chr1 13752807 13752909 -228911444 - MER34 LTR ERV1 -428 114 1 * 410 256 38 23 chr1 13752943 13753076 -228911277 - L1MC4a LINE L1 -1909 5899 5765 1058 177 0 10 chr1 13753194 13753386 -228910967 - AluJo SINE Alu -122 190 1 1042 193 9 32 chr1 13753386 13753604 -228910749 - AluJo SINE Alu -15 297 85 32 75 0 0 chr1 13753791 13753858 -228910495 + AT_rich Low_complexity Low_complexity 1 67 0 671 153 0 0 chr1 13753859 13753957 -228910396 + AluJ/FLAM SINE Alu 2 99 -213 279 0 0 0 chr1 13754050 13754081 -228910272 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1152 153 39 10 chr1 13754107 13754150 -228910203 - MER3 DNA MER1_type 0 209 169 2132 135 0 0 chr1 13754150 13754462 -228909891 - AluSx SINE Alu 0 312 1 1152 153 39 10 chr1 13754462 13754621 -228909732 - MER3 DNA MER1_type -40 169 1 2034 112 0 0 chr1 13755401 13755687 -228908666 + AluSx SINE Alu 1 286 -26 644 161 89 0 chr1 13756073 13756185 -228908168 + FLAM_C SINE Alu 1 122 -21 1824 170 17 0 chr1 13756252 13756546 -228907807 + AluJb SINE Alu 1 299 -13 934 226 9 22 chr1 13757084 13757310 -228907043 - MER58A DNA MER1_type 0 224 2 262 237 0 0 chr1 13757743 13757802 -228906551 + T-rich Low_complexity Low_complexity 1 59 0 1577 177 6 29 chr1 13758567 13758706 -228905647 + AluJo SINE Alu 1 142 -170 2555 114 5 13 chr1 13758706 13759084 -228905269 - THE1C LTR MaLR 0 375 1 1577 177 6 29 chr1 13759084 13759255 -228905098 + AluJo SINE Alu 142 304 -8 27 49 0 0 chr1 13759255 13759296 -228905057 + AT_rich Low_complexity Low_complexity 1 41 0 219 36 0 0 chr1 13760874 13760902 -228903451 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2220 112 0 6 chr1 13761352 13761665 -228902688 - AluSx SINE Alu -1 311 1 542 160 198 0 chr1 13762026 13762132 -228902221 + FLAM_C SINE Alu 1 127 -16 2033 104 24 0 chr1 13762168 13762455 -228901898 + AluSp SINE Alu 3 296 -17 528 139 139 20 chr1 13762851 13762952 -228901401 - FLAM_A SINE Alu -8 134 22 1622 96 42 4 chr1 13763860 13764100 -228900253 - AluSq SINE Alu -14 299 51 2314 100 3 0 chr1 13764120 13764431 -228899922 - AluSx SINE Alu 0 312 1 181 247 49 49 chr1 13765240 13765321 -228899032 + L3 LINE CR1 589 669 -908 223 327 44 68 chr1 13766453 13766704 -228897649 - L2 LINE L2 -87 3185 2941 283 240 0 13 chr1 13766750 13766825 -228897528 + MER116 DNA Mariner 5 78 -2 1440 174 0 7 chr1 13767012 13767191 -228897162 - AluJb SINE Alu -8 304 126 7432 95 17 22 chr1 13767191 13768268 -228896085 - MER11C LTR ERVK 0 1071 1 1440 174 0 7 chr1 13768268 13768358 -228895995 - AluJb SINE Alu -186 126 37 2041 117 7 0 chr1 13768405 13768696 -228895657 + AluSx SINE Alu 1 293 -19 1058 98 20 0 chr1 13768697 13768850 -228895503 + AluSg/x SINE Alu 137 292 -20 1685 178 43 4 chr1 13769255 13769536 -228894817 + AluJo SINE Alu 1 292 -20 1084 113 256 3 chr1 13769543 13769796 -228894557 + Tigger2 DNA MER2_type 2405 2717 -1 2008 170 0 0 chr1 13769805 13770116 -228894237 - AluJb SINE Alu -1 311 1 2379 93 3 7 chr1 13770144 13770446 -228893907 + AluSg SINE Alu 1 301 -9 390 321 88 16 chr1 13770450 13770643 -228893710 + MIR SINE MIR 29 235 -27 566 285 58 47 chr1 13770947 13771308 -228893045 - L2 LINE L2 -1423 1891 1527 435 201 188 26 chr1 13771313 13771415 -228892938 + AluJo SINE Alu 2 86 -226 1922 92 92 42 chr1 13771415 13771699 -228892654 + AluSx SINE Alu 1 298 -14 2329 82 3 13 chr1 13771701 13772004 -228892349 + AluSg SINE Alu 1 300 -10 435 201 188 26 chr1 13772004 13772052 -228892301 + AluJo SINE Alu 86 180 -132 2162 104 38 0 chr1 13772084 13772371 -228891982 - AluSx SINE Alu -14 298 1 731 153 127 25 chr1 13772396 13772553 -228891800 - AluJb SINE Alu -25 287 115 477 178 89 0 chr1 13772585 13772686 -228891667 + FLAM_A SINE Alu 11 120 -22 28 71 0 0 chr1 13772971 13773027 -228891326 + GC_rich Low_complexity Low_complexity 1 56 0 617 267 58 26 chr1 13774343 13774534 -228889819 - MIR SINE MIR -21 241 45 204 317 149 31 chr1 13774531 13774692 -228889661 + L2 LINE L2 3129 3308 -5 * 2538 68 0 0 chr1 13775203 13775499 -228888854 - AluY SINE Alu -15 296 1 1998 108 70 3 chr1 13775540 13775712 -228888641 - AluSg SINE Alu -4 306 106 2107 117 7 23 chr1 13775712 13776012 -228888341 - AluSg SINE Alu -15 295 1 1998 108 70 3 chr1 13776012 13776126 -228888227 - AluSg SINE Alu -204 106 1 1918 170 0 16 chr1 13776165 13776482 -228887871 + AluJo SINE Alu 1 312 0 1461 127 10 0 chr1 13776493 13776698 -228887655 + AluSx SINE Alu 1 207 -105 1780 133 8 0 chr1 13776698 13776953 -228887400 + AluSx SINE Alu 41 297 -15 2597 62 0 3 chr1 13777204 13777510 -228886843 - AluY SINE Alu -6 305 1 2141 126 3 0 chr1 13777709 13778002 -228886351 - AluSq SINE Alu -9 304 11 2208 105 14 3 chr1 13778042 13778338 -228886015 + AluSx SINE Alu 1 299 -13 2159 121 0 20 chr1 13778341 13778646 -228885707 + AluSq SINE Alu 1 299 -14 801 165 0 8 chr1 13778664 13778791 -228885562 + FLAM_C SINE Alu 1 126 -17 1703 171 0 48 chr1 13778842 13779157 -228885196 - AluJo SINE Alu -11 301 2 560 283 125 47 chr1 13779371 13779714 -228884639 - L3 LINE CR1 -278 1299 930 21 0 0 0 chr1 13779846 13779867 -228884486 + AT_rich Low_complexity Low_complexity 1 21 0 1415 165 65 62 chr1 13779897 13780123 -228884230 - MER47A DNA MER2_type -1981 342 118 2284 122 0 3 chr1 13780123 13780426 -228883927 + AluSx SINE Alu 1 302 -10 2351 105 7 0 chr1 13780429 13780725 -228883628 + AluSc SINE Alu 1 298 -11 1415 165 65 62 chr1 13780725 13780834 -228883519 - MER47A DNA MER2_type -2206 117 2 1917 90 3 109 chr1 13780956 13781277 -228883076 + AluSg1 SINE Alu 5 291 -18 869 180 0 0 chr1 13782056 13782195 -228882158 + AluJb SINE Alu 167 305 -7 261 309 0 12 chr1 13782557 13782638 -228881715 - MIR SINE MIR -58 204 125 2527 83 0 0 chr1 13782644 13782945 -228881408 + AluSx SINE Alu 1 301 -11 1500 164 77 25 chr1 13782992 13783266 -228881087 - AluJo SINE Alu -24 288 1 2224 111 3 37 chr1 13783290 13783614 -228880739 - AluSq SINE Alu 0 313 1 1629 170 29 36 chr1 13783697 13784003 -228880350 - AluJo SINE Alu -8 304 1 4041 20 0 0 chr1 13785892 13786397 -228877956 - L1PA3 LINE L1 -2928 3218 2714 17194 30 4 3 chr1 13786397 13789318 -228875035 + L1PA3 LINE L1 3225 6155 0 2408 99 10 0 chr1 13789356 13789659 -228874694 - AluSp SINE Alu -7 306 1 1690 135 12 4 chr1 13789693 13789945 -228874408 + AluJb SINE Alu 1 254 -58 180 0 0 0 chr1 13790594 13790614 -228873739 + (TG)n Simple_repeat Simple_repeat 1 20 0 2494 72 13 0 chr1 13790837 13791141 -228873212 - AluSp SINE Alu -5 308 1 530 287 111 0 chr1 13791241 13791422 -228872931 - MIR SINE MIR -15 247 47 378 0 0 0 chr1 13792336 13792378 -228871975 + (TG)n Simple_repeat Simple_repeat 2 43 0 2463 71 3 3 chr1 13793248 13793545 -228870808 + AluSx SINE Alu 1 297 -15 2364 94 10 0 chr1 13793584 13793893 -228870460 - AluSx SINE Alu 0 312 1 1608 159 40 40 chr1 13794344 13794385 -228869968 - AluJo SINE Alu 0 312 272 2790 14 0 0 chr1 13794385 13794681 -228869672 + AluYa5 SINE Alu 1 296 -15 1608 159 40 40 chr1 13794681 13794941 -228869412 - AluJo SINE Alu -39 273 11 250 268 122 16 chr1 13795093 13795216 -228869137 - L2 LINE L2 0 3313 3178 2186 132 3 0 chr1 13795651 13795954 -228868399 + AluSq SINE Alu 1 304 -9 1083 166 12 0 chr1 13796582 13796745 -228867608 - AluJb SINE Alu -16 296 132 2263 117 7 3 chr1 13796748 13797057 -228867296 - AluSq SINE Alu -2 311 2 1531 140 0 13 chr1 13797058 13797287 -228867066 - AluJb SINE Alu 0 312 87 358 333 60 25 chr1 13797301 13797502 -228866851 + L3 LINE CR1 845 1052 -525 2064 98 54 0 chr1 13797623 13797900 -228866453 + AluSx SINE Alu 1 292 -20 443 285 70 19 chr1 13797934 13798092 -228866261 + MIR SINE MIR 18 183 -79 2352 96 0 13 chr1 13798225 13798528 -228865825 + AluSx SINE Alu 1 299 -13 2266 99 41 0 chr1 13799041 13799334 -228865019 - AluSx SINE Alu -7 305 1 2338 84 7 0 chr1 13799510 13799806 -228864547 + AluY SINE Alu 1 298 -13 333 215 0 0 chr1 13799846 13799925 -228864428 - L1ME3 LINE L1 0 6162 6084 482 296 95 0 chr1 13800398 13800577 -228863776 + MIR SINE MIR 46 241 -21 1065 262 154 11 chr1 13801131 13801657 -228862696 - L2 LINE L2 -339 2975 2375 1313 178 4 21 chr1 13802398 13802634 -228861719 - AluJo SINE Alu -8 304 73 1674 162 12 58 chr1 13802661 13802988 -228861365 - AluJo SINE Alu 0 312 1 180 77 0 0 chr1 13805313 13805339 -228859014 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 2073 117 0 18 chr1 13805344 13805489 -228858864 - AluSx SINE Alu -36 276 137 2551 53 0 3 chr1 13805489 13805792 -228858561 - AluY SINE Alu -9 302 1 2073 117 0 18 chr1 13805792 13805927 -228858426 - AluSx SINE Alu -175 137 1 2251 123 0 0 chr1 13806461 13806770 -228857583 + AluY SINE Alu 1 309 -2 559 135 0 0 chr1 13806805 13806894 -228857459 - AluJo SINE Alu -15 297 209 974 164 13 6 chr1 13806894 13807053 -228857300 - AluJo SINE Alu -152 160 1 1168 231 143 24 chr1 13807565 13808019 -228856334 - MLT1J LTR MaLR 0 511 4 2403 87 0 19 chr1 13808060 13808370 -228855983 - AluSq SINE Alu -9 304 1 2232 92 44 3 chr1 13808382 13808675 -228855678 - AluSq SINE Alu -8 305 1 2156 126 0 0 chr1 13808946 13809268 -228855085 - AluSx SINE Alu 0 322 1 227 53 0 26 chr1 13810104 13810142 -228854211 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2221 132 3 0 chr1 13810159 13810470 -228853883 - AluSx SINE Alu 0 312 1 213 333 48 24 chr1 13811063 13811147 -228853206 - L2 LINE L2 -84 3188 3103 784 134 16 0 chr1 13811327 13811454 -228852899 - FLAM_C SINE Alu -3 130 2 2268 82 0 26 chr1 13811464 13811767 -228852586 - AluSc SINE Alu -12 297 3 192 75 38 57 chr1 13812671 13812724 -228851629 + (CCCGG)n Simple_repeat Simple_repeat 3 54 0 30 45 0 0 chr1 13812851 13812895 -228851458 + GC_rich Low_complexity Low_complexity 1 44 0 47 78 0 0 chr1 13812940 13813043 -228851310 + GC_rich Low_complexity Low_complexity 1 103 0 2380 92 3 3 chr1 13814358 13814663 -228849690 - AluSp SINE Alu -8 305 1 452 294 62 59 chr1 13814736 13814863 -228849490 - L2 LINE L2 -7 3265 3140 2237 125 0 0 chr1 13814863 13815166 -228849187 + AluSx SINE Alu 1 303 -9 452 294 62 59 chr1 13815166 13815361 -228848992 - L2 LINE L2 -132 3140 2942 1062 126 248 4 chr1 13815380 13815618 -228848735 + AluY SINE Alu 1 296 -5 1616 160 78 3 chr1 13815785 13816067 -228848286 + AluJo SINE Alu 1 303 -9 209 143 0 24 chr1 13816742 13816784 -228847569 + MIR SINE MIR 47 87 -175 189 107 0 0 chr1 13816954 13816982 -228847371 + (CGGGG)n Simple_repeat Simple_repeat 2 29 0 2447 71 0 3 chr1 13817228 13817524 -228846829 + AluY SINE Alu 2 296 -15 1908 101 73 31 chr1 13817533 13817821 -228846532 + AluSx SINE Alu 1 300 -12 315 247 75 34 chr1 13820542 13820688 -228843665 + MER21B LTR ERV1 98 249 -614 2002 128 29 20 chr1 13820716 13820928 -228843425 + AluSx SINE Alu 3 220 -92 4938 77 25 9 chr1 13820928 13821608 -228842745 + LTR8 LTR ERV1 1 691 0 2002 128 29 20 chr1 13821608 13821701 -228842652 + AluSx SINE Alu 220 311 -1 204 219 0 0 chr1 13821707 13821748 -228842605 + A-rich Low_complexity Low_complexity 3 43 0 549 131 0 0 chr1 13821751 13821835 -228842518 + LTR26E LTR ERV1 42 125 -497 1705 89 0 0 chr1 13821875 13822089 -228842264 + AluSq SINE Alu 5 218 -95 497 90 26 0 chr1 13822110 13822188 -228842165 - AluS SINE Alu -220 93 14 1834 73 17 0 chr1 13822192 13822424 -228841929 + AluSp SINE Alu 70 305 -8 297 119 0 0 chr1 13822427 13822469 -228841884 - Alu SINE Alu -260 42 1 508 269 66 5 chr1 13822470 13822667 -228841686 - HAL1 LINE L1 -413 2094 1886 593 272 152 18 chr1 13822726 13822924 -228841429 + LTR8 LTR ERV1 1 232 -459 2509 55 7 0 chr1 13822924 13823214 -228841139 - AluY SINE Alu -19 292 1 593 272 152 18 chr1 13823214 13823232 -228841121 + LTR8 LTR ERV1 232 246 -445 201 147 0 0 chr1 13823257 13823291 -228841062 + (T)n Simple_repeat Simple_repeat 1 34 0 2138 108 7 0 chr1 13823304 13823581 -228840772 + AluSg SINE Alu 1 279 -31 1442 106 45 0 chr1 13823582 13823781 -228840572 - AluSg/x SINE Alu -3 309 102 330 269 75 45 chr1 13823790 13823991 -228840362 - HAL1 LINE L1 -1013 1494 1288 1643 188 0 34 chr1 13824009 13824307 -228840046 - AluJo SINE Alu -24 288 1 1836 73 5 0 chr1 13824333 13824553 -228839800 + AluSp SINE Alu 1 221 -92 839 107 16 8 chr1 13824554 13824676 -228839677 + FLAM_C SINE Alu 11 133 -10 324 239 58 51 chr1 13824709 13824818 -228839535 + HAL1 LINE L1 95 207 -2300 2408 109 0 0 chr1 13824818 13825122 -228839231 - AluSg SINE Alu -6 304 1 324 239 58 51 chr1 13825122 13825150 -228839203 + HAL1 LINE L1 207 233 -2274 1869 145 25 0 chr1 13825207 13825490 -228838863 + AluSx SINE Alu 1 290 -22 2227 120 0 0 chr1 13826629 13826930 -228837423 + AluSx SINE Alu 1 301 -11 290 291 12 12 chr1 13826993 13827079 -228837274 + MIR SINE MIR 38 123 -139 482 239 4 4 chr1 13830239 13830474 -228833879 + (TCCA)n Simple_repeat Simple_repeat 1 235 0 766 195 2 7 chr1 13830499 13830911 -228833442 + (TCCA)n Simple_repeat Simple_repeat 1 410 0 357 131 0 0 chr1 13830934 13830995 -228833358 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 741 194 0 0 chr1 13831019 13831199 -228833154 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 248 132 26 0 chr1 13831311 13831349 -228833004 - Alu SINE Alu -262 39 1 749 185 155 22 chr1 13831364 13831596 -228832757 + MER2 DNA MER2_type 83 345 0 194 28 0 83 chr1 13831604 13831640 -228832713 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2275 98 7 3 chr1 13832901 13833196 -228831157 - AluSc SINE Alu -13 296 1 2403 89 0 3 chr1 13833199 13833502 -228830851 - AluSg SINE Alu -7 303 2 36 53 0 0 chr1 13833903 13833960 -228830393 + AT_rich Low_complexity Low_complexity 1 57 0 932 166 72 17 chr1 13833960 13834141 -228830212 - AluJb SINE Alu -17 295 105 1511 208 10 3 chr1 13834171 13834460 -228829893 - AluJo SINE Alu -18 294 4 2393 105 0 6 chr1 13834468 13834783 -228829570 - AluSq SINE Alu 0 313 1 665 194 0 50 chr1 13834786 13834925 -228829428 - AluJo/FLAM SINE Alu -170 132 1 995 151 16 43 chr1 13834925 13835110 -228829243 - AluJo SINE Alu -20 292 113 538 291 158 65 chr1 13835598 13835996 -228828357 + LTR33 LTR ERVL 38 472 -49 2062 136 7 7 chr1 13836144 13836446 -228827907 + AluSx SINE Alu 1 302 -10 2412 104 3 0 chr1 13836457 13836764 -228827589 + AluSq SINE Alu 1 308 -5 581 192 14 55 chr1 13840562 13840708 -228823645 + MIR SINE MIR 111 250 -12 222 231 0 0 chr1 13841305 13841370 -228822983 + (TGG)n Simple_repeat Simple_repeat 2 66 0 284 227 136 0 chr1 13842659 13842747 -228821606 - L2 LINE L2 -1 3271 3172 524 254 35 56 chr1 13844280 13844477 -228819876 - MIR SINE MIR -5 257 65 1006 138 141 145 chr1 13844480 13844770 -228819583 + AluJo SINE Alu 6 294 -18 2451 80 10 0 chr1 13846249 13846550 -228817803 + AluSx SINE Alu 1 304 -8 2446 96 0 0 chr1 13846550 13846853 -228817500 + AluSx SINE Alu 1 303 -9 245 211 84 0 chr1 13846935 13847006 -228817347 - L2 LINE L2 -253 3060 2984 1062 126 248 4 chr1 13847067 13847305 -228817048 + AluY SINE Alu 1 296 -5 1616 160 78 3 chr1 13847472 13847754 -228816599 + AluJo SINE Alu 1 303 -9 209 143 0 24 chr1 13848429 13848471 -228815882 + MIR SINE MIR 47 87 -175 189 107 0 0 chr1 13848641 13848669 -228815684 + (CGGGG)n Simple_repeat Simple_repeat 2 29 0 186 242 129 0 chr1 13849499 13849561 -228814792 - MIR SINE MIR -123 139 70 2295 94 0 0 chr1 13851329 13851617 -228812736 - AluSg SINE Alu -22 288 1 889 144 8 0 chr1 13851619 13851751 -228812602 - AluSq/x SINE Alu -179 133 1 1577 136 136 20 chr1 13851873 13852175 -228812178 - MER1B DNA MER1_type 0 337 1 544 209 104 8 chr1 13852223 13852357 -228811996 + MIR SINE MIR 50 196 -66 1878 154 18 0 chr1 13852745 13853025 -228811328 - AluJb SINE Alu -11 301 17 2016 121 0 4 chr1 13853025 13853297 -228811056 - AluSx SINE Alu -41 271 1 21 0 0 0 chr1 13853305 13853326 -228811027 + AT_rich Low_complexity Low_complexity 1 21 0 1217 111 6 6 chr1 13853511 13853691 -228810662 + AluY SINE Alu 132 311 0 356 153 17 0 chr1 13853893 13853952 -228810401 + AluS SINE Alu 1 60 -242 2171 110 0 27 chr1 13853957 13854257 -228810096 - AluSx SINE Alu -20 292 1 879 150 72 6 chr1 13855846 13856013 -228808340 - MER5B DNA MER1_type 0 178 1 1696 118 83 55 chr1 13857039 13857328 -228807025 - AluSx SINE Alu -15 297 1 1081 104 0 0 chr1 13857328 13857463 -228806890 - AluSq/x SINE Alu -178 135 1 420 270 149 22 chr1 13860437 13860688 -228803665 + MLT1J LTR MaLR 235 458 -53 378 257 0 35 chr1 13860704 13860817 -228803536 + MER21B LTR ERV1 1 109 -754 2388 69 7 0 chr1 13860972 13861262 -228803091 + AluSg SINE Alu 1 292 -18 449 127 0 0 chr1 13861301 13861364 -228802989 - AluJb SINE Alu -193 119 57 1154 53 0 0 chr1 13861464 13861596 -228802757 + AluSg/x SINE Alu 160 291 -18 836 164 0 0 chr1 13861630 13861752 -228802601 - AluJb SINE Alu -190 122 1 444 242 40 0 chr1 13861951 13862050 -228802303 + MER21B LTR ERV1 140 242 -621 1792 210 102 22 chr1 13862077 13862539 -228801814 + MER21B LTR ERV1 329 827 -36 923 197 33 0 chr1 13864174 13864357 -228799996 - MER5A DNA MER1_type 0 189 1 504 47 16 0 chr1 13865036 13865100 -228799253 + U6 snRNA snRNA 1 65 -42 285 301 0 0 chr1 13865729 13865802 -228798551 + MIR3 SINE MIR 108 180 -28 932 142 27 0 chr1 13866314 13866462 -228797891 + MER3 DNA MER1_type 1 152 -57 2213 146 0 0 chr1 13866473 13866782 -228797571 + AluSx SINE Alu 1 309 -3 1876 108 12 0 chr1 13866784 13867057 -228797296 + AluY SINE Alu 32 307 0 2170 108 24 0 chr1 13867530 13867818 -228796535 - AluSq SINE Alu -18 295 1 260 221 13 26 chr1 13869585 13869662 -228794691 + L1ME LINE L1 5578 5653 -468 570 224 0 8 chr1 13869814 13870057 -228794296 + (TCCA)n Simple_repeat Simple_repeat 1 241 0 856 166 5 5 chr1 13870079 13870301 -228794052 + (TCCA)n Simple_repeat Simple_repeat 1 222 0 671 158 7 0 chr1 13870312 13870458 -228793895 + (TCCA)n Simple_repeat Simple_repeat 2 148 0 371 282 76 86 chr1 13870470 13870761 -228793592 - L2 LINE L2 -61 3211 2924 220 291 39 10 chr1 13870894 13870997 -228793356 - L3 LINE CR1 -222 1355 1250 469 218 205 51 chr1 13871413 13871569 -228792784 - MIR SINE MIR -35 227 48 1463 134 20 108 chr1 13872370 13872714 -228791639 + AluYb8 SINE Alu 1 314 -4 2848 6 0 0 chr1 13873218 13873535 -228790818 - AluYb8 SINE Alu 0 318 2 2086 122 3 3 chr1 13873842 13874146 -228790207 - AluJb SINE Alu -8 304 1 261 0 0 0 chr1 13874201 13874230 -228790123 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1887 129 0 11 chr1 13874230 13874517 -228789836 - AluSx SINE Alu -28 284 1 2023 139 0 3 chr1 13875031 13875341 -228789012 - AluJb SINE Alu -1 311 3 1722 128 4 18 chr1 13875496 13875769 -228788584 - AluSx SINE Alu -9 303 35 189 0 0 0 chr1 13875772 13875793 -228788560 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 360 0 0 0 chr1 13875792 13875832 -228788521 + (TG)n Simple_repeat Simple_repeat 2 41 0 1740 98 8 8 chr1 13875832 13876076 -228788277 - AluSx SINE Alu -34 278 35 1918 148 3 3 chr1 13876091 13876396 -228787957 - AluSx SINE Alu -7 305 1 2347 78 3 0 chr1 13876404 13876712 -228787641 - AluSp SINE Alu -4 309 1 266 140 53 0 chr1 13876719 13876776 -228787577 - L1ME4a LINE L1 -3 6118 6059 2118 112 0 0 chr1 13876836 13877132 -228787221 - AluSx SINE Alu -16 296 1 1968 122 10 0 chr1 13877134 13877429 -228786924 - AluSx SINE Alu -14 298 1 860 178 29 23 chr1 13877544 13877718 -228786635 - AluJo SINE Alu -52 260 86 1430 154 81 0 chr1 13877838 13878110 -228786243 - AluJb SINE Alu -18 294 1 2347 59 0 20 chr1 13878212 13878517 -228785836 - AluY SINE Alu -12 299 1 885 157 25 6 chr1 13878648 13878807 -228785546 - AluJo SINE Alu -118 194 33 1877 105 73 0 chr1 13879838 13880124 -228784229 + AluSp SINE Alu 1 307 -6 607 77 0 0 chr1 13880353 13880431 -228783922 - AluSc SINE Alu -24 285 208 2361 73 0 25 chr1 13880459 13880775 -228783578 + AluY SINE Alu 1 308 -3 2117 93 0 0 chr1 13880777 13881057 -228783296 + AluY SINE Alu 32 311 0 2019 105 25 0 chr1 13881531 13881817 -228782536 - AluSq SINE Alu -20 293 1 346 192 0 26 chr1 13883541 13883619 -228780734 + L1ME LINE L1 5578 5653 -468 1384 145 9 109 chr1 13887842 13888173 -228776180 + AluJo SINE Alu 1 298 -14 880 114 0 8 chr1 13888184 13888315 -228776038 + AluSq/x SINE Alu 4 133 -180 2161 100 0 7 chr1 13888318 13888618 -228775735 + AluSq SINE Alu 1 298 -15 1958 104 7 30 chr1 13888835 13889132 -228775221 - AluSc SINE Alu -19 290 1 1416 177 110 49 chr1 13889534 13889599 -228774754 - MER7A DNA MER2_type -2692 346 286 2077 106 17 0 chr1 13889599 13889892 -228774461 + AluSq SINE Alu 1 298 -15 2194 99 0 0 chr1 13889893 13890187 -228774166 + AluY SINE Alu 1 294 -17 1416 177 110 49 chr1 13890187 13890447 -228773906 - MER7A DNA MER2_type -2751 287 1 1812 145 3 10 chr1 13891270 13891573 -228772780 + AluJo SINE Alu 1 301 -11 2408 72 0 0 chr1 13891577 13891881 -228772472 + AluY SINE Alu 1 304 -7 629 165 0 9 chr1 13891881 13891985 -228772368 - AluJo/FLAM SINE Alu -201 111 9 2068 96 17 3 chr1 13892258 13892560 -228771793 + AluSq SINE Alu 1 306 -7 420 183 154 19 chr1 13892574 13892678 -228771675 + FLAM_C SINE Alu 1 118 -15 739 169 70 58 chr1 13893315 13893487 -228770866 + FAM SINE Alu 2 175 0 1191 109 10 10 chr1 13893505 13893520 -228770833 + AluSg/x SINE Alu 118 132 -177 2079 91 0 14 chr1 13893520 13893849 -228770504 + AluSg SINE Alu 1 310 0 1191 109 10 10 chr1 13893849 13894025 -228770328 + AluSg/x SINE Alu 131 309 0 1140 108 0 0 chr1 13894077 13894235 -228770118 - AluSg/x SINE Alu -18 294 137 1948 128 7 0 chr1 13894267 13894555 -228769798 - AluSx SINE Alu -22 290 1 1028 117 7 0 chr1 13894640 13894794 -228769559 - AluSc SINE Alu -16 293 139 2058 121 10 0 chr1 13894796 13895102 -228769251 - AluSq SINE Alu -4 309 1 249 255 0 0 chr1 13896243 13896294 -228768059 - L2 LINE L2 -1 3271 3221 181 29 29 57 chr1 13897445 13897480 -228766873 + (CGGGG)n Simple_repeat Simple_repeat 5 38 0 497 241 109 7 chr1 13897631 13897768 -228766585 - MIR SINE MIR -27 235 85 1018 110 0 7 chr1 13897769 13897923 -228766430 + AluSg/x SINE Alu 128 280 -32 194 260 0 40 chr1 13897945 13897995 -228766358 - MIR SINE MIR -170 92 45 1722 98 81 28 chr1 13898071 13898356 -228765997 - AluSx SINE Alu -2 310 11 299 132 66 0 chr1 13898368 13898444 -228765909 + CT-rich Low_complexity Low_complexity 1 81 0 204 40 0 0 chr1 13898462 13898487 -228765866 + (TC)n Simple_repeat Simple_repeat 1 25 0 1562 108 84 0 chr1 13898487 13898737 -228765616 - AluSx SINE Alu -8 304 34 2416 58 0 3 chr1 13898762 13899074 -228765279 - AluY SINE Alu 0 311 1 1689 179 0 3 chr1 13899227 13899524 -228764829 - AluJo SINE Alu -15 297 2 305 264 28 0 chr1 13899537 13899609 -228764744 - MIR SINE MIR -110 152 79 2106 119 0 0 chr1 13900025 13900319 -228764034 - AluSx SINE Alu -18 294 1 2137 87 30 3 chr1 13900457 13900756 -228763597 + AluSq SINE Alu 3 309 -4 2122 52 48 0 chr1 13900790 13901085 -228763268 - AluY SINE Alu 0 308 1 351 0 0 0 chr1 13901086 13901125 -228763228 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 671 241 0 14 chr1 13901127 13901268 -228763085 - AluJo SINE Alu -153 159 21 622 85 85 0 chr1 13901318 13901412 -228762941 + AluSp SINE Alu 2 103 -210 828 180 41 5 chr1 13901512 13901706 -228762647 - AluSx SINE Alu -111 201 1 519 255 8 0 chr1 13901729 13901872 -228762481 + L1MC4 LINE L1 7650 8042 0 269 26 26 0 chr1 13901925 13901963 -228762390 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 680 259 13 13 chr1 13901965 13902123 -228762230 - AluJo SINE Alu -153 159 2 2049 87 31 0 chr1 13902155 13902441 -228761912 + AluSp SINE Alu 1 295 -18 1561 165 23 0 chr1 13902450 13902716 -228761637 + AluJb SINE Alu 1 272 -40 956 211 28 83 chr1 13902840 13903006 -228761347 - L1MC3 LINE L1 0 8042 7868 2017 120 3 3 chr1 13903006 13903298 -228761055 + AluSx SINE Alu 1 292 -20 956 211 28 83 chr1 13903298 13903493 -228760860 - L1MC3 LINE L1 -174 7868 7650 1835 123 0 38 chr1 13903533 13903849 -228760504 + AluJb SINE Alu 9 312 0 321 152 29 21 chr1 13903871 13903961 -228760392 - Alu SINE Alu -3 297 242 940 127 0 61 chr1 13904065 13904246 -228760107 + AluJb SINE Alu 9 178 -134 1095 175 60 5 chr1 13906585 13906802 -228757551 + AluJo SINE Alu 64 292 -20 1161 136 212 12 chr1 13906812 13907062 -228757291 + Tigger2 DNA MER2_type 2418 2717 -1 1094 161 11 0 chr1 13907071 13907257 -228757096 - AluJb SINE Alu -2 310 123 23 33 0 0 chr1 13907279 13907309 -228757044 + AT_rich Low_complexity Low_complexity 1 30 0 1072 192 0 60 chr1 13907349 13907583 -228756770 - AluJo SINE Alu -92 220 1 1116 128 174 58 chr1 13908028 13908286 -228756067 - MER7A DNA MER2_type -1 345 60 1817 117 4 7 chr1 13908361 13908635 -228755718 + AluSx SINE Alu 27 299 -13 288 0 0 0 chr1 13908661 13908693 -228755660 + (TG)n Simple_repeat Simple_repeat 2 33 0 475 141 13 13 chr1 13908711 13908789 -228755564 + AluJ/FLAM SINE Alu 6 83 -229 480 348 47 40 chr1 13909046 13909403 -228754950 - L2 LINE L2 -562 2752 2390 2208 99 0 3 chr1 13909403 13909705 -228754648 - AluSx SINE Alu -10 302 2 480 348 47 40 chr1 13909705 13909749 -228754604 - L2 LINE L2 -924 2390 2348 300 291 20 41 chr1 13909876 13909921 -228754432 + L1MA8 LINE L1 5784 5828 -463 1856 151 10 7 chr1 13909921 13910226 -228754127 + AluSx SINE Alu 1 306 -6 1011 155 21 5 chr1 13910226 13910413 -228753940 + L1PB4 LINE L1 5823 6012 -144 203 216 171 0 chr1 13911012 13911085 -228753268 - MIR SINE MIR -81 127 34 2283 93 0 3 chr1 13911160 13911473 -228752880 + AluSx SINE Alu 1 312 0 298 151 170 0 chr1 13911492 13911545 -228752808 + AluJ/FLAM SINE Alu 1 62 -240 2517 59 0 0 chr1 13911545 13911850 -228752503 + AluSx SINE Alu 1 305 -7 1690 135 7 28 chr1 13912243 13912382 -228751971 + AluSx SINE Alu 1 141 -171 1803 117 36 36 chr1 13912382 13912691 -228751662 + AluSq SINE Alu 1 309 -4 1690 135 7 28 chr1 13912691 13912840 -228751513 + AluSx SINE Alu 141 283 -29 292 275 33 22 chr1 13912853 13912944 -228751409 + L1MC3 LINE L1 7050 7141 -644 1384 170 61 11 chr1 13913129 13913406 -228750947 + AluJo SINE Alu 1 291 -21 1200 140 6 0 chr1 13913417 13913595 -228750758 + AluSc SINE Alu 1 179 -130 2063 84 7 3 chr1 13913778 13914062 -228750291 + AluSp SINE Alu 16 300 -13 1204 186 33 36 chr1 13914068 13914188 -228750165 + AluJb SINE Alu 1 120 -192 2362 80 3 0 chr1 13914188 13914488 -228749865 + AluSp SINE Alu 1 301 -12 1204 186 33 36 chr1 13914488 13914668 -228749685 + AluJb SINE Alu 120 300 -12 423 266 84 35 chr1 13914672 13914752 -228749601 + LTR33A LTR ERVL 309 384 -139 2507 128 79 12 chr1 13914752 13915180 -228749173 + MSTB2 LTR MaLR 1 457 0 423 266 84 35 chr1 13915180 13915302 -228749051 + LTR33A LTR ERVL 384 521 -2 1498 186 10 16 chr1 13915331 13915638 -228748715 + AluJb SINE Alu 1 305 -7 271 111 0 0 chr1 13915639 13915675 -228748678 + AluS SINE Alu 29 64 -239 1649 156 0 7 chr1 13916058 13916334 -228748019 + AluJo SINE Alu 9 282 -30 363 315 55 36 chr1 13916354 13916519 -228747834 - MIR SINE MIR 0 262 95 534 187 98 8 chr1 13916544 13916667 -228747686 - MIR3 SINE MIR -60 148 15 246 210 320 0 chr1 13917228 13917328 -228747025 - MIR SINE MIR -14 248 117 1951 86 41 0 chr1 13917332 13917600 -228746753 + AluSx SINE Alu 3 281 -31 216 0 0 0 chr1 13917607 13917631 -228746722 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 254 214 0 0 chr1 13917686 13917728 -228746625 + Tigger2 DNA MER2_type 2627 2668 -50 349 165 62 21 chr1 13918301 13918398 -228745955 - L1MC4 LINE L1 -464 7578 7478 2101 107 3 13 chr1 13918406 13918716 -228745637 + AluSg SINE Alu 1 307 -3 1283 143 152 0 chr1 13918724 13918968 -228745385 + AluJo SINE Alu 2 282 -30 625 300 29 63 chr1 13918990 13919204 -228745149 - L1MC5 LINE L1 -191 7770 7550 1929 147 3 6 chr1 13919204 13919517 -228744836 - AluJb SINE Alu 0 312 1 625 300 29 63 chr1 13919517 13919778 -228744575 - L1MC5 LINE L1 -411 7550 7311 610 267 21 62 chr1 13919820 13919912 -228744441 - L1MC4 LINE L1 -606 7436 7342 2507 50 0 3 chr1 13919912 13920214 -228744139 + AluY SINE Alu 1 301 -10 610 267 21 62 chr1 13920214 13920409 -228743944 - L1MC4 LINE L1 -700 7342 7161 2087 110 0 0 chr1 13920416 13920733 -228743620 - AluSg SINE Alu 0 317 1 1212 175 8 40 chr1 13920735 13920987 -228743366 - AluJo SINE Alu -10 302 59 1736 117 0 4 chr1 14122798 14123029 -228541324 + AluSg1 SINE Alu 1 230 -79 1256 157 80 73 chr1 14123168 14123468 -228540885 + AluJo SINE Alu 1 302 -10 2121 126 0 0 chr1 14125904 14126198 -228538155 + AluSq SINE Alu 1 294 -19 2183 100 3 32 chr1 14127009 14127320 -228537033 + AluSp SINE Alu 1 302 -11 2340 70 0 54 chr1 14128870 14129185 -228535168 - AluY SINE Alu -13 298 1 680 130 10 0 chr1 14129185 14129285 -228535068 - AluY SINE Alu -167 144 44 22 35 0 0 chr1 14129332 14129361 -228534992 + AT_rich Low_complexity Low_complexity 1 29 0 2240 110 7 0 chr1 14129639 14129940 -228534413 - AluSx SINE Alu -9 303 1 2451 80 0 16 chr1 14131054 14131368 -228532985 - AluY SINE Alu -2 309 1 2244 112 7 0 chr1 14131382 14131687 -228532666 - AluSc SINE Alu -2 307 1 1707 164 3 24 chr1 14131695 14131987 -228532366 - AluSx SINE Alu -23 289 4 2919 7 0 0 chr1 14132004 14132312 -228532041 - AluYa5 SINE Alu -3 308 1 1935 122 7 7 chr1 14132335 14132622 -228531731 - AluSx SINE Alu -25 287 1 1032 145 0 13 chr1 14135218 14135413 -228528940 - AluSg/x SINE Alu 0 310 132 2024 85 0 8 chr1 14135413 14135671 -228528682 - AluSx SINE Alu -13 299 44 1581 166 46 14 chr1 14135675 14135958 -228528395 - AluJo SINE Alu -20 292 1 567 246 0 36 chr1 14136763 14136901 -228527452 + FLAM_A SINE Alu 1 133 0 2140 132 0 7 chr1 14137142 14137452 -228526901 - AluSg SINE Alu -2 308 1 547 136 0 0 chr1 14137454 14137535 -228526818 - AluSg/x SINE Alu -21 289 209 300 267 114 42 chr1 14137540 14137729 -228526624 + L2 LINE L2 2756 2955 -317 1428 163 113 25 chr1 14137729 14138012 -228526341 + AluSg SINE Alu 1 308 -2 312 329 48 21 chr1 14138057 14138322 -228526031 + MLT1J2 LTR MaLR 61 364 -86 654 108 0 21 chr1 14138456 14138549 -228525804 + AluS SINE Alu 3 93 -219 2440 137 22 63 chr1 14138612 14138663 -228525690 + MSTA LTR MaLR 1 53 -375 2253 107 13 0 chr1 14138663 14138971 -228525382 + AluSx SINE Alu 1 312 0 2440 137 22 63 chr1 14138971 14139313 -228525040 + MSTA LTR MaLR 53 376 -52 2278 114 0 0 chr1 14139313 14139610 -228524743 + AluSx SINE Alu 3 299 -13 2440 137 22 63 chr1 14139610 14139661 -228524692 + MSTA LTR MaLR 376 428 0 1723 196 0 28 chr1 14139815 14140132 -228524221 + AluJo SINE Alu 1 308 -4 758 282 60 39 chr1 14140362 14140391 -228523962 - L2 LINE L2 0 3313 3286 3574 145 36 0 chr1 14140391 14140949 -228523404 - LTR19B LTR ERV1 0 580 3 758 282 60 39 chr1 14140949 14141203 -228523150 - L2 LINE L2 -27 3286 3024 801 134 25 0 chr1 14141324 14141443 -228522910 + FRAM SINE Alu 22 143 -33 29 70 0 0 chr1 14141454 14141511 -228522842 + AT_rich Low_complexity Low_complexity 1 57 0 893 242 136 8 chr1 14141537 14141884 -228522469 - L2 LINE L2 -287 3026 2633 1212 106 0 0 chr1 14141884 14142063 -228522290 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 1024 123 6 6 chr1 14142075 14142254 -228522099 + (TAGG)n Simple_repeat Simple_repeat 1 179 0 719 220 155 26 chr1 14142256 14142426 -228521927 - L2 LINE L2 -652 2662 2515 2260 114 0 7 chr1 14142426 14142732 -228521621 - AluSq SINE Alu -9 304 1 719 220 155 26 chr1 14142732 14142825 -228521528 - L2 LINE L2 -799 2515 2365 3502 115 22 51 chr1 14143134 14143287 -228521066 + HSMAR2 DNA Mariner 9 165 -1137 2053 99 88 3 chr1 14143287 14143571 -228520782 + AluSc SINE Alu 1 308 -1 3502 115 22 51 chr1 14143571 14143752 -228520601 + HSMAR2 DNA Mariner 165 350 -952 1452 166 64 42 chr1 14143752 14143880 -228520473 + AluJb SINE Alu 1 125 -187 2315 103 3 0 chr1 14143880 14144171 -228520182 + AluSp SINE Alu 1 292 -21 1452 166 64 42 chr1 14144171 14144325 -228520028 + AluJb SINE Alu 125 289 -23 3502 115 22 51 chr1 14144325 14144615 -228519738 + HSMAR2 DNA Mariner 350 616 -686 1386 146 29 38 chr1 14144615 14144698 -228519655 + AluSx SINE Alu 58 140 -172 2232 105 10 7 chr1 14144698 14145003 -228519350 + AluSq SINE Alu 1 306 -7 1386 146 29 38 chr1 14145003 14145158 -228519195 + AluSx SINE Alu 140 294 -18 2164 128 0 0 chr1 14145181 14145477 -228518876 - AluSg SINE Alu -14 296 1 1134 82 0 0 chr1 14145477 14145612 -228518741 - AluSq/x SINE Alu -178 135 1 924 148 6 41 chr1 14145612 14145781 -228518572 - FRAM SINE Alu -13 163 1 2391 101 0 0 chr1 14146349 14146645 -228517708 + AluSg SINE Alu 1 296 -14 2245 112 14 0 chr1 14147157 14147453 -228516900 - AluSc SINE Alu -9 300 1 670 244 171 13 chr1 14147797 14148031 -228516322 + MLT1J1 LTR MaLR 61 331 -115 906 216 129 4 chr1 14148106 14148338 -228516015 - MIR SINE MIR 0 262 2 1580 152 76 4 chr1 14148350 14148613 -228515740 - AluSg SINE Alu -28 282 1 2206 103 14 0 chr1 14150662 14150952 -228513401 - AluSg SINE Alu -16 294 1 494 238 82 0 chr1 14151128 14151250 -228513103 + L2 LINE L2 3140 3271 -1 23 0 0 0 chr1 14152141 14152164 -228512189 + AT_rich Low_complexity Low_complexity 1 23 0 2424 93 0 0 chr1 14152600 14152901 -228511452 - AluSq SINE Alu -12 301 1 1587 103 0 19 chr1 14153429 14153643 -228510710 - AluSg/x SINE Alu -12 298 89 467 157 157 0 chr1 14153716 14153805 -228510548 + FLAM_A SINE Alu 23 125 -17 262 348 140 24 chr1 14158390 14158554 -228505799 + MER5A DNA MER1_type 7 189 0 2113 104 31 0 chr1 14159113 14159402 -228504951 - AluSp SINE Alu -15 298 1 2302 119 0 0 chr1 14159433 14159745 -228504608 + AluSx SINE Alu 1 312 0 633 231 0 0 chr1 14161743 14161860 -228502493 + FLAM_C SINE Alu 2 118 -15 1627 187 27 23 chr1 14161940 14162106 -228502247 - AluJb SINE Alu -11 301 132 2454 91 0 3 chr1 14162106 14162413 -228501940 - AluSx SINE Alu -6 306 1 1627 187 27 23 chr1 14162413 14162546 -228501807 - AluJb SINE Alu -180 132 1 1797 176 7 19 chr1 14163201 14163508 -228500845 - AluJb SINE Alu -5 307 5 269 199 0 2 chr1 14164086 14164322 -228500031 + AluJo SINE Alu 1 291 -11 26 30 0 0 chr1 14164322 14164355 -228499998 + AT_rich Low_complexity Low_complexity 1 33 0 689 169 42 49 chr1 14164446 14164588 -228499765 + AluJb SINE Alu 141 281 -31 293 0 27 0 chr1 14164592 14164629 -228499724 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 1921 116 10 58 chr1 14164864 14165028 -228499325 - AluSx SINE Alu -16 296 153 2501 80 0 6 chr1 14165028 14165341 -228499012 - AluY SINE Alu 0 311 1 1921 116 10 58 chr1 14165341 14165487 -228498866 - AluSx SINE Alu -159 153 1 1711 142 59 31 chr1 14165535 14165824 -228498529 + AluJo SINE Alu 11 307 -5 1895 111 0 0 chr1 14166264 14166508 -228497845 + AluSx SINE Alu 1 244 -68 2320 68 4 0 chr1 14166730 14167036 -228497317 + AluY SINE Alu 1 307 0 1599 171 73 11 chr1 14167144 14167419 -228496934 - AluJo SINE Alu -19 293 2 251 191 0 0 chr1 14167471 14167513 -228496840 + 5S rRNA rRNA 1 42 -79 2161 120 0 0 chr1 14168211 14168494 -228495859 - AluSp SINE Alu -30 283 1 2156 126 7 0 chr1 14168500 14168801 -228495552 - AluSx SINE Alu -9 303 1 801 153 0 8 chr1 14168807 14168931 -228495422 - FLAM_C SINE Alu -19 124 2 597 117 11 0 chr1 14169027 14169121 -228495232 - FLAM_C SINE Alu -6 137 43 323 285 73 7 chr1 14169379 14169530 -228494823 - L1M4 LINE L1 -1497 4649 4489 1749 176 0 10 chr1 14169910 14170199 -228494154 - AluSx SINE Alu -22 290 5 270 252 47 19 chr1 14170300 14170407 -228493946 + L1ME4a LINE L1 5577 5686 -435 2294 119 0 3 chr1 14170434 14170746 -228493607 + AluSx SINE Alu 1 311 -1 301 320 45 0 chr1 14170917 14171073 -228493280 + L1ME4a LINE L1 5959 6121 0 740 249 97 62 chr1 14171083 14171179 -228493174 + HAL1 LINE L1 4 95 -2412 2515 80 0 0 chr1 14171179 14171478 -228492875 - AluSq SINE Alu -14 299 1 740 249 97 62 chr1 14171478 14171918 -228492435 + HAL1 LINE L1 95 610 -1897 1769 224 147 55 chr1 14171920 14171998 -228492355 + HAL1 LINE L1 745 814 -1693 1671 178 17 13 chr1 14171998 14172296 -228492057 - AluJo SINE Alu -13 299 1 1769 224 147 55 chr1 14172296 14172691 -228491662 + HAL1 LINE L1 814 1171 -1336 1955 111 17 20 chr1 14172691 14172988 -228491365 + AluSx SINE Alu 1 296 -16 2739 39 0 0 chr1 14172990 14173301 -228491052 + AluY SINE Alu 1 311 0 1769 224 147 55 chr1 14173301 14173982 -228490371 + HAL1 LINE L1 1171 2386 -121 1443 117 0 69 chr1 14174716 14174801 -228489552 - AluSx SINE Alu -97 215 126 2415 78 7 0 chr1 14174801 14175096 -228489257 - AluY SINE Alu -13 298 2 1443 117 0 69 chr1 14175096 14175241 -228489112 - AluSx SINE Alu -186 126 1 688 186 26 0 chr1 14175270 14175383 -228488970 + FLAM_C SINE Alu 1 116 -17 2370 109 0 0 chr1 14175897 14176210 -228488143 - AluSq SINE Alu 0 313 1 1994 152 3 3 chr1 14176397 14176693 -228487660 - AluSx SINE Alu -16 296 1 304 333 94 7 chr1 14177371 14177516 -228486837 + MIR SINE MIR 9 167 -41 * 409 279 25 62 chr1 14177508 14177669 -228486684 + MIR SINE MIR 105 259 -3 1757 143 13 58 chr1 14177850 14178158 -228486195 - AluJb SINE Alu -18 294 1 1249 187 27 0 chr1 14178183 14178402 -228485951 + AluJo SINE Alu 65 289 -23 1885 119 4 4 chr1 14179092 14179352 -228485001 + AluSx SINE Alu 45 304 -8 2130 98 31 0 chr1 14180215 14180502 -228483851 + AluSx SINE Alu 1 296 -16 681 127 0 134 chr1 14180509 14180643 -228483710 + AluJb SINE Alu 2 117 -195 603 244 0 42 chr1 14180946 14181114 -228483239 + MER58A DNA MER1_type 47 207 -17 1602 165 50 0 chr1 14181123 14181383 -228482970 + AluJb SINE Alu 1 273 -39 1472 170 64 14 chr1 14181463 14181746 -228482607 + AluJb SINE Alu 3 299 -13 2165 100 4 0 chr1 14182178 14182458 -228481895 + AluSx SINE Alu 1 281 -31 1734 143 81 7 chr1 14182633 14182905 -228481448 - AluJo SINE Alu -10 302 11 360 213 27 0 chr1 14182952 14183027 -228481326 + AluS SINE Alu 1 77 -226 1913 171 10 7 chr1 14183051 14183360 -228480993 + AluJb SINE Alu 1 310 -2 412 325 17 8 chr1 14183654 14183771 -228480582 - MER5B DNA MER1_type -60 118 1 1925 136 3 51 chr1 14184654 14184970 -228479383 + AluJo SINE Alu 1 301 -11 2007 87 4 4 chr1 14185336 14185589 -228478764 - AluSq SINE Alu -17 296 44 958 230 68 32 chr1 14185713 14185779 -228478574 + L1ME2 LINE L1 5824 5886 -278 2371 94 0 0 chr1 14185779 14186077 -228478276 + AluSg SINE Alu 1 298 -12 958 230 68 32 chr1 14186077 14186319 -228478034 + L1ME2 LINE L1 5886 6143 -21 904 191 0 0 chr1 14186467 14186614 -228477739 + AluJo SINE Alu 1 147 -165 2480 84 0 0 chr1 14186740 14187049 -228477304 + AluY SINE Alu 1 309 -2 2380 108 0 0 chr1 14187851 14188156 -228476197 + AluSq SINE Alu 1 305 -8 2407 96 0 3 chr1 14188268 14188569 -228475784 - AluSx SINE Alu -12 300 1 1101 173 103 15 chr1 14188908 14189179 -228475174 + L1MB7 LINE L1 5890 6184 0 584 310 109 21 chr1 14190797 14191036 -228473317 - MIR SINE MIR 0 262 3 467 259 273 24 chr1 14191258 14191749 -228472604 + L2 LINE L2 2676 3313 0 2051 106 22 0 chr1 14191966 14192239 -228472114 + AluSg SINE Alu 1 279 -31 359 228 93 62 chr1 14192563 14192725 -228471628 + MIR3 SINE MIR 42 208 0 359 206 0 0 chr1 14192990 14193053 -228471300 + AluJo SINE Alu 6 68 -234 674 98 130 0 chr1 14193053 14193176 -228471177 + MER85 DNA T2_type 1 139 0 1450 152 16 28 chr1 14193177 14193427 -228470926 + AluJo SINE Alu 65 311 -1 2047 80 40 14 chr1 14193808 14194104 -228470249 - AluY SINE Alu 0 303 1 1718 186 61 3 chr1 14194181 14194299 -228470054 + AluJo SINE Alu 1 111 -201 234 0 0 0 chr1 14194299 14194325 -228470028 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1718 186 61 3 chr1 14194325 14194501 -228469852 + AluJo SINE Alu 111 312 0 746 232 212 8 chr1 14195559 14195809 -228468544 + AluYa5 SINE Alu 1 301 0 426 307 53 13 chr1 14195960 14196185 -228468168 + L1ME LINE L1 5585 5818 -303 1696 192 26 3 chr1 14196197 14196499 -228467854 + AluJb SINE Alu 1 309 -3 227 171 0 100 chr1 14196969 14197039 -228467314 + Charlie7 DNA MER1_type 40 102 -2510 260 237 158 9 chr1 14197150 14197264 -228467089 + Charlie7 DNA MER1_type 2482 2612 0 2313 65 55 0 chr1 14198134 14198427 -228465926 + AluY SINE Alu 1 309 -2 2376 89 0 16 chr1 14198459 14198772 -228465581 + AluSx SINE Alu 3 310 -2 233 116 0 23 chr1 14200212 14200255 -228464098 + (CCCGG)n Simple_repeat Simple_repeat 1 42 0 33 0 0 0 chr1 14200458 14200491 -228463862 + GC_rich Low_complexity Low_complexity 1 33 0 181 213 0 40 chr1 14200556 14200631 -228463722 + GA-rich Low_complexity Low_complexity 1 72 0 398 268 142 0 chr1 14200731 14200858 -228463495 - L2 LINE L2 0 3313 3169 254 245 10 88 chr1 14201098 14201200 -228463153 + L2 LINE L2 3176 3269 -3 2494 79 0 0 chr1 14201485 14201789 -228462564 + AluSg SINE Alu 1 304 -6 283 272 88 29 chr1 14201804 14201940 -228462413 - MLT1L LTR MaLR -6 609 466 305 167 114 97 chr1 14202009 14202123 -228462230 - MLT1J LTR MaLR -285 226 111 520 222 18 0 chr1 14202364 14202491 -228461862 + MLT1G1 LTR MaLR 3 87 -468 1428 156 18 0 chr1 14202527 14202745 -228461608 - AluJo SINE Alu -4 308 87 724 195 0 0 chr1 14202792 14202910 -228461443 - FLAM_C SINE Alu -15 118 1 2470 94 0 7 chr1 14203380 14203689 -228460664 + AluSq SINE Alu 1 307 -6 2428 89 0 22 chr1 14203689 14204004 -228460349 + AluSg SINE Alu 1 308 -2 30 27 0 0 chr1 14204224 14204261 -228460092 + AT_rich Low_complexity Low_complexity 1 37 0 830 144 0 0 chr1 14204375 14204493 -228459860 + FLAM_C SINE Alu 11 128 -15 1048 143 12 0 chr1 14204512 14204673 -228459680 - AluSg/x SINE Alu -16 294 132 2174 134 3 0 chr1 14204673 14204979 -228459374 - AluSx SINE Alu -5 307 1 2132 129 0 0 chr1 14204988 14205283 -228459070 - AluSq SINE Alu -18 295 1 839 191 31 25 chr1 14205293 14205455 -228458898 + AluJb SINE Alu 129 291 -21 2254 111 0 3 chr1 14205464 14205761 -228458592 + AluSg SINE Alu 1 296 -14 2134 123 10 0 chr1 14206071 14206364 -228457989 + AluSx SINE Alu 1 296 -16 1828 109 41 17 chr1 14207230 14207524 -228456829 - AluSg SINE Alu -7 303 3 1949 43 51 0 chr1 14207538 14207772 -228456581 - AluY SINE Alu -6 305 60 1158 39 0 0 chr1 14207772 14207899 -228456454 - AluY SINE Alu -176 135 9 1912 148 0 0 chr1 14207907 14208197 -228456156 - AluSc SINE Alu -19 290 1 483 231 0 0 chr1 14208460 14208568 -228455785 - FLAM_A SINE Alu -15 127 20 1138 64 0 0 chr1 14208585 14208725 -228455628 - AluY SINE Alu -3 308 169 1133 274 16 5 chr1 14208768 14209144 -228455209 - L1 LINE L1 -2541 3605 3226 2150 114 0 10 chr1 14210231 14210528 -228453825 - AluSg SINE Alu -16 294 1 639 144 29 0 chr1 14211860 14211964 -228452389 + AluJb SINE Alu 85 191 -121 31 0 0 0 chr1 14214148 14214179 -228450174 + AT_rich Low_complexity Low_complexity 1 31 0 1265 137 5 61 chr1 14214283 14214350 -228450003 - AluSq SINE Alu -113 200 131 2293 102 0 3 chr1 14214350 14214654 -228449699 - AluSg SINE Alu -7 303 1 1265 137 5 61 chr1 14214654 14214798 -228449555 - AluSq SINE Alu -182 131 1 2538 78 3 0 chr1 14214802 14215108 -228449245 - AluSp SINE Alu -4 309 3 2383 89 0 0 chr1 14215189 14215481 -228448872 - AluSg SINE Alu -18 292 1 1411 183 82 4 chr1 14215487 14215755 -228448598 - AluJo SINE Alu -19 293 5 965 203 127 62 chr1 14216191 14216531 -228447822 + MLT1G3 LTR MaLR 128 489 -41 1151 119 0 35 chr1 14216533 14216602 -228447751 + L1MB8 LINE L1 5417 5487 -697 2088 132 3 28 chr1 14216602 14216738 -228447615 + AluSx SINE Alu 1 139 -173 2412 108 0 0 chr1 14216738 14217045 -228447308 + AluSg SINE Alu 1 307 -3 2088 132 3 28 chr1 14217045 14217227 -228447126 + AluSx SINE Alu 139 311 -1 1151 119 0 35 chr1 14217227 14217358 -228446995 + L1MB8 LINE L1 5487 5610 -574 779 156 23 0 chr1 14217362 14217490 -228446863 + FLAM_C SINE Alu 6 136 -7 2198 140 0 0 chr1 14217498 14217806 -228446547 + AluSx SINE Alu 1 308 -4 1574 156 24 63 chr1 14217807 14218030 -228446323 + L1MB8 LINE L1 5599 5802 -376 352 68 14 176 chr1 14218030 14218063 -228446290 + U7 snRNA snRNA 2 18 -45 2434 94 0 3 chr1 14218063 14218372 -228445981 + AluSg SINE Alu 1 308 -2 352 68 14 176 chr1 14218372 14218412 -228445941 + U7 snRNA snRNA 18 63 0 1574 156 24 63 chr1 14218412 14218566 -228445787 + L1MB8 LINE L1 5802 5961 -217 26 0 0 0 chr1 14218567 14218593 -228445760 + AT_rich Low_complexity Low_complexity 1 26 0 2408 88 0 7 chr1 14218631 14218939 -228445414 - AluY SINE Alu -4 307 2 974 123 16 102 chr1 14218939 14219117 -228445236 + L1MB8 LINE L1 5955 6108 -70 2175 108 3 3 chr1 14219117 14219414 -228444939 - AluSx SINE Alu -15 297 1 974 123 16 102 chr1 14219414 14219479 -228444874 + L1MB8 LINE L1 6108 6177 -1 333 277 277 0 chr1 14219482 14219670 -228444683 - L2 LINE L2 -608 2706 2467 819 243 92 1 chr1 14220220 14220257 -228444096 - MIR SINE MIR -12 250 218 745 272 78 4 chr1 14220257 14220500 -228443853 - MIR SINE MIR 0 262 2 819 243 92 1 chr1 14220500 14220644 -228443709 - MIR SINE MIR -44 218 2 1232 123 6 0 chr1 14220680 14220859 -228443494 - AluSx SINE Alu -12 298 119 1051 88 15 0 chr1 14221649 14221786 -228442567 - AluSx SINE Alu -169 144 6 1634 104 69 9 chr1 14221918 14222149 -228442204 - AluSx SINE Alu -67 245 1 2106 71 32 74 chr1 14223155 14223466 -228440887 - AluSg1 SINE Alu -11 298 1 255 186 171 0 chr1 14223675 14223745 -228440608 - MER7A DNA MER2_type -1 335 254 1611 137 24 103 chr1 14223745 14224074 -228440279 - AluJo SINE Alu -4 308 6 858 180 0 13 chr1 14224077 14224227 -228440126 - AluJo SINE Alu -164 148 1 1583 132 22 22 chr1 14224227 14224499 -228439854 - MER7A DNA MER2_type -76 270 1 2426 68 0 0 chr1 14224568 14224860 -228439493 - AluSg SINE Alu -18 292 1 428 136 12 37 chr1 14224882 14224963 -228439390 - MER5A DNA MER1_type -83 106 28 2299 95 3 0 chr1 14225230 14225525 -228438828 + AluSq SINE Alu 1 296 -17 2102 110 7 3 chr1 14225534 14225824 -228438529 + AluSg SINE Alu 6 296 -14 2264 109 3 0 chr1 14225859 14226161 -228438192 + AluSx SINE Alu 2 304 -8 629 218 34 20 chr1 14226161 14226300 -228438053 - L1MEc LINE L1 -5726 670 527 1643 141 4 15 chr1 14226308 14226570 -228437783 + MER1B DNA MER1_type 1 259 -80 1520 229 42 42 chr1 14226596 14226901 -228437452 - L1MEc LINE L1 -5903 493 186 2395 72 0 0 chr1 14226901 14227193 -228437160 - AluSg SINE Alu -18 292 1 1520 229 42 42 chr1 14227193 14227345 -228437008 - L1MEc LINE L1 -6209 187 36 201 238 138 50 chr1 14227466 14227546 -228436807 + L2 LINE L2 3185 3271 -1 537 178 93 9 chr1 14227725 14227882 -228436471 + L1MB7 LINE L1 6017 6184 0 1819 133 0 4 chr1 14228030 14228312 -228436041 + AluSx SINE Alu 29 309 0 1341 198 88 53 chr1 14228596 14228649 -228435704 - MSTB1 LTR MaLR -19 413 363 2254 108 7 7 chr1 14228649 14228956 -228435397 + AluSx SINE Alu 1 307 -5 1341 198 88 53 chr1 14228956 14229301 -228435052 - MSTB1 LTR MaLR -69 363 1 1939 231 37 15 chr1 14229301 14229764 -228434589 - MER21B LTR ERV1 -136 727 255 2387 85 3 0 chr1 14230384 14230677 -228433676 + AluSg SINE Alu 1 294 -16 1859 142 3 27 chr1 14230987 14231320 -228433033 - AluSx SINE Alu 0 326 1 983 104 8 8 chr1 14231320 14231454 -228432899 - AluSq/x SINE Alu -178 135 2 2199 123 3 3 chr1 14231454 14231756 -228432597 - AluSx SINE Alu -10 302 1 2294 107 0 0 chr1 14231828 14232126 -228432227 - AluSx SINE Alu -14 298 1 236 67 0 0 chr1 14232126 14232156 -228432197 + MER31A LTR ERV1 3 32 -453 247 136 23 0 chr1 14232158 14232202 -228432151 + MER31A LTR ERV1 304 348 -137 877 215 45 41 chr1 14232202 14232722 -228431631 - MER4C LTR ERV1 0 587 1 646 164 31 16 chr1 14232722 14232846 -228431507 + MER31A LTR ERV1 345 470 -15 1225 162 13 40 chr1 14232847 14233075 -228431278 - AluJo SINE Alu -9 303 82 2380 104 0 13 chr1 14233086 14233402 -228430951 - AluSx SINE Alu 0 312 1 23 68 0 0 chr1 14234086 14234130 -228430223 + AT_rich Low_complexity Low_complexity 1 44 0 1263 117 0 11 chr1 14234130 14234310 -228430043 + AluSg/x SINE Alu 123 300 -12 657 168 0 9 chr1 14234326 14234433 -228429920 - AluJo SINE Alu -205 107 2 2223 101 0 17 chr1 14234474 14234652 -228429701 - AluSx SINE Alu 0 310 138 2393 104 3 0 chr1 14234652 14234950 -228429403 - AluSp SINE Alu -14 299 1 2223 101 0 17 chr1 14234950 14235084 -228429269 - AluSx SINE Alu -172 138 3 2392 103 0 6 chr1 14235307 14235619 -228428734 - AluSg SINE Alu 0 310 1 2351 82 0 55 chr1 14235625 14235953 -228428400 - AluSg SINE Alu 0 310 1 1863 162 0 29 chr1 14235962 14236271 -228428082 - AluJo SINE Alu -12 300 1 2109 122 3 0 chr1 14236278 14236572 -228427781 - AluSx SINE Alu -17 295 1 306 243 65 47 chr1 14236585 14236692 -228427661 - MER5A DNA MER1_type -80 109 1 467 144 7 122 chr1 14236701 14236766 -228427587 - Charlie1a DNA MER1_type -1307 1454 1412 1694 142 20 33 chr1 14236766 14237068 -228427285 + AluJo SINE Alu 1 298 -14 467 144 7 122 chr1 14237068 14237141 -228427212 - Charlie1a DNA MER1_type -1349 1412 1332 632 231 0 17 chr1 14237168 14237285 -228427068 + AluJo SINE Alu 2 116 -196 809 168 7 7 chr1 14237285 14237422 -228426931 - AluJb SINE Alu -10 302 166 3416 132 87 19 chr1 14237422 14238183 -228426170 + LTR12 LTR ERV1 1 714 0 1009 188 0 0 chr1 14238183 14238348 -228426005 - AluJb SINE Alu -143 169 5 1209 165 0 25 chr1 14238348 14238548 -228425805 + AluJo SINE Alu 101 295 -17 237 240 0 0 chr1 14239211 14239261 -228425092 + L2 LINE L2 3222 3271 -1 2371 71 10 3 chr1 14239549 14239843 -228424510 - AluY SINE Alu -15 296 1 2440 57 0 0 chr1 14240081 14240407 -228423946 - AluY SINE Alu 0 326 1 1118 131 0 0 chr1 14240449 14240602 -228423751 + FRAM SINE Alu 1 153 -13 203 133 0 0 chr1 14240602 14240632 -228423721 + (CTAG)n Simple_repeat Simple_repeat 1 30 0 862 105 40 8 chr1 14240772 14240896 -228423457 + AluJo SINE Alu 9 136 -176 27 29 0 0 chr1 14241232 14241266 -228423087 + GC_rich Low_complexity Low_complexity 1 34 0 2254 72 7 33 chr1 14241726 14242031 -228422322 + AluSg SINE Alu 1 297 -13 340 299 219 0 chr1 14242333 14242470 -228421883 - MIR SINE MIR -1 261 95 900 187 106 0 chr1 14242519 14242717 -228421636 + MER20 DNA MER1_type 1 219 0 186 43 0 0 chr1 14243157 14243180 -228421173 + (TG)n Simple_repeat Simple_repeat 1 23 0 2194 102 0 0 chr1 14243184 14243459 -228420894 - AluSx SINE Alu -37 275 1 345 280 88 96 chr1 14243673 14243886 -228420467 + MIR SINE MIR 4 216 -46 2523 80 10 0 chr1 14243886 14244188 -228420165 - AluSq SINE Alu -8 305 1 345 280 88 96 chr1 14244188 14244235 -228420118 + MIR SINE MIR 216 262 0 954 134 89 59 chr1 14244259 14244306 -228420047 - MER3 DNA MER1_type 0 209 165 2023 91 80 4 chr1 14244306 14244582 -228419771 - AluSq SINE Alu -16 297 1 954 134 89 59 chr1 14244582 14244736 -228419617 - MER3 DNA MER1_type -44 165 2 1566 198 51 3 chr1 14244801 14245094 -228419259 - AluJo SINE Alu -5 307 1 501 110 0 0 chr1 14245096 14245169 -228419184 - FLAM_A SINE Alu -8 134 62 2383 100 3 0 chr1 14245171 14245480 -228418873 - AluSp SINE Alu -2 311 2 693 107 39 29 chr1 14245490 14245593 -228418760 - AluJb SINE Alu -23 289 186 2404 106 3 0 chr1 14245670 14245973 -228418380 + AluSx SINE Alu 1 304 -8 2472 88 0 0 chr1 14247580 14247877 -228416476 + AluSx SINE Alu 1 297 -15 313 310 152 6 chr1 14248107 14248278 -228416075 + MIR SINE MIR 58 253 -9 2460 81 0 0 chr1 14248585 14248882 -228415471 - AluSg SINE Alu -13 297 1 2506 83 0 3 chr1 14249125 14249437 -228414916 + AluY SINE Alu 1 311 0 2271 100 0 0 chr1 14249447 14249737 -228414616 + AluSg SINE Alu 1 290 -20 2231 87 17 23 chr1 14249770 14250069 -228414284 + AluSp SINE Alu 1 297 -16 1632 156 25 21 chr1 14250119 14250445 -228413908 + AluJb SINE Alu 1 327 0 435 212 85 42 chr1 14250560 14250678 -228413675 + L2 LINE L2 3190 3312 -1 252 299 245 31 chr1 14250872 14251227 -228413126 + L2 LINE L2 2837 3267 -5 2309 104 3 3 chr1 14251497 14251796 -228412557 + AluSx SINE Alu 1 299 -13 199 265 10 78 chr1 14251858 14251960 -228412393 - MIR SINE MIR -43 219 125 2326 92 7 3 chr1 14252906 14253199 -228411154 - AluSq SINE Alu -19 294 1 643 92 0 0 chr1 14253268 14253355 -228410998 + AluSg/x SINE Alu 214 300 -12 2410 105 0 0 chr1 14253515 14253821 -228410532 + AluSx SINE Alu 1 306 -6 829 57 98 16 chr1 14253824 14253946 -228410407 + AluSq/x SINE Alu 1 132 -180 1816 77 0 0 chr1 14254009 14254229 -228410124 - AluSg/x SINE Alu -8 304 85 850 173 0 0 chr1 14255670 14255803 -228408550 + FLAM_C SINE Alu 6 138 -5 2357 90 3 31 chr1 14256226 14256548 -228407805 + AluSp SINE Alu 1 313 0 186 133 0 0 chr1 14258869 14258899 -228405454 + (CA)n Simple_repeat Simple_repeat 1 30 0 1990 144 3 7 chr1 14259276 14259575 -228404778 - AluJo SINE Alu -14 298 1 203 290 70 70 chr1 14260738 14260838 -228403515 - L2 LINE L2 -32 3240 3141 272 316 31 0 chr1 14260864 14260962 -228403391 - L2 LINE L2 0 3272 3172 2417 102 0 0 chr1 14261041 14261346 -228403007 + AluSx SINE Alu 1 305 -7 2192 101 47 3 chr1 14261349 14261647 -228402706 + AluSq SINE Alu 3 313 0 2167 86 6 71 chr1 14262304 14262630 -228401723 - AluY SINE Alu -6 305 1 2123 132 3 3 chr1 14262633 14262929 -228401424 - AluSq SINE Alu -17 296 1 2040 134 19 10 chr1 14263394 14263701 -228400652 + AluJb SINE Alu 1 310 -2 35 54 0 0 chr1 14264265 14264321 -228400032 + AT_rich Low_complexity Low_complexity 1 56 0 667 163 0 0 chr1 14264329 14264427 -228399926 - AluJ/FLAM SINE Alu -211 101 4 2212 114 3 7 chr1 14264474 14264773 -228399580 - AluSx SINE Alu -14 298 1 633 257 257 39 chr1 14264908 14265239 -228399114 - L2 LINE L2 0 3313 2911 613 289 23 28 chr1 14265226 14265444 -228398909 - L2 LINE L2 -584 2730 2514 * 328 246 14 0 chr1 14265926 14265995 -228398358 + L2 LINE L2 2985 3054 -218 2544 70 3 0 chr1 14266092 14266394 -228397959 - AluSp SINE Alu -10 303 1 2189 117 0 0 chr1 14266938 14267255 -228397098 + AluSg SINE Alu 1 317 0 498 248 90 67 chr1 14267419 14267544 -228396809 + L1ME3A LINE L1 2757 2878 -3268 704 200 0 15 chr1 14267544 14267679 -228396674 + AluJo SINE Alu 1 133 -169 1928 159 0 19 chr1 14267689 14268003 -228396350 + AluJo SINE Alu 1 308 -4 1555 142 161 0 chr1 14268004 14268265 -228396088 + AluSq SINE Alu 1 303 0 498 248 90 67 chr1 14268265 14268278 -228396075 + L1ME3A LINE L1 2886 2897 -3249 982 179 12 0 chr1 14268278 14268440 -228395913 + AluJo SINE Alu 137 300 -2 498 248 90 67 chr1 14268440 14268852 -228395501 + L1ME3A LINE L1 2897 3334 -2812 1280 275 46 46 chr1 14269014 14269651 -228394702 + L1ME3A LINE L1 3679 4320 -1826 1907 93 52 11 chr1 14269651 14269922 -228394431 + AluSx SINE Alu 1 314 0 289 0 0 0 chr1 14269922 14269954 -228394399 + (CAAAA)n Simple_repeat Simple_repeat 2 110 0 1280 275 46 46 chr1 14269954 14269982 -228394371 + L1ME3A LINE L1 4319 4346 -1800 21 0 0 0 chr1 14270025 14270046 -228394307 + AT_rich Low_complexity Low_complexity 1 21 0 692 159 84 0 chr1 14270046 14270153 -228394200 - FLAM_C SINE Alu -16 117 2 2420 88 3 13 chr1 14270163 14270469 -228393884 - AluSp SINE Alu -10 303 1 2423 87 3 0 chr1 14270474 14270772 -228393581 - AluSg SINE Alu -11 299 1 1988 127 7 39 chr1 14270774 14271081 -228393272 - AluSx SINE Alu -15 297 1 274 262 66 11 chr1 14271121 14271304 -228393049 + L1ME3A LINE L1 4361 4553 -1593 320 226 48 110 chr1 14271393 14271539 -228392814 + L1ME3A LINE L1 4548 4684 -1462 1512 216 52 38 chr1 14271817 14271951 -228392402 + L1ME3A LINE L1 5668 5799 -371 2114 142 3 0 chr1 14271951 14272253 -228392100 - AluJb SINE Alu -9 303 1 1512 216 52 38 chr1 14272253 14272614 -228391739 + L1ME3A LINE L1 5799 6170 0 337 197 42 92 chr1 14272620 14272641 -228391712 + L1ME3A LINE L1 5184 5204 -967 2456 91 3 0 chr1 14272641 14272950 -228391403 + AluSq SINE Alu 1 310 -3 337 197 42 92 chr1 14272950 14273105 -228391248 + L1ME3A LINE L1 5204 5356 -815 2296 109 0 6 chr1 14273105 14273417 -228390936 + AluSx SINE Alu 1 310 -2 337 197 42 92 chr1 14273417 14273445 -228390908 + L1ME3A LINE L1 5356 5384 -787 232 174 0 0 chr1 14273510 14273556 -228390797 + A-rich Low_complexity Low_complexity 1 46 0 2926 193 106 61 chr1 14273565 14273675 -228390678 - Charlie1a DNA MER1_type -1884 877 773 2252 99 3 14 chr1 14273675 14273969 -228390384 - AluSg SINE Alu -19 291 1 2926 193 106 61 chr1 14273969 14274003 -228390350 - Charlie1a DNA MER1_type -1988 773 742 1815 132 25 65 chr1 14274003 14274133 -228390220 + AluJb SINE Alu 1 135 -177 1831 118 16 0 chr1 14274133 14274379 -228389974 - AluSx SINE Alu -17 295 46 1815 132 25 65 chr1 14274379 14274573 -228389780 + AluJb SINE Alu 135 312 0 2926 193 106 61 chr1 14274573 14275005 -228389348 - Charlie1a DNA MER1_type -2019 742 248 2405 92 0 0 chr1 14275005 14275308 -228389045 + AluSx SINE Alu 1 303 -9 2926 193 106 61 chr1 14275308 14275568 -228388785 - Charlie1a DNA MER1_type -2513 248 1 319 293 81 0 chr1 14275625 14275724 -228388629 + L1ME3A LINE L1 5740 5846 -324 1653 125 49 40 chr1 14276103 14276336 -228388017 - MER44D DNA MER2_type -1882 609 380 2627 42 0 13 chr1 14276336 14276642 -228387711 - AluY SINE Alu -9 302 1 1653 125 49 40 chr1 14276642 14276737 -228387616 - MER44D DNA MER2_type -2111 380 8 496 323 22 35 chr1 14276771 14276997 -228387356 + L2 LINE L2 2184 2406 -908 334 250 136 108 chr1 14277183 14277507 -228386846 - L1M4 LINE L1 -823 5323 4991 22 56 0 0 chr1 14277550 14277586 -228386767 + AT_rich Low_complexity Low_complexity 1 36 0 532 243 86 63 chr1 14278328 14278433 -228385920 + MIR SINE MIR 32 133 -129 2177 121 3 0 chr1 14278433 14278730 -228385623 + AluSx SINE Alu 1 298 -14 2275 98 0 10 chr1 14278736 14279032 -228385321 + AluSg SINE Alu 8 300 -10 532 243 86 63 chr1 14279032 14279141 -228385212 + MIR SINE MIR 137 258 -4 267 103 0 0 chr1 14279240 14279279 -228385074 + (A)n Simple_repeat Simple_repeat 1 39 0 326 23 23 0 chr1 14279753 14279796 -228384557 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1857 164 0 30 chr1 14279853 14280152 -228384201 - AluJb SINE Alu -22 290 1 421 282 51 62 chr1 14280336 14280531 -228383822 + L2 LINE L2 2665 2857 -457 185 263 0 0 chr1 14280599 14280637 -228383716 + L2 LINE L2 3018 3055 -217 311 209 58 70 chr1 14281015 14281101 -228383252 - L1ME3A LINE L1 -247 5923 5839 244 238 88 0 chr1 14281908 14281988 -228382365 + L1ME LINE L1 5519 5605 -516 321 26 0 0 chr1 14281988 14282026 -228382327 + (TG)n Simple_repeat Simple_repeat 1 38 0 2419 268 70 15 chr1 14282176 14283123 -228381230 + L2 LINE L2 2302 3293 -20 853 138 0 0 chr1 14283244 14283360 -228380993 - FLAM_A SINE Alu -17 116 1 1956 196 56 5 chr1 14283411 14283825 -228380528 - MER21B LTR ERV1 -112 751 317 915 234 173 0 chr1 14284018 14284266 -228380087 - MER21B LTR ERV1 -553 310 20 338 226 0 60 chr1 14284289 14284373 -228379980 - MER21B LTR ERV1 -773 90 12 258 156 25 188 chr1 14284388 14284548 -228379805 - L1ME3A LINE L1 -373 5748 5615 513 247 60 67 chr1 14284639 14284789 -228379564 - MIR3 SINE MIR -23 185 37 363 315 163 20 chr1 14285013 14285216 -228379137 - MIR SINE MIR -12 250 19 622 144 0 0 chr1 14285439 14285529 -228378824 + AluJ/FLAM SINE Alu 2 91 -221 546 249 52 10 chr1 14285552 14285701 -228378652 - MIR SINE MIR -34 174 17 318 219 55 0 chr1 14285710 14285783 -228378570 + AluSc SINE Alu 117 193 -106 2382 112 0 0 chr1 14285826 14286131 -228378222 - AluSx SINE Alu -7 305 1 2189 125 3 0 chr1 14286133 14286429 -228377924 - AluSx SINE Alu -15 297 1 844 211 33 0 chr1 14286477 14286629 -228377724 + AluJb SINE Alu 148 304 -8 2586 61 0 3 chr1 14286629 14286941 -228377412 + AluY SINE Alu 1 311 0 2188 118 7 0 chr1 14287443 14287739 -228376614 - AluSx SINE Alu -14 298 1 2466 88 0 0 chr1 14287754 14288059 -228376294 - AluSg SINE Alu -4 306 2 692 284 96 4 chr1 14288300 14288539 -228375814 + MIR SINE MIR 2 262 0 2252 119 0 0 chr1 14289024 14289318 -228375035 + AluSx SINE Alu 1 294 -18 2530 73 0 19 chr1 14289795 14290112 -228374241 + AluSp SINE Alu 1 311 -2 1010 178 15 35 chr1 14290148 14290350 -228374003 + AluJo SINE Alu 40 237 -75 245 146 36 0 chr1 14290451 14290506 -228373847 + (CGG)n Simple_repeat Simple_repeat 3 59 0 28 105 0 0 chr1 14290605 14290710 -228373643 + GC_rich Low_complexity Low_complexity 1 105 0 29 0 0 0 chr1 14291340 14291369 -228372984 + AT_rich Low_complexity Low_complexity 1 29 0 294 143 0 0 chr1 14291491 14291540 -228372813 + (A)n Simple_repeat Simple_repeat 1 49 0 682 226 20 7 chr1 14292252 14292398 -228371955 + MIR SINE MIR 8 155 -107 2201 106 0 26 chr1 14292413 14292598 -228371755 - AluSx SINE Alu 0 312 142 2406 73 0 7 chr1 14292598 14292898 -228371455 - AluY SINE Alu -12 299 2 2201 106 0 26 chr1 14292898 14293037 -228371316 - AluSx SINE Alu -170 142 1 282 102 0 20 chr1 14293039 14293088 -228371265 - AluSp SINE Alu -170 133 86 2393 63 0 26 chr1 14293104 14293406 -228370947 - AluY SINE Alu 0 311 18 761 243 32 0 chr1 14293925 14294114 -228370239 - L1ME3A LINE L1 -5 6165 5971 2271 112 7 0 chr1 14294319 14294622 -228369731 + AluSx SINE Alu 1 305 -7 2399 91 13 0 chr1 14294916 14295223 -228369130 + AluSp SINE Alu 1 311 -2 2352 99 3 0 chr1 14295703 14296005 -228368348 - AluSq SINE Alu -10 303 1 2021 128 40 0 chr1 14296009 14296306 -228368047 - AluSx SINE Alu -3 309 1 746 195 167 0 chr1 14296348 14296522 -228367831 - MER58A DNA MER1_type -12 212 10 610 262 100 30 chr1 14296697 14296968 -228367385 - L2 LINE L2 0 3313 3024 1956 162 3 10 chr1 14297013 14297321 -228367032 - AluJo SINE Alu -6 306 1 1930 133 3 43 chr1 14297780 14298080 -228366273 + AluJo SINE Alu 5 292 -20 718 188 8 0 chr1 14298554 14298682 -228365671 - FLAM_C SINE Alu -10 133 5 2184 119 10 0 chr1 14298695 14298988 -228365365 - AluSq SINE Alu -17 296 1 2317 105 0 0 chr1 14298992 14299288 -228365065 - AluSx SINE Alu -14 298 3 2290 98 11 0 chr1 14300021 14300339 -228364014 + AluSg SINE Alu 1 321 0 2300 125 0 0 chr1 14300696 14301007 -228363346 - AluSx SINE Alu -1 311 1 310 281 134 80 chr1 14301371 14301464 -228362889 - MIR SINE MIR -14 248 161 2072 97 38 14 chr1 14301464 14301753 -228362600 - AluSq SINE Alu -17 296 1 1861 140 3 43 chr1 14301759 14302059 -228362294 - AluJb SINE Alu -20 292 5 310 281 134 80 chr1 14302059 14302182 -228362171 - MIR SINE MIR -105 157 13 2541 74 0 3 chr1 14302289 14302598 -228361755 - AluSq SINE Alu -3 310 3 519 273 15 0 chr1 14302600 14302732 -228361621 - L2 LINE L2 -13 3300 3167 1022 129 177 38 chr1 14303619 14303805 -228360548 - AluJo SINE Alu -18 294 83 1910 144 26 10 chr1 14304148 14304454 -228359899 - AluJo SINE Alu -1 311 1 2286 122 6 3 chr1 14304487 14304798 -228359555 - AluSx SINE Alu 0 312 1 872 129 0 0 chr1 14304992 14305108 -228359245 + FLAM_C SINE Alu 1 116 -17 182 37 37 0 chr1 14305108 14305135 -228359218 + (TTA)n Simple_repeat Simple_repeat 2 29 0 3745 47 0 43 chr1 14305135 14305621 -228358732 - L1PA6 LINE L1 -14 6140 5676 21 0 0 0 chr1 14305630 14305651 -228358702 + AT_rich Low_complexity Low_complexity 1 21 0 1467 141 0 107 chr1 14305676 14305966 -228358387 + AluJo SINE Alu 50 308 -4 315 146 0 8 chr1 14306187 14306255 -228358098 - Alu SINE Alu 0 302 247 219 245 38 19 chr1 14306415 14306468 -228357885 + MIR3 SINE MIR 110 163 -45 2308 84 10 7 chr1 14306781 14307079 -228357274 + AluSq SINE Alu 1 299 -14 2431 97 0 3 chr1 14307099 14307408 -228356945 + AluSq SINE Alu 1 308 -5 2454 66 0 7 chr1 14307457 14307758 -228356595 + AluY SINE Alu 1 299 -12 2326 116 0 7 chr1 14308365 14308667 -228355686 - AluSx SINE Alu -12 300 1 1926 147 3 32 chr1 14308667 14308979 -228355374 - AluJo SINE Alu -9 303 1 228 288 50 12 chr1 14310164 14310244 -228354109 + L2 LINE L2 1742 1824 -1490 240 143 0 0 chr1 14310244 14310286 -228354067 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 418 181 188 31 chr1 14310400 14310560 -228353793 - L1MC5 LINE L1 -173 7788 7604 297 296 31 0 chr1 14310731 14310829 -228353524 + L2 LINE L2 1979 2079 -1235 398 316 34 0 chr1 14310833 14310950 -228353403 - MER5B DNA MER1_type 0 178 58 732 284 134 65 chr1 14311056 14311120 -228353233 + L2 LINE L2 2258 2316 -998 2015 148 6 13 chr1 14311120 14311431 -228352922 - AluSx SINE Alu -3 309 1 732 284 134 65 chr1 14311431 14311759 -228352594 + L2 LINE L2 2316 2697 -617 1862 139 38 0 chr1 14311759 14312046 -228352307 + AluJb SINE Alu 1 298 -14 732 284 134 65 chr1 14312046 14312173 -228352180 + L2 LINE L2 2697 2814 -500 1788 105 4 8 chr1 14362173 14362411 -228301942 - AluSx SINE Alu -75 237 1 691 228 76 38 chr1 14362471 14362682 -228301671 + MER20 DNA MER1_type 1 219 0 2235 123 0 0 chr1 14362979 14363279 -228301074 + AluSx SINE Alu 1 300 -12 2405 97 3 0 chr1 14363325 14363634 -228300719 - AluSg SINE Alu 0 310 1 213 297 54 14 chr1 14363837 14363911 -228300442 + MIR SINE MIR 30 106 -102 209 302 86 8 chr1 14364063 14364185 -228300168 + MIR3 SINE MIR 68 185 -28 1798 116 95 7 chr1 14364190 14364475 -228299878 - AluSx SINE Alu -2 310 1 278 239 312 36 chr1 14364615 14364753 -228299600 + MER5A DNA MER1_type 14 189 0 * 293 337 45 39 chr1 14364753 14364902 -228299451 + MIR SINE MIR 94 243 -19 981 153 169 0 chr1 14364988 14365171 -228299182 - MER58A DNA MER1_type -1 223 10 2395 80 0 3 chr1 14365552 14365841 -228298512 + AluSq SINE Alu 3 290 -23 302 198 172 26 chr1 14365959 14366075 -228298278 - MIR3 SINE MIR -65 143 11 250 191 79 0 chr1 14366114 14366177 -228298176 + MLT1H LTR MaLR 1 68 -481 300 286 91 32 chr1 14366242 14366396 -228297957 + MLT1H LTR MaLR 374 536 -13 868 220 84 18 chr1 14366601 14366828 -228297525 + MIR SINE MIR 13 254 -8 2429 176 50 8 chr1 14367142 14367618 -228296735 - MLT1D LTR MaLR -9 496 1 2201 92 10 23 chr1 14367681 14367984 -228296369 - AluSq SINE Alu -14 299 1 2062 152 3 0 chr1 14368056 14368365 -228295988 - AluJo SINE Alu -2 310 1 400 350 49 21 chr1 14368452 14368778 -228295575 + L2 LINE L2 2520 2854 -460 556 172 50 0 chr1 14368785 14368884 -228295469 - MER81 DNA DNA -9 105 2 331 181 14 14 chr1 14369147 14369219 -228295134 - MLT1J LTR MaLR -204 307 236 22 0 0 0 chr1 14369256 14369278 -228295075 + AT_rich Low_complexity Low_complexity 1 22 0 1112 213 47 20 chr1 14369303 14369557 -228294796 + MIR SINE MIR 2 262 0 2243 94 0 41 chr1 14369697 14369842 -228294511 + AluSx SINE Alu 1 150 -162 2420 65 0 26 chr1 14369842 14370148 -228294205 + AluY SINE Alu 1 298 -13 2243 94 0 41 chr1 14370148 14370322 -228294031 + AluSx SINE Alu 150 307 -5 204 386 83 0 chr1 14370378 14370523 -228293830 + L2 LINE L2 2985 3141 -131 224 239 269 0 chr1 14371023 14371153 -228293200 + MIR3 SINE MIR 40 204 -4 200 298 91 41 chr1 14371161 14371282 -228293071 + L2 LINE L2 3178 3304 -9 190 318 16 63 chr1 14372262 14372388 -228291965 + L2 LINE L2 3194 3313 0 1044 161 0 3 chr1 14372406 14372690 -228291663 + (TGAA)n Simple_repeat Simple_repeat 4 284 0 251 217 71 9 chr1 14373078 14373171 -228291182 + MIR SINE MIR 33 137 -71 582 294 88 0 chr1 14373412 14373582 -228290771 - MIR SINE MIR -68 194 10 1714 158 13 39 chr1 14374199 14374509 -228289844 - AluJo SINE Alu -2 310 9 334 299 0 0 chr1 14374669 14374756 -228289597 - MIR SINE MIR -13 249 163 201 244 0 0 chr1 14374767 14374812 -228289541 + MIR SINE MIR 218 262 0 433 243 226 11 chr1 14375472 14375649 -228288704 + MIR SINE MIR 37 251 -11 360 333 167 0 chr1 14376178 14376322 -228288031 + MIR SINE MIR 20 187 -75 250 319 84 0 chr1 14376322 14376441 -228287912 + L2 LINE L2 2580 2708 -606 1161 170 62 136 chr1 14376445 14376608 -228287745 + AluSx SINE Alu 1 130 -182 185 0 40 0 chr1 14376608 14376633 -228287720 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1161 170 62 136 chr1 14376633 14376792 -228287561 + AluSx SINE Alu 130 299 -13 39 0 0 0 chr1 14376826 14376865 -228287488 + AT_rich Low_complexity Low_complexity 1 39 0 863 249 111 51 chr1 14376873 14377284 -228287069 + L2 LINE L2 2701 3150 -163 2305 92 0 0 chr1 14377284 14377589 -228286764 - AluSx SINE Alu -7 305 1 863 249 111 51 chr1 14377589 14377761 -228286592 + L2 LINE L2 3150 3310 -3 263 372 41 0 chr1 14378313 14378434 -228285919 + MIR SINE MIR 81 206 -56 2122 116 0 0 chr1 14378445 14378755 -228285598 + AluSq SINE Alu 1 310 0 838 268 0 71 chr1 14378877 14379033 -228285320 + MIR SINE MIR 13 144 -118 2377 87 10 0 chr1 14379033 14379342 -228285011 - AluSq SINE Alu 0 313 2 838 268 0 71 chr1 14379342 14379454 -228284899 + MIR SINE MIR 144 262 0 269 328 125 0 chr1 14379472 14379600 -228284753 - MIR3 SINE MIR -25 183 40 271 278 157 9 chr1 14379769 14379877 -228284476 - MIR SINE MIR -109 153 30 1059 158 0 0 chr1 14380321 14380486 -228283867 - AluSg/x SINE Alu -14 298 134 1528 163 50 21 chr1 14380486 14380769 -228283584 - AluSx SINE Alu -5 307 17 381 311 50 0 chr1 14380799 14380918 -228283435 - MIR SINE MIR -13 249 125 1051 146 0 12 chr1 14380921 14381086 -228283267 + FRAM SINE Alu 2 164 -12 316 309 32 0 chr1 14381087 14381181 -228283172 - MIR SINE MIR -76 132 36 329 277 12 0 chr1 14381399 14381482 -228282871 + MIR3 SINE MIR 116 199 -9 1446 98 25 0 chr1 14381804 14382008 -228282345 - AluSg/x SINE Alu -19 293 85 186 43 0 0 chr1 14382008 14382031 -228282322 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1790 117 48 15 chr1 14382040 14382313 -228282040 - AluSx SINE Alu -30 282 1 216 195 172 35 chr1 14382698 14382785 -228281568 + MIR SINE MIR 35 133 -75 863 165 0 16 chr1 14382948 14383130 -228281223 + (CA)n Simple_repeat Simple_repeat 2 180 0 358 234 224 88 chr1 14383509 14383625 -228280728 + MIR SINE MIR 45 144 -118 2358 91 3 0 chr1 14383625 14383934 -228280419 + AluSx SINE Alu 1 310 -2 358 234 224 88 chr1 14383934 14384009 -228280344 + MIR SINE MIR 144 262 0 513 192 62 71 chr1 14384058 14384119 -228280234 + ORSL DNA AcHobo 23 83 -192 1735 189 0 3 chr1 14384119 14384431 -228279922 + AluJo SINE Alu 1 311 -1 513 192 62 71 chr1 14384431 14384593 -228279760 + ORSL DNA AcHobo 83 244 -31 2078 138 0 0 chr1 14385042 14385338 -228279015 - AluSx SINE Alu -16 296 1 249 108 0 0 chr1 14385436 14385473 -228278880 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 197 250 78 0 chr1 14385478 14385542 -228278811 - L2 LINE L2 -17 3255 3187 207 0 0 0 chr1 14386280 14386303 -228278050 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1607 139 94 8 chr1 14386305 14386572 -228277781 - AluJo SINE Alu -22 290 1 854 138 0 0 chr1 14386824 14386947 -228277406 - FLAM_C SINE Alu -16 127 5 241 304 29 0 chr1 14387239 14387308 -228277045 - MIR SINE MIR -55 153 83 480 318 32 21 chr1 14387513 14387589 -228276764 + MIR SINE MIR 36 110 -152 2245 84 0 0 chr1 14387589 14387897 -228276456 - AluSx SINE Alu 0 308 1 480 318 32 21 chr1 14387897 14388008 -228276345 + MIR SINE MIR 110 226 -36 2238 106 0 13 chr1 14389965 14390276 -228274077 - AluSx SINE Alu -5 307 1 318 271 45 45 chr1 14390343 14390468 -228273885 + MIR SINE MIR 63 188 -69 209 310 163 31 chr1 14392109 14392238 -228272115 + L2 LINE L2 3167 3312 -1 288 341 8 23 chr1 14392779 14392908 -228271445 - L3 LINE CR1 -108 1469 1343 2224 105 0 0 chr1 14392950 14393244 -228271109 - AluSx SINE Alu -18 294 1 747 212 196 5 chr1 14393398 14393582 -228270771 - MER20 DNA MER1_type 0 219 1 1890 132 47 7 chr1 14394283 14394579 -228269774 - AluJo SINE Alu -4 308 1 316 237 110 18 chr1 14394864 14395005 -228269348 - MIR SINE MIR -62 146 7 2448 69 0 0 chr1 14395603 14395907 -228268446 - AluY SINE Alu -7 304 1 704 181 44 106 chr1 14395920 14396096 -228268257 + MER20 DNA MER1_type 8 169 -50 2251 108 0 0 chr1 14396096 14396401 -228267952 + AluSg SINE Alu 1 305 -5 704 181 44 106 chr1 14396401 14396450 -228267903 + MER20 DNA MER1_type 169 219 0 275 330 28 18 chr1 14396454 14396563 -228267790 + MIR SINE MIR 151 260 -2 742 272 60 4 chr1 14397249 14397484 -228266869 + MIR SINE MIR 14 261 -1 1725 159 33 10 chr1 14397545 14397669 -228266684 + AluJb SINE Alu 1 121 -191 2138 117 0 0 chr1 14397669 14397978 -228266375 + AluSg SINE Alu 1 309 0 1725 159 33 10 chr1 14397978 14398154 -228266199 + AluJb SINE Alu 121 309 -3 320 238 62 33 chr1 14398823 14398945 -228265408 - MIR3 SINE MIR -43 165 35 554 288 156 0 chr1 14399475 14399687 -228264666 - MIR SINE MIR -14 248 4 355 298 164 35 chr1 14399709 14399880 -228264473 - L3 LINE CR1 -8 1569 1377 2632 36 0 0 chr1 14399882 14400187 -228264166 + AluY SINE Alu 1 305 -6 2436 96 0 0 chr1 14400197 14400509 -228263844 + AluSx SINE Alu 1 312 0 188 308 51 26 chr1 14400560 14400677 -228263676 - MIR3 SINE MIR -84 124 5 225 108 0 0 chr1 14400903 14400940 -228263413 + (GA)n Simple_repeat Simple_repeat 1 37 0 405 274 150 26 chr1 14401318 14401376 -228262977 - MER5A DNA MER1_type -1 188 139 1913 149 3 3 chr1 14401376 14401671 -228262682 + AluJo SINE Alu 1 295 -17 405 274 150 26 chr1 14401671 14401765 -228262588 - MER5A DNA MER1_type -50 139 17 501 245 43 22 chr1 14401767 14401906 -228262447 + MIR SINE MIR 12 153 -109 476 199 58 79 chr1 14402581 14402697 -228261656 + MIR SINE MIR 41 153 -98 2268 116 0 3 chr1 14402697 14403008 -228261345 + AluSx SINE Alu 1 310 -2 476 199 58 79 chr1 14403008 14403045 -228261308 + MIR SINE MIR 153 189 -62 336 252 165 0 chr1 14403469 14403584 -228260769 - MIR SINE MIR -73 189 56 274 244 337 12 chr1 14403950 14404122 -228260231 - MIR SINE MIR -12 250 23 324 309 32 56 chr1 14404737 14404863 -228259490 + MIR3 SINE MIR 59 181 -27 292 283 10 20 chr1 14405048 14405147 -228259206 - MIR3 SINE MIR -12 196 99 401 229 21 10 chr1 14405997 14406093 -228258260 + MIR SINE MIR 20 116 -146 26 30 0 0 chr1 14408168 14408201 -228256152 + GC_rich Low_complexity Low_complexity 1 33 0 38 22 0 0 chr1 14408640 14408685 -228255668 + GC_rich Low_complexity Low_complexity 1 45 0 537 241 49 12 chr1 14409461 14409623 -228254730 + MER5A DNA MER1_type 22 189 0 2353 73 0 3 chr1 14411828 14412129 -228252224 - AluY SINE Alu -11 300 1 364 303 17 17 chr1 14412744 14412863 -228251490 + L2 LINE L2 3195 3313 0 1904 132 10 16 chr1 14413368 14413672 -228250681 - AluJb SINE Alu -5 307 6 1623 188 20 7 chr1 14413893 14414191 -228250162 - AluJo SINE Alu -10 302 1 3092 169 57 51 chr1 14414191 14414647 -228249706 + MER21A LTR ERV1 16 522 -409 2303 89 0 7 chr1 14414647 14414951 -228249402 - AluSq SINE Alu -11 302 1 3092 169 57 51 chr1 14414951 14415336 -228249017 + MER21A LTR ERV1 522 903 -28 615 182 94 61 chr1 14415458 14415639 -228248714 + MER58A DNA MER1_type 30 216 -8 402 332 132 5 chr1 14415715 14415905 -228248448 + MIR SINE MIR 49 262 0 825 21 0 0 chr1 14416052 14416149 -228248204 + L1PA4 LINE L1 6056 6152 -3 220 263 0 18 chr1 14416282 14416339 -228248014 + L2 LINE L2 3257 3312 -1 379 263 0 51 chr1 14417249 14417386 -228246967 + LTR67 LTR ERVL 428 557 0 466 276 56 56 chr1 14417664 14417776 -228246577 + MLT1H LTR MaLR 230 341 -208 1131 205 29 5 chr1 14417776 14417986 -228246367 - MER20 DNA MER1_type -3 216 2 466 276 56 56 chr1 14417986 14418177 -228246176 + MLT1H LTR MaLR 340 533 -16 450 288 40 57 chr1 14418196 14418591 -228245762 - MLT1J LTR MaLR -50 461 37 1975 166 3 0 chr1 14418907 14419202 -228245151 - AluJo SINE Alu -16 296 1 26 0 0 0 chr1 14419313 14419339 -228245014 + AT_rich Low_complexity Low_complexity 1 26 0 2360 94 0 3 chr1 14419365 14419663 -228244690 + AluSq SINE Alu 1 297 -16 573 288 117 0 chr1 14419937 14420142 -228244211 + MIR SINE MIR 34 262 0 1074 117 0 0 chr1 14420192 14420337 -228244016 - AluSg/x SINE Alu -12 300 156 2066 140 14 0 chr1 14420344 14420636 -228243717 - AluSg SINE Alu -14 296 1 2560 60 0 22 chr1 14421267 14421584 -228242769 - AluY SINE Alu -1 310 1 2167 141 0 3 chr1 14421647 14421960 -228242393 - AluSx SINE Alu 0 312 1 314 318 34 34 chr1 14421967 14422115 -228242238 - L1ME4a LINE L1 0 6121 5974 1979 142 0 37 chr1 14422135 14422459 -228241894 - AluJb SINE Alu 0 312 1 1224 68 182 0 chr1 14422583 14422775 -228241578 + MER30 DNA MER1_type 4 230 0 2346 68 20 3 chr1 14423162 14423455 -228240898 - AluY SINE Alu -13 298 1 248 138 0 69 chr1 14423742 14423800 -228240553 + MIR SINE MIR 118 171 -91 180 318 16 0 chr1 14424525 14424588 -228239765 + L2 LINE L2 2990 3053 -260 899 216 0 5 chr1 14424694 14424879 -228239474 + AluSg/x SINE Alu 112 295 -17 257 232 217 40 chr1 14424940 14425031 -228239322 - MER106A DNA MER1_type -2 234 160 339 25 0 0 chr1 14425031 14425071 -228239282 + (TG)n Simple_repeat Simple_repeat 2 41 0 257 232 217 40 chr1 14425071 14425124 -228239229 - MER106A DNA MER1_type -76 160 118 2192 103 41 0 chr1 14425124 14425414 -228238939 + AluSx SINE Alu 1 302 -10 257 232 217 40 chr1 14425414 14425466 -228238887 - MER106A DNA MER1_type -118 118 2 308 283 9 19 chr1 14425528 14425634 -228238719 + L2 LINE L2 3207 3311 -2 2616 41 3 0 chr1 14425943 14426236 -228238117 - AluY SINE Alu -17 294 1 854 103 0 0 chr1 14426994 14427101 -228237252 + AluY SINE Alu 1 107 -204 373 73 0 37 chr1 14427103 14427197 -228237156 + Alu SINE Alu 240 302 0 373 278 173 16 chr1 14427923 14428114 -228236239 - MER102a DNA MER1_type -2 328 108 2465 82 3 0 chr1 14428119 14428423 -228235930 - AluSx SINE Alu -7 305 1 992 122 5 41 chr1 14428540 14428736 -228235617 - MER53 DNA DNA 0 189 1 1643 174 3 11 chr1 14429018 14429305 -228235048 - AluJo SINE Alu -9 303 19 252 115 10 73 chr1 14430149 14430245 -228234108 + (GGGA)n Simple_repeat Simple_repeat 1 90 0 1949 151 3 3 chr1 14430586 14430884 -228233469 - AluJb SINE Alu -14 298 1 1005 110 0 7 chr1 14430884 14431020 -228233333 - AluJo SINE Alu -177 135 1 1991 124 3 77 chr1 14431298 14431671 -228232682 + AluSq SINE Alu 1 348 0 206 287 85 21 chr1 14431688 14431782 -228232571 - MIR SINE MIR -44 218 119 252 237 162 64 chr1 14432245 14432474 -228231879 - MIR SINE MIR -1 261 4 1642 163 48 24 chr1 14432694 14432983 -228231370 - AluJo SINE Alu -16 296 1 372 292 0 8 chr1 14434406 14434526 -228229827 + (CA)n Simple_repeat Simple_repeat 2 120 0 403 205 79 57 chr1 14434566 14434774 -228229579 + MIR SINE MIR 17 227 -35 431 287 64 6 chr1 14435281 14435438 -228228915 - MIR SINE MIR -74 188 23 330 315 0 0 chr1 14435828 14435920 -228228433 + (TCCA)n Simple_repeat Simple_repeat 3 94 0 363 303 21 88 chr1 14435921 14436159 -228228194 - MIR SINE MIR -10 252 31 811 200 56 37 chr1 14438052 14438267 -228226086 + MER20 DNA MER1_type 1 219 0 300 311 94 19 chr1 14438277 14438383 -228225970 + L2 LINE L2 3159 3272 0 8574 43 10 0 chr1 14438510 14439469 -228224884 + LTR5 LTR ERVK 1 969 0 186 43 0 0 chr1 14439716 14439739 -228224614 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 793 239 16 82 chr1 14440080 14440174 -228224179 + MIR SINE MIR 36 135 -127 1928 134 72 0 chr1 14440174 14440465 -228223888 - AluSx SINE Alu 0 312 1 793 239 16 82 chr1 14440465 14440613 -228223740 + MIR SINE MIR 135 262 0 2029 138 27 7 chr1 14440633 14440931 -228223422 - AluJb SINE Alu -8 304 1 1500 196 0 19 chr1 14441462 14441733 -228222620 - AluJo SINE Alu -46 266 1 608 237 177 19 chr1 14441751 14441966 -228222387 - MIR SINE MIR 0 262 14 2408 75 0 3 chr1 14442097 14442477 -228221876 + AluY SINE Alu 1 311 0 262 222 28 14 chr1 14443008 14443080 -228221273 - MIR SINE MIR -127 135 63 2213 124 3 0 chr1 14443331 14443638 -228220715 + AluSg SINE Alu 1 308 -2 411 186 0 0 chr1 14444488 14444558 -228219795 + MER3 DNA MER1_type 16 85 -124 1590 167 37 11 chr1 14444647 14444916 -228219437 - AluJo SINE Alu -36 276 1 2342 75 7 10 chr1 14444965 14445258 -228219095 - AluSg SINE Alu -18 292 1 650 290 75 4 chr1 14445438 14445693 -228218660 - L2 LINE L2 0 3313 3041 212 158 0 0 chr1 14445775 14445813 -228218540 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 310 335 43 27 chr1 14445898 14446083 -228218270 - L2 LINE L2 -35 3278 3091 601 291 48 33 chr1 14446228 14446561 -228217792 + L2 LINE L2 2958 3295 -18 291 279 0 0 chr1 14447252 14447320 -228217033 + L2 LINE L2 3205 3272 0 389 277 118 14 chr1 14447964 14448184 -228216169 + L1MC4a LINE L1 5687 5929 -1879 1927 154 0 7 chr1 14448210 14448524 -228215829 + AluJb SINE Alu 1 312 0 350 283 150 6 chr1 14448546 14448726 -228215627 - MIR SINE MIR -44 218 13 514 297 63 63 chr1 14449354 14449533 -228214820 - MIR SINE MIR -14 248 67 2090 115 14 24 chr1 14449533 14449829 -228214524 - AluSq SINE Alu -20 293 1 514 297 63 63 chr1 14449829 14449888 -228214465 - MIR SINE MIR -194 68 10 372 264 76 123 chr1 14450093 14450213 -228214140 - L2 LINE L2 -1 3271 3147 2238 113 0 19 chr1 14450213 14450531 -228213822 + AluSx SINE Alu 1 312 0 372 264 76 123 chr1 14450531 14450686 -228213667 - L2 LINE L2 -125 3147 3009 1604 103 0 0 chr1 14451055 14451258 -228213095 - AluSx SINE Alu -94 218 16 390 277 27 9 chr1 14451258 14451370 -228212983 - MIR SINE MIR -100 162 49 242 311 78 0 chr1 14451784 14451887 -228212466 - MIR SINE MIR -88 174 64 2452 89 3 0 chr1 14452177 14452481 -228211872 - AluSg SINE Alu -5 305 1 1551 149 87 29 chr1 14452884 14453160 -228211193 + AluJo SINE Alu 21 312 0 2511 90 0 0 chr1 14453849 14454159 -228210194 - AluSx SINE Alu -2 310 1 408 195 35 62 chr1 14454970 14455056 -228209297 - MIR SINE MIR -62 146 62 2380 146 37 0 chr1 14455056 14455466 -228208887 + MSTC LTR MaLR 1 425 -3 408 195 35 62 chr1 14455466 14455492 -228208861 - MIR SINE MIR -146 62 37 2462 58 7 0 chr1 14456466 14456761 -228207592 - AluSc SINE Alu -12 297 1 220 307 20 30 chr1 14456890 14456991 -228207362 + L2 LINE L2 3173 3272 0 962 212 19 0 chr1 14457036 14457248 -228207105 + MER20 DNA MER1_type 4 219 0 482 229 14 14 chr1 14458106 14458246 -228206107 + L2 LINE L2 2921 3060 -212 2122 135 0 31 chr1 14458348 14458523 -228205830 - AluSx SINE Alu -4 308 146 2188 62 0 0 chr1 14458523 14458779 -228205574 - AluY SINE Alu -16 295 40 2122 135 0 31 chr1 14458779 14458921 -228205432 - AluSx SINE Alu -166 146 1 971 221 11 0 chr1 14459933 14460123 -228204230 + MER20 DNA MER1_type 28 219 0 795 293 18 4 chr1 14460509 14460734 -228203619 - L3 LINE CR1 -160 1417 1190 2315 86 3 13 chr1 14460839 14461143 -228203210 - AluSc SINE Alu -8 301 1 547 297 7 0 chr1 14461283 14461428 -228202925 + L1ME4a LINE L1 5517 5662 -459 2353 104 0 0 chr1 14461599 14461897 -228202456 - AluSx SINE Alu -14 298 1 2149 184 85 2 chr1 14461898 14462321 -228202032 + LTR24 LTR ERV1 10 467 0 324 220 33 47 chr1 14462446 14462596 -228201757 + L1ME4a LINE L1 5974 6121 0 2438 103 0 0 chr1 14463259 14463560 -228200793 - AluSx SINE Alu -11 301 1 332 235 31 31 chr1 14464047 14464145 -228200208 - L3 LINE CR1 -420 1157 1060 332 285 41 64 chr1 14464177 14464349 -228200004 - MER5A DNA MER1_type -15 174 7 2532 90 0 0 chr1 14464752 14465064 -228199289 - AluSx SINE Alu 0 312 1 557 317 36 18 chr1 14465242 14465466 -228198887 - MIR SINE MIR -27 235 8 372 235 77 41 chr1 14466297 14466467 -228197886 + L1ME4a LINE L1 5943 6118 -3 212 296 123 67 chr1 14466875 14467054 -228197299 - MIR SINE MIR -61 201 13 2270 129 0 0 chr1 14467114 14467423 -228196930 - AluSx SINE Alu -2 310 2 345 321 71 0 chr1 14467748 14467888 -228196465 - MIR SINE MIR -65 197 48 313 259 14 77 chr1 14468219 14468362 -228195991 + L2 LINE L2 3180 3313 0 549 268 30 18 chr1 14469113 14469277 -228195076 - MIR SINE MIR -89 173 8 273 119 0 0 chr1 14469500 14469542 -228194811 + (TAA)n Simple_repeat Simple_repeat 1 42 0 353 319 28 7 chr1 14469594 14469735 -228194618 - MIR SINE MIR -75 187 44 2024 98 8 4 chr1 14470738 14471004 -228193349 + AluSx SINE Alu 1 267 -45 194 307 67 27 chr1 14471672 14471747 -228192606 - MIR SINE MIR -179 83 6 442 297 131 9 chr1 14471749 14471971 -228192382 + L3 LINE CR1 863 1111 -466 385 259 225 55 chr1 14471978 14472267 -228192086 - MER102b DNA MER1_type -3 338 1 278 302 114 42 chr1 14472310 14472618 -228191735 + L3 LINE CR1 1172 1501 -76 505 336 33 5 chr1 14473524 14473738 -228190615 + MIR SINE MIR 2 221 -41 239 317 100 17 chr1 14473748 14473868 -228190485 - MIR SINE MIR -116 146 17 757 193 198 0 chr1 14473868 14474055 -228190298 + MER58A DNA MER1_type 1 224 0 361 274 20 65 chr1 14475175 14475328 -228189025 + MER5B DNA MER1_type 1 146 -32 842 157 0 15 chr1 14475392 14475526 -228188827 + AluJo SINE Alu 4 135 -177 1772 197 0 3 chr1 14475526 14475820 -228188533 + AluJo SINE Alu 1 293 -19 347 204 114 37 chr1 14475840 14475977 -228188376 - MER5A DNA MER1_type -25 164 7 364 285 250 14 chr1 14476004 14476148 -228188205 + MER5A DNA MER1_type 12 189 0 509 234 74 13 chr1 14476882 14477078 -228187275 + MIR SINE MIR 1 248 -14 185 316 211 23 chr1 14477078 14477211 -228187142 + MIR3 SINE MIR 2 159 -49 957 170 37 108 chr1 14477212 14477281 -228187072 + MER58A DNA MER1_type 1 73 -2347 2343 106 0 0 chr1 14477281 14477584 -228186769 - AluSx SINE Alu -6 306 4 957 170 37 108 chr1 14477584 14477755 -228186598 + MER58A DNA MER1_type 73 224 0 527 301 229 12 chr1 14477792 14478207 -228186146 + MLT1H LTR MaLR 32 536 -13 2206 106 21 0 chr1 14478366 14478649 -228185704 + AluSx SINE Alu 6 294 -18 2091 149 0 13 chr1 14479166 14479475 -228184878 + AluSx SINE Alu 1 305 -7 229 306 157 9 chr1 14479538 14479646 -228184707 - L2 LINE L2 -10 3262 3139 1853 172 107 35 chr1 14479863 14480323 -228184030 + MLT1D LTR MaLR 8 500 -5 245 306 59 0 chr1 14480546 14480631 -228183722 - MIR SINE MIR -62 146 57 711 181 54 42 chr1 14480814 14480980 -228183373 - MER20 DNA MER1_type -18 201 34 251 250 13 13 chr1 14481304 14481380 -228182973 - MER91A DNA MER1_type -11 185 110 261 307 203 13 chr1 14482195 14482348 -228182005 - MIR SINE MIR -33 229 48 305 288 25 0 chr1 14482814 14482894 -228181459 + L2 LINE L2 3191 3272 0 373 288 151 14 chr1 14483821 14484033 -228180320 - MIR SINE MIR -17 245 5 511 323 28 68 chr1 14484232 14484361 -228179992 + MIR SINE MIR 10 126 -136 1923 153 23 0 chr1 14484361 14484662 -228179691 + AluJb SINE Alu 1 308 -4 511 323 28 68 chr1 14484662 14484780 -228179573 + MIR SINE MIR 126 247 -15 413 284 40 20 chr1 14484934 14485082 -228179271 + MIR SINE MIR 111 261 -1 192 125 0 0 chr1 14485084 14485116 -228179237 + (CAT)n Simple_repeat Simple_repeat 3 34 0 276 125 0 42 chr1 14485118 14485190 -228179163 + (TCC)n Simple_repeat Simple_repeat 3 71 0 1541 195 7 36 chr1 14485758 14486060 -228178293 - AluJo SINE Alu -18 294 2 249 261 11 43 chr1 14486450 14486542 -228177811 + L1MC4a LINE L1 5521 5609 -512 618 149 0 0 chr1 14486716 14486850 -228177503 + (TTCC)n Simple_repeat Simple_repeat 4 137 0 912 178 0 0 chr1 14486854 14487126 -228177227 + (TCCA)n Simple_repeat Simple_repeat 1 272 0 220 324 14 0 chr1 14487145 14487219 -228177134 - L2 LINE L2 0 3313 3239 391 278 163 41 chr1 14487254 14487721 -228176632 + L2 LINE L2 2288 2811 -503 452 251 49 18 chr1 14488191 14488389 -228175964 + L1MC4a LINE L1 5651 5800 -321 797 244 6 11 chr1 14488462 14488642 -228175711 - MIR SINE MIR -6 256 78 180 111 0 0 chr1 14490218 14490245 -228174108 + (A)n Simple_repeat Simple_repeat 1 27 0 2439 93 3 0 chr1 14490423 14490735 -228173618 - AluSp SINE Alu 0 313 1 290 306 0 0 chr1 14491897 14491969 -228172384 + L2 LINE L2 3177 3248 -24 195 42 0 0 chr1 14493142 14493166 -228171187 + (CA)n Simple_repeat Simple_repeat 2 25 0 623 256 105 0 chr1 14494263 14494454 -228169899 + MIR SINE MIR 47 257 -5 2667 73 3 0 chr1 14495301 14495655 -228168698 + THE1A LTR MaLR 1 355 0 952 179 67 0 chr1 14495769 14495948 -228168405 + MER3 DNA MER1_type 1 191 -18 416 206 37 37 chr1 14495959 14496066 -228168287 + MIR SINE MIR 33 139 -123 24 0 0 0 chr1 14496086 14496110 -228168243 + AT_rich Low_complexity Low_complexity 1 24 0 584 275 31 37 chr1 14496298 14496647 -228167706 + L1MEc LINE L1 1643 1989 -4732 210 308 0 0 chr1 14496647 14496754 -228167599 + (CA)n Simple_repeat Simple_repeat 1 107 0 233 293 68 15 chr1 14496756 14496889 -228167464 + L1MEc LINE L1 1953 2092 -4448 520 303 57 72 chr1 14496900 14497257 -228167096 + L1MEc LINE L1 2199 2472 -4249 2240 125 3 0 chr1 14497257 14497562 -228166791 + AluSc SINE Alu 3 308 -1 520 303 57 72 chr1 14497562 14497667 -228166686 + L1MEc LINE L1 2472 2577 -4144 2205 261 52 25 chr1 14497668 14498498 -228165855 + L1MEc LINE L1 2554 3405 -3135 816 132 25 0 chr1 14498885 14499006 -228165347 - FLAM_C SINE Alu -17 126 3 821 132 0 44 chr1 14499357 14499493 -228164860 + FLAM_C SINE Alu 1 130 -3 794 196 117 6 chr1 14499698 14499816 -228164537 + MER3 DNA MER1_type 11 157 -52 2362 93 0 23 chr1 14499816 14500126 -228164227 - AluSx SINE Alu 0 312 10 794 196 117 6 chr1 14500126 14500186 -228164167 + MER3 DNA MER1_type 157 209 0 313 287 67 27 chr1 14500325 14500475 -228163878 + MIR SINE MIR 2 157 -105 272 205 34 34 chr1 14501225 14501283 -228163070 - MER113 DNA MER1_type? -288 233 176 2055 123 0 17 chr1 14501283 14501575 -228162778 - AluSx SINE Alu -17 295 9 272 205 34 34 chr1 14501575 14501633 -228162720 - MER113 DNA MER1_type? -344 177 117 417 300 56 38 chr1 14502509 14502701 -228161652 + L1ME4a LINE L1 5548 5748 -373 2572 72 0 3 chr1 14502701 14503006 -228161347 + AluY SINE Alu 1 304 -7 417 300 56 38 chr1 14503006 14503080 -228161273 + L1ME4a LINE L1 5748 5819 -302 300 275 118 38 chr1 14503133 14503344 -228161009 + L1ME4a LINE L1 5894 6121 0 425 220 22 0 chr1 14503567 14503888 -228160465 + (CA)n Simple_repeat Simple_repeat 1 328 0 2055 91 44 7 chr1 14504384 14504699 -228159654 - AluSq SINE Alu 0 325 1 216 238 61 122 chr1 14505760 14505816 -228158537 + MIR SINE MIR 36 94 -168 2043 151 0 3 chr1 14505816 14506108 -228158245 - AluJb SINE Alu -21 291 1 216 238 61 122 chr1 14506108 14506198 -228158155 + MIR SINE MIR 94 173 -89 2170 198 114 8 chr1 14506222 14506712 -228157641 + MLT1F LTR MaLR 1 542 0 1684 266 98 14 chr1 14506909 14507494 -228156859 - L1MEc LINE L1 -5658 738 95 188 35 35 0 chr1 14507494 14507523 -228156830 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 1684 266 98 14 chr1 14507523 14507569 -228156784 - L1MEc LINE L1 -6301 95 54 473 263 58 26 chr1 14507608 14507764 -228156589 + MLT1I LTR MaLR 235 395 -14 573 219 159 0 chr1 14507764 14507915 -228156438 - MER5A DNA MER1_type -2 187 13 460 271 137 45 chr1 14508411 14508695 -228155658 + L2 LINE L2 2718 2975 -338 1479 113 17 22 chr1 14508695 14508926 -228155427 + MER30 DNA MER1_type 1 230 0 460 271 137 45 chr1 14508926 14509177 -228155176 + L2 LINE L2 2975 3296 -17 225 0 0 0 chr1 14509179 14509204 -228155149 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 190 306 0 0 chr1 14509509 14509558 -228154795 - L2 LINE L2 -14 3299 3251 446 247 48 42 chr1 14509558 14509724 -228154629 + MER117 DNA MER1_type 4 170 -27 2110 72 97 27 chr1 14510394 14510457 -228153896 - THE1A LTR MaLR -1 354 297 2600 66 0 0 chr1 14510457 14510758 -228153595 + AluY SINE Alu 1 301 -10 2110 72 97 27 chr1 14510758 14511025 -228153328 - THE1A LTR MaLR -58 297 1 11804 77 10 1 chr1 14511025 14512591 -228151762 - THE1A-int LTR MaLR 0 1580 1 2621 68 11 0 chr1 14512591 14512942 -228151411 - THE1A LTR MaLR 0 355 1 380 314 8 57 chr1 14512943 14513067 -228151286 - MIR SINE MIR -61 147 30 309 245 154 37 chr1 14513119 14513307 -228151046 + MIR SINE MIR 24 233 -29 2454 103 3 0 chr1 14514608 14514919 -228149434 - AluSx SINE Alu 0 312 1 418 324 14 14 chr1 14515282 14515427 -228148926 + L2 LINE L2 3153 3297 -16 261 83 0 0 chr1 14515427 14515463 -228148890 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2354 66 24 0 chr1 14515756 14516043 -228148310 - AluY SINE Alu -17 294 1 351 228 118 118 chr1 14516340 14516452 -228147901 + MIR SINE MIR 19 130 -132 2135 114 45 0 chr1 14516452 14516741 -228147612 - AluSx SINE Alu -10 302 1 351 228 118 118 chr1 14516741 14516865 -228147488 + MIR SINE MIR 129 255 -7 2412 76 7 0 chr1 14517357 14517645 -228146708 + AluSq SINE Alu 1 290 -23 332 224 30 0 chr1 14518717 14518784 -228145569 - L2 LINE L2 -4 3268 3200 378 240 47 113 chr1 14519163 14519257 -228145096 + MLT1K LTR MaLR 442 524 -64 1232 196 6 91 chr1 14519257 14519599 -228144754 - AluSq SINE Alu 0 313 1 378 240 47 113 chr1 14519599 14519654 -228144699 + MLT1K LTR MaLR 524 581 -7 787 240 75 37 chr1 14519728 14519982 -228144371 + MLT1H LTR MaLR 1 305 -244 3626 135 0 11 chr1 14519998 14520552 -228143801 - L1PB1 LINE L1 -55 6096 5549 253 138 0 52 chr1 14520548 14520606 -228143747 + L1PB1 LINE L1 6097 6151 0 * 577 239 150 14 chr1 14520695 14520908 -228143445 + MLT1H LTR MaLR 309 550 -5 762 270 52 9 chr1 14521310 14521521 -228142832 + MIR SINE MIR 37 256 -6 2497 57 0 0 chr1 14521934 14522235 -228142118 + AluY SINE Alu 1 301 -10 364 324 0 0 chr1 14522419 14522521 -228141832 + MIR SINE MIR 90 191 -71 823 253 65 0 chr1 14522535 14522721 -228141632 + MER58A DNA MER1_type 1 198 -26 413 200 0 0 chr1 14522753 14522818 -228141535 - MER2 DNA MER2_type 0 345 281 186 167 0 0 chr1 14522818 14522854 -228141499 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 1688 186 4 0 chr1 14522880 14523160 -228141193 - AluJo SINE Alu -31 281 1 660 244 55 12 chr1 14523215 14523379 -228140974 - MIR SINE MIR -83 179 9 1117 161 14 67 chr1 14523644 14523794 -228140559 + MER20 DNA MER1_type 9 145 -74 2093 104 3 0 chr1 14523794 14524083 -228140270 + AluSx SINE Alu 1 290 -22 1117 161 14 67 chr1 14524083 14524155 -228140198 + MER20 DNA MER1_type 145 219 0 1413 205 41 62 chr1 14524638 14524740 -228139613 + L1ME2 LINE L1 5724 5827 -337 2233 104 0 3 chr1 14524740 14525049 -228139304 - AluSg SINE Alu -2 308 1 1413 205 41 62 chr1 14525049 14525368 -228138985 + L1ME2 LINE L1 5827 6135 -29 385 253 35 0 chr1 14525369 14525456 -228138897 + MLT1F1 LTR MaLR 2 91 -451 418 155 14 0 chr1 14525456 14525527 -228138826 - MLT1B LTR MaLR 0 390 319 716 155 0 39 chr1 14525545 14525674 -228138679 - FLAM_C SINE Alu -14 129 6 1426 123 40 4 chr1 14525674 14525901 -228138452 - MLT1B LTR MaLR -62 328 94 1951 73 0 8 chr1 14525901 14526161 -228138192 + AluY SINE Alu 50 307 -4 1216 134 0 0 chr1 14526165 14526351 -228138002 + AluSg/x SINE Alu 127 312 0 574 130 33 0 chr1 14526364 14526456 -228137897 - MLT1B LTR MaLR -295 95 1 1824 209 47 23 chr1 14526469 14526916 -228137437 + MLT1F1 LTR MaLR 107 567 0 1636 110 118 15 chr1 14527105 14527377 -228136976 + AluSg1 SINE Alu 1 300 -9 2121 66 3 72 chr1 14527473 14527792 -228136561 + AluY SINE Alu 1 297 -14 182 183 67 100 chr1 14528389 14528449 -228135904 + MIR SINE MIR 120 177 -85 400 223 57 57 chr1 14528576 14528751 -228135602 + L1ME4a LINE L1 5947 6121 0 1718 165 3 13 chr1 14529199 14529508 -228134845 + AluJb SINE Alu 1 306 -6 213 273 0 45 chr1 14529511 14529577 -228134776 + L2 LINE L2 3026 3088 -184 261 300 22 0 chr1 14529594 14529684 -228134669 - MIR SINE MIR -7 255 164 351 235 53 83 chr1 14529747 14529879 -228134474 + L2 LINE L2 3177 3304 -9 189 253 27 40 chr1 14529984 14530059 -228134294 + L2 LINE L2 3159 3232 -40 258 256 136 50 chr1 14530217 14530402 -228133951 - MIR SINE MIR -39 223 19 2548 97 8 21 chr1 14530799 14531179 -228133174 + THE1C LTR MaLR 1 375 0 268 164 18 18 chr1 14531808 14531863 -228132490 + MLT1K LTR MaLR 192 246 -342 1823 165 3 0 chr1 14531963 14532266 -228132087 - AluJb SINE Alu -8 304 1 2570 150 24 0 chr1 14532271 14532724 -228131629 - L1MB2 LINE L1 0 6171 5708 2112 92 0 3 chr1 14532923 14533236 -228131117 - AluSq SINE Alu 0 313 2 259 58 0 77 chr1 14533530 14533582 -228130771 + (TTTC)n Simple_repeat Simple_repeat 4 51 0 2431 54 3 0 chr1 14533990 14534288 -228130065 - AluY SINE Alu -12 299 1 435 305 104 18 chr1 14534333 14534544 -228129809 - MIR SINE MIR -29 233 20 3658 192 36 52 chr1 14534829 14535144 -228129209 - MER63C DNA MER1_type -130 930 611 2885 186 0 4 chr1 14535144 14535632 -228128721 + MER66B LTR ERV1 1 486 0 3658 192 36 52 chr1 14535632 14536193 -228128160 - MER63C DNA MER1_type -449 611 68 1250 205 37 13 chr1 14536335 14536667 -228127686 + L1MD3 LINE L1 6777 7124 -661 2081 137 0 3 chr1 14536702 14537009 -228127344 - AluSx SINE Alu -6 306 1 664 251 89 0 chr1 14538661 14538840 -228125513 + MLT1K LTR MaLR 117 311 -277 180 0 0 0 chr1 14538912 14538932 -228125421 + (T)n Simple_repeat Simple_repeat 1 20 0 726 71 9 9 chr1 14538934 14539047 -228125306 - LTR9B LTR ERV1 -86 558 446 * 747 143 20 122 chr1 14539026 14539222 -228125131 + MLT1K LTR MaLR 404 579 -9 2092 95 0 0 chr1 14539737 14540011 -228124342 + AluSx SINE Alu 25 298 -14 590 242 107 70 chr1 14540191 14540215 -228124138 + MIR SINE MIR 2 24 -238 931 198 127 0 chr1 14540215 14540412 -228123941 - MER58A DNA MER1_type -2 222 1 590 242 107 70 chr1 14540412 14540631 -228123722 + MIR SINE MIR 24 254 -8 314 228 120 43 chr1 14540911 14541003 -228123350 + MIR SINE MIR 29 127 -81 309 221 91 0 chr1 14541583 14541660 -228122693 + MER91C DNA MER1_type 22 105 -35 1825 126 35 3 chr1 14541682 14541968 -228122385 - AluSx SINE Alu -17 295 1 559 301 18 0 chr1 14542218 14542384 -228121969 - MIR SINE MIR -30 232 64 2436 48 0 0 chr1 14543225 14543518 -228120835 + AluY SINE Alu 1 293 -18 636 223 40 7 chr1 14543627 14543775 -228120578 + MIR SINE MIR 71 223 -39 2063 97 3 17 chr1 14543862 14544161 -228120192 - AluSx SINE Alu -17 295 1 2542 185 12 18 chr1 14544271 14544773 -228119580 + L1MB3 LINE L1 5683 6181 -2 596 219 0 58 chr1 14544818 14544973 -228119380 + L1MB7 LINE L1 6029 6174 -10 630 238 6 55 chr1 14544984 14545165 -228119188 + L1MA10 LINE L1 6163 6334 0 353 236 32 32 chr1 14545165 14545288 -228119065 - L1MC/D LINE L1 -1999 5809 5687 477 190 40 10 chr1 14546260 14546386 -228117967 - MIR SINE MIR -43 165 32 236 75 0 25 chr1 14546498 14546538 -228117815 + (TTTTTA)n Simple_repeat Simple_repeat 3 41 0 247 269 17 42 chr1 14546646 14546683 -228117670 - HAL1b LINE L1 -36 1312 1276 300 242 82 41 chr1 14546683 14546877 -228117476 - L1ME4a LINE L1 -86 6035 1197 1851 110 62 0 chr1 14547164 14547323 -228117030 - AluSg SINE Alu -20 290 106 2311 72 0 0 chr1 14547323 14547614 -228116739 - AluY SINE Alu -5 306 16 1851 110 62 0 chr1 14547614 14547727 -228116626 - AluSg SINE Alu -204 106 1 21 36 0 0 chr1 14547889 14547917 -228116436 + AT_rich Low_complexity Low_complexity 1 28 0 523 241 154 18 chr1 14547929 14548149 -228116204 - MIR SINE MIR 0 262 13 3837 229 25 12 chr1 14548195 14548276 -228116077 + L1M4 LINE L1 2315 2393 -3753 2035 115 20 3 chr1 14548276 14548571 -228115782 + AluSx SINE Alu 1 300 -12 3837 229 25 12 chr1 14548571 14549491 -228114862 + L1M4 LINE L1 2393 3329 -2817 7929 18 0 1 chr1 14549527 14550490 -228113863 + L1PA3 LINE L1 5191 6152 -3 383 157 52 29 chr1 14550524 14550696 -228113657 + (TA)n Simple_repeat Simple_repeat 2 177 0 2209 251 11 5 chr1 14550714 14551271 -228113082 + L1M4 LINE L1 3329 3888 -2258 797 136 53 0 chr1 14551280 14551449 -228112904 - L1MC/D LINE L1 -908 5436 5259 3209 144 43 36 chr1 14551451 14552082 -228112271 + L1MC2 LINE L1 5695 6329 -15 1612 189 17 0 chr1 14552082 14552384 -228111969 + AluJo SINE Alu 1 307 -5 2305 90 3 0 chr1 14552497 14552797 -228111556 - AluSx SINE Alu -11 301 1 465 329 13 0 chr1 14553156 14553308 -228111045 - MIR SINE MIR -6 256 103 7517 182 21 23 chr1 14553308 14553908 -228110445 + L1MB2 LINE L1 3637 4237 -1934 279 79 0 0 chr1 14553908 14553946 -228110407 + (CA)n Simple_repeat Simple_repeat 1 38 0 7517 182 21 23 chr1 14553946 14554666 -228109687 + L1MB2 LINE L1 4237 4957 -1214 2436 74 0 0 chr1 14554666 14554976 -228109377 + AluY SINE Alu 1 310 -1 7517 182 21 23 chr1 14554976 14555919 -228108434 + L1MB2 LINE L1 4957 5897 -274 735 132 9 0 chr1 14555927 14556033 -228108320 + FLAM_C SINE Alu 12 118 -25 727 273 20 20 chr1 14556033 14556231 -228108122 + MIR SINE MIR 64 261 -1 412 263 46 26 chr1 14556235 14556387 -228107966 + MIR SINE MIR 20 174 -88 204 40 0 0 chr1 14556448 14556473 -228107880 + (TG)n Simple_repeat Simple_repeat 1 25 0 826 190 0 0 chr1 14556476 14556618 -228107735 - FAM SINE Alu -26 159 18 820 227 29 19 chr1 14557164 14557371 -228106982 + MIR SINE MIR 39 247 -15 2509 236 23 18 chr1 14557522 14558095 -228106258 + MLT1E2 LTR MaLR 1 576 -50 373 260 179 27 chr1 14558108 14558331 -228106022 - MIR SINE MIR -1 261 5 531 238 16 88 chr1 14559031 14559224 -228105129 + MIR SINE MIR 40 218 -44 3414 153 9 102 chr1 14559350 14559607 -228104746 + L1MB3 LINE L1 5445 5724 -459 2127 92 0 10 chr1 14559607 14559902 -228104451 + AluSx SINE Alu 9 300 -12 3414 153 9 102 chr1 14559902 14560345 -228104008 + L1MB3 LINE L1 5724 6065 -118 1822 140 0 14 chr1 14560345 14560631 -228103722 + AluSx SINE Alu 1 282 -30 3414 153 9 102 chr1 14560631 14560725 -228103628 + L1MB3 LINE L1 6065 6166 -17 358 318 175 21 chr1 14561112 14561398 -228102955 + L1ME4a LINE L1 5398 5727 -2081 2222 89 23 0 chr1 14561813 14562115 -228102238 - AluSx SINE Alu -3 309 1 198 278 28 42 chr1 14562168 14562240 -228102113 + MER5A DNA MER1_type 61 131 -58 474 266 179 24 chr1 14562498 14562750 -228101603 + L2 LINE L2 2671 2961 -353 336 266 39 52 chr1 14563030 14563184 -228101169 + L1ME4a LINE L1 5964 6115 -6 608 259 207 0 chr1 14564034 14564227 -228100126 - MIR SINE MIR -12 250 18 2176 257 35 27 chr1 14564479 14565211 -228099142 + L1M4 LINE L1 3954 4691 -1455 369 0 0 0 chr1 14565296 14565337 -228099016 + (CA)n Simple_repeat Simple_repeat 2 42 0 560 203 42 14 chr1 14565343 14565486 -228098867 + L1MD2 LINE L1 6203 6349 -10 2150 202 68 7 chr1 14565894 14566349 -228098004 + MER66B LTR ERV1 1 483 -3 596 190 177 21 chr1 14567097 14567186 -228097167 + MIR SINE MIR 60 134 -128 1798 142 59 0 chr1 14567186 14567474 -228096879 - AluJb SINE Alu -7 305 1 596 190 177 21 chr1 14567474 14567543 -228096810 + MIR SINE MIR 134 243 -19 832 153 28 0 chr1 14567642 14567786 -228096567 - FRAM SINE Alu -26 150 3 350 269 58 58 chr1 14567967 14568175 -228096178 - L1MC4 LINE L1 -1 8041 7834 636 218 78 0 chr1 14568428 14568570 -228095783 - MIR SINE MIR -7 255 103 1962 238 42 26 chr1 14569422 14569592 -228094761 + LTR40a LTR ERVL 11 177 -342 2216 113 0 19 chr1 14569592 14569901 -228094452 + AluSx SINE Alu 1 303 -9 1962 238 42 26 chr1 14569901 14570231 -228094122 + LTR40a LTR ERVL 177 519 0 296 198 86 37 chr1 14570231 14570312 -228094041 + L2 LINE L2 3187 3271 -1 315 284 23 0 chr1 14571387 14571489 -228092864 - MIR SINE MIR -62 146 42 1946 130 167 34 chr1 14572145 14572523 -228091830 + MSTA LTR MaLR 1 428 0 404 289 20 47 chr1 14572597 14572746 -228091607 - MER5A DNA MER1_type -26 163 19 343 267 60 9 chr1 14572921 14573037 -228091316 + L2 LINE L2 2916 3037 -276 335 249 99 24 chr1 14573057 14573202 -228091151 + L1M4 LINE L1 3048 3202 -2944 2739 135 26 2 chr1 14573237 14573659 -228090694 + MSTB1 LTR MaLR 1 432 0 532 164 0 113 chr1 14573660 14573819 -228090534 + L2 LINE L2 3130 3270 -43 246 221 91 26 chr1 14574521 14574598 -228089755 - MIR SINE MIR -133 129 48 433 266 93 7 chr1 14575518 14575657 -228088696 + MIR SINE MIR 112 262 0 438 310 16 12 chr1 14576081 14576226 -228088127 - MIR SINE MIR -46 162 20 2443 77 0 0 chr1 14576232 14576532 -228087821 - AluSg SINE Alu -10 300 1 1187 188 18 98 chr1 14576637 14576799 -228087554 - L1ME3A LINE L1 -68 6102 5978 1754 142 36 4 chr1 14576799 14577112 -228087241 - AluSq SINE Alu 0 322 1 1187 188 18 98 chr1 14577112 14577284 -228087069 - L1ME3A LINE L1 -192 5978 5794 1842 180 58 116 chr1 14577284 14577500 -228086853 - MLT1E LTR MaLR 0 593 366 2437 97 0 0 chr1 14577500 14577808 -228086545 - AluSg SINE Alu -2 308 1 1842 180 58 116 chr1 14577808 14577824 -228086529 - MLT1E LTR MaLR -227 366 351 1860 169 10 16 chr1 14577824 14578138 -228086215 - AluJo SINE Alu 0 312 1 1842 180 58 116 chr1 14578138 14578488 -228085865 - MLT1E LTR MaLR -242 351 44 677 280 11 0 chr1 14578505 14578687 -228085666 - L1ME3A LINE L1 -479 5691 5508 218 293 24 24 chr1 14578774 14578856 -228085497 - MER5A DNA MER1_type -46 143 62 * 317 314 68 25 chr1 14578840 14578868 -228085485 + L2 LINE L2 3191 3216 -97 2351 115 0 3 chr1 14578868 14579180 -228085173 - AluSx SINE Alu -1 311 1 317 314 68 25 chr1 14579180 14579269 -228085084 + L2 LINE L2 3216 3313 0 1814 167 3 3 chr1 14579278 14579560 -228084793 + AluJo SINE Alu 1 282 -30 2273 116 7 0 chr1 14580215 14580516 -228083837 - AluSg SINE Alu -7 303 1 247 368 11 28 chr1 14580988 14581170 -228083183 - L2 LINE L2 -209 3063 2885 2725 99 8 0 chr1 14581303 14581675 -228082678 - THE1C LTR MaLR 0 375 1 999 268 32 59 chr1 14581676 14582205 -228082148 - MLT1K LTR MaLR -37 551 5 305 275 14 49 chr1 14582257 14582399 -228081954 + Charlie8 DNA MER1_type 119 255 -2162 2311 100 10 0 chr1 14582584 14582884 -228081469 + AluSx SINE Alu 1 303 -9 4384 171 71 23 chr1 14582884 14583512 -228080841 - L1PA16 LINE L1 -11 6138 5542 183 42 0 0 chr1 14583512 14583536 -228080817 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4384 171 71 23 chr1 14583536 14584047 -228080306 - L1PA16 LINE L1 -607 5542 461 3015 135 29 38 chr1 14584418 14584829 -228079524 + L1PA16 LINE L1 5623 6029 -137 2441 93 0 3 chr1 14584829 14585140 -228079213 + AluY SINE Alu 1 310 -1 3015 135 29 38 chr1 14585140 14585276 -228079077 + L1PA16 LINE L1 6029 6165 -1 936 277 88 44 chr1 14585435 14586048 -228078305 - L1MC5 LINE L1 -62 7899 7260 2053 159 0 0 chr1 14586180 14586488 -228077865 - AluSx SINE Alu -2 310 3 2674 147 9 0 chr1 14586498 14586926 -228077427 - L1MB2 LINE L1 -2 6169 5738 2144 140 0 0 chr1 14586934 14587234 -228077119 - AluSx SINE Alu -12 300 1 659 223 52 85 chr1 14587234 14587396 -228076957 - L1MC4 LINE L1 -733 7228 7062 1975 166 3 0 chr1 14587396 14587697 -228076656 - AluJb SINE Alu -10 302 1 659 223 52 85 chr1 14587697 14587947 -228076406 - L1MC4 LINE L1 -899 7062 6855 801 154 39 133 chr1 14588302 14588536 -228075817 + MER20 DNA MER1_type 6 217 -2 2131 119 34 0 chr1 14588923 14589218 -228075135 - AluSx SINE Alu -7 305 1 2506 66 0 10 chr1 14589485 14589790 -228074563 - AluY SINE Alu -9 302 1 2152 136 0 7 chr1 14590186 14590495 -228073858 + AluSx SINE Alu 4 310 -2 870 148 164 5 chr1 14591052 14591241 -228073112 - MER20 DNA MER1_type 0 219 1 246 305 42 0 chr1 14592132 14592227 -228072126 + MIR3 SINE MIR 66 164 -44 237 204 0 0 chr1 14592328 14592372 -228071981 - MER103 DNA DNA -46 120 77 449 241 170 54 chr1 14592372 14592666 -228071687 + L2 LINE L2 2959 3286 -27 585 161 0 28 chr1 14593401 14593544 -228070809 + C-rich Low_complexity Low_complexity 2 140 0 1950 142 25 0 chr1 14593544 14593826 -228070527 - AluSx SINE Alu -23 289 1 367 233 97 19 chr1 14594610 14594713 -228069640 + L2 LINE L2 3203 3313 0 2140 120 3 23 chr1 14594949 14595258 -228069095 + AluSq SINE Alu 1 303 -10 289 250 11 0 chr1 14595962 14596050 -228068303 + L1ME3A LINE L1 5857 5945 -225 1684 166 52 3 chr1 14596131 14596250 -228068103 + AluJo SINE Alu 1 113 -199 357 24 0 0 chr1 14596250 14596292 -228068061 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1684 166 52 3 chr1 14596292 14596462 -228067891 + AluJo SINE Alu 113 304 -8 395 286 46 38 chr1 14596621 14596874 -228067479 + L2 LINE L2 2731 2992 -280 32 43 0 0 chr1 14596875 14596921 -228067432 + AT_rich Low_complexity Low_complexity 1 46 0 1645 119 0 37 chr1 14596945 14597188 -228067165 - AluJo SINE Alu -78 234 1 548 279 56 78 chr1 14597210 14597529 -228066824 + L2 LINE L2 3002 3313 0 331 250 62 54 chr1 14598933 14599045 -228065308 - MIR SINE MIR -141 121 9 219 167 0 0 chr1 14599150 14599192 -228065161 + CT-rich Low_complexity Low_complexity 1 42 0 204 125 0 0 chr1 14599236 14599268 -228065085 + (TTCCC)n Simple_repeat Simple_repeat 4 35 0 1810 159 27 3 chr1 14599270 14599565 -228064788 - AluJo SINE Alu -1 311 10 468 327 204 0 chr1 14599743 14599954 -228064399 - MIR SINE MIR -7 255 2 560 244 18 60 chr1 14600718 14600886 -228063467 - MIR SINE MIR -39 223 63 2225 80 0 4 chr1 14600981 14601256 -228063097 - AluSx SINE Alu -38 274 1 357 283 76 28 chr1 14601588 14601733 -228062620 + MIR SINE MIR 22 173 -89 947 272 174 22 chr1 14601771 14601967 -228062386 - L2 LINE L2 0 3313 3148 2326 81 0 29 chr1 14601967 14602275 -228062078 + AluSg SINE Alu 1 299 -11 947 272 174 22 chr1 14602275 14602446 -228061907 - L2 LINE L2 -165 3148 2890 188 226 196 10 chr1 14602570 14602672 -228061681 - MIR3 SINE MIR -83 125 5 1717 208 65 36 chr1 14602700 14603169 -228061184 + MLT1D LTR MaLR 3 384 -6 313 178 6 86 chr1 14604056 14604219 -228060134 + T-rich Low_complexity Low_complexity 5 154 0 441 294 61 6 chr1 14604275 14604438 -228059915 - MIR SINE MIR -61 201 30 2098 163 5 33 chr1 14604864 14605095 -228059258 - MLT1B LTR MaLR 0 390 173 1570 148 37 4 chr1 14605095 14605339 -228059014 - AluJb SINE Alu -5 307 56 2098 163 5 33 chr1 14605339 14605505 -228058848 - MLT1B LTR MaLR -217 173 4 2281 100 0 7 chr1 14606093 14606392 -228057961 + AluSq SINE Alu 1 297 -16 2322 92 0 3 chr1 14606810 14607102 -228057251 + AluSx SINE Alu 1 291 -21 1431 228 76 57 chr1 14607120 14607593 -228056760 + MLT1J LTR MaLR 15 496 -15 262 160 0 0 chr1 14607788 14607843 -228056510 + MIR SINE MIR 101 154 -108 959 254 196 15 chr1 14608152 14608561 -228055792 + MLT1K LTR MaLR 9 491 -97 668 224 0 0 chr1 14608875 14608991 -228055362 + FLAM_C SINE Alu 2 117 -26 279 79 0 0 chr1 14609111 14609149 -228055204 + (CA)n Simple_repeat Simple_repeat 1 38 0 586 250 12 44 chr1 14609149 14609309 -228055044 + MER63A DNA MER1_type 54 208 -2 245 279 207 0 chr1 14609725 14609836 -228054517 + MIR SINE MIR 17 150 -112 991 170 53 74 chr1 14610056 14610296 -228054057 + MER33 DNA MER1_type 48 283 -2302 2061 131 3 31 chr1 14610296 14610616 -228053737 + AluJb SINE Alu 1 311 -1 991 170 53 74 chr1 14610616 14610658 -228053695 + MER33 DNA MER1_type 283 324 0 749 192 91 19 chr1 14611176 14611384 -228052969 + Charlie5 DNA MER1_type 2360 2582 -30 393 235 50 34 chr1 14611391 14611510 -228052843 + L2 LINE L2 3193 3313 0 2163 83 87 14 chr1 14611671 14611960 -228052393 + AluSx SINE Alu 1 310 -2 2321 101 3 7 chr1 14612777 14613085 -228051268 + AluSg1 SINE Alu 1 307 -2 268 343 10 0 chr1 14613897 14613996 -228050357 + MIR SINE MIR 64 163 -99 1757 181 66 97 chr1 14614146 14614441 -228049912 - MLT1D LTR MaLR -18 487 213 2285 113 0 0 chr1 14614441 14614752 -228049601 + AluY SINE Alu 1 311 0 1757 181 66 97 chr1 14614752 14614959 -228049394 - MLT1D LTR MaLR -292 213 1 372 344 26 0 chr1 14615231 14615382 -228048971 - MIR SINE MIR -95 167 13 1952 121 3 52 chr1 14616172 14616477 -228047876 + AluSx SINE Alu 1 290 -22 462 258 177 39 chr1 14617120 14617453 -228046900 + MLT1K LTR MaLR 137 515 -73 250 303 122 25 chr1 14618640 14618878 -228045475 + L2 LINE L2 2579 2839 -475 231 262 136 19 chr1 14618885 14618988 -228045365 - MIR SINE MIR -56 206 92 322 245 11 43 chr1 14620055 14620149 -228044204 + MIR3 SINE MIR 115 205 -3 1034 183 39 10 chr1 14620529 14620737 -228043616 - MER20 DNA MER1_type 0 219 6 662 327 92 6 chr1 14620808 14621154 -228043199 + L2 LINE L2 2493 2868 -446 185 208 151 0 chr1 14621149 14621202 -228043151 + MER5A DNA MER1_type 9 69 -120 * 2070 91 54 0 chr1 14621203 14621479 -228042874 + AluSc SINE Alu 1 291 -18 270 136 0 0 chr1 14621482 14621526 -228042827 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 198 204 23 0 chr1 14621526 14621570 -228042783 + MER5A DNA MER1_type 61 105 -84 405 258 62 113 chr1 14621917 14622192 -228042161 - MIR SINE MIR 0 262 2 2025 145 0 14 chr1 14622465 14622762 -228041591 + AluSx SINE Alu 1 293 -19 427 248 16 7 chr1 14622920 14623054 -228041299 - MIR SINE MIR -62 146 52 478 248 44 22 chr1 14623134 14623271 -228041082 - MIR SINE MIR -75 187 48 2202 110 0 3 chr1 14623320 14623648 -228040705 - AluSp SINE Alu 0 329 3 656 294 22 0 chr1 14624251 14624435 -228039918 - MIR SINE MIR 0 262 75 651 262 82 0 chr1 14624573 14624756 -228039597 + MIR SINE MIR 1 198 -64 282 325 17 26 chr1 14624793 14624910 -228039443 - MIR SINE MIR -91 171 56 207 268 49 41 chr1 14625378 14625501 -228038852 + MER5A DNA MER1_type 17 140 -49 1093 234 105 72 chr1 14625514 14625727 -228038626 - L1ME2 LINE L1 -10 6154 5950 1992 144 10 3 chr1 14625727 14626026 -228038327 - AluJb SINE Alu -11 301 1 1093 234 105 72 chr1 14626026 14626355 -228037998 - L1ME2 LINE L1 -214 5950 5594 377 235 12 0 chr1 14626810 14626895 -228037458 + MIR SINE MIR 81 166 -96 430 277 73 7 chr1 14627009 14627146 -228037207 + MER5A DNA MER1_type 40 185 -4 198 0 0 0 chr1 14627817 14627839 -228036514 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 452 273 181 42 chr1 14628221 14628459 -228035894 + Charlie8 DNA MER1_type 5 275 -2142 183 267 12 93 chr1 14628795 14628881 -228035472 - L2 LINE L2 -6 3307 3229 614 296 178 15 chr1 14629332 14629635 -228034718 - L2 LINE L2 0 3313 2948 2337 108 22 11 chr1 14629635 14629995 -228034358 + THE1B LTR MaLR 1 364 0 614 296 178 15 chr1 14629995 14630029 -228034324 - L2 LINE L2 -365 2948 2921 2342 122 0 0 chr1 14630098 14630410 -228033943 - AluSq SINE Alu -1 312 1 1479 168 75 46 chr1 14630540 14630886 -228033467 + MLT1A2 LTR MaLR 8 363 -11 1661 191 17 7 chr1 14630985 14631283 -228033070 + AluJo SINE Alu 1 301 -11 2587 71 3 3 chr1 14632007 14632316 -228032037 + AluSq SINE Alu 1 309 -4 449 151 0 0 chr1 14632527 14632600 -228031753 - Tigger7 DNA MER2_type -14 2573 2501 1425 226 0 0 chr1 14632615 14632880 -228031473 - Tigger7 DNA MER2_type -2222 265 1 406 254 9 18 chr1 14632890 14633002 -228031351 - MIR SINE MIR -87 121 15 252 207 23 23 chr1 14633032 14633119 -228031234 + CT-rich Low_complexity Low_complexity 1 87 0 2053 135 0 35 chr1 14633119 14633431 -228030922 - AluJb SINE Alu -9 303 3 477 253 40 27 chr1 14633458 14633608 -228030745 - MER5A DNA MER1_type 0 189 38 1465 220 94 3 chr1 14633746 14634087 -228030266 + MLT2E LTR ERVL 1 372 -256 355 268 65 16 chr1 14634120 14634243 -228030110 + MLT2E LTR ERVL 488 616 -12 733 154 9 154 chr1 14634291 14634511 -228029842 + MER5A DNA MER1_type 1 188 -1 2172 55 0 0 chr1 14634540 14634793 -228029560 + AluY SINE Alu 41 293 -18 651 144 0 9 chr1 14634803 14634914 -228029439 + L1MB4 LINE L1 6031 6140 -40 1673 113 169 15 chr1 14634915 14635181 -228029172 + AluSx SINE Alu 1 307 -5 239 309 154 45 chr1 14635546 14635883 -228028470 - L1ME4a LINE L1 -17 6104 5731 265 176 0 0 chr1 14636325 14636376 -228027977 + MIR SINE MIR 41 91 -171 274 98 0 59 chr1 14636421 14636472 -228027881 + MLT1J1 LTR MaLR 286 333 -113 210 244 0 0 chr1 14637139 14637180 -228027173 + polypyrimidine Low_complexity Low_complexity 3 43 0 357 262 71 76 chr1 14637407 14637617 -228026736 + HAL1 LINE L1 2299 2507 0 2032 203 74 25 chr1 14637913 14638171 -228026182 + L1ME1 LINE L1 5574 5818 -348 2701 51 0 0 chr1 14638171 14638482 -228025871 - AluY SINE Alu 0 311 1 2032 203 74 25 chr1 14638482 14638774 -228025579 + L1ME1 LINE L1 5818 6151 -15 2160 133 7 0 chr1 14638788 14639089 -228025264 - AluSx SINE Alu -9 303 1 310 271 124 38 chr1 14639368 14639578 -228024775 - L1ME4a LINE L1 -6 6115 5888 588 107 24 0 chr1 14639583 14639667 -228024686 - AluSg/x SINE Alu -21 291 206 318 361 64 5 chr1 14639699 14639918 -228024435 - L1ME4a LINE L1 -259 5862 5631 26 30 0 0 chr1 14640059 14640092 -228024261 + AT_rich Low_complexity Low_complexity 1 33 0 745 214 65 0 chr1 14640204 14640358 -228023995 - AluJb SINE Alu -12 300 137 304 290 85 80 chr1 14640370 14640427 -228023926 - L1ME4a LINE L1 -813 5333 5278 2603 78 0 0 chr1 14640427 14640736 -228023617 + AluSc SINE Alu 1 309 0 304 290 85 80 chr1 14640736 14640902 -228023451 - L1ME4a LINE L1 -868 5278 5109 2684 172 21 71 chr1 14640929 14641398 -228022955 + L1MD3 LINE L1 7415 7849 -146 2331 82 0 4 chr1 14641398 14641679 -228022674 + AluSx SINE Alu 1 280 -32 2684 172 21 71 chr1 14641679 14641818 -228022535 + L1MD3 LINE L1 7849 7993 -2 335 228 119 40 chr1 14641864 14641965 -228022388 - L1ME4a LINE L1 -385 5736 5628 357 270 22 113 chr1 14642257 14642442 -228021911 + L2 LINE L2 3140 3307 -6 3286 142 20 12 chr1 14642485 14643011 -228021342 - L1MB3 LINE L1 -2 6181 5661 1110 159 269 45 chr1 14643011 14643066 -228021287 + MSTB1 LTR MaLR 1 42 -390 2164 125 10 0 chr1 14643066 14643361 -228020992 + AluSx SINE Alu 1 298 -14 1110 159 269 45 chr1 14643361 14643585 -228020768 + MSTB1 LTR MaLR 42 215 -217 2256 80 28 0 chr1 14643585 14643871 -228020482 - AluSc SINE Alu -15 294 1 1110 159 269 45 chr1 14643871 14643943 -228020410 + MSTB1 LTR MaLR 215 432 0 3286 142 20 12 chr1 14643943 14644006 -228020347 - L1MB3 LINE L1 -522 5661 5587 2068 131 10 0 chr1 14644012 14644303 -228020050 - AluSx SINE Alu -18 294 1 291 323 61 24 chr1 14644412 14644576 -228019777 + L2 LINE L2 2912 3081 -191 2393 117 0 0 chr1 14644955 14645262 -228019091 + AluSx SINE Alu 2 308 -4 2126 87 0 0 chr1 14645716 14645980 -228018373 + AluSc SINE Alu 44 307 -2 409 290 75 11 chr1 14646532 14646718 -228017635 + MER112 DNA MER1_type 34 231 -29 767 153 0 0 chr1 14647435 14647553 -228016800 + FLAM_C SINE Alu 1 118 -15 367 304 152 0 chr1 14648029 14648167 -228016186 + MIR3 SINE MIR 40 198 -10 576 209 72 7 chr1 14648700 14648853 -228015500 + MIR3 SINE MIR 35 197 -11 202 351 0 0 chr1 14649595 14649652 -228014701 + L2 LINE L2 2682 2738 -576 329 250 43 33 chr1 14649665 14649757 -228014596 + L2 LINE L2 3215 3307 -6 236 244 37 0 chr1 14649859 14649941 -228014412 + L2 LINE L2 2905 2989 -283 348 116 227 0 chr1 14650089 14650166 -228014187 - MIR SINE MIR -37 171 70 24 0 0 0 chr1 14651374 14651398 -228012955 + GC_rich Low_complexity Low_complexity 1 24 0 201 243 0 0 chr1 14652101 14652138 -228012215 + (CGTG)n Simple_repeat Simple_repeat 1 37 0 499 305 57 24 chr1 14653329 14653539 -228010814 - MIR SINE MIR -25 237 21 209 188 21 21 chr1 14653601 14653649 -228010704 + L2 LINE L2 3265 3312 -1 500 304 110 0 chr1 14654244 14654435 -228009918 - MIR SINE MIR -44 218 7 1956 173 58 78 chr1 14654447 14654962 -228009391 + MLT1D LTR MaLR 1 505 0 438 285 22 95 chr1 14655105 14655284 -228009069 + MIR SINE MIR 49 214 -48 431 319 40 28 chr1 14655524 14655775 -228008578 + L1MC4a LINE L1 5632 5885 -1923 2134 107 27 10 chr1 14655803 14656102 -228008251 - AluSx SINE Alu -8 304 1 1782 170 0 30 chr1 14656418 14656718 -228007635 - AluJo SINE Alu -21 291 1 381 227 189 0 chr1 14657484 14657616 -228006737 - MLT1L LTR MaLR -326 289 133 1373 163 0 23 chr1 14657810 14658031 -228006322 - AluJo SINE Alu -91 221 6 606 258 94 30 chr1 14658314 14658562 -228005791 - MIR SINE MIR 0 262 5 950 184 43 19 chr1 14660036 14660243 -228004110 - MER20 DNA MER1_type -1 218 7 1848 155 10 3 chr1 14660252 14660543 -228003810 + AluJb SINE Alu 1 293 -19 417 342 0 0 chr1 14660665 14660782 -228003571 + MIR SINE MIR 30 146 -62 442 252 0 10 chr1 14660790 14660893 -228003460 + L2 LINE L2 3207 3308 -5 1510 172 71 88 chr1 14661066 14661178 -228003175 + L1MD2 LINE L1 5712 5824 -535 2002 143 0 13 chr1 14661178 14661485 -228002868 + AluSx SINE Alu 1 303 -9 1510 172 71 88 chr1 14661485 14661722 -228002631 + L1MD2 LINE L1 5824 6064 -295 5195 88 10 19 chr1 14661722 14662531 -228001822 - L1MA3 LINE L1 0 6305 5504 1510 172 71 88 chr1 14662531 14662547 -228001806 + L1MD2 LINE L1 6064 6079 -280 2204 117 0 23 chr1 14662547 14662855 -228001498 - AluSx SINE Alu -11 301 1 1510 172 71 88 chr1 14662855 14662940 -228001413 + L1MD2 LINE L1 6079 6156 -203 962 224 46 25 chr1 14662943 14663184 -228001169 + L1MD2 LINE L1 6102 6347 -12 405 284 142 42 chr1 14663583 14663844 -228000509 + MER102b DNA MER1_type 4 290 -51 2277 105 3 0 chr1 14663859 14664155 -228000198 - AluSg SINE Alu -13 297 1 227 265 31 41 chr1 14664810 14664908 -227999445 - MIR SINE MIR -118 144 48 2398 116 7 0 chr1 14665840 14666191 -227998162 - AluSx SINE Alu 0 353 1 613 253 13 0 chr1 14666375 14666529 -227997824 + MIR SINE MIR 8 163 -99 1382 86 11 0 chr1 14666600 14666774 -227997579 + AluSq SINE Alu 1 176 -137 * 1395 115 0 0 chr1 14666773 14666955 -227997398 + AluSg/x SINE Alu 112 293 -19 300 154 0 0 chr1 14666955 14667007 -227997346 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 1996 247 17 19 chr1 14667633 14667699 -227996654 - L1ME3 LINE L1 0 6162 6097 2349 107 0 0 chr1 14667699 14667997 -227996356 - AluSq SINE Alu -15 298 1 1996 247 17 19 chr1 14667997 14668461 -227995892 - L1ME3 LINE L1 -65 6097 5633 2119 121 0 0 chr1 14668670 14668974 -227995379 + AluSx SINE Alu 5 308 0 489 284 60 0 chr1 14669090 14669224 -227995129 - MIR3 SINE MIR -35 173 32 7706 78 14 3 chr1 14669231 14670190 -227994163 + LTR5 LTR ERVK 1 969 0 1185 150 38 0 chr1 14670339 14670552 -227993801 - L1PA16 LINE L1 0 6166 5946 2292 97 0 17 chr1 14670602 14670902 -227993451 + AluSx SINE Alu 1 295 -17 567 237 37 32 chr1 14670902 14671092 -227993261 + L2 LINE L2 2775 2965 -349 634 293 78 23 chr1 14671099 14671355 -227992998 - MLT1K LTR MaLR -138 450 181 211 244 0 0 chr1 14671443 14671488 -227992865 + (TAA)n Simple_repeat Simple_repeat 2 46 0 353 282 94 40 chr1 14671625 14671774 -227992579 + MER5B DNA MER1_type 1 157 -21 2490 102 19 8 chr1 14671784 14672155 -227992198 - THE1C LTR MaLR 0 375 1 193 266 25 25 chr1 14672183 14672262 -227992091 + MER5A DNA MER1_type 111 189 0 657 145 34 0 chr1 14672826 14672943 -227991410 + FLAM_C SINE Alu 2 122 -21 441 0 0 0 chr1 14672944 14672993 -227991360 + (TG)n Simple_repeat Simple_repeat 2 50 0 2268 113 7 0 chr1 14673095 14673388 -227990965 + AluSx SINE Alu 3 297 -15 809 154 0 0 chr1 14673848 14673971 -227990382 + FLAM_A SINE Alu 1 123 -10 690 248 6 12 chr1 14674004 14674165 -227990188 + MIR SINE MIR 103 262 0 1246 218 115 91 chr1 14674334 14674674 -227989679 - MLT1F1 LTR MaLR -2 565 190 243 0 0 0 chr1 14674674 14674701 -227989652 + (CA)n Simple_repeat Simple_repeat 2 28 0 1246 218 115 91 chr1 14674701 14674890 -227989463 - MLT1F1 LTR MaLR -377 190 7 512 200 0 0 chr1 14674971 14675056 -227989297 - AluJ/FLAM SINE Alu -226 86 2 1499 171 142 67 chr1 14675083 14675457 -227988896 + MER93a LTR ERV1 1 402 0 1414 199 67 103 chr1 14675549 14676071 -227988282 - MLT1D LTR MaLR 0 505 3 213 276 82 20 chr1 14676925 14677023 -227987330 + MER5A DNA MER1_type 39 142 -47 268 325 35 35 chr1 14677039 14677153 -227987200 - MER5B DNA MER1_type -62 116 3 * 400 275 63 14 chr1 14677153 14677273 -227987080 + L3 LINE CR1 907 1033 -544 471 258 138 6 chr1 14677282 14677449 -227986904 + MIR SINE MIR 48 236 -26 2377 90 0 10 chr1 14677671 14677972 -227986381 + AluSx SINE Alu 1 298 -14 225 218 18 36 chr1 14678792 14678847 -227985506 + L2 LINE L2 3219 3272 0 1543 148 45 36 chr1 14679221 14679752 -227984601 - LTR36 LTR ERV1 0 611 2 1644 201 60 5 chr1 14680037 14680405 -227983948 + MLT1B LTR MaLR 3 390 0 241 203 104 38 chr1 14681240 14681371 -227982982 - MIR SINE MIR -21 187 34 2209 116 0 0 chr1 14681554 14681846 -227982507 + AluSx SINE Alu 21 312 0 523 276 56 20 chr1 14682170 14682366 -227981987 + MIR SINE MIR 6 208 -54 822 186 0 14 chr1 14682367 14682512 -227981841 + MER20 DNA MER1_type 3 145 -74 960 131 0 14 chr1 14682522 14682667 -227981686 + FLAM_C SINE Alu 1 143 0 677 306 52 41 chr1 14683092 14683435 -227980918 + MLT1K LTR MaLR 214 560 -28 1267 168 37 144 chr1 14683445 14683819 -227980534 - MSTB LTR MaLR 0 426 93 818 60 0 0 chr1 14683819 14683919 -227980434 + AluY SINE Alu 212 311 0 698 147 0 0 chr1 14683919 14684028 -227980325 - MSTB LTR MaLR -319 109 1 967 209 14 24 chr1 14684184 14684395 -227979958 + MER3 DNA MER1_type 1 209 0 211 286 184 7 chr1 14684802 14684949 -227979404 + MIR SINE MIR 46 218 -44 210 222 37 0 chr1 14685686 14685740 -227978613 + L2 LINE L2 2920 2975 -338 1849 149 40 7 chr1 14685860 14686156 -227978197 + AluJo SINE Alu 1 306 -6 189 305 183 0 chr1 14686192 14686274 -227978079 + L2 LINE L2 3133 3229 -43 314 255 137 0 chr1 14686279 14686381 -227977972 + L2 LINE L2 2955 3070 -243 296 253 81 0 chr1 14686823 14686910 -227977443 + MER5A DNA MER1_type 9 102 -87 417 304 68 19 chr1 14687298 14687459 -227976894 + MIR SINE MIR 32 200 -62 292 279 93 16 chr1 14689692 14689821 -227974532 - MIR SINE MIR -57 205 67 201 182 239 0 chr1 14691140 14691228 -227973125 + MIR SINE MIR 75 183 -79 760 248 24 67 chr1 14691486 14691657 -227972696 + MIR SINE MIR 20 178 -84 1479 98 39 0 chr1 14691657 14691860 -227972493 + AluSg/x SINE Alu 84 294 -18 760 248 24 67 chr1 14691860 14691942 -227972411 + MIR SINE MIR 178 262 0 609 203 31 126 chr1 14692055 14692316 -227972037 - MER106B DNA MER1_type 0 1059 1 285 310 43 48 chr1 14692578 14692765 -227971588 - MER5A DNA MER1_type 0 189 4 405 0 0 0 chr1 14693153 14693198 -227971155 + (CA)n Simple_repeat Simple_repeat 2 46 0 470 293 113 9 chr1 14693229 14693451 -227970902 - MIR SINE MIR -17 245 1 1028 208 0 32 chr1 14693631 14693852 -227970501 + MER58A DNA MER1_type 2 215 -9 1835 102 8 42 chr1 14693950 14694214 -227970139 + AluSx SINE Alu 1 255 -57 293 0 0 26 chr1 14694230 14694268 -227970085 + (CAA)n Simple_repeat Simple_repeat 2 38 0 307 321 28 9 chr1 14694657 14694780 -227969573 - MIR3 SINE MIR -53 155 29 246 261 15 0 chr1 14694897 14694962 -227969391 + MIR SINE MIR 135 200 -62 792 186 4 4 chr1 14694962 14695740 -227968613 + (CA)n Simple_repeat Simple_repeat 1 778 0 672 209 0 0 chr1 14695771 14695948 -227968405 + (CA)n Simple_repeat Simple_repeat 2 178 0 289 276 41 0 chr1 14696028 14696126 -227968227 + MIR SINE MIR 45 146 -62 1810 147 57 0 chr1 14696146 14696425 -227967928 - AluJb SINE Alu -17 295 1 328 339 52 6 chr1 14696957 14697131 -227967222 - MIR SINE MIR -23 239 58 425 302 0 62 chr1 14697580 14697772 -227966581 - MIR SINE MIR -34 228 49 741 271 13 38 chr1 14697843 14698079 -227966274 - MIR SINE MIR -3 259 30 234 137 59 20 chr1 14698419 14698470 -227965883 + MIR SINE MIR 18 70 -138 1850 175 3 7 chr1 14699222 14699530 -227964823 - AluJo SINE Alu -5 307 1 297 322 56 39 chr1 14699538 14699718 -227964635 - MER5A DNA MER1_type -1 188 6 247 292 0 0 chr1 14699790 14699855 -227964498 + MIR3 SINE MIR 111 175 -33 2512 233 6 28 chr1 14699920 14700603 -227963750 + L1M4 LINE L1 3218 3885 -2261 354 331 44 0 chr1 14700603 14700739 -227963614 + MIR SINE MIR 59 200 -62 293 201 8 29 chr1 14701123 14701217 -227963136 + MIR SINE MIR 65 141 -67 2000 108 0 28 chr1 14702261 14702549 -227961804 - AluSg SINE Alu -30 280 1 195 291 76 13 chr1 14702707 14702786 -227961567 - MIR SINE MIR -105 103 20 195 316 60 45 chr1 14703112 14703245 -227961108 + L2 LINE L2 2925 3059 -213 24 0 0 0 chr1 14703297 14703321 -227961032 + AT_rich Low_complexity Low_complexity 1 24 0 383 207 29 0 chr1 14703541 14703681 -227960672 + (TGGA)n Simple_repeat Simple_repeat 3 146 0 528 187 7 13 chr1 14704212 14704367 -227959986 + GA-rich Low_complexity Low_complexity 1 154 0 437 283 69 26 chr1 14705664 14705897 -227958456 + L2 LINE L2 2578 2820 -494 215 291 128 50 chr1 14706113 14706292 -227958061 + L2 LINE L2 3118 3310 -3 203 296 75 80 chr1 14706400 14706613 -227957740 + L2 LINE L2 2966 3177 -95 491 290 119 0 chr1 14707390 14707566 -227956787 + MIR SINE MIR 59 255 -7 191 281 70 78 chr1 14707654 14707700 -227956653 + MIR SINE MIR 83 128 -134 2153 127 3 0 chr1 14707700 14707991 -227956362 - AluSq SINE Alu -21 292 1 191 281 70 78 chr1 14707991 14708072 -227956281 + MIR SINE MIR 128 209 -53 191 223 58 16 chr1 14708093 14708170 -227956183 - MIR SINE MIR -66 142 82 182 257 50 69 chr1 14708342 14708443 -227955910 - MIR3 SINE MIR -6 202 104 1404 176 44 78 chr1 14708604 14708991 -227955362 + MLT1A2 LTR MaLR 1 374 0 1673 126 75 36 chr1 14711602 14711935 -227952418 + MER4A LTR ERV1 1 346 -318 261 183 48 7 chr1 14711948 14712033 -227952320 + MER4A LTR ERV1 157 357 -218 494 140 207 26 chr1 14712056 14712197 -227952156 + MER4C LTR ERV1 300 610 0 373 290 56 0 chr1 14712341 14712498 -227951855 - L1MC4a LINE L1 -309 5812 5690 1800 161 0 11 chr1 14712753 14713033 -227951320 + AluSx SINE Alu 1 277 -35 336 64 0 0 chr1 14713037 14713084 -227951269 + (CAAAA)n Simple_repeat Simple_repeat 1 47 0 2562 64 6 6 chr1 14713153 14713466 -227950887 + AluSp SINE Alu 1 313 0 248 190 116 33 chr1 14713601 14713722 -227950631 + L1ME4a LINE L1 5985 6115 -6 2128 117 19 19 chr1 14713884 14714192 -227950161 + AluY SINE Alu 1 308 -3 203 250 0 0 chr1 14714379 14714435 -227949918 + (TG)n Simple_repeat Simple_repeat 1 56 0 188 147 0 0 chr1 14714655 14714689 -227949664 + MIR SINE MIR 106 139 -123 281 226 0 0 chr1 14715372 14715425 -227948928 + MIR SINE MIR 117 169 -93 395 309 55 55 chr1 14715468 14715798 -227948555 + MER65A LTR ERV1 1 330 -115 204 167 0 0 chr1 14716514 14716562 -227947791 + (TG)n Simple_repeat Simple_repeat 1 48 0 903 152 58 18 chr1 14717238 14717409 -227946944 + MER58A DNA MER1_type 2 179 -45 625 360 5 6 chr1 14717489 14717706 -227946647 + MIR SINE MIR 32 247 -15 1391 171 43 37 chr1 14717756 14717841 -227946512 + MER33 DNA MER1_type 1 84 -2501 2015 105 34 7 chr1 14717841 14718135 -227946218 + AluSx SINE Alu 1 302 -10 1391 171 43 37 chr1 14718135 14718371 -227945982 + MER33 DNA MER1_type 84 324 0 1007 204 22 0 chr1 14718485 14718666 -227945687 + MER5A DNA MER1_type 3 187 -2 22 0 0 0 chr1 14718760 14718782 -227945571 + AT_rich Low_complexity Low_complexity 1 22 0 361 295 77 60 chr1 14718906 14719257 -227945096 - L1MEd LINE L1 -4444 1938 1502 2294 66 3 0 chr1 14719257 14719546 -227944807 + AluSq SINE Alu 1 290 -23 361 295 77 60 chr1 14719546 14719789 -227944564 - L1MEd LINE L1 -4880 1502 1265 703 170 4 145 chr1 14719789 14719906 -227944447 + MER3 DNA MER1_type 2 71 -138 2123 115 0 0 chr1 14719906 14720201 -227944152 + AluSx SINE Alu 7 301 -11 703 170 4 145 chr1 14720201 14720318 -227944035 + MER3 DNA MER1_type 71 203 -6 622 231 128 88 chr1 14720322 14720790 -227943563 - L1MEd LINE L1 -5037 1335 849 357 242 60 103 chr1 14720910 14721162 -227943191 - L1MEd LINE L1 -5863 509 269 212 241 0 0 chr1 14721813 14721871 -227942482 + (CAGAGA)n Simple_repeat Simple_repeat 1 58 0 196 311 33 0 chr1 14722531 14722592 -227941761 + MER5A DNA MER1_type 9 71 -118 1747 119 12 0 chr1 14722592 14722844 -227941509 + AluSx SINE Alu 55 309 -3 21 71 0 0 chr1 14723011 14723053 -227941300 + AT_rich Low_complexity Low_complexity 1 42 0 284 323 113 57 chr1 14723449 14723936 -227940417 + L2 LINE L2 2542 3067 -205 237 33 0 0 chr1 14723936 14723966 -227940387 + (CA)n Simple_repeat Simple_repeat 2 31 0 284 323 113 57 chr1 14723966 14724137 -227940216 + L2 LINE L2 3067 3227 -45 601 202 120 66 chr1 14724142 14724325 -227940028 + MER63A DNA MER1_type 18 210 0 198 118 0 0 chr1 14724364 14724398 -227939955 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 560 186 53 0 chr1 14724527 14724640 -227939713 - MER20 DNA MER1_type 0 219 101 185 333 0 43 chr1 14727075 14727104 -227937249 + MIR SINE MIR 46 75 -133 2018 121 35 0 chr1 14727104 14727394 -227936959 - AluSx SINE Alu -11 301 2 185 333 0 43 chr1 14727394 14727457 -227936896 + MIR SINE MIR 75 134 -74 273 325 0 0 chr1 14727507 14727590 -227936763 + L2 LINE L2 3190 3272 0 220 211 58 0 chr1 14727593 14727645 -227936708 + L2 LINE L2 3201 3255 -17 472 301 137 0 chr1 14728364 14728583 -227935770 + MER102a DNA MER1_type 77 325 -5 229 238 0 32 chr1 14728839 14728902 -227935451 - MIR SINE MIR -118 144 84 356 306 175 1 chr1 14729008 14729172 -227935181 - MIR SINE MIR -62 146 7 489 250 38 25 chr1 14730076 14730236 -227934117 + MER103 DNA DNA 2 163 -3 336 275 154 7 chr1 14730277 14730426 -227933927 + MIR3 SINE MIR 23 193 -15 343 280 30 0 chr1 14730463 14730563 -227933790 + MIR SINE MIR 90 192 -70 586 318 30 0 chr1 14730620 14730821 -227933532 - MIR SINE MIR -40 222 16 216 330 44 22 chr1 14731399 14731490 -227932863 - MIR SINE MIR -67 141 49 253 321 0 28 chr1 14731779 14731885 -227932468 + MIR SINE MIR 22 124 -138 264 320 33 40 chr1 14732186 14732312 -227932041 - MER5A DNA MER1_type -43 146 1 961 266 34 0 chr1 14732724 14732961 -227931392 + MIR SINE MIR 6 250 -12 362 285 62 21 chr1 14733327 14733471 -227930882 - MIR SINE MIR -68 194 45 2190 121 0 9 chr1 14733973 14734288 -227930065 + AluSx SINE Alu 1 312 0 21 36 0 0 chr1 14734660 14734688 -227929665 + AT_rich Low_complexity Low_complexity 1 28 0 1092 110 0 0 chr1 14734688 14734842 -227929511 - AluJb SINE Alu -31 281 128 614 299 185 0 chr1 14735398 14735609 -227928744 + MIR SINE MIR 13 262 0 426 287 70 0 chr1 14735672 14735801 -227928552 - MER91C DNA MER1_type -2 138 1 922 88 0 22 chr1 14735872 14736008 -227928345 - AluY SINE Alu -4 307 175 469 251 30 18 chr1 14736199 14736366 -227927987 + MER117 DNA MER1_type 3 171 -26 228 239 30 15 chr1 14736401 14736468 -227927885 + MER5B DNA MER1_type 1 68 -110 27 62 0 0 chr1 14737377 14737425 -227926928 + AT_rich Low_complexity Low_complexity 1 48 0 202 88 0 88 chr1 14739367 14739424 -227924929 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 311 263 0 30 chr1 14739601 14739700 -227924653 + (CACG)n Simple_repeat Simple_repeat 4 99 0 2221 101 13 0 chr1 14740200 14740508 -227923845 + AluSx SINE Alu 1 312 0 297 260 21 21 chr1 14741151 14741247 -227923106 + MER5A DNA MER1_type 71 166 -23 1970 147 0 22 chr1 14743709 14744028 -227920325 + AluSq SINE Alu 2 313 0 443 325 141 50 chr1 14744145 14744422 -227919931 - L1M4 LINE L1 -1712 4434 4133 328 286 0 0 chr1 14745414 14745491 -227918862 - MIR3 SINE MIR -37 171 95 314 304 183 16 chr1 14745813 14746004 -227918349 + L2 LINE L2 2431 2653 -661 893 134 0 15 chr1 14746291 14746425 -227917928 + FLAM_C SINE Alu 1 132 -1 462 275 35 55 chr1 14746439 14746483 -227917870 + L2 LINE L2 3113 3156 -157 2021 131 0 10 chr1 14746483 14746789 -227917564 - AluSg SINE Alu -7 303 1 462 275 35 55 chr1 14746789 14746944 -227917409 + L2 LINE L2 3156 3308 -5 236 353 66 0 chr1 14747038 14747160 -227917193 - L2 LINE L2 -2 3311 3182 334 260 91 58 chr1 14747163 14747317 -227917036 + MIR SINE MIR 14 172 -90 250 305 48 29 chr1 14747780 14747885 -227916468 + MIR3 SINE MIR 81 187 -21 186 189 0 0 chr1 14748046 14748083 -227916270 + (ATG)n Simple_repeat Simple_repeat 3 39 0 369 227 85 156 chr1 14748084 14748363 -227915990 - MIR SINE MIR 0 262 7 789 259 43 47 chr1 14748818 14749119 -227915234 + MLT1K LTR MaLR 211 510 -78 447 267 14 27 chr1 14749600 14749746 -227914607 - MIR SINE MIR -88 174 31 341 319 35 9 chr1 14749813 14749929 -227914424 - MIR SINE MIR -107 155 37 2198 92 20 0 chr1 14750039 14750333 -227914020 - AluSx SINE Alu -12 300 1 1975 117 0 7 chr1 14750846 14751128 -227913225 - AluSx SINE Alu 0 312 33 615 271 8 0 chr1 14751474 14751607 -227912746 + MIR3 SINE MIR 72 205 -3 211 299 15 15 chr1 14751791 14751858 -227912495 - MIR SINE MIR -112 150 84 192 333 35 23 chr1 14751972 14752059 -227912294 + L2 LINE L2 3184 3271 -1 422 187 11 0 chr1 14752895 14752986 -227911367 + (CA)n Simple_repeat Simple_repeat 1 92 0 2857 90 0 6 chr1 14752997 14753362 -227910991 + THE1B LTR MaLR 1 363 -1 261 83 0 0 chr1 14753362 14753398 -227910955 + (CA)n Simple_repeat Simple_repeat 1 36 0 356 273 8 25 chr1 14753602 14753723 -227910630 + MIR SINE MIR 37 155 -107 453 252 26 33 chr1 14753790 14753941 -227910412 + MIR SINE MIR 31 180 -82 346 269 37 19 chr1 14755068 14755176 -227909177 - MIR SINE MIR -67 141 32 717 135 10 73 chr1 14755312 14755504 -227908849 + (CTACT)n Simple_repeat Simple_repeat 1 180 0 1959 98 22 4 chr1 14755511 14755786 -227908567 - AluSx SINE Alu -32 280 1 412 256 0 80 chr1 14755786 14755916 -227908437 - MIR SINE MIR -110 152 32 747 187 56 45 chr1 14755963 14756161 -227908192 + MER20 DNA MER1_type 3 202 -17 539 211 9 0 chr1 14756501 14756610 -227907743 + L1MB7 LINE L1 6006 6115 -69 255 61 0 0 chr1 14757082 14757115 -227907238 + (CA)n Simple_repeat Simple_repeat 2 34 0 1896 153 0 0 chr1 14757744 14758039 -227906314 - AluSx SINE Alu -17 295 1 2067 158 50 60 chr1 14758994 14759198 -227905155 + Tigger2a DNA MER2_type 1 205 -2503 2179 118 0 6 chr1 14759198 14759512 -227904841 - AluSx SINE Alu 0 312 1 2067 158 50 60 chr1 14759512 14759565 -227904788 + Tigger2a DNA MER2_type 205 257 -2451 1874 153 49 25 chr1 14759565 14759931 -227904422 + THE1C LTR MaLR 1 375 0 2067 158 50 60 chr1 14759931 14760109 -227904244 + Tigger2a DNA MER2_type 257 433 -1 390 301 9 0 chr1 14760118 14760231 -227904122 - MIR SINE MIR -112 150 37 193 293 104 0 chr1 14760405 14760511 -227903842 - MIR3 SINE MIR -83 125 9 279 312 65 12 chr1 14760588 14760758 -227903595 - L1ME4a LINE L1 0 6121 5943 1521 152 83 7 chr1 14760771 14761061 -227903292 - AluJb SINE Alu 0 312 1 2031 51 4 4 chr1 14761642 14761896 -227902457 + AluY SINE Alu 58 311 0 237 282 13 13 chr1 14761910 14761988 -227902365 + MIR SINE MIR 6 83 -179 320 338 44 19 chr1 14762071 14762231 -227902122 + MIR SINE MIR 89 252 -10 336 284 142 26 chr1 14762834 14763024 -227901329 + MIR SINE MIR 29 240 -22 320 283 19 0 chr1 14763027 14763133 -227901220 + L2 LINE L2 2999 3106 -207 197 149 106 21 chr1 14763188 14763235 -227901118 - L2 LINE L2 -79 3234 3184 581 218 75 0 chr1 14763535 14763682 -227900671 - MIR SINE MIR -40 222 65 2375 93 3 0 chr1 14763891 14764203 -227900150 + AluSp SINE Alu 1 313 0 2151 108 0 34 chr1 14764266 14764589 -227899764 + AluSx SINE Alu 1 312 0 2021 136 0 10 chr1 14764730 14765038 -227899315 - AluSx SINE Alu -1 311 7 392 317 31 50 chr1 14765341 14765502 -227898851 + MIR3 SINE MIR 45 202 -6 518 137 51 51 chr1 14765828 14765945 -227898408 + L1MA5A LINE L1 6181 6297 0 557 288 82 23 chr1 14766184 14766357 -227897996 + MIR SINE MIR 28 256 -3 184 256 23 0 chr1 14766357 14766400 -227897953 + L2 LINE L2 3258 3301 -12 184 208 21 62 chr1 14766683 14766731 -227897622 + L2 LINE L2 3216 3261 -11 182 194 28 0 chr1 14767072 14767108 -227897245 + L2 LINE L2 3265 3301 -12 1988 142 0 6 chr1 14767247 14767558 -227896795 - AluJb SINE Alu -3 309 1 201 74 0 0 chr1 14767916 14767943 -227896410 + (TAA)n Simple_repeat Simple_repeat 2 28 0 267 319 58 0 chr1 14768013 14768151 -227896202 - MIR SINE MIR -93 169 24 506 298 78 19 chr1 14768510 14768715 -227895638 + MIR SINE MIR 9 225 -37 356 166 61 0 chr1 14769127 14769290 -227895063 + (CAGGG)n Simple_repeat Simple_repeat 1 173 0 1541 141 36 0 chr1 14769714 14769962 -227894391 - AluSx SINE Alu -55 257 1 309 287 38 70 chr1 14770057 14770214 -227894139 + L2 LINE L2 2986 3137 -135 533 239 122 42 chr1 14770228 14770452 -227893901 - MIR SINE MIR -15 247 13 186 315 21 63 chr1 14770874 14771017 -227893336 - MIR3 SINE MIR -71 137 1 2522 207 36 15 chr1 14771255 14771488 -227892865 + L1MB8 LINE L1 5091 5317 -861 2006 118 0 4 chr1 14771488 14771768 -227892585 + AluSx SINE Alu 1 279 -33 189 0 0 0 chr1 14771769 14771790 -227892563 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2522 207 36 15 chr1 14771790 14772278 -227892075 + L1MB8 LINE L1 5316 5827 -351 1824 160 23 26 chr1 14772281 14772555 -227891798 + MER2 DNA MER2_type 3 277 -68 2217 111 0 0 chr1 14772555 14772861 -227891492 - AluSx SINE Alu -6 306 1 1824 160 23 26 chr1 14772861 14772929 -227891424 + MER2 DNA MER2_type 277 344 -1 1783 150 16 57 chr1 14772929 14773036 -227891317 + L1MB8 LINE L1 5827 5937 -241 2486 71 0 0 chr1 14773036 14773347 -227891006 + AluY SINE Alu 1 311 0 1783 150 16 57 chr1 14773347 14773606 -227890747 + L1MB8 LINE L1 5937 6178 0 1492 199 10 23 chr1 14773620 14773926 -227890427 + AluJb SINE Alu 1 302 -10 423 0 0 0 chr1 14773927 14773974 -227890379 + (CACAA)n Simple_repeat Simple_repeat 3 49 0 2045 115 23 0 chr1 14774967 14775272 -227889081 + AluSx SINE Alu 1 312 0 211 228 44 20 chr1 14775408 14775502 -227888851 - MIR SINE MIR -99 163 37 326 257 97 26 chr1 14776173 14776286 -227888067 - L2 LINE L2 -14 3299 3179 324 296 53 23 chr1 14776319 14776451 -227887902 + MLT1J LTR MaLR 42 177 -334 207 0 0 0 chr1 14777679 14777702 -227886651 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 315 267 86 0 chr1 14777989 14778094 -227886259 - MIR3 SINE MIR -21 187 74 191 304 98 20 chr1 14778107 14778148 -227886205 + MIR SINE MIR 30 66 -196 2493 42 3 0 chr1 14778148 14778457 -227885896 + AluY SINE Alu 1 310 -1 191 304 98 20 chr1 14778457 14778517 -227885836 + MIR SINE MIR 66 139 -123 1793 163 21 15 chr1 14778539 14778871 -227885482 + MER2 DNA MER2_type 9 342 -3 222 277 96 12 chr1 14779012 14779095 -227885258 + MIR3 SINE MIR 105 194 -14 672 71 0 0 chr1 14779601 14779685 -227884668 - AluS SINE Alu -226 86 3 264 283 22 11 chr1 14779726 14779818 -227884535 - MIR SINE MIR -96 112 20 242 197 106 0 chr1 14779966 14780032 -227884321 + MER117 DNA MER1_type 97 169 -28 569 241 0 49 chr1 14780315 14780477 -227883876 + L2 LINE L2 3158 3311 -2 1599 278 195 28 chr1 14780985 14782183 -227882170 + L2 LINE L2 1641 3061 -252 339 246 186 0 chr1 14782993 14783111 -227881242 + MIR SINE MIR 15 154 -108 1702 115 163 19 chr1 14783395 14783708 -227880645 + THE1B LTR MaLR 7 364 0 329 232 58 103 chr1 14784580 14784743 -227879610 + MIR SINE MIR 6 161 -64 1312 301 46 21 chr1 14784743 14785264 -227879089 + L1ME3A LINE L1 5637 6170 0 734 258 83 22 chr1 14785706 14785839 -227878514 - MIR SINE MIR -5 257 103 2108 125 0 6 chr1 14785839 14786152 -227878201 + AluSx SINE Alu 1 311 -1 734 258 83 22 chr1 14786152 14786247 -227878106 - MIR SINE MIR -159 103 15 270 344 17 14 chr1 14786477 14786619 -227877734 + MIR SINE MIR 30 170 -63 2310 78 0 0 chr1 14787712 14788006 -227876347 - AluSq SINE Alu -19 294 1 348 303 138 44 chr1 14788146 14788219 -227876134 - L2 LINE L2 -17 3296 3231 2093 119 0 0 chr1 14788219 14788512 -227875841 - AluSx SINE Alu -19 293 1 348 303 138 44 chr1 14788512 14788821 -227875532 - L2 LINE L2 -82 3231 2878 384 245 36 54 chr1 14788872 14788942 -227875411 - MLT1C LTR MaLR 0 467 419 2121 118 0 0 chr1 14788942 14789238 -227875115 + AluSq SINE Alu 1 296 -17 384 245 36 54 chr1 14789238 14789312 -227875041 - MLT1C LTR MaLR -48 419 345 211 125 0 62 chr1 14789386 14789434 -227874919 + (TTCTC)n Simple_repeat Simple_repeat 3 47 0 282 264 58 0 chr1 14789448 14789535 -227874818 - MLT1D LTR MaLR -366 139 48 227 323 53 30 chr1 14789611 14789744 -227874609 - L2 LINE L2 -618 2696 2561 2209 87 0 0 chr1 14790077 14790404 -227873949 + AluSc SINE Alu 1 309 0 464 266 65 12 chr1 14790445 14790614 -227873739 - MIR SINE MIR -18 244 67 237 273 173 0 chr1 14791202 14791312 -227873041 - MIR SINE MIR -63 145 17 781 269 16 97 chr1 14791603 14791753 -227872600 + L2 LINE L2 2924 3084 -229 2026 122 7 7 chr1 14791753 14792056 -227872297 - AluSx SINE Alu -9 303 1 781 269 16 97 chr1 14792056 14792328 -227872025 + L2 LINE L2 3084 3312 -1 1977 135 7 0 chr1 14792592 14792888 -227871465 - AluSx SINE Alu -14 298 1 219 321 115 52 chr1 14792993 14793245 -227871108 + L3b LINE CR1 1191 1458 -125 496 224 29 92 chr1 14793265 14793439 -227870914 + MIR SINE MIR 8 170 -92 218 361 41 8 chr1 14794273 14794395 -227869958 + MIR SINE MIR 49 174 -88 2352 217 73 59 chr1 14794576 14794838 -227869515 + L1MC5 LINE L1 6983 7240 -721 2314 59 7 7 chr1 14794838 14795141 -227869212 + AluY SINE Alu 1 303 -8 2352 217 73 59 chr1 14795141 14795809 -227868544 + L1MC5 LINE L1 7240 7926 -35 356 261 100 1 chr1 14797045 14797184 -227867169 - MIR SINE MIR -55 153 40 2576 45 0 3 chr1 14798444 14798753 -227865600 - AluY SINE Alu -3 308 1 643 212 244 5 chr1 14798753 14798970 -227865383 + L2 LINE L2 3045 3313 0 1775 159 3 20 chr1 14799723 14800024 -227864329 - AluSx SINE Alu -16 296 1 189 0 0 0 chr1 14800051 14800072 -227864281 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 483 234 57 35 chr1 14800638 14800779 -227863574 - MIR SINE MIR -69 193 50 670 290 16 5 chr1 14800930 14801123 -227863230 - MIR SINE MIR -29 233 39 402 252 114 0 chr1 14801222 14801353 -227863000 - MER104 DNA Tc2 -34 146 1 533 253 7 27 chr1 14802006 14802156 -227862197 - L1MA10 LINE L1 -2 6332 6186 360 280 59 81 chr1 14802383 14802493 -227861860 + MIR SINE MIR 47 158 -104 261 0 0 0 chr1 14802493 14802522 -227861831 + (TG)n Simple_repeat Simple_repeat 2 30 0 2177 117 0 0 chr1 14802525 14802834 -227861519 - AluSx SINE Alu -3 309 1 360 280 59 81 chr1 14802834 14802905 -227861448 + MIR SINE MIR 160 228 -34 526 299 7 0 chr1 14802939 14803076 -227861277 - MIR SINE MIR -122 140 3 2589 45 0 0 chr1 14803348 14803659 -227860694 + AluY SINE Alu 1 311 0 252 328 148 0 chr1 14803903 14804025 -227860328 - MIR SINE MIR -12 250 111 1823 123 30 43 chr1 14804046 14804346 -227860007 - AluSx SINE Alu -14 298 3 1902 154 3 0 chr1 14804408 14804706 -227859647 - AluJo SINE Alu -13 299 1 187 336 133 8 chr1 14804828 14804956 -227859397 - MIR SINE MIR -17 245 102 2500 173 34 39 chr1 14805080 14805588 -227858765 - MLT1D LTR MaLR 0 505 1 334 306 78 6 chr1 14806141 14806311 -227858042 - MIR3 SINE MIR -75 133 7 988 177 0 0 chr1 14806338 14806502 -227857851 - AluJo SINE Alu -26 286 123 539 241 95 78 chr1 14806558 14806678 -227857675 + MIR SINE MIR 9 125 -137 2217 101 0 3 chr1 14806678 14806986 -227857367 + AluSx SINE Alu 1 307 -5 539 241 95 78 chr1 14806986 14807097 -227857256 + MIR SINE MIR 125 244 -18 434 191 24 0 chr1 14807609 14807693 -227856660 - MIR SINE MIR -119 143 58 421 289 104 55 chr1 14807866 14807988 -227856365 - L2 LINE L2 -19 3294 3180 2227 96 3 0 chr1 14807988 14808345 -227856008 + AluSp SINE Alu 1 313 0 421 289 104 55 chr1 14808345 14808662 -227855691 - L2 LINE L2 -133 3180 2833 305 320 50 50 chr1 14809044 14809225 -227855128 - L2 LINE L2 -17 3255 3075 401 326 48 0 chr1 14809537 14809684 -227854669 - Charlie8 DNA MER1_type -2227 190 37 1853 89 0 4 chr1 14809885 14810133 -227854220 - AluSx SINE Alu -11 301 55 382 347 28 0 chr1 14810682 14810826 -227853527 - MIR SINE MIR -71 191 44 2169 92 0 3 chr1 14812044 14812339 -227852014 - AluSp SINE Alu -16 297 4 1018 176 66 35 chr1 14812804 14813031 -227851322 - MER106A DNA MER1_type 0 236 3 1010 208 29 41 chr1 14813070 14813315 -227851038 - MIR SINE MIR -18 244 3 348 262 223 19 chr1 14813641 14813847 -227850506 - L1ME LINE L1 -315 5806 5559 212 281 49 24 chr1 14814418 14814500 -227849853 + (CATG)n Simple_repeat Simple_repeat 1 84 0 327 277 0 12 chr1 14814777 14814860 -227849493 + L2 LINE L2 3231 3312 -1 1906 108 0 42 chr1 14815459 14815747 -227848606 - AluSc SINE Alu -19 290 15 207 147 0 0 chr1 14815751 14815785 -227848568 - L2 LINE L2 -14 3258 3225 615 71 0 115 chr1 14817288 14817355 -227846998 + L1PB2 LINE L1 5772 5824 -327 2173 105 0 16 chr1 14817355 14817668 -227846685 + AluSx SINE Alu 1 308 -4 615 71 0 115 chr1 14817668 14817720 -227846633 + L1PB2 LINE L1 5824 5880 -271 271 299 234 19 chr1 14817912 14818237 -227846116 + L1MC/D LINE L1 5255 5649 -2159 999 145 16 21 chr1 14818395 14818588 -227845765 + L1M1 LINE L1 5508 5699 -603 520 174 0 0 chr1 14818591 14818677 -227845676 + MER66A LTR ERV1 154 239 -239 332 174 122 71 chr1 14818753 14818781 -227845572 - L1ME4a LINE L1 -4 6117 6092 1795 201 116 37 chr1 14818781 14819263 -227845090 - MLT2B1 LTR ERVL 0 520 1 332 174 122 71 chr1 14819263 14819332 -227845021 - L1ME4a LINE L1 -29 6092 6015 1548 186 65 90 chr1 14819885 14820426 -227843927 + MER66A LTR ERV1 95 473 -5 298 312 18 9 chr1 14820437 14820546 -227843807 + MIR SINE MIR 153 262 0 525 300 121 5 chr1 14821889 14822112 -227842241 - MIR SINE MIR 0 262 14 1578 220 122 28 chr1 14823070 14823529 -227840824 + MLT1D LTR MaLR 4 505 0 272 173 39 0 chr1 14823962 14824014 -227840339 + GA-rich Low_complexity Low_complexity 2 55 0 663 118 13 39 chr1 14824024 14824177 -227840176 + (GGGAA)n Simple_repeat Simple_repeat 4 152 0 300 224 0 0 chr1 14824436 14824523 -227839830 + AluSq/x SINE Alu 66 135 -168 240 62 0 62 chr1 14824523 14824571 -227839782 - L1MB4 LINE L1 -9 6171 6127 2077 127 10 0 chr1 14824571 14824878 -227839475 + AluSx SINE Alu 1 310 -2 1748 194 120 46 chr1 14826038 14826139 -227838214 - MLT1C LTR MaLR -2 465 373 2099 92 10 7 chr1 14826139 14826444 -227837909 - AluSx SINE Alu -6 306 1 1748 194 120 46 chr1 14826444 14826775 -227837578 - MLT1C LTR MaLR -94 373 1 857 182 62 84 chr1 14826823 14826991 -227837362 - MER58A DNA MER1_type -2199 221 56 1816 145 0 3 chr1 14826991 14827306 -227837047 + AluJb SINE Alu 1 314 0 857 182 62 84 chr1 14827306 14827360 -227836993 - MER58A DNA MER1_type -2364 56 2 408 261 72 0 chr1 14827425 14827536 -227836817 + MIR SINE MIR 74 192 -70 586 326 77 0 chr1 14827739 14827935 -227836418 - MIR SINE MIR -4 258 48 2117 113 3 3 chr1 14828019 14828321 -227836032 - AluSx SINE Alu -10 302 1 491 278 178 35 chr1 14829611 14830006 -227834347 + L2 LINE L2 2576 2913 -400 2282 81 0 3 chr1 14830006 14830302 -227834051 - AluSg SINE Alu -15 295 1 491 278 178 35 chr1 14830302 14830558 -227833795 + L2 LINE L2 2913 3307 -6 284 290 8 105 chr1 14831287 14831482 -227832871 - L1MC4 LINE L1 -277 7765 7597 2284 100 0 3 chr1 14831482 14831792 -227832561 - AluSg SINE Alu 0 310 2 284 290 8 105 chr1 14831792 14831844 -227832509 - L1MC4 LINE L1 -445 7597 7542 304 183 127 0 chr1 14831866 14831937 -227832416 - L1MC4a LINE L1 -451 7357 7300 1508 167 7 7 chr1 14831958 14832228 -227832125 - AluJo SINE Alu -3 309 40 354 139 17 46 chr1 14832229 14832309 -227832044 - AluJ/FLAM SINE Alu -243 59 1 2197 80 0 0 chr1 14832363 14832639 -227831714 - AluSg SINE Alu -14 296 21 1159 271 94 38 chr1 14832656 14833118 -227831235 - L1MC4a LINE L1 -867 6941 6439 1729 125 35 64 chr1 14833118 14833430 -227830923 - AluSx SINE Alu -9 303 1 1159 271 94 38 chr1 14833430 14833540 -227830813 - L1MC4a LINE L1 -1369 6439 6337 206 32 32 0 chr1 14833540 14833571 -227830782 + (TTTAA)n Simple_repeat Simple_repeat 3 34 0 2152 102 0 0 chr1 14833571 14833855 -227830498 - AluSq SINE Alu -29 284 1 889 261 131 4 chr1 14833879 14834156 -227830197 - L1MC4a LINE L1 -698 5472 5406 2096 121 10 0 chr1 14834790 14835097 -227829256 + AluSg SINE Alu 1 310 0 547 318 19 5 chr1 14835256 14835467 -227828886 + MIR SINE MIR 5 218 -44 594 322 16 11 chr1 14835768 14835951 -227828402 + MER91A DNA MER1_type 1 184 -12 267 299 45 0 chr1 14836057 14836124 -227828229 + MER91A DNA MER1_type 127 196 0 413 275 203 6 chr1 14837315 14837326 -227827027 - MIR SINE MIR -19 243 235 2146 124 0 9 chr1 14837326 14837641 -227826712 + AluSx SINE Alu 1 312 0 413 275 203 6 chr1 14837641 14837811 -227826542 - MIR SINE MIR -27 235 26 1293 125 0 0 chr1 14838080 14838272 -227826081 - AluSg/x SINE Alu -4 308 117 501 75 15 0 chr1 14838372 14838439 -227825914 - AluSg1 SINE Alu -217 92 25 1745 98 4 0 chr1 14838441 14838676 -227825677 + AluSx SINE Alu 53 288 -24 1291 80 6 0 chr1 14839534 14839710 -227824643 + AluSp SINE Alu 135 311 -2 207 0 0 0 chr1 14840507 14840530 -227823823 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2140 80 0 11 chr1 14840534 14840820 -227823533 - AluSg SINE Alu -27 283 1 829 189 0 7 chr1 14841282 14841435 -227822918 + AluJb SINE Alu 160 311 -1 2418 70 0 3 chr1 14841530 14841842 -227822511 - AluY SINE Alu 0 311 1 270 219 145 0 chr1 14841876 14841945 -227822408 + MIR SINE MIR 106 183 -63 35 71 0 0 chr1 14841994 14842064 -227822289 + AT_rich Low_complexity Low_complexity 1 70 0 505 256 8 0 chr1 14842635 14842653 -227821700 - L1MA10 LINE L1 -7 6327 6310 1375 254 88 8 chr1 14842653 14842838 -227821515 - L1ME2 LINE L1 -18 6146 5962 344 322 102 23 chr1 14842838 14843180 -227821173 - L1PB4 LINE L1 -213 5943 5575 1650 226 88 11 chr1 14843252 14843744 -227820609 + MLT1H1 LTR MaLR 3 551 -4 455 276 0 31 chr1 14843753 14843797 -227820556 + L2 LINE L2 3191 3235 -78 3975 57 36 0 chr1 14843797 14844292 -227820061 + LTR10D LTR ERV1 1 513 0 455 276 0 31 chr1 14844292 14844374 -227819979 + L2 LINE L2 3235 3313 0 313 329 36 7 chr1 14844506 14844646 -227819707 + MIR SINE MIR 110 253 -9 2215 101 3 0 chr1 14844777 14845075 -227819278 + AluSq SINE Alu 1 299 -14 920 58 0 0 chr1 14845802 14845922 -227818431 + AluY SINE Alu 192 311 0 225 245 19 0 chr1 14845983 14846036 -227818317 + CT-rich Low_complexity Low_complexity 5 58 0 353 346 21 42 chr1 14846089 14846170 -227818183 + MIR SINE MIR 20 101 -161 2084 121 7 7 chr1 14846170 14846477 -227817876 - AluSg SINE Alu -3 307 1 353 346 21 42 chr1 14846477 14846635 -227817718 + MIR SINE MIR 101 254 -8 253 132 0 0 chr1 14847267 14847305 -227817048 + MLT1I LTR MaLR 98 135 -274 371 187 91 20 chr1 14847349 14847470 -227816883 + L1MC3 LINE L1 6255 6344 0 2108 104 0 0 chr1 14847479 14847759 -227816594 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr1 14847768 14847792 -227816561 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1610 173 65 127 chr1 14849078 14849130 -227815223 - MLT1D LTR MaLR -4 501 447 3898 81 7 37 chr1 14849130 14849671 -227814682 + MER1A DNA MER1_type 3 527 0 1610 173 65 127 chr1 14849671 14850145 -227814208 - MLT1D LTR MaLR -58 447 8 2021 112 10 7 chr1 14850624 14850919 -227813434 + AluSx SINE Alu 1 296 -16 1937 179 67 77 chr1 14850919 14851317 -227813036 + Charlie1 DNA MER1_type 2154 2545 -216 2128 116 7 0 chr1 14851317 14851620 -227812733 + AluSx SINE Alu 5 309 -3 1937 179 67 77 chr1 14851620 14851835 -227812518 + Charlie1 DNA MER1_type 2545 2761 0 715 189 0 57 chr1 14851919 14852094 -227812259 + L1ME4a LINE L1 5721 5885 -236 1710 155 45 7 chr1 14852273 14852564 -227811789 + AluJb SINE Alu 1 302 -10 232 200 256 11 chr1 14853245 14853335 -227811018 - MIR SINE MIR -27 235 124 4372 76 21 2 chr1 14853397 14853966 -227810387 + L1PA8 LINE L1 5591 6170 -2 269 203 76 38 chr1 14853991 14854070 -227810283 - MIR SINE MIR -168 94 13 399 243 144 35 chr1 14854167 14854340 -227810013 + MIR SINE MIR 57 248 -14 192 250 174 22 chr1 14854557 14854649 -227809704 - MIR SINE MIR -55 207 102 433 262 99 0 chr1 14855479 14855620 -227808733 + MLT1J LTR MaLR 8 162 -349 341 260 63 47 chr1 14855667 14855794 -227808559 + MLT1J2 LTR MaLR 320 448 -2 699 262 36 27 chr1 14857215 14857440 -227806913 - MIR SINE MIR -28 234 8 321 318 71 9 chr1 14858148 14858359 -227805994 + L2 LINE L2 2844 3067 -246 408 287 120 12 chr1 14858487 14858654 -227805699 + L2 LINE L2 3094 3278 -35 223 174 22 0 chr1 14858736 14858782 -227805571 + C-rich Low_complexity Low_complexity 3 49 0 222 290 103 0 chr1 14859828 14859973 -227804380 + L2 LINE L2 2888 3047 -266 250 284 11 57 chr1 14860114 14860202 -227804151 + L2 LINE L2 3182 3265 -7 2285 86 0 19 chr1 14860956 14861269 -227803084 - AluSq SINE Alu 0 313 7 211 302 35 35 chr1 14861375 14861461 -227802892 + MIR SINE MIR 41 126 -82 514 159 175 0 chr1 14861546 14861672 -227802681 + MER53 DNA DNA 32 179 -10 240 256 238 17 chr1 14862146 14862335 -227802018 + MIR3 SINE MIR 15 241 -21 238 325 0 0 chr1 14862409 14862492 -227801861 + MIR SINE MIR 39 121 -87 236 304 0 0 chr1 14862559 14862628 -227801725 + MER3 DNA MER1_type 20 88 -121 * 538 262 82 16 chr1 14862587 14862628 -227801725 - MER3 DNA MER1_type 0 209 172 2082 103 14 0 chr1 14862628 14862918 -227801435 - AluY SINE Alu -17 294 1 538 262 82 16 chr1 14862918 14863059 -227801294 - MER3 DNA MER1_type -37 172 15 453 292 56 31 chr1 14863635 14863830 -227800523 + MLT1J LTR MaLR 99 298 -213 25 31 0 0 chr1 14863920 14863952 -227800401 + AT_rich Low_complexity Low_complexity 1 32 0 894 288 29 16 chr1 14863968 14864211 -227800142 - MIR SINE MIR -10 252 7 190 333 56 0 chr1 14864437 14864527 -227799826 + L2 LINE L2 3155 3249 -23 313 306 160 7 chr1 14864551 14864695 -227799658 + MIR SINE MIR 32 197 -65 349 114 38 76 chr1 14865017 14865096 -227799257 + L1ME2 LINE L1 6089 6164 0 333 0 0 0 chr1 14865315 14865352 -227799001 + (CA)n Simple_repeat Simple_repeat 2 38 0 1939 137 3 13 chr1 14865820 14866098 -227798255 + AluSx SINE Alu 5 293 -19 217 97 0 0 chr1 14866098 14866129 -227798224 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1939 137 3 13 chr1 14866129 14866149 -227798204 + AluSx SINE Alu 293 312 0 270 269 154 46 chr1 14866470 14866600 -227797753 - MIR SINE MIR -10 252 109 1902 128 14 0 chr1 14868402 14868718 -227795635 - AluSx SINE Alu 0 320 1 656 250 93 39 chr1 14868942 14869437 -227794916 + MLT1K LTR MaLR 3 580 -8 659 267 119 14 chr1 14869788 14869998 -227794355 - MIR SINE MIR -18 244 13 1792 83 0 8 chr1 14871029 14871269 -227793084 + AluY SINE Alu 74 311 0 227 242 16 0 chr1 14871381 14871443 -227792910 + MIR SINE MIR 94 156 -106 * 505 329 99 0 chr1 14871435 14871657 -227792696 + MIR SINE MIR 11 254 -8 279 284 96 8 chr1 14872445 14872569 -227791784 - MIR SINE MIR -32 176 39 2378 75 0 7 chr1 14873496 14873803 -227790550 - AluSx SINE Alu -7 305 1 603 216 174 12 chr1 14873894 14874061 -227790292 + MIR SINE MIR 69 262 0 21 0 0 0 chr1 14874501 14874522 -227789831 + AT_rich Low_complexity Low_complexity 1 21 0 497 16 16 0 chr1 14874541 14874603 -227789750 + (CA)n Simple_repeat Simple_repeat 2 64 0 2163 89 3 25 chr1 14876377 14876693 -227787660 + AluSx SINE Alu 4 312 0 560 348 36 16 chr1 14877094 14877341 -227787012 + L3 LINE CR1 1210 1461 -116 1768 130 7 20 chr1 14878020 14878319 -227786034 + AluJo SINE Alu 1 295 -17 2085 129 3 0 chr1 14878321 14878631 -227785722 + AluSx SINE Alu 1 311 -1 353 218 39 13 chr1 14878732 14878810 -227785543 - MIR SINE MIR -93 169 90 2288 90 0 0 chr1 14879033 14879333 -227785020 - AluSq SINE Alu -13 300 1 488 212 131 7 chr1 14879357 14879494 -227784859 - MIR SINE MIR -75 187 34 216 286 255 0 chr1 14880857 14880955 -227783398 + L2 LINE L2 3185 3307 -6 543 254 0 0 chr1 14881094 14881204 -227783149 + MER81 DNA DNA 5 114 0 260 297 79 10 chr1 14881362 14881463 -227782890 - MIR SINE MIR -98 164 57 187 98 0 49 chr1 14881887 14881928 -227782425 + (GGGAGA)n Simple_repeat Simple_repeat 6 44 0 841 178 50 22 chr1 14881968 14882148 -227782205 - MER5A DNA MER1_type 0 189 5 717 129 0 0 chr1 14882236 14882362 -227781991 + AluSp/q SINE Alu 185 310 0 375 308 123 0 chr1 14882861 14882991 -227781362 - L3 LINE CR1 -90 1487 1342 2372 75 3 0 chr1 14883088 14883393 -227780960 + AluSg1 SINE Alu 1 306 -3 2424 51 0 25 chr1 14883438 14883752 -227780601 + AluY SINE Alu 1 306 -5 1059 195 0 0 chr1 14883786 14883960 -227780393 + FAM SINE Alu 1 174 -1 2093 120 0 3 chr1 14884200 14884501 -227779852 + AluSq SINE Alu 1 300 -13 1536 192 18 0 chr1 14884516 14884792 -227779561 + L1MB4 LINE L1 5900 6180 0 386 195 172 0 chr1 14885009 14885096 -227779257 - MER3 DNA MER1_type -8 201 100 331 238 0 25 chr1 14885755 14885835 -227778518 + FAM SINE Alu 73 150 -25 201 274 82 14 chr1 14885900 14885973 -227778380 + MER5A DNA MER1_type 1 78 -111 1852 142 0 39 chr1 14886127 14886438 -227777915 - AluSx SINE Alu -13 299 1 218 221 38 114 chr1 14886449 14886607 -227777746 + MIR3 SINE MIR 54 199 -9 240 318 139 8 chr1 14886939 14887068 -227777285 + MIR SINE MIR 105 250 -12 21 57 0 0 chr1 14888322 14888357 -227775996 + AT_rich Low_complexity Low_complexity 1 35 0 574 259 36 24 chr1 14888482 14888648 -227775705 - MIR SINE MIR -85 177 10 2488 46 3 0 chr1 14889120 14889424 -227774929 - AluY SINE Alu -6 305 1 454 290 22 0 chr1 14889482 14889620 -227774733 + MIR SINE MIR 43 183 -79 727 269 57 46 chr1 14890046 14890328 -227774025 + L2 LINE L2 3028 3312 -1 348 311 102 12 chr1 14891510 14891677 -227772676 - MIR SINE MIR -2 260 79 383 308 128 0 chr1 14891996 14892168 -227772185 + MIR SINE MIR 56 249 -13 21 0 0 0 chr1 14892948 14892969 -227771384 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr1 14892991 14893011 -227771342 + (CCCCG)n Simple_repeat Simple_repeat 2 21 0 477 260 0 0 chr1 14893174 14893449 -227770904 + G-rich Low_complexity Low_complexity 1 275 0 23 0 0 0 chr1 14893554 14893577 -227770776 + GC_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr1 14893742 14893781 -227770572 + GC_rich Low_complexity Low_complexity 1 39 0 194 0 39 0 chr1 14893926 14893952 -227770401 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 2101 74 0 0 chr1 14895185 14895454 -227768899 - AluSg SINE Alu -8 302 34 692 275 100 63 chr1 14895788 14895987 -227768366 - Charlie8 DNA MER1_type -1867 550 360 1961 151 0 0 chr1 14895987 14896299 -227768054 + AluSx SINE Alu 1 312 0 692 275 100 63 chr1 14896299 14896561 -227767792 - Charlie8 DNA MER1_type -2057 360 72 405 39 0 0 chr1 14896802 14896853 -227767500 + (TG)n Simple_repeat Simple_repeat 2 52 0 803 172 172 0 chr1 14897233 14897384 -227766969 + MER45A DNA AcHobo 1 177 -1 198 71 0 0 chr1 14897710 14897738 -227766615 + (A)n Simple_repeat Simple_repeat 1 28 0 1552 143 62 65 chr1 14897971 14898307 -227766046 - MER7A DNA MER2_type -1 345 13 2217 84 7 0 chr1 14898535 14898831 -227765522 + AluSx SINE Alu 5 302 -10 1381 233 64 77 chr1 14899007 14899258 -227765095 - MLT1F1 LTR MaLR -8 559 306 234 0 0 0 chr1 14899258 14899284 -227765069 + (TA)n Simple_repeat Simple_repeat 2 27 0 2192 113 0 0 chr1 14899284 14899586 -227764767 - AluSx SINE Alu -5 307 6 1381 233 64 77 chr1 14899586 14899800 -227764553 - MLT1F1 LTR MaLR -259 308 99 2319 97 0 3 chr1 14899808 14900118 -227764235 + AluSc SINE Alu 1 309 0 276 30 0 0 chr1 14900118 14900151 -227764202 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 315 222 42 0 chr1 14900153 14900253 -227764100 - MLT1F LTR MaLR -460 82 4 402 319 84 31 chr1 14900254 14900480 -227763873 + MIR SINE MIR 13 250 -12 1601 181 7 7 chr1 14901070 14901357 -227762996 - AluJo SINE Alu -17 295 9 2131 111 6 25 chr1 14901518 14901834 -227762519 + AluSx SINE Alu 1 310 -2 1171 179 36 20 chr1 14901859 14902110 -227762243 - MIR SINE MIR 0 262 8 272 298 224 12 chr1 14902127 14902288 -227762065 - MIR SINE MIR -12 250 56 2429 59 13 0 chr1 14902785 14903090 -227761263 - AluSp SINE Alu -4 309 1 729 225 0 94 chr1 14903092 14903305 -227761048 - MIR SINE MIR -64 198 6 750 201 38 11 chr1 14903748 14903932 -227760421 + MER5A DNA MER1_type 1 189 0 273 273 117 31 chr1 14905017 14905145 -227759208 - MIR SINE MIR -23 239 101 336 290 28 48 chr1 14905149 14905294 -227759059 + Charlie8 DNA MER1_type 7 148 -2269 1387 129 0 0 chr1 14905318 14905512 -227758841 + AluJb SINE Alu 1 194 -118 360 294 83 50 chr1 14905733 14905821 -227758532 + MIR3 SINE MIR 5 89 -119 2047 122 26 0 chr1 14905821 14906125 -227758228 - AluSx SINE Alu 0 312 1 360 294 83 50 chr1 14906125 14906216 -227758137 + MIR3 SINE MIR 89 190 -18 402 258 43 45 chr1 14906675 14906820 -227757533 - MIR3 SINE MIR -65 143 15 733 296 30 9 chr1 14907030 14907260 -227757093 + Charlie8 DNA MER1_type 2 236 -2181 797 130 198 57 chr1 14907401 14907593 -227756760 + MER20 DNA MER1_type 1 219 0 449 34 17 0 chr1 14907902 14907961 -227756392 + (TTCA)n Simple_repeat Simple_repeat 3 62 0 1572 143 21 38 chr1 14907961 14908248 -227756105 - AluSx SINE Alu -30 282 1 330 217 22 43 chr1 14908698 14908790 -227755563 + MIR SINE MIR 78 167 -95 * 376 242 91 95 chr1 14908775 14909006 -227755347 - MIR SINE MIR 0 262 33 1697 107 119 8 chr1 14909015 14909276 -227755077 - AluSg1 SINE Alu -17 292 3 1532 148 21 41 chr1 14909285 14909437 -227754916 - AluJo SINE Alu -22 290 145 2005 139 7 3 chr1 14909437 14909747 -227754606 - AluSx SINE Alu -1 311 1 1532 148 21 41 chr1 14909747 14909885 -227754468 - AluJo SINE Alu -167 145 6 194 316 63 47 chr1 14910221 14910411 -227753942 + L2 LINE L2 2891 3083 -189 307 221 221 0 chr1 14910488 14910583 -227753770 - MER5A DNA MER1_type -7 182 61 2071 119 0 19 chr1 14910583 14910893 -227753460 - AluJb SINE Alu -8 304 1 282 197 30 0 chr1 14910928 14910994 -227753359 - MER5A DNA MER1_type -117 72 5 324 0 0 0 chr1 14911787 14911823 -227752530 + (TTA)n Simple_repeat Simple_repeat 3 38 0 2104 105 0 0 chr1 14911826 14912111 -227752242 - AluSc SINE Alu -24 285 1 2036 92 7 0 chr1 14912118 14912428 -227751925 - AluY SINE Alu 0 312 1 1768 133 10 30 chr1 14912632 14912934 -227751419 + AluSx SINE Alu 3 298 -14 2311 97 0 0 chr1 14912934 14913245 -227751108 + AluY SINE Alu 1 311 0 250 211 35 18 chr1 14913567 14913624 -227750729 - L2 LINE L2 -7 3306 3249 792 103 8 0 chr1 14913665 14913782 -227750571 - AluSg/x SINE Alu -3 307 190 279 310 9 35 chr1 14913786 14913902 -227750451 - MIR SINE MIR -118 144 32 435 281 100 6 chr1 14914040 14914200 -227750153 + MIR SINE MIR 77 251 -11 2224 114 0 3 chr1 14914828 14915136 -227749217 + AluSq SINE Alu 1 307 -6 2554 53 0 10 chr1 14915470 14915770 -227748583 + AluY SINE Alu 1 297 -14 1116 300 98 18 chr1 14916304 14917046 -227747307 + L2 LINE L2 2495 3313 0 2491 70 0 3 chr1 14917230 14917528 -227746825 - AluY SINE Alu -14 297 1 321 272 87 0 chr1 14917534 14917626 -227746727 - MIR SINE MIR -51 211 112 260 282 0 12 chr1 14918258 14918343 -227746010 + G-rich Low_complexity Low_complexity 2 85 0 313 350 8 17 chr1 14918883 14919000 -227745353 - MIR SINE MIR -59 149 34 272 210 32 0 chr1 14919155 14919217 -227745136 - L2 LINE L2 -3 3269 3206 263 341 11 0 chr1 14919915 14920006 -227744347 - MIR SINE MIR -27 235 144 1926 180 19 15 chr1 14920191 14920603 -227743750 + Charlie1 DNA MER1_type 2348 2761 0 383 125 0 0 chr1 14920603 14920657 -227743696 + MLT1L LTR MaLR 148 201 -414 369 267 20 13 chr1 14920658 14920784 -227743569 + MLT1K LTR MaLR 150 276 -339 446 187 168 0 chr1 14921037 14921144 -227743209 - MIR SINE MIR -55 153 35 428 274 55 43 chr1 14921441 14921605 -227742748 - LTR67 LTR ERVL -1 556 391 2400 92 0 0 chr1 14921646 14921940 -227742413 + AluSc SINE Alu 1 294 -15 413 357 18 6 chr1 14921953 14922121 -227742232 + L2 LINE L2 2936 3105 -208 230 191 0 0 chr1 14922978 14923025 -227741328 + ORSL DNA AcHobo 229 275 0 249 108 0 0 chr1 14923214 14923251 -227741102 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 201 321 131 0 chr1 14923251 14923335 -227741018 - L2 LINE L2 -28 3285 3191 251 206 44 0 chr1 14923364 14923432 -227740921 - L2 LINE L2 -200 3072 3002 436 281 20 77 chr1 14923469 14923665 -227740688 - MIR SINE MIR -31 231 47 2228 123 0 0 chr1 14924587 14924887 -227739466 - AluSg SINE Alu -4 306 7 369 227 33 93 chr1 14924911 14925061 -227739292 + L2 LINE L2 3173 3313 0 236 212 15 0 chr1 14925544 14925610 -227738743 + GA-rich Low_complexity Low_complexity 2 68 0 356 221 88 29 chr1 14926127 14926263 -227738090 - L1ME4a LINE L1 -1 6120 5977 180 247 14 123 chr1 14926393 14926466 -227737887 - MER5A DNA MER1_type 0 189 125 2532 75 6 0 chr1 14926466 14926815 -227737538 + L1PB1 LINE L1 5800 6150 -1 2564 53 7 3 chr1 14926836 14927139 -227737214 + AluY SINE Alu 2 305 -6 809 168 0 0 chr1 14927151 14927282 -227737071 + FLAM_C SINE Alu 1 131 -2 227 317 59 20 chr1 14927282 14927383 -227736970 + MER5A DNA MER1_type 66 170 -19 846 163 363 0 chr1 14928084 14928324 -227736029 - MER58B DNA MER1_type -8 333 7 187 258 48 16 chr1 14928365 14928427 -227735926 + L3 LINE CR1 1372 1435 -142 338 156 0 31 chr1 14928465 14928529 -227735824 - LTR16C LTR ERVL 0 491 430 323 311 99 0 chr1 14928529 14928680 -227735673 - L1MC3 LINE L1 -1907 5878 5713 1198 268 72 18 chr1 14928692 14928848 -227735505 + MLT1I LTR MaLR 1 147 -262 1468 110 50 0 chr1 14928848 14929067 -227735286 - MER30 DNA MER1_type 0 230 1 1198 268 72 18 chr1 14929067 14929298 -227735055 + MLT1I LTR MaLR 147 409 0 259 205 9 125 chr1 14930849 14930961 -227733392 - MIR SINE MIR -7 255 157 413 241 56 9 chr1 14930978 14931086 -227733267 - L2 LINE L2 0 3313 3201 2339 100 3 0 chr1 14931171 14931470 -227732883 - AluSp SINE Alu -13 300 1 186 71 0 0 chr1 14931487 14931515 -227732838 + (TC)n Simple_repeat Simple_repeat 1 28 0 312 27 0 0 chr1 14931515 14931552 -227732801 + (TG)n Simple_repeat Simple_repeat 2 38 0 1680 198 0 3 chr1 14931555 14931838 -227732515 - AluJo SINE Alu -30 282 1 834 197 26 79 chr1 14931857 14932085 -227732268 + MER20 DNA MER1_type 1 216 -3 889 129 0 0 chr1 14932329 14932461 -227731892 + FLAM_C SINE Alu 1 132 -1 242 341 37 19 chr1 14932525 14932739 -227731614 - L2 LINE L2 -213 3059 2842 614 209 129 25 chr1 14933199 14933362 -227730991 + MER5A DNA MER1_type 10 189 0 2414 72 0 0 chr1 14933574 14933865 -227730488 - AluSc SINE Alu -18 291 1 388 298 23 8 chr1 14933875 14934006 -227730347 + MIR SINE MIR 72 204 -58 2322 81 3 3 chr1 14934550 14934984 -227729369 - AluSp SINE Alu 0 434 1 744 302 21 8 chr1 14935010 14935245 -227729108 + MIR SINE MIR 13 250 -12 322 241 12 0 chr1 14935541 14935624 -227728729 - MIR SINE MIR -116 146 63 467 194 10 10 chr1 14935863 14935966 -227728387 + MER5A DNA MER1_type 4 106 -83 347 305 35 74 chr1 14936137 14936340 -227728013 - MIR SINE MIR -58 204 10 446 292 15 8 chr1 14936352 14936482 -227727871 + L2 LINE L2 3178 3308 -5 1332 221 102 68 chr1 14937108 14937578 -227726775 + MLT1G LTR MaLR 85 570 -20 465 373 35 0 chr1 14937591 14937792 -227726561 + MIR SINE MIR 21 228 -34 323 364 62 10 chr1 14937985 14938180 -227726173 + MIR SINE MIR 56 260 -2 419 311 17 71 chr1 14938643 14938881 -227725472 - MIR SINE MIR -10 252 28 292 195 146 12 chr1 14939439 14939521 -227724832 - MIR3 SINE MIR -45 163 71 833 138 88 88 chr1 14939531 14939748 -227724605 + MER20 DNA MER1_type 3 219 0 341 287 7 68 chr1 14939832 14939994 -227724359 - MIR3 SINE MIR -66 142 2 747 255 20 51 chr1 14940176 14940431 -227723922 - MIR SINE MIR -1 261 15 528 244 96 117 chr1 14940468 14940895 -227723458 + MLT1K LTR MaLR 59 476 -112 339 214 24 125 chr1 14940904 14941072 -227723281 + MLT1K LTR MaLR 438 588 0 679 239 37 60 chr1 14941213 14941481 -227722872 - MIR SINE MIR 0 262 1 523 238 104 36 chr1 14942198 14942391 -227721962 + MER63A DNA MER1_type 1 206 -4 255 61 0 0 chr1 14942484 14942517 -227721836 + (T)n Simple_repeat Simple_repeat 1 33 0 2471 89 3 0 chr1 14942645 14942948 -227721405 - AluSp SINE Alu -9 304 1 208 158 26 0 chr1 14943137 14943175 -227721178 + CT-rich Low_complexity Low_complexity 2 40 0 534 31 0 0 chr1 14943463 14943527 -227720826 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 2754 246 137 23 chr1 14943553 14944810 -227719543 + L2 LINE L2 1862 3313 0 1134 117 0 0 chr1 14944818 14944997 -227719356 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 960 161 0 0 chr1 14945033 14945266 -227719087 + (TCCA)n Simple_repeat Simple_repeat 1 233 0 252 275 174 20 chr1 14945528 14945544 -227718809 - MIR SINE MIR -65 197 185 912 169 106 0 chr1 14945544 14945733 -227718620 - MER3 DNA MER1_type 0 209 1 252 275 174 20 chr1 14945733 14945865 -227718488 - MIR SINE MIR -77 185 26 246 287 59 37 chr1 14945953 14946089 -227718264 + L2 LINE L2 2236 2374 -940 338 259 25 99 chr1 14946104 14946266 -227718087 + MLT1K LTR MaLR 57 206 -382 387 0 0 0 chr1 14946319 14946362 -227717991 + (CA)n Simple_repeat Simple_repeat 1 43 0 566 263 25 68 chr1 14947254 14947373 -227716980 - MIR SINE MIR -17 245 139 2120 138 7 0 chr1 14947373 14947677 -227716676 + AluSx SINE Alu 3 308 -4 566 263 25 68 chr1 14947677 14947793 -227716560 - MIR SINE MIR -123 139 20 987 150 0 0 chr1 14949161 14949314 -227715039 - FRAM SINE Alu -13 153 1 415 207 107 25 chr1 14949493 14949614 -227714739 + MIR SINE MIR 13 143 -119 263 223 34 40 chr1 14949761 14949936 -227714417 + (CGATG)n Simple_repeat Simple_repeat 5 178 0 182 152 0 22 chr1 14949941 14949987 -227714366 + (CTATG)n Simple_repeat Simple_repeat 5 49 0 309 323 21 0 chr1 14950424 14950520 -227713833 - MIR SINE MIR -71 191 94 1876 167 7 0 chr1 14951272 14951566 -227712787 - AluJo SINE Alu -16 296 1 273 215 8 74 chr1 14951797 14951918 -227712435 - L2 LINE L2 -272 3000 2888 1549 223 95 19 chr1 14951920 14952342 -227712011 - MLT1C LTR MaLR -8 459 6 183 275 25 50 chr1 14952868 14952948 -227711405 - L3 LINE CR1 -104 1473 1396 454 256 110 52 chr1 14953068 14953259 -227711094 - MIR SINE MIR -43 219 18 2323 90 3 0 chr1 14953423 14953722 -227710631 - AluSg SINE Alu -10 300 1 287 274 192 27 chr1 14954979 14955125 -227709228 + MIR SINE MIR 35 204 -58 1225 276 93 30 chr1 14955932 14956428 -227707925 - MLT1K LTR MaLR -6 582 56 424 79 22 124 chr1 14956575 14956614 -227707739 + MADE1 DNA Mariner 1 28 -52 2127 139 0 3 chr1 14956614 14956909 -227707444 - AluSx SINE Alu -18 294 1 424 79 22 124 chr1 14956909 14956958 -227707395 + MADE1 DNA Mariner 28 80 0 311 293 54 20 chr1 14957325 14957472 -227706881 + L1M4 LINE L1 2652 2803 -3343 2080 132 3 10 chr1 14957512 14957807 -227706546 + AluSx SINE Alu 3 295 -17 395 83 17 0 chr1 14957836 14957896 -227706457 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 555 278 68 19 chr1 14958539 14958744 -227705609 + MIR SINE MIR 5 219 -43 2464 45 0 17 chr1 14958776 14959065 -227705288 - AluY SINE Alu -12 299 16 2083 156 71 82 chr1 14959316 14959492 -227704861 + L1MB8 LINE L1 5622 5798 -380 2522 90 0 0 chr1 14959492 14959804 -227704549 + AluSx SINE Alu 1 312 0 2083 156 71 82 chr1 14959804 14960194 -227704159 + L1MB8 LINE L1 5798 6178 0 1837 138 29 55 chr1 14960450 14960762 -227703591 - AluJb SINE Alu -8 304 1 445 240 87 47 chr1 14960762 14960903 -227703450 - MIR SINE MIR -39 223 74 216 333 148 12 chr1 14960964 14961126 -227703227 - L3b LINE CR1 -206 1377 1194 240 289 143 0 chr1 14962194 14962300 -227702053 + MIR SINE MIR 49 170 -38 2537 156 31 11 chr1 14963205 14963653 -227700700 + MSTB2 LTR MaLR 1 457 0 284 214 0 0 chr1 14963791 14963847 -227700506 + MIR SINE MIR 91 146 -116 440 295 98 37 chr1 14964422 14964630 -227699723 + MIR SINE MIR 19 229 -33 186 281 167 10 chr1 14964810 14964906 -227699447 + L2 LINE L2 3201 3311 -2 249 384 9 9 chr1 14964913 14965030 -227699323 + MIR SINE MIR 24 140 -122 706 169 137 0 chr1 14965032 14965191 -227699162 - MER5A DNA MER1_type -1 188 5 285 357 9 9 chr1 14965915 14966027 -227698326 - MIR SINE MIR -127 135 24 251 323 219 10 chr1 14966206 14966407 -227697946 - MIR SINE MIR -3 259 17 229 319 160 8 chr1 14967283 14967402 -227696951 - L2 LINE L2 -3 3269 3133 645 231 39 19 chr1 14967439 14967595 -227696758 + MIR SINE MIR 42 200 -62 2339 88 3 7 chr1 14967770 14968064 -227696289 + AluSc SINE Alu 1 293 -16 241 185 15 92 chr1 14968569 14968634 -227695719 + MIR SINE MIR 203 262 0 2019 124 0 3 chr1 14970460 14970789 -227693564 - AluSx SINE Alu 0 328 1 188 283 0 33 chr1 14971292 14971352 -227693001 - L2 LINE L2 -42 3230 3173 * 321 228 228 8 chr1 14971349 14971476 -227692877 - MIR3 SINE MIR -27 181 27 211 258 97 0 chr1 14972402 14972464 -227691889 + L2 LINE L2 3241 3308 -5 2312 91 14 0 chr1 14973338 14973634 -227690719 + AluSc SINE Alu 1 300 -9 486 245 51 70 chr1 14973637 14973821 -227690532 + MIR SINE MIR 2 189 -63 1762 254 58 4 chr1 14974185 14974649 -227689704 + LTR16C LTR ERVL 1 489 -2 2431 186 23 45 chr1 14974742 14975258 -227689095 + MLT1D LTR MaLR 1 505 0 349 250 42 21 chr1 14975295 14975391 -227688962 - MIR SINE MIR -113 149 52 254 289 22 89 chr1 14975778 14975913 -227688440 - L2 LINE L2 -6 3266 3141 248 300 130 10 chr1 14975979 14976079 -227688274 - L2 LINE L2 -16 3256 3145 2044 142 38 57 chr1 14977051 14977113 -227687240 + L1MB3 LINE L1 5770 5832 -351 1957 159 7 7 chr1 14977113 14977414 -227686939 + AluJb SINE Alu 1 301 -11 2044 142 38 57 chr1 14977414 14977715 -227686638 + L1MB3 LINE L1 5832 6137 -46 2508 37 16 47 chr1 14977715 14978036 -227686317 + AluY SINE Alu 1 311 0 522 46 0 0 chr1 14978042 14978107 -227686246 + (TA)n Simple_repeat Simple_repeat 1 65 0 2044 142 38 57 chr1 14978107 14978157 -227686196 + L1MB3 LINE L1 6142 6183 0 2283 186 50 17 chr1 14978301 14978463 -227685890 + L1PA8 LINE L1 5629 5784 -388 2357 172 16 12 chr1 14978463 14978887 -227685466 + MSTB LTR MaLR 1 426 0 2283 186 50 17 chr1 14978887 14979247 -227685106 + L1PA8 LINE L1 5784 6168 -4 1299 207 3 50 chr1 14979242 14979561 -227684792 + L1ME2 LINE L1 5860 6163 -1 * 314 239 111 39 chr1 14979574 14979698 -227684655 - MER5A DNA MER1_type -28 161 19 720 198 21 64 chr1 14979879 14980066 -227684287 + MIR SINE MIR 34 212 -50 2351 211 30 29 chr1 14980067 14980625 -227683728 + MER74B LTR ERVL 59 617 -5 262 308 30 38 chr1 14980702 14980835 -227683518 + L2 LINE L2 3120 3251 -62 256 312 0 0 chr1 14980885 14980962 -227683391 + L2 LINE L2 3191 3267 -5 220 338 19 45 chr1 14980982 14981080 -227683273 - MIR3 SINE MIR -52 156 62 1883 201 74 83 chr1 14981080 14981637 -227682716 - MLT2B3 LTR ERVL 0 554 3 220 338 19 45 chr1 14981637 14981692 -227682661 - MIR3 SINE MIR -146 62 7 185 308 0 0 chr1 14982580 14982632 -227681721 + L2 LINE L2 3243 3294 -19 2943 132 0 0 chr1 14982729 14983176 -227681177 - L1MB7 LINE L1 -17 6167 5721 281 313 47 42 chr1 14983178 14983369 -227680984 - MIR SINE MIR -60 202 16 1348 175 13 9 chr1 14984695 14984923 -227679430 + AluJo SINE Alu 83 311 -1 435 335 13 25 chr1 14985510 14985668 -227678685 + MIR3 SINE MIR 5 160 -48 288 284 53 21 chr1 14985673 14985768 -227678585 - MER5A DNA MER1_type -4 185 88 242 284 14 0 chr1 14986113 14986187 -227678166 + MIR3 SINE MIR 119 193 -15 1205 258 94 41 chr1 14986601 14987089 -227677264 + LTR67 LTR ERVL 3 516 -41 693 286 37 11 chr1 14988320 14988509 -227675844 - L2 LINE L2 0 3313 3120 198 222 19 0 chr1 14988541 14988595 -227675758 + L2 LINE L2 3009 3063 -209 905 229 57 14 chr1 14988639 14988849 -227675504 - MER20 DNA MER1_type 0 219 1 505 211 0 10 chr1 14988865 14988969 -227675384 + MER5A DNA MER1_type 10 112 -77 510 320 61 17 chr1 14989030 14989211 -227675142 + MER5A DNA MER1_type 1 189 0 872 198 10 52 chr1 14989212 14989404 -227674949 + MER5A DNA MER1_type 6 189 0 250 121 91 0 chr1 14989547 14989613 -227674740 + GA-rich Low_complexity Low_complexity 3 74 0 1932 169 0 10 chr1 14989925 14990239 -227674114 - AluJo SINE Alu -1 311 1 680 181 0 15 chr1 14990280 14990413 -227673940 - MER20 DNA MER1_type 0 219 89 216 308 15 0 chr1 14991078 14991143 -227673210 + GA-rich Low_complexity Low_complexity 2 67 0 185 281 53 0 chr1 14991245 14991302 -227673051 + MIR SINE MIR 88 147 -61 932 267 75 34 chr1 14992530 14992705 -227671648 + MLT1C LTR MaLR 6 172 -295 1988 98 8 0 chr1 14992705 14992961 -227671392 + AluSc SINE Alu 39 296 -13 932 267 75 34 chr1 14992961 14993227 -227671126 + MLT1C LTR MaLR 172 465 -2 189 0 0 0 chr1 14993747 14993768 -227670585 + (T)n Simple_repeat Simple_repeat 1 21 0 194 297 0 16 chr1 14994009 14994073 -227670280 - MIR SINE MIR -94 168 106 295 258 37 121 chr1 14994681 14994746 -227669607 - MER5B DNA MER1_type -3 175 106 2520 83 0 6 chr1 14994746 14995059 -227669294 + AluY SINE Alu 1 311 0 295 258 37 121 chr1 14995059 14995183 -227669170 - MER5B DNA MER1_type -72 106 2 2464 181 41 39 chr1 14995237 14995264 -227669089 - L1MB2 LINE L1 -185 5986 5961 2152 122 0 0 chr1 14995264 14995550 -227668803 - AluSx SINE Alu -26 286 1 2464 181 41 39 chr1 14995550 14996039 -227668314 - L1MB2 LINE L1 -210 5961 5466 196 50 0 50 chr1 14996039 14996079 -227668274 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2464 181 41 39 chr1 14996079 14996125 -227668228 - L1MB2 LINE L1 -705 5466 5422 249 260 77 39 chr1 14996295 14996399 -227667954 + MIR SINE MIR 46 153 -109 1580 178 0 29 chr1 14996444 14996719 -227667634 + AluJo SINE Alu 21 287 -25 373 273 11 0 chr1 14996719 14996807 -227667546 + L1MC4 LINE L1 6615 6703 -1339 371 266 0 43 chr1 14996730 14996824 -227667529 - L1MC4 LINE L1 -1339 6703 6614 * 239 300 0 0 chr1 14996838 14996898 -227667455 + MIR SINE MIR 194 253 -9 384 171 0 0 chr1 14996968 14997050 -227667303 + (CA)n Simple_repeat Simple_repeat 2 83 0 325 253 22 146 chr1 14997597 14997775 -227666578 - MIR SINE MIR -83 179 24 1853 118 10 80 chr1 14997775 14998089 -227666264 - AluSx SINE Alu -20 292 1 1139 174 5 0 chr1 14998115 14998311 -227666042 + MER58A DNA MER1_type 28 224 0 459 309 27 13 chr1 14998516 14998665 -227665688 + MIR SINE MIR 98 248 -14 276 242 42 53 chr1 14999038 14999133 -227665220 + MIR SINE MIR 6 99 -163 216 0 0 0 chr1 14999135 14999159 -227665194 + (A)n Simple_repeat Simple_repeat 1 24 0 379 230 9 9 chr1 14999182 14999295 -227665058 + MER96B DNA MER1_type? 83 195 -222 236 220 220 0 chr1 14999333 14999424 -227664929 + MIR SINE MIR 149 259 -3 1758 146 39 4 chr1 15000432 15000732 -227663621 - AluSx SINE Alu 0 312 13 331 309 53 7 chr1 15001169 15001314 -227663039 - MIR SINE MIR -6 256 105 263 248 329 13 chr1 15001342 15001491 -227662862 - MIR SINE MIR 0 262 67 195 42 0 0 chr1 15001797 15001821 -227662532 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 290 252 26 35 chr1 15001886 15002001 -227662352 - L2 LINE L2 -1 3312 3199 746 193 50 7 chr1 15002177 15002317 -227662036 + MER5A DNA MER1_type 6 151 -38 2518 72 3 3 chr1 15002318 15002623 -227661730 + AluSp SINE Alu 1 305 -8 250 314 121 27 chr1 15002658 15002819 -227661534 + MIR SINE MIR 19 208 -54 2294 122 119 10 chr1 15002819 15003204 -227661149 + MSTA LTR MaLR 2 428 0 250 314 121 27 chr1 15003204 15003265 -227661088 + MIR SINE MIR 208 262 0 328 294 37 9 chr1 15003327 15003436 -227660917 + MER81 DNA DNA 1 112 -2 2710 149 18 2 chr1 15003463 15003907 -227660446 + LTR32 LTR ERVL 18 468 -3 638 216 126 6 chr1 15004548 15004715 -227659638 + MER5A DNA MER1_type 2 188 -1 856 169 5 82 chr1 15005369 15005392 -227658961 + MER20 DNA MER1_type 40 63 -156 2238 121 0 3 chr1 15005392 15005697 -227658656 - AluSq SINE Alu -9 304 1 856 169 5 82 chr1 15005697 15005868 -227658485 + MER20 DNA MER1_type 63 219 0 310 263 38 0 chr1 15005953 15006033 -227658320 - MIR SINE MIR -5 257 175 699 236 50 105 chr1 15006033 15006394 -227657959 + MER102b DNA MER1_type 1 341 0 180 286 63 0 chr1 15006619 15006682 -227657671 + L2 LINE L2 3165 3231 -82 605 221 32 13 chr1 15006732 15006886 -227657467 - MER20 DNA MER1_type -61 158 2 237 108 0 0 chr1 15006929 15006966 -227657387 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 897 181 0 0 chr1 15006970 15007147 -227657206 + (TGGG)n Simple_repeat Simple_repeat 3 179 0 432 181 0 0 chr1 15007179 15007262 -227657091 + (TGGG)n Simple_repeat Simple_repeat 2 84 0 1671 158 54 24 chr1 15009131 15009428 -227654925 - AluJo SINE Alu -6 306 1 405 200 0 0 chr1 15009571 15009646 -227654707 + MIR SINE MIR 66 140 -122 198 0 0 0 chr1 15009646 15009668 -227654685 + (A)n Simple_repeat Simple_repeat 1 22 0 183 345 36 12 chr1 15009680 15009764 -227654589 + MIR SINE MIR 142 227 -35 603 243 21 0 chr1 15010251 15010395 -227653958 + MIR SINE MIR 20 166 -96 386 302 75 42 chr1 15011397 15011609 -227652744 - L1ME4a LINE L1 -57 6064 5846 290 303 34 0 chr1 15011941 15012060 -227652293 + Charlie8 DNA MER1_type 73 195 -2222 1047 200 28 9 chr1 15012946 15013161 -227651192 + MER20 DNA MER1_type 1 219 0 927 179 18 12 chr1 15013268 15013436 -227650917 - AluJb SINE Alu -7 305 137 957 268 21 18 chr1 15013453 15013781 -227650572 - L1ME1 LINE L1 -26 6140 5812 6666 142 35 21 chr1 15013781 15015040 -227649313 + L1PA14 LINE L1 3980 5221 -940 2525 78 0 0 chr1 15015040 15015349 -227649004 + AluY SINE Alu 1 309 -2 6666 142 35 21 chr1 15015349 15015392 -227648961 + L1PA14 LINE L1 5221 5262 -899 2314 85 0 3 chr1 15015392 15015698 -227648655 + AluSq SINE Alu 4 308 -5 6666 142 35 21 chr1 15015698 15016538 -227647815 + L1PA14 LINE L1 5262 6160 -1 1836 209 47 59 chr1 15016565 15016872 -227647481 - L1ME1 LINE L1 -397 5769 5460 2211 119 58 0 chr1 15016872 15017251 -227647102 - L1MA5A LINE L1 0 6297 5897 1836 209 47 59 chr1 15017251 15017276 -227647077 - L1ME1 LINE L1 -706 5460 5436 2097 88 0 3 chr1 15017276 15017583 -227646770 - AluY SINE Alu 0 306 1 1836 209 47 59 chr1 15017583 15017935 -227646418 - L1ME1 LINE L1 -730 5436 5091 506 300 64 54 chr1 15017968 15018358 -227645995 + MLT1J LTR MaLR 113 506 -5 559 265 269 12 chr1 15018524 15018781 -227645572 + MLT1K LTR MaLR 104 426 -162 258 249 18 121 chr1 15018815 15019014 -227645339 - L2 LINE L2 -208 3064 2884 284 294 137 71 chr1 15020568 15020962 -227643391 - L2 LINE L2 -345 2969 2550 2326 91 0 0 chr1 15021102 15021410 -227642943 - AluSx SINE Alu 0 312 5 1882 208 49 22 chr1 15021446 15021898 -227642455 + MLT1C LTR MaLR 2 465 -2 297 223 15 115 chr1 15022001 15022131 -227642222 + MER5B DNA MER1_type 1 117 -61 692 248 36 82 chr1 15022152 15022411 -227641942 + MIR SINE MIR 12 248 -14 283 339 40 16 chr1 15023047 15023171 -227641182 + MIR SINE MIR 116 242 -20 544 262 39 58 chr1 15023407 15023613 -227640740 - MIR3 SINE MIR -6 202 1 417 186 168 26 chr1 15023818 15023931 -227640422 - MER20 DNA MER1_type 0 219 91 529 218 32 24 chr1 15024295 15024419 -227639934 + MER20 DNA MER1_type 47 171 -48 270 324 57 57 chr1 15024559 15024769 -227639584 - MIR SINE MIR -11 251 42 22 0 0 0 chr1 15025794 15025816 -227638537 + AT_rich Low_complexity Low_complexity 1 22 0 1962 164 115 8 chr1 15026038 15026411 -227637942 - MLT1D LTR MaLR 0 505 93 2100 117 0 0 chr1 15026484 15026784 -227637569 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr1 15027110 15027131 -227637222 + AT_rich Low_complexity Low_complexity 1 21 0 233 273 240 19 chr1 15028268 15028422 -227635931 - MLT1K LTR MaLR 0 588 401 720 279 22 11 chr1 15028799 15028982 -227635371 - MIR SINE MIR -77 185 1 31 0 0 0 chr1 15029145 15029176 -227635177 + AT_rich Low_complexity Low_complexity 1 31 0 833 136 0 0 chr1 15029178 15029296 -227635057 - FLAM_C SINE Alu -15 118 1 471 244 17 35 chr1 15029623 15029738 -227634615 - MER63A DNA MER1_type -35 175 63 2166 114 0 0 chr1 15030554 15030861 -227633492 + AluSx SINE Alu 1 307 -5 228 308 39 26 chr1 15030971 15031049 -227633304 + MIR SINE MIR 125 203 -59 189 0 0 0 chr1 15031701 15031722 -227632631 + (GA)n Simple_repeat Simple_repeat 1 21 0 567 297 27 14 chr1 15032031 15032179 -227632174 - L2 LINE L2 -6 3266 3117 822 252 211 24 chr1 15032192 15032707 -227631646 + L2 LINE L2 2689 3313 0 256 260 60 60 chr1 15033187 15033287 -227631066 + MIR SINE MIR 85 184 -78 256 213 0 0 chr1 15034972 15035019 -227629334 + L2 LINE L2 3226 3272 0 1995 228 42 26 chr1 15035110 15035252 -227629101 + L1M4 LINE L1 2397 2535 -3611 2258 94 0 0 chr1 15035252 15035560 -227628793 - AluY SINE Alu -3 308 1 1995 228 42 26 chr1 15035560 15036063 -227628290 + L1M4 LINE L1 2535 3052 -3094 4255 126 13 25 chr1 15036068 15036760 -227627593 - L1PA15 LINE L1 -9 6156 5473 298 353 9 17 chr1 15036776 15036892 -227627461 - MIR SINE MIR -131 131 17 2300 57 3 3 chr1 15036995 15037292 -227627061 - AluY SINE Alu -14 297 1 2403 90 64 6 chr1 15037781 15038125 -227626228 - THE1B LTR MaLR 0 364 1 585 271 28 39 chr1 15038861 15039042 -227625311 - MIR SINE MIR -78 184 6 377 299 29 15 chr1 15039296 15039433 -227624920 - MIR SINE MIR 0 262 124 2447 169 11 26 chr1 15039717 15040183 -227624170 + L1MB5 LINE L1 5708 6166 -8 1633 172 7 14 chr1 15040202 15040498 -227623855 + AluJo SINE Alu 2 295 -17 514 319 100 26 chr1 15040964 15041193 -227623160 + MIR SINE MIR 10 255 -7 363 387 7 0 chr1 15041325 15041462 -227622891 - MIR3 SINE MIR -49 159 22 299 291 0 36 chr1 15042031 15042141 -227622212 - MIR SINE MIR -4 258 153 601 175 36 90 chr1 15042141 15042307 -227622046 + Tigger1 DNA MER2_type 1 157 -2261 * 1400 129 14 0 chr1 15042301 15042510 -227621843 + Tigger1 DNA MER2_type 2207 2418 0 352 303 69 35 chr1 15043454 15043599 -227620754 + MIR3 SINE MIR 30 179 -29 200 211 0 99 chr1 15043834 15043905 -227620448 - MIR3 SINE MIR -7 201 138 1891 144 7 10 chr1 15044060 15044358 -227619995 - AluSx SINE Alu -15 297 1 217 175 32 48 chr1 15044380 15044443 -227619910 - MIR SINE MIR -131 77 16 198 242 32 48 chr1 15044494 15044556 -227619797 + L2 LINE L2 3202 3262 -10 464 301 71 23 chr1 15044633 15044879 -227619474 - MIR SINE MIR -9 253 4 199 286 78 7 chr1 15046835 15046871 -227617482 - MIR SINE MIR -28 234 202 716 190 140 45 chr1 15046871 15047071 -227617282 + MER20 DNA MER1_type 1 219 0 199 286 78 7 chr1 15047071 15047147 -227617206 - MIR SINE MIR -60 202 113 201 220 60 0 chr1 15047250 15047300 -227617053 - MIR SINE MIR -62 146 94 237 114 0 0 chr1 15047368 15047403 -227616950 + tRNA-Thr-ACA tRNA tRNA 1 35 -41 1046 204 0 0 chr1 15047687 15047868 -227616485 + MER58A DNA MER1_type 42 222 -2 1489 161 0 8 chr1 15047995 15048250 -227616103 - AluJo SINE Alu -13 299 47 2093 71 0 54 chr1 15049178 15049508 -227614845 + AluY SINE Alu 1 314 0 231 257 14 14 chr1 15049832 15049905 -227614448 + MIR SINE MIR 72 143 -66 474 286 67 52 chr1 15051613 15051823 -227612530 + MIR SINE MIR 47 259 -3 1001 249 11 35 chr1 15052269 15052530 -227611823 + MIR SINE MIR 8 262 0 530 225 42 25 chr1 15052611 15052731 -227611622 - L2 LINE L2 0 3313 3192 1272 170 5 9 chr1 15052772 15052990 -227611363 + MER20 DNA MER1_type 2 218 -1 669 253 95 59 chr1 15053572 15053764 -227610589 + MIR SINE MIR 13 212 -50 251 294 110 44 chr1 15053764 15053900 -227610453 + MIR SINE MIR 3 147 -115 2126 129 11 107 chr1 15053905 15054346 -227610007 + Tigger2a DNA MER2_type 2 400 -34 304 271 34 8 chr1 15058445 15058563 -227605790 - L1ME4a LINE L1 0 6121 6001 198 0 0 0 chr1 15059012 15059034 -227605319 + (T)n Simple_repeat Simple_repeat 1 22 0 39 50 0 0 chr1 15060522 15060582 -227603771 + GC_rich Low_complexity Low_complexity 1 60 0 25 31 0 0 chr1 15060753 15060785 -227603568 + GC_rich Low_complexity Low_complexity 1 32 0 282 143 0 0 chr1 15060916 15060965 -227603388 + (GGA)n Simple_repeat Simple_repeat 1 49 0 369 245 66 38 chr1 15062150 15062300 -227602053 - MIR SINE MIR -63 145 17 292 224 30 0 chr1 15062477 15062544 -227601809 - tRNA-Ile-ATT tRNA tRNA -4 73 5 3479 140 45 13 chr1 15062668 15063269 -227601084 + L1MB5 LINE L1 5555 6174 0 261 0 0 0 chr1 15063363 15063392 -227600961 + (TG)n Simple_repeat Simple_repeat 1 29 0 190 328 61 46 chr1 15063451 15063582 -227600771 + L2 LINE L2 3122 3254 -18 2159 95 3 13 chr1 15063990 15064305 -227600048 - AluSx SINE Alu 0 312 1 366 146 5 0 chr1 15064376 15064440 -227599913 - L1ME4a LINE L1 -566 5608 5543 1972 108 0 0 chr1 15064543 15064801 -227599552 - AluSg1 SINE Alu -16 293 36 479 259 0 36 chr1 15065458 15065597 -227598756 + MER94 DNA DNA 1 134 0 197 309 96 52 chr1 15065625 15065761 -227598592 - MIR3 SINE MIR -27 181 40 224 320 21 10 chr1 15065888 15065985 -227598368 + L2 LINE L2 2919 3016 -297 277 304 104 32 chr1 15066522 15066647 -227597706 - MIR SINE MIR -50 212 79 415 228 52 59 chr1 15067156 15067292 -227597061 + MER5A DNA MER1_type 55 189 0 288 0 0 0 chr1 15068250 15068282 -227596071 + (TG)n Simple_repeat Simple_repeat 2 33 0 670 299 50 14 chr1 15068756 15068977 -227595376 + MIR SINE MIR 24 252 -10 201 254 51 0 chr1 15068980 15069039 -227595314 + (ATGGTG)n Simple_repeat Simple_repeat 3 64 0 364 226 38 47 chr1 15071056 15071162 -227593191 - MER91A DNA MER1_type -10 186 82 601 249 12 29 chr1 15071555 15071728 -227592625 - MIR SINE MIR -88 174 5 2349 146 37 51 chr1 15071867 15072239 -227592114 + MSTB LTR MaLR 1 368 -58 2460 97 0 0 chr1 15072239 15072547 -227591806 - AluSx SINE Alu -4 308 1 2349 146 37 51 chr1 15072547 15072606 -227591747 + MSTB LTR MaLR 368 426 0 1615 178 0 48 chr1 15072879 15073188 -227591165 + AluJo SINE Alu 19 312 0 330 227 0 27 chr1 15073188 15073263 -227591090 - MIR3 SINE MIR -43 165 93 247 140 16 8 chr1 15074048 15074109 -227590244 + MLT1I LTR MaLR 73 120 -289 293 314 8 25 chr1 15074286 15074407 -227589946 + MLT1H LTR MaLR 431 549 0 2226 165 5 30 chr1 15074448 15074758 -227589595 - MLT1B LTR MaLR 0 390 91 2208 102 7 3 chr1 15074758 15075051 -227589302 + AluSp SINE Alu 1 294 -19 2226 165 5 30 chr1 15075051 15075140 -227589213 - MLT1B LTR MaLR -299 91 1 469 289 162 53 chr1 15075140 15075653 -227588700 - MLT1K LTR MaLR -19 569 1 271 350 28 56 chr1 15075752 15075932 -227588421 + MIR SINE MIR 37 211 -51 296 240 163 56 chr1 15075998 15076286 -227588067 + LTR16A LTR ERVL 73 384 -66 796 309 8 27 chr1 15076436 15076692 -227587661 + MIR SINE MIR 2 252 -10 352 327 36 0 chr1 15076699 15076809 -227587544 - L2 LINE L2 -32 3240 3127 291 302 35 26 chr1 15077231 15077347 -227587006 - MIR3 SINE MIR 0 208 92 281 247 65 110 chr1 15077431 15077585 -227586768 + MIR3 SINE MIR 22 168 -40 2715 254 115 33 chr1 15077587 15078992 -227585361 - L2 LINE L2 -12 3301 1789 235 257 0 105 chr1 15078944 15079049 -227585304 + MIR SINE MIR 162 255 -7 * 1429 81 6 0 chr1 15079183 15079396 -227584957 - AluSp SINE Alu 0 322 109 266 266 13 13 chr1 15080186 15080265 -227584088 + CT-rich Low_complexity Low_complexity 2 80 0 884 138 0 8 chr1 15080567 15080697 -227583656 + FLAM_C SINE Alu 9 137 -6 1400 199 52 4 chr1 15080699 15080818 -227583535 + AluJo SINE Alu 1 113 -199 189 0 0 0 chr1 15080818 15080839 -227583514 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1400 199 52 4 chr1 15080839 15080986 -227583367 + AluJo SINE Alu 113 280 -32 336 161 0 0 chr1 15080986 15081048 -227583305 + GA-rich Low_complexity Low_complexity 3 64 0 282 29 0 0 chr1 15081059 15081094 -227583259 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 688 272 25 0 chr1 15081580 15081780 -227582573 - MIR SINE MIR -40 222 15 1825 166 0 35 chr1 15083899 15084212 -227580141 - AluJb SINE Alu -10 302 1 453 267 34 75 chr1 15084261 15084412 -227579941 - MIR SINE MIR -63 145 6 2101 129 0 10 chr1 15084526 15084821 -227579532 - AluSx SINE Alu -20 292 1 554 188 27 0 chr1 15085241 15085353 -227579000 + MLT1A1 LTR MaLR 185 299 -66 197 32 0 32 chr1 15085563 15085594 -227578759 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 764 160 0 8 chr1 15085608 15085727 -227578626 - FLAM_C SINE Alu -24 119 2 404 125 0 0 chr1 15085874 15085938 -227578415 + L1PB1 LINE L1 6086 6149 -2 28 29 0 0 chr1 15085938 15085973 -227578380 + AT_rich Low_complexity Low_complexity 1 35 0 1772 183 27 43 chr1 15086400 15086771 -227577582 + MLT1A1 LTR MaLR 1 365 0 273 265 44 0 chr1 15086784 15086852 -227577501 + MIR3 SINE MIR 91 161 -47 2583 140 80 2 chr1 15086892 15087293 -227577060 + MSTB1 LTR MaLR 1 432 0 302 318 20 27 chr1 15087309 15087457 -227576896 + MER117 DNA MER1_type 49 195 -2 729 266 42 68 chr1 15087501 15087764 -227576589 + MIR SINE MIR 2 257 -5 305 268 18 89 chr1 15087841 15088009 -227576344 + L1ME4a LINE L1 5880 6035 -86 809 215 78 49 chr1 15088959 15089243 -227575110 - L1MD2 LINE L1 0 6359 6068 341 188 23 148 chr1 15089243 15089371 -227574982 - MIR SINE MIR -64 198 87 537 281 67 11 chr1 15089894 15090072 -227574281 + MER117 DNA MER1_type 10 197 0 368 306 37 0 chr1 15090089 15090197 -227574156 - MIR SINE MIR -78 130 19 391 336 27 7 chr1 15090368 15090514 -227573839 - MIR SINE MIR -4 258 110 591 261 7 7 chr1 15090550 15090688 -227573665 - MIR SINE MIR -18 244 107 189 175 200 38 chr1 15090720 15090800 -227573553 - MIR SINE MIR -90 118 26 3290 164 75 37 chr1 15091272 15091592 -227572761 + L1MB4 LINE L1 5442 5748 -432 1865 176 0 10 chr1 15091592 15091916 -227572437 + AluSq SINE Alu 1 313 0 219 88 0 0 chr1 15091921 15091955 -227572398 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 3290 164 75 37 chr1 15091955 15092331 -227572022 + L1MB4 LINE L1 5751 6171 -9 192 231 0 0 chr1 15092595 15092634 -227571719 + L2 LINE L2 3021 3059 -254 219 139 0 0 chr1 15093887 15093923 -227570430 + (T)n Simple_repeat Simple_repeat 1 36 0 541 267 40 15 chr1 15094226 15094428 -227569925 + L1ME3A LINE L1 5956 6162 -8 1816 145 27 27 chr1 15094429 15094725 -227569628 - AluJo SINE Alu -16 296 1 206 118 0 0 chr1 15094743 15094777 -227569576 + (A)n Simple_repeat Simple_repeat 1 34 0 591 259 37 31 chr1 15094792 15094954 -227569399 + MIR SINE MIR 76 238 -24 2382 79 7 0 chr1 15095728 15096019 -227568334 - AluSx SINE Alu -16 296 4 195 290 29 14 chr1 15096343 15096412 -227567941 + L2 LINE L2 3194 3263 -9 181 273 23 0 chr1 15096738 15096782 -227567571 + L2 LINE L2 3250 3294 -19 * 289 286 50 76 chr1 15096773 15096892 -227567461 - L2 LINE L2 -10 3303 3188 629 187 8 32 chr1 15096899 15097022 -227567331 - L2 LINE L2 -13 3300 3181 253 262 117 29 chr1 15097863 15097966 -227566387 - L2 LINE L2 -23 3290 3179 1769 184 3 20 chr1 15099976 15100281 -227564072 - AluJo SINE Alu -12 300 1 507 268 49 12 chr1 15100287 15100451 -227563902 + MIR SINE MIR 46 215 -47 1335 248 81 13 chr1 15101110 15101667 -227562686 + MLT1E3 LTR MaLR 5 624 0 770 272 137 40 chr1 15101875 15102305 -227562048 + L2 LINE L2 2829 3300 -13 216 0 0 0 chr1 15102305 15102329 -227562024 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 404 260 94 83 chr1 15102484 15102561 -227561792 + MER5A DNA MER1_type 1 76 -113 2199 104 0 39 chr1 15102561 15102868 -227561485 + AluSq SINE Alu 1 295 -18 414 0 0 0 chr1 15102871 15102917 -227561436 + (CA)n Simple_repeat Simple_repeat 2 47 0 404 260 94 83 chr1 15102917 15103016 -227561337 + MER5A DNA MER1_type 77 183 -6 2502 47 0 3 chr1 15103812 15104112 -227560241 + AluY SINE Alu 1 299 -12 471 189 112 97 chr1 15104486 15104561 -227559792 + MER5A DNA MER1_type 4 76 -113 2274 92 19 29 chr1 15104561 15104875 -227559478 + AluSp SINE Alu 3 313 0 471 189 112 97 chr1 15104875 15104982 -227559371 + MER5A DNA MER1_type 76 189 0 207 214 24 0 chr1 15104982 15105022 -227559331 - MIR SINE MIR -98 164 124 2604 192 20 53 chr1 15106304 15106505 -227557848 - MER119 DNA MER1_type -3 580 374 1967 177 0 0 chr1 15106505 15106815 -227557538 - AluSx SINE Alu -2 310 1 2604 192 20 53 chr1 15106815 15107213 -227557140 - MER119 DNA MER1_type -209 374 1 291 316 86 38 chr1 15107226 15107435 -227556918 - MIR SINE MIR -23 239 21 331 282 69 52 chr1 15107460 15107634 -227556719 + MIR SINE MIR 47 223 -39 246 266 78 0 chr1 15108303 15108367 -227555986 + MIR3 SINE MIR 14 82 -126 606 315 30 5 chr1 15108523 15108723 -227555630 + MIR SINE MIR 3 207 -55 2357 75 0 10 chr1 15108790 15109082 -227555271 + AluSg SINE Alu 1 289 -21 1042 179 104 21 chr1 15109096 15109336 -227555017 - MER58B DNA MER1_type -1 340 81 464 270 34 34 chr1 15110281 15110429 -227553924 - MIR SINE MIR -57 205 58 267 275 44 35 chr1 15110535 15110653 -227553700 + MER5B DNA MER1_type 2 104 -74 2734 134 11 88 chr1 15110707 15110854 -227553499 + MER1A DNA MER1_type 35 192 -2510 2591 70 0 3 chr1 15110854 15111168 -227553185 - AluSq SINE Alu 0 313 1 2734 134 11 88 chr1 15111168 15111414 -227552939 + MER1A DNA MER1_type 192 379 -2323 2273 72 48 0 chr1 15111414 15111705 -227552648 + AluSp SINE Alu 9 313 0 2734 134 11 88 chr1 15111705 15111846 -227552507 + MER1A DNA MER1_type 379 529 0 334 314 60 5 chr1 15112142 15112259 -227552094 + MIR SINE MIR 2 121 -87 950 159 77 0 chr1 15112295 15112465 -227551888 - MER5A DNA MER1_type -4 185 3 478 223 160 6 chr1 15113274 15113425 -227550928 + MER5A DNA MER1_type 4 181 -8 365 255 170 21 chr1 15113476 15113617 -227550736 + MIR SINE MIR 28 189 -73 221 317 121 81 chr1 15113614 15114011 -227550342 - L2 LINE L2 -3 3310 2898 * 517 236 0 9 chr1 15115247 15115353 -227549000 + L2 LINE L2 3200 3304 -9 1861 171 16 16 chr1 15116019 15116328 -227548025 - AluJb SINE Alu -3 309 1 299 295 38 60 chr1 15116344 15116527 -227547826 + L1MC5 LINE L1 7751 7929 -32 324 293 135 90 chr1 15116930 15116992 -227547361 - L1MC4a LINE L1 -1930 5878 5820 2232 120 13 3 chr1 15116992 15117300 -227547053 - AluSx SINE Alu -1 311 1 324 293 135 90 chr1 15117300 15117571 -227546782 - L1MC4a LINE L1 -1988 5820 5530 2795 104 0 5 chr1 15117673 15118048 -227546305 - THE1C LTR MaLR -2 373 1 1032 119 0 0 chr1 15118306 15118449 -227545904 + AluSg/x SINE Alu 152 294 -18 223 348 85 17 chr1 15119028 15119146 -227545207 + MIR SINE MIR 24 149 -113 1043 294 101 29 chr1 15119146 15119312 -227545041 + L2 LINE L2 2815 2968 -345 2285 125 0 0 chr1 15119312 15119615 -227544738 - AluSx SINE Alu -9 303 1 1043 294 101 29 chr1 15119615 15119904 -227544449 + L2 LINE L2 2968 3303 -10 801 214 140 39 chr1 15121476 15121812 -227542541 + MLT1C LTR MaLR 18 387 -80 362 330 76 0 chr1 15121815 15121933 -227542420 + L2 LINE L2 3141 3267 -5 253 411 76 13 chr1 15122536 15122840 -227541513 - L2 LINE L2 -572 2742 2420 225 224 0 0 chr1 15122976 15123034 -227541319 + (CA)n Simple_repeat Simple_repeat 1 58 0 600 132 0 11 chr1 15123985 15124076 -227540277 + AluJo SINE Alu 46 135 -177 2073 153 3 6 chr1 15124076 15124389 -227539964 + AluJb SINE Alu 1 312 0 1559 199 3 52 chr1 15125188 15125514 -227538839 - AluJo SINE Alu -2 310 1 967 203 56 0 chr1 15125514 15125711 -227538642 - MER20 DNA MER1_type -11 208 1 397 281 69 30 chr1 15125838 15126041 -227538312 + MLT1H LTR MaLR 109 319 -230 512 301 127 34 chr1 15126833 15127218 -227537135 + L2 LINE L2 2553 2973 -341 857 234 157 71 chr1 15127218 15127709 -227536644 - MLT1F1 LTR MaLR 0 567 10 893 167 0 0 chr1 15127814 15127946 -227536407 - FLAM_A SINE Alu -1 132 1 1792 141 3 34 chr1 15127979 15128270 -227536083 - AluJo SINE Alu -30 282 1 946 257 127 40 chr1 15128274 15128964 -227535389 - L2 LINE L2 -10 3303 2535 224 338 84 0 chr1 15129033 15129104 -227535249 + L2 LINE L2 3119 3195 -77 352 277 15 58 chr1 15129173 15129310 -227535043 + MIR SINE MIR 18 148 -60 339 309 170 5 chr1 15129922 15130110 -227534243 + MIR SINE MIR 20 238 -24 326 259 52 52 chr1 15131221 15131337 -227533016 + L2 LINE L2 3197 3312 -1 262 75 100 0 chr1 15132354 15132394 -227531959 - LTR33 LTR ERVL -2 519 476 1321 182 68 46 chr1 15132428 15132543 -227531810 + MLT1B LTR MaLR 1 112 -278 5112 107 13 18 chr1 15132543 15132768 -227531585 - L1MA5A LINE L1 -1 6296 6071 3476 122 11 39 chr1 15132768 15133310 -227531043 - MER1A DNA MER1_type 0 527 1 5112 107 13 18 chr1 15133310 15133869 -227530484 - L1MA5A LINE L1 -226 6071 5516 1321 182 68 46 chr1 15133869 15134162 -227530191 + MLT1B LTR MaLR 112 371 -19 362 272 82 38 chr1 15134258 15134416 -227529937 - LTR33 LTR ERVL -229 292 128 1487 173 11 35 chr1 15135262 15135546 -227528807 - AluJb SINE Alu -5 307 31 2655 103 11 16 chr1 15135546 15135923 -227528430 - THE1C LTR MaLR 0 375 1 445 275 99 33 chr1 15136049 15136231 -227528122 + MIR SINE MIR 45 238 -24 360 0 0 0 chr1 15136805 15136845 -227527508 + (CA)n Simple_repeat Simple_repeat 1 40 0 1915 146 13 26 chr1 15137359 15137661 -227526692 - AluJb SINE Alu -14 298 1 1753 157 3 49 chr1 15137741 15138047 -227526306 + AluJo SINE Alu 1 292 -20 1956 81 4 0 chr1 15138687 15138922 -227525431 - AluSg SINE Alu -16 294 59 740 302 65 44 chr1 15139044 15139249 -227525104 + L2 LINE L2 2779 2978 -335 762 244 38 38 chr1 15139249 15139458 -227524895 - MER63A DNA MER1_type -1 209 1 740 302 65 44 chr1 15139458 15139773 -227524580 + L2 LINE L2 2978 3308 -5 1589 147 0 114 chr1 15141822 15142163 -227522190 - AluJo SINE Alu 0 302 1 1147 166 11 0 chr1 15142359 15142546 -227521807 + MER5A DNA MER1_type 1 189 0 270 326 65 69 chr1 15142770 15143015 -227521338 + L2 LINE L2 3028 3271 -1 2367 96 7 0 chr1 15143368 15143661 -227520692 + AluSg SINE Alu 1 295 -15 795 293 0 15 chr1 15144345 15144550 -227519803 - MIR SINE MIR -46 216 15 222 37 0 0 chr1 15144680 15144707 -227519646 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2051 140 7 3 chr1 15146229 15146522 -227517831 - AluSx SINE Alu -18 294 1 842 77 0 8 chr1 15146630 15146747 -227517606 + Tigger2 DNA MER2_type 584 699 -2019 22 0 0 0 chr1 15147103 15147125 -227517228 + AT_rich Low_complexity Low_complexity 1 22 0 2124 130 0 16 chr1 15147380 15147688 -227516665 + AluSx SINE Alu 1 303 -9 219 262 0 16 chr1 15147783 15147844 -227516509 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 198 275 25 50 chr1 15148870 15148950 -227515403 - L3 LINE CR1 -104 1473 1396 491 256 110 52 chr1 15149070 15149261 -227515092 - MIR SINE MIR -43 219 18 2305 90 3 0 chr1 15149425 15149724 -227514629 - AluSg SINE Alu -10 300 1 314 274 192 27 chr1 15150981 15151127 -227513226 + MIR SINE MIR 35 204 -58 1129 273 94 31 chr1 15151934 15152422 -227511931 - MLT1K LTR MaLR -6 582 64 453 79 22 124 chr1 15152577 15152616 -227511737 + MADE1 DNA Mariner 1 28 -52 2117 139 0 3 chr1 15152616 15152911 -227511442 - AluSx SINE Alu -18 294 1 453 79 22 124 chr1 15152911 15152960 -227511393 + MADE1 DNA Mariner 28 80 0 293 293 54 20 chr1 15153327 15153474 -227510879 + L1M4 LINE L1 2652 2803 -3343 2070 132 3 10 chr1 15153514 15153809 -227510544 + AluSx SINE Alu 3 295 -17 395 83 17 0 chr1 15153838 15153898 -227510455 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 594 278 68 19 chr1 15154541 15154746 -227509607 + MIR SINE MIR 5 219 -43 2449 45 0 17 chr1 15154778 15155067 -227509286 - AluY SINE Alu -12 299 16 2073 153 74 72 chr1 15155353 15155494 -227508859 + L1MB8 LINE L1 5644 5783 -395 2514 90 0 0 chr1 15155494 15155806 -227508547 + AluSx SINE Alu 1 312 0 2073 153 74 72 chr1 15155806 15156196 -227508157 + L1MB8 LINE L1 5783 6178 0 1828 138 29 55 chr1 15156452 15156764 -227507589 - AluJb SINE Alu -8 304 1 480 240 87 47 chr1 15156764 15156905 -227507448 - MIR SINE MIR -39 223 74 246 350 153 6 chr1 15156971 15157128 -227507225 - L3b LINE CR1 -210 1373 1194 259 292 139 0 chr1 15158191 15158307 -227506046 + MIR SINE MIR 45 175 -33 2689 158 31 11 chr1 15159207 15159655 -227504698 + MSTB2 LTR MaLR 1 457 0 300 185 0 0 chr1 15159793 15159847 -227504506 + MIR SINE MIR 92 145 -63 194 211 0 127 chr1 15160350 15160421 -227503932 + L2 LINE L2 2916 2977 -336 472 290 103 50 chr1 15160424 15160632 -227503721 + MIR SINE MIR 19 229 -11 205 281 167 10 chr1 15160812 15160908 -227503445 + L2 LINE L2 3201 3311 -2 260 385 8 8 chr1 15160915 15161032 -227503321 + MIR SINE MIR 24 140 -122 706 169 137 0 chr1 15161034 15161193 -227503160 - MER5A DNA MER1_type -1 188 5 285 357 9 9 chr1 15161917 15162029 -227502324 - MIR SINE MIR -127 135 24 251 323 219 10 chr1 15162208 15162409 -227501944 - MIR SINE MIR -3 259 17 225 303 168 17 chr1 15163286 15163405 -227500948 - L2 LINE L2 -3 3269 3133 645 231 39 19 chr1 15163442 15163598 -227500755 + MIR SINE MIR 42 200 -62 2388 88 0 7 chr1 15163773 15164068 -227500285 + AluSc SINE Alu 1 293 -16 228 185 15 92 chr1 15164573 15164638 -227499715 + MIR SINE MIR 203 262 0 206 167 42 21 chr1 15164935 15164983 -227499370 + MIR3 SINE MIR 118 166 -42 315 212 143 28 chr1 15165562 15165702 -227498651 - MIR SINE MIR -63 145 37 204 235 12 37 chr1 15165757 15165838 -227498515 + GA-rich Low_complexity Low_complexity 4 82 0 552 234 12 70 chr1 15165957 15166004 -227498349 - L2 LINE L2 0 3313 3265 1981 143 10 7 chr1 15166004 15166304 -227498049 - AluJo SINE Alu -7 305 5 552 234 12 70 chr1 15166304 15166427 -227497926 - L2 LINE L2 -48 3265 3153 323 311 8 23 chr1 15167067 15167199 -227497154 + MIR SINE MIR 25 154 -108 196 286 0 76 chr1 15167285 15167404 -227496949 + MIR SINE MIR 129 238 -24 207 0 0 0 chr1 15167484 15167507 -227496846 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 453 234 93 0 chr1 15167706 15167813 -227496540 + MER103 DNA DNA 1 117 -49 1016 322 94 2 chr1 15167864 15168289 -227496064 + LTR16B LTR ERVL 1 464 0 931 179 8 0 chr1 15168407 15169082 -227495271 + (TCCA)n Simple_repeat Simple_repeat 1 680 0 462 228 9 9 chr1 15169084 15169198 -227495155 + (CCCA)n Simple_repeat Simple_repeat 1 114 0 431 221 14 62 chr1 15169603 15169748 -227494605 - MIR SINE MIR -34 228 91 291 307 64 29 chr1 15170368 15170508 -227493845 + L2 LINE L2 2902 3046 -226 292 246 82 93 chr1 15170558 15170741 -227493612 + L2 LINE L2 2944 3124 -189 748 268 96 61 chr1 15170843 15171250 -227493103 + HAL1 LINE L1 2087 2507 0 832 304 110 13 chr1 15171731 15172178 -227492175 - L2 LINE L2 0 3313 2824 475 250 36 0 chr1 15172281 15172393 -227491960 + MER63 DNA MER1_type 42 783 -53 2477 57 40 3 chr1 15172571 15172871 -227491482 - AluY SINE Alu 0 311 1 210 345 69 0 chr1 15172917 15173004 -227491349 + L2 LINE L2 2897 2989 -324 559 291 87 12 chr1 15174570 15174811 -227489542 - MIR SINE MIR 0 262 4 1948 152 0 3 chr1 15175085 15175368 -227488985 + AluSx SINE Alu 1 282 -30 226 235 0 0 chr1 15175584 15175635 -227488718 + L1ME1 LINE L1 5610 5660 -510 1195 182 35 117 chr1 15175678 15176047 -227488306 + MLT1A1 LTR MaLR 27 365 0 284 222 5 152 chr1 15176047 15176152 -227488201 + L1ME1 LINE L1 5704 5823 -343 1707 148 94 4 chr1 15176152 15176261 -227488092 + AluJo SINE Alu 1 99 -213 219 36 0 0 chr1 15176261 15176289 -227488064 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1707 148 94 4 chr1 15176289 15176456 -227487897 + AluJo SINE Alu 99 302 -10 284 222 5 152 chr1 15176456 15176508 -227487845 + L1ME1 LINE L1 5823 5815 -351 2274 83 3 3 chr1 15176508 15176796 -227487557 + AluSp SINE Alu 1 288 -25 284 222 5 152 chr1 15176796 15176875 -227487478 + L1ME1 LINE L1 5814 5903 -263 30 0 0 0 chr1 15176886 15176916 -227487437 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr1 15177196 15177236 -227487117 + AT_rich Low_complexity Low_complexity 1 40 0 442 257 74 27 chr1 15178361 15178509 -227485844 + MIR SINE MIR 46 200 -62 225 300 75 33 chr1 15179200 15179320 -227485033 + L2 LINE L2 3187 3311 -2 2605 69 0 0 chr1 15179346 15179650 -227484703 + AluY SINE Alu 1 304 -7 2239 129 0 0 chr1 15179671 15179973 -227484380 + AluSx SINE Alu 1 302 -10 459 52 0 0 chr1 15179979 15180037 -227484316 + (TG)n Simple_repeat Simple_repeat 1 58 0 524 255 64 75 chr1 15180445 15180712 -227483641 + LTR16C LTR ERVL 228 491 0 1132 238 28 11 chr1 15180980 15181266 -227483087 - MER58B DNA MER1_type -12 329 39 1222 125 60 19 chr1 15181282 15181498 -227482855 - MER30 DNA MER1_type -4 226 2 687 286 96 32 chr1 15181527 15181795 -227482558 + MLT1K LTR MaLR 224 520 -68 2302 97 3 7 chr1 15181795 15182094 -227482259 - AluSq SINE Alu -15 298 1 687 286 96 32 chr1 15182094 15182168 -227482185 + MLT1K LTR MaLR 520 588 0 255 31 0 0 chr1 15182635 15182667 -227481686 + (CAG)n Simple_repeat Simple_repeat 2 33 0 1067 65 0 0 chr1 15182847 15182971 -227481382 + AluSq/x SINE Alu 1 124 -188 2152 115 99 10 chr1 15183144 15183536 -227480817 + MSTA LTR MaLR 1 427 -1 1395 237 65 16 chr1 15183564 15183931 -227480422 + MLT1K LTR MaLR 137 521 -67 216 335 78 17 chr1 15184176 15184355 -227479998 + L2 LINE L2 2811 3000 -272 1176 143 0 0 chr1 15184423 15184584 -227479769 - FRAM SINE Alu -16 160 1 897 271 180 42 chr1 15184845 15185368 -227478985 + MLT1J LTR MaLR 8 602 -13 265 256 23 12 chr1 15185901 15185987 -227478366 + MER117 DNA MER1_type 111 197 0 1706 110 0 11 chr1 15186485 15186748 -227477605 + L1PB1 LINE L1 5891 6150 -1 253 354 112 6 chr1 15186970 15187131 -227477222 - MIR SINE MIR -65 197 20 185 292 42 14 chr1 15187934 15188006 -227476347 + MIR SINE MIR 47 120 -142 218 314 194 16 chr1 15188033 15188157 -227476196 - L2 LINE L2 -8 3305 3160 842 246 32 14 chr1 15188289 15188509 -227475844 + MIR SINE MIR 3 226 -36 234 62 0 0 chr1 15189288 15189320 -227475033 + (ATG)n Simple_repeat Simple_repeat 2 33 0 2463 87 0 0 chr1 15189875 15190175 -227474178 - AluSx SINE Alu -12 300 1 583 231 46 1 chr1 15190372 15190531 -227473822 - MER20B DNA MER1_type -17 202 33 194 260 10 125 chr1 15192129 15192225 -227472128 + MIR SINE MIR 89 151 -57 2064 137 3 39 chr1 15192225 15192478 -227471875 - MLT1B LTR MaLR -39 351 113 2034 108 14 11 chr1 15192478 15192756 -227471597 - AluSx SINE Alu -14 298 20 2064 137 3 39 chr1 15192756 15192866 -227471487 - MLT1B LTR MaLR -277 113 1 495 253 37 47 chr1 15193755 15193945 -227470408 + MER5A DNA MER1_type 1 188 -1 2243 116 3 7 chr1 15193998 15194300 -227470053 + AluSx SINE Alu 1 301 -11 1845 219 25 8 chr1 15194300 15194702 -227469651 - MLT2C2 LTR ERVL -55 409 1 666 292 83 52 chr1 15194925 15194942 -227469411 + LTR33 LTR ERVL 2 17 -504 2210 120 0 0 chr1 15194942 15195234 -227469119 - AluSq SINE Alu -21 292 1 666 292 83 52 chr1 15195234 15195720 -227468633 + LTR33 LTR ERVL 17 521 0 355 250 12 0 chr1 15196419 15196499 -227467854 - L2 LINE L2 -14 3299 3219 181 167 0 0 chr1 15196631 15196661 -227467692 + L2 LINE L2 3284 3313 0 * 332 293 19 9 chr1 15196658 15196764 -227467589 - L2 LINE L2 -12 3301 3195 314 303 89 0 chr1 15196908 15197071 -227467282 + MIR SINE MIR 2 177 -66 279 217 56 0 chr1 15197075 15197152 -227467201 + MLT1E LTR MaLR 6 94 -499 327 168 39 39 chr1 15197153 15197332 -227467021 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 302 294 0 0 chr1 15197333 15197401 -227466952 - L1MC4 LINE L1 -1354 6688 6621 1403 255 40 24 chr1 15197408 15197828 -227466525 + MLT1E LTR MaLR 165 591 -2 252 356 19 10 chr1 15199006 15199110 -227465243 - MIR SINE MIR -17 245 141 2020 122 37 0 chr1 15199493 15199788 -227464565 + AluSg SINE Alu 1 306 -4 251 396 9 0 chr1 15200098 15200204 -227464149 - MIR SINE MIR -15 247 141 1519 253 102 16 chr1 15200366 15200809 -227463544 - MLT1G1 LTR MaLR -42 553 73 196 298 53 53 chr1 15200854 15200968 -227463385 - MIR SINE MIR -129 133 20 1841 189 3 3 chr1 15201195 15201491 -227462862 + AluJo SINE Alu 3 298 -14 454 315 45 6 chr1 15201638 15201816 -227462537 + MER91A DNA MER1_type 2 186 -10 270 321 36 18 chr1 15202083 15202195 -227462158 + MIR SINE MIR 44 157 -105 575 218 55 12 chr1 15202198 15202363 -227461990 - MER104 DNA MER2_type -4 176 5 306 270 120 10 chr1 15203304 15203404 -227460949 + MIR SINE MIR 30 140 -122 520 278 73 48 chr1 15203513 15203786 -227460567 - L2 LINE L2 0 3313 3034 688 164 45 79 chr1 15203894 15204071 -227460282 + MER20 DNA MER1_type 49 219 0 929 272 79 63 chr1 15204858 15205299 -227459054 + MLT1L LTR MaLR 168 615 0 2256 119 0 6 chr1 15205409 15205720 -227458633 + AluSx SINE Alu 1 309 -3 1834 166 10 10 chr1 15206224 15206514 -227457839 - AluJb SINE Alu -16 296 7 359 268 50 42 chr1 15206574 15206724 -227457629 - LTR67 LTR ERVL -9 515 380 190 176 29 0 chr1 15207169 15207203 -227457150 + MIR SINE MIR 39 73 -189 2121 98 3 11 chr1 15208200 15208530 -227455823 - AluSx SINE Alu 0 328 1 628 291 133 65 chr1 15208550 15208904 -227455449 + MLT1J LTR MaLR 72 452 -1 311 309 9 36 chr1 15208908 15209018 -227455335 - MIR SINE MIR -74 188 82 21 0 0 0 chr1 15209026 15209047 -227455306 + AT_rich Low_complexity Low_complexity 1 21 0 228 300 8 46 chr1 15209686 15209816 -227454537 + LTR67 LTR ERVL 424 548 -9 416 314 108 5 chr1 15210706 15210900 -227453453 + MIR SINE MIR 48 261 -1 757 243 10 20 chr1 15211379 15211581 -227452772 - MER20 DNA MER1_type -3 216 17 2153 130 7 3 chr1 15211583 15211883 -227452470 - AluSx SINE Alu -11 301 1 2322 93 3 3 chr1 15212023 15212334 -227452019 + AluY SINE Alu 1 311 0 2695 171 20 22 chr1 15212952 15213292 -227451061 - L1MB7 LINE L1 -16 6168 5828 1974 156 0 10 chr1 15213292 15213587 -227450766 - AluJb SINE Alu -19 293 2 2695 171 20 22 chr1 15213587 15213801 -227450552 - L1MB7 LINE L1 -356 5828 5615 333 179 0 15 chr1 15214812 15214879 -227449474 - MLT1I LTR MaLR -9 400 335 2014 132 30 10 chr1 15214929 15215053 -227449300 + AluJb SINE Alu 3 123 -189 213 39 0 0 chr1 15215053 15215079 -227449274 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2014 132 30 10 chr1 15215079 15215258 -227449095 + AluJb SINE Alu 123 312 0 2481 76 0 22 chr1 15215273 15215590 -227448763 + AluY SINE Alu 1 310 -1 727 270 51 6 chr1 15215864 15216085 -227448268 + MIR SINE MIR 8 238 -24 662 351 52 4 chr1 15216104 15216335 -227448018 - MIR SINE MIR 0 262 21 2416 93 0 0 chr1 15216646 15216956 -227447397 + AluSq SINE Alu 1 310 -3 269 258 124 0 chr1 15217499 15217588 -227446765 - L2 LINE L2 -29 3284 3185 526 246 190 33 chr1 15217996 15218301 -227446052 - L2 LINE L2 -124 3189 2837 2298 140 35 33 chr1 15218745 15219299 -227445054 - MLT2A2 LTR ERVL 0 554 1 198 292 0 56 chr1 15219308 15219331 -227445022 - MIR SINE MIR -92 170 147 511 190 159 82 chr1 15219331 15219526 -227444827 - MER63A DNA MER1_type 0 210 1 198 292 0 56 chr1 15219526 15219574 -227444779 - MIR SINE MIR -115 147 103 895 271 31 31 chr1 15220350 15220605 -227443748 - MIR SINE MIR 0 262 8 299 245 21 53 chr1 15220766 15220860 -227443493 + L2 LINE L2 2570 2660 -654 237 265 96 100 chr1 15220954 15221015 -227443338 + L2 LINE L2 2832 2892 -380 2413 98 0 0 chr1 15221015 15221311 -227443042 - AluSc SINE Alu -13 296 1 237 265 96 100 chr1 15221311 15221509 -227442844 + L2 LINE L2 2892 3090 -182 538 174 18 0 chr1 15221592 15221701 -227442652 - L1MB5 LINE L1 -343 5831 5721 383 257 48 38 chr1 15221743 15221848 -227442505 + L2 LINE L2 3208 3313 0 1694 170 11 0 chr1 15223016 15223286 -227441067 + AluSx SINE Alu 1 273 -39 781 103 8 0 chr1 15223441 15223567 -227440786 + L1MB7 LINE L1 6031 6157 -27 2324 106 3 31 chr1 15223696 15224017 -227440336 + AluSp SINE Alu 2 313 0 235 167 185 0 chr1 15224156 15224210 -227440143 - L2 LINE L2 -5 3267 3204 324 0 0 0 chr1 15224210 15224246 -227440107 + (T)n Simple_repeat Simple_repeat 1 36 0 926 191 35 6 chr1 15225823 15225996 -227438357 + MER45A DNA AcHobo 1 178 0 507 278 99 38 chr1 15226399 15226611 -227437742 - MIR SINE MIR -2 260 36 * 691 271 24 34 chr1 15226564 15226771 -227437582 + MIR SINE MIR 8 212 -50 230 263 137 21 chr1 15226825 15226920 -227437433 - MIR SINE MIR -156 106 1 637 308 68 30 chr1 15227899 15228136 -227436217 - MIR SINE MIR -1 261 16 545 250 0 0 chr1 15228267 15228375 -227435978 - MIR SINE MIR -71 191 84 261 246 14 0 chr1 15228839 15228908 -227435445 + MLT1K LTR MaLR 509 578 -10 2103 134 0 0 chr1 15229240 15229530 -227434823 - AluJb SINE Alu -22 290 1 1504 245 15 18 chr1 15229628 15230024 -227434329 + MLT2C1 LTR ERVL 3 397 0 446 296 132 31 chr1 15230098 15230514 -227433839 + L2 LINE L2 2812 3269 -3 2316 118 0 3 chr1 15231429 15231742 -227432611 - AluSx SINE Alu 0 312 1 538 254 146 11 chr1 15231887 15232072 -227432281 - MIR SINE MIR 0 262 53 182 204 61 41 chr1 15232170 15232219 -227432134 - MIR SINE MIR 0 262 213 519 79 124 56 chr1 15232227 15232316 -227432037 - AluJ/FLAM SINE Alu -216 96 2 2558 62 0 0 chr1 15232660 15232966 -227431387 - AluY SINE Alu -5 306 1 581 271 7 7 chr1 15233394 15233545 -227430808 - MIR SINE MIR -48 214 64 305 297 210 31 chr1 15233577 15233867 -227430486 - L2 LINE L2 -62 3251 2910 318 239 119 18 chr1 15233938 15234047 -227430306 + MIR SINE MIR 143 262 0 620 251 146 55 chr1 15234756 15235271 -227429082 + MLT1H1 LTR MaLR 3 539 -16 1434 187 86 52 chr1 15235430 15235837 -227428516 + MER72 LTR ERV1 1 402 -269 * 3043 108 7 0 chr1 15235836 15236270 -227428083 + MER41B LTR ERV1 19 455 -180 340 296 126 13 chr1 15236305 15236562 -227427791 - L2 LINE L2 -297 3016 2740 200 296 185 22 chr1 15236575 15236710 -227427643 + MIR SINE MIR 10 166 -96 2104 65 47 33 chr1 15236711 15237023 -227427330 + AluY SINE Alu 1 316 0 1583 181 26 42 chr1 15237051 15237360 -227426993 - AluJo SINE Alu -8 304 1 288 301 36 0 chr1 15237360 15237443 -227426910 + MIR SINE MIR 165 250 -12 2411 89 20 0 chr1 15237705 15238007 -227426346 + AluSx SINE Alu 3 310 -2 308 292 86 57 chr1 15238503 15238712 -227425641 + MIR SINE MIR 34 248 -14 250 257 48 38 chr1 15238800 15238905 -227425448 + MIR SINE MIR 106 211 -51 254 266 43 21 chr1 15238953 15239047 -227425306 + L2 LINE L2 3101 3196 -76 1971 142 0 44 chr1 15239222 15239538 -227424815 + AluJo SINE Alu 1 302 -10 293 311 92 0 chr1 15239674 15239793 -227424560 - MIR SINE MIR -77 185 56 1996 129 0 7 chr1 15241527 15241807 -227422546 - AluJo SINE Alu -34 278 1 2298 98 7 3 chr1 15242157 15242464 -227421889 - AluSx SINE Alu -4 308 1 847 304 140 29 chr1 15243489 15244272 -227420081 + L2 LINE L2 2394 3271 -1 2273 101 3 0 chr1 15244353 15244649 -227419704 + AluSq SINE Alu 1 297 -16 434 289 142 26 chr1 15245069 15245301 -227419052 + MER102a DNA MER1_type 61 319 -11 252 286 104 52 chr1 15245567 15245721 -227418632 + MIR SINE MIR 101 262 0 280 362 46 7 chr1 15247101 15247253 -227417100 - MIR SINE MIR 0 262 105 269 302 135 0 chr1 15247312 15247408 -227416945 + L2 LINE L2 3147 3255 -17 690 288 43 23 chr1 15247728 15248027 -227416326 + LTR16C LTR ERVL 187 491 0 878 267 157 5 chr1 15248127 15248509 -227415844 + LTR16B LTR ERVL 25 464 0 1235 192 14 0 chr1 15248713 15248927 -227415426 + MER20 DNA MER1_type 1 217 -2 431 335 85 16 chr1 15249015 15249203 -227415150 + MIR SINE MIR 48 248 -14 619 239 52 143 chr1 15249371 15249798 -227414555 - L2 LINE L2 0 3313 2926 2218 126 3 0 chr1 15249958 15250267 -227414086 + AluSx SINE Alu 1 310 -2 2560 71 0 0 chr1 15251254 15251563 -227412790 - AluY SINE Alu -2 309 1 566 275 94 79 chr1 15252480 15252961 -227411392 - L2 LINE L2 -3 3269 2792 1161 215 0 5 chr1 15252961 15253184 -227411169 + MER58A DNA MER1_type 1 222 -2 566 275 94 79 chr1 15253184 15253202 -227411151 - L2 LINE L2 -480 2792 2776 955 152 0 0 chr1 15253203 15253335 -227411018 - FLAM_C SINE Alu -11 132 1 369 265 109 14 chr1 15253335 15253482 -227410871 - L2 LINE L2 -536 2778 2618 205 310 14 0 chr1 15253612 15253683 -227410670 + MIR SINE MIR 184 255 -7 393 231 68 105 chr1 15253724 15254048 -227410305 - LTR16A1 LTR ERVL 0 457 146 213 207 12 146 chr1 15254159 15254241 -227410112 - MIR3 SINE MIR -23 185 115 1113 52 0 29 chr1 15254449 15254585 -227409768 - AluY SINE Alu -179 132 1 256 309 30 60 chr1 15255882 15256050 -227408303 + MIR3 SINE MIR 1 163 -45 1050 152 13 89 chr1 15256114 15256351 -227408002 + MER20 DNA MER1_type 1 219 0 772 299 69 10 chr1 15257734 15258038 -227406315 + L2 LINE L2 2452 2773 -541 311 212 0 35 chr1 15258064 15258149 -227406204 + MER53 DNA DNA 4 85 -104 243 169 0 62 chr1 15258093 15258158 -227406195 - MER53 DNA DNA -22 167 107 * 1942 130 27 7 chr1 15258299 15258592 -227405761 - AluSp SINE Alu -14 299 1 1074 292 122 11 chr1 15258637 15259089 -227405264 + L2 LINE L2 2812 3313 0 461 282 118 40 chr1 15259277 15259522 -227404831 + MIR SINE MIR 2 256 -6 268 286 44 11 chr1 15260291 15260382 -227403971 + MLT1G LTR MaLR 497 590 0 247 140 16 8 chr1 15260860 15260921 -227403432 + MLT1I LTR MaLR 73 120 -289 280 280 51 28 chr1 15261098 15261219 -227403134 + MLT1G1 LTR MaLR 431 595 0 2226 165 5 30 chr1 15261260 15261570 -227402783 - MLT1B LTR MaLR 0 390 91 2137 106 10 3 chr1 15261570 15261862 -227402491 + AluSp SINE Alu 1 294 -19 2226 165 5 30 chr1 15261862 15261951 -227402402 - MLT1B LTR MaLR -299 91 1 445 290 162 53 chr1 15261951 15262464 -227401889 - MLT1K LTR MaLR -19 569 1 271 350 28 56 chr1 15262563 15262743 -227401610 + MIR SINE MIR 37 211 -51 369 240 163 56 chr1 15262809 15263097 -227401256 + LTR16A LTR ERVL 73 384 -66 796 309 8 27 chr1 15263247 15263503 -227400850 + MIR SINE MIR 2 252 -10 352 327 36 0 chr1 15263510 15263620 -227400733 - L2 LINE L2 -32 3240 3127 286 302 35 26 chr1 15264042 15264158 -227400195 - MIR3 SINE MIR 0 208 92 291 248 65 105 chr1 15264242 15264395 -227399958 + MIR3 SINE MIR 22 168 -40 2647 254 115 34 chr1 15264397 15265803 -227398550 - L2 LINE L2 -12 3301 1789 230 248 0 105 chr1 15265755 15265860 -227398493 + MIR SINE MIR 162 255 -7 * 2115 92 3 0 chr1 15265994 15266319 -227398034 - AluSp SINE Alu 0 326 1 2363 84 0 0 chr1 15266858 15267167 -227397186 - AluY SINE Alu 0 311 3 365 247 99 103 chr1 15267185 15267408 -227396945 - MIR SINE MIR -3 259 38 210 300 0 62 chr1 15267598 15267678 -227396675 + MIR SINE MIR 134 208 -54 485 291 136 10 chr1 15268370 15268569 -227395784 - MIR SINE MIR 0 262 39 417 272 98 54 chr1 15268560 15268744 -227395609 + MIR SINE MIR 21 212 -50 * 40 49 0 0 chr1 15269985 15270046 -227394307 + AT_rich Low_complexity Low_complexity 1 61 0 405 0 0 0 chr1 15270078 15270123 -227394230 + (TA)n Simple_repeat Simple_repeat 1 45 0 315 313 20 60 chr1 15270178 15270328 -227394025 + MIR SINE MIR 35 178 -84 315 239 109 0 chr1 15270730 15270822 -227393531 - MIR SINE MIR -112 150 49 185 231 0 0 chr1 15270833 15270872 -227393481 - L2 LINE L2 -15 3257 3219 220 296 136 27 chr1 15271002 15271296 -227393057 + L2 LINE L2 2805 3130 -183 183 200 12 150 chr1 15271404 15271484 -227392869 + L2 LINE L2 3196 3264 -49 437 189 47 28 chr1 15271709 15271815 -227392538 - MLT1K LTR MaLR -144 444 337 718 247 37 16 chr1 15271847 15272037 -227392316 + MLT1K LTR MaLR 107 300 -288 195 238 63 48 chr1 15272133 15272196 -227392157 + L2 LINE L2 3122 3185 -87 701 269 25 49 chr1 15272427 15272672 -227391681 + MLT1K LTR MaLR 12 250 -338 2196 92 0 0 chr1 15272931 15273223 -227391130 + AluSq SINE Alu 1 292 -21 2588 109 18 90 chr1 15274330 15274712 -227389641 + MSTB LTR MaLR 2 347 -79 1695 151 44 0 chr1 15274712 15274984 -227389369 + AluJb SINE Alu 1 284 -28 2588 109 18 90 chr1 15274984 15275058 -227389295 + MSTB LTR MaLR 347 425 -1 260 284 84 32 chr1 15275515 15275610 -227388743 + MIR SINE MIR 42 141 -121 279 0 0 0 chr1 15276364 15276395 -227387958 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4833 40 0 3 chr1 15276395 15276968 -227387385 - L1PA4 LINE L1 -18 6137 5567 326 295 58 26 chr1 15278039 15278195 -227386158 - MER117 DNA MER1_type -31 166 6 2172 111 0 0 chr1 15278272 15278579 -227385774 + AluSx SINE Alu 1 307 -5 182 246 49 16 chr1 15279418 15279479 -227384874 + MER5A DNA MER1_type 4 66 -123 2151 105 0 3 chr1 15280137 15280432 -227383921 + AluSx SINE Alu 1 294 -18 477 246 51 34 chr1 15280518 15280636 -227383717 + L2 LINE L2 3148 3267 -5 884 187 14 51 chr1 15280807 15281021 -227383332 + MER3 DNA MER1_type 4 209 0 271 314 51 63 chr1 15281070 15281245 -227383108 + MIR SINE MIR 48 220 -42 188 210 111 62 chr1 15281741 15281822 -227382531 + MIR SINE MIR 91 175 -87 1006 226 122 23 chr1 15281901 15282209 -227382144 - MLT1A1 LTR MaLR -8 356 19 2595 228 57 5 chr1 15282434 15283067 -227381286 - L1MB7 LINE L1 -9 6175 5510 454 179 143 43 chr1 15285103 15285243 -227379110 + MLT1K LTR MaLR 419 572 -16 353 243 117 9 chr1 15285757 15285868 -227378485 + MIR3 SINE MIR 34 156 -52 2026 121 17 0 chr1 15285917 15286215 -227378138 - AluSx SINE Alu -9 303 1 382 301 176 19 chr1 15286380 15286596 -227377757 + MIR SINE MIR 11 260 -2 182 245 38 19 chr1 15286736 15286789 -227377564 + MIR SINE MIR 95 148 -60 32 0 0 0 chr1 15286878 15286910 -227377443 + AT_rich Low_complexity Low_complexity 1 32 0 336 102 0 0 chr1 15287630 15287679 -227376674 + (T)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr1 15288041 15288062 -227376291 + AT_rich Low_complexity Low_complexity 1 21 0 805 145 0 0 chr1 15288062 15288179 -227376174 - FLAM_C SINE Alu -16 117 1 804 321 4 17 chr1 15288675 15288912 -227375441 + MIR SINE MIR 14 247 -15 1241 217 51 65 chr1 15288915 15289329 -227375024 - MLT1I LTR MaLR 0 409 2 2337 26 0 0 chr1 15289882 15290155 -227374198 - L1PA4 LINE L1 -1 6154 5882 204 260 41 0 chr1 15292450 15292523 -227371830 + CT-rich Low_complexity Low_complexity 4 79 0 346 261 63 18 chr1 15292988 15293099 -227371254 + MIR SINE MIR 69 184 -78 420 311 16 0 chr1 15293300 15293422 -227370931 + MIR3 SINE MIR 36 159 -49 209 263 18 35 chr1 15293818 15293875 -227370478 + MIR SINE MIR 27 82 -180 1838 92 8 0 chr1 15293880 15294130 -227370223 + AluSx SINE Alu 48 299 -13 379 271 10 0 chr1 15294130 15294226 -227370127 + MIR SINE MIR 153 249 -13 204 125 0 0 chr1 15294231 15294263 -227370090 + (ATG)n Simple_repeat Simple_repeat 1 32 0 284 235 25 12 chr1 15294264 15294345 -227370008 + GA-rich Low_complexity Low_complexity 1 82 0 2224 92 3 7 chr1 15295156 15295460 -227368893 + AluSq SINE Alu 2 304 -9 677 213 41 24 chr1 15296516 15296685 -227367668 - HERVL74 LTR ERVL -4115 1570 1399 209 97 0 0 chr1 15296704 15296735 -227367618 + L2 LINE L2 3283 3313 0 267 31 0 0 chr1 15297100 15297132 -227367221 + (TG)n Simple_repeat Simple_repeat 2 33 0 610 304 0 0 chr1 15297326 15297494 -227366859 + MER117 DNA MER1_type 1 168 -29 225 362 24 16 chr1 15298736 15298863 -227365490 - MIR SINE MIR -63 145 18 2217 116 42 33 chr1 15299074 15299435 -227364918 + THE1B LTR MaLR 1 364 0 1886 160 67 81 chr1 15301104 15301329 -227363024 - MER66B LTR ERV1 0 486 259 2166 99 0 0 chr1 15301329 15301622 -227362731 - AluSg SINE Alu -11 299 7 1886 160 67 81 chr1 15301622 15301889 -227362464 - MER66B LTR ERV1 -227 259 1 283 116 0 5 chr1 15302309 15302364 -227361989 - Alu SINE Alu -262 40 1 211 323 16 0 chr1 15302365 15302427 -227361926 - MIR SINE MIR -84 178 116 329 289 221 14 chr1 15302577 15302785 -227361568 + MIR SINE MIR 1 251 -11 292 256 13 26 chr1 15303128 15303206 -227361147 + L2 LINE L2 3150 3226 -46 213 94 0 0 chr1 15303226 15303258 -227361095 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1830 160 72 19 chr1 15303404 15303779 -227360574 - L1MB7 LINE L1 -5 6179 5785 2147 205 29 86 chr1 15303790 15304419 -227359934 - L1MB7 LINE L1 -1539 4607 4016 459 0 0 0 chr1 15304419 15304470 -227359883 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2147 205 29 86 chr1 15304470 15304503 -227359850 - L1MB7 LINE L1 -2130 4016 3983 1923 227 38 33 chr1 15304484 15305093 -227359260 - L1MB7 LINE L1 -2537 3609 2998 * 397 281 38 19 chr1 15305204 15305364 -227358989 + MER103 DNA DNA 2 164 -2 655 189 106 76 chr1 15305390 15305654 -227358699 + ORSL DNA AcHobo 1 272 -3 481 128 39 39 chr1 15307000 15307179 -227357174 + (CA)n Simple_repeat Simple_repeat 2 180 0 735 283 139 28 chr1 15307227 15307651 -227356702 + L2 LINE L2 2842 3312 -1 324 292 118 17 chr1 15308435 15308613 -227355740 - L2 LINE L2 0 3313 3118 199 154 77 0 chr1 15310367 15310406 -227353947 + L2 LINE L2 3261 3302 -11 289 102 34 17 chr1 15310834 15310893 -227353460 + CT-rich Low_complexity Low_complexity 3 62 0 225 114 0 0 chr1 15311898 15311933 -227352420 - MIR SINE MIR -117 145 111 286 165 10 155 chr1 15311938 15311970 -227352383 - Charlie8 DNA MER1_type -176 165 130 1500 153 67 8 chr1 15311970 15312238 -227352115 + AluSx SINE Alu 1 284 -28 286 165 10 155 chr1 15312238 15312302 -227352051 - Charlie8 DNA MER1_type -211 130 83 188 188 16 0 chr1 15512479 15512543 -227151810 + G-rich Low_complexity Low_complexity 5 69 0 182 170 0 21 chr1 15512914 15512961 -227151392 + G-rich Low_complexity Low_complexity 2 47 0 198 118 0 0 chr1 15513093 15513127 -227151226 + (T)n Simple_repeat Simple_repeat 1 34 0 839 124 39 0 chr1 15513197 15513326 -227151027 - AluSq/x SINE Alu -179 134 1 2528 63 0 22 chr1 15513354 15513669 -227150684 + AluY SINE Alu 1 308 -3 435 182 83 21 chr1 15513754 15513889 -227150464 - MIR3 SINE MIR -48 160 23 2250 71 46 0 chr1 15514142 15514425 -227149928 + AluSg SINE Alu 1 296 -14 2320 54 4 11 chr1 15514537 15514815 -227149538 - AluY SINE Alu -35 276 1 452 264 40 13 chr1 15514818 15514991 -227149362 - L1M4 LINE L1 -1548 4598 4412 418 266 22 14 chr1 15515080 15515219 -227149134 + MIR SINE MIR 5 144 -118 350 120 0 0 chr1 15515233 15515283 -227149070 + MER3 DNA MER1_type 41 90 -119 * 372 64 0 0 chr1 15515240 15515287 -227149066 - Charlie5 DNA MER1_type -2403 209 163 934 265 42 0 chr1 15515627 15515865 -227148488 + MIR SINE MIR 7 254 -8 235 189 0 0 chr1 15515928 15515979 -227148374 - MIR SINE MIR -116 92 42 673 173 0 31 chr1 15516037 15516164 -227148189 + FLAM_C SINE Alu 2 124 -9 2469 77 10 0 chr1 15516244 15516542 -227147811 + AluSc SINE Alu 1 301 -8 2280 118 0 0 chr1 15516574 15516870 -227147483 + AluSq SINE Alu 1 296 -17 503 231 9 0 chr1 15517221 15517329 -227147024 + MER58A DNA MER1_type 37 145 0 1618 170 35 38 chr1 15517330 15517619 -227146734 - AluJb SINE Alu -24 288 1 382 211 0 0 chr1 15517670 15517741 -227146612 + MER58A DNA MER1_type 151 221 -3 921 276 176 52 chr1 15517875 15518052 -227146301 - L2 LINE L2 -9 3263 3109 2427 96 0 3 chr1 15518052 15518366 -227145987 + AluSq SINE Alu 1 313 0 921 276 176 52 chr1 15518366 15518662 -227145691 - L2 LINE L2 -163 3109 2851 1878 139 38 0 chr1 15518662 15518949 -227145404 - AluJb SINE Alu -14 298 1 921 276 176 52 chr1 15518949 15519277 -227145076 - L2 LINE L2 -421 2851 2565 2010 148 7 13 chr1 15519277 15519587 -227144766 + AluSx SINE Alu 1 308 -4 921 276 176 52 chr1 15519587 15519652 -227144701 - L2 LINE L2 -707 2565 2258 1256 149 10 5 chr1 15520396 15520591 -227143762 - AluJb SINE Alu -116 196 1 2333 109 3 0 chr1 15520709 15521013 -227143340 - AluSp SINE Alu -8 305 1 2118 137 0 10 chr1 15521018 15521325 -227143028 - AluSx SINE Alu -8 304 1 412 162 0 0 chr1 15521547 15521615 -227142738 + AluSg/x SINE Alu 208 275 -37 606 129 0 20 chr1 15521767 15521868 -227142485 - AluSx SINE Alu -8 304 206 2407 91 3 0 chr1 15521868 15522164 -227142189 - AluSc SINE Alu -8 301 5 1542 140 0 0 chr1 15522167 15522381 -227141972 - AluSx SINE Alu -98 214 1 1280 139 42 28 chr1 15522489 15522704 -227141649 - AluJo SINE Alu -10 302 85 189 308 169 41 chr1 15522716 15522888 -227141465 - L2 LINE L2 -1686 1628 1435 548 145 0 0 chr1 15522942 15523025 -227141328 + AluJ/FLAM SINE Alu 2 84 -228 1767 168 24 7 chr1 15523124 15523421 -227140932 - AluJo SINE Alu -6 306 5 2101 122 7 10 chr1 15523520 15523815 -227140538 - AluSx SINE Alu -18 294 1 2411 87 0 19 chr1 15524400 15524709 -227139644 + AluSq SINE Alu 1 303 -10 2282 79 7 20 chr1 15525361 15525664 -227138689 + AluSc SINE Alu 1 299 -10 293 304 179 0 chr1 15526132 15526244 -227138109 + MIR SINE MIR 16 147 -61 309 133 33 0 chr1 15526287 15526347 -227138006 - AluSp/q SINE Alu 0 303 242 2235 93 0 0 chr1 15526395 15526673 -227137680 + AluSx SINE Alu 35 312 0 2150 133 0 3 chr1 15526674 15526967 -227137386 + AluSg SINE Alu 1 292 -18 2292 101 3 0 chr1 15526969 15527267 -227137086 + AluSg SINE Alu 3 301 -9 499 176 38 114 chr1 15527268 15527361 -227136992 - MER58 DNA MER1_type -147 194 124 2080 123 7 42 chr1 15527361 15527528 -227136825 - AluSx SINE Alu -10 302 149 2611 57 0 0 chr1 15527528 15527827 -227136526 - AluY SINE Alu -12 299 1 2080 123 7 42 chr1 15527827 15527967 -227136386 - AluSx SINE Alu -163 149 6 499 176 38 114 chr1 15527967 15528083 -227136270 - MER58 DNA MER1_type -217 124 1 2165 96 7 7 chr1 15528118 15528409 -227135944 - AluSc SINE Alu -18 291 1 934 160 65 45 chr1 15528433 15528633 -227135720 - AluJo SINE Alu -5 307 104 358 264 57 19 chr1 15528635 15528741 -227135612 + AluSg/x SINE Alu 135 244 -56 1068 191 36 27 chr1 15528773 15528993 -227135360 + AluJo SINE Alu 85 306 -6 426 73 0 0 chr1 15529116 15529171 -227135182 - AluJo/FRAM SINE Alu -47 265 211 294 170 0 0 chr1 15529171 15529224 -227135129 + Alu SINE Alu 245 297 -4 244 282 164 9 chr1 15529225 15529335 -227135018 + MIR SINE MIR 20 146 -62 2562 60 0 10 chr1 15529616 15529914 -227134439 + AluSx SINE Alu 1 295 -17 227 327 39 32 chr1 15529994 15530150 -227134203 + L2 LINE L2 2881 3037 -276 2558 64 0 0 chr1 15530431 15530729 -227133624 - AluY SINE Alu -13 298 1 326 289 11 11 chr1 15530784 15530874 -227133479 - L3 LINE CR1 -9 1568 1479 1990 162 0 0 chr1 15530875 15531171 -227133182 - AluJb SINE Alu -16 296 1 232 286 268 0 chr1 15531580 15531692 -227132661 - MIR SINE MIR -89 173 32 1493 174 98 21 chr1 15531739 15532026 -227132327 + AluJo SINE Alu 1 309 -3 2446 106 0 0 chr1 15532076 15532388 -227131965 + AluSx SINE Alu 1 312 0 2070 136 0 7 chr1 15532900 15533201 -227131152 + AluSx SINE Alu 1 299 -13 955 104 0 0 chr1 15533335 15533460 -227130893 + AluSc SINE Alu 170 294 -15 1865 160 0 0 chr1 15533488 15533795 -227130558 - AluJb SINE Alu 0 312 1 902 96 80 0 chr1 15533869 15533994 -227130359 + AluSq/x SINE Alu 1 135 -178 192 77 0 0 chr1 15534090 15534116 -227130237 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1222 153 213 24 chr1 15534416 15534686 -227129667 + AluSx SINE Alu 1 312 0 2444 78 0 13 chr1 15534741 15535048 -227129305 + AluY SINE Alu 1 303 -8 360 182 192 30 chr1 15535055 15535154 -227129199 - FLAM_C SINE Alu -18 115 1 2201 121 10 0 chr1 15535179 15535469 -227128884 + AluSx SINE Alu 1 293 -19 359 217 217 39 chr1 15535524 15535653 -227128700 - L2 LINE L2 -1 3312 3161 2096 110 28 7 chr1 15535703 15535993 -227128360 + AluSx SINE Alu 3 298 -14 1845 156 28 3 chr1 15536101 15536389 -227127964 - AluJo SINE Alu -17 295 1 462 289 170 0 chr1 15536395 15536554 -227127799 + MER5A DNA MER1_type 4 189 0 2140 98 7 36 chr1 15536586 15536891 -227127462 + AluSq SINE Alu 1 296 -17 1834 190 68 29 chr1 15537393 15537835 -227126518 - LTR2B LTR ERV1 0 490 32 1930 148 0 33 chr1 15537880 15538184 -227126169 + AluJb SINE Alu 1 294 -18 304 131 16 0 chr1 15538185 15538246 -227126107 + L1MB7 LINE L1 6123 6184 0 2269 117 3 0 chr1 15538267 15538565 -227125788 + AluSx SINE Alu 2 300 -12 244 258 16 0 chr1 15538624 15538686 -227125667 - L2 LINE L2 0 3272 3210 362 253 268 20 chr1 15538728 15539120 -227125233 + L2 LINE L2 819 1307 -2007 225 259 121 9 chr1 15539923 15540039 -227124314 + MIR3 SINE MIR 33 161 -47 195 290 43 11 chr1 15540257 15540350 -227124003 + L2 LINE L2 2956 3051 -221 231 114 0 0 chr1 15540474 15540509 -227123844 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 2462 85 3 0 chr1 15540943 15541249 -227123104 - AluSp SINE Alu -6 307 1 2525 66 7 0 chr1 15541253 15541558 -227122795 - AluSp SINE Alu -6 307 1 1148 68 0 0 chr1 15541562 15541695 -227122658 - AluSq/x SINE Alu -179 133 1 220 267 139 0 chr1 15541741 15541827 -227122526 - MIR SINE MIR -78 130 33 2404 84 3 3 chr1 15542309 15542606 -227121747 + AluSc SINE Alu 1 297 -12 2521 67 0 0 chr1 15542607 15542907 -227121446 + AluY SINE Alu 1 300 -11 816 198 0 6 chr1 15542907 15543069 -227121284 - L1MD3 LINE L1 -110 7885 7725 212 326 22 11 chr1 15543244 15543336 -227121017 + MIR SINE MIR 111 203 -59 799 152 8 0 chr1 15543640 15543772 -227120581 - FLAM_C SINE Alu 0 133 1 209 195 24 0 chr1 15543819 15543860 -227120493 + C-rich Low_complexity Low_complexity 2 43 0 791 152 71 63 chr1 15544010 15544132 -227120221 - LTR37A LTR ERV1 -12 414 294 2352 94 0 17 chr1 15544132 15544429 -227119924 + AluSx SINE Alu 1 292 -20 791 152 71 63 chr1 15544429 15544682 -227119671 - LTR37A LTR ERV1 -132 294 1 871 135 0 0 chr1 15544860 15544993 -227119360 + FLAM_C SINE Alu 1 133 0 1920 158 3 14 chr1 15545013 15545310 -227119043 + AluJb SINE Alu 1 294 -18 219 268 116 14 chr1 15545473 15545611 -227118742 + MIR SINE MIR 80 231 -31 1101 160 0 66 chr1 15546073 15546247 -227118106 - AluSg/x SINE Alu 0 302 144 2547 65 13 7 chr1 15546247 15546557 -227117796 - AluSp SINE Alu -1 312 1 1101 160 0 66 chr1 15546557 15546614 -227117739 - AluSg/x SINE Alu -158 144 85 2466 72 0 57 chr1 15547263 15547594 -227116759 - AluSx SINE Alu 0 312 1 594 143 87 0 chr1 15547993 15548119 -227116234 - L1MB3 LINE L1 -3 6180 6044 1327 129 4 71 chr1 15548119 15548271 -227116082 - AluSg/x SINE Alu -28 282 121 189 0 0 0 chr1 15548271 15548292 -227116061 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2411 57 0 0 chr1 15548292 15548574 -227115779 - AluY SINE Alu -29 282 1 1327 129 4 71 chr1 15548574 15548645 -227115708 - AluSg/x SINE Alu -187 123 73 1692 138 127 0 chr1 15548653 15548921 -227115432 - AluJb SINE Alu -10 302 1 1933 152 28 33 chr1 15548921 15549052 -227115301 - L1MB3 LINE L1 -121 6062 5932 474 305 13 63 chr1 15549052 15549157 -227115196 - L1PA16 LINE L1 -241 5925 5816 2288 123 0 0 chr1 15549157 15549458 -227114895 - AluSg SINE Alu -9 301 1 2342 86 0 26 chr1 15549458 15549762 -227114591 - AluSx SINE Alu -14 298 3 474 305 13 63 chr1 15549762 15549957 -227114396 - L1PA16 LINE L1 -348 5818 5639 335 289 48 0 chr1 15550271 15550354 -227113999 - L1MC4 LINE L1 -1340 6702 6616 311 360 0 0 chr1 15550308 15550397 -227113956 + L1MC4 LINE L1 6614 6702 -1340 * 304 296 34 11 chr1 15550334 15550422 -227113931 - L1MCa LINE L1 -4359 2067 1978 * 2387 100 3 0 chr1 15550432 15550741 -227113612 - AluSp SINE Alu -3 310 1 649 237 149 14 chr1 15550888 15551103 -227113250 + MER90 LTR ERV1 370 613 -1 873 129 0 0 chr1 15551249 15551365 -227112988 + AluJo/FLAM SINE Alu 1 116 -196 1999 144 0 0 chr1 15551365 15551670 -227112683 - AluSq SINE Alu 0 305 1 2339 101 0 7 chr1 15551672 15551969 -227112384 - AluSc SINE Alu -14 295 1 225 0 0 0 chr1 15551989 15552014 -227112339 + (TA)n Simple_repeat Simple_repeat 1 25 0 2389 108 0 0 chr1 15552014 15552321 -227112032 - AluSg SINE Alu -3 307 1 204 320 136 0 chr1 15552347 15552450 -227111903 - MIR SINE MIR -72 136 20 1802 146 30 0 chr1 15552559 15552826 -227111527 - AluJb SINE Alu -14 298 24 1928 137 35 0 chr1 15552843 15553127 -227111226 - AluSx SINE Alu -17 295 2 2394 92 0 0 chr1 15554332 15554625 -227109728 - AluSx SINE Alu -19 293 1 2309 93 17 3 chr1 15554635 15554926 -227109427 - AluSq SINE Alu -18 295 1 2001 137 23 0 chr1 15555774 15556074 -227108279 - AluSx SINE Alu -5 307 1 2528 63 0 22 chr1 15556102 15556417 -227107936 + AluY SINE Alu 1 308 -3 435 182 83 21 chr1 15556502 15556637 -227107716 - MIR3 SINE MIR -48 160 23 1765 137 42 3 chr1 15556890 15557174 -227107179 + AluSg1 SINE Alu 1 295 -14 1243 140 0 0 chr1 15557560 15557731 -227106622 - AluJb SINE Alu -13 299 129 1238 133 0 0 chr1 15557839 15558005 -227106348 - AluJb SINE Alu -13 299 134 1891 150 21 7 chr1 15558005 15558291 -227106062 - AluJb SINE Alu -22 290 1 567 198 0 138 chr1 15558806 15558883 -227105470 - MER45A DNA AcHobo -1403 178 92 2017 134 17 3 chr1 15558883 15559174 -227105179 + AluSx SINE Alu 1 295 -17 567 198 0 138 chr1 15559174 15559187 -227105166 - MER45A DNA AcHobo -1489 92 79 1624 158 28 54 chr1 15559187 15559504 -227104849 + AluJo SINE Alu 1 309 -3 567 198 0 138 chr1 15559504 15559579 -227104774 - MER45A DNA AcHobo -1502 79 35 2212 125 6 10 chr1 15559775 15560086 -227104267 + AluSx SINE Alu 1 310 -2 2277 95 7 3 chr1 15560142 15560436 -227103917 + AluSx SINE Alu 1 295 -17 2377 109 0 3 chr1 15560437 15560741 -227103612 + AluSp SINE Alu 2 304 -9 252 314 71 35 chr1 15560749 15560918 -227103435 + L2 LINE L2 2897 3071 -201 910 155 7 0 chr1 15560953 15561095 -227103258 - FLAM_C SINE Alu 0 143 1 671 266 102 71 chr1 15561243 15561505 -227102848 + MLT1K LTR MaLR 180 458 -130 2334 90 10 0 chr1 15561505 15561805 -227102548 + AluSq SINE Alu 1 303 -10 671 266 102 71 chr1 15561805 15561906 -227102447 + MLT1K LTR MaLR 458 554 -34 2370 88 3 34 chr1 15562475 15562795 -227101558 - AluSg SINE Alu 0 310 1 236 255 0 98 chr1 15562818 15562920 -227101433 + L2 LINE L2 3132 3223 -49 195 326 106 64 chr1 15562937 15563078 -227101275 + MIR SINE MIR 18 164 -98 631 123 36 72 chr1 15563104 15563242 -227101111 - FLAM_C SINE Alu 0 133 1 1225 167 100 154 chr1 15563256 15563823 -227100530 + MER21A LTR ERV1 16 612 -251 2233 114 0 0 chr1 15563823 15564122 -227100231 - AluSg SINE Alu -10 300 2 2566 39 0 13 chr1 15564131 15564441 -227099912 - AluY SINE Alu -5 306 1 1225 167 100 154 chr1 15564441 15564477 -227099876 + MER21A LTR ERV1 454 490 -373 1833 141 33 7 chr1 15565213 15565517 -227098836 - AluSx SINE Alu 0 312 1 259 115 0 49 chr1 15565640 15565677 -227098676 - L1MB1 LINE L1 -1 6167 6130 2311 86 3 3 chr1 15565677 15565979 -227098374 - AluSp SINE Alu -9 304 3 1867 106 84 0 chr1 15565981 15566254 -227098099 - AluSx SINE Alu -16 296 1 259 115 0 49 chr1 15566254 15566274 -227098079 - L1MB1 LINE L1 -39 6129 6110 1413 113 0 5 chr1 15566293 15566497 -227097856 + AluSq SINE Alu 2 204 -109 21 36 0 0 chr1 15566548 15566576 -227097777 + AT_rich Low_complexity Low_complexity 1 28 0 837 136 0 0 chr1 15566588 15566706 -227097647 - FLAM_C SINE Alu -25 118 1 258 317 246 7 chr1 15567181 15567323 -227097030 - MER5A DNA MER1_type 0 189 14 545 249 53 62 chr1 15567471 15567555 -227096798 + MIR SINE MIR 11 94 -168 1468 209 127 45 chr1 15567555 15567832 -227096521 + MLT1D LTR MaLR 1 254 -251 2066 141 3 0 chr1 15567832 15568138 -227096215 + AluSx SINE Alu 1 307 -5 2245 98 0 22 chr1 15568140 15568456 -227095897 + AluSg SINE Alu 1 309 -1 1468 209 127 45 chr1 15568456 15568639 -227095714 + MLT1D LTR MaLR 254 502 -3 545 249 53 62 chr1 15568639 15568779 -227095574 + MIR SINE MIR 94 233 -29 2073 144 0 6 chr1 15569131 15569444 -227094909 + AluSx SINE Alu 1 311 -1 2240 89 7 0 chr1 15569445 15569747 -227094606 + AluSc SINE Alu 1 304 -5 343 177 0 6 chr1 15569787 15569856 -227094497 - Alu SINE Alu -247 55 1 2322 106 0 0 chr1 15569872 15570183 -227094170 - AluSx SINE Alu -1 311 1 227 314 23 0 chr1 15570932 15571018 -227093335 - MIR SINE MIR -108 154 67 1948 138 7 3 chr1 15571195 15571499 -227092854 + AluSx SINE Alu 1 305 -7 245 316 72 36 chr1 15571512 15571651 -227092702 + L3b LINE CR1 1342 1485 -98 319 239 0 0 chr1 15572117 15572184 -227092169 + MIR SINE MIR 46 112 -96 1853 156 0 10 chr1 15572185 15572486 -227091867 + AluJo SINE Alu 1 298 -14 2124 109 7 0 chr1 15572486 15572778 -227091575 + AluSp SINE Alu 1 295 -18 2198 98 0 0 chr1 15572781 15573067 -227091286 + AluSx SINE Alu 1 286 -26 258 32 0 0 chr1 15573070 15573101 -227091252 + (CA)n Simple_repeat Simple_repeat 2 32 0 874 158 72 0 chr1 15573101 15573211 -227091142 + AluJb SINE Alu 132 257 -55 198 0 0 0 chr1 15573211 15573233 -227091120 + (CACTG)n Simple_repeat Simple_repeat 1 22 0 874 158 72 0 chr1 15573233 15573274 -227091079 + AluJb SINE Alu 257 294 -18 329 284 53 0 chr1 15573274 15573369 -227090984 + MER5A DNA MER1_type 66 165 -24 464 279 96 21 chr1 15575033 15575226 -227089127 - MIR SINE MIR -53 209 3 2241 96 3 3 chr1 15575439 15575742 -227088611 + AluSq SINE Alu 1 303 -10 1892 103 28 21 chr1 15576127 15576247 -227088106 + AluSx SINE Alu 10 128 -184 2155 122 0 0 chr1 15576247 15576551 -227087802 + AluSg1 SINE Alu 1 304 -5 1892 103 28 21 chr1 15576551 15576720 -227087633 + AluSx SINE Alu 128 301 -11 327 322 39 50 chr1 15577290 15577470 -227086883 - MIR SINE MIR -3 259 82 2314 101 0 0 chr1 15578252 15578560 -227085793 - AluSx SINE Alu -4 308 1 2298 70 13 0 chr1 15578565 15578866 -227085487 - AluSx SINE Alu -7 305 1 291 305 121 0 chr1 15579016 15579157 -227085196 + MIR SINE MIR 35 192 -70 22 0 0 0 chr1 15579961 15579983 -227084370 + GC_rich Low_complexity Low_complexity 1 22 0 205 286 0 0 chr1 15580025 15580088 -227084265 + C-rich Low_complexity Low_complexity 81 143 0 25 0 0 0 chr1 15580177 15580202 -227084151 + GC_rich Low_complexity Low_complexity 1 25 0 299 165 66 44 chr1 15580257 15580348 -227084005 + G-rich Low_complexity Low_complexity 2 94 0 440 274 114 17 chr1 15580521 15580696 -227083657 + MIR SINE MIR 63 254 -8 278 313 93 63 chr1 15581354 15581530 -227082823 - MIR SINE MIR -49 213 35 479 302 124 48 chr1 15582455 15582826 -227081527 - L2 LINE L2 -5 3308 2910 362 241 118 52 chr1 15583000 15583230 -227081123 + MIR3 SINE MIR 5 243 -19 327 172 65 11 chr1 15583557 15583650 -227080703 + MLT1K LTR MaLR 388 485 -103 318 188 29 0 chr1 15583684 15583753 -227080600 - Alu SINE Alu 0 301 231 2437 70 0 16 chr1 15583759 15584104 -227080249 - AluY SINE Alu 0 340 1 2297 100 0 0 chr1 15584193 15584492 -227079861 + AluSq SINE Alu 1 299 -14 1158 99 12 0 chr1 15584499 15584660 -227079693 + AluSg/x SINE Alu 140 302 -8 2040 111 0 0 chr1 15585477 15585756 -227078597 + AluSx SINE Alu 1 279 -33 1835 145 0 17 chr1 15585848 15586028 -227078325 - AluJb SINE Alu 0 313 139 2166 70 0 0 chr1 15586028 15586298 -227078055 - AluY SINE Alu -7 304 35 1835 145 0 17 chr1 15586298 15586435 -227077918 - AluJb SINE Alu -174 139 1 266 340 89 29 chr1 15586439 15586754 -227077599 + L2 LINE L2 2642 2975 -339 329 340 0 0 chr1 15586773 15586870 -227077483 + L2 LINE L2 2660 2756 -558 942 112 0 0 chr1 15586937 15587071 -227077282 - AluSg/x SINE Alu -6 303 170 1565 102 0 0 chr1 15587086 15587302 -227077051 - AluSg1 SINE Alu -93 216 1 373 289 40 13 chr1 15587310 15587459 -227076894 + L2 LINE L2 2898 3050 -263 364 234 133 8 chr1 15587459 15587587 -227076766 + MLT1E LTR MaLR 2 145 -448 587 240 67 17 chr1 15587721 15587900 -227076453 + MLT1E LTR MaLR 406 593 0 2342 87 3 0 chr1 15587949 15588259 -227076094 - AluSx SINE Alu -1 311 1 247 306 35 0 chr1 15588300 15588385 -227075968 + L2 LINE L2 3185 3272 0 786 276 86 16 chr1 15589733 15589976 -227074377 + MIR SINE MIR 3 262 0 277 276 82 20 chr1 15589981 15590079 -227074274 - MIR SINE MIR -87 121 17 2182 122 0 3 chr1 15590485 15590797 -227073556 - AluSx SINE Alu -1 311 1 1012 167 0 0 chr1 15591501 15591663 -227072690 - AluSg/x SINE Alu -15 295 134 361 297 103 11 chr1 15592195 15592370 -227071983 + L2 LINE L2 2454 2644 -670 537 98 24 0 chr1 15592370 15592452 -227071901 - Alu SINE Alu -3 306 223 1085 123 0 7 chr1 15592452 15592606 -227071747 - AluSq SINE Alu -160 153 1 868 98 76 0 chr1 15592641 15592773 -227071580 + AluSg/x SINE Alu 166 307 -5 822 108 0 0 chr1 15592783 15592894 -227071459 + AluJ SINE Alu 1 111 -201 2244 99 20 3 chr1 15592894 15593197 -227071156 - AluSq SINE Alu -5 308 1 414 100 0 0 chr1 15593202 15593262 -227071091 + (TC)n Simple_repeat Simple_repeat 2 61 0 1829 166 16 0 chr1 15593262 15593569 -227070784 - AluSx SINE Alu 0 312 1 1200 172 15 0 chr1 15593570 15593773 -227070580 + AluJ SINE Alu 107 312 0 428 347 10 20 chr1 15593864 15594063 -227070290 + L2 LINE L2 2849 3045 -227 2158 89 0 35 chr1 15594823 15595136 -227069217 - AluSx SINE Alu -10 302 1 478 247 148 25 chr1 15595203 15595365 -227068988 + MIR SINE MIR 47 228 -34 252 136 0 85 chr1 15596326 15596385 -227067968 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 2282 95 0 3 chr1 15596581 15596885 -227067468 + AluSg SINE Alu 1 303 -7 2073 105 18 0 chr1 15597825 15598111 -227066242 + AluSg SINE Alu 1 291 -19 1963 161 8 28 chr1 15598111 15598230 -227066123 + MLT1B LTR MaLR 1 121 -269 2233 117 0 0 chr1 15598230 15598529 -227065824 + AluSx SINE Alu 1 299 -13 1963 161 8 28 chr1 15598529 15598799 -227065554 + MLT1B LTR MaLR 121 382 -8 465 331 62 0 chr1 15598907 15599085 -227065268 + MIR SINE MIR 17 205 -57 482 255 186 16 chr1 15599735 15599923 -227064430 + MIR SINE MIR 29 248 -14 285 118 0 0 chr1 15599975 15600026 -227064327 + (TG)n Simple_repeat Simple_repeat 2 52 0 257 180 0 20 chr1 15601069 15601119 -227063234 + MIR SINE MIR 83 131 -131 2208 121 0 3 chr1 15601208 15601521 -227062832 - AluSx SINE Alu 0 312 1 493 231 118 35 chr1 15602974 15603177 -227061176 + MIR SINE MIR 21 240 -22 2277 90 0 3 chr1 15608348 15608649 -227055704 - AluSx SINE Alu -12 300 1 306 0 0 0 chr1 15608727 15608761 -227055592 + (CCCCG)n Simple_repeat Simple_repeat 5 38 0 1366 217 96 9 chr1 15612757 15613089 -227051264 + MLT1A1 LTR MaLR 5 365 0 2370 80 0 0 chr1 15614303 15614605 -227049748 - AluSc SINE Alu -7 302 1 2091 104 0 17 chr1 15615038 15615337 -227049016 - AluJo SINE Alu -5 307 14 2164 92 3 3 chr1 15616364 15616680 -227047673 + AluSx SINE Alu 1 316 0 215 31 31 0 chr1 15618647 15618679 -227045674 + (TA)n Simple_repeat Simple_repeat 2 34 0 2167 103 3 7 chr1 15619338 15619640 -227044713 - AluSx SINE Alu -11 301 1 835 219 22 0 chr1 15621368 15621546 -227042807 - FRAM SINE Alu 0 176 1 1608 172 11 0 chr1 15621552 15621837 -227042516 - AluJo SINE Alu -24 288 1 2228 102 3 6 chr1 15623135 15623448 -227040905 - AluSx SINE Alu 0 312 1 715 157 0 0 chr1 15623450 15623552 -227040801 - AluJb SINE Alu -22 290 189 189 0 0 0 chr1 15624438 15624459 -227039894 + (T)n Simple_repeat Simple_repeat 1 21 0 209 206 44 59 chr1 15624485 15624553 -227039800 - MIR3 SINE MIR -2 206 140 2101 114 3 3 chr1 15624568 15624866 -227039487 + AluSg SINE Alu 1 298 -12 2240 68 0 14 chr1 15624869 15625194 -227039159 + AluY SINE Alu 1 321 0 219 167 0 0 chr1 15625508 15625550 -227038803 + A-rich Low_complexity Low_complexity 1 42 0 1535 120 20 149 chr1 15625555 15625707 -227038646 + AluJo SINE Alu 2 87 -215 1940 110 0 0 chr1 15625707 15625970 -227038383 + AluSx SINE Alu 1 263 -49 1535 120 20 149 chr1 15625970 15626159 -227038194 + AluJo SINE Alu 87 299 -3 341 355 138 0 chr1 15626229 15626460 -227037893 - L1MC/D LINE L1 -2010 5798 5536 * 409 265 113 59 chr1 15626451 15626666 -227037687 - L1P5 LINE L1 -641 5515 5284 2394 79 3 0 chr1 15626666 15626971 -227037382 - AluSp SINE Alu -7 306 1 409 265 113 59 chr1 15626971 15626993 -227037360 - L1P5 LINE L1 -872 5284 5265 384 306 120 29 chr1 15627049 15627165 -227037188 - L1MC/D LINE L1 -940 5206 5102 2010 142 0 3 chr1 15627165 15627474 -227036879 - AluSx SINE Alu -4 308 1 384 306 120 29 chr1 15627474 15627566 -227036787 - L1MC/D LINE L1 -1044 5102 4979 1034 147 95 171 chr1 15627588 15627915 -227036438 - AluSx SINE Alu 0 302 1 367 261 0 0 chr1 15627956 15628025 -227036328 - FRAM/FAM SINE Alu -106 60 1 2023 87 37 20 chr1 15628181 15628480 -227035873 + AluSx SINE Alu 1 304 -8 371 186 5 0 chr1 15628480 15628563 -227035790 + Alu SINE Alu 1 51 -250 391 217 0 0 chr1 15628663 15628732 -227035621 - AluJ/FLAM SINE Alu -233 69 1 393 211 0 0 chr1 15628783 15628854 -227035499 + MER58 DNA MER1_type 2347 2417 -3 244 218 60 32 chr1 15628988 15629118 -227035235 - L2 LINE L2 -9 3263 3100 1944 137 6 13 chr1 15629165 15629478 -227034875 + AluSx SINE Alu 1 311 -1 390 316 34 0 chr1 15629646 15629763 -227034590 + MER5B DNA MER1_type 58 178 0 295 296 31 0 chr1 15629767 15629865 -227034488 - L2 LINE L2 -1235 2079 1979 423 206 161 50 chr1 15629978 15630196 -227034157 + L1MC5 LINE L1 7547 7788 -173 240 143 0 0 chr1 15630310 15630352 -227034001 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 213 288 50 12 chr1 15630352 15630432 -227033921 - L2 LINE L2 -1490 1824 1742 1809 147 3 32 chr1 15631617 15631929 -227032424 + AluJo SINE Alu 1 303 -9 2188 116 0 7 chr1 15631929 15632231 -227032122 + AluSx SINE Alu 1 300 -12 2331 69 0 7 chr1 15632836 15633139 -227031214 - AluY SINE Alu -10 301 1 2299 97 0 3 chr1 15633188 15633497 -227030856 - AluSq SINE Alu -5 308 1 2181 84 10 7 chr1 15633517 15633815 -227030538 - AluSq SINE Alu -14 299 1 212 308 31 15 chr1 15634128 15634193 -227030160 - MIR3 SINE MIR -45 163 98 320 146 0 8 chr1 15634341 15634409 -227029944 + Alu SINE Alu 247 302 0 1360 141 0 107 chr1 15634630 15634920 -227029433 - AluJo SINE Alu -4 308 50 21 0 0 0 chr1 15634945 15634966 -227029387 + AT_rich Low_complexity Low_complexity 1 21 0 3778 47 0 43 chr1 15634975 15635488 -227028865 + L1PA6 LINE L1 5676 6167 0 858 129 0 0 chr1 15635488 15635604 -227028749 - FLAM_C SINE Alu -17 116 1 2153 122 6 3 chr1 15635798 15636109 -227028244 + AluSx SINE Alu 1 312 0 1792 157 20 3 chr1 15636142 15636448 -227027905 + AluJo SINE Alu 1 311 -1 952 133 176 37 chr1 15636791 15636979 -227027374 + AluJo SINE Alu 83 296 -16 499 273 15 0 chr1 15637864 15637996 -227026357 + L2 LINE L2 3167 3300 -13 2407 74 0 3 chr1 15637998 15638307 -227026046 + AluSq SINE Alu 3 310 -3 288 304 121 67 chr1 15638414 15638537 -227025816 + MIR SINE MIR 13 128 -134 1748 141 3 40 chr1 15638537 15638836 -227025517 + AluJb SINE Alu 5 292 -20 1949 97 38 14 chr1 15638842 15639131 -227025222 + AluSq SINE Alu 1 296 -17 288 304 121 67 chr1 15639131 15639224 -227025129 + MIR SINE MIR 132 248 -14 2173 125 0 0 chr1 15639588 15639899 -227024454 + AluSx SINE Alu 1 311 -1 2061 101 11 0 chr1 15640256 15640574 -227023779 - AluSg SINE Alu 0 321 1 2193 105 0 0 chr1 15641307 15641603 -227022750 + AluSx SINE Alu 3 298 -14 2057 119 10 0 chr1 15641607 15641900 -227022453 + AluSq SINE Alu 1 296 -17 732 197 7 0 chr1 15641913 15642050 -227022303 + FLAM_C SINE Alu 5 142 -1 1810 133 3 43 chr1 15642515 15642815 -227021538 - AluJo SINE Alu -20 292 5 1844 162 3 10 chr1 15643274 15643582 -227020771 + AluJo SINE Alu 1 306 -6 558 266 100 30 chr1 15643627 15643898 -227020455 + L2 LINE L2 3024 3313 0 756 195 167 0 chr1 15644073 15644247 -227020106 + MER58A DNA MER1_type 10 212 -12 1924 125 40 0 chr1 15644289 15644586 -227019767 + AluSx SINE Alu 1 309 -3 2229 99 3 0 chr1 15644590 15644892 -227019461 + AluSq SINE Alu 1 303 -10 2271 91 13 0 chr1 15645372 15645679 -227018674 - AluSp SINE Alu -2 311 1 2150 112 7 0 chr1 15645973 15646276 -227018077 - AluSx SINE Alu -7 305 1 804 243 32 0 chr1 15646481 15646670 -227017683 + L1ME3A LINE L1 5971 6165 -5 2265 63 0 26 chr1 15647189 15647491 -227016862 + AluY SINE Alu 18 311 0 279 102 0 20 chr1 15647507 15647556 -227016797 + AluSp SINE Alu 86 133 -170 2082 106 0 26 chr1 15647558 15647697 -227016656 + AluSx SINE Alu 1 142 -170 2280 73 0 7 chr1 15647697 15647997 -227016356 + AluY SINE Alu 2 299 -12 2082 106 0 26 chr1 15647997 15648182 -227016171 + AluSx SINE Alu 142 312 0 646 226 20 7 chr1 15648197 15648343 -227016010 - MIR SINE MIR -107 155 8 285 146 0 0 chr1 15649055 15649103 -227015250 + (T)n Simple_repeat Simple_repeat 1 48 0 29 0 0 0 chr1 15649225 15649254 -227015099 + AT_rich Low_complexity Low_complexity 1 29 0 28 105 0 0 chr1 15649884 15649989 -227014364 + GC_rich Low_complexity Low_complexity 1 105 0 338 107 18 0 chr1 15650088 15650144 -227014209 + (CCG)n Simple_repeat Simple_repeat 3 59 0 45 111 0 0 chr1 15650146 15650345 -227014008 + GC_rich Low_complexity Low_complexity 1 199 0 974 145 0 13 chr1 15651982 15652177 -227012176 - AluSg/x SINE Alu 0 310 132 1921 85 0 8 chr1 15652177 15652435 -227011918 - AluSx SINE Alu -13 299 44 1481 166 46 14 chr1 15652439 15652722 -227011631 - AluJo SINE Alu -20 292 1 575 246 0 36 chr1 15653527 15653665 -227010688 + FLAM_A SINE Alu 1 133 0 2024 132 0 7 chr1 15653906 15654216 -227010137 - AluSg SINE Alu -2 308 1 549 136 0 0 chr1 15654218 15654299 -227010054 - AluSg/x SINE Alu -21 289 209 277 267 114 42 chr1 15654304 15654493 -227009860 + L2 LINE L2 2756 2955 -317 1331 163 113 25 chr1 15654493 15654776 -227009577 + AluSg SINE Alu 1 308 -2 364 331 47 21 chr1 15654813 15655086 -227009267 + MLT1J2 LTR MaLR 53 364 -86 647 131 0 20 chr1 15655220 15655319 -227009034 + AluS SINE Alu 3 99 -213 2474 139 22 63 chr1 15655376 15655427 -227008926 + MSTA LTR MaLR 1 53 -375 2119 107 13 0 chr1 15655427 15655735 -227008618 + AluSx SINE Alu 1 312 0 2474 139 22 63 chr1 15655735 15656077 -227008276 + MSTA LTR MaLR 53 376 -52 2166 111 0 0 chr1 15656077 15656374 -227007979 + AluSx SINE Alu 3 299 -13 2474 139 22 63 chr1 15656374 15656425 -227007928 + MSTA LTR MaLR 376 428 0 1609 196 0 28 chr1 15656579 15656896 -227007457 + AluJo SINE Alu 1 308 -4 712 292 60 39 chr1 15657126 15657155 -227007198 - L2 LINE L2 0 3313 3286 3648 143 36 0 chr1 15657155 15657713 -227006640 - LTR19B LTR ERV1 0 580 3 712 292 60 39 chr1 15657713 15657967 -227006386 - L2 LINE L2 -27 3286 3024 783 168 23 0 chr1 15658076 15658207 -227006146 + FRAM SINE Alu 10 143 -33 29 70 0 0 chr1 15658218 15658275 -227006078 + AT_rich Low_complexity Low_complexity 1 57 0 824 251 136 8 chr1 15658301 15658648 -227005705 - L2 LINE L2 -287 3026 2633 1212 106 0 0 chr1 15658648 15658827 -227005526 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 1024 123 6 6 chr1 15658839 15659018 -227005335 + (TAGG)n Simple_repeat Simple_repeat 1 179 0 662 224 155 26 chr1 15659020 15659190 -227005163 - L2 LINE L2 -652 2662 2515 2130 114 0 7 chr1 15659190 15659496 -227004857 - AluSq SINE Alu -9 304 1 662 224 155 26 chr1 15659496 15659589 -227004764 - L2 LINE L2 -799 2515 2365 3501 115 22 51 chr1 15659898 15660051 -227004302 + HSMAR2 DNA Mariner 9 165 -1137 1932 99 88 3 chr1 15660051 15660335 -227004018 + AluSc SINE Alu 1 308 -1 3501 115 22 51 chr1 15660335 15660516 -227003837 + HSMAR2 DNA Mariner 165 350 -952 1357 166 64 42 chr1 15660516 15660644 -227003709 + AluJb SINE Alu 1 125 -187 2200 100 3 0 chr1 15660644 15660935 -227003418 + AluSp SINE Alu 1 292 -21 1357 166 64 42 chr1 15660935 15661089 -227003264 + AluJb SINE Alu 125 289 -23 3501 115 22 51 chr1 15661089 15661379 -227002974 + HSMAR2 DNA Mariner 350 616 -686 1301 146 29 38 chr1 15661379 15661462 -227002891 + AluSx SINE Alu 58 140 -172 2118 105 10 7 chr1 15661462 15661767 -227002586 + AluSq SINE Alu 1 306 -7 1301 146 29 38 chr1 15661767 15661922 -227002431 + AluSx SINE Alu 140 294 -18 2024 120 0 0 chr1 15661945 15662241 -227002112 - AluSg SINE Alu -14 296 5 1066 82 0 0 chr1 15662241 15662376 -227001977 - AluSq/x SINE Alu -178 135 1 848 148 6 41 chr1 15662376 15662545 -227001808 - FRAM SINE Alu -13 163 1 2244 101 0 0 chr1 15663113 15663409 -227000944 + AluSg SINE Alu 1 296 -14 2096 112 14 0 chr1 15663921 15664217 -227000136 - AluSc SINE Alu -9 300 1 735 235 175 17 chr1 15664561 15664795 -226999558 + MLT1J1 LTR MaLR 61 331 -115 969 216 129 4 chr1 15664870 15665102 -226999251 - MIR SINE MIR 0 262 2 1455 152 76 4 chr1 15665114 15665377 -226998976 - AluSg SINE Alu -28 282 1 2062 103 14 0 chr1 15667426 15667716 -226996637 - AluSg SINE Alu -16 294 1 486 238 82 0 chr1 15667892 15668014 -226996339 + L2 LINE L2 3140 3271 -1 23 0 0 0 chr1 15668905 15668928 -226995425 + AT_rich Low_complexity Low_complexity 1 23 0 2276 93 0 0 chr1 15669364 15669665 -226994688 - AluSq SINE Alu -12 301 1 1480 103 0 19 chr1 15670193 15670407 -226993946 - AluSg/x SINE Alu -12 298 89 456 157 157 0 chr1 15670480 15670569 -226993784 + FLAM_A SINE Alu 23 125 -17 1968 123 0 41 chr1 15674663 15674762 -226989591 - AluSx SINE Alu -8 304 202 2253 91 3 0 chr1 15674762 15675058 -226989295 - AluSc SINE Alu -8 301 5 1968 123 0 41 chr1 15675058 15675275 -226989078 - AluSx SINE Alu -110 202 1 334 128 0 0 chr1 15675337 15675384 -226988969 + AluS SINE Alu 38 84 -219 1612 168 24 7 chr1 15675483 15675780 -226988573 - AluJo SINE Alu -6 306 5 2042 104 10 0 chr1 15675879 15676168 -226988185 - AluSg SINE Alu -18 292 1 2237 93 7 0 chr1 15676181 15676481 -226987872 - AluSp SINE Alu -11 302 1 840 125 7 15 chr1 15676481 15676617 -226987736 - AluSq/x SINE Alu -177 135 1 1481 219 88 77 chr1 15676625 15677159 -226987194 + L2 LINE L2 2002 2541 -773 1512 107 119 11 chr1 15677159 15677420 -226986933 + AluSg SINE Alu 5 293 -17 801 134 112 15 chr1 15677420 15677578 -226986775 + AluSc SINE Alu 132 302 0 2229 97 10 0 chr1 15677580 15677889 -226986464 + AluSx SINE Alu 1 312 0 1219 121 0 0 chr1 15678441 15678614 -226985739 + AluSg/x SINE Alu 119 291 -19 296 252 69 46 chr1 15678661 15678733 -226985620 + L2 LINE L2 2587 2665 -649 2056 74 3 14 chr1 15678733 15679018 -226985335 - AluY SINE Alu -8 303 22 296 252 69 46 chr1 15679018 15679076 -226985277 + L2 LINE L2 2665 2720 -594 841 127 73 27 chr1 15679182 15679332 -226985021 - AluJb SINE Alu -22 290 134 1554 180 14 0 chr1 15679333 15679627 -226984726 - AluJo SINE Alu -14 298 1 944 269 72 67 chr1 15679632 15679805 -226984548 + L2 LINE L2 2865 3036 -277 718 250 12 0 chr1 15679805 15679965 -226984388 + FRAM SINE Alu 4 165 -1 944 269 72 67 chr1 15679965 15680238 -226984115 + L2 LINE L2 3036 3313 0 1863 115 30 7 chr1 15680442 15680737 -226983616 - AluSg SINE Alu -8 302 1 2411 46 3 16 chr1 15681106 15681413 -226982940 - AluY SINE Alu -8 303 1 2164 77 17 3 chr1 15681902 15682201 -226982152 - AluSp SINE Alu -10 303 1 2052 44 4 25 chr1 15682309 15682583 -226981770 - AluY SINE Alu -43 268 1 548 167 139 0 chr1 15682870 15682978 -226981375 + FLAM_C SINE Alu 1 123 -10 1653 92 141 4 chr1 15682995 15683257 -226981096 + AluSc SINE Alu 2 299 0 737 187 107 7 chr1 15683265 15683415 -226980938 + FRAM SINE Alu 1 165 -1 21 82 0 0 chr1 15684613 15684662 -226979691 + GC_rich Low_complexity Low_complexity 1 49 0 2181 71 17 3 chr1 15686171 15686467 -226977886 - AluSq SINE Alu -13 300 1 630 171 9 0 chr1 15686484 15686595 -226977758 - FLAM_C SINE Alu -30 113 2 1318 159 101 8 chr1 15687656 15687935 -226976418 - AluJo SINE Alu 0 303 1 1890 118 10 0 chr1 15688119 15688416 -226975937 + AluSq SINE Alu 1 300 -13 721 201 81 0 chr1 15688579 15688728 -226975625 + FRAM SINE Alu 1 161 -5 1808 139 4 0 chr1 15688878 15689158 -226975195 - AluSp SINE Alu -7 306 26 6554 129 70 19 chr1 15689258 15690335 -226974018 + Tigger4(Zombi) DNA MER2_type 579 1710 -1021 1770 146 29 0 chr1 15690363 15690671 -226973682 + Tigger4(Zombi) DNA MER2_type 1853 2169 -562 673 363 59 52 chr1 15691776 15692200 -226972153 + MER115 DNA AcHobo 8 434 -259 317 347 139 17 chr1 15692227 15692643 -226971710 - L2 LINE L2 -182 3131 2667 307 217 14 0 chr1 15692658 15692727 -226971626 - MLT1I LTR MaLR -6 403 334 3303 226 4 11 chr1 15692827 15693576 -226970777 - L1P LINE L1 -996 5150 4407 191 111 0 28 chr1 15693636 15693672 -226970681 + (TTC)n Simple_repeat Simple_repeat 3 37 0 1272 216 82 7 chr1 15693706 15693988 -226970365 + MLT1F LTR MaLR 231 533 -9 834 145 0 0 chr1 15694538 15694669 -226969684 - AluSc SINE Alu -169 140 10 724 213 39 45 chr1 15694670 15694825 -226969528 + AluJb SINE Alu 107 260 -52 25 51 0 0 chr1 15694828 15694867 -226969486 + AT_rich Low_complexity Low_complexity 1 39 0 2290 82 0 0 chr1 15694869 15695161 -226969192 + AluSx SINE Alu 1 292 -20 1952 144 0 7 chr1 15695161 15695459 -226968894 + AluJb SINE Alu 1 296 -16 230 264 33 22 chr1 15695477 15695568 -226968785 + L1MC5 LINE L1 7818 7909 -52 281 216 34 11 chr1 15695570 15695658 -226968695 - Charlie4 DNA MER1_type -132 1829 1740 1206 125 0 0 chr1 15695658 15695826 -226968527 + AluSq SINE Alu 1 168 -145 1191 169 62 21 chr1 15695926 15696168 -226968185 - AluJb SINE Alu -59 253 2 1669 105 112 4 chr1 15696207 15696474 -226967879 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 15696785 15696807 -226967546 + AT_rich Low_complexity Low_complexity 1 22 0 1572 97 0 22 chr1 15696810 15696947 -226967406 + AluSx SINE Alu 1 133 -179 2012 121 0 7 chr1 15696947 15697245 -226967108 + AluSg SINE Alu 1 296 -14 1572 97 0 22 chr1 15697245 15697333 -226967020 + AluSx SINE Alu 133 221 -91 590 108 16 78 chr1 15697436 15697565 -226966788 + L1MB3 LINE L1 5859 5979 -204 1921 136 3 3 chr1 15697565 15697866 -226966487 - AluSx SINE Alu -11 301 1 25 0 0 0 chr1 15697868 15697893 -226966460 + AT_rich Low_complexity Low_complexity 1 25 0 850 110 44 0 chr1 15698005 15698141 -226966212 - FRAM SINE Alu -9 167 26 730 213 23 111 chr1 15698172 15698388 -226965965 - AluJo SINE Alu -105 207 11 2033 107 3 7 chr1 15698458 15698749 -226965604 - AluSx SINE Alu -21 291 2 1996 118 3 10 chr1 15698818 15699123 -226965230 - AluSx SINE Alu -9 303 1 662 154 19 0 chr1 15699272 15699376 -226964977 - AluSg/x SINE Alu -14 295 190 2231 74 0 0 chr1 15699743 15700050 -226964303 - AluY SINE Alu 0 307 1 778 99 0 18 chr1 15700508 15700605 -226963748 + AluSc SINE Alu 193 289 -20 822 147 0 0 chr1 15700605 15700721 -226963632 - AluJo/FLAM SINE Alu -185 117 2 778 99 0 18 chr1 15700721 15700734 -226963619 + AluSc SINE Alu 289 301 -8 277 197 45 0 chr1 15700754 15700820 -226963533 - L1MC4 LINE L1 -58 7984 7916 420 315 8 0 chr1 15700829 15700956 -226963397 - L1MC4 LINE L1 -174 7868 7741 780 178 16 0 chr1 15700958 15701087 -226963266 + Tigger3(Golem) DNA MER2_type 2898 3028 -1 1393 193 3 29 chr1 15701122 15701433 -226962920 + AluJb SINE Alu 1 303 -9 973 190 0 11 chr1 15701611 15701785 -226962568 - FAM SINE Alu 0 175 4 2428 47 0 37 chr1 15701816 15702137 -226962216 - AluY SINE Alu -2 309 1 2578 43 0 0 chr1 15702374 15702678 -226961675 - AluY SINE Alu -6 305 2 690 189 16 24 chr1 15702714 15702841 -226961512 - AluJb SINE Alu -19 293 168 433 65 0 86 chr1 15702847 15702940 -226961413 + (TG)n Simple_repeat Simple_repeat 1 85 0 649 173 0 0 chr1 15702940 15703044 -226961309 - FLAM_C SINE Alu -23 120 17 2047 97 7 3 chr1 15703078 15703366 -226960987 - AluSc SINE Alu -18 291 3 207 0 0 0 chr1 15703368 15703391 -226960962 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1111 151 10 44 chr1 15703392 15703597 -226960756 - AluSg/x SINE Alu -29 281 84 2033 119 7 3 chr1 15703603 15703898 -226960455 - AluSg SINE Alu -14 296 1 21 0 0 0 chr1 15703975 15703996 -226960357 + AT_rich Low_complexity Low_complexity 1 21 0 490 196 21 10 chr1 15704127 15704224 -226960129 - FLAM_C SINE Alu -24 119 22 2272 97 0 7 chr1 15704228 15704537 -226959816 + AluSg SINE Alu 1 307 -3 253 67 0 0 chr1 15705201 15705231 -226959122 + Alu SINE Alu 11 40 -261 2218 99 0 0 chr1 15705235 15705529 -226958824 - AluY SINE Alu -17 294 1 822 202 30 0 chr1 15705562 15705730 -226958623 + AluJb SINE Alu 127 299 -13 1847 175 0 0 chr1 15706027 15706330 -226958023 + AluJb SINE Alu 1 303 -9 609 153 96 113 chr1 15706340 15706517 -226957836 + L1MB3 LINE L1 5695 5868 -315 792 182 0 0 chr1 15706620 15706752 -226957601 - FLAM_C SINE Alu 0 133 2 551 144 21 0 chr1 15706754 15706851 -226957502 - L1M4 LINE L1 -394 5784 5686 259 146 0 0 chr1 15706851 15706899 -226957454 - AluJb SINE Alu -4 298 251 953 164 5 35 chr1 15706906 15707107 -226957246 - L1M4 LINE L1 -638 5546 5352 1524 183 4 0 chr1 15707120 15707388 -226956965 - AluJb SINE Alu -43 269 1 41 21 0 0 chr1 15707393 15707441 -226956912 + AT_rich Low_complexity Low_complexity 1 48 0 634 215 8 0 chr1 15707441 15707562 -226956791 - FLAM_C SINE Alu -11 122 1 273 211 0 0 chr1 15707604 15707656 -226956697 - L1M4 LINE L1 -891 5255 5204 2482 51 0 0 chr1 15707694 15707989 -226956364 - AluY SINE Alu -16 295 1 25 0 0 0 chr1 15708294 15708319 -226956034 + AT_rich Low_complexity Low_complexity 1 25 0 1833 123 7 7 chr1 15708319 15708611 -226955742 - AluSq SINE Alu -21 292 1 580 177 100 23 chr1 15708836 15709001 -226955352 - AluJb SINE Alu 0 317 143 2106 101 0 10 chr1 15709128 15709425 -226954928 - AluSx SINE Alu -18 294 1 197 258 76 15 chr1 15710174 15710240 -226954113 + L2 LINE L2 3199 3268 -45 289 152 212 0 chr1 15710240 15710306 -226954047 - AluSg/x SINE Alu -7 293 214 252 0 0 0 chr1 15710425 15710453 -226953900 + (A)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chr1 15710495 15710523 -226953830 + AT_rich Low_complexity Low_complexity 1 28 0 2179 105 0 3 chr1 15710599 15710903 -226953450 + AluSq SINE Alu 1 303 -10 2326 101 7 3 chr1 15710903 15711209 -226953144 + AluSp SINE Alu 1 307 -6 2267 98 0 10 chr1 15711411 15711708 -226952645 + AluSx SINE Alu 1 294 -18 210 135 39 58 chr1 15712334 15712386 -226951967 + (CCCG)n Simple_repeat Simple_repeat 1 51 0 324 83 0 0 chr1 15712513 15712561 -226951792 + (CCG)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr1 15712945 15712969 -226951384 + GC_rich Low_complexity Low_complexity 1 24 0 32 0 0 0 chr1 15715684 15715716 -226948637 + AT_rich Low_complexity Low_complexity 1 32 0 2115 122 3 3 chr1 15716282 15716577 -226947776 + AluSg SINE Alu 1 295 -15 27 29 0 0 chr1 15717052 15717086 -226947267 + AT_rich Low_complexity Low_complexity 1 34 0 1393 159 35 13 chr1 15717499 15717731 -226946622 - AluJb SINE Alu -75 237 1 2103 133 13 0 chr1 15717757 15718065 -226946288 - AluSx SINE Alu 0 312 1 2246 110 0 13 chr1 15718067 15718240 -226946113 - AluSx SINE Alu -6 306 137 2198 105 7 16 chr1 15718240 15718544 -226945809 - AluSg SINE Alu -9 301 1 2246 110 0 13 chr1 15718544 15718680 -226945673 - AluSx SINE Alu -175 137 1 2271 88 24 0 chr1 15719065 15719360 -226944993 - AluSp SINE Alu -11 302 1 457 69 0 0 chr1 15720217 15720275 -226944078 + AluSc SINE Alu 76 133 -176 2345 87 0 26 chr1 15720275 15720584 -226943769 + AluY SINE Alu 1 301 -10 27 0 0 0 chr1 15723442 15723469 -226940884 + AT_rich Low_complexity Low_complexity 1 27 0 1788 160 18 0 chr1 15725248 15725530 -226938823 - AluSx SINE Alu -25 287 1 2193 134 0 0 chr1 15725703 15726009 -226938344 - AluSq SINE Alu -7 306 1 2207 97 26 19 chr1 15726691 15726999 -226937354 + AluSx SINE Alu 3 312 0 1601 137 8 17 chr1 15727021 15727262 -226937091 + AluSq SINE Alu 1 239 -74 2529 61 0 0 chr1 15727640 15727934 -226936419 - AluY SINE Alu -17 294 1 2315 89 10 7 chr1 15728418 15728721 -226935632 - AluSx SINE Alu -8 304 1 1510 152 83 25 chr1 15728952 15729229 -226935124 - AluJo SINE Alu -15 297 5 2157 130 0 0 chr1 15730344 15730636 -226933717 + AluSg SINE Alu 1 292 -18 1123 153 6 0 chr1 15731387 15731557 -226932796 - AluSg/x SINE Alu -13 297 127 2470 75 0 3 chr1 15731769 15732074 -226932279 - AluY SINE Alu -7 304 1 1776 154 29 16 chr1 15732688 15732994 -226931359 - AluSx SINE Alu -2 310 1 316 87 0 0 chr1 15733166 15733212 -226931141 - Alu SINE Alu -3 297 252 1722 153 25 4 chr1 15734955 15735236 -226929117 - AluJo SINE Alu -25 287 1 2476 57 0 47 chr1 15735240 15735558 -226928795 - AluY SINE Alu -8 303 1 249 133 44 0 chr1 15735655 15735700 -226928653 + Alu SINE Alu 270 316 -4 2029 109 3 24 chr1 15735706 15735999 -226928354 + AluSx SINE Alu 4 290 -22 953 123 0 0 chr1 15736061 15736199 -226928154 - AluSg/x SINE Alu -1 311 174 2263 118 0 10 chr1 15736274 15736587 -226927766 - AluSx SINE Alu -2 310 1 2194 107 10 0 chr1 15736602 15736893 -226927460 - AluSp SINE Alu -19 294 1 2160 140 0 6 chr1 15737114 15737429 -226926924 - AluSq SINE Alu 0 313 1 2195 109 0 20 chr1 15737674 15737978 -226926375 - AluSx SINE Alu -14 298 1 1960 84 0 0 chr1 15738256 15738493 -226925860 - AluSg SINE Alu -73 237 1 473 119 95 0 chr1 15738522 15738606 -226925747 - AluSg/x SINE Alu -8 304 213 1489 184 57 3 chr1 15738608 15738907 -226925446 - L1MB8 LINE L1 -38 6140 5826 456 100 0 0 chr1 15738915 15738975 -226925378 - Charlie5 DNA MER1_type -2546 66 7 1535 167 27 38 chr1 15739162 15739316 -226925037 - AluJo SINE Alu -20 292 141 2488 61 3 0 chr1 15739316 15739613 -226924740 - AluY SINE Alu -13 298 1 1535 167 27 38 chr1 15739613 15739751 -226924602 - AluJo SINE Alu -171 141 3 598 109 85 73 chr1 15739886 15739976 -226924377 + Charlie5 DNA MER1_type 2418 2512 -73 2419 77 0 13 chr1 15739976 15740287 -226924066 - AluY SINE Alu -4 307 1 598 109 85 73 chr1 15740287 15740361 -226923992 + Charlie5 DNA MER1_type 2512 2584 -1 26 0 0 0 chr1 15740746 15740772 -226923581 + AT_rich Low_complexity Low_complexity 1 26 0 2221 102 3 0 chr1 15740780 15741088 -226923265 + AluSq SINE Alu 1 309 0 400 111 0 0 chr1 15741652 15741715 -226922638 + FAM SINE Alu 115 177 -2 1730 135 12 12 chr1 15741726 15741985 -226922368 + AluSx SINE Alu 9 267 -45 2248 84 20 0 chr1 15742500 15742796 -226921557 - AluSc SINE Alu -7 302 1 1652 143 121 44 chr1 15742841 15742883 -226921470 - L1MB3 LINE L1 0 6183 6146 2379 79 3 0 chr1 15742883 15743175 -226921178 - AluSp SINE Alu -10 303 11 1652 143 121 44 chr1 15743175 15743497 -226920856 - L1MB3 LINE L1 -37 6146 5791 2216 112 3 13 chr1 15743642 15743947 -226920406 - AluSx SINE Alu -10 302 1 2222 117 7 0 chr1 15744151 15744459 -226919894 - AluSx SINE Alu -2 310 1 1271 178 0 5 chr1 15744731 15744944 -226919409 + AluJo SINE Alu 84 295 -17 2167 104 3 17 chr1 15745160 15745319 -226919034 - AluSx SINE Alu -19 293 138 2190 105 10 7 chr1 15745319 15745625 -226918728 - AluSp SINE Alu -6 307 1 2167 104 3 17 chr1 15745625 15745762 -226918591 - AluSx SINE Alu -174 138 1 333 0 0 0 chr1 15746137 15746174 -226918179 + (TG)n Simple_repeat Simple_repeat 2 38 0 3802 137 72 25 chr1 15746174 15746511 -226917842 - L1MB3 LINE L1 -27 6156 5837 2298 111 0 9 chr1 15746511 15746826 -226917527 - AluSx SINE Alu 0 312 1 3802 137 72 25 chr1 15746826 15747125 -226917228 - L1MB3 LINE L1 -346 5837 5482 1892 148 0 28 chr1 15747125 15747442 -226916911 - AluJb SINE Alu -3 309 2 3802 137 72 25 chr1 15747442 15747496 -226916857 - L1MB3 LINE L1 -701 5482 5432 497 198 74 0 chr1 15747501 15747622 -226916731 - FLAM_A SINE Alu 0 142 13 677 128 83 0 chr1 15747625 15747786 -226916567 - L1MB3 LINE L1 -727 5439 5268 1943 135 7 0 chr1 15747795 15748109 -226916244 - AluSx SINE Alu 0 316 1 536 161 204 36 chr1 15748734 15748871 -226915482 - MER20 DNA MER1_type 0 219 60 1027 196 147 23 chr1 15749033 15749298 -226915055 + AluJb SINE Alu 2 299 -3 26 0 0 0 chr1 15749298 15749324 -226915029 + AT_rich Low_complexity Low_complexity 1 26 0 1675 162 19 42 chr1 15749324 15749633 -226914720 + AluSx SINE Alu 1 302 -10 691 202 309 9 chr1 15749720 15749892 -226914461 - Charlie1 DNA MER1_type -6 2755 2636 2234 120 7 0 chr1 15749892 15750192 -226914161 - AluSx SINE Alu -10 302 1 691 202 309 9 chr1 15750192 15750336 -226914017 - Charlie1 DNA MER1_type -125 2636 2344 247 286 79 0 chr1 15750338 15750401 -226913952 - Charlie1 DNA MER1_type -2693 68 1 863 135 15 8 chr1 15750493 15750626 -226913727 + AluJo SINE Alu 1 134 -178 1264 171 60 0 chr1 15751391 15751608 -226912745 - AluJb SINE Alu -51 261 32 585 136 82 27 chr1 15751638 15751748 -226912605 - FLAM_A SINE Alu -17 116 1 25 0 0 0 chr1 15751985 15752010 -226912343 + AT_rich Low_complexity Low_complexity 1 25 0 1996 99 92 0 chr1 15752159 15752441 -226911912 + AluSq SINE Alu 1 308 -5 606 121 0 0 chr1 15752630 15752713 -226911640 - AluS SINE Alu -227 86 4 2137 140 3 0 chr1 15752843 15753151 -226911202 - AluSq SINE Alu -4 309 1 2356 112 0 0 chr1 15753172 15753485 -226910868 - AluSq SINE Alu 0 313 1 2360 90 0 7 chr1 15753537 15753836 -226910517 - AluSc SINE Alu -12 297 1 2046 137 6 16 chr1 15754412 15754726 -226909627 - AluSx SINE Alu 0 312 2 1764 150 36 20 chr1 15754729 15755035 -226909318 - AluJo SINE Alu -1 311 1 2112 121 21 0 chr1 15755163 15755453 -226908900 + AluSx SINE Alu 1 296 -16 180 111 0 0 chr1 15756173 15756200 -226908153 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 787 168 0 0 chr1 15756202 15756327 -226908026 - FLAM_C SINE Alu -8 125 1 198 246 109 55 chr1 15756334 15756379 -226907974 - MIR SINE MIR -13 249 208 2044 112 24 10 chr1 15756379 15756673 -226907680 - AluSc SINE Alu -7 302 5 198 246 109 55 chr1 15756673 15756737 -226907616 - MIR SINE MIR -54 208 134 195 329 59 0 chr1 15756871 15756956 -226907397 - MIR SINE MIR -147 115 26 2706 42 3 0 chr1 15757807 15758115 -226906238 + AluY SINE Alu 1 309 -2 520 178 30 0 chr1 15758860 15758961 -226905392 + U13 snRNA snRNA 1 104 0 2378 110 0 0 chr1 15759642 15759951 -226904402 + AluSx SINE Alu 1 309 -3 247 232 14 29 chr1 15760194 15760263 -226904090 + MER5A DNA MER1_type 38 105 -84 207 0 0 0 chr1 15761414 15761437 -226902916 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 876 197 0 20 chr1 15761437 15761589 -226902764 - AluJb SINE Alu -30 282 134 976 215 142 11 chr1 15761589 15761850 -226902503 + AluSg1 SINE Alu 15 309 0 2349 110 0 3 chr1 15762504 15762812 -226901541 + AluSq SINE Alu 1 307 -6 1512 179 82 0 chr1 15763192 15763460 -226900893 + AluJb SINE Alu 1 290 -22 1787 169 0 22 chr1 15763489 15763802 -226900551 - AluJb SINE Alu -6 306 1 1429 161 0 9 chr1 15764462 15764692 -226899661 - AluJb SINE Alu 0 312 85 1914 150 3 7 chr1 15764808 15765102 -226899251 + AluJb SINE Alu 1 293 -19 2221 106 3 3 chr1 15765358 15765651 -226898702 - AluSq SINE Alu -18 295 3 189 0 0 0 chr1 15766105 15766126 -226898227 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2063 138 27 0 chr1 15766184 15766482 -226897871 - AluSq SINE Alu -7 306 1 2193 104 26 16 chr1 15768016 15768324 -226896029 - AluSx SINE Alu 0 312 2 35 24 0 0 chr1 15768696 15768738 -226895615 + AT_rich Low_complexity Low_complexity 1 42 0 2349 87 0 13 chr1 15769007 15769306 -226895047 + AluSx SINE Alu 1 295 -17 1740 180 32 0 chr1 15770594 15770877 -226893476 - AluJb SINE Alu -20 292 1 26 0 0 0 chr1 15771034 15771060 -226893293 + AT_rich Low_complexity Low_complexity 1 26 0 2420 88 0 0 chr1 15771637 15771931 -226892422 - AluSg SINE Alu -16 294 1 2337 104 3 0 chr1 15772424 15772723 -226891630 - AluSp SINE Alu -13 300 1 24 53 0 0 chr1 15773521 15773559 -226890794 + AT_rich Low_complexity Low_complexity 1 38 0 618 176 109 0 chr1 15773559 15773678 -226890675 - FLAM_C SINE Alu 0 133 2 276 30 0 0 chr1 15774059 15774077 -226890276 + (CA)n Simple_repeat Simple_repeat 1 18 -300 1688 128 12 19 chr1 15774077 15774334 -226890019 + AluSx SINE Alu 1 255 -57 276 30 0 0 chr1 15774334 15774344 -226890009 + (CA)n Simple_repeat Simple_repeat 17 318 0 276 30 0 0 chr1 15774344 15774377 -226889976 + (CA)n Simple_repeat Simple_repeat 2 34 0 394 248 97 0 chr1 15774542 15774655 -226889698 - L2 LINE L2 -1 3312 3189 2447 87 0 0 chr1 15774655 15774955 -226889398 - AluY SINE Alu -11 300 1 266 294 118 15 chr1 15775259 15775395 -226888958 - MIR SINE MIR -9 253 104 580 171 271 52 chr1 15775659 15775910 -226888443 - MER33 DNA MER1_type 0 324 19 258 231 0 0 chr1 15783927 15783992 -226880361 + C-rich Low_complexity Low_complexity 3 67 0 1793 158 20 27 chr1 15784322 15784619 -226879734 + AluJb SINE Alu 1 295 -17 944 144 0 7 chr1 15784619 15784758 -226879595 + AluSq/x SINE Alu 2 139 -173 1918 126 20 40 chr1 15786077 15786379 -226877974 - AluSx SINE Alu -16 296 1 26 0 0 0 chr1 15786478 15786504 -226877849 + AT_rich Low_complexity Low_complexity 1 26 0 209 57 29 0 chr1 15788053 15788088 -226876265 + (TA)n Simple_repeat Simple_repeat 1 36 0 234 234 0 0 chr1 15793097 15793144 -226871209 + CT-rich Low_complexity Low_complexity 1 47 0 317 238 12 25 chr1 15794385 15794465 -226869888 - L2 LINE L2 0 3313 3235 377 201 51 45 chr1 15795655 15795777 -226868576 + MIR SINE MIR 47 169 -58 260 186 17 0 chr1 15799246 15799305 -226865048 + GA-rich Low_complexity Low_complexity 4 63 0 373 296 89 10 chr1 15800481 15800684 -226863669 + MLT1H LTR MaLR 82 300 -249 282 189 0 0 chr1 15800880 15800933 -226863420 + MLT1G LTR MaLR 537 589 -1 915 150 8 0 chr1 15801143 15801276 -226863077 - AluJb SINE Alu -178 134 1 237 253 13 27 chr1 15801771 15801846 -226862507 + MIR SINE MIR 175 248 -14 1800 141 41 10 chr1 15802540 15802831 -226861522 + AluJb SINE Alu 1 300 -12 2252 95 3 0 chr1 15802836 15803143 -226861210 + AluSx SINE Alu 1 308 0 366 150 0 43 chr1 15803631 15803838 -226860515 + AluJo SINE Alu 1 280 -22 434 266 138 45 chr1 15804724 15804862 -226859491 - L2 LINE L2 -106 3207 3083 2429 88 3 3 chr1 15804862 15805170 -226859183 + AluSg SINE Alu 1 308 -2 434 266 138 45 chr1 15805170 15805343 -226859010 - L2 LINE L2 -230 3083 2867 905 310 109 13 chr1 15805392 15805914 -226858439 - L2 LINE L2 -418 2896 2325 232 315 37 28 chr1 15805919 15806027 -226858326 - L2 LINE L2 -1093 2221 2113 * 240 253 138 11 chr1 15805998 15806085 -226858268 + MIR SINE MIR 49 146 -116 667 129 12 35 chr1 15807444 15807615 -226856738 + GA-rich Low_complexity Low_complexity 3 169 0 893 172 0 7 chr1 15807615 15807766 -226856587 + FRAM SINE Alu 1 40 0 237 265 10 59 chr1 15808210 15808312 -226856041 + MIR SINE MIR 110 206 -56 1505 127 0 5 chr1 15808878 15809091 -226855262 + AluJb SINE Alu 85 296 -16 1752 163 0 14 chr1 15809887 15810170 -226854183 + AluJb SINE Alu 3 281 -31 570 175 0 10 chr1 15810067 15810172 -226854181 + AluJb SINE Alu 180 317 0 216 29 88 0 chr1 15810172 15810206 -226854147 + A-rich Low_complexity Low_complexity 4 180 0 224 300 50 30 chr1 15810443 15810543 -226853810 - MIR SINE MIR -81 181 80 1139 150 12 0 chr1 15810766 15810939 -226853414 + FAM SINE Alu 1 47 -2 739 179 0 0 chr1 15810944 15811067 -226853286 + AluJo/FLAM SINE Alu 1 123 -179 824 179 15 0 chr1 15811067 15811078 -226853275 + AluJo SINE Alu 2 136 -176 248 217 141 22 chr1 15811186 15811278 -226853075 + L1ME3 LINE L1 7 109 -6010 1661 146 19 71 chr1 15811792 15812114 -226852239 + AluJo SINE Alu 6 310 -2 335 265 20 33 chr1 15812240 15812391 -226851962 + L1ME3 LINE L1 4483 4631 -1498 2137 136 3 0 chr1 15812399 15812700 -226851653 + AluJb SINE Alu 1 302 -10 2382 77 7 7 chr1 15812797 15813096 -226851257 + AluSg SINE Alu 1 299 -11 1078 246 114 57 chr1 15813097 15813956 -226850397 + L1ME3 LINE L1 5147 6060 -85 934 83 0 30 chr1 15814763 15814879 -226849474 + FRAM SINE Alu 39 152 -160 198 0 0 0 chr1 15814879 15814901 -226849452 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 934 83 0 30 chr1 15814901 15814916 -226849437 + FRAM SINE Alu 152 166 -10 1785 161 0 4 chr1 15815070 15815349 -226849004 + AluJb SINE Alu 15 292 -20 762 196 0 0 chr1 15815360 15815493 -226848860 + FLAM_C SINE Alu 1 133 0 769 268 13 21 chr1 15815659 15815894 -226848459 - MIR SINE MIR -28 234 2 902 177 111 5 chr1 15815894 15816092 -226848261 + MER20 DNA MER1_type 1 219 0 279 349 47 0 chr1 15816287 15816416 -226847937 - L2 LINE L2 -2 3270 3136 3345 123 5 49 chr1 15816884 15817435 -226846918 + MER1A DNA MER1_type 1 527 -2 1161 103 58 0 chr1 15818355 15818511 -226845842 - AluY SINE Alu -14 297 133 2430 91 0 0 chr1 15818511 15818808 -226845545 - AluSg SINE Alu -13 297 1 331 258 10 62 chr1 15819284 15819381 -226844972 - L1MC4 LINE L1 -1339 6703 6612 305 174 11 33 chr1 15819381 15819473 -226844880 + (CATATA)n Simple_repeat Simple_repeat 3 92 0 313 239 33 43 chr1 15819475 15819567 -226844786 - L1MC4 LINE L1 -1339 6703 6613 271 229 193 28 chr1 15819658 15819767 -226844586 - MIR SINE MIR -36 226 100 244 279 128 0 chr1 15820129 15820215 -226844138 + L2 LINE L2 3216 3312 -1 618 288 39 43 chr1 15820483 15820740 -226843613 + MLT1J LTR MaLR 206 461 -50 219 222 19 0 chr1 15821162 15821216 -226843137 + MIR SINE MIR 196 250 -12 258 250 70 20 chr1 15821216 15821316 -226843037 - L2 LINE L2 -30 3242 3138 608 304 159 5 chr1 15821475 15821847 -226842506 + L2 LINE L2 2289 2717 -597 2060 137 10 13 chr1 15821851 15822164 -226842189 + AluJo SINE Alu 1 312 0 1041 153 5 97 chr1 15822201 15822417 -226841936 - AluJo SINE Alu -116 196 1 2400 82 0 3 chr1 15822516 15822819 -226841534 - AluSx SINE Alu -10 302 1 440 304 127 18 chr1 15823123 15823343 -226841010 - MIR SINE MIR -2 260 17 226 208 26 26 chr1 15823682 15823759 -226840594 + (CCCG)n Simple_repeat Simple_repeat 2 78 0 758 237 64 5 chr1 15824209 15824428 -226839925 - MIR SINE MIR 0 262 31 417 404 29 3 chr1 15824558 15824870 -226839483 + L2 LINE L2 926 1245 -2069 2527 67 0 0 chr1 15824968 15825266 -226839087 - AluY SINE Alu -13 298 1 619 191 56 0 chr1 15825279 15825405 -226838948 - FLAM_A SINE Alu 0 133 1 5705 143 9 27 chr1 15825439 15825566 -226838787 - L1PB1 LINE L1 -2 6149 6021 2695 45 0 0 chr1 15825566 15825874 -226838479 - AluY SINE Alu -3 308 1 5705 143 9 27 chr1 15825874 15826564 -226837789 - L1PB1 LINE L1 -130 6021 5366 1924 107 29 58 chr1 15826564 15826874 -226837479 + AluSx SINE Alu 1 301 -11 5705 143 9 27 chr1 15826874 15827600 -226836753 - L1PB1 LINE L1 -785 5366 4628 493 86 0 0 chr1 15827648 15827718 -226836635 - L1PA11 LINE L1 -1 6173 6104 2780 137 23 68 chr1 15827719 15827786 -226836567 - MER49 LTR ERV1 -268 655 587 2008 142 3 17 chr1 15827786 15828081 -226836272 + AluJo SINE Alu 1 291 -21 2780 137 23 68 chr1 15828081 15828548 -226835805 - MER49 LTR ERV1 -336 587 144 2307 95 0 0 chr1 15828548 15828878 -226835475 + AluSx SINE Alu 1 330 0 2780 137 23 68 chr1 15828878 15828902 -226835451 - MER49 LTR ERV1 -779 144 120 1560 91 5 5 chr1 15828902 15829121 -226835232 - THE1C LTR MaLR 0 375 157 650 162 77 0 chr1 15829124 15829241 -226835112 + AluSq/x SINE Alu 2 127 -185 1158 85 2 51 chr1 15829256 15829453 -226834900 - THE1C LTR MaLR -164 191 1 864 137 0 0 chr1 15829453 15829577 -226834776 - MER49 LTR ERV1 -799 124 1 2485 136 14 16 chr1 15829577 15830012 -226834341 - L1MB1 LINE L1 -248 5920 5487 2449 79 3 0 chr1 15830178 15830470 -226833883 + AluSp SINE Alu 2 294 -19 636 269 94 71 chr1 15832051 15832161 -226832192 - L1MC5 LINE L1 -45 7916 7810 2338 123 0 0 chr1 15832161 15832471 -226831882 - AluSx SINE Alu -2 310 1 636 269 94 71 chr1 15832471 15832955 -226831398 - L1MC5 LINE L1 -151 7810 7308 2124 134 3 3 chr1 15832956 15833254 -226831099 - AluSx SINE Alu -14 298 1 1847 174 6 16 chr1 15833273 15833584 -226830769 - AluJo SINE Alu -4 308 1 534 240 50 42 chr1 15833704 15833924 -226830429 - L1MC4 LINE L1 -760 7201 7032 * 2031 152 51 88 chr1 15833919 15834269 -226830084 - L1MB7 LINE L1 0 6184 5823 2055 127 3 3 chr1 15834269 15834560 -226829793 - AluSx SINE Alu -21 291 1 2031 152 51 88 chr1 15834560 15834737 -226829616 - L1MB7 LINE L1 -361 5823 5675 2165 125 0 7 chr1 15834737 15835042 -226829311 - AluSx SINE Alu -9 303 1 2031 152 51 88 chr1 15835042 15835058 -226829295 - L1MB7 LINE L1 -509 5675 5660 317 317 45 12 chr1 15835056 15835302 -226829051 - L1MC4 LINE L1 -1850 5958 5705 * 1216 123 0 0 chr1 15835318 15835480 -226828873 - AluSq SINE Alu -151 162 1 2237 126 0 3 chr1 15835591 15835901 -226828452 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 15835947 15835969 -226828384 + AT_rich Low_complexity Low_complexity 1 22 0 2423 80 10 0 chr1 15836446 15836746 -226827607 + AluSx SINE Alu 3 305 -7 329 247 11 11 chr1 15836888 15837062 -226827291 + CT-rich Low_complexity Low_complexity 2 175 0 301 316 123 12 chr1 15842430 15842674 -226821679 + HERVL LTR ERVL 4044 4314 -1340 243 214 308 25 chr1 15843001 15843160 -226821193 - L1ME3A LINE L1 -52 6118 5915 622 212 16 54 chr1 15843177 15843326 -226821027 - L1MD3 LINE L1 0 7995 7853 1701 168 10 17 chr1 15843326 15843617 -226820736 + AluJo SINE Alu 1 289 -23 622 212 16 54 chr1 15843617 15843651 -226820702 - L1MD3 LINE L1 -142 7853 7819 320 271 49 8 chr1 15843690 15843812 -226820541 - L1MC3 LINE L1 -163 7622 7496 839 199 14 66 chr1 15843812 15843941 -226820412 - Tigger3(Golem) DNA MER2_type -98 2930 2814 2137 98 0 50 chr1 15843941 15844262 -226820091 + AluSq SINE Alu 1 306 0 839 199 14 66 chr1 15844262 15844342 -226820011 - Tigger3(Golem) DNA MER2_type -214 2814 2731 678 205 0 0 chr1 15844342 15844459 -226819894 + FLAM_C SINE Alu 1 117 -16 419 244 0 0 chr1 15844500 15844582 -226819771 - Tigger3(Golem) DNA MER2_type -2947 82 1 944 159 6 6 chr1 15844583 15844740 -226819613 - MER2 DNA MER2_type -188 157 1 608 216 50 0 chr1 15844878 15845017 -226819336 + MIR SINE MIR 47 192 -70 196 296 0 0 chr1 15845778 15845832 -226818521 - MIR SINE MIR -173 89 36 618 283 38 13 chr1 15845842 15846149 -226818204 + L2 LINE L2 2745 3057 -256 234 130 0 0 chr1 15846814 15846860 -226817493 + Alu SINE Alu 258 303 0 574 175 0 10 chr1 15846865 15846962 -226817391 + AluJ/FLAM SINE Alu 2 97 -215 692 277 142 29 chr1 15846966 15847460 -226816893 - L2 LINE L2 -302 3011 2463 2251 92 7 0 chr1 15847503 15847813 -226816540 - AluSp SINE Alu 0 312 1 619 186 0 0 chr1 15847882 15847995 -226816358 - FLAM_C SINE Alu -19 124 12 2191 108 0 7 chr1 15848021 15848328 -226816025 + AluSg SINE Alu 1 305 0 995 155 0 0 chr1 15848333 15848481 -226815872 + AluJo SINE Alu 87 234 -78 1181 120 0 0 chr1 15848500 15848658 -226815695 - AluJb SINE Alu -154 158 1 1859 240 42 4 chr1 15848661 15849136 -226815217 - L1MD3 LINE L1 -6 7989 7497 2109 131 0 23 chr1 15849170 15849475 -226814878 + AluSq SINE Alu 1 298 -15 1778 153 7 21 chr1 15849480 15849762 -226814591 + AluJb SINE Alu 1 278 -34 23 0 0 0 chr1 15849841 15849864 -226814489 + AT_rich Low_complexity Low_complexity 1 23 0 1857 195 46 72 chr1 15849881 15850204 -226814149 - MLT1D LTR MaLR 0 505 198 2430 84 0 3 chr1 15850204 15850503 -226813850 - AluSx SINE Alu -13 299 2 1857 195 46 72 chr1 15850503 15850676 -226813677 - MLT1D LTR MaLR -307 198 22 292 219 37 0 chr1 15850694 15850776 -226813577 - MER113 DNA MER1_type? -317 204 120 1875 160 0 63 chr1 15850809 15851141 -226813212 + AluSx SINE Alu 1 311 -1 2252 99 3 0 chr1 15851155 15851465 -226812888 + AluSp SINE Alu 1 311 0 2481 90 0 0 chr1 15851488 15851798 -226812555 - AluY SINE Alu -1 310 1 2482 88 0 3 chr1 15852388 15852695 -226811658 + AluSg SINE Alu 1 306 -4 180 94 0 31 chr1 15853140 15853172 -226811181 + MIR SINE MIR 113 143 -119 543 253 154 0 chr1 15853202 15853364 -226810989 + MER5A DNA MER1_type 3 189 0 1662 166 53 11 chr1 15853549 15853833 -226810520 + AluJb SINE Alu 1 296 -16 460 320 111 48 chr1 15854485 15854801 -226809552 - L2 LINE L2 0 3313 2978 203 294 44 0 chr1 15855153 15855221 -226809132 - L2 LINE L2 -18 3295 3225 1902 153 24 3 chr1 15855397 15855692 -226808661 - AluJo SINE Alu -11 301 1 448 289 57 61 chr1 15855696 15855942 -226808411 - MIR SINE MIR -13 249 5 272 332 34 88 chr1 15855964 15856259 -226808094 - L2 LINE L2 -49 3223 2945 429 280 18 48 chr1 15856290 15856458 -226807895 - L2 LINE L2 0 3313 3151 277 289 146 57 chr1 15856447 15856467 -226807886 - L2 LINE L2 -475 2839 2822 * 2213 97 0 52 chr1 15856467 15856796 -226807557 + AluSx SINE Alu 1 312 0 277 289 146 57 chr1 15856796 15857021 -226807332 - L2 LINE L2 -492 2822 2572 562 288 43 5 chr1 15857519 15857703 -226806650 - MIR SINE MIR -71 191 1 1148 195 20 46 chr1 15858711 15859013 -226805340 + LTR37A LTR ERV1 62 355 -71 1707 203 11 30 chr1 15859017 15859167 -226805186 + L1MB7 LINE L1 5541 5692 -492 2280 90 17 7 chr1 15859167 15859466 -226804887 + AluSq SINE Alu 1 302 -11 1707 203 11 30 chr1 15859466 15859685 -226804668 + L1MB7 LINE L1 5692 5903 -281 1738 171 3 47 chr1 15859685 15860007 -226804346 - AluJb SINE Alu -4 308 1 1534 176 4 0 chr1 15860008 15860263 -226804090 - AluJb SINE Alu -15 297 42 505 284 159 10 chr1 15860651 15860852 -226803501 + MIR SINE MIR 32 262 0 322 268 41 10 chr1 15861518 15861615 -226802738 + MIR SINE MIR 48 147 -61 282 234 23 141 chr1 15861612 15861740 -226802613 + L2 LINE L2 3159 3271 -1 * 721 248 95 18 chr1 15865959 15866181 -226798172 + MIR SINE MIR 20 258 -4 279 296 82 10 chr1 15866437 15866535 -226797818 + MIR SINE MIR 69 173 -89 270 138 0 0 chr1 15866727 15866785 -226797568 + (CCCTG)n Simple_repeat Simple_repeat 3 60 0 2199 96 3 0 chr1 15867143 15867434 -226796919 + AluSx SINE Alu 1 292 -20 957 131 13 0 chr1 15867453 15867606 -226796747 - FRAM SINE Alu -22 154 1 2049 127 0 28 chr1 15867833 15867974 -226796379 + AluSq SINE Alu 1 144 -169 2095 113 10 0 chr1 15867974 15868266 -226796087 + AluSp SINE Alu 1 295 -18 2049 127 0 28 chr1 15868266 15868446 -226795907 + AluSq SINE Alu 144 313 0 235 375 76 0 chr1 15868451 15868595 -226795758 - MIR SINE MIR -6 256 102 2090 112 20 0 chr1 15869082 15869377 -226794976 - AluSx SINE Alu -11 301 1 744 139 47 39 chr1 15869379 15869508 -226794845 - AluJo/FLAM SINE Alu -172 130 1 1207 171 70 9 chr1 15869525 15869753 -226794600 - AluJo SINE Alu -69 243 2 2360 78 3 3 chr1 15869986 15870295 -226794058 + AluSq SINE Alu 1 309 -4 2067 122 0 38 chr1 15870299 15870618 -226793735 + AluSq SINE Alu 3 309 -4 245 329 12 0 chr1 15871494 15871576 -226792777 - MIR3 SINE MIR -45 163 81 1088 175 27 136 chr1 15872628 15872966 -226791387 + AluJo SINE Alu 1 301 -1 687 108 0 0 chr1 15872966 15873068 -226791285 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 281 284 8 87 chr1 15873579 15873706 -226790647 + MIR SINE MIR 116 232 -30 * 302 287 45 64 chr1 15873699 15873856 -226790497 - MIR SINE MIR -22 240 87 202 289 58 0 chr1 15875062 15875114 -226789239 - MIR SINE MIR -92 170 116 229 256 314 0 chr1 15875122 15875208 -226789145 + L2 LINE L2 3201 3313 0 * 284 351 15 37 chr1 15875191 15875325 -226789028 - MIR3 SINE MIR -69 139 9 409 196 88 0 chr1 15875494 15875596 -226788757 + MER90 LTR ERV1 488 598 -16 297 0 0 0 chr1 15876380 15876413 -226787940 + (TG)n Simple_repeat Simple_repeat 2 34 0 1345 147 0 26 chr1 15876413 15876634 -226787719 - AluJo SINE Alu -11 301 85 257 228 18 0 chr1 15876640 15876697 -226787656 - MIR SINE MIR -63 145 88 201 294 0 0 chr1 15876699 15876750 -226787603 + L2 LINE L2 3262 3312 -1 2559 226 32 4 chr1 15876969 15877526 -226786827 + MER90 LTR ERV1 3 575 0 1011 159 0 2 chr1 15877762 15877978 -226786375 + (CCA)n Simple_repeat Simple_repeat 1 396 0 267 294 198 16 chr1 15877993 15878119 -226786234 + MIR3 SINE MIR 6 154 -54 2184 104 3 0 chr1 15878188 15878486 -226785867 + AluSx SINE Alu 1 299 -13 2165 98 0 0 chr1 15879129 15879466 -226784887 + AluSx SINE Alu 2 312 0 647 277 120 45 chr1 15879506 15879881 -226784472 + L2 LINE L2 2868 3270 -2 819 156 0 8 chr1 15880159 15880287 -226784066 + FLAM_C SINE Alu 1 127 -6 203 204 0 19 chr1 15880287 15880341 -226784012 + T-rich Low_complexity Low_complexity 3 55 0 1761 148 44 7 chr1 15880370 15880668 -226783685 + AluJo SINE Alu 1 309 -3 1927 144 30 0 chr1 15880960 15881259 -226783094 + AluJb SINE Alu 1 308 -4 341 285 11 62 chr1 15881270 15881449 -226782904 + L1MEd LINE L1 544 713 -5406 2023 106 49 0 chr1 15881449 15881733 -226782620 + AluSx SINE Alu 1 298 -14 2158 91 0 20 chr1 15881795 15882092 -226782261 - AluSx SINE Alu -21 291 1 210 143 0 0 chr1 15882108 15882143 -226782210 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 2020 201 37 5 chr1 15882143 15882550 -226781803 - MER21B LTR ERV1 -427 436 17 1507 166 73 64 chr1 15882566 15882625 -226781728 + L1MB7 LINE L1 5352 5409 -775 1279 162 97 97 chr1 15882625 15882790 -226781563 + MLT1A2 LTR MaLR 5 169 -205 1901 175 3 0 chr1 15882790 15883125 -226781228 - AluJb SINE Alu 0 312 1 1279 162 97 97 chr1 15883125 15883329 -226781024 + MLT1A2 LTR MaLR 168 374 0 1507 166 73 64 chr1 15883329 15883534 -226780819 + L1MB7 LINE L1 5409 5611 -573 2342 75 0 0 chr1 15883534 15883828 -226780525 + AluY SINE Alu 1 294 -17 2049 147 0 0 chr1 15883837 15884144 -226780209 + AluSx SINE Alu 1 307 -5 1507 166 73 64 chr1 15884144 15884308 -226780045 + L1MB7 LINE L1 5618 5782 -402 1986 142 0 0 chr1 15884309 15884639 -226779714 + AluSx SINE Alu 1 330 0 549 108 36 27 chr1 15885128 15885239 -226779114 + L1MB7 LINE L1 5785 5896 -282 887 191 6 0 chr1 15885242 15885399 -226778954 - AluJb SINE Alu -22 290 133 1910 136 0 11 chr1 15885419 15885730 -226778623 - AluSx SINE Alu 0 308 1 960 132 84 0 chr1 15885730 15885920 -226778433 + L1MB7 LINE L1 5908 6113 -71 3968 89 0 8 chr1 15885923 15886438 -226777915 - MER9 LTR ERVK 0 511 1 15871 61 15 6 chr1 15886438 15888628 -226775725 - HERVK9 LTR ERVK 0 5916 3708 * 20525 63 2 1 chr1 15888626 15891409 -226772944 - HERVK9 LTR ERVK -3130 2786 1 3973 92 0 4 chr1 15891409 15891922 -226772431 - MER9 LTR ERVK 0 511 1 254 102 0 0 chr1 15891928 15891977 -226772376 + L1MB7 LINE L1 6117 6165 -19 812 96 0 0 chr1 15892028 15892132 -226772221 + AluSq/x SINE Alu 1 104 -208 756 107 0 0 chr1 15892424 15892527 -226771826 - FRAM SINE Alu -14 162 60 515 177 0 0 chr1 15892577 15892656 -226771697 + AluJ/FLAM SINE Alu 16 94 -218 644 270 75 26 chr1 15893173 15893399 -226770954 + MIR SINE MIR 9 245 -17 701 268 63 58 chr1 15893436 15893783 -226770570 - L2 LINE L2 -86 3227 2879 468 232 20 73 chr1 15893798 15893949 -226770404 - MER20 DNA MER1_type -74 145 3 1435 133 165 16 chr1 15894449 15894704 -226769649 - AluJo SINE Alu -18 294 2 186 43 0 0 chr1 15894791 15894814 -226769539 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 213 223 0 0 chr1 15895024 15895118 -226769235 + (CA)n Simple_repeat Simple_repeat 1 94 0 226 278 196 0 chr1 15895500 15895597 -226768756 + MIR SINE MIR 25 140 -68 238 310 149 0 chr1 15896413 15896500 -226767853 + MIR SINE MIR 46 145 -63 278 253 105 11 chr1 15896600 15896695 -226767658 + MIR3 SINE MIR 52 155 -53 2044 104 31 0 chr1 15896757 15897044 -226767309 + AluSx SINE Alu 1 296 -16 1662 140 0 0 chr1 15897053 15897289 -226767064 + AluSx SINE Alu 1 236 -76 2221 78 0 0 chr1 15897330 15897636 -226766717 + AluSc SINE Alu 1 306 0 277 301 161 7 chr1 15898344 15898487 -226765866 - MIR SINE MIR -70 192 28 181 337 184 0 chr1 15898599 15898697 -226765656 + MIR SINE MIR 141 256 -6 464 326 96 21 chr1 15899626 15900046 -226764307 + L2 LINE L2 2746 3220 -52 248 274 186 0 chr1 15900061 15900174 -226764179 - L2 LINE L2 0 3313 3180 2179 84 14 3 chr1 15900296 15900592 -226763761 + AluSg SINE Alu 1 299 -11 749 252 87 22 chr1 15900840 15900947 -226763406 + MIR SINE MIR 15 114 -148 492 234 47 23 chr1 15900947 15901075 -226763278 + MER94 DNA DNA 1 131 -3 749 252 87 22 chr1 15901075 15901197 -226763156 + MIR SINE MIR 114 259 -3 234 0 0 0 chr1 15901219 15901245 -226763108 + (CA)n Simple_repeat Simple_repeat 1 26 0 1956 142 0 26 chr1 15901385 15901694 -226762659 - AluSq SINE Alu -12 301 1 238 331 39 15 chr1 15902341 15902471 -226761882 - MIR SINE MIR -59 149 17 396 235 92 8 chr1 15902553 15902672 -226761681 + MIR SINE MIR 64 192 -70 334 299 0 31 chr1 15903006 15903103 -226761250 - L2 LINE L2 0 3313 3220 426 280 82 104 chr1 15903703 15903982 -226760371 + L2 LINE L2 2973 3245 -27 613 290 12 0 chr1 15904152 15904321 -226760032 + MIR SINE MIR 90 260 -2 2263 189 36 61 chr1 15904356 15904629 -226759724 - L1MC3 LINE L1 -503 7282 7004 2037 148 0 3 chr1 15904629 15904932 -226759421 - AluSx SINE Alu -10 302 1 2263 189 36 61 chr1 15904932 15905302 -226759051 - L1MC3 LINE L1 -781 7004 6655 183 262 0 0 chr1 15906032 15906074 -226758279 + MIR SINE MIR 37 78 -130 306 295 152 10 chr1 15906078 15906384 -226757969 + L2 LINE L2 2716 3096 -176 414 353 35 6 chr1 15906461 15906503 -226757850 + MIR3 SINE MIR 11 50 -158 2393 86 0 0 chr1 15906503 15906807 -226757546 + AluSc SINE Alu 2 305 -4 414 353 35 6 chr1 15906807 15906937 -226757416 + MIR3 SINE MIR 50 188 -20 341 319 61 43 chr1 15906918 15907081 -226757272 + MIR SINE MIR 47 212 -50 * 28 0 0 0 chr1 15907503 15907531 -226756822 + AT_rich Low_complexity Low_complexity 1 28 0 271 271 0 41 chr1 15908441 15908563 -226755790 + G-rich Low_complexity Low_complexity 4 120 0 637 199 35 7 chr1 15908716 15908857 -226755496 - MIR SINE MIR -67 195 51 284 337 123 6 chr1 15909760 15909923 -226754430 + MER5A DNA MER1_type 8 189 0 297 233 68 0 chr1 15910001 15910074 -226754279 + L2 LINE L2 3195 3272 0 222 222 0 37 chr1 15910298 15910352 -226754001 - L2 LINE L2 0 3313 3262 305 219 61 12 chr1 15911291 15911373 -226752980 - MIR SINE MIR -161 101 16 207 269 75 0 chr1 15912007 15912074 -226752279 + MIR SINE MIR 68 139 -69 355 284 167 29 chr1 15912091 15912295 -226752058 + MIR SINE MIR 31 262 0 195 333 37 0 chr1 15912752 15912833 -226751520 + MIR SINE MIR 63 146 -116 556 270 153 5 chr1 15912956 15913145 -226751208 + MIR SINE MIR 17 233 -29 1949 151 0 0 chr1 15913742 15914040 -226750313 - AluJb SINE Alu -14 298 1 252 314 57 0 chr1 15914117 15914222 -226750131 + L2 LINE L2 2966 3076 -196 207 292 0 0 chr1 15914225 15914314 -226750039 + (CA)n Simple_repeat Simple_repeat 1 89 0 233 274 0 0 chr1 15914353 15914404 -226749949 + L2 LINE L2 3248 3298 -15 2241 103 0 0 chr1 15914408 15914708 -226749645 + AluSq SINE Alu 1 300 -13 204 347 6 40 chr1 15915595 15915768 -226748585 + G-rich Low_complexity Low_complexity 6 172 0 247 322 17 39 chr1 15915933 15916113 -226748240 + G-rich Low_complexity Low_complexity 3 178 0 207 237 88 105 chr1 15917405 15917519 -226746834 - MIR SINE MIR -33 229 118 383 309 49 0 chr1 15918419 15918542 -226745811 - MIR SINE MIR -118 144 16 1886 166 3 0 chr1 15918984 15919280 -226745073 - AluJo SINE Alu -15 297 1 288 0 0 0 chr1 15919414 15919446 -226744907 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2084 92 4 0 chr1 15919448 15919720 -226744633 + AluSp SINE Alu 1 273 -40 367 302 99 12 chr1 15919820 15919992 -226744361 - L1MD3 LINE L1 -102 7893 7707 792 199 14 66 chr1 15919992 15920121 -226744232 - Tigger3(Golem) DNA MER2_type -98 2930 2814 2036 98 0 50 chr1 15920121 15920442 -226743911 + AluSq SINE Alu 1 306 0 792 199 14 66 chr1 15920442 15920522 -226743831 - Tigger3(Golem) DNA MER2_type -214 2814 2731 720 205 0 0 chr1 15920522 15920639 -226743714 + FLAM_C SINE Alu 1 117 -16 388 244 0 0 chr1 15920680 15920762 -226743591 - Tigger3(Golem) DNA MER2_type -2947 82 1 880 159 6 6 chr1 15920763 15920920 -226743433 - MER2 DNA MER2_type -188 157 1 563 216 60 0 chr1 15921058 15921192 -226743161 + MIR SINE MIR 47 188 -74 188 346 187 0 chr1 15921647 15921754 -226742599 + L2 LINE L2 3180 3306 -7 217 311 22 33 chr1 15921911 15922001 -226742352 - MIR SINE MIR -138 124 36 708 284 72 5 chr1 15922011 15922315 -226742038 + L2 LINE L2 2745 3068 -245 182 326 12 47 chr1 15922900 15922986 -226741367 - L2 LINE L2 -6 3307 3225 594 184 0 10 chr1 15923020 15923118 -226741235 + AluJ/FLAM SINE Alu 1 97 -215 846 293 132 19 chr1 15923122 15923616 -226740737 - L2 LINE L2 -302 3011 2463 2184 81 7 0 chr1 15923659 15923965 -226740388 - AluSp SINE Alu 0 308 1 682 186 0 0 chr1 15924034 15924147 -226740206 - FLAM_C SINE Alu -19 124 12 2087 108 0 7 chr1 15924173 15924480 -226739873 + AluSg SINE Alu 1 305 0 936 181 0 0 chr1 15924485 15924640 -226739713 + AluJo SINE Alu 87 241 -71 1130 120 0 0 chr1 15924652 15924810 -226739543 - AluJb SINE Alu -154 158 1 1738 242 42 4 chr1 15924813 15925288 -226739065 - L1MD3 LINE L1 -6 7989 7497 2129 108 0 23 chr1 15925322 15925627 -226738726 + AluSq SINE Alu 1 298 -15 1672 160 7 21 chr1 15925632 15925914 -226738439 + AluJb SINE Alu 1 278 -34 23 0 0 0 chr1 15925993 15926016 -226738337 + AT_rich Low_complexity Low_complexity 1 23 0 1734 197 36 74 chr1 15926033 15926362 -226737991 - MLT1D LTR MaLR 0 505 200 2314 84 0 3 chr1 15926362 15926661 -226737692 - AluSx SINE Alu -13 299 2 1734 197 36 74 chr1 15926661 15926834 -226737519 - MLT1D LTR MaLR -305 200 22 257 254 33 16 chr1 15926852 15926967 -226737386 - MER113 DNA MER1_type? -317 204 85 1819 157 0 60 chr1 15926967 15927298 -226737055 + AluSx SINE Alu 1 311 -1 2170 95 3 0 chr1 15927312 15927622 -226736731 + AluSp SINE Alu 1 311 0 2404 84 0 0 chr1 15927645 15927955 -226736398 - AluY SINE Alu -1 310 1 2344 88 0 3 chr1 15928545 15928850 -226735503 + AluSg SINE Alu 1 304 -6 185 94 0 31 chr1 15929295 15929327 -226735026 + MIR SINE MIR 113 143 -119 613 210 161 6 chr1 15929357 15929519 -226734834 + MER5A DNA MER1_type 3 189 0 1597 166 53 11 chr1 15929704 15929988 -226734365 + AluJb SINE Alu 1 296 -16 522 320 111 48 chr1 15930640 15930956 -226733397 - L2 LINE L2 0 3313 2978 199 257 86 0 chr1 15931308 15931378 -226732975 - L2 LINE L2 -18 3295 3220 1819 153 24 3 chr1 15931553 15931848 -226732505 - AluJo SINE Alu -11 301 1 452 293 57 61 chr1 15931852 15932098 -226732255 - MIR SINE MIR -13 249 5 337 319 119 37 chr1 15932120 15932415 -226731938 - L2 LINE L2 -49 3264 2946 452 280 23 46 chr1 15932446 15932621 -226731732 - L2 LINE L2 0 3313 3143 322 298 143 49 chr1 15932603 15932623 -226731730 - L2 LINE L2 -475 2839 2822 * 1966 100 6 58 chr1 15932623 15932952 -226731401 + AluSx SINE Alu 1 312 0 322 298 143 49 chr1 15932952 15933176 -226731177 - L2 LINE L2 -492 2822 2572 629 283 43 5 chr1 15933674 15933858 -226730495 - MIR SINE MIR -71 191 1 1082 214 22 11 chr1 15934893 15935169 -226729184 + LTR37A LTR ERV1 77 355 -71 1529 202 19 30 chr1 15935173 15935320 -226729033 + L1MB7 LINE L1 5541 5688 -496 2182 90 17 7 chr1 15935320 15935619 -226728734 + AluSq SINE Alu 1 302 -11 1529 202 19 30 chr1 15935619 15935838 -226728515 + L1MB7 LINE L1 5688 5903 -281 1543 186 3 47 chr1 15935838 15936160 -226728193 - AluJb SINE Alu -4 308 1 1479 176 4 0 chr1 15936161 15936416 -226727937 - AluJb SINE Alu -15 297 42 491 289 159 10 chr1 15936804 15937005 -226727348 + MIR SINE MIR 32 262 0 322 268 41 10 chr1 15937670 15937767 -226726586 + MIR SINE MIR 48 147 -61 298 259 35 60 chr1 15937764 15937880 -226726473 + L2 LINE L2 3159 3271 -1 * 246 105 0 0 chr1 15941986 15942024 -226722329 + (GGA)n Simple_repeat Simple_repeat 2 39 0 278 270 155 40 chr1 15942985 15943133 -226721220 - MIR SINE MIR -70 192 28 211 257 97 53 chr1 15944185 15944298 -226720055 - MER5A DNA MER1_type -22 167 50 378 286 0 71 chr1 15944335 15944475 -226719878 - L2 LINE L2 -6 3266 3137 206 192 200 67 chr1 15944449 15944569 -226719784 - MIR3 SINE MIR -62 146 11 * 268 307 170 0 chr1 15945055 15945208 -226719145 + MIR SINE MIR 63 241 -21 320 349 81 15 chr1 15945471 15945669 -226718684 + MIR SINE MIR 27 237 -25 441 301 26 32 chr1 15948133 15948289 -226716064 + MIR3 SINE MIR 46 200 -8 669 247 47 16 chr1 15948531 15948721 -226715632 - MIR SINE MIR -32 230 35 184 316 40 0 chr1 15949305 15949381 -226714972 + MIR SINE MIR 67 145 -63 1607 147 22 67 chr1 15949424 15949736 -226714617 + AluJb SINE Alu 1 298 -14 2188 81 7 3 chr1 15949776 15950086 -226714267 - AluSq SINE Alu 0 312 2 28 0 0 0 chr1 15950952 15950980 -226713373 + GC_rich Low_complexity Low_complexity 1 28 0 301 194 30 0 chr1 15951059 15951126 -226713227 + MIR SINE MIR 103 171 -91 213 258 15 15 chr1 15951525 15951591 -226712762 + CT-rich Low_complexity Low_complexity 1 66 0 331 312 78 0 chr1 15952932 15953073 -226711280 - MIR SINE MIR -55 207 56 342 303 77 3 chr1 15953450 15953601 -226710752 + MIR SINE MIR 65 241 -21 189 280 67 0 chr1 15954843 15954918 -226709435 + MIR SINE MIR 49 128 -80 367 263 89 30 chr1 15954957 15955095 -226709258 - MIR3 SINE MIR -70 138 5 203 301 84 12 chr1 15955236 15955319 -226709034 + MIR3 SINE MIR 97 185 -23 506 250 47 27 chr1 15955942 15956090 -226708263 + MIR SINE MIR 38 188 -74 199 325 9 38 chr1 15956783 15956889 -226707464 + MIR SINE MIR 8 109 -105 373 290 14 36 chr1 15959564 15959702 -226704651 + MIR3 SINE MIR 24 158 -50 575 246 123 0 chr1 15959880 15960059 -226704294 + MIR SINE MIR 45 245 -17 334 275 122 8 chr1 15960130 15960261 -226704092 - MIR3 SINE MIR -58 150 5 1660 114 65 30 chr1 15961898 15962026 -226702327 + AluSx SINE Alu 3 125 -187 612 0 0 0 chr1 15962026 15962094 -226702259 + (CA)n Simple_repeat Simple_repeat 2 69 0 1660 114 65 30 chr1 15962094 15962227 -226702126 + AluSx SINE Alu 125 273 -39 513 258 78 88 chr1 15962631 15962801 -226701552 + LTR16A1 LTR ERVL 59 229 -228 2107 139 0 0 chr1 15962801 15963111 -226701242 + AluSx SINE Alu 1 310 -2 513 258 78 88 chr1 15963111 15963339 -226701014 + LTR16A1 LTR ERVL 229 453 -4 467 305 57 23 chr1 15964293 15964470 -226699883 + MIR SINE MIR 46 228 -34 1962 125 50 0 chr1 15964967 15965264 -226699089 - AluSx SINE Alu 0 312 1 257 288 176 7 chr1 15966816 15966969 -226697384 + MIR SINE MIR 63 241 -21 324 343 81 15 chr1 15967232 15967430 -226696923 + MIR SINE MIR 27 237 -25 246 62 0 0 chr1 15968386 15968418 -226695935 + (CA)n Simple_repeat Simple_repeat 1 32 0 461 308 27 0 chr1 15969833 15969979 -226694374 + MIR3 SINE MIR 51 200 -8 670 247 47 16 chr1 15970229 15970419 -226693934 - MIR SINE MIR -32 230 35 237 194 129 16 chr1 15970775 15970837 -226693516 - MIR SINE MIR -62 146 78 198 326 11 22 chr1 15971086 15971178 -226693175 + MIR SINE MIR 55 145 -63 1584 180 3 11 chr1 15971196 15971515 -226692838 + AluJo SINE Alu 1 317 0 1439 215 24 0 chr1 15971528 15971816 -226692537 + AluJo SINE Alu 1 295 -17 257 284 74 0 chr1 15972854 15972935 -226691418 + MIR SINE MIR 83 169 -93 204 291 0 47 chr1 15973335 15973421 -226690932 + CT-rich Low_complexity Low_complexity 4 85 0 403 275 101 0 chr1 15974688 15974826 -226689527 - MIR SINE MIR -55 207 56 367 287 37 0 chr1 15975191 15975299 -226689054 + MIR3 SINE MIR 60 171 -37 182 301 48 29 chr1 15976542 15976645 -226687708 + MIR SINE MIR 24 128 -80 384 246 89 30 chr1 15976684 15976822 -226687531 - MIR3 SINE MIR -70 138 5 181 265 41 0 chr1 15976964 15977013 -226687340 + MIR SINE MIR 95 145 -117 1922 144 10 0 chr1 15977071 15977362 -226686991 - AluSx SINE Alu -18 294 1 503 250 47 27 chr1 15977872 15978020 -226686333 + MIR SINE MIR 38 188 -74 378 284 37 0 chr1 15978374 15978483 -226685870 - MER91A DNA MER1_type -82 114 2 259 348 0 0 chr1 15978506 15978595 -226685758 + MIR SINE MIR 69 157 -105 331 221 18 80 chr1 15979259 15979372 -226684981 + MIR SINE MIR 65 170 -92 245 345 0 27 chr1 15980043 15980153 -226684200 + MIR3 SINE MIR 13 119 -89 319 294 29 37 chr1 15982820 15982956 -226681397 + MIR3 SINE MIR 24 158 -50 582 256 117 0 chr1 15983134 15983314 -226681039 + MIR SINE MIR 45 245 -17 333 304 22 37 chr1 15983385 15983520 -226680833 - MIR SINE MIR -58 150 18 657 257 120 44 chr1 15985470 15985836 -226678517 + LTR16A1 LTR ERVL 61 454 -3 21 0 0 0 chr1 15986413 15986434 -226677919 + GC_rich Low_complexity Low_complexity 1 21 0 445 322 51 17 chr1 15986801 15986978 -226677375 + MIR SINE MIR 46 228 -34 345 261 60 37 chr1 15987101 15987235 -226677118 + L1MCa LINE L1 1944 2080 -4346 350 317 177 58 chr1 15987867 15989455 -226674898 + L2 LINE L2 868 2644 -670 266 324 120 12 chr1 15989641 15989882 -226674471 + LTR16A1 LTR ERVL 161 427 -30 2087 107 45 0 chr1 15989931 15990221 -226674132 - AluSx SINE Alu -9 303 1 210 283 17 0 chr1 15990494 15990554 -226673799 + MIR SINE MIR 81 141 -67 180 111 0 0 chr1 15990649 15990676 -226673677 + (GAATG)n Simple_repeat Simple_repeat 3 29 0 231 218 55 0 chr1 15990676 15990731 -226673622 - MER112 DNA MER1_type -113 147 90 261 224 30 0 chr1 15990791 15990858 -226673495 - MER112 DNA MER1_type -185 75 7 207 355 233 15 chr1 15991714 15991976 -226672377 - L3b LINE CR1 -159 1424 1106 202 274 51 86 chr1 15992013 15992130 -226672223 - MIR3 SINE MIR -89 119 7 247 278 44 0 chr1 15992267 15992357 -226671996 + MIR SINE MIR 48 141 -121 724 282 31 54 chr1 15992977 15993236 -226671117 - MIR SINE MIR -8 254 2 195 352 148 23 chr1 15993304 15993392 -226670961 + L2 LINE L2 3125 3223 -49 1760 150 21 11 chr1 15993805 15994092 -226670261 - AluJo SINE Alu -17 295 6 350 309 229 5 chr1 15994140 15994328 -226670025 + MIR SINE MIR 27 256 -6 870 104 0 56 chr1 15994544 15994688 -226669665 + AluJo SINE Alu 1 136 -176 932 248 9 14 chr1 15994702 15994916 -226669437 - MIR SINE MIR 0 262 50 509 342 13 6 chr1 15995292 15995450 -226668903 + MIR SINE MIR 8 166 -96 285 349 30 8 chr1 15996098 15996230 -226668123 + L2 LINE L2 3138 3272 0 196 325 26 0 chr1 15996489 15996566 -226667787 - MIR SINE MIR -112 150 72 426 317 6 22 chr1 15996813 15996996 -226667357 + (CA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr1 15997035 15997058 -226667295 + (CA)n Simple_repeat Simple_repeat 2 24 0 2278 84 0 40 chr1 15997278 15997425 -226666928 + AluSx SINE Alu 1 152 -160 2083 100 30 10 chr1 15997425 15997724 -226666629 + AluSq SINE Alu 1 305 -8 2278 84 0 40 chr1 15997724 15997898 -226666455 + AluSx SINE Alu 152 309 -3 712 255 99 5 chr1 15998062 15998274 -226666079 + MIR SINE MIR 13 244 -18 211 244 0 0 chr1 15998376 15998417 -226665936 - L2 LINE L2 -5 3308 3268 590 183 70 0 chr1 15999022 15999137 -226665216 - MIR SINE MIR -56 152 30 187 163 0 93 chr1 16000017 16000060 -226664293 + L2 LINE L2 3272 3310 -3 534 296 36 109 chr1 16000136 16000521 -226663832 - L2 LINE L2 -1 3271 2915 249 125 25 0 chr1 16000781 16000821 -226663532 - Alu SINE Alu -259 44 4 248 294 67 8 chr1 16001065 16001184 -226663169 + MIR3 SINE MIR 34 159 -49 319 268 134 43 chr1 16001464 16001628 -226662725 + HAL1 LINE L1 1121 1299 -1208 198 274 0 16 chr1 16002586 16002648 -226661705 - L3b LINE CR1 -217 1366 1306 2141 127 0 0 chr1 16002784 16003084 -226661269 + AluSx SINE Alu 1 300 -12 481 288 15 0 chr1 16003302 16003434 -226660919 - L2 LINE L2 -11 3302 3169 260 300 77 23 chr1 16003482 16003612 -226660741 + L2 LINE L2 2965 3101 -171 1296 264 95 45 chr1 16003630 16004270 -226660083 - L1ME3 LINE L1 -2 6160 5489 911 147 15 0 chr1 16004411 16004547 -226659806 + AluSg/x SINE Alu 136 273 -39 825 131 31 0 chr1 16004550 16004710 -226659643 + GA-rich Low_complexity Low_complexity 3 167 0 225 325 179 0 chr1 16005452 16005603 -226658750 - L3 LINE CR1 -10 1567 1390 371 270 79 85 chr1 16005606 16005795 -226658558 - MIR SINE MIR 0 262 75 504 273 81 29 chr1 16005978 16006150 -226658203 + MER5A DNA MER1_type 7 187 -2 1600 112 155 4 chr1 16006184 16006442 -226657911 + AluSx SINE Alu 1 297 -15 252 163 20 20 chr1 16007302 16007351 -226657002 - L2 LINE L2 -229 3043 2995 978 236 4 54 chr1 16007583 16007705 -226656648 + MIR SINE MIR 29 135 -127 2206 81 20 3 chr1 16007705 16008000 -226656353 + AluSx SINE Alu 1 300 -12 978 236 4 54 chr1 16008000 16008118 -226656235 + MIR SINE MIR 135 257 -5 219 241 19 0 chr1 16008139 16008193 -226656160 + (CTCA)n Simple_repeat Simple_repeat 2 56 0 542 299 123 0 chr1 16008886 16009073 -226655280 - MIR SINE MIR -12 250 41 560 138 55 9 chr1 16009209 16009318 -226655035 - L1MB3 LINE L1 -68 6115 6002 2119 100 3 13 chr1 16009351 16009677 -226654676 + AluSq SINE Alu 1 296 -17 516 293 29 46 chr1 16009677 16009851 -226654502 + MIR SINE MIR 89 259 -3 207 250 261 0 chr1 16010140 16010232 -226654121 - MIR SINE MIR -119 143 28 218 130 43 43 chr1 16010314 16010360 -226653993 - MIR SINE MIR -117 145 100 536 231 36 107 chr1 16010689 16010767 -226653586 + MER63A DNA MER1_type 1 83 -1605 2318 96 0 3 chr1 16010767 16011080 -226653273 + AluSx SINE Alu 1 312 0 536 231 36 107 chr1 16011080 16011226 -226653127 + MER63A DNA MER1_type 83 209 -1 353 278 41 0 chr1 16011228 16011325 -226653028 + MIR SINE MIR 83 183 -79 2035 125 0 28 chr1 16012949 16013131 -226651222 - AluSg SINE Alu 0 310 139 2327 52 42 0 chr1 16013131 16013420 -226650933 - AluY SINE Alu -10 301 1 2035 125 0 28 chr1 16013420 16013556 -226650797 - AluSg SINE Alu -171 139 1 1869 131 6 51 chr1 16013557 16013734 -226650619 - AluJb SINE Alu -12 300 142 2286 83 0 0 chr1 16013734 16014022 -226650331 - AluY SINE Alu -19 292 5 1869 131 6 51 chr1 16014022 16014158 -226650195 - AluJb SINE Alu -170 142 1 469 251 15 70 chr1 16014345 16014559 -226649794 + MIR SINE MIR 35 234 -28 2173 95 17 0 chr1 16014606 16014900 -226649453 + AluSx SINE Alu 3 301 -11 1169 63 25 13 chr1 16014900 16015058 -226649295 + L1PA7 LINE L1 5991 6150 -4 258 105 0 0 chr1 16015581 16015619 -226648734 + (ATG)n Simple_repeat Simple_repeat 2 39 0 485 312 71 18 chr1 16015677 16015847 -226648506 + MIR SINE MIR 21 199 -63 1855 149 10 0 chr1 16015849 16016160 -226648193 + AluSx SINE Alu 1 314 0 458 301 29 0 chr1 16016363 16016499 -226647854 - MIR SINE MIR -100 162 23 191 353 0 0 chr1 16016764 16016815 -226647538 - L3b LINE CR1 -95 1488 1438 391 297 125 10 chr1 16017022 16017214 -226647139 - MIR SINE MIR -2 260 47 328 336 18 0 chr1 16017677 16017787 -226646566 - MIR3 SINE MIR -87 121 10 417 335 54 12 chr1 16018398 16018565 -226645788 - MIR SINE MIR -14 248 75 2241 100 7 3 chr1 16019502 16019811 -226644542 - AluSq SINE Alu -3 310 1 192 296 0 0 chr1 16020483 16020527 -226643826 - L2 LINE L2 -89 3183 3140 411 277 0 11 chr1 16021073 16021167 -226643186 + MIR SINE MIR 72 164 -98 1712 174 10 16 chr1 16021361 16021665 -226642688 + AluJo SINE Alu 1 302 -10 399 259 6 82 chr1 16021872 16022030 -226642323 + MIR SINE MIR 111 256 -6 248 335 47 0 chr1 16022263 16022405 -226641948 + MIR SINE MIR 32 178 -63 2099 127 0 0 chr1 16022431 16022722 -226641631 + AluSx SINE Alu 1 291 -21 191 125 0 0 chr1 16023162 16023194 -226641159 - MIR3 SINE MIR -15 193 162 201 367 38 0 chr1 16023405 16023484 -226640869 - MIR3 SINE MIR -38 170 89 * 287 339 80 0 chr1 16023473 16023585 -226640768 + MIR SINE MIR 72 192 -70 189 103 0 0 chr1 16023703 16023732 -226640621 - L2 LINE L2 -224 3048 3020 1356 149 44 104 chr1 16023742 16023883 -226640470 + AluJo SINE Alu 1 149 -163 2045 91 0 11 chr1 16023883 16024157 -226640196 + AluSg SINE Alu 2 272 -38 1356 149 44 104 chr1 16024157 16024331 -226640022 + AluJo SINE Alu 149 297 -15 2267 102 0 6 chr1 16025241 16025555 -226638798 + AluSx SINE Alu 1 312 0 1030 136 0 57 chr1 16025555 16025731 -226638622 + AluSg/x SINE Alu 134 299 -13 228 310 0 0 chr1 16026057 16026115 -226638238 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 438 192 217 25 chr1 16026304 16026387 -226637966 - MIR SINE MIR -118 144 78 1290 125 58 31 chr1 16026387 16026503 -226637850 + MER30 DNA MER1_type 1 112 -118 2236 94 0 3 chr1 16026503 16026800 -226637553 + AluSg SINE Alu 1 296 -14 1290 125 58 31 chr1 16026800 16026907 -226637446 + MER30 DNA MER1_type 112 230 0 438 192 217 25 chr1 16026907 16026943 -226637410 - MIR SINE MIR -184 78 2 198 217 43 0 chr1 16027717 16027763 -226636590 + MIR SINE MIR 96 143 -65 198 333 73 0 chr1 16028612 16028708 -226635645 - L2 LINE L2 -9 3304 3202 418 287 129 34 chr1 16029584 16029793 -226634560 - MIR SINE MIR -21 241 13 2016 106 62 0 chr1 16029795 16030087 -226634266 - AluSx SINE Alu -2 310 1 825 123 0 15 chr1 16030089 16030219 -226634134 - AluJo/FLAM SINE Alu -174 128 1 283 356 19 0 chr1 16031415 16031519 -226632834 - L2 LINE L2 -9 3263 3158 719 204 4 0 chr1 16031658 16031909 -226632444 + (TGGA)n Simple_repeat Simple_repeat 1 252 0 403 259 6 6 chr1 16031891 16032053 -226632300 + (TGGG)n Simple_repeat Simple_repeat 1 162 0 * 735 182 11 6 chr1 16032033 16032209 -226632144 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 253 196 0 0 chr1 16032210 16032256 -226632097 + (TGGG)n Simple_repeat Simple_repeat 1 46 0 869 168 6 0 chr1 16032264 16032443 -226631910 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chr1 16033323 16033347 -226631006 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 289 293 113 0 chr1 16033845 16033951 -226630402 - MIR3 SINE MIR -26 182 65 411 217 21 19 chr1 16034006 16034132 -226630221 + MIR SINE MIR 101 226 -36 586 294 0 0 chr1 16035004 16035147 -226629206 + MIR SINE MIR 43 185 -77 209 303 15 0 chr1 16036063 16036129 -226628224 - MIR3 SINE MIR -53 155 89 213 239 0 22 chr1 16036551 16036597 -226627756 + MER5B DNA MER1_type 121 165 -13 386 297 0 42 chr1 16036611 16036729 -226627624 - MIR3 SINE MIR -53 155 43 1028 238 40 0 chr1 16036792 16037044 -226627309 - MIR SINE MIR 0 262 1 2003 116 3 20 chr1 16037059 16037362 -226626991 - AluJb SINE Alu -14 298 1 518 279 61 0 chr1 16038490 16038637 -226625716 + MIR SINE MIR 81 236 -26 318 288 72 16 chr1 16038960 16039085 -226625268 + L2 LINE L2 3133 3264 -8 332 266 35 9 chr1 16039185 16039298 -226625055 + MIR3 SINE MIR 87 202 -6 241 284 64 0 chr1 16039465 16039574 -226624779 - MIR SINE MIR -63 145 30 193 318 62 31 chr1 16040350 16040479 -226623874 - MIR3 SINE MIR -75 133 1 194 67 0 33 chr1 16042882 16042912 -226621441 + MIR SINE MIR 119 147 -61 2292 87 0 6 chr1 16043699 16044011 -226620342 + AluSq SINE Alu 1 310 -3 502 294 38 19 chr1 16045808 16045968 -226618385 - MIR SINE MIR -59 203 41 388 318 11 6 chr1 16046636 16046783 -226617570 + (TG)n Simple_repeat Simple_repeat 1 151 -29 1965 116 13 20 chr1 16046783 16047085 -226617268 + AluSx SINE Alu 1 300 -12 388 318 11 6 chr1 16047085 16047116 -226617237 + (TG)n Simple_repeat Simple_repeat 151 180 0 217 244 7 7 chr1 16047143 16047278 -226617075 + (TG)n Simple_repeat Simple_repeat 1 135 0 389 312 110 0 chr1 16047318 16047472 -226616881 + MIR SINE MIR 92 262 0 182 267 126 89 chr1 16047638 16047773 -226616580 - L2 LINE L2 -527 2787 2648 2067 103 27 0 chr1 16047797 16048089 -226616264 + AluSx SINE Alu 1 300 -12 253 246 15 46 chr1 16048089 16048144 -226616209 + L2 LINE L2 3217 3271 -1 1276 149 0 62 chr1 16048929 16049171 -226615182 + AluJb SINE Alu 86 312 0 490 304 15 7 chr1 16049176 16049311 -226615042 - MIR SINE MIR -5 257 122 2410 80 0 0 chr1 16049709 16050011 -226614342 - AluSg SINE Alu -8 302 1 2099 115 0 3 chr1 16050061 16050357 -226613996 - AluSx SINE Alu -17 295 1 1878 90 105 0 chr1 16050372 16050649 -226613704 - AluSc SINE Alu -1 308 3 543 292 105 14 chr1 16050666 16050875 -226613478 - MIR SINE MIR -6 256 29 276 214 0 0 chr1 16051022 16051078 -226613275 + L2 LINE L2 3257 3312 -1 314 342 0 25 chr1 16051149 16051269 -226613084 + MIR SINE MIR 146 262 0 215 311 123 33 chr1 16051360 16051482 -226612871 + L2 LINE L2 3176 3308 -5 21 0 0 0 chr1 16052170 16052191 -226612162 + AT_rich Low_complexity Low_complexity 1 21 0 2167 112 3 10 chr1 16052200 16052514 -226611839 + AluSp SINE Alu 1 312 -1 2031 63 16 94 chr1 16052625 16052943 -226611410 + AluSq SINE Alu 1 293 -20 523 253 47 47 chr1 16052955 16053125 -226611228 + L2 LINE L2 2905 3074 -239 1337 86 6 0 chr1 16053131 16053305 -226611048 + AluSp SINE Alu 1 175 -138 628 0 49 0 chr1 16053311 16053393 -226610960 + (TAAAA)n Simple_repeat Simple_repeat 2 87 0 328 262 91 104 chr1 16053427 16053648 -226610705 + L2 LINE L2 3094 3311 -2 296 314 73 7 chr1 16053690 16053827 -226610526 + MIR SINE MIR 73 218 -44 642 289 77 5 chr1 16053989 16054183 -226610170 - MIR SINE MIR -48 214 7 330 272 173 40 chr1 16054351 16054524 -226609829 + MIR SINE MIR 67 262 0 218 156 22 0 chr1 16054634 16054679 -226609674 + GA-rich Low_complexity Low_complexity 1 46 0 225 0 0 0 chr1 16054992 16055017 -226609336 + (CA)n Simple_repeat Simple_repeat 1 25 0 1301 168 52 4 chr1 16055319 16055569 -226608784 + MER70A LTR ERVL 211 472 0 2032 134 6 22 chr1 16055741 16055915 -226608438 - AluSq SINE Alu -4 309 141 2155 74 36 36 chr1 16055915 16056224 -226608129 - AluSq SINE Alu -4 309 1 2032 134 6 22 chr1 16056224 16056363 -226607990 - AluSq SINE Alu -172 141 1 2312 88 0 3 chr1 16056750 16057057 -226607296 - AluY SINE Alu -1 310 5 1639 150 95 0 chr1 16057057 16057331 -226607022 - AluSx SINE Alu -12 300 1 874 333 94 5 chr1 16057394 16057799 -226606554 - L2 LINE L2 0 3313 2873 522 302 169 17 chr1 16057844 16058145 -226606208 - L2 LINE L2 -713 2601 2255 2254 114 0 3 chr1 16058147 16058453 -226605900 + AluSx SINE Alu 1 305 -7 27 0 0 0 chr1 16058485 16058512 -226605841 + AT_rich Low_complexity Low_complexity 1 27 0 1933 138 10 20 chr1 16059422 16059720 -226604633 + AluJb SINE Alu 1 295 -17 1457 94 6 0 chr1 16059831 16060011 -226604342 - AluSp SINE Alu -131 182 2 231 295 40 96 chr1 16060017 16060392 -226603961 + L2 LINE L2 2699 3053 -219 2356 90 0 0 chr1 16060828 16061118 -226603235 - AluSx SINE Alu -21 291 2 198 103 0 0 chr1 16061171 16061200 -226603153 + (A)n Simple_repeat Simple_repeat 1 29 0 728 160 160 80 chr1 16061364 16061549 -226602804 + AluJo SINE Alu 85 289 -23 2641 68 0 0 chr1 16061549 16061860 -226602493 + AluY SINE Alu 1 311 0 728 160 160 80 chr1 16061860 16061874 -226602479 + AluJo SINE Alu 289 300 -12 187 137 20 20 chr1 16061875 16061926 -226602427 + G-rich Low_complexity Low_complexity 1 51 0 818 159 34 51 chr1 16061942 16062118 -226602235 + FRAM SINE Alu 1 164 -12 851 219 17 6 chr1 16062490 16062668 -226601685 + AluJo SINE Alu 116 295 -17 30 0 0 0 chr1 16062753 16062783 -226601570 + AT_rich Low_complexity Low_complexity 1 30 0 2266 125 0 3 chr1 16062783 16063094 -226601259 + AluSx SINE Alu 1 310 -2 402 234 73 16 chr1 16063144 16063281 -226601072 + MIR SINE MIR 4 146 -62 2436 88 7 0 chr1 16063733 16064038 -226600315 - AluSp SINE Alu -6 307 1 216 0 0 0 chr1 16064040 16064064 -226600289 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1872 122 48 0 chr1 16064064 16064334 -226600019 - AluSx SINE Alu -29 283 1 2582 52 0 16 chr1 16064336 16064675 -226599678 - AluY SINE Alu 0 311 1 2135 120 3 10 chr1 16064677 16064835 -226599518 - AluSc SINE Alu -19 290 133 2326 112 3 3 chr1 16064835 16065147 -226599206 - AluSq SINE Alu -1 312 1 2135 120 3 10 chr1 16065147 16065280 -226599073 - AluSc SINE Alu -176 133 1 1534 170 61 11 chr1 16065291 16065568 -226598785 - AluJo SINE Alu -21 291 1 439 228 48 66 chr1 16065753 16065857 -226598496 - L1MC3 LINE L1 -644 7141 7040 2127 117 0 3 chr1 16065857 16066139 -226598214 - AluSg SINE Alu -29 281 1 439 228 48 66 chr1 16066139 16066201 -226598152 - L1MC3 LINE L1 -745 7040 6978 180 0 0 0 chr1 16066201 16066221 -226598132 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1975 132 4 4 chr1 16066224 16066505 -226597848 - AluSx SINE Alu -31 281 1 482 186 102 17 chr1 16066625 16066743 -226597610 - AluJo SINE Alu -100 212 85 600 120 11 11 chr1 16066761 16066853 -226597500 - AluSq/x SINE Alu -177 135 44 946 220 6 0 chr1 16067727 16067900 -226596453 - AluJo SINE Alu -14 298 125 1365 106 0 6 chr1 16067919 16068099 -226596254 + AluSq SINE Alu 1 179 -134 2471 82 0 19 chr1 16068328 16068644 -226595709 + AluSg SINE Alu 1 310 0 226 203 34 0 chr1 16069731 16069790 -226594563 - L1ME3A LINE L1 -30 6140 6080 2171 121 7 0 chr1 16069816 16070113 -226594240 - AluSx SINE Alu -13 299 1 3076 164 94 38 chr1 16070236 16070969 -226593384 + L1MC3 LINE L1 6088 6861 -924 2253 119 13 0 chr1 16070995 16071298 -226593055 + AluSg SINE Alu 1 307 -3 1904 174 0 10 chr1 16071409 16071719 -226592634 + AluJo SINE Alu 1 307 -5 1870 155 17 10 chr1 16071740 16072037 -226592316 + AluJb SINE Alu 1 299 -13 2409 84 13 0 chr1 16072325 16072623 -226591730 - AluSg SINE Alu -8 302 1 192 273 0 0 chr1 16072887 16072931 -226591422 + L2 LINE L2 3216 3259 -13 863 181 29 23 chr1 16073001 16073172 -226591181 - AluJ SINE Alu -7 305 134 2124 132 37 0 chr1 16073203 16073498 -226590855 - AluSx SINE Alu -6 306 1 1826 154 0 38 chr1 16073523 16073842 -226590511 + AluJo SINE Alu 1 307 -5 2160 201 66 29 chr1 16073898 16074458 -226589895 + L1MC1 LINE L1 4264 4851 -1295 822 171 0 0 chr1 16074458 16074587 -226589766 - AluJ SINE Alu -173 129 1 2160 201 66 29 chr1 16074587 16074644 -226589709 + L1MC1 LINE L1 4851 4904 -1242 858 192 13 0 chr1 16074644 16074800 -226589553 + FAM SINE Alu 1 158 -17 1130 178 13 56 chr1 16074801 16075032 -226589321 - AluJb SINE Alu -7 305 85 2299 116 7 0 chr1 16075047 16075350 -226589003 - AluSx SINE Alu -7 305 1 2376 91 0 38 chr1 16075365 16075684 -226588669 - AluSc SINE Alu -2 307 1 534 284 95 0 chr1 16075699 16075921 -226588432 + L1MC1 LINE L1 4890 5132 -1014 1683 162 0 57 chr1 16075921 16076070 -226588283 + AluJb SINE Alu 1 126 -186 1895 130 9 68 chr1 16076070 16076221 -226588132 + AluSx SINE Alu 1 125 -187 2562 60 3 0 chr1 16076221 16076519 -226587834 + AluY SINE Alu 1 299 -12 1895 130 9 68 chr1 16076519 16076689 -226587664 + AluSx SINE Alu 125 303 -9 1683 162 0 57 chr1 16076689 16076836 -226587517 + AluJb SINE Alu 126 280 -32 776 168 9 106 chr1 16076846 16077020 -226587333 + L1MC1 LINE L1 5127 5276 -870 1104 121 181 107 chr1 16077020 16077301 -226587052 + AluSx SINE Alu 1 302 0 776 168 9 106 chr1 16077301 16077352 -226587001 + L1MC1 LINE L1 5276 5330 -816 974 117 97 0 chr1 16077353 16077498 -226586855 + AluY SINE Alu 136 294 -17 1865 159 19 35 chr1 16077508 16077811 -226586542 + AluJo SINE Alu 1 300 -12 309 51 0 0 chr1 16077811 16077850 -226586503 + (TA)n Simple_repeat Simple_repeat 2 40 0 5633 135 22 31 chr1 16077860 16078384 -226585969 + L1MC1 LINE L1 5323 5851 -482 1627 194 7 17 chr1 16078384 16078678 -226585675 + AluJb SINE Alu 1 291 -21 5633 135 22 31 chr1 16078678 16079095 -226585258 + L1MC1 LINE L1 5851 6256 -77 2107 145 0 0 chr1 16079095 16079399 -226584954 - AluSx SINE Alu -5 307 4 5633 135 22 31 chr1 16079399 16079475 -226584878 + L1MC1 LINE L1 6256 6331 -2 363 320 23 64 chr1 16079572 16079744 -226584609 + HAL1b LINE L1 1 3199 -1183 2142 91 15 0 chr1 16080283 16080557 -226583796 - AluSx SINE Alu -34 278 1 414 299 184 5 chr1 16080686 16080893 -226583460 + MIR SINE MIR 19 262 0 2171 82 0 0 chr1 16080947 16081215 -226583138 + AluY SINE Alu 38 305 -6 2363 109 6 0 chr1 16082196 16082507 -226581846 + AluSp SINE Alu 1 313 0 2548 171 28 2 chr1 16082514 16082971 -226581382 + L1MB2 LINE L1 5580 6048 -123 672 158 118 0 chr1 16083089 16083216 -226581137 - FLAM_C SINE Alu 0 143 2 * 684 143 17 17 chr1 16083216 16083325 -226581028 + AluJo SINE Alu 28 136 -176 1678 184 3 30 chr1 16083332 16083637 -226580716 + AluJb SINE Alu 13 309 -3 844 157 12 6 chr1 16083646 16083812 -226580541 + GA-rich Low_complexity Low_complexity 1 167 0 2591 74 0 0 chr1 16083829 16084140 -226580213 + AluY SINE Alu 1 311 0 3097 172 26 8 chr1 16084143 16084729 -226579624 + L1MD3 LINE L1 7395 7990 -5 2412 113 0 0 chr1 16084784 16085095 -226579258 + AluSx SINE Alu 1 311 -1 1873 147 33 16 chr1 16085115 16085422 -226578931 + AluJb SINE Alu 1 312 0 191 344 39 0 chr1 16085516 16085670 -226578683 - L3 LINE CR1 -235 1342 1183 763 307 144 30 chr1 16085746 16086096 -226578257 + MLT1K LTR MaLR 102 513 -75 2015 119 0 0 chr1 16086105 16086366 -226577987 + AluSq SINE Alu 1 261 -52 1308 197 128 75 chr1 16086366 16086834 -226577519 + MLT1D LTR MaLR 8 503 -2 763 307 144 30 chr1 16086834 16086920 -226577433 + MLT1K LTR MaLR 513 588 0 216 318 76 23 chr1 16087889 16088021 -226576332 - L3b LINE CR1 -101 1482 1344 563 195 64 92 chr1 16088641 16089045 -226575308 + L2 LINE L2 2694 3059 -254 680 209 95 31 chr1 16089144 16089364 -226574989 + MIR SINE MIR 11 245 -17 2250 122 0 3 chr1 16089439 16089733 -226574620 + AluSx SINE Alu 1 293 -19 1069 163 0 0 chr1 16089733 16089899 -226574454 + AluSg/x SINE Alu 135 300 -10 1847 162 7 34 chr1 16089910 16090207 -226574146 + AluJo SINE Alu 1 289 -23 411 237 79 9 chr1 16090416 16090530 -226573823 + MIR SINE MIR 34 155 -107 836 126 0 0 chr1 16091844 16091963 -226572390 - AluSg/x SINE Alu -1 309 191 290 282 91 9 chr1 16092041 16092151 -226572202 + L2 LINE L2 3182 3300 -13 343 306 124 41 chr1 16092560 16092972 -226571381 + L2 LINE L2 2826 3271 -1 932 116 0 0 chr1 16093015 16093144 -226571209 - FLAM_C SINE Alu -4 129 1 228 311 113 19 chr1 16093312 16093418 -226570935 + MIR SINE MIR 141 256 -6 224 293 0 30 chr1 16095504 16095603 -226568750 + C-rich Low_complexity Low_complexity 5 100 0 34 24 0 0 chr1 16095883 16095924 -226568429 + GC_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr1 16096064 16096086 -226568267 + GC_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr1 16096314 16096338 -226568015 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 303 273 8 61 chr1 16097371 16097503 -226566850 + MIR3 SINE MIR 15 139 -69 813 251 144 0 chr1 16098205 16098420 -226565933 - MIR SINE MIR -3 259 14 462 255 87 43 chr1 16099592 16099776 -226564577 - L2 LINE L2 -61 3211 3020 384 205 16 118 chr1 16100870 16100997 -226563356 + MIR SINE MIR 30 143 -65 541 216 52 0 chr1 16102439 16102555 -226561798 - MIR SINE MIR -13 249 128 636 155 28 70 chr1 16102557 16102691 -226561662 + MER2 DNA MER2_type 1 130 -215 2020 146 3 7 chr1 16102691 16103039 -226561314 - AluSx SINE Alu 0 312 1 1772 161 0 21 chr1 16103086 16103371 -226560982 - AluJb SINE Alu -32 280 2 482 250 82 10 chr1 16103372 16103580 -226560773 + MER2 DNA MER2_type 122 344 -1 389 244 205 0 chr1 16103598 16103725 -226560628 - MIR SINE MIR -63 199 47 1085 83 8 0 chr1 16103728 16103861 -226560492 + AluSq/x SINE Alu 1 134 -178 2326 102 0 25 chr1 16103864 16104178 -226560175 + AluSg SINE Alu 3 308 -2 2437 57 3 0 chr1 16104398 16104723 -226559630 - AluSp SINE Alu 0 326 1 536 305 49 0 chr1 16105637 16105801 -226558552 - MIR SINE MIR -13 249 78 332 209 124 57 chr1 16105934 16106039 -226558314 - MIR SINE MIR -13 249 138 418 289 87 7 chr1 16107559 16107708 -226556645 - MIR SINE MIR -85 177 17 405 244 152 0 chr1 16107814 16107974 -226556379 - MIR SINE MIR -62 146 12 1251 93 0 0 chr1 16109504 16109654 -226554699 + AluSq/x SINE Alu 1 150 -162 216 341 33 0 chr1 16110298 16110389 -226553964 + (TGGA)n Simple_repeat Simple_repeat 1 94 0 234 339 0 0 chr1 16110462 16110524 -226553829 + (TGGG)n Simple_repeat Simple_repeat 4 65 0 525 188 20 0 chr1 16110555 16110704 -226553649 + (TGGA)n Simple_repeat Simple_repeat 2 153 0 212 100 25 0 chr1 16110745 16110785 -226553568 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 186 103 0 0 chr1 16110835 16110864 -226553489 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 206 152 0 22 chr1 16110909 16110955 -226553398 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 352 297 125 10 chr1 16110957 16111245 -226553108 - L2 LINE L2 0 3313 2933 2198 136 7 0 chr1 16111261 16111570 -226552783 - AluSx SINE Alu 0 312 2 1025 131 0 0 chr1 16111571 16111708 -226552645 - AluSq/x SINE Alu -175 137 1 28 38 0 19 chr1 16111713 16111735 -226552618 + AT_rich Low_complexity Low_complexity 1 22 -30 2067 140 0 23 chr1 16111735 16111892 -226552461 - AluSx SINE Alu -19 293 134 378 0 0 0 chr1 16111892 16111934 -226552419 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1912 100 81 0 chr1 16111934 16112193 -226552160 - AluSc SINE Alu -29 280 1 2067 140 0 23 chr1 16112193 16112334 -226552019 - AluSx SINE Alu -176 136 1 28 38 0 19 chr1 16112334 16112364 -226551989 + AT_rich Low_complexity Low_complexity 22 52 0 1956 153 3 3 chr1 16112364 16112651 -226551702 - AluJo SINE Alu -23 289 3 207 333 16 0 chr1 16112653 16112716 -226551637 + MER91B DNA MER1_type 1 64 -126 301 164 173 19 chr1 16112723 16112844 -226551509 + LTR50 LTR ERVL 388 770 -9 943 259 132 45 chr1 16112906 16113196 -226551157 - L2 LINE L2 -4 3309 2977 2277 109 0 16 chr1 16113196 16113499 -226550854 + AluSx SINE Alu 1 298 -14 943 259 132 45 chr1 16113499 16113586 -226550767 - L2 LINE L2 -336 2977 2899 414 259 143 79 chr1 16113619 16113885 -226550468 - L2 LINE L2 -495 2819 2537 180 152 0 0 chr1 16113910 16113943 -226550410 + (TGGG)n Simple_repeat Simple_repeat 2 34 0 2363 80 27 0 chr1 16116234 16116534 -226547819 - AluSx SINE Alu -4 308 1 293 275 50 42 chr1 16116691 16116811 -226547542 - MIR SINE MIR -14 248 128 483 256 107 18 chr1 16117652 16117820 -226546533 - MIR SINE MIR -1 261 79 2452 100 0 0 chr1 16117980 16118289 -226546064 - AluSx SINE Alu -1 311 3 991 145 180 30 chr1 16118291 16118491 -226545862 + AluJo SINE Alu 67 296 -16 450 260 0 0 chr1 16118500 16118596 -226545757 - MER45 DNA AcHobo -79 99 4 2150 128 13 3 chr1 16120026 16120330 -226544023 + AluSx SINE Alu 1 307 -5 721 280 85 19 chr1 16120356 16120731 -226543622 + MLT1J1 LTR MaLR 47 446 0 243 247 54 11 chr1 16121664 16121757 -226542596 - MIR3 SINE MIR -25 183 87 181 351 0 0 chr1 16122113 16122170 -226542183 - L2 LINE L2 -79 3193 3137 328 318 57 36 chr1 16122336 16122528 -226541825 - MIR SINE MIR -7 255 60 1965 132 110 27 chr1 16122778 16123096 -226541257 + MSTD LTR MaLR 1 354 -42 2238 105 7 13 chr1 16123096 16123401 -226540952 + AluSx SINE Alu 1 303 -9 1965 132 110 27 chr1 16123401 16123447 -226540906 + MSTD LTR MaLR 354 395 -1 847 160 0 8 chr1 16123526 16123657 -226540696 - FLAM_C SINE Alu -13 130 1 2407 65 31 0 chr1 16123709 16124002 -226540351 - AluSp SINE Alu -11 302 1 594 316 53 16 chr1 16124379 16124623 -226539730 - MIR SINE MIR 0 262 10 2348 91 20 0 chr1 16124656 16124953 -226539400 - AluSq SINE Alu -10 303 1 21 57 0 0 chr1 16124965 16125000 -226539353 + AT_rich Low_complexity Low_complexity 1 35 0 185 308 13 13 chr1 16125265 16125343 -226539010 + MIR SINE MIR 171 248 -14 204 295 16 0 chr1 16126400 16126461 -226537892 + MIR SINE MIR 108 169 -93 192 301 44 44 chr1 16126523 16126636 -226537717 - MIR3 SINE MIR -26 182 70 180 0 0 0 chr1 16126652 16126672 -226537681 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 253 179 125 0 chr1 16126690 16126746 -226537607 - L2 LINE L2 -60 3212 3150 358 228 106 90 chr1 16126982 16127153 -226537200 - MIR SINE MIR -33 229 49 2120 138 10 16 chr1 16127153 16127465 -226536888 + AluJb SINE Alu 1 310 -2 358 228 106 90 chr1 16127465 16127511 -226536842 - MIR SINE MIR -213 49 5 900 144 8 0 chr1 16128011 16128143 -226536210 + AluJb SINE Alu 1 133 -179 2105 94 8 0 chr1 16128146 16128413 -226535940 + AluSx SINE Alu 1 269 -43 2029 84 16 53 chr1 16128423 16128490 -226535863 + MER4A LTR ERV1 356 424 -240 2207 100 0 30 chr1 16128490 16128791 -226535562 - AluSc SINE Alu -17 292 1 2029 84 16 53 chr1 16128791 16129044 -226535309 + MER4A LTR ERV1 424 664 0 1186 173 88 22 chr1 16129135 16129407 -226534946 - MLT1B LTR MaLR 0 390 101 1736 164 3 33 chr1 16129407 16129575 -226534778 - AluJb SINE Alu -13 299 142 2464 89 0 10 chr1 16129575 16129889 -226534464 - AluSq SINE Alu 0 313 3 1736 164 3 33 chr1 16129889 16130024 -226534329 - AluJb SINE Alu -170 142 5 189 0 0 0 chr1 16130037 16130058 -226534295 + (T)n Simple_repeat Simple_repeat 1 21 0 525 133 95 48 chr1 16130447 16130552 -226533801 - MLT1B LTR MaLR -280 110 1 2482 90 0 0 chr1 16130808 16131107 -226533246 - AluSc SINE Alu -10 299 1 207 250 94 0 chr1 16131541 16131605 -226532748 + L2 LINE L2 1887 1956 -1358 1274 237 30 46 chr1 16132382 16132753 -226531600 + MLT1A1 LTR MaLR 1 365 0 256 303 134 2 chr1 16133625 16133765 -226530588 - MIR SINE MIR -65 143 25 227 310 65 58 chr1 16133770 16133925 -226530428 - L3 LINE CR1 -8 1569 1414 2100 136 10 0 chr1 16134297 16134592 -226529761 - AluSx SINE Alu -14 298 1 345 262 123 0 chr1 16134677 16134799 -226529554 - MIR SINE MIR -25 237 101 1797 157 17 11 chr1 16135192 16135479 -226528874 - AluJb SINE Alu -16 296 8 2346 92 7 0 chr1 16135488 16135780 -226528573 - AluSg SINE Alu -16 294 1 211 273 15 0 chr1 16136380 16136446 -226527907 + GA-rich Low_complexity Low_complexity 5 71 0 183 184 0 0 chr1 16138761 16138799 -226525554 + A-rich Low_complexity Low_complexity 1 38 0 206 32 32 0 chr1 16139447 16139478 -226524875 + (TA)n Simple_repeat Simple_repeat 1 32 0 264 243 68 68 chr1 16140808 16140911 -226523442 - L2 LINE L2 -2 3270 3168 197 365 77 6 chr1 16142916 16143072 -226521281 + MIR SINE MIR 77 243 -19 200 83 0 28 chr1 16143898 16143934 -226520419 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2057 128 14 0 chr1 16144316 16144597 -226519756 - AluSx SINE Alu -11 301 17 603 211 61 14 chr1 16145958 16146105 -226518248 + MIR SINE MIR 97 250 -12 2255 120 0 0 chr1 16146662 16146954 -226517399 - AluSx SINE Alu -15 297 6 1941 181 7 0 chr1 16147325 16147635 -226516718 - AluJo SINE Alu 0 312 1 1788 180 0 10 chr1 16147713 16148018 -226516335 - AluJo SINE Alu -10 302 1 2230 137 0 6 chr1 16148461 16148774 -226515579 + AluSx SINE Alu 2 312 0 460 227 0 0 chr1 16148908 16148996 -226515357 - MER3 DNA MER1_type -118 91 4 614 201 70 100 chr1 16149139 16149188 -226515165 - MIR SINE MIR -2 260 211 2309 107 3 3 chr1 16149188 16149487 -226514866 - AluSx SINE Alu -13 299 1 614 201 70 100 chr1 16149487 16149666 -226514687 - MIR SINE MIR -51 211 39 1684 176 0 35 chr1 16149667 16149980 -226514373 - AluJo SINE Alu -5 307 6 2261 85 3 29 chr1 16150683 16150990 -226513363 - AluY SINE Alu -12 299 1 203 161 0 0 chr1 16151150 16151181 -226513172 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 650 193 8 0 chr1 16151181 16151300 -226513053 - FLAM_A SINE Alu -13 120 1 1442 146 77 0 chr1 16151407 16151627 -226512726 + AluSx SINE Alu 5 241 -71 1802 144 0 43 chr1 16151679 16151978 -226512375 - AluJb SINE Alu -15 297 12 1964 78 78 8 chr1 16152159 16152427 -226511926 + AluY SINE Alu 1 287 -24 1981 93 4 7 chr1 16152462 16152731 -226511622 + AluSq SINE Alu 45 312 -1 221 0 0 33 chr1 16152735 16152765 -226511588 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2300 119 0 0 chr1 16152786 16153089 -226511264 - AluSq SINE Alu -10 303 1 2275 84 11 0 chr1 16154083 16154369 -226509984 - AluSp SINE Alu -24 289 1 303 285 46 15 chr1 16154434 16154564 -226509789 - MIR SINE MIR -4 258 125 432 209 22 36 chr1 16155148 16155287 -226509066 - LTR37B LTR ERV1 -2 466 330 403 184 0 15 chr1 16155313 16155389 -226508964 + FRAM/FAM SINE Alu 1 67 -99 1526 104 45 0 chr1 16157660 16157782 -226506571 + AluSp SINE Alu 1 137 -176 204 97 0 0 chr1 16157782 16157813 -226506540 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1526 104 45 0 chr1 16157813 16157892 -226506461 + AluSp SINE Alu 137 211 -102 1497 93 5 16 chr1 16157892 16158086 -226506267 - AluSg SINE Alu -117 193 2 1627 154 61 11 chr1 16158086 16158365 -226505988 - AluSx SINE Alu -17 295 3 647 165 218 0 chr1 16158367 16158500 -226505853 - AluSg/x SINE Alu -16 296 135 2278 84 3 0 chr1 16158507 16158803 -226505550 - AluSp SINE Alu -16 297 1 1524 176 22 4 chr1 16158812 16159134 -226505219 - AluSx SINE Alu 0 327 1 1030 109 142 6 chr1 16159135 16159318 -226505035 - MSTC LTR MaLR -220 208 1 922 143 0 0 chr1 16159535 16159699 -226504654 + FLAM_C SINE Alu 1 164 0 369 0 0 0 chr1 16159730 16159771 -226504582 + (CA)n Simple_repeat Simple_repeat 2 42 0 634 256 184 40 chr1 16159782 16160199 -226504154 - L2 LINE L2 -19 3294 2791 480 48 0 0 chr1 16160218 16160281 -226504072 + (TG)n Simple_repeat Simple_repeat 2 64 0 2040 91 0 0 chr1 16160294 16160559 -226503794 - AluSq SINE Alu -48 265 1 198 321 35 22 chr1 16160565 16160682 -226503671 + L2 LINE L2 2825 2937 -335 2086 97 3 53 chr1 16160835 16161154 -226503199 + AluSx SINE Alu 1 303 -9 2277 73 3 0 chr1 16161247 16161535 -226502818 - AluSp SINE Alu -22 291 3 197 257 275 18 chr1 16162073 16162182 -226502171 - MIR SINE MIR -62 200 64 1567 223 43 80 chr1 16162459 16162577 -226501776 + L1ME3 LINE L1 5656 5777 -385 1911 135 7 7 chr1 16162577 16162873 -226501480 + AluJb SINE Alu 1 296 -16 1567 223 43 80 chr1 16162873 16163041 -226501312 + L1ME3 LINE L1 5777 5950 -212 1463 175 18 11 chr1 16163041 16163315 -226501038 + AluJo SINE Alu 36 311 -1 1567 223 43 80 chr1 16163315 16163543 -226500810 + L1ME3 LINE L1 5950 6152 -10 2137 103 3 3 chr1 16163567 16163868 -226500485 - AluSc SINE Alu -8 301 1 1552 193 0 22 chr1 16164317 16164633 -226499720 + AluJo SINE Alu 4 312 0 1335 126 192 12 chr1 16164705 16164960 -226499393 + AluSx SINE Alu 1 301 -11 2383 71 3 0 chr1 16165078 16165388 -226498965 + AluY SINE Alu 1 311 0 218 282 14 14 chr1 16165946 16166017 -226498336 + L3b LINE CR1 1174 1244 -339 22 0 0 0 chr1 16166390 16166412 -226497941 + AT_rich Low_complexity Low_complexity 1 22 0 2146 121 3 0 chr1 16166421 16166726 -226497627 + AluSx SINE Alu 1 306 -6 1859 147 0 3 chr1 16166737 16167030 -226497323 + AluJb SINE Alu 1 292 -20 2400 70 3 3 chr1 16167053 16167366 -226496987 + AluSp SINE Alu 1 313 0 2172 81 10 23 chr1 16167744 16168054 -226496299 - AluSp SINE Alu -7 306 1 706 177 39 8 chr1 16168301 16168431 -226495922 + FAM SINE Alu 40 173 -12 2180 153 36 122 chr1 16168725 16168822 -226495531 + L1MC3 LINE L1 7197 7301 -484 1983 137 0 3 chr1 16168822 16169121 -226495232 - AluSx SINE Alu -9 303 6 2180 153 36 122 chr1 16169121 16169467 -226494886 + L1MC3 LINE L1 7301 7634 -151 365 40 40 0 chr1 16169467 16169517 -226494836 + MADE1 DNA Mariner 29 80 0 2180 153 36 122 chr1 16169517 16169603 -226494750 + L1MC3 LINE L1 7634 7726 -59 822 168 13 0 chr1 16169625 16169780 -226494573 + AluJb SINE Alu 154 310 -2 625 254 30 119 chr1 16169792 16169936 -226494417 + MIR SINE MIR 1 112 -150 2288 82 3 3 chr1 16169936 16170240 -226494113 - AluSp SINE Alu -9 304 1 625 254 30 119 chr1 16170240 16170363 -226493990 + MIR SINE MIR 112 244 -18 969 182 6 0 chr1 16170437 16170618 -226493735 - AluSg/x SINE Alu -1 311 130 1793 97 11 128 chr1 16170627 16170978 -226493375 - AluSx SINE Alu -2 310 1 2354 90 0 0 chr1 16171194 16171504 -226492849 - AluSx SINE Alu -2 310 1 713 195 0 0 chr1 16171541 16171659 -226492694 + FLAM_C SINE Alu 1 118 -15 217 291 9 82 chr1 16171665 16171677 -226492676 - MER5A DNA MER1_type -50 139 128 2299 84 0 0 chr1 16171677 16171975 -226492378 + AluSx SINE Alu 1 298 -14 217 291 9 82 chr1 16171975 16172072 -226492281 - MER5A DNA MER1_type -61 128 38 226 350 26 51 chr1 16172109 16172226 -226492127 - MIR3 SINE MIR -48 160 47 2296 80 7 0 chr1 16172473 16172773 -226491580 - AluSg1 SINE Alu -7 302 1 3399 258 153 37 chr1 16173248 16173528 -226490825 + L2 LINE L2 1395 1641 -1672 1797 122 7 24 chr1 16173528 16173664 -226490689 + AluSg SINE Alu 1 138 -177 2179 100 3 7 chr1 16173664 16173974 -226490379 + AluSp SINE Alu 1 309 -4 1797 122 7 24 chr1 16173974 16174157 -226490196 + AluSg SINE Alu 138 315 0 3399 258 153 37 chr1 16174157 16174283 -226490070 + L2 LINE L2 1641 1751 -1562 2036 91 0 0 chr1 16174283 16174546 -226489807 - AluSg SINE Alu -43 267 5 3399 258 153 37 chr1 16174546 16174836 -226489517 + L2 LINE L2 1751 2006 -1307 1267 161 74 74 chr1 16174836 16175147 -226489206 - AluJo SINE Alu -1 311 1 3399 258 153 37 chr1 16175147 16175216 -226489137 + L2 LINE L2 2006 2066 -1247 1937 128 54 35 chr1 16175216 16175584 -226488769 - THE1C LTR MaLR 0 375 1 3399 258 153 37 chr1 16175584 16176521 -226487832 + L2 LINE L2 2066 3313 0 686 125 6 150 chr1 16176567 16176727 -226487626 - FLAM_C SINE Alu -5 138 2 741 120 103 0 chr1 16176781 16176898 -226487455 + AluSq/x SINE Alu 2 130 -183 1379 109 35 5 chr1 16176927 16177136 -226487217 + AluSq SINE Alu 87 288 -328 2127 94 27 0 chr1 16177136 16177433 -226486920 + AluSc SINE Alu 1 305 -4 1379 109 35 5 chr1 16177433 16177451 -226486902 + AluSq SINE Alu 288 616 0 212 353 52 29 chr1 16177518 16177654 -226486699 + L2 LINE L2 2376 2514 -800 1976 147 0 0 chr1 16177654 16177953 -226486400 + AluSx SINE Alu 1 299 -13 1259 195 10 53 chr1 16178100 16178403 -226485950 + AluJo SINE Alu 9 298 -14 187 26 0 79 chr1 16178645 16178683 -226485670 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1120 134 102 5 chr1 16178714 16178900 -226485453 + AluJo SINE Alu 86 289 -23 274 211 263 18 chr1 16178904 16179018 -226485335 + L2 LINE L2 3079 3220 -93 1432 179 53 68 chr1 16179228 16179388 -226484965 + MLT1A2 LTR MaLR 1 162 -212 2087 104 35 0 chr1 16179388 16179676 -226484677 + AluSx SINE Alu 1 298 -14 1432 179 53 68 chr1 16179676 16179895 -226484458 + MLT1A2 LTR MaLR 162 374 0 1773 165 7 3 chr1 16180349 16180658 -226483695 - AluSx SINE Alu 0 312 3 1865 142 3 3 chr1 16180662 16180950 -226483403 - AluJo SINE Alu -24 288 1 198 191 0 0 chr1 16181248 16181290 -226483063 + CT-rich Low_complexity Low_complexity 3 44 0 1226 163 117 32 chr1 16181292 16181575 -226482778 - AluJb SINE Alu -5 307 1 520 204 0 0 chr1 16181890 16181983 -226482370 + AluJ/FRAM SINE Alu 216 308 -4 1703 100 104 0 chr1 16182139 16182399 -226481954 - AluSx SINE Alu -25 287 1 189 0 0 0 chr1 16182405 16182426 -226481927 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 353 333 0 20 chr1 16182811 16182913 -226481440 - MIR SINE MIR -90 118 19 2327 90 0 7 chr1 16184361 16184671 -226479682 - AluSx SINE Alu -4 308 1 198 71 0 0 chr1 16185232 16185260 -226479093 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2465 71 0 0 chr1 16185348 16185658 -226478695 + AluSg SINE Alu 1 310 0 1920 130 3 20 chr1 16185921 16186222 -226478131 - AluSx SINE Alu -16 296 1 2252 72 0 20 chr1 16186558 16186864 -226477489 + AluY SINE Alu 1 300 -11 2162 97 3 3 chr1 16186922 16187222 -226477131 + AluSx SINE Alu 1 300 -12 2282 88 0 0 chr1 16187492 16187788 -226476565 - AluSx SINE Alu -16 296 1 2215 98 3 3 chr1 16187983 16188289 -226476064 - AluSg SINE Alu -4 306 1 2214 84 0 3 chr1 16188634 16188921 -226475432 - AluSc SINE Alu -23 286 1 2150 105 3 3 chr1 16189872 16190177 -226474176 - AluSx SINE Alu -7 305 1 1986 131 0 25 chr1 16190359 16190679 -226473674 + AluSx SINE Alu 1 312 0 26 30 0 0 chr1 16190775 16190808 -226473545 + AT_rich Low_complexity Low_complexity 1 33 0 372 175 0 0 chr1 16190811 16190868 -226473485 - AluJ/FLAM SINE Alu -202 100 44 228 313 36 36 chr1 16190879 16190991 -226473362 - MIR SINE MIR -56 206 95 537 210 36 58 chr1 16191240 16191295 -226473058 + AluJo SINE Alu 2 57 -255 1821 136 53 56 chr1 16191295 16191492 -226472861 - THE1C LTR MaLR 0 375 178 2185 98 0 0 chr1 16191492 16191788 -226472565 - AluSx SINE Alu -16 296 1 1821 136 53 56 chr1 16191788 16191965 -226472388 - THE1C LTR MaLR -197 178 2 537 210 36 58 chr1 16191965 16192047 -226472306 + AluJo SINE Alu 57 136 -176 365 259 46 0 chr1 16192271 16192379 -226471974 - MER20 DNA MER1_type 0 219 107 2185 87 0 42 chr1 16192547 16192722 -226471631 - AluSq SINE Alu -14 299 141 1484 89 9 36 chr1 16192722 16192947 -226471406 - AluY SINE Alu -10 301 83 2185 87 0 42 chr1 16192947 16193083 -226471270 - AluSq SINE Alu -172 141 1 2066 115 7 13 chr1 16193092 16193397 -226470956 - AluSq SINE Alu -10 303 1 2152 99 14 0 chr1 16193665 16193957 -226470396 + AluSx SINE Alu 1 296 -16 1743 169 0 10 chr1 16194081 16194382 -226469971 + AluJo SINE Alu 1 298 -14 1713 155 17 10 chr1 16194412 16194709 -226469644 + AluJb SINE Alu 1 299 -13 2252 84 13 0 chr1 16194997 16195295 -226469058 - AluSg SINE Alu -8 302 1 209 273 0 0 chr1 16195559 16195603 -226468750 + L2 LINE L2 3216 3259 -13 853 181 29 23 chr1 16195673 16195844 -226468509 - AluJ SINE Alu -7 305 134 1967 132 37 0 chr1 16195875 16196170 -226468183 - AluSx SINE Alu -6 306 1 1666 154 0 38 chr1 16196195 16196514 -226467839 + AluJo SINE Alu 1 307 -5 2259 197 66 29 chr1 16196570 16197130 -226467223 + L1MC1 LINE L1 4264 4851 -1295 852 155 0 16 chr1 16197130 16197259 -226467094 - AluJ SINE Alu -175 127 1 2259 197 66 29 chr1 16197259 16197316 -226467037 + L1MC1 LINE L1 4851 4904 -1242 896 192 13 0 chr1 16197316 16197472 -226466881 + FAM SINE Alu 1 158 -17 1017 178 13 56 chr1 16197473 16197704 -226466649 - AluJb SINE Alu -7 305 85 2133 116 7 0 chr1 16197719 16198021 -226466332 - AluSx SINE Alu -8 304 1 2218 91 0 38 chr1 16198036 16198355 -226465998 - AluSc SINE Alu -2 307 1 557 267 104 0 chr1 16198371 16198592 -226465761 + L1MC1 LINE L1 4889 5132 -1014 1532 162 0 57 chr1 16198592 16198741 -226465612 + AluJb SINE Alu 1 126 -186 1737 130 9 68 chr1 16198741 16198892 -226465461 + AluSx SINE Alu 1 125 -187 2406 60 3 0 chr1 16198892 16199190 -226465163 + AluY SINE Alu 1 299 -12 1737 130 9 68 chr1 16199190 16199360 -226464993 + AluSx SINE Alu 125 303 -9 1532 162 0 57 chr1 16199360 16199507 -226464846 + AluJb SINE Alu 126 280 -32 818 158 9 108 chr1 16199517 16199691 -226464662 + L1MC1 LINE L1 5127 5276 -870 1181 121 181 107 chr1 16199691 16199972 -226464381 + AluSx SINE Alu 1 302 0 818 158 9 108 chr1 16199972 16200019 -226464334 + L1MC1 LINE L1 5276 5326 -820 896 117 97 0 chr1 16200024 16200169 -226464184 + AluY SINE Alu 136 294 -17 1711 159 19 35 chr1 16200179 16200482 -226463871 + AluJo SINE Alu 1 300 -12 309 51 0 0 chr1 16200482 16200521 -226463832 + (TA)n Simple_repeat Simple_repeat 1 39 0 5910 135 21 34 chr1 16200531 16201055 -226463298 + L1MC1 LINE L1 5323 5852 -481 1480 192 7 17 chr1 16201055 16201346 -226463007 + AluJb SINE Alu 1 288 -24 5910 135 21 34 chr1 16201346 16201766 -226462587 + L1MC1 LINE L1 5852 6256 -77 1950 145 0 0 chr1 16201766 16202070 -226462283 - AluSx SINE Alu -5 307 4 5910 135 21 34 chr1 16202070 16202146 -226462207 + L1MC1 LINE L1 6256 6331 -2 348 320 23 64 chr1 16202243 16202415 -226461938 + HAL1b LINE L1 1 3199 -1183 1995 91 15 0 chr1 16202954 16203228 -226461125 - AluSx SINE Alu -34 278 1 468 290 188 10 chr1 16203357 16203564 -226460789 + MIR SINE MIR 19 262 0 2029 82 0 0 chr1 16203618 16203886 -226460467 + AluY SINE Alu 38 305 -6 2234 103 6 0 chr1 16204867 16205178 -226459175 + AluSp SINE Alu 1 313 0 1406 130 10 5 chr1 16205223 16205430 -226458923 + MER75 DNA T2_type 1 208 -306 1645 119 4 0 chr1 16205431 16205667 -226458686 + AluSx SINE Alu 1 237 -75 398 326 91 11 chr1 16205875 16206050 -226458303 - MIR3 SINE MIR -4 204 16 754 253 88 4 chr1 16206102 16206351 -226458002 + L1MC4a LINE L1 5742 6011 -1797 2116 108 0 25 chr1 16206432 16206747 -226457606 + AluSg SINE Alu 1 307 -3 2236 83 3 3 chr1 16206801 16207101 -226457252 + AluSp SINE Alu 1 300 -13 1688 176 10 20 chr1 16207107 16207227 -226457126 + AluJb SINE Alu 1 121 -191 2549 76 3 0 chr1 16207227 16207530 -226456823 + AluSp SINE Alu 1 304 -9 1688 176 10 20 chr1 16207530 16207711 -226456642 + AluJb SINE Alu 121 299 -13 1145 108 48 0 chr1 16207795 16207981 -226456372 + MSTB2 LTR MaLR 1 195 -262 643 119 28 0 chr1 16208093 16208202 -226456151 + AluSg/x SINE Alu 200 311 -1 1999 139 0 17 chr1 16208205 16208522 -226455831 + AluJb SINE Alu 2 313 0 1199 234 134 45 chr1 16208745 16209215 -226455138 + MLT1K LTR MaLR 73 584 -4 228 309 36 18 chr1 16209684 16209794 -226454559 - MIR SINE MIR -76 132 20 435 245 9 0 chr1 16209860 16209966 -226454387 + MER103 DNA DNA 2 108 -58 2414 97 0 0 chr1 16210138 16210480 -226453873 - AluSx SINE Alu 0 342 1 370 293 93 21 chr1 16210947 16211087 -226453266 - MIR SINE MIR -78 184 35 4594 159 9 31 chr1 16211891 16212333 -226452020 - L1MB8 LINE L1 0 6178 5728 1900 156 9 40 chr1 16212333 16212654 -226451699 - AluJo SINE Alu -1 311 1 4594 159 9 31 chr1 16212654 16212910 -226451443 - L1MB8 LINE L1 -450 5728 5499 1776 179 4 0 chr1 16212910 16213211 -226451142 - AluJo SINE Alu 0 307 6 4594 159 9 31 chr1 16213211 16213384 -226450969 - L1MB8 LINE L1 -679 5499 5324 1693 144 0 0 chr1 16213384 16213627 -226450726 - AluSx SINE Alu -20 292 50 245 206 32 16 chr1 16214557 16214620 -226449733 + MER5B DNA MER1_type 1 64 -114 547 238 8 0 chr1 16214659 16214781 -226449572 - FLAM_C SINE Alu -19 124 2 2062 133 0 0 chr1 16214794 16215080 -226449273 - AluSx SINE Alu 0 312 27 912 130 34 7 chr1 16215090 16215236 -226449117 - FRAM SINE Alu -2 174 25 264 143 0 0 chr1 16215240 16215282 -226449071 + FRAM/FAM SINE Alu 32 73 -102 2127 113 10 10 chr1 16215407 16215707 -226448646 - AluSx SINE Alu -12 300 1 2441 79 3 19 chr1 16215863 16216178 -226448175 - AluSp SINE Alu -3 310 1 1642 188 10 7 chr1 16216283 16216581 -226447772 - AluJo SINE Alu -13 299 1 2484 131 58 94 chr1 16216712 16216880 -226447473 - MER4B LTR ERV1 -36 574 402 2180 118 7 0 chr1 16216880 16217176 -226447177 + AluSx SINE Alu 1 298 -14 2013 93 0 73 chr1 16217176 16217523 -226446830 + AluSg SINE Alu 1 325 0 2484 131 58 94 chr1 16217523 16217636 -226446717 - MER4B LTR ERV1 -207 403 288 1847 166 0 7 chr1 16217636 16217932 -226446421 + AluJb SINE Alu 1 294 -18 2484 131 58 94 chr1 16217932 16218213 -226446140 - MER4B LTR ERV1 -322 288 29 1795 122 8 0 chr1 16218313 16218590 -226445763 + AluSx SINE Alu 35 313 0 1083 95 0 0 chr1 16218618 16218755 -226445598 + AluSq/x SINE Alu 1 137 -176 2353 90 3 16 chr1 16218756 16219068 -226445285 + AluY SINE Alu 4 311 0 2232 98 3 16 chr1 16219463 16219770 -226444583 + AluSg SINE Alu 2 304 -6 212 289 0 0 chr1 16220282 16220334 -226444019 + L2 LINE L2 3030 3081 -191 2207 105 17 3 chr1 16220624 16220919 -226443434 + AluSq SINE Alu 1 299 -14 1466 121 77 73 chr1 16221510 16221782 -226442571 + AluSx SINE Alu 1 273 -39 612 40 0 0 chr1 16221789 16221864 -226442489 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 24 32 0 0 chr1 16223557 16223588 -226440765 + GC_rich Low_complexity Low_complexity 1 31 0 398 216 74 19 chr1 16223957 16224073 -226440280 - MIR SINE MIR -62 146 59 1060 135 0 0 chr1 16224205 16224346 -226440007 + AluJb SINE Alu 136 276 -36 467 296 122 14 chr1 16224681 16224894 -226439459 + MLT1K LTR MaLR 306 541 -47 1075 81 0 0 chr1 16224903 16225039 -226439314 - AluSg/x SINE Alu 0 310 175 2268 100 0 7 chr1 16225628 16225927 -226438426 + AluSx SINE Alu 15 311 -1 1670 190 28 0 chr1 16225965 16226254 -226438099 + AluJb SINE Alu 5 301 -11 529 226 10 0 chr1 16226257 16226359 -226437994 - MER45 DNA AcHobo -937 103 1 1412 143 0 28 chr1 16226647 16226863 -226437490 + AluSx SINE Alu 2 211 -101 761 188 0 83 chr1 16226864 16227082 -226437271 + AluJo SINE Alu 78 277 -35 289 248 239 0 chr1 16227296 16227409 -226436944 + MIR SINE MIR 98 237 -25 1137 157 0 0 chr1 16227538 16227710 -226436643 - AluSg/x SINE Alu -4 306 135 1583 149 33 83 chr1 16227740 16227887 -226436466 + MLT1B LTR MaLR 32 185 -205 1651 198 10 7 chr1 16227887 16228190 -226436163 + AluJo SINE Alu 1 304 -8 1583 149 33 83 chr1 16228190 16228404 -226435949 + MLT1B LTR MaLR 185 375 -15 2269 92 0 0 chr1 16228867 16229182 -226435171 - AluSg SINE Alu 0 317 3 1973 164 0 3 chr1 16229195 16229493 -226434860 - AluJo SINE Alu -15 297 1 2423 87 10 0 chr1 16230017 16230316 -226434037 + AluSx SINE Alu 1 302 -10 2077 117 3 20 chr1 16231679 16231841 -226432512 - AluJb SINE Alu -19 293 137 2241 125 0 0 chr1 16231841 16232137 -226432216 - AluSx SINE Alu -16 296 1 2077 117 3 20 chr1 16232137 16232272 -226432081 - AluJb SINE Alu -175 137 1 216 256 11 67 chr1 16232316 16232406 -226431947 + L2 LINE L2 3167 3251 -62 825 257 237 40 chr1 16232500 16232618 -226431735 + L2 LINE L2 1573 1666 -1648 1703 167 11 14 chr1 16232618 16232900 -226431453 - AluJo SINE Alu -21 291 11 825 257 237 40 chr1 16232900 16232935 -226431418 + L2 LINE L2 1666 1693 -1621 2270 93 0 0 chr1 16232935 16233249 -226431104 + AluY SINE Alu 1 314 0 825 257 237 40 chr1 16233249 16233847 -226430506 + L2 LINE L2 1693 2475 -839 2270 124 0 0 chr1 16233891 16234189 -226430164 - AluSx SINE Alu -14 298 1 2014 110 26 4 chr1 16234209 16234508 -226429845 - AluSc SINE Alu 0 305 1 317 87 0 0 chr1 16234513 16234559 -226429794 - FLAM_A SINE Alu -7 126 81 2602 167 28 2 chr1 16234559 16235020 -226429333 - L1MB2 LINE L1 -119 6052 5580 2340 119 3 0 chr1 16235027 16235337 -226429016 - AluSp SINE Alu 0 313 3 661 125 0 0 chr1 16235437 16235549 -226428804 + AluSp/q SINE Alu 202 313 0 321 314 0 39 chr1 16235839 16235941 -226428412 + L2 LINE L2 3214 3311 -2 193 339 34 0 chr1 16236081 16236140 -226428213 - L2 LINE L2 -220 3052 2992 1823 156 0 4 chr1 16236212 16236487 -226427866 + AluJo SINE Alu 9 282 -30 346 339 36 18 chr1 16236507 16236672 -226427681 - MIR SINE MIR 0 262 95 501 187 98 8 chr1 16236697 16236820 -226427533 - MIR3 SINE MIR -60 148 15 378 251 192 30 chr1 16237381 16237485 -226426868 - MIR SINE MIR -14 248 162 2280 92 34 0 chr1 16237485 16237778 -226426575 + AluSq SINE Alu 3 305 -8 378 251 192 30 chr1 16237778 16237876 -226426477 - MIR SINE MIR -100 162 13 180 320 0 0 chr1 16237906 16237956 -226426397 - MIR SINE MIR -12 250 201 567 296 73 15 chr1 16238031 16238237 -226426116 - MIR SINE MIR -21 241 24 252 130 0 0 chr1 16239954 16240000 -226424353 + (CAGGG)n Simple_repeat Simple_repeat 3 48 0 2101 131 0 0 chr1 16242822 16243104 -226421249 - AluSx SINE Alu -6 306 25 202 277 51 90 chr1 16243507 16243684 -226420669 + L3 LINE CR1 1183 1352 -225 478 279 6 31 chr1 16243830 16243991 -226420362 - MIR SINE MIR -4 258 102 412 321 24 6 chr1 16245954 16246119 -226418234 - MIR3 SINE MIR -3 205 38 253 284 0 0 chr1 16246794 16246861 -226417492 + L2 LINE L2 2703 2769 -545 258 236 118 27 chr1 16246936 16247046 -226417307 + L2 LINE L2 2941 3060 -212 567 218 271 0 chr1 16247725 16247895 -226416458 + MER20 DNA MER1_type 3 218 -1 249 318 47 0 chr1 16247970 16248055 -226416298 - L1MEc LINE L1 -3382 2833 2745 2090 54 70 0 chr1 16248056 16248190 -226416163 + AluY SINE Alu 1 124 -187 1518 60 0 50 chr1 16248190 16248391 -226415962 + AluY SINE Alu 1 191 -120 2090 54 70 0 chr1 16248391 16248515 -226415838 + AluY SINE Alu 124 277 -34 1660 69 10 0 chr1 16248525 16248729 -226415624 + AluY SINE Alu 105 310 -1 580 130 4 5 chr1 16248863 16249125 -226415228 + AluSx SINE Alu 10 309 -3 423 277 194 29 chr1 16249126 16249396 -226414957 - L1MEc LINE L1 -3709 2519 2263 2032 101 50 22 chr1 16249396 16249674 -226414679 + AluSx SINE Alu 1 286 -26 423 277 194 29 chr1 16249674 16249698 -226414655 - L1MEc LINE L1 -3965 2263 2244 252 263 162 22 chr1 16250723 16250858 -226413495 - MIR SINE MIR -69 193 40 736 136 23 15 chr1 16253411 16253543 -226410810 - FLAM_C SINE Alu 0 133 1 248 125 6 194 chr1 16253814 16253885 -226410468 + Charlie5 DNA MER1_type 2456 2482 -142 2571 77 0 0 chr1 16253885 16254195 -226410158 + AluSg SINE Alu 1 310 0 248 125 6 194 chr1 16254195 16254283 -226410070 + Charlie5 DNA MER1_type 2482 2585 -39 1791 184 10 10 chr1 16254284 16254653 -226409700 + AluJo SINE Alu 1 369 0 1871 119 0 4 chr1 16254673 16254934 -226409419 + AluSx SINE Alu 37 296 -16 2220 111 7 3 chr1 16255013 16255310 -226409043 + AluSx SINE Alu 6 303 -9 2365 101 3 0 chr1 16255316 16255614 -226408739 + AluSx SINE Alu 1 299 -13 2306 100 3 10 chr1 16255970 16256280 -226408073 - AluSx SINE Alu -4 308 1 2723 148 58 0 chr1 16256335 16256883 -226407470 - L1MB4 LINE L1 -1 6179 5600 217 0 0 0 chr1 16256886 16256910 -226407443 + (TTTTG)n Simple_repeat Simple_repeat 3 145 0 979 164 0 0 chr1 16256910 16257056 -226407297 - AluJb SINE Alu -1 305 137 481 198 121 0 chr1 16257058 16257174 -226407179 - L1MB4 LINE L1 -575 5605 5476 1898 149 0 49 chr1 16257178 16257506 -226406847 - AluJo SINE Alu 0 312 1 2300 106 7 0 chr1 16257517 16257810 -226406543 - AluSx SINE Alu -17 295 1 374 287 48 104 chr1 16257832 16258083 -226406270 - L2 LINE L2 -5 3267 3031 379 78 62 0 chr1 16258627 16258691 -226405662 + L1M4 LINE L1 4674 4741 -1405 222 37 0 0 chr1 16258691 16258718 -226405635 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 661 116 0 130 chr1 16258718 16258772 -226405581 - L1PB1 LINE L1 -9 6142 6083 2157 118 0 37 chr1 16258772 16259095 -226405258 - AluSx SINE Alu 0 312 2 661 116 0 130 chr1 16259095 16259175 -226405178 - L1PB1 LINE L1 -68 6083 6026 2248 113 3 3 chr1 16259175 16259475 -226404878 - AluSx SINE Alu -12 300 1 994 89 0 0 chr1 16259485 16259609 -226404744 - AluSg SINE Alu -186 124 1 703 191 64 5 chr1 16259609 16259797 -226404556 + L1M4 LINE L1 5134 5332 -814 856 218 6 0 chr1 16259800 16259956 -226404397 + FRAM SINE Alu 1 157 -9 2133 131 0 0 chr1 16259962 16260253 -226404100 + AluSx SINE Alu 1 291 -21 2295 115 7 0 chr1 16260400 16260705 -226403648 - AluSq SINE Alu -6 307 1 291 189 19 0 chr1 16261617 16261670 -226402683 + L2 LINE L2 3217 3270 -2 2464 78 0 0 chr1 16263718 16264014 -226400339 + AluSx SINE Alu 1 296 -16 2184 108 14 0 chr1 16264026 16264313 -226400040 + AluSp SINE Alu 1 291 -22 894 126 0 15 chr1 16264324 16264459 -226399894 + FLAM_C SINE Alu 1 133 0 548 249 81 23 chr1 16264459 16264632 -226399721 + MIR SINE MIR 79 261 -1 692 242 63 42 chr1 16264708 16264720 -226399633 + MIR SINE MIR 30 40 -222 2196 110 4 0 chr1 16264720 16265033 -226399320 + AluSx SINE Alu 2 315 0 692 242 63 42 chr1 16265033 16265235 -226399118 + MIR SINE MIR 40 256 -6 213 235 145 19 chr1 16265718 16265811 -226398542 + MIR SINE MIR 10 107 -102 426 167 0 0 chr1 16265811 16265883 -226398470 - AluSx SINE Alu -8 303 232 1573 81 0 0 chr1 16265883 16266069 -226398284 - AluSx SINE Alu -126 186 1 207 298 0 0 chr1 16266077 16266134 -226398219 + MIR SINE MIR 132 188 -74 262 211 41 14 chr1 16267030 16267177 -226397176 + GA-rich Low_complexity Low_complexity 4 154 0 475 275 14 63 chr1 16267588 16267795 -226396558 + MIR SINE MIR 60 256 -6 2414 105 0 0 chr1 16267828 16268132 -226396221 + AluSp SINE Alu 2 305 -8 412 179 45 167 chr1 16268223 16268379 -226395974 + MIR SINE MIR 12 148 -114 1174 73 0 0 chr1 16268384 16268520 -226395833 + AluSq/x SINE Alu 1 136 -176 1556 82 0 0 chr1 16268520 16268704 -226395649 + AluSc SINE Alu 21 204 -105 1140 144 80 5 chr1 16268932 16268966 -226395387 + AluSg/x SINE Alu 83 113 -195 396 0 0 0 chr1 16268966 16269010 -226395343 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1140 144 80 5 chr1 16269010 16269187 -226395166 + AluSg/x SINE Alu 113 308 0 894 148 0 15 chr1 16269194 16269329 -226395024 + FLAM_C SINE Alu 1 133 0 823 194 0 7 chr1 16269429 16269584 -226394769 + LTR2B LTR ERV1 337 490 0 286 217 48 61 chr1 16269666 16269775 -226394578 - MIR SINE MIR -43 165 50 2214 129 7 0 chr1 16270039 16270342 -226394011 + AluSx SINE Alu 1 305 -7 189 0 0 0 chr1 16270750 16270771 -226393582 + (A)n Simple_repeat Simple_repeat 1 21 0 672 227 74 51 chr1 16270818 16270997 -226393356 + MIR SINE MIR 42 228 -34 840 272 124 22 chr1 16270997 16271401 -226392952 + MLT1J1 LTR MaLR 1 445 -1 672 227 74 51 chr1 16271401 16271437 -226392916 + MIR SINE MIR 228 262 0 205 309 91 56 chr1 16271712 16271925 -226392428 - MIR SINE MIR 0 262 31 2334 95 0 0 chr1 16271928 16272250 -226392103 - AluSx SINE Alu 0 322 1 750 173 22 103 chr1 16272351 16272421 -226391932 - AluJo SINE Alu -139 173 99 1825 152 20 27 chr1 16272421 16272560 -226391793 + AluSx SINE Alu 1 139 -173 2255 100 3 10 chr1 16272560 16272861 -226391492 + AluSp SINE Alu 1 299 -14 1825 152 20 27 chr1 16272861 16273018 -226391335 + AluSx SINE Alu 139 295 -17 750 173 22 103 chr1 16273018 16273132 -226391221 - AluJo SINE Alu -213 99 4 300 322 185 0 chr1 16273185 16273331 -226391022 + L2 LINE L2 3103 3275 -38 1760 78 0 5 chr1 16273348 16273566 -226390787 + AluSg/x SINE Alu 84 300 -12 405 276 26 26 chr1 16273593 16273709 -226390644 - MIR SINE MIR -114 148 33 185 200 0 167 chr1 16273856 16273916 -226390437 - MIR SINE MIR -151 111 62 2207 68 57 0 chr1 16273924 16274204 -226390149 + AluY SINE Alu 1 296 -15 2096 115 35 0 chr1 16274300 16274588 -226389765 + AluSx SINE Alu 1 298 -14 2193 104 7 13 chr1 16274745 16275044 -226389309 + AluSx SINE Alu 7 303 -9 215 258 108 50 chr1 16275536 16275656 -226388697 - MIR SINE MIR -53 209 83 1823 129 79 7 chr1 16275737 16276015 -226388338 - AluSx SINE Alu -3 309 12 465 205 8 66 chr1 16276355 16276477 -226387876 + FLAM_A SINE Alu 1 115 -18 2361 103 0 0 chr1 16276502 16276803 -226387550 - AluSx SINE Alu -11 301 1 2045 121 14 3 chr1 16277714 16278011 -226386342 + AluSx SINE Alu 1 300 -12 2407 92 0 0 chr1 16278151 16278454 -226385899 + AluSg SINE Alu 1 303 -7 27 0 0 0 chr1 16278486 16278513 -226385840 + AT_rich Low_complexity Low_complexity 1 27 0 893 205 35 26 chr1 16278949 16279409 -226384944 + L1ME LINE L1 5129 5698 -466 2174 111 7 3 chr1 16279416 16279757 -226384596 + AluSp SINE Alu 1 313 0 739 172 16 0 chr1 16279760 16279888 -226384465 + AluJo/FLAM SINE Alu 1 130 -182 1134 78 26 0 chr1 16279888 16280041 -226384312 + BC200 scRNA scRNA 2 158 -42 251 261 0 14 chr1 16280216 16280285 -226384068 + MIR SINE MIR 59 126 -82 1823 140 49 0 chr1 16280515 16280800 -226383553 + AluSx SINE Alu 1 299 -13 308 269 0 0 chr1 16281583 16281650 -226382703 + L2 LINE L2 3247 3313 0 518 267 74 61 chr1 16281995 16282306 -226382047 + L1ME4a LINE L1 5573 5887 -234 2301 114 3 0 chr1 16282311 16282608 -226381745 + AluSq SINE Alu 1 298 -15 225 0 0 0 chr1 16282608 16282633 -226381720 + (TA)n Simple_repeat Simple_repeat 1 25 0 1976 160 0 0 chr1 16282633 16282939 -226381414 + AluJb SINE Alu 2 307 0 193 240 0 40 chr1 16283031 16283081 -226381272 + MIR SINE MIR 78 125 -137 813 160 8 0 chr1 16283143 16283268 -226381085 + FLAM_C SINE Alu 1 126 -17 815 130 8 8 chr1 16283754 16283877 -226380476 + FRAM SINE Alu 9 131 -45 2126 109 30 7 chr1 16283979 16284282 -226380071 + AluSq SINE Alu 1 310 -3 252 133 17 33 chr1 16284356 16284416 -226379937 + MER103 DNA DNA 12 70 -96 2063 171 36 16 chr1 16284604 16284989 -226379364 + MER70A LTR ERVL 80 472 0 2116 134 6 22 chr1 16285161 16285335 -226379018 - AluSq SINE Alu -4 309 141 2265 74 36 36 chr1 16285335 16285644 -226378709 - AluSq SINE Alu -4 309 1 2116 134 6 22 chr1 16285644 16285783 -226378570 - AluSq SINE Alu -172 141 1 2412 83 0 3 chr1 16286176 16286477 -226377876 - AluY SINE Alu -7 304 5 1710 144 96 0 chr1 16286481 16286751 -226377602 - AluSx SINE Alu -16 296 1 882 324 96 7 chr1 16286814 16287219 -226377134 - L2 LINE L2 0 3313 2873 1040 269 215 26 chr1 16287264 16287567 -226376786 - L2 LINE L2 -713 2601 2356 2137 112 14 10 chr1 16287567 16287861 -226376492 + AluSx SINE Alu 1 295 -17 1040 269 215 26 chr1 16287861 16288274 -226376079 - L2 LINE L2 -958 2356 1750 1017 144 69 0 chr1 16288287 16288447 -226375906 + AluJb SINE Alu 137 307 -5 370 249 305 30 chr1 16288476 16288975 -226375378 - L2 LINE L2 -1637 1677 1042 207 167 0 0 chr1 16289208 16289250 -226375103 + (CA)n Simple_repeat Simple_repeat 2 43 0 349 283 47 0 chr1 16289662 16289768 -226374585 - MIR SINE MIR -65 143 33 332 301 118 20 chr1 16290185 16290338 -226374015 - MIR SINE MIR -12 250 83 2015 148 3 7 chr1 16290418 16290716 -226373637 - AluJo SINE Alu -15 297 1 1835 153 27 17 chr1 16290789 16291083 -226373270 + AluSx SINE Alu 1 297 -15 1908 131 0 0 chr1 16291083 16291342 -226373011 + AluSx SINE Alu 44 303 -9 234 146 0 21 chr1 16291349 16291397 -226372956 + L1ME LINE L1 5772 5818 -348 1512 146 0 0 chr1 16291597 16291816 -226372537 + AluSg/x SINE Alu 82 300 -12 188 0 74 0 chr1 16291862 16291889 -226372464 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 544 184 0 29 chr1 16291889 16291983 -226372370 - AluJ SINE Alu -22 290 198 928 191 31 10 chr1 16292093 16292287 -226372066 - AluJ SINE Alu -114 198 1 433 116 14 0 chr1 16292436 16292505 -226371848 - MSTD LTR MaLR 0 396 327 2335 86 27 0 chr1 16292646 16292947 -226371406 + AluY SINE Alu 1 309 -2 2079 98 3 60 chr1 16292957 16293108 -226371245 + AluSx SINE Alu 1 126 -186 2256 125 0 3 chr1 16293108 16293467 -226370886 + AluSx SINE Alu 1 312 0 2079 98 3 60 chr1 16293467 16293633 -226370720 + AluSx SINE Alu 126 300 -12 572 144 52 0 chr1 16293640 16293737 -226370616 - MER7A DNA MER2_type -246 100 1 290 279 0 0 chr1 16293969 16294037 -226370316 + MIR SINE MIR 106 173 -89 246 283 28 47 chr1 16294103 16294209 -226370144 + L2 LINE L2 3132 3235 -78 2179 118 0 10 chr1 16294228 16294532 -226369821 + AluSx SINE Alu 1 301 -11 2550 64 0 0 chr1 16294536 16294834 -226369519 + AluY SINE Alu 1 298 -13 450 0 0 0 chr1 16295006 16295056 -226369297 + (TC)n Simple_repeat Simple_repeat 1 50 0 1530 50 0 0 chr1 16295550 16295560 -226368793 + (C)n Simple_repeat Simple_repeat 1 190 0 1530 50 0 0 chr1 16295560 16295740 -226368613 + (C)n Simple_repeat Simple_repeat 1 180 0 2147 118 4 0 chr1 16296293 16296602 -226367751 + AluSg SINE Alu 1 310 0 24 32 0 0 chr1 16296632 16296663 -226367690 + AT_rich Low_complexity Low_complexity 1 31 0 2126 141 0 0 chr1 16296837 16297141 -226367212 + AluSx SINE Alu 3 306 -6 594 186 20 0 chr1 16297182 16297284 -226367069 - FRAM SINE Alu -33 143 40 613 179 0 0 chr1 16297289 16297395 -226366958 - FLAM_A SINE Alu -19 123 18 641 188 339 80 chr1 16297451 16297690 -226366663 - AluJo SINE Alu 0 302 2 21 36 0 0 chr1 16297690 16297718 -226366635 + AT_rich Low_complexity Low_complexity 1 28 0 339 25 0 0 chr1 16298774 16298814 -226365539 + (GA)n Simple_repeat Simple_repeat 1 40 0 1590 141 0 24 chr1 16298986 16299151 -226365202 - AluSx SINE Alu -12 300 141 363 44 0 0 chr1 16299151 16299196 -226365157 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1590 141 0 24 chr1 16299196 16299278 -226365075 - AluSx SINE Alu -171 141 59 435 220 80 13 chr1 16299764 16299914 -226364439 - REP3 LTR ERV -401 161 2 301 188 78 0 chr1 16299915 16299979 -226364374 + MER45B DNA AcHobo 312 380 -660 1544 0 0 0 chr1 16300432 16300596 -226363757 - U1 snRNA snRNA -1 164 1 261 299 51 26 chr1 16300980 16301097 -226363256 - Charlie4 DNA MER1_type -4 1957 1838 3047 122 37 4 chr1 16301696 16302178 -226362175 + MER41E LTR ERV1 15 512 0 314 357 83 0 chr1 16302293 16302450 -226361903 + HAL1 LINE L1 527 696 -1811 2690 142 49 46 chr1 16302466 16303036 -226361317 - LTR8A LTR ERV1 0 727 156 946 160 16 27 chr1 16303048 16303236 -226361117 - MER1B DNA MER1_type -2 337 152 2499 314 48 51 chr1 16304114 16305030 -226359323 - PRIMA41-int LTR ERV1 -2056 5700 4819 2071 113 52 0 chr1 16305030 16305321 -226359032 - AluSx SINE Alu -6 306 1 2499 314 48 51 chr1 16305321 16306067 -226358286 - PRIMA41-int LTR ERV1 -2937 4819 4072 1748 91 0 0 chr1 16306067 16306288 -226358065 - AluY SINE Alu -90 221 1 532 258 195 21 chr1 16306356 16306482 -226357871 + L1MEc LINE L1 1704 1807 -4589 1825 163 6 31 chr1 16306482 16306802 -226357551 + AluSx SINE Alu 1 312 0 532 258 195 21 chr1 16306802 16306962 -226357391 + L1MEc LINE L1 1807 2040 -4356 445 177 105 57 chr1 16307178 16307302 -226357051 - FLAM_C SINE Alu -12 131 2 562 68 0 0 chr1 16307327 16307401 -226356952 - tRNA-Asn-AAC tRNA tRNA -3 74 1 1860 123 58 14 chr1 16308090 16308366 -226355987 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr1 16308366 16308387 -226355966 + AT_rich Low_complexity Low_complexity 1 21 0 343 206 0 0 chr1 16308435 16308503 -226355850 + tRNA-His-CAC tRNA tRNA 6 73 -2 610 204 73 0 chr1 16308997 16309134 -226355219 - U1 snRNA snRNA -14 151 5 579 40 0 0 chr1 16310261 16310335 -226354018 - tRNA-Glu-GAG tRNA tRNA -1 74 1 327 323 24 18 chr1 16310828 16310992 -226353361 + L2 LINE L2 2351 2515 -799 326 200 51 120 chr1 16311073 16311248 -226353105 - MER20 DNA MER1_type -56 163 1 1155 170 33 21 chr1 16312129 16312370 -226351983 - MLT1A1 LTR MaLR 0 365 122 2370 108 8 0 chr1 16312547 16312899 -226351454 - THE1A LTR MaLR 0 355 1 547 284 149 40 chr1 16312984 16313481 -226350872 + L1M4 LINE L1 4697 5247 -899 1961 64 54 50 chr1 16314942 16315250 -226349103 + AluY SINE Alu 1 309 0 416 288 146 25 chr1 16315578 16315751 -226348602 + L1ME3 LINE L1 4987 5198 -948 4601 182 19 11 chr1 16315751 16316663 -226347690 + MER49 LTR ERV1 5 923 0 416 288 146 25 chr1 16316663 16316729 -226347624 + L1ME3 LINE L1 5198 5255 -891 8352 46 3 0 chr1 16316730 16318579 -226345774 + L1PA4 LINE L1 4293 6151 -4 436 259 44 29 chr1 16318602 16318807 -226345546 + L1ME3 LINE L1 5264 5471 -703 552 156 0 0 chr1 16318807 16318897 -226345456 - AluJb SINE Alu -14 298 209 * 662 130 0 0 chr1 16318892 16318992 -226345361 - AluSg/x SINE Alu -131 179 80 307 311 155 0 chr1 16318995 16319143 -226345210 + L1ME3 LINE L1 5461 5631 -531 327 248 58 51 chr1 16319229 16319366 -226344987 + L1ME3 LINE L1 5831 5968 -196 614 220 30 129 chr1 16320217 16320249 -226344104 - MIR SINE MIR -18 244 210 1732 179 7 13 chr1 16320249 16320550 -226343803 + AluJo SINE Alu 1 299 -13 614 220 30 129 chr1 16320550 16320781 -226343572 - MIR SINE MIR -52 210 7 289 200 165 0 chr1 16321704 16321789 -226342564 + L1ME3 LINE L1 6034 6132 -30 559 177 0 0 chr1 16321817 16321913 -226342440 + AluSg/x SINE Alu 195 290 -22 334 232 0 0 chr1 16322366 16322435 -226341918 - tRNA-His-CAC tRNA tRNA -3 72 4 2214 110 10 0 chr1 16322687 16322979 -226341374 - AluSx SINE Alu -17 295 1 502 81 0 0 chr1 16323609 16323683 -226340670 - tRNA-Gly-GGG tRNA tRNA 0 74 1 430 206 0 0 chr1 16325329 16325402 -226338951 - tRNA-Val-GTG tRNA tRNA -3 73 1 1527 147 4 0 chr1 16326235 16326473 -226337880 + AluSg/x SINE Alu 68 306 -4 2169 88 29 0 chr1 16326785 16327109 -226337244 - AluSx SINE Alu 0 332 1 409 205 82 16 chr1 16327111 16327233 -226337120 - MIR SINE MIR -117 145 16 275 253 0 24 chr1 16327741 16327824 -226336529 + (CAGAGA)n Simple_repeat Simple_repeat 3 83 0 329 227 94 0 chr1 16328995 16329057 -226335296 + MIR SINE MIR 104 159 -103 2288 108 0 0 chr1 16329057 16329353 -226335000 - AluSx SINE Alu -16 296 1 329 227 94 0 chr1 16329353 16329403 -226334950 + MIR SINE MIR 159 231 -31 843 259 81 0 chr1 16329490 16329726 -226334627 + MIR SINE MIR 8 262 0 204 250 0 0 chr1 16329747 16329795 -226334558 + (TTA)n Simple_repeat Simple_repeat 3 50 0 276 294 64 18 chr1 16329796 16329905 -226334448 + MIR SINE MIR 58 171 -91 2475 76 0 3 chr1 16330745 16331048 -226333305 - AluY SINE Alu -7 304 3 2251 95 7 0 chr1 16331051 16331346 -226333007 - AluSx SINE Alu -15 297 1 225 239 9 28 chr1 16331444 16331553 -226332800 + T-rich Low_complexity Low_complexity 1 107 0 282 240 13 0 chr1 16332438 16332513 -226331840 - MIR SINE MIR -87 121 46 419 258 105 21 chr1 16332635 16332825 -226331528 + MIR SINE MIR 50 255 -7 309 234 0 39 chr1 16333144 16333221 -226331132 + MIR SINE MIR 78 151 -57 2299 114 7 0 chr1 16333289 16333596 -226330757 - AluSx SINE Alu -3 309 1 2186 132 0 3 chr1 16334100 16334410 -226329943 + AluSx SINE Alu 1 309 -3 703 144 22 65 chr1 16334419 16334558 -226329795 + FLAM_A SINE Alu 1 133 0 897 305 39 44 chr1 16334560 16334944 -226329409 + L1MC4a LINE L1 5429 5813 -1995 2371 49 0 14 chr1 16334944 16335253 -226329100 + AluY SINE Alu 1 305 0 897 305 39 44 chr1 16335253 16335326 -226329027 + L1MC4a LINE L1 5813 5885 -1923 192 135 0 0 chr1 16335375 16335412 -226328941 + (TG)n Simple_repeat Simple_repeat 1 37 0 2384 107 0 0 chr1 16335468 16335777 -226328576 + AluSx SINE Alu 1 309 -3 228 163 0 0 chr1 16335811 16335854 -226328499 + A-rich Low_complexity Low_complexity 1 43 0 856 187 7 26 chr1 16336060 16336215 -226328138 + AluJo SINE Alu 1 152 -160 248 362 0 0 chr1 16336364 16336458 -226327895 + MIR SINE MIR 165 258 -4 1853 160 45 0 chr1 16336675 16336963 -226327390 + AluJb SINE Alu 2 302 -10 816 152 0 0 chr1 16336970 16337095 -226327258 + FLAM_C SINE Alu 1 125 -8 374 192 293 0 chr1 16337118 16337217 -226327136 + MER3 DNA MER1_type 2 129 -80 2464 75 0 13 chr1 16337217 16337523 -226326830 - AluY SINE Alu -8 303 2 1580 121 0 14 chr1 16337524 16337747 -226326606 - AluSg/x SINE Alu -8 302 83 29 0 0 0 chr1 16337780 16337809 -226326544 + AT_rich Low_complexity Low_complexity 1 29 0 866 156 0 7 chr1 16337810 16337945 -226326408 + AluJo SINE Alu 1 134 -178 494 210 0 0 chr1 16338117 16338217 -226326136 + FRAM SINE Alu 38 137 -39 303 28 0 0 chr1 16338225 16338261 -226326092 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 1303 90 21 26 chr1 16338265 16338283 -226326070 + AluY SINE Alu 115 132 -179 2169 105 3 10 chr1 16338283 16338579 -226325774 + AluSg1 SINE Alu 1 294 -15 1303 90 21 26 chr1 16338579 16338749 -226325604 + AluY SINE Alu 132 302 -9 1786 98 0 29 chr1 16339932 16340178 -226324175 - AluSx SINE Alu -15 297 59 475 217 84 14 chr1 16340677 16340820 -226323533 - REP3 LTR ERV -408 154 2 292 203 78 0 chr1 16340821 16340885 -226323468 + MER45B DNA AcHobo 312 380 -660 1462 0 0 0 chr1 16341346 16341510 -226322843 - U1 snRNA snRNA -1 164 1 289 319 51 14 chr1 16341894 16342032 -226322321 - Charlie4 DNA MER1_type -4 1957 1815 3158 123 29 4 chr1 16342593 16343079 -226321274 + MER41E LTR ERV1 15 512 0 2740 145 49 47 chr1 16343363 16343937 -226320416 - LTR8A LTR ERV1 0 727 153 1913 150 9 18 chr1 16343945 16344285 -226320068 - MER1B DNA MER1_type -2 337 1 555 177 41 54 chr1 16344288 16344435 -226319918 - LTR8 LTR ERV1 -545 146 2 594 178 17 17 chr1 16344572 16344690 -226319663 + LTR49 LTR ERV1 35 152 -443 2512 193 14 24 chr1 16344705 16344862 -226319491 + MER72 LTR ERV1 1 158 -564 3790 98 47 23 chr1 16344862 16345022 -226319331 + MER51D LTR ERV1 1 156 -501 2553 77 0 3 chr1 16345022 16345334 -226319019 + AluSx SINE Alu 1 311 -1 3790 98 47 23 chr1 16345334 16345813 -226318540 + MER51D LTR ERV1 156 655 -2 2512 193 14 24 chr1 16345813 16346164 -226318189 + MER72 LTR ERV1 158 504 -218 325 299 23 89 chr1 16346167 16346381 -226317972 + L1ME LINE L1 5541 5740 -381 1236 122 0 6 chr1 16346396 16346560 -226317793 - AluSg/x SINE Alu -16 296 134 644 13 0 0 chr1 16347025 16347100 -226317253 - tRNA-Asn-AAC tRNA tRNA -2 75 1 336 286 83 30 chr1 16348183 16348351 -226316002 - L1ME LINE L1 -320 5801 5625 507 204 30 0 chr1 16348372 16348504 -226315849 - L1MEc LINE L1 -4258 2138 2003 534 277 108 10 chr1 16348552 16348866 -226315487 - L1MEc LINE L1 -4491 1905 1561 28 61 0 0 chr1 16348975 16349024 -226315329 + AT_rich Low_complexity Low_complexity 1 49 0 390 250 19 9 chr1 16350067 16350175 -226314178 - L2 LINE L2 -797 2517 2409 3057 146 29 22 chr1 16350215 16350806 -226313547 + LTR49 LTR ERV1 1 595 0 5606 141 73 61 chr1 16350808 16352003 -226312350 + LTR49-int LTR ERV1 1 1209 -5122 294 306 14 0 chr1 16352003 16352075 -226312278 + tRNA-Glu-GAG tRNA tRNA 3 75 0 438 60 30 130 chr1 16352080 16352156 -226312197 + LTR49-int LTR ERV1 1288 1353 -4978 2024 165 0 0 chr1 16352156 16352459 -226311894 - AluSx SINE Alu -7 305 3 438 60 30 130 chr1 16352459 16352482 -226311871 + LTR49-int LTR ERV1 1353 1377 -4954 2131 126 46 118 chr1 16352484 16352778 -226311575 - L1M4c LINE L1 -4820 1564 1323 2088 121 4 0 chr1 16352778 16353058 -226311295 + AluSp SINE Alu 1 281 -32 2131 126 46 118 chr1 16353058 16353286 -226311067 - L1M4c LINE L1 -5061 1323 1080 1498 106 0 0 chr1 16353971 16354205 -226310148 + AluSg/x SINE Alu 95 328 0 187 398 43 5 chr1 16354262 16354448 -226309905 + L3 LINE CR1 66 258 -1319 342 0 0 0 chr1 16354697 16354735 -226309618 + (T)n Simple_repeat Simple_repeat 1 38 0 357 340 27 27 chr1 16355208 16355358 -226308995 - MER5B DNA MER1_type -22 156 7 2278 94 0 32 chr1 16355619 16355928 -226308425 - AluY SINE Alu -12 299 1 1949 109 48 48 chr1 16356073 16356386 -226307967 + AluSp SINE Alu 1 313 0 184 396 104 7 chr1 16356586 16356730 -226307623 + MIR3 SINE MIR 44 201 -7 1761 312 68 27 chr1 16358040 16358953 -226305400 - PRIMA41-int LTR ERV1 -2057 5699 4750 1923 127 11 7 chr1 16358954 16359238 -226305115 - AluSx SINE Alu -6 306 22 2185 93 0 0 chr1 16359339 16359609 -226304744 - AluSx SINE Alu -42 270 1 2428 84 3 0 chr1 16361445 16361743 -226302610 - AluSp SINE Alu -14 299 1 1687 180 21 0 chr1 16362111 16362394 -226301959 + AluJb SINE Alu 1 289 -23 802 209 52 94 chr1 16362701 16363008 -226301345 + MER58B DNA MER1_type 48 341 0 332 321 15 15 chr1 16363956 16364090 -226300263 + MIR SINE MIR 79 212 -50 2185 100 0 14 chr1 16364298 16364589 -226299764 - AluSg1 SINE Alu -22 287 1 996 199 27 36 chr1 16364746 16364967 -226299386 - MER20 DNA MER1_type 0 219 1 2106 146 7 0 chr1 16365089 16365391 -226298962 + AluSx SINE Alu 3 306 -6 2339 99 3 3 chr1 16365391 16365693 -226298660 + AluSp SINE Alu 1 302 -11 1731 159 32 14 chr1 16365750 16366027 -226298326 + AluJo SINE Alu 1 282 -30 1205 161 54 93 chr1 16366027 16366243 -226298110 - AluJo SINE Alu -15 297 93 2485 86 0 0 chr1 16366243 16366544 -226297809 + AluSx SINE Alu 1 301 -11 1205 161 54 93 chr1 16366544 16366607 -226297746 - AluJo SINE Alu -219 93 29 198 240 53 40 chr1 16368360 16368435 -226295918 - MIR SINE MIR -113 95 20 374 250 198 96 chr1 16368752 16369076 -226295277 - L2 LINE L2 -2 3270 2914 228 67 0 0 chr1 16369326 16369356 -226294997 + (GGCTG)n Simple_repeat Simple_repeat 1 30 0 266 77 58 0 chr1 16369713 16369765 -226294588 + T-rich Low_complexity Low_complexity 2 56 0 292 234 0 99 chr1 16369811 16369922 -226294431 - MIR SINE MIR -73 135 36 2329 227 64 27 chr1 16370036 16370131 -226294222 - L1ME3A LINE L1 0 6170 6080 2182 87 3 17 chr1 16370131 16370441 -226293912 + AluSp SINE Alu 1 306 0 2329 227 64 27 chr1 16370441 16371080 -226293273 - L1ME3A LINE L1 -90 6080 5408 302 296 177 0 chr1 16371884 16372070 -226292283 - L2 LINE L2 -219 3053 2835 33 0 0 0 chr1 16372224 16372257 -226292096 + GC_rich Low_complexity Low_complexity 1 33 0 2322 107 3 10 chr1 16372565 16372874 -226291479 - AluSp SINE Alu -6 307 1 2270 110 0 0 chr1 16372961 16373252 -226291101 - AluSg SINE Alu -19 291 1 261 250 169 27 chr1 16373287 16373435 -226290918 - L2 LINE L2 -22 3291 3123 652 269 29 49 chr1 16373450 16373510 -226290843 + MIR SINE MIR 23 83 -179 2328 105 3 6 chr1 16373510 16373824 -226290529 - AluSp SINE Alu 0 313 1 2247 109 3 3 chr1 16373827 16374121 -226290232 - AluSx SINE Alu -18 294 1 652 269 29 49 chr1 16374121 16374301 -226290052 + MIR SINE MIR 85 262 0 380 279 162 13 chr1 16374303 16374457 -226289896 - MIR SINE MIR -7 255 79 2395 100 0 3 chr1 16375480 16375790 -226288563 - AluSq SINE Alu -4 309 1 926 209 0 22 chr1 16376178 16376194 -226288159 - MER58A DNA MER1_type -2196 224 209 1223 187 117 11 chr1 16376194 16376467 -226287886 - AluSg1 SINE Alu -7 302 1 926 209 0 22 chr1 16376467 16376632 -226287721 - MER58A DNA MER1_type -2211 209 47 2145 118 20 3 chr1 16376639 16376944 -226287409 + AluSq SINE Alu 1 310 -3 2976 95 62 28 chr1 16376969 16377168 -226287185 + MER75 DNA T2_type 1 192 -322 1963 153 10 7 chr1 16377168 16377476 -226286877 - AluJb SINE Alu -3 309 1 2976 95 62 28 chr1 16377476 16377773 -226286580 + MER75 DNA T2_type 192 514 0 1949 128 54 10 chr1 16377785 16378081 -226286272 + AluJb SINE Alu 1 309 -3 1608 165 12 77 chr1 16379961 16380072 -226284281 + AluJo SINE Alu 1 118 -194 2074 125 14 7 chr1 16380072 16380369 -226283984 - AluSx SINE Alu -13 299 1 1608 165 12 77 chr1 16380369 16380584 -226283769 + AluJo SINE Alu 118 306 -6 2109 126 27 0 chr1 16380874 16381167 -226283186 + AluSx SINE Alu 1 301 -11 1993 217 124 8 chr1 16381688 16382219 -226282134 + MLT1E LTR MaLR 1 593 0 271 236 55 73 chr1 16382344 16382454 -226281899 - MIR SINE MIR 0 262 155 2104 124 10 3 chr1 16382454 16382752 -226281601 - AluSx SINE Alu -12 300 1 936 156 167 0 chr1 16382762 16382948 -226281405 - MLT1A1 LTR MaLR 0 365 149 950 133 0 0 chr1 16382948 16383083 -226281270 - FLAM_C SINE Alu 0 143 9 1968 130 42 0 chr1 16383100 16383384 -226280969 - AluSq SINE Alu -17 296 1 630 192 34 48 chr1 16383384 16383530 -226280823 - MLT1A1 LTR MaLR -211 154 11 655 219 55 0 chr1 16383539 16383667 -226280686 - MIR SINE MIR -113 149 15 321 26 0 0 chr1 16383983 16384021 -226280332 + (T)n Simple_repeat Simple_repeat 1 38 0 2420 109 0 0 chr1 16384052 16384364 -226279989 - AluSq SINE Alu -1 312 1 763 235 131 68 chr1 16384364 16384802 -226279551 - MLT1E LTR MaLR -51 542 4 2025 108 29 4 chr1 16384803 16385082 -226279271 + AluSc SINE Alu 1 286 -23 1316 227 142 15 chr1 16385091 16385501 -226278852 - MLT1C LTR MaLR 0 467 6 342 307 45 69 chr1 16385518 16385720 -226278633 + L1MC4a LINE L1 5742 5938 -1870 1164 139 0 0 chr1 16385725 16385891 -226278462 + AluSg/x SINE Alu 135 300 -10 2013 147 3 0 chr1 16385891 16386176 -226278177 + AluSq SINE Alu 1 286 -27 367 79 51 64 chr1 16386295 16386379 -226277974 - FLAM_A SINE Alu 0 133 62 1364 173 0 9 chr1 16386434 16386648 -226277705 + AluJo SINE Alu 1 212 -100 355 317 49 62 chr1 16386750 16386993 -226277360 - L1ME LINE L1 -341 5780 5541 381 252 75 63 chr1 16387727 16387981 -226276372 - L1ME3 LINE L1 -326 5836 5580 2553 199 68 24 chr1 16388358 16388991 -226275362 - MER67B LTR ERV1 0 661 1 1140 223 36 13 chr1 16389500 16389831 -226274522 + MLT2B1 LTR ERVL 1 417 -103 372 94 0 0 chr1 16389831 16389884 -226274469 + (TG)n Simple_repeat Simple_repeat 2 54 0 3055 187 28 75 chr1 16390164 16390306 -226274047 - L1MD1 LINE L1 0 6242 6095 2328 95 0 0 chr1 16390306 16390618 -226273735 + AluY SINE Alu 1 312 0 3055 187 28 75 chr1 16390618 16391362 -226272991 - L1MD1 LINE L1 -147 6095 5397 266 100 0 80 chr1 16391364 16391414 -226272939 - MLT1B LTR MaLR -344 46 1 5966 225 62 25 chr1 16391414 16393542 -226270811 - L1MDa LINE L1 -3460 3080 871 21 0 0 0 chr1 16393817 16393838 -226270515 + GC_rich Low_complexity Low_complexity 1 21 0 251 253 38 13 chr1 16394046 16394125 -226270228 + MIR SINE MIR 41 121 -87 2016 125 35 0 chr1 16394156 16394466 -226269887 + AluSx SINE Alu 1 312 0 2176 91 29 0 chr1 16394759 16395087 -226269266 - AluSx SINE Alu 0 336 1 411 219 73 16 chr1 16395089 16395212 -226269141 - MIR SINE MIR -117 145 16 270 242 0 0 chr1 16395728 16395790 -226268563 + (CAGAGA)n Simple_repeat Simple_repeat 4 65 0 311 197 93 17 chr1 16396693 16396758 -226267595 + MIR SINE MIR 104 163 -99 2432 87 0 0 chr1 16396758 16397056 -226267297 - AluSx SINE Alu -14 298 1 311 197 93 17 chr1 16397056 16397106 -226267247 + MIR SINE MIR 163 231 -31 804 238 104 0 chr1 16397193 16397424 -226266929 + MIR SINE MIR 8 262 0 249 295 0 13 chr1 16397492 16397570 -226266783 + MIR SINE MIR 54 130 -78 2227 78 53 0 chr1 16398430 16398713 -226265640 - AluY SINE Alu -12 299 2 2018 128 0 4 chr1 16398715 16398988 -226265365 - AluSx SINE Alu -8 304 33 2157 105 36 13 chr1 16399048 16399354 -226264999 - AluSp SINE Alu 0 313 1 979 127 0 8 chr1 16399354 16399488 -226264865 - AluSq/x SINE Alu -178 135 3 29 0 0 0 chr1 16399534 16399563 -226264790 + AT_rich Low_complexity Low_complexity 1 29 0 721 165 0 8 chr1 16399564 16399685 -226264668 + FLAM_C SINE Alu 1 120 -23 239 362 0 0 chr1 16399879 16399973 -226264380 + MIR SINE MIR 165 258 -4 1765 97 108 8 chr1 16400198 16400457 -226263896 + AluSq SINE Alu 10 294 -19 2069 153 3 0 chr1 16400491 16400791 -226263562 + AluJb SINE Alu 2 302 -10 832 165 0 0 chr1 16400798 16400931 -226263422 + FLAM_C SINE Alu 1 133 0 381 192 293 0 chr1 16400962 16401061 -226263292 + MER3 DNA MER1_type 2 129 -80 2471 78 0 13 chr1 16401069 16401376 -226262977 - AluY SINE Alu 0 311 9 1431 142 0 21 chr1 16401376 16401600 -226262753 - AluSg/x SINE Alu -7 303 83 23 0 0 0 chr1 16401640 16401663 -226262690 + AT_rich Low_complexity Low_complexity 1 23 0 827 179 0 8 chr1 16401665 16401799 -226262554 + AluJo SINE Alu 2 134 -178 423 260 0 0 chr1 16401977 16402077 -226262276 + FRAM SINE Alu 38 137 -29 282 56 0 0 chr1 16402085 16402121 -226262232 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 1209 77 24 29 chr1 16402125 16402143 -226262210 + AluY SINE Alu 115 132 -176 2179 116 3 3 chr1 16402143 16402444 -226261909 + AluSg1 SINE Alu 1 301 -8 1209 77 24 29 chr1 16402444 16402620 -226261733 + AluY SINE Alu 132 308 0 253 267 23 0 chr1 16404531 16404617 -226259736 - MIR SINE MIR -75 133 46 435 229 133 9 chr1 16404705 16404929 -226259424 + MIR SINE MIR 3 255 -7 309 288 0 0 chr1 16405248 16405321 -226259032 + MIR SINE MIR 77 149 -113 1959 145 7 0 chr1 16405393 16405683 -226258670 - AluSx SINE Alu -7 305 14 2164 117 10 3 chr1 16406196 16406496 -226257857 + AluJb SINE Alu 1 302 -10 1020 213 126 92 chr1 16406526 16406945 -226257408 + L1MC5 LINE L1 7054 7457 -504 1965 141 30 3 chr1 16406945 16407243 -226257110 + AluSx SINE Alu 1 306 -6 1020 213 126 92 chr1 16407243 16407327 -226257026 + L1MC5 LINE L1 7457 7537 -424 2109 115 0 4 chr1 16407327 16407606 -226256747 - AluSx SINE Alu -20 292 15 1020 213 126 92 chr1 16407606 16407687 -226256666 + L1MC5 LINE L1 7537 7659 -302 1301 174 9 0 chr1 16407719 16407932 -226256421 + AluJb SINE Alu 21 235 -77 208 315 102 0 chr1 16408161 16408288 -226256065 + L2 LINE L2 2920 3059 -213 1747 116 31 12 chr1 16408498 16408788 -226255565 + AluSx SINE Alu 21 315 0 656 272 67 20 chr1 16408795 16408990 -226255363 + MIR SINE MIR 53 256 -6 195 235 145 19 chr1 16409473 16409566 -226254787 + MIR SINE MIR 10 107 -102 402 167 0 0 chr1 16409566 16409638 -226254715 - AluSx SINE Alu -8 304 233 1597 75 0 0 chr1 16409638 16409824 -226254529 - AluSx SINE Alu -126 186 1 202 298 0 0 chr1 16409832 16409889 -226254464 + MIR SINE MIR 132 188 -74 262 211 41 14 chr1 16410784 16410931 -226253422 + GA-rich Low_complexity Low_complexity 4 154 0 446 275 14 63 chr1 16411342 16411549 -226252804 + MIR SINE MIR 60 256 -6 2404 106 0 0 chr1 16411582 16411884 -226252469 + AluSp SINE Alu 2 303 -10 368 179 45 167 chr1 16411975 16412131 -226252222 + MIR SINE MIR 12 148 -114 1177 73 0 0 chr1 16412136 16412272 -226252081 + AluSq/x SINE Alu 1 136 -177 1558 82 0 0 chr1 16412272 16412456 -226251897 + AluSc SINE Alu 21 204 -105 1148 144 80 5 chr1 16412684 16412718 -226251635 + AluSg/x SINE Alu 83 113 -195 432 0 0 0 chr1 16412718 16412766 -226251587 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1148 144 80 5 chr1 16412766 16412943 -226251410 + AluSg/x SINE Alu 113 308 0 838 148 0 15 chr1 16412950 16413085 -226251268 + FLAM_C SINE Alu 1 133 0 855 187 0 7 chr1 16413185 16413340 -226251013 + LTR2B LTR ERV1 337 490 0 264 205 42 66 chr1 16413422 16413522 -226250831 - MIR SINE MIR -43 165 63 2220 129 7 0 chr1 16413795 16414098 -226250255 + AluSx SINE Alu 1 305 -7 627 227 74 51 chr1 16414572 16414751 -226249602 + MIR SINE MIR 42 228 -34 730 285 119 17 chr1 16414751 16415155 -226249198 + MLT1J1 LTR MaLR 1 445 -1 627 227 74 51 chr1 16415155 16415191 -226249162 + MIR SINE MIR 228 262 0 194 343 127 38 chr1 16415466 16415679 -226248674 - MIR SINE MIR 0 262 31 2347 95 0 0 chr1 16415682 16416004 -226248349 - AluSx SINE Alu 0 322 1 1939 152 0 30 chr1 16416027 16416330 -226248023 + AluJb SINE Alu 1 294 -18 629 252 187 8 chr1 16416417 16416627 -226247726 + L2 LINE L2 2605 2776 -496 2322 110 0 25 chr1 16416627 16416945 -226247408 - AluSx SINE Alu -2 310 1 629 252 187 8 chr1 16416945 16417141 -226247212 + L2 LINE L2 2776 3080 -192 1569 129 32 79 chr1 16417187 16417467 -226246886 - AluJo SINE Alu -16 296 30 206 306 83 0 chr1 16418156 16418228 -226246125 + MIR SINE MIR 111 188 -74 242 132 19 0 chr1 16418798 16418851 -226245502 + G-rich Low_complexity Low_complexity 5 58 0 2186 94 34 14 chr1 16419384 16419546 -226244807 - AluSg SINE Alu -7 303 131 2225 56 77 3 chr1 16419546 16419831 -226244522 - AluY SINE Alu -5 306 1 2186 94 34 14 chr1 16419831 16419965 -226244388 - AluSg SINE Alu -179 131 1 401 257 18 0 chr1 16420753 16420862 -226243491 - MIR SINE MIR -80 182 72 505 249 102 0 chr1 16421469 16421666 -226242687 + L1ME4a LINE L1 5717 5933 -188 2220 121 0 0 chr1 16421680 16421969 -226242384 - AluSq SINE Alu -14 299 11 1496 82 16 78 chr1 16422038 16422140 -226242213 - MER84 LTR ERVI -259 248 141 2304 104 3 0 chr1 16422140 16422437 -226241916 + AluSg1 SINE Alu 1 298 -11 1496 82 16 78 chr1 16422437 16422591 -226241762 - MER84 LTR ERVI -366 141 8 2030 131 0 7 chr1 16422618 16422916 -226241437 - AluSx SINE Alu -16 296 1 294 102 41 7 chr1 16422928 16422986 -226241367 - Alu SINE Alu -9 293 245 743 244 165 28 chr1 16423011 16423515 -226240838 - L1MEc LINE L1 -4258 2138 1566 584 197 0 0 chr1 16423613 16423730 -226240623 + FLAM_C SINE Alu 1 117 -16 195 42 0 0 chr1 16423738 16423762 -226240591 + (CA)n Simple_repeat Simple_repeat 1 24 0 2235 88 0 14 chr1 16424014 16424331 -226240022 + AluY SINE Alu 1 313 0 1692 137 0 0 chr1 16424358 16424591 -226239762 - AluSx SINE Alu -79 233 1 917 173 31 119 chr1 16425255 16425481 -226238872 + AluJb SINE Alu 1 206 -106 216 0 0 0 chr1 16425857 16425881 -226238472 + (A)n Simple_repeat Simple_repeat 1 24 0 253 91 0 0 chr1 16425909 16425942 -226238411 - U1 snRNA snRNA 0 165 133 1530 208 125 60 chr1 16425942 16426477 -226237876 - LTR4 LTR ERV1 0 596 27 753 196 14 0 chr1 16427066 16427236 -226237117 - AluJb SINE Alu 0 311 140 1975 110 86 10 chr1 16427368 16427658 -226236695 - AluSx SINE Alu 0 312 1 390 185 123 0 chr1 16428458 16428539 -226235814 - AluSg/x SINE Alu -1 301 211 * 2208 247 9 23 chr1 16428532 16429058 -226235295 - MER87 LTR ERV1 -22 519 1 2010 98 52 36 chr1 16429088 16429393 -226234960 - AluSg SINE Alu 0 310 1 2136 121 4 0 chr1 16429462 16429773 -226234580 + AluSg SINE Alu 1 312 0 24 32 0 0 chr1 16429801 16429832 -226234521 + AT_rich Low_complexity Low_complexity 1 31 0 2156 135 0 0 chr1 16430006 16430310 -226234043 + AluSx SINE Alu 3 306 -6 21 36 0 0 chr1 16430320 16430348 -226234005 + AT_rich Low_complexity Low_complexity 1 28 0 572 176 20 0 chr1 16430351 16430453 -226233900 - FRAM SINE Alu -33 143 40 560 179 0 0 chr1 16430458 16430564 -226233789 - FLAM_A SINE Alu -19 123 18 625 221 263 8 chr1 16430620 16430860 -226233493 - AluJo SINE Alu 0 302 2 26 50 0 0 chr1 16430860 16430900 -226233453 + AT_rich Low_complexity Low_complexity 1 40 0 324 48 0 0 chr1 16431944 16431986 -226232367 + (GA)n Simple_repeat Simple_repeat 1 42 0 1614 138 0 24 chr1 16432158 16432322 -226232031 - AluSx SINE Alu -13 299 141 249 33 0 0 chr1 16432322 16432352 -226232001 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1614 138 0 24 chr1 16432352 16432434 -226231919 - AluSx SINE Alu -171 141 59 469 220 80 13 chr1 16432920 16433070 -226231283 - REP3 LTR ERV -401 161 2 313 188 78 0 chr1 16433071 16433135 -226231218 + MER45B DNA AcHobo 312 380 -660 1462 0 0 0 chr1 16433587 16433751 -226230602 - U1 snRNA snRNA -1 164 1 276 326 51 14 chr1 16434136 16434274 -226230079 - Charlie4 DNA MER1_type -4 1957 1815 3043 129 37 4 chr1 16434851 16435333 -226229020 + MER41E LTR ERV1 15 512 0 2780 139 49 46 chr1 16435621 16436191 -226228162 - LTR8A LTR ERV1 0 727 156 1924 153 9 18 chr1 16436203 16436543 -226227810 - MER1B DNA MER1_type -2 337 1 556 186 83 51 chr1 16436543 16436693 -226227660 - LTR8 LTR ERV1 -535 156 2 619 191 94 63 chr1 16436708 16437025 -226227328 - MER31B LTR ERV1 -21 445 1 942 215 21 34 chr1 16437043 16437198 -226227155 - MER89 LTR ERV1 -2 557 403 2009 117 7 11 chr1 16437198 16437523 -226226830 + AluY SINE Alu 1 324 0 942 215 21 34 chr1 16437523 16437577 -226226776 - MER89 LTR ERV1 -156 403 350 941 128 21 0 chr1 16437577 16437733 -226226620 + LTR49 LTR ERV1 1 295 -444 2461 206 12 25 chr1 16437741 16437898 -226226455 + MER72 LTR ERV1 1 159 -563 3697 102 47 22 chr1 16437898 16438058 -226226295 + MER51D LTR ERV1 1 156 -501 2484 85 0 3 chr1 16438058 16438364 -226225989 + AluSx SINE Alu 1 305 -7 3697 102 47 22 chr1 16438364 16438842 -226225511 + MER51D LTR ERV1 156 655 -2 2461 206 12 25 chr1 16438842 16439195 -226225158 + MER72 LTR ERV1 159 504 -218 1150 133 19 0 chr1 16439427 16439585 -226224768 - AluSg/x SINE Alu -18 292 132 640 13 0 0 chr1 16440049 16440124 -226224229 - tRNA-Asn-AAC tRNA tRNA -2 75 1 301 298 83 30 chr1 16441217 16441385 -226222968 - L1ME LINE L1 -320 5801 5625 669 266 78 6 chr1 16441406 16441902 -226222451 - L1MEc LINE L1 -4258 2138 1561 28 61 0 0 chr1 16442011 16442060 -226222293 + AT_rich Low_complexity Low_complexity 1 49 0 366 269 19 9 chr1 16443130 16443238 -226221115 - L2 LINE L2 -797 2517 2409 3051 146 29 22 chr1 16443278 16443869 -226220484 + LTR49 LTR ERV1 1 595 0 4076 138 56 20 chr1 16443871 16444603 -226219750 + LTR49-int LTR ERV1 1 758 -5573 1481 121 0 0 chr1 16444607 16444805 -226219548 + AluSg/x SINE Alu 114 311 -1 199 380 54 5 chr1 16444864 16445048 -226219305 + L3 LINE CR1 66 258 -1319 225 0 0 0 chr1 16445297 16445322 -226219031 + (T)n Simple_repeat Simple_repeat 1 25 0 317 380 20 20 chr1 16445795 16445945 -226218408 - MER5B DNA MER1_type -22 156 7 2402 82 0 31 chr1 16446207 16446524 -226217829 - AluY SINE Alu -4 307 1 1928 110 50 30 chr1 16446669 16446970 -226217383 + AluSp SINE Alu 1 307 -6 212 382 104 7 chr1 16447160 16447304 -226217049 + MIR3 SINE MIR 44 201 -7 2867 320 48 41 chr1 16448616 16449530 -226214823 - PRIMA41-int LTR ERV1 -2057 5699 4793 2154 130 3 7 chr1 16449530 16449838 -226214515 - AluSx SINE Alu -5 307 1 2867 320 48 41 chr1 16449838 16450272 -226214081 - PRIMA41-int LTR ERV1 -2963 4793 4336 198 0 0 0 chr1 16450272 16450294 -226214059 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 2867 320 48 41 chr1 16450294 16450561 -226213792 - PRIMA41-int LTR ERV1 -3420 4336 4072 1853 63 0 5 chr1 16450590 16450812 -226213541 - AluY SINE Alu -90 221 1 523 244 163 65 chr1 16450878 16451005 -226213348 + L1MEc LINE L1 1704 1817 -4579 1950 150 3 0 chr1 16451005 16451291 -226213062 + AluSx SINE Alu 1 287 -25 523 244 163 65 chr1 16451291 16451317 -226213036 + L1MEc LINE L1 1817 1839 -4557 315 0 0 0 chr1 16451317 16451352 -226213001 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 523 244 163 65 chr1 16451352 16451504 -226212849 + L1MEc LINE L1 1839 2040 -4356 392 231 107 58 chr1 16451722 16451843 -226212510 - AluJ/FLAM SINE Alu -215 87 1 530 81 0 0 chr1 16451863 16451937 -226212416 - tRNA-Asn-AAC tRNA tRNA -3 74 1 2156 129 0 13 chr1 16452624 16452934 -226211419 + AluSx SINE Alu 1 306 -6 376 176 0 0 chr1 16452984 16453052 -226211301 + tRNA-His-CAC tRNA tRNA 6 73 -2 620 183 73 0 chr1 16453549 16453686 -226210667 - U1 snRNA snRNA -14 151 5 576 28 0 0 chr1 16454744 16454816 -226209537 - tRNA-Glu-GAG tRNA tRNA -3 72 1 354 329 19 12 chr1 16455309 16455470 -226208883 + L2 LINE L2 2351 2512 -802 335 189 57 126 chr1 16455554 16455729 -226208624 - MER20 DNA MER1_type -56 163 1 1135 179 24 32 chr1 16456613 16456859 -226207494 - MLT1A1 LTR MaLR 0 365 122 2596 91 8 0 chr1 16457036 16457388 -226206965 - THE1A LTR MaLR 0 355 1 749 274 128 38 chr1 16457471 16457978 -226206375 + L1M4 LINE L1 4695 5247 -899 447 246 98 50 chr1 16459503 16459663 -226204690 + L1ME2 LINE L1 5000 5151 -1023 4879 173 23 14 chr1 16459663 16460574 -226203779 + MER49 LTR ERV1 5 923 0 447 246 98 50 chr1 16460574 16460641 -226203712 + L1ME2 LINE L1 5151 5213 -961 8778 46 23 101 chr1 16460641 16462591 -226201762 + L1PA8 LINE L1 4293 6172 0 447 246 98 50 chr1 16462591 16462810 -226201543 + L1ME2 LINE L1 5213 5471 -703 529 185 0 0 chr1 16462810 16462902 -226201451 - AluJb SINE Alu -11 301 210 * 733 110 0 0 chr1 16462898 16462998 -226201355 - AluSc SINE Alu -130 179 80 324 299 163 0 chr1 16463001 16463148 -226201205 + L1ME2 LINE L1 5461 5631 -531 731 231 91 49 chr1 16463234 16463542 -226200811 + L1ME2 LINE L1 5831 6151 -13 646 135 0 0 chr1 16463556 16463652 -226200701 + AluSg/x SINE Alu 192 287 -22 336 203 14 14 chr1 16464105 16464174 -226200179 - tRNA-His-CAC tRNA tRNA -3 72 4 2329 103 7 0 chr1 16464425 16464727 -226199626 - AluSx SINE Alu -8 304 1 650 0 0 0 chr1 16465403 16465474 -226198879 - tRNA-Gly-GGG tRNA tRNA -3 71 1 398 240 0 0 chr1 16467121 16467196 -226197157 - tRNA-Val-GTG tRNA tRNA -1 75 1 2167 89 0 18 chr1 16468520 16468802 -226195551 + AluSg SINE Alu 1 277 -33 180 0 0 0 chr1 16468804 16468824 -226195529 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 465 197 110 16 chr1 16469145 16469272 -226195081 + MLT1H1 LTR MaLR 404 555 0 591 232 126 50 chr1 16469340 16469388 -226194965 - MIR SINE MIR -17 245 202 2338 109 0 0 chr1 16469388 16469692 -226194661 - AluSx SINE Alu -8 304 1 591 232 126 50 chr1 16469692 16469841 -226194512 - MIR SINE MIR -60 202 33 494 31 16 0 chr1 16469848 16469912 -226194441 + (CTATA)n Simple_repeat Simple_repeat 5 69 0 331 296 45 40 chr1 16470819 16470995 -226193358 - MIR SINE MIR -36 226 50 451 276 188 10 chr1 16471278 16471470 -226192883 - MIR SINE MIR -34 228 3 400 194 0 0 chr1 16472917 16472989 -226191364 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 206 350 12 0 chr1 16473894 16473974 -226190379 + GA-rich Low_complexity Low_complexity 3 83 0 198 191 0 0 chr1 16475563 16475605 -226188748 + (TA)n Simple_repeat Simple_repeat 2 43 0 337 341 52 17 chr1 16475768 16476056 -226188297 + L1MC/D LINE L1 5490 5789 -386 205 287 116 8 chr1 16476129 16476258 -226188095 - MIR SINE MIR -16 246 104 1037 70 7 0 chr1 16477183 16477326 -226187027 + (TATATG)n Simple_repeat Simple_repeat 5 148 0 33 66 0 0 chr1 16477344 16477405 -226186948 + AT_rich Low_complexity Low_complexity 1 61 0 1307 194 24 27 chr1 16477477 16477771 -226186582 + AluJo SINE Alu 14 306 -6 1168 275 81 29 chr1 16477845 16478259 -226186094 - L1 LINE L1 -1443 4703 4259 308 94 19 0 chr1 16478259 16478312 -226186041 + (TG)n Simple_repeat Simple_repeat 2 55 0 1168 275 81 29 chr1 16478312 16478381 -226185972 - L1 LINE L1 -1887 4259 4195 432 295 54 27 chr1 16478378 16478787 -226185566 - L1MCa LINE L1 -4701 1683 1265 * 232 266 215 32 chr1 16478832 16479148 -226185205 - L1MCa LINE L1 -5207 1356 983 1553 147 8 26 chr1 16479148 16479414 -226184939 - AluSq SINE Alu -3 310 50 1073 267 26 8 chr1 16479717 16480106 -226184247 + L1M4 LINE L1 4859 5254 -892 497 313 21 10 chr1 16480109 16480301 -226184052 + MLT2D LTR ERVL 1 194 -220 254 203 68 0 chr1 16480326 16480400 -226183953 + MLT2B2 LTR ERVL 367 445 -70 192 40 0 0 chr1 16481631 16481656 -226182697 + (CA)n Simple_repeat Simple_repeat 1 25 0 528 314 45 48 chr1 16482023 16482465 -226181888 + L1MC4 LINE L1 7189 7629 -413 270 73 0 0 chr1 16483818 16483859 -226180494 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 281 157 36 12 chr1 16484265 16484348 -226180005 + CT-rich Low_complexity Low_complexity 2 86 0 221 167 19 0 chr1 16485420 16485474 -226178879 + GA-rich Low_complexity Low_complexity 1 55 0 369 0 0 0 chr1 16486976 16487017 -226177336 + (CA)n Simple_repeat Simple_repeat 2 42 0 16180 84 5 46 chr1 16489233 16490298 -226174055 + L1P LINE L1 875 1982 -4164 5466 45 9 0 chr1 16490298 16490950 -226173403 - L1PA4 LINE L1 -4 6151 5494 16180 84 5 46 chr1 16490950 16492337 -226172016 + L1P LINE L1 1982 3226 -2920 1797 160 0 0 chr1 16493051 16493326 -226171027 + AluSx SINE Alu 38 312 0 345 200 42 42 chr1 16496422 16496517 -226167836 + L1MB5 LINE L1 6071 6165 -9 399 279 7 14 chr1 16497518 16497665 -226166688 - MIR SINE MIR -21 241 96 1775 165 10 0 chr1 16497838 16498141 -226166212 - AluSg SINE Alu -4 306 1 223 277 15 15 chr1 16500515 16500580 -226163773 - MIR SINE MIR -62 146 82 225 309 96 7 chr1 16502165 16502301 -226162052 - MER5A DNA MER1_type -28 161 14 316 246 95 0 chr1 16502328 16502427 -226161926 - MIR SINE MIR -67 141 47 1978 162 10 0 chr1 16502572 16502881 -226161472 - AluJo SINE Alu 0 312 1 3667 210 35 12 chr1 16502985 16504012 -226160341 - L1MB7 LINE L1 -26 6158 5108 248 298 97 0 chr1 16504700 16504824 -226159529 - MIR SINE MIR -73 189 54 630 253 19 43 chr1 16505139 16505343 -226159010 - L1ME3 LINE L1 -1 6230 6032 2573 165 5 2 chr1 16505343 16505774 -226158579 - MSTB1 LTR MaLR 0 432 1 630 253 19 43 chr1 16505774 16505826 -226158527 - L1ME3 LINE L1 -199 6032 5980 1231 118 0 6 chr1 16505829 16505999 -226158354 + AluSq SINE Alu 1 169 -144 556 230 19 6 chr1 16506032 16506193 -226158160 - L1ME3 LINE L1 -707 5526 5364 210 71 0 0 chr1 16506197 16506225 -226158128 + (TA)n Simple_repeat Simple_repeat 1 28 0 312 83 0 0 chr1 16506351 16506399 -226157954 + (CA)n Simple_repeat Simple_repeat 2 49 0 1389 281 25 41 chr1 16506419 16507028 -226157325 - L1ME3 LINE L1 -1715 4500 3902 266 227 41 52 chr1 16507210 16507307 -226157046 - L1ME3 LINE L1 -3407 2808 2713 369 329 62 5 chr1 16507836 16508046 -226156307 - L1ME3 LINE L1 -6023 373 152 1916 230 61 62 chr1 16508159 16508784 -226155569 + MLT1E3 LTR MaLR 1 624 0 332 291 0 0 chr1 16509468 16509547 -226154806 - LTR16B LTR ERVL -385 79 1 626 280 45 20 chr1 16509567 16509767 -226154586 - ERVL LTR ERVL -3761 2003 1799 386 368 9 9 chr1 16509953 16510176 -226154177 - ERVL LTR ERVL -3546 1450 1228 478 249 94 48 chr1 16510214 16510499 -226153854 - LTR33 LTR ERVL -248 275 9 212 229 66 16 chr1 16511076 16511137 -226153216 + MIR3 SINE MIR 138 201 -7 1515 205 58 11 chr1 16512106 16512467 -226151886 + L1ME2 LINE L1 5524 5901 -263 269 284 13 84 chr1 16512576 16512731 -226151622 + MLT1-int LTR MaLR 1010 1153 -218 3177 184 36 3 chr1 16512732 16512845 -226151508 + L1MC2 LINE L1 5460 5568 -776 3177 196 25 8 chr1 16512845 16513508 -226150845 + L1MC2 LINE L1 5661 6341 -3 3177 184 36 3 chr1 16513508 16513520 -226150833 + L1MC2 LINE L1 5568 6341 -3 491 199 5 25 chr1 16513938 16514138 -226150215 + GA-rich Low_complexity Low_complexity 1 195 0 218 250 0 0 chr1 16515210 16515258 -226149095 - L2 LINE L2 -1 3312 3265 470 277 43 0 chr1 16515614 16515755 -226148598 - L2 LINE L2 -797 2517 2371 955 152 28 28 chr1 16515806 16515984 -226148369 + AluJo SINE Alu 83 260 -52 435 186 71 44 chr1 16516219 16516332 -226148021 - MLT1I LTR MaLR -17 392 277 198 0 0 0 chr1 16516402 16516424 -226147929 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 302 343 19 0 chr1 16516425 16516530 -226147823 - L2 LINE L2 -12 3301 3195 26 30 0 0 chr1 16516621 16516654 -226147699 + AT_rich Low_complexity Low_complexity 1 33 0 1799 174 10 0 chr1 16516661 16516955 -226147398 + AluJb SINE Alu 1 297 -15 25 31 0 0 chr1 16517366 16517398 -226146955 + AT_rich Low_complexity Low_complexity 1 32 0 323 185 0 0 chr1 16517398 16517452 -226146901 - FLAM SINE Alu -2 131 78 292 257 26 44 chr1 16517492 16517605 -226146748 + L1ME LINE L1 4842 4952 -1194 1875 159 7 10 chr1 16517609 16517918 -226146435 + AluJb SINE Alu 1 308 -4 701 236 150 24 chr1 16517931 16518053 -226146300 + L1ME LINE L1 5047 5152 -1018 1832 153 16 13 chr1 16518053 16518361 -226145992 + AluJb SINE Alu 1 309 -3 701 236 150 24 chr1 16518361 16518788 -226145565 + L1ME LINE L1 5152 5655 -515 260 148 277 59 chr1 16518788 16518843 -226145510 + L1ME3A LINE L1 6037 6079 -91 2010 147 3 0 chr1 16518843 16519142 -226145211 - AluJb SINE Alu -10 302 3 260 148 277 59 chr1 16519142 16519187 -226145166 + L1ME3A LINE L1 6079 6159 -11 2421 69 0 23 chr1 16520463 16520768 -226143585 + AluY SINE Alu 1 298 -13 994 148 7 0 chr1 16520768 16520940 -226143413 + AluJb SINE Alu 134 306 0 211 240 50 60 chr1 16522192 16522292 -226142061 - L2 LINE L2 -15 3257 3159 621 187 57 0 chr1 16522705 16522828 -226141525 + MER3 DNA MER1_type 80 209 0 281 204 0 0 chr1 16522785 16522834 -226141519 - MER3 DNA MER1_type -119 90 42 * 261 0 0 0 chr1 16523511 16523540 -226140813 + (TAA)n Simple_repeat Simple_repeat 1 29 0 522 250 188 10 chr1 16523732 16523924 -226140429 + MIR SINE MIR 3 228 -34 361 258 108 38 chr1 16524207 16524393 -226139960 + MIR SINE MIR 50 248 -14 180 0 0 0 chr1 16525056 16525076 -226139277 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2138 103 0 14 chr1 16525078 16525359 -226138994 - AluSg SINE Alu -33 277 1 261 284 52 26 chr1 16526210 16526326 -226138027 - Charlie4 DNA MER1_type -4 1957 1839 2528 55 3 7 chr1 16526605 16526915 -226137438 - AluY SINE Alu -2 309 1 862 206 12 0 chr1 16527001 16527166 -226137187 - AluJb SINE Alu -6 306 140 290 227 13 13 chr1 16527184 16527259 -226137094 + MER4B-int LTR ERV1 5766 5840 -918 2719 206 32 34 chr1 16527294 16527910 -226136443 - L1P LINE L1 -5521 625 11 481 132 13 0 chr1 16527927 16528003 -226136350 - AluJb SINE Alu -179 133 57 2074 161 44 3 chr1 16528004 16528370 -226135983 + LOR1b LTR ERV1 79 459 -2 383 125 125 0 chr1 16529159 16529223 -226135130 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 271 0 29 chr1 16530136 16530206 -226134147 + GA-rich Low_complexity Low_complexity 2 69 0 253 192 110 0 chr1 16531610 16531683 -226132670 + HAL1 LINE L1 2281 2361 -146 249 369 53 5 chr1 16532059 16532265 -226132088 + L1MC/D LINE L1 5574 5789 -2019 257 256 124 16 chr1 16532338 16532467 -226131886 - MIR SINE MIR -16 246 104 234 222 0 0 chr1 16533386 16533449 -226130904 + L1MA9 LINE L1 6214 6276 -36 191 88 29 0 chr1 16533453 16533487 -226130866 + (TA)n Simple_repeat Simple_repeat 2 36 0 2327 79 0 26 chr1 16533515 16533818 -226130535 - AluY SINE Alu -16 295 1 1201 221 11 7 chr1 16533976 16534252 -226130101 + AluJo SINE Alu 27 303 -9 1115 254 98 39 chr1 16534328 16534739 -226129614 - L1 LINE L1 -1443 4703 4258 488 68 14 0 chr1 16534739 16534812 -226129541 + (TG)n Simple_repeat Simple_repeat 2 75 0 1115 254 98 39 chr1 16534812 16534886 -226129467 - L1 LINE L1 -1888 4258 4190 437 291 73 49 chr1 16534878 16535287 -226129066 - L1MCa LINE L1 -4701 1683 1265 * 237 266 215 32 chr1 16535332 16535648 -226128705 - L1MCa LINE L1 -5207 1356 983 1553 147 8 26 chr1 16535648 16535914 -226128439 - AluSq SINE Alu -3 310 50 1073 267 26 8 chr1 16536217 16536606 -226127747 + L1M4 LINE L1 4859 5254 -892 497 313 21 10 chr1 16536609 16536801 -226127552 + MLT2D LTR ERVL 1 194 -220 254 203 68 0 chr1 16536826 16536900 -226127453 + MLT2B2 LTR ERVL 367 445 -70 261 0 0 0 chr1 16538131 16538160 -226126193 + (CA)n Simple_repeat Simple_repeat 1 29 0 528 314 45 48 chr1 16538527 16538969 -226125384 + L1MC4 LINE L1 7189 7629 -413 226 352 11 34 chr1 16538980 16539156 -226125197 - L1MC4 LINE L1 -411 7631 7460 261 0 0 0 chr1 16540327 16540356 -226123997 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 248 157 24 36 chr1 16540762 16540845 -226123508 + CT-rich Low_complexity Low_complexity 2 83 0 372 22 0 0 chr1 16541937 16541982 -226122371 + (CA)n Simple_repeat Simple_repeat 2 46 0 270 73 0 0 chr1 16543897 16543938 -226120415 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 281 157 36 12 chr1 16544344 16544427 -226119926 + CT-rich Low_complexity Low_complexity 2 86 0 351 0 0 0 chr1 16545519 16545558 -226118795 + (CA)n Simple_repeat Simple_repeat 2 40 0 221 167 19 0 chr1 16547059 16547113 -226117240 + GA-rich Low_complexity Low_complexity 1 55 0 270 73 0 0 chr1 16548608 16548649 -226115704 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 281 157 36 12 chr1 16549055 16549138 -226115215 + CT-rich Low_complexity Low_complexity 2 86 0 387 0 0 0 chr1 16550230 16550273 -226114080 + (CA)n Simple_repeat Simple_repeat 2 44 0 221 167 19 0 chr1 16551776 16551830 -226112523 + GA-rich Low_complexity Low_complexity 1 55 0 423 0 0 0 chr1 16553333 16553380 -226110973 + (CA)n Simple_repeat Simple_repeat 2 48 0 16322 80 5 48 chr1 16555597 16556668 -226107685 + L1P LINE L1 875 1991 -4155 5408 47 2 0 chr1 16556668 16557313 -226107040 - L1PA4 LINE L1 -16 6139 5494 16322 80 5 48 chr1 16557313 16558700 -226105653 + L1P LINE L1 1991 3226 -2920 1724 156 0 0 chr1 16559414 16559689 -226104664 + AluSx SINE Alu 38 312 0 404 242 0 0 chr1 16562786 16562881 -226101472 + L1MB5 LINE L1 6071 6165 -9 444 276 21 14 chr1 16563824 16563969 -226100384 - MIR SINE MIR -21 241 96 211 143 0 24 chr1 16564119 16564161 -226100192 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 1698 147 0 0 chr1 16564166 16564439 -226099914 - AluSg SINE Alu -37 273 1 1862 138 6 6 chr1 16565520 16565832 -226098521 - AluSx SINE Alu 0 312 1 2165 86 0 20 chr1 16565838 16566141 -226098212 - AluY SINE Alu -14 297 1 1037 181 5 5 chr1 16566227 16566420 -226097933 - AluJb SINE Alu -108 204 12 385 253 0 0 chr1 16569063 16569158 -226095195 + L1MB5 LINE L1 6071 6165 -9 502 265 7 14 chr1 16570105 16570252 -226094101 - MIR SINE MIR -21 241 96 326 73 0 18 chr1 16570405 16570460 -226093893 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1702 150 0 0 chr1 16570462 16570735 -226093618 - AluSg SINE Alu -37 273 1 1808 145 6 6 chr1 16571817 16572128 -226092225 - AluSx SINE Alu -1 311 1 2285 69 0 20 chr1 16572134 16572440 -226091913 - AluY SINE Alu -11 300 1 1037 181 5 5 chr1 16572526 16572719 -226091634 - AluJb SINE Alu -108 204 12 392 253 0 0 chr1 16575368 16575463 -226088890 + L1MB5 LINE L1 6071 6165 -9 488 272 7 14 chr1 16576470 16576617 -226087736 - MIR SINE MIR -21 241 96 1686 163 10 0 chr1 16576786 16577093 -226087260 - AluSg SINE Alu 0 310 1 248 277 15 15 chr1 16579466 16579531 -226084822 - MIR SINE MIR -62 146 82 208 372 83 0 chr1 16579638 16579759 -226084594 - MIR SINE MIR -14 248 118 266 307 96 36 chr1 16581081 16581247 -226083106 - MER5A DNA MER1_type 0 189 14 313 279 57 0 chr1 16581256 16581372 -226082981 - MIR SINE MIR -35 173 47 1794 165 10 0 chr1 16581510 16581807 -226082546 - AluJo SINE Alu -12 300 1 3629 226 39 11 chr1 16581912 16582992 -226081361 - L1MB7 LINE L1 -26 6158 5041 312 309 81 13 chr1 16583627 16583776 -226080577 - MIR SINE MIR -73 189 31 642 261 16 39 chr1 16584066 16584270 -226080083 - L1ME3 LINE L1 -1 6230 6032 2587 165 5 2 chr1 16584270 16584701 -226079652 - MSTB1 LTR MaLR 0 432 1 642 261 16 39 chr1 16584701 16584753 -226079600 - L1ME3 LINE L1 -199 6032 5980 1160 118 0 6 chr1 16584756 16584926 -226079427 + AluSq SINE Alu 1 169 -144 553 212 20 7 chr1 16584969 16585120 -226079233 - L1ME3 LINE L1 -715 5516 5364 192 77 0 0 chr1 16585124 16585150 -226079203 + (TA)n Simple_repeat Simple_repeat 1 26 0 420 67 0 0 chr1 16585276 16585336 -226079017 + (CA)n Simple_repeat Simple_repeat 2 61 0 1230 286 31 41 chr1 16585356 16585961 -226078392 - L1ME3 LINE L1 -1715 4500 3902 21 71 0 0 chr1 16585992 16586034 -226078319 + AT_rich Low_complexity Low_complexity 1 42 0 262 227 41 52 chr1 16586143 16586240 -226078113 - L1ME3 LINE L1 -3407 2808 2713 387 329 62 5 chr1 16586769 16586979 -226077374 - L1ME3 LINE L1 -6023 373 152 1920 230 61 62 chr1 16587092 16587717 -226076636 + MLT1E3 LTR MaLR 1 624 0 317 304 0 0 chr1 16588401 16588480 -226075873 - LTR16B LTR ERVL -385 79 1 639 280 45 20 chr1 16588500 16588700 -226075653 - ERVL LTR ERVL -3761 2003 1799 389 372 9 9 chr1 16588886 16589109 -226075244 - ERVL LTR ERVL -3546 1450 1228 499 253 94 48 chr1 16589147 16589432 -226074921 - LTR33 LTR ERVL -248 275 9 239 229 66 16 chr1 16590011 16590072 -226074281 + MIR3 SINE MIR 138 201 -7 1499 205 58 11 chr1 16591041 16591402 -226072951 + L1ME2 LINE L1 5524 5901 -263 284 280 13 83 chr1 16591511 16591668 -226072685 + MLT1-int LTR MaLR 1010 1155 -216 * 3130 193 27 6 chr1 16591666 16592443 -226071910 + L1MC2 LINE L1 5459 6341 -3 505 185 12 31 chr1 16592914 16593076 -226071277 + GA-rich Low_complexity Low_complexity 2 160 0 191 390 57 0 chr1 16593559 16593664 -226070689 + L2 LINE L2 3198 3308 -5 236 250 0 0 chr1 16594146 16594194 -226070159 - L2 LINE L2 -1 3312 3265 529 277 43 0 chr1 16594550 16594691 -226069662 - L2 LINE L2 -797 2517 2371 888 152 28 28 chr1 16594742 16594920 -226069433 + AluJo SINE Alu 83 260 -52 461 177 71 44 chr1 16595155 16595268 -226069085 - MLT1I LTR MaLR -17 392 277 404 339 17 0 chr1 16595345 16595460 -226068893 - L2 LINE L2 0 3272 3156 26 30 0 0 chr1 16595553 16595586 -226068767 + AT_rich Low_complexity Low_complexity 1 33 0 1737 166 10 0 chr1 16595593 16595888 -226068465 + AluJb SINE Alu 1 298 -14 25 31 0 0 chr1 16596299 16596331 -226068022 + AT_rich Low_complexity Low_complexity 1 32 0 322 185 0 0 chr1 16596331 16596385 -226067968 - FLAM SINE Alu -2 131 78 289 257 26 44 chr1 16596425 16596538 -226067815 + L1ME LINE L1 4842 4952 -1194 1747 156 6 16 chr1 16596542 16596856 -226067497 + AluJb SINE Alu 1 311 -1 702 239 150 23 chr1 16596869 16596991 -226067362 + L1ME LINE L1 5047 5152 -1018 1802 154 7 7 chr1 16596991 16597297 -226067056 + AluJb SINE Alu 1 306 -6 702 239 150 23 chr1 16597297 16597729 -226066624 + L1ME LINE L1 5152 5655 -515 256 148 277 59 chr1 16597729 16597784 -226066569 + L1ME3A LINE L1 6037 6079 -91 1853 152 3 0 chr1 16597784 16598081 -226066272 - AluJb SINE Alu -12 300 3 256 148 277 59 chr1 16598081 16598126 -226066227 + L1ME3A LINE L1 6079 6159 -11 933 282 90 55 chr1 16600060 16600681 -226063672 + L2 LINE L2 2403 3059 -213 1859 143 0 11 chr1 16601114 16601401 -226062952 + AluJb SINE Alu 1 284 -28 207 0 0 0 chr1 16601401 16601424 -226062929 + (GA)n Simple_repeat Simple_repeat 2 24 0 988 191 104 0 chr1 16601530 16601771 -226062582 + L1ME2 LINE L1 5889 6154 -10 482 388 41 8 chr1 16601805 16602050 -226062303 - MIR SINE MIR -5 257 5 222 37 0 0 chr1 16602081 16602108 -226062245 + (TA)n Simple_repeat Simple_repeat 1 27 0 2322 87 3 0 chr1 16602211 16602510 -226061843 + AluSx SINE Alu 1 300 -12 425 193 68 0 chr1 16602510 16602598 -226061755 - AluJo/FLAM SINE Alu -198 114 21 215 237 0 17 chr1 16602710 16602769 -226061584 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 232 311 37 7 chr1 16604306 16604441 -226059912 + L1ME LINE L1 5680 5818 -303 423 259 38 8 chr1 16605100 16605231 -226059122 - MIR SINE MIR -68 194 60 293 266 224 6 chr1 16605423 16605593 -226058760 - MIR3 SINE MIR -12 250 45 2131 116 0 0 chr1 16606617 16606918 -226057435 - AluY SINE Alu -10 301 1 293 377 14 0 chr1 16606968 16607106 -226057247 - MER91B DNA MER1_type -50 140 1 530 301 125 14 chr1 16607171 16607387 -226056966 - MIR SINE MIR -6 256 17 246 236 0 0 chr1 16608042 16608097 -226056256 + MIR SINE MIR 90 144 -118 2057 125 0 0 chr1 16608207 16608496 -226055857 + AluSq SINE Alu 1 289 -24 2285 67 3 0 chr1 16608503 16608819 -226055534 + AluSp SINE Alu 1 317 0 506 273 47 17 chr1 16608823 16608995 -226055358 - MIR SINE MIR -8 254 78 449 293 52 24 chr1 16609378 16609590 -226054763 - MIR SINE MIR -35 227 10 283 241 38 13 chr1 16610353 16610432 -226053921 + MIR SINE MIR 41 121 -87 2089 100 40 0 chr1 16610463 16610763 -226053590 + AluSx SINE Alu 1 312 0 1978 113 28 0 chr1 16611075 16611366 -226052987 - AluSx SINE Alu -13 299 1 415 205 82 16 chr1 16611368 16611490 -226052863 - MIR SINE MIR -117 145 16 249 261 0 0 chr1 16611999 16612064 -226052289 + (CAGAGA)n Simple_repeat Simple_repeat 5 69 0 321 233 94 0 chr1 16613235 16613297 -226051056 + MIR SINE MIR 104 159 -103 2212 98 0 0 chr1 16613297 16613593 -226050760 - AluSx SINE Alu -16 296 1 321 233 94 0 chr1 16613593 16613643 -226050710 + MIR SINE MIR 159 231 -31 841 259 81 0 chr1 16613730 16613966 -226050387 + MIR SINE MIR 8 262 0 211 229 0 0 chr1 16613987 16614035 -226050318 + (TTA)n Simple_repeat Simple_repeat 3 50 0 286 294 64 18 chr1 16614036 16614145 -226050208 + MIR SINE MIR 58 171 -91 1570 76 0 36 chr1 16614981 16615151 -226049202 - AluY SINE Alu -9 302 127 2284 84 0 0 chr1 16615151 16615448 -226048905 - AluY SINE Alu -13 298 2 1846 121 10 49 chr1 16615450 16615755 -226048598 - AluSq SINE Alu -18 295 3 1570 76 0 36 chr1 16615755 16615804 -226048549 - AluY SINE Alu -185 126 88 289 267 23 0 chr1 16617566 16617652 -226046701 - MIR SINE MIR -75 133 46 376 270 65 12 chr1 16617736 16617935 -226046418 + MIR SINE MIR 18 230 -32 313 299 0 0 chr1 16618278 16618355 -226045998 + MIR SINE MIR 73 149 -113 1978 139 7 0 chr1 16618427 16618730 -226045623 - AluSx SINE Alu -7 305 1 2057 106 0 3 chr1 16619209 16619522 -226044831 + AluSx SINE Alu 1 312 0 738 151 22 65 chr1 16619532 16619671 -226044682 + FLAM_A SINE Alu 1 133 0 1088 306 44 21 chr1 16619679 16620156 -226044197 + L1MC4a LINE L1 5429 5916 -1892 381 43 0 0 chr1 16620174 16620221 -226044132 + (TG)n Simple_repeat Simple_repeat 1 47 0 2210 107 0 19 chr1 16620273 16620591 -226043762 + AluSx SINE Alu 1 312 0 204 235 0 0 chr1 16620624 16620675 -226043678 + A-rich Low_complexity Low_complexity 1 51 0 2184 117 0 0 chr1 16620824 16621131 -226043222 - AluSx SINE Alu -5 307 1 31 58 0 0 chr1 16621131 16621183 -226043170 + AT_rich Low_complexity Low_complexity 1 52 0 1063 186 10 0 chr1 16621211 16621404 -226042949 + AluJo SINE Alu 97 291 -21 1055 223 116 79 chr1 16621439 16621858 -226042495 + L1MC5 LINE L1 7054 7456 -505 1850 114 33 4 chr1 16621858 16622171 -226042182 + AluSx SINE Alu 1 321 0 1055 223 116 79 chr1 16622171 16622260 -226042093 + L1MC5 LINE L1 7456 7540 -421 2092 125 0 3 chr1 16622260 16622565 -226041788 - AluSx SINE Alu -8 304 1 1055 223 116 79 chr1 16622565 16622638 -226041715 + L1MC5 LINE L1 7540 7659 -302 1105 212 9 0 chr1 16622640 16622871 -226041482 + AluJb SINE Alu 3 235 -77 2045 128 3 7 chr1 16623064 16623369 -226040984 + AluSq SINE Alu 1 304 -9 2320 89 0 0 chr1 16623375 16623678 -226040675 + AluSg SINE Alu 1 303 -7 221 275 101 0 chr1 16623683 16623752 -226040601 + MIR SINE MIR 108 183 -79 1388 185 82 4 chr1 16624629 16624899 -226039454 + AluJo SINE Alu 1 291 -21 189 0 0 0 chr1 16625162 16625183 -226039170 + (CAG)n Simple_repeat Simple_repeat 1 21 0 794 193 12 6 chr1 16625671 16625837 -226038516 + L1MA10 LINE L1 6168 6334 0 6364 98 26 53 chr1 16625903 16626372 -226037981 + L1MA2 LINE L1 5133 5613 -691 2218 110 0 0 chr1 16626372 16626680 -226037673 + AluSq SINE Alu 4 311 -2 2242 86 0 22 chr1 16626680 16626993 -226037360 + AluY SINE Alu 1 306 -5 6364 98 26 53 chr1 16626993 16627724 -226036629 + L1MA2 LINE L1 5611 6304 0 1852 145 7 20 chr1 16627805 16628108 -226036245 - AluJo SINE Alu -13 299 1 252 274 83 0 chr1 16629130 16629214 -226035139 + L2 LINE L2 3173 3263 -9 1039 208 51 0 chr1 16629658 16629855 -226034498 - MER3 DNA MER1_type 0 209 3 1054 216 82 0 chr1 16636088 16636357 -226027996 - Charlie1a DNA MER1_type -1116 339 49 27 0 0 0 chr1 16636623 16636650 -226027703 + AT_rich Low_complexity Low_complexity 1 27 0 292 273 144 7 chr1 16636952 16637091 -226027262 + MIR SINE MIR 96 253 -9 211 293 0 0 chr1 16637091 16637149 -226027204 + (TAG)n Simple_repeat Simple_repeat 1 58 0 327 379 68 4 chr1 16637468 16637703 -226026650 + MIR SINE MIR 1 250 -12 195 256 37 12 chr1 16638485 16638567 -226025786 - MIR3 SINE MIR -12 196 113 992 169 45 0 chr1 16639170 16639348 -226025005 - MER5A DNA MER1_type -1 188 3 515 88 0 0 chr1 16639725 16639793 -226024560 - Alu SINE Alu -15 295 228 1766 112 26 8 chr1 16639793 16640060 -226024293 - AluSx SINE Alu -40 272 1 242 252 98 49 chr1 16643405 16643528 -226020825 + L2 LINE L2 3144 3272 0 2124 103 0 0 chr1 16643745 16644026 -226020327 + AluSx SINE Alu 1 281 -31 261 57 0 0 chr1 16644026 16644061 -226020292 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 348 166 57 176 chr1 16644354 16644511 -226019842 + AluJb SINE Alu 88 206 -96 238 91 0 0 chr1 16644899 16644932 -226019421 - U1 snRNA snRNA 0 165 133 1540 220 121 58 chr1 16644932 16645468 -226018885 - LTR4 LTR ERV1 0 596 27 811 200 12 24 chr1 16646032 16646228 -226018125 - AluJb SINE Alu 0 312 140 1818 125 87 0 chr1 16646370 16646657 -226017696 - AluSx SINE Alu 0 312 1 458 187 110 0 chr1 16647455 16647546 -226016807 - AluSg/x SINE Alu -1 309 209 2239 241 10 23 chr1 16647547 16648065 -226016288 - MER87 LTR ERV1 -30 511 1 1944 108 54 14 chr1 16648105 16648401 -226015952 - AluSg SINE Alu -2 308 1 1930 136 4 0 chr1 16648470 16648781 -226015572 + AluSg SINE Alu 1 312 0 24 32 0 0 chr1 16648805 16648836 -226015517 + AT_rich Low_complexity Low_complexity 1 31 0 2037 135 0 0 chr1 16649005 16649309 -226015044 + AluSx SINE Alu 3 306 -6 21 36 0 0 chr1 16649319 16649347 -226015006 + AT_rich Low_complexity Low_complexity 1 28 0 634 167 20 0 chr1 16649350 16649452 -226014901 - AluJo/FRAM SINE Alu -33 279 176 591 198 0 0 chr1 16649452 16649563 -226014790 - FLAM_A SINE Alu -14 128 18 721 218 268 8 chr1 16649619 16649858 -226014495 - AluJo SINE Alu 0 302 2 21 36 0 0 chr1 16649858 16649886 -226014467 + AT_rich Low_complexity Low_complexity 1 28 0 393 22 0 0 chr1 16650942 16650988 -226013365 + (GA)n Simple_repeat Simple_repeat 1 46 0 1594 122 0 24 chr1 16651161 16651324 -226013029 - AluSx SINE Alu -14 298 141 249 33 0 0 chr1 16651324 16651354 -226012999 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1594 122 0 24 chr1 16651354 16651436 -226012917 - AluSx SINE Alu -171 141 59 488 227 80 13 chr1 16651922 16652072 -226012281 - REP3 LTR ERV -401 161 2 1541 0 0 0 chr1 16652578 16652742 -226011611 - U1 snRNA snRNA -1 164 1 307 319 51 14 chr1 16653126 16653264 -226011089 - Charlie4 DNA MER1_type -4 1957 1815 3055 131 37 4 chr1 16653843 16654325 -226010028 + MER41E LTR ERV1 15 512 0 331 350 83 0 chr1 16654440 16654597 -226009756 + HAL1 LINE L1 527 696 -1811 2554 142 49 46 chr1 16654613 16655183 -226009170 - LTR8A LTR ERV1 0 727 156 849 170 16 27 chr1 16655195 16655383 -226008970 - MER1B DNA MER1_type -2 337 152 1726 316 66 25 chr1 16656262 16657175 -226007178 - PRIMA41-int LTR ERV1 -2057 5699 4750 2583 99 8 0 chr1 16657300 16657652 -226006701 - THE1A LTR MaLR 0 355 1 533 306 120 34 chr1 16657737 16658244 -226006109 + L1M4 LINE L1 4697 5247 -899 1894 57 54 50 chr1 16659436 16659758 -226004595 + AluY SINE Alu 1 323 0 459 299 141 25 chr1 16660086 16660225 -226004128 + L1M4 LINE L1 4987 5108 -1038 2778 13 0 0 chr1 16660225 16660536 -226003817 + AluYb8 SINE Alu 1 311 -7 459 299 141 25 chr1 16660536 16660570 -226003783 + L1M4 LINE L1 5108 5137 -1009 4990 172 30 16 chr1 16660570 16661476 -226002877 + MER49 LTR ERV1 5 923 0 459 299 141 25 chr1 16661476 16661542 -226002811 + L1M4 LINE L1 5137 5255 -891 4974 40 0 0 chr1 16661543 16662214 -226002139 + L1P LINE L1 4293 4963 -1183 559 182 0 0 chr1 16662220 16662332 -226002021 + AluSg/x SINE Alu 193 304 0 310 232 0 0 chr1 16662769 16662838 -226001515 - tRNA-His-CAC tRNA tRNA -3 72 4 2025 117 10 23 chr1 16663091 16663399 -226000954 - AluSx SINE Alu -8 304 1 600 56 0 0 chr1 16664063 16664135 -226000218 - tRNA-Gly-GGG tRNA tRNA -2 72 1 234 81 0 0 chr1 16665757 16665794 -225998559 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 504 153 0 0 chr1 16665800 16665872 -225998481 - tRNA-Val-GTG tRNA tRNA -4 72 1 2002 104 4 14 chr1 16667197 16667477 -225996876 + AluSg SINE Alu 1 277 -33 180 0 0 0 chr1 16667479 16667499 -225996854 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 381 301 45 40 chr1 16668172 16668348 -225996005 - MIR SINE MIR -36 226 50 497 285 180 10 chr1 16668623 16668823 -225995530 - MIR SINE MIR -26 236 3 203 189 0 0 chr1 16668847 16668884 -225995469 + T-rich Low_complexity Low_complexity 1 37 0 212 0 0 35 chr1 16670255 16670284 -225994069 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr1 16670497 16670519 -225993834 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 16671141 16671161 -225993192 + (T)n Simple_repeat Simple_repeat 1 20 0 342 0 0 0 chr1 16672205 16672243 -225992110 + (TTA)n Simple_repeat Simple_repeat 1 38 0 554 195 57 0 chr1 16672926 16673049 -225991304 - MER3 DNA MER1_type 0 209 80 243 269 46 56 chr1 16673462 16673570 -225990783 + L2 LINE L2 3159 3265 -7 1425 143 6 146 chr1 16674814 16675007 -225989346 - AluJb SINE Alu 0 327 109 2367 80 0 0 chr1 16675007 16675306 -225989047 - AluSx SINE Alu -13 299 1 1425 143 6 146 chr1 16675306 16675317 -225989036 - AluJb SINE Alu -218 109 98 2147 118 0 7 chr1 16675317 16675614 -225988739 - AluSx SINE Alu -17 295 1 1425 143 6 146 chr1 16675614 16675648 -225988705 - AluJb SINE Alu -229 98 61 2306 97 0 0 chr1 16675648 16675948 -225988405 + AluSq SINE Alu 1 300 -13 2017 118 17 0 chr1 16675948 16676244 -225988109 + AluSq SINE Alu 1 301 -12 1425 143 6 146 chr1 16676244 16676375 -225987978 - AluJb SINE Alu -264 63 1 850 179 39 5 chr1 16676376 16676583 -225987770 + Charlie5 DNA MER1_type 2372 2585 -27 206 79 0 26 chr1 16678237 16678275 -225986078 + (CGGG)n Simple_repeat Simple_repeat 3 39 0 226 279 88 44 chr1 16680781 16680917 -225983436 + L2 LINE L2 2965 3106 -166 200 217 11 130 chr1 16681054 16681112 -225983241 + L2 LINE L2 3191 3236 -36 2308 100 0 3 chr1 16681112 16681422 -225982931 + AluSx SINE Alu 1 309 -3 200 217 11 130 chr1 16681422 16681455 -225982898 + L2 LINE L2 3236 3271 -1 211 309 108 36 chr1 16681471 16681610 -225982743 - MIR3 SINE MIR -47 161 13 * 438 181 21 32 chr1 16681608 16681702 -225982651 + MER5A DNA MER1_type 14 106 -83 1648 95 0 13 chr1 16681886 16682117 -225982236 + AluSg/x SINE Alu 83 310 0 201 250 0 83 chr1 16683866 16683986 -225980367 + G-rich Low_complexity Low_complexity 5 114 0 207 219 47 0 chr1 16684923 16684987 -225979366 - MIR SINE MIR -87 121 55 222 37 0 0 chr1 16685319 16685346 -225979007 + (CGG)n Simple_repeat Simple_repeat 2 28 0 214 232 49 0 chr1 16685563 16685645 -225978708 + (CGGG)n Simple_repeat Simple_repeat 4 89 0 250 234 39 0 chr1 16688599 16688676 -225975677 + G-rich Low_complexity Low_complexity 5 84 0 278 316 13 19 chr1 16689307 16689462 -225974891 + (TG)n Simple_repeat Simple_repeat 2 155 0 223 233 128 12 chr1 16689995 16690081 -225974272 + MIR SINE MIR 45 140 -68 350 302 63 16 chr1 16691056 16691182 -225973171 + MIR SINE MIR 31 162 -100 2120 103 34 0 chr1 16691230 16691521 -225972832 - AluSq SINE Alu -12 301 1 2165 69 0 35 chr1 16691530 16691843 -225972510 - AluSc SINE Alu 0 303 1 208 368 23 0 chr1 16691878 16691965 -225972388 + MIR SINE MIR 173 261 -1 208 347 199 0 chr1 16692081 16692277 -225972076 - L3 LINE CR1 -63 1514 1280 236 400 103 0 chr1 16692611 16692786 -225971567 + MIR SINE MIR 5 197 -65 219 273 70 0 chr1 16692934 16693032 -225971321 + MIR SINE MIR 63 145 -63 22 35 0 0 chr1 16693304 16693333 -225971020 + GC_rich Low_complexity Low_complexity 1 29 0 248 198 10 59 chr1 16693575 16693676 -225970677 + (CCCCG)n Simple_repeat Simple_repeat 5 100 0 2357 60 17 3 chr1 16694106 16694406 -225969947 - AluSg SINE Alu -6 304 1 199 332 122 53 chr1 16694497 16694744 -225969609 + L2 LINE L2 2914 3177 -95 477 225 58 68 chr1 16694750 16694941 -225969412 - MER53 DNA DNA 0 189 1 2122 134 0 0 chr1 16695009 16695316 -225969037 - AluSx SINE Alu -5 307 1 186 231 115 0 chr1 16695467 16695519 -225968834 - MIR SINE MIR -137 125 68 180 243 0 0 chr1 16696828 16696865 -225967488 + MIR SINE MIR 218 254 -8 1740 169 0 3 chr1 16697116 16697411 -225966942 + AluJo SINE Alu 18 311 -1 22 56 0 0 chr1 16697436 16697472 -225966881 + AT_rich Low_complexity Low_complexity 1 36 0 684 324 89 0 chr1 16697475 16697700 -225966653 - MIR SINE MIR -1 261 17 199 286 146 56 chr1 16697867 16698045 -225966308 + MIR SINE MIR 51 244 -18 181 336 138 37 chr1 16698853 16699121 -225965232 + L2 LINE L2 2874 3168 -145 1916 122 21 11 chr1 16699661 16699948 -225964405 + AluSx SINE Alu 1 290 -22 287 251 185 20 chr1 16699968 16700163 -225964190 - L2 LINE L2 -200 3113 2887 1145 139 0 0 chr1 16700240 16700405 -225963948 - AluSg/x SINE Alu -16 296 132 2116 120 0 3 chr1 16700406 16700698 -225963655 - AluSg SINE Alu -19 291 1 2351 81 0 3 chr1 16700711 16701020 -225963333 - AluSg SINE Alu -1 309 2 210 246 0 62 chr1 16701813 16701878 -225962475 - MIR SINE MIR -86 122 62 492 236 36 0 chr1 16701911 16702021 -225962332 + L2 LINE L2 3155 3268 -4 197 267 33 0 chr1 16702022 16702082 -225962271 + MIR SINE MIR 130 191 -71 2182 91 3 67 chr1 16702124 16702501 -225961852 - AluSx SINE Alu 0 356 1 1297 82 6 0 chr1 16703030 16703217 -225961136 - AluSp SINE Alu -30 283 125 2452 79 0 22 chr1 16706983 16707301 -225957052 - AluY SINE Alu 0 311 1 1416 160 30 4 chr1 16709318 16709581 -225954772 + L1M2 LINE L1 5389 5658 -633 896 86 17 0 chr1 16710142 16710259 -225954094 - AluSg/x SINE Alu -26 286 168 202 206 0 0 chr1 16710272 16710306 -225954047 + polypurine Low_complexity Low_complexity 1 34 0 380 233 0 0 chr1 16711357 16711430 -225952923 + tRNA-Val-GTG tRNA tRNA 1 73 -3 554 56 0 0 chr1 16713080 16713151 -225951202 + tRNA-Gly-GGG tRNA tRNA 4 74 0 2331 106 7 0 chr1 16713824 16714127 -225950226 + AluSx SINE Alu 1 305 -7 334 232 0 0 chr1 16714380 16714449 -225949904 + tRNA-His-CAC tRNA tRNA 4 72 -3 596 167 0 0 chr1 16714896 16714998 -225949355 - AluSg/x SINE Alu -16 294 193 710 237 91 49 chr1 16715012 16715320 -225949033 - L1ME2 LINE L1 -13 6151 5831 313 304 155 0 chr1 16715406 16715554 -225948799 - L1ME2 LINE L1 -531 5631 5461 706 110 0 0 chr1 16715557 16715657 -225948696 + AluSc SINE Alu 80 179 -130 559 154 0 0 chr1 16715652 16715743 -225948610 + AluJb SINE Alu 209 299 -13 * 414 274 29 20 chr1 16715745 16715949 -225948404 - L1ME2 LINE L1 -709 5469 5264 8190 51 9 0 chr1 16715963 16717914 -225946439 - L1PA8 LINE L1 0 6172 4293 390 290 156 25 chr1 16717915 16717981 -225946372 - L1ME2 LINE L1 -891 5255 5199 4669 174 21 13 chr1 16717981 16718893 -225945460 - MER49 LTR ERV1 0 923 5 390 290 156 25 chr1 16718893 16719064 -225945289 - L1ME2 LINE L1 -947 5199 4987 702 278 130 39 chr1 16720578 16721085 -225943268 - L1M4 LINE L1 -899 5247 4695 2482 88 8 0 chr1 16721168 16721520 -225942833 + THE1A LTR MaLR 1 355 0 1107 179 24 32 chr1 16721697 16721943 -225942410 + MLT1A1 LTR MaLR 122 365 0 331 200 51 120 chr1 16722827 16723002 -225941351 + MER20 DNA MER1_type 1 163 -56 354 329 19 12 chr1 16723086 16723247 -225941106 - L2 LINE L2 -802 2512 2351 551 56 0 0 chr1 16723740 16723812 -225940541 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 630 194 72 0 chr1 16724867 16725006 -225939347 + U1 snRNA snRNA 3 151 -14 376 176 0 0 chr1 16725505 16725573 -225938780 - tRNA-His-CAC tRNA tRNA -2 73 6 2152 132 0 13 chr1 16725623 16725933 -225938420 - AluSx SINE Alu -6 306 1 552 68 0 0 chr1 16726620 16726694 -225937659 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 371 236 89 49 chr1 16726714 16726837 -225937516 + FLAM_C SINE Alu 1 128 -5 571 247 195 21 chr1 16727055 16727215 -225937138 - L1MEc LINE L1 -4356 2040 1909 1866 152 6 40 chr1 16727215 16727537 -225936816 - AluSx SINE Alu -1 311 1 571 247 195 21 chr1 16727537 16727663 -225936690 - L1MEc LINE L1 -4487 1909 1704 1782 68 5 5 chr1 16727727 16727948 -225936405 + AluY SINE Alu 1 221 -90 667 307 11 80 chr1 16727977 16728426 -225935927 + PRIMA41-int LTR ERV1 4072 4489 -3267 311 308 42 11 chr1 16728499 16728679 -225935674 + PRIMA41-int LTR ERV1 4588 4738 -3018 303 28 0 0 chr1 16779617 16779653 -225884700 + (CA)n Simple_repeat Simple_repeat 2 37 0 2101 128 0 0 chr1 16782323 16782628 -225881725 - AluSx SINE Alu 0 305 1 560 279 29 29 chr1 16783350 16783522 -225880831 + MIR SINE MIR 34 205 -57 511 241 60 60 chr1 16785097 16785263 -225879090 + MIR SINE MIR 20 185 -77 468 250 109 0 chr1 16785340 16785468 -225878885 - MER63 DNA MER1_type -68 768 1 29 0 0 0 chr1 16785929 16785958 -225878395 + AT_rich Low_complexity Low_complexity 1 29 0 2120 174 14 3 chr1 16786242 16786603 -225877750 - MLT1A1 LTR MaLR 0 365 1 388 214 106 88 chr1 16788247 16788360 -225875993 + MIR SINE MIR 48 162 -100 903 180 51 88 chr1 16788360 16788577 -225875776 + MER63A DNA MER1_type 1 209 -1 388 214 106 88 chr1 16788577 16788660 -225875693 + MIR SINE MIR 162 242 -20 197 308 63 63 chr1 16790062 16790205 -225874148 - L2 LINE L2 -225 3047 2905 1823 172 0 25 chr1 16790343 16790663 -225873690 + AluJo SINE Alu 1 312 0 1942 149 10 0 chr1 16790902 16791190 -225873163 - AluSx SINE Alu -21 291 1 339 268 94 0 chr1 16791200 16791214 -225873139 - L1MA10 LINE L1 -2 6332 6319 1164 216 50 84 chr1 16791214 16791654 -225872699 - L1ME2 LINE L1 -8 6156 5732 193 318 61 53 chr1 16791680 16791812 -225872541 + L2 LINE L2 3136 3268 -4 207 69 0 0 chr1 16792657 16792686 -225871667 + (TG)n Simple_repeat Simple_repeat 1 29 0 183 282 0 0 chr1 16793721 16793760 -225870593 + L2 LINE L2 3148 3186 -86 193 248 368 0 chr1 16793828 16793945 -225870408 - MIR SINE MIR -90 172 13 2458 77 3 10 chr1 16794442 16794755 -225869598 + AluY SINE Alu 1 311 0 291 351 68 14 chr1 16795762 16795910 -225868443 - L2 LINE L2 -2 3270 3115 279 0 0 0 chr1 16796024 16796055 -225868298 + (TG)n Simple_repeat Simple_repeat 1 31 0 1158 184 128 3 chr1 16797252 16797540 -225866813 - MER33 DNA MER1_type 0 324 1 431 265 176 10 chr1 16798234 16798438 -225865915 - Charlie5 DNA MER1_type -27 2585 2348 195 129 0 0 chr1 16799312 16799343 -225865010 + (TCC)n Simple_repeat Simple_repeat 3 33 0 613 255 148 5 chr1 16801929 16802125 -225862228 + MIR SINE MIR 36 259 -3 705 298 109 42 chr1 16802148 16802969 -225861384 - L2 LINE L2 -163 3109 2216 411 294 70 35 chr1 16805049 16805250 -225859103 + L3 LINE CR1 1369 1576 -1 2163 107 55 0 chr1 16805258 16805549 -225858804 + AluSg SINE Alu 1 307 -3 242 248 262 41 chr1 16806335 16806480 -225857873 - MIR SINE MIR -3 259 83 2172 55 0 4 chr1 16806869 16807124 -225857229 - AluY SINE Alu -7 304 51 258 32 0 0 chr1 16807157 16807188 -225857165 + (TG)n Simple_repeat Simple_repeat 2 32 0 837 273 59 70 chr1 16807360 16807906 -225856447 - L1MEd LINE L1 -5141 978 439 333 278 131 5 chr1 16807920 16808111 -225856242 - L1MEd LINE L1 -5903 216 2 864 115 37 84 chr1 16809345 16809393 -225854960 - L1MB3 LINE L1 -3 6180 6131 2273 107 7 3 chr1 16809393 16809693 -225854660 - AluSp SINE Alu -12 301 1 864 115 37 84 chr1 16809693 16809835 -225854518 - L1MB3 LINE L1 -52 6131 5999 233 274 128 39 chr1 16810628 16810730 -225853623 + L2 LINE L2 3183 3293 -20 22 0 0 0 chr1 16810894 16810916 -225853437 + AT_rich Low_complexity Low_complexity 1 22 0 331 277 9 62 chr1 16811743 16811855 -225852498 - L2 LINE L2 -11 3261 3156 23 0 0 0 chr1 16812473 16812496 -225851857 + AT_rich Low_complexity Low_complexity 1 23 0 3333 46 16 2 chr1 16812496 16812929 -225851424 - L1PA5 LINE L1 0 6154 5716 2142 279 32 17 chr1 16812929 16813418 -225850935 - MER69 DNA AcHobo -1866 660 157 2320 117 3 0 chr1 16813418 16813718 -225850635 - AluSx SINE Alu -11 301 1 2142 279 32 17 chr1 16813718 16813878 -225850475 - MER69 DNA AcHobo -2369 157 1 1708 182 57 25 chr1 16815118 16815164 -225849189 - L1MB3 LINE L1 -210 5973 5930 2478 70 3 3 chr1 16815164 16815462 -225848891 - AluY SINE Alu -13 298 1 1708 182 57 25 chr1 16815462 16815817 -225848536 - L1MB3 LINE L1 -253 5930 5559 1140 293 75 19 chr1 16815830 16816308 -225848045 + L2 LINE L2 2288 2792 -522 1060 201 116 157 chr1 16816308 16816651 -225847702 + MLT1A1 LTR MaLR 1 326 -70 2001 154 3 6 chr1 16816651 16816963 -225847390 - AluSx SINE Alu -1 311 1 1060 201 116 157 chr1 16816963 16817032 -225847321 + MLT1A1 LTR MaLR 326 396 0 552 301 125 28 chr1 16817087 16817439 -225846914 + L2 LINE L2 2888 3273 -40 384 223 97 0 chr1 16817835 16817938 -225846415 + MER81 DNA DNA 2 114 0 420 277 15 8 chr1 16818520 16818650 -225845703 + MER94 DNA DNA 2 132 -2 291 281 34 0 chr1 16819351 16819440 -225844913 + L2 LINE L2 3181 3272 0 299 278 80 53 chr1 16819529 16819716 -225844637 - MIR3 SINE MIR -8 200 9 237 267 85 80 chr1 16820065 16820241 -225844112 + MIR SINE MIR 77 253 -9 194 133 0 0 chr1 16820852 16820882 -225843471 - L2 LINE L2 -18 3295 3266 817 148 0 125 chr1 16821164 16821380 -225842973 + MER53 DNA DNA 1 189 0 183 42 0 0 chr1 16823103 16823127 -225841226 + (A)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr1 16823438 16823461 -225840892 + (TA)n Simple_repeat Simple_repeat 2 24 0 2604 30 0 7 chr1 16823475 16823775 -225840578 + AluY SINE Alu 1 298 -13 295 211 39 29 chr1 16824336 16824440 -225839913 - MLT1E2 LTR MaLR -200 305 201 488 233 0 92 chr1 16824692 16824855 -225839498 - MLT1E2 LTR MaLR -469 157 10 503 250 152 34 chr1 16824998 16825202 -225839151 - MIR SINE MIR -23 239 12 408 297 21 21 chr1 16826361 16826506 -225837847 + MIR SINE MIR 20 164 -98 625 216 30 129 chr1 16827827 16827859 -225836494 - MIR SINE MIR -18 244 210 1713 183 7 13 chr1 16827859 16828160 -225836193 + AluJo SINE Alu 1 299 -13 625 216 30 129 chr1 16828160 16828391 -225835962 - MIR SINE MIR -52 210 7 1130 184 60 0 chr1 16829841 16830059 -225834294 + LTR49 LTR ERV1 1 231 -364 674 119 25 17 chr1 16830068 16830186 -225834167 + AluSq/x SINE Alu 23 141 -171 2411 65 3 19 chr1 16830559 16830869 -225833484 - AluY SINE Alu -6 305 1 28 29 0 0 chr1 16831308 16831343 -225833010 + AT_rich Low_complexity Low_complexity 1 35 0 1344 266 148 43 chr1 16831435 16832013 -225832340 + L2 LINE L2 2282 2798 -515 2164 116 7 0 chr1 16832013 16832490 -225831863 - AluSq SINE Alu 0 484 6 1344 266 148 43 chr1 16832490 16832677 -225831676 + L2 LINE L2 2798 2964 -349 2283 102 0 13 chr1 16832677 16832992 -225831361 - AluY SINE Alu 0 311 1 1344 266 148 43 chr1 16832992 16833132 -225831221 + L2 LINE L2 2964 3308 -5 416 241 36 66 chr1 16833153 16833319 -225831034 + MIR SINE MIR 9 169 -93 192 208 42 0 chr1 16833297 16833345 -225831008 + L2 LINE L2 3216 3265 -7 * 242 365 10 0 chr1 16833940 16834044 -225830309 + L3 LINE CR1 1376 1480 -97 1618 163 39 14 chr1 16834303 16834586 -225829767 + AluJo SINE Alu 1 290 -22 231 114 0 0 chr1 16834591 16834626 -225829727 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 263 179 60 0 chr1 16835076 16835143 -225829210 + CT-rich Low_complexity Low_complexity 2 72 0 2505 82 0 0 chr1 16835243 16835547 -225828806 - AluSg SINE Alu -6 304 1 2332 103 0 0 chr1 16836039 16836331 -225828022 + AluSg SINE Alu 1 292 -18 211 209 23 0 chr1 16836771 16836814 -225827539 + L2 LINE L2 3224 3267 -5 253 304 137 25 chr1 16837601 16837762 -225826591 + MIR SINE MIR 77 255 -7 898 282 72 54 chr1 16838446 16838955 -225825398 + L2 LINE L2 2659 3157 -156 2372 86 0 3 chr1 16838955 16839245 -225825108 + AluSx SINE Alu 1 289 -23 192 111 0 0 chr1 16839248 16839284 -225825069 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 898 282 72 54 chr1 16839284 16839419 -225824934 + L2 LINE L2 3158 3310 -3 597 239 0 0 chr1 16839474 16839591 -225824762 - FRAM SINE Alu -43 133 17 491 294 95 12 chr1 16839634 16839865 -225824488 - MIR SINE MIR -12 250 3 597 303 117 26 chr1 16840071 16840490 -225823863 + L2 LINE L2 2624 3117 -196 1908 134 14 10 chr1 16840490 16840781 -225823572 - AluJo SINE Alu -20 292 1 597 303 117 26 chr1 16840781 16840975 -225823378 + L2 LINE L2 3117 3292 -21 180 224 20 41 chr1 16844080 16844129 -225820224 - MIR SINE MIR -73 135 88 277 294 0 0 chr1 16844613 16844681 -225819672 + MIR SINE MIR 36 103 -105 2249 80 28 0 chr1 16844877 16845163 -225819190 - AluSg SINE Alu -16 294 1 302 183 14 0 chr1 16848985 16849056 -225815297 + CT-rich Low_complexity Low_complexity 1 72 0 360 43 0 0 chr1 16849399 16849445 -225814908 + (CA)n Simple_repeat Simple_repeat 1 46 0 342 0 0 0 chr1 16854560 16854598 -225809755 + (CA)n Simple_repeat Simple_repeat 1 38 0 233 177 242 0 chr1 16856231 16856293 -225808060 + L2 LINE L2 3123 3199 -73 288 267 86 48 chr1 16856363 16856468 -225807885 + L2 LINE L2 3139 3247 -25 2222 116 0 10 chr1 16856583 16856894 -225807459 - AluSc SINE Alu -1 308 1 257 304 156 30 chr1 16857164 16857401 -225806952 + L2 LINE L2 2124 2390 -924 261 234 123 64 chr1 16858117 16858288 -225806065 + L3b LINE CR1 1202 1382 -201 197 0 71 0 chr1 16858320 16858348 -225806005 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 686 276 6 17 chr1 16859426 16859600 -225804753 + MER5B DNA MER1_type 7 178 0 2271 100 0 3 chr1 16860350 16860649 -225803704 - AluSg SINE Alu -12 298 1 1802 168 7 10 chr1 16860799 16861097 -225803256 + AluJo SINE Alu 1 297 -15 386 227 163 7 chr1 16861099 16861240 -225803113 - MIR SINE MIR 0 262 100 256 339 24 16 chr1 16861246 16861373 -225802980 - L2 LINE L2 -788 2526 2399 198 327 0 0 chr1 16861941 16861996 -225802357 - L2 LINE L2 -2 3270 3216 446 265 170 27 chr1 16863588 16863956 -225800397 + L2 LINE L2 2628 3069 -244 389 187 13 0 chr1 16863991 16864066 -225800287 - MLT1A1 LTR MaLR -1 364 289 213 39 0 0 chr1 16864193 16864219 -225800134 + (TG)n Simple_repeat Simple_repeat 2 27 0 639 273 118 30 chr1 16864398 16864540 -225799813 + MLT1J1 LTR MaLR 12 140 -306 2204 115 3 0 chr1 16864540 16864836 -225799517 + AluSq SINE Alu 1 297 -16 639 273 118 30 chr1 16864836 16864990 -225799363 + MLT1J1 LTR MaLR 140 334 -112 378 309 73 6 chr1 16865376 16865541 -225798812 + MER117 DNA MER1_type 4 179 -18 182 338 6 88 chr1 16865586 16865746 -225798607 - MER5A DNA MER1_type -26 163 17 294 266 0 0 chr1 16865824 16865903 -225798450 + MIR SINE MIR 135 213 -49 420 322 75 11 chr1 16867404 16867578 -225796775 + MIR SINE MIR 35 219 -43 201 311 29 29 chr1 16868118 16868221 -225796132 + L2 LINE L2 2951 3053 -219 186 43 0 0 chr1 16868232 16868255 -225796098 + (TC)n Simple_repeat Simple_repeat 2 24 0 195 184 26 0 chr1 16868383 16868421 -225795932 + L2 LINE L2 3267 3305 -8 303 287 75 78 chr1 16868591 16869068 -225795285 - LTR33 LTR ERVL -5 516 41 1332 194 81 4 chr1 16869488 16869746 -225794607 + AluJo SINE Alu 1 278 -34 300 250 40 0 chr1 16870923 16871023 -225793330 + L1ME4a LINE L1 6014 6117 -4 305 191 0 29 chr1 16871167 16871235 -225793118 + MIR SINE MIR 173 238 -24 202 204 45 0 chr1 16871202 16871246 -225793107 + L2 LINE L2 3210 3255 -17 * 1208 160 109 138 chr1 16871666 16872042 -225792311 - MLT1A1 LTR MaLR 0 365 1 598 265 38 11 chr1 16872073 16872258 -225792095 - MIR SINE MIR -36 226 37 801 181 0 43 chr1 16872430 16872568 -225791785 - FLAM_C SINE Alu -1 132 1 1677 168 6 44 chr1 16872570 16872886 -225791467 - AluJb SINE Alu -8 304 1 199 217 0 50 chr1 16873510 16873570 -225790783 - MIR SINE MIR -64 144 88 610 92 0 82 chr1 16876176 16876274 -225788079 + HY4 scRNA scRNA 1 90 -3 540 68 0 0 chr1 16876274 16876347 -225788006 + (GAA)n Simple_repeat Simple_repeat 1 73 0 216 329 42 114 chr1 16876508 16876658 -225787695 + L2 LINE L2 2825 2953 -360 2811 29 0 0 chr1 16876658 16876972 -225787381 - AluYb8 SINE Alu -4 314 1 216 329 42 114 chr1 16876972 16877058 -225787295 + L2 LINE L2 2953 3044 -269 3442 118 14 27 chr1 16877058 16877576 -225786777 - MER9 LTR ERVK 0 511 1 1534 203 17 48 chr1 16878444 16878798 -225785555 - MLT1A1 LTR MaLR -2 363 21 312 280 83 32 chr1 16878966 16879338 -225785015 + L1ME3A LINE L1 4346 4736 -1410 776 235 28 33 chr1 16879366 16879579 -225784774 - MER20 DNA MER1_type -4 215 4 319 278 61 33 chr1 16879581 16879793 -225784560 + L1ME3A LINE L1 5653 5870 -300 248 197 66 26 chr1 16880527 16880603 -225783750 - MADE1 DNA Mariner 0 80 2 229 172 17 17 chr1 16881220 16881278 -225783075 + (TA)n Simple_repeat Simple_repeat 1 58 0 243 0 0 0 chr1 16881656 16881683 -225782670 + (CA)n Simple_repeat Simple_repeat 2 28 0 211 270 99 45 chr1 16882800 16882911 -225781442 + MIR SINE MIR 31 147 -115 25 0 0 0 chr1 16883010 16883035 -225781318 + AT_rich Low_complexity Low_complexity 1 25 0 218 218 40 97 chr1 16885647 16885771 -225778582 - MIR3 SINE MIR -6 202 86 224 279 81 54 chr1 16886259 16886370 -225777983 + L2 LINE L2 3145 3258 -14 195 297 40 0 chr1 16886855 16886929 -225777424 + MIR SINE MIR 185 261 -1 25 51 0 0 chr1 16886929 16886968 -225777385 + AT_rich Low_complexity Low_complexity 1 39 0 1395 245 58 65 chr1 16888584 16889442 -225774911 + L1ME1 LINE L1 3127 3978 -2168 1166 261 61 27 chr1 16889495 16890019 -225774334 + L1ME1 LINE L1 5394 5935 -231 606 289 34 15 chr1 16890305 16890509 -225773844 - MER63A DNA MER1_type 0 210 3 718 192 151 32 chr1 16891336 16891555 -225772798 - THE1C LTR MaLR -130 245 1 1270 236 13 3 chr1 16891555 16891856 -225772497 - L1 LINE L1 -2372 5193 4890 1666 128 0 12 chr1 16891860 16892110 -225772243 + THE1C LTR MaLR 129 375 0 1113 254 95 41 chr1 16892120 16893131 -225771222 - L1 LINE L1 -3552 4013 2932 8982 129 54 0 chr1 16893231 16894570 -225769783 + THE1A-int LTR MaLR 164 1574 -6 1229 195 4 16 chr1 16894575 16894821 -225769532 + THE1A LTR MaLR 1 243 -112 934 145 101 0 chr1 16894946 16895105 -225769248 - AluSg SINE Alu -130 180 6 192 111 0 0 chr1 16895115 16895151 -225769202 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 2351 68 0 0 chr1 16895153 16895432 -225768921 - AluY SINE Alu -32 279 1 9537 85 12 7 chr1 16895437 16896688 -225767665 + HERVL LTR ERVL 119 1375 -4279 352 222 108 0 chr1 16897028 16897143 -225767210 + AluSp SINE Alu 127 206 -97 261 61 0 0 chr1 16897517 16897550 -225766803 - U1 snRNA snRNA 0 165 133 1627 184 134 74 chr1 16897550 16898088 -225766265 - LTR4 LTR ERV1 0 596 27 828 203 14 0 chr1 16898678 16898848 -225765505 - AluJb SINE Alu 0 311 140 1751 111 148 0 chr1 16898989 16899259 -225765094 - AluSg SINE Alu 0 310 1 2145 121 0 0 chr1 16899328 16899629 -225764724 + AluSg SINE Alu 1 301 0 24 32 0 0 chr1 16899664 16899695 -225764658 + AT_rich Low_complexity Low_complexity 1 31 0 2125 126 0 0 chr1 16899864 16900157 -225764196 + AluSx SINE Alu 3 295 -17 21 36 0 0 chr1 16900178 16900206 -225764147 + AT_rich Low_complexity Low_complexity 1 28 0 655 167 20 0 chr1 16900209 16900311 -225764042 - FRAM SINE Alu -33 143 40 607 189 0 0 chr1 16900316 16900422 -225763931 - FLAM_A SINE Alu -19 123 18 743 176 339 80 chr1 16900477 16900716 -225763637 - AluJo SINE Alu 0 302 2 21 36 0 0 chr1 16900716 16900744 -225763609 + AT_rich Low_complexity Low_complexity 1 28 0 498 33 0 0 chr1 16901801 16901861 -225762492 + (GA)n Simple_repeat Simple_repeat 1 60 0 1636 122 0 24 chr1 16902034 16902197 -225762156 - AluSx SINE Alu -14 298 141 249 33 0 0 chr1 16902197 16902227 -225762126 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1636 122 0 24 chr1 16902227 16902309 -225762044 - AluSx SINE Alu -171 141 59 434 227 80 13 chr1 16902795 16902945 -225761408 - REP3 LTR ERV -401 161 2 1543 0 0 0 chr1 16903451 16903615 -225760738 - U1 snRNA snRNA -1 164 1 285 319 51 14 chr1 16903999 16904137 -225760216 - Charlie4 DNA MER1_type -4 1957 1815 2857 131 37 4 chr1 16904717 16905199 -225759154 + MER41E LTR ERV1 15 512 0 331 350 83 0 chr1 16905314 16905471 -225758882 + HAL1 LINE L1 527 696 -1811 2554 142 49 46 chr1 16905487 16906057 -225758296 - LTR8A LTR ERV1 0 727 156 849 170 16 27 chr1 16906069 16906257 -225758096 - MER1B DNA MER1_type -2 337 152 1714 310 67 26 chr1 16907136 16908049 -225756304 - PRIMA41-int LTR ERV1 -2057 5699 4750 2564 102 8 0 chr1 16908174 16908526 -225755827 - THE1A LTR MaLR 0 355 1 522 307 118 31 chr1 16908610 16909118 -225755235 + L1M4 LINE L1 4696 5247 -899 1904 57 53 50 chr1 16910310 16910634 -225753719 + AluY SINE Alu 1 325 0 459 299 141 25 chr1 16910962 16911101 -225753252 + L1M4 LINE L1 4987 5108 -1038 2778 13 0 0 chr1 16911101 16911412 -225752941 + AluYb8 SINE Alu 1 311 -7 459 299 141 25 chr1 16911412 16911446 -225752907 + L1M4 LINE L1 5108 5137 -1009 4990 172 30 16 chr1 16911446 16912352 -225752001 + MER49 LTR ERV1 5 923 0 459 299 141 25 chr1 16912352 16912418 -225751935 + L1M4 LINE L1 5137 5255 -891 4998 39 0 0 chr1 16912419 16913090 -225751263 + L1P LINE L1 4293 4963 -1183 559 182 0 0 chr1 16913096 16913208 -225751145 + AluSg/x SINE Alu 193 304 0 310 232 0 0 chr1 16913645 16913714 -225750639 - tRNA-His-CAC tRNA tRNA -3 72 4 2087 112 10 22 chr1 16913967 16914281 -225750072 - AluSx SINE Alu -2 310 1 627 42 0 0 chr1 16914945 16915017 -225749336 - tRNA-Gly-GGG tRNA tRNA -2 72 1 234 81 0 0 chr1 16916639 16916676 -225747677 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 504 153 0 0 chr1 16916682 16916754 -225747599 - tRNA-Val-GTG tRNA tRNA -4 72 1 2002 104 4 14 chr1 16918079 16918359 -225745994 + AluSg SINE Alu 1 277 -33 180 0 0 0 chr1 16918361 16918381 -225745972 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 381 301 45 40 chr1 16919054 16919230 -225745123 - MIR SINE MIR -36 226 50 497 285 180 10 chr1 16919505 16919705 -225744648 - MIR SINE MIR -26 236 3 203 189 0 0 chr1 16919729 16919766 -225744587 + T-rich Low_complexity Low_complexity 1 37 0 212 0 0 35 chr1 16921138 16921167 -225743186 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr1 16921380 16921402 -225742951 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 16922024 16922044 -225742309 + (T)n Simple_repeat Simple_repeat 1 20 0 342 0 0 0 chr1 16923088 16923126 -225741227 + (TTA)n Simple_repeat Simple_repeat 1 38 0 554 195 57 0 chr1 16923809 16923932 -225740421 - MER3 DNA MER1_type 0 209 80 243 269 46 56 chr1 16924345 16924453 -225739900 + L2 LINE L2 3159 3265 -7 1425 143 6 146 chr1 16925697 16925890 -225738463 - AluJb SINE Alu 0 327 109 2367 80 0 0 chr1 16925890 16926189 -225738164 - AluSx SINE Alu -13 299 1 1425 143 6 146 chr1 16926189 16926200 -225738153 - AluJb SINE Alu -218 109 98 2147 118 0 7 chr1 16926200 16926497 -225737856 - AluSx SINE Alu -17 295 1 1425 143 6 146 chr1 16926497 16926531 -225737822 - AluJb SINE Alu -229 98 61 2306 97 0 0 chr1 16926531 16926831 -225737522 + AluSq SINE Alu 1 300 -13 2017 118 17 0 chr1 16926831 16927127 -225737226 + AluSq SINE Alu 1 301 -12 1425 143 6 146 chr1 16927127 16927258 -225737095 - AluJb SINE Alu -264 63 1 850 179 39 5 chr1 16927259 16927466 -225736887 + Charlie5 DNA MER1_type 2372 2585 -27 206 79 0 26 chr1 16929120 16929158 -225735195 + (CGGG)n Simple_repeat Simple_repeat 3 39 0 226 279 88 44 chr1 16931664 16931800 -225732553 + L2 LINE L2 2965 3106 -166 200 217 11 130 chr1 16931937 16931995 -225732358 + L2 LINE L2 3191 3236 -36 2308 100 0 3 chr1 16931995 16932305 -225732048 + AluSx SINE Alu 1 309 -3 200 217 11 130 chr1 16932305 16932338 -225732015 + L2 LINE L2 3236 3271 -1 211 309 108 36 chr1 16932354 16932493 -225731860 - MIR3 SINE MIR -47 161 13 * 438 181 21 32 chr1 16932491 16932585 -225731768 + MER5A DNA MER1_type 14 106 -83 1648 95 0 13 chr1 16932769 16933000 -225731353 + AluSg/x SINE Alu 85 312 0 201 250 0 83 chr1 16934749 16934869 -225729484 + G-rich Low_complexity Low_complexity 5 114 0 207 219 47 0 chr1 16935806 16935870 -225728483 - MIR SINE MIR -87 121 55 222 37 0 0 chr1 16936202 16936229 -225728124 + (CGG)n Simple_repeat Simple_repeat 2 28 0 214 232 49 0 chr1 16936446 16936528 -225727825 + (CGGG)n Simple_repeat Simple_repeat 4 89 0 250 234 39 0 chr1 16939482 16939559 -225724794 + G-rich Low_complexity Low_complexity 5 84 0 278 316 13 19 chr1 16940190 16940345 -225724008 + (TG)n Simple_repeat Simple_repeat 2 155 0 223 233 128 12 chr1 16940878 16940964 -225723389 + MIR SINE MIR 45 140 -68 350 302 63 16 chr1 16941939 16942065 -225722288 + MIR SINE MIR 31 162 -100 2120 103 34 0 chr1 16942113 16942404 -225721949 - AluSq SINE Alu -12 301 1 2165 69 0 35 chr1 16942413 16942726 -225721627 - AluSc SINE Alu 0 303 1 208 368 23 0 chr1 16942761 16942848 -225721505 + MIR SINE MIR 173 261 -1 208 347 199 0 chr1 16942964 16943160 -225721193 - L3 LINE CR1 -63 1514 1280 236 400 103 0 chr1 16943494 16943669 -225720684 + MIR SINE MIR 5 197 -65 219 273 70 0 chr1 16943817 16943915 -225720438 + MIR SINE MIR 63 145 -63 22 35 0 0 chr1 16944187 16944216 -225720137 + GC_rich Low_complexity Low_complexity 1 29 0 248 198 10 59 chr1 16944458 16944559 -225719794 + (CCCCG)n Simple_repeat Simple_repeat 5 100 0 2357 60 17 3 chr1 16944989 16945289 -225719064 - AluSg SINE Alu -6 304 1 199 332 122 53 chr1 16945380 16945627 -225718726 + L2 LINE L2 2914 3177 -95 477 225 58 68 chr1 16945633 16945824 -225718529 - MER53 DNA DNA 0 189 1 2122 134 0 0 chr1 16945892 16946199 -225718154 - AluSx SINE Alu -5 307 1 186 231 115 0 chr1 16946350 16946402 -225717951 - MIR SINE MIR -137 125 68 180 243 0 0 chr1 16947711 16947748 -225716605 + MIR SINE MIR 218 254 -8 1740 169 0 3 chr1 16947999 16948294 -225716059 + AluJo SINE Alu 18 311 -1 22 56 0 0 chr1 16948319 16948355 -225715998 + AT_rich Low_complexity Low_complexity 1 36 0 684 324 89 0 chr1 16948358 16948583 -225715770 - MIR SINE MIR -1 261 17 207 286 146 56 chr1 16948750 16948928 -225715425 + MIR SINE MIR 51 244 -18 1915 122 21 11 chr1 16950544 16950831 -225713522 + AluSx SINE Alu 1 290 -22 300 246 185 20 chr1 16950851 16951046 -225713307 - L2 LINE L2 -200 3113 2887 1193 130 29 0 chr1 16951123 16951294 -225713059 - AluSg/x SINE Alu -18 292 119 2165 107 4 4 chr1 16951289 16951580 -225712773 - AluSg SINE Alu -29 281 1 2460 75 0 3 chr1 16951593 16951902 -225712451 - AluSg SINE Alu -3 307 2 204 246 0 62 chr1 16952695 16952760 -225711593 - MIR SINE MIR -86 122 62 521 236 36 0 chr1 16952793 16952903 -225711450 + L2 LINE L2 3155 3268 -4 188 267 33 0 chr1 16952904 16952964 -225711389 + MIR SINE MIR 130 191 -71 2293 86 3 68 chr1 16953006 16953382 -225710971 - AluSx SINE Alu 0 355 1 1345 80 5 37 chr1 16953909 16954096 -225710257 - AluSp SINE Alu -8 305 125 2427 82 0 22 chr1 16957862 16958180 -225706173 - AluY SINE Alu 0 311 1 1401 164 30 4 chr1 16960199 16960462 -225703891 + L1M2 LINE L1 5389 5658 -633 901 77 17 0 chr1 16961026 16961143 -225703210 - AluSg/x SINE Alu -26 284 166 459 206 0 0 chr1 16962241 16962314 -225702039 + tRNA-Val-GTG tRNA tRNA 1 73 -3 598 54 0 0 chr1 16963960 16964034 -225700319 + tRNA-Gly-GGG tRNA tRNA 1 74 0 2236 108 10 0 chr1 16964707 16965003 -225699350 + AluSx SINE Alu 1 299 -13 322 188 14 14 chr1 16965255 16965324 -225699029 + tRNA-His-CAC tRNA tRNA 4 72 -3 639 146 0 0 chr1 16965777 16965873 -225698480 - AluSg/x SINE Alu -22 288 193 645 231 94 49 chr1 16965887 16966194 -225698159 - L1ME2 LINE L1 -13 6151 5831 294 297 155 0 chr1 16966280 16966428 -225697925 - L1ME2 LINE L1 -531 5631 5461 735 120 0 0 chr1 16966431 16966531 -225697822 + AluSg/x SINE Alu 82 181 -131 557 169 0 0 chr1 16966526 16966615 -225697738 + AluJb SINE Alu 209 297 -15 * 443 205 73 58 chr1 16966615 16966820 -225697533 - L1ME2 LINE L1 -703 5471 5264 8753 47 8 2 chr1 16966843 16968692 -225695661 - L1PA4 LINE L1 -4 6151 4293 449 283 146 25 chr1 16968693 16968759 -225695594 - L1ME2 LINE L1 -891 5255 5198 4781 184 19 14 chr1 16968759 16969674 -225694679 - MER49 LTR ERV1 0 923 5 449 283 146 25 chr1 16969674 16969847 -225694506 - L1ME2 LINE L1 -948 5198 4987 1976 57 54 50 chr1 16970175 16970497 -225693856 - AluY SINE Alu 0 323 1 542 294 124 38 chr1 16971689 16972196 -225692157 - L1M4 LINE L1 -899 5247 4697 2557 99 8 0 chr1 16972281 16972633 -225691720 + THE1A LTR MaLR 1 355 0 1678 299 71 31 chr1 16972758 16973671 -225690682 + PRIMA41-int LTR ERV1 4750 5699 -2057 895 140 18 29 chr1 16974567 16974738 -225689615 + MER1B DNA MER1_type 169 337 -2 2701 140 49 46 chr1 16974750 16975320 -225689033 + LTR8A LTR ERV1 156 727 0 329 350 83 0 chr1 16975336 16975493 -225688860 - HAL1 LINE L1 -1811 696 527 2998 129 37 4 chr1 16975608 16976090 -225688263 - MER41E LTR ERV1 0 512 15 264 304 58 22 chr1 16976669 16976807 -225687546 + Charlie4 DNA MER1_type 1815 1957 -4 1544 0 0 0 chr1 16977191 16977355 -225686998 + U1 snRNA snRNA 1 164 -1 428 227 80 13 chr1 16977861 16978011 -225686342 + REP3 LTR ERV 2 161 -401 1683 122 0 24 chr1 16978497 16978579 -225685774 + AluSx SINE Alu 59 141 -171 249 33 0 0 chr1 16978579 16978609 -225685744 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1683 122 0 24 chr1 16978609 16978772 -225685581 + AluSx SINE Alu 141 298 -14 393 22 0 0 chr1 16978945 16978991 -225685362 + (TC)n Simple_repeat Simple_repeat 1 46 0 21 36 0 0 chr1 16980047 16980075 -225684278 + AT_rich Low_complexity Low_complexity 1 28 0 695 176 340 80 chr1 16980075 16980313 -225684040 + AluJo SINE Alu 2 301 -1 583 189 0 0 chr1 16980368 16980474 -225683879 + FLAM_A SINE Alu 18 123 -19 635 167 20 0 chr1 16980479 16980581 -225683772 + FRAM SINE Alu 40 143 -33 21 36 0 0 chr1 16980584 16980612 -225683741 + AT_rich Low_complexity Low_complexity 1 28 0 2161 135 0 0 chr1 16980622 16980926 -225683427 - AluSx SINE Alu -6 306 3 24 32 0 0 chr1 16981095 16981126 -225683227 + AT_rich Low_complexity Low_complexity 1 31 0 2050 136 4 0 chr1 16981150 16981461 -225682892 - AluSg SINE Alu 0 312 1 2065 108 54 14 chr1 16981530 16981826 -225682527 + AluSg SINE Alu 1 308 -2 2148 237 10 22 chr1 16981878 16982384 -225681969 + MER87 LTR ERV1 12 511 -30 481 143 119 0 chr1 16982385 16982469 -225681884 + AluSg/x SINE Alu 209 302 -8 1939 125 87 0 chr1 16983277 16983564 -225680789 + AluSx SINE Alu 1 312 0 813 196 14 0 chr1 16983706 16983876 -225680477 + AluJb SINE Alu 140 311 0 1442 198 134 71 chr1 16984466 16985002 -225679351 + LTR4 LTR ERV1 27 596 0 230 91 0 0 chr1 16985002 16985035 -225679318 + U1 snRNA snRNA 133 165 0 290 157 56 192 chr1 16985423 16985583 -225678770 - AluJb SINE Alu -96 206 88 261 57 0 0 chr1 16985876 16985911 -225678442 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2221 107 0 0 chr1 16985911 16986192 -225678161 - AluSx SINE Alu -31 281 1 269 252 98 49 chr1 16986409 16986532 -225677821 - L2 LINE L2 0 3272 3144 1889 109 26 8 chr1 16989877 16990144 -225674209 + AluSx SINE Alu 1 272 -40 513 88 0 0 chr1 16990144 16990212 -225674141 + Alu SINE Alu 227 294 -15 983 169 45 0 chr1 16990587 16990765 -225673588 + MER5A DNA MER1_type 3 188 -1 216 256 37 12 chr1 16991369 16991451 -225672902 + MIR3 SINE MIR 113 196 -12 376 349 77 13 chr1 16992233 16992468 -225671885 - MIR SINE MIR -12 250 1 211 293 0 0 chr1 16992786 16992844 -225671509 + (CTA)n Simple_repeat Simple_repeat 1 58 0 348 236 143 14 chr1 16992844 16992984 -225671369 - MIR SINE MIR -9 253 96 27 0 0 0 chr1 16993286 16993313 -225671040 + AT_rich Low_complexity Low_complexity 1 27 0 1085 212 82 0 chr1 16993579 16993848 -225670505 + Charlie1a DNA MER1_type 49 339 -1116 248 139 47 0 chr1 16998517 16998560 -225665793 - MLT1C LTR MaLR -323 144 100 724 298 109 42 chr1 16998689 16999510 -225664843 + L2 LINE L2 2216 3109 -163 613 255 148 5 chr1 16999533 16999729 -225664624 - MIR SINE MIR -3 259 36 195 42 0 0 chr1 16999810 16999834 -225664519 + (TGG)n Simple_repeat Simple_repeat 1 24 0 185 273 23 0 chr1 17000852 17000896 -225663457 + L2 LINE L2 3137 3181 -91 195 129 0 0 chr1 17002320 17002351 -225662002 + (GGA)n Simple_repeat Simple_repeat 3 33 0 431 265 176 10 chr1 17003225 17003429 -225660924 + Charlie5 DNA MER1_type 2348 2585 -27 1168 184 128 3 chr1 17004124 17004412 -225659941 + MER33 DNA MER1_type 1 324 0 477 333 52 0 chr1 17006888 17007023 -225657330 - MIR3 SINE MIR -39 169 28 447 281 88 26 chr1 17007304 17007496 -225656857 - MER63A DNA MER1_type -6 204 1 199 319 162 29 chr1 17007795 17008005 -225656348 + L2 LINE L2 2456 2693 -621 396 243 0 0 chr1 17008013 17008124 -225656229 + GA-rich Low_complexity Low_complexity 3 113 0 552 15 0 0 chr1 17008158 17008223 -225656130 + (CA)n Simple_repeat Simple_repeat 1 65 0 767 293 92 38 chr1 17008227 17008760 -225655593 + L2 LINE L2 2736 3306 -7 2381 88 0 3 chr1 17008760 17009056 -225655297 + AluSx SINE Alu 1 295 -17 1479 228 110 21 chr1 17009888 17010124 -225654229 - MLT1C LTR MaLR 0 467 253 195 42 0 0 chr1 17010124 17010148 -225654205 + (TCTCTG)n Simple_repeat Simple_repeat 6 29 0 1479 228 110 21 chr1 17010148 17010340 -225654013 - MLT1C LTR MaLR -214 253 1 2037 191 71 9 chr1 17010565 17011031 -225653322 + MLT1D LTR MaLR 4 498 -7 200 333 17 0 chr1 17011114 17011174 -225653179 + L2 LINE L2 3249 3309 -4 245 296 177 44 chr1 17011178 17011404 -225652949 - L2 LINE L2 -25 3288 3033 253 319 176 5 chr1 17012243 17012459 -225651894 - MIR SINE MIR -8 254 2 348 349 94 0 chr1 17014181 17014330 -225650023 - MIR SINE MIR -37 225 63 1710 265 137 44 chr1 17014339 17015149 -225649204 - L2 LINE L2 0 3313 2352 3040 106 7 2 chr1 17015149 17015575 -225648778 - MSTA LTR MaLR 0 428 1 1710 265 137 44 chr1 17015575 17015981 -225648372 - L2 LINE L2 -961 2352 1985 472 168 37 19 chr1 17016016 17016177 -225648176 + GA-rich Low_complexity Low_complexity 3 166 0 189 157 0 186 chr1 17016485 17016555 -225647798 + MIR SINE MIR 206 262 0 752 264 169 34 chr1 17017283 17017727 -225646626 + MLT1J LTR MaLR 7 510 -1 214 384 88 32 chr1 17017740 17017865 -225646488 + L2 LINE L2 3137 3268 -4 198 0 0 0 chr1 17018890 17018912 -225645441 + (CTTG)n Simple_repeat Simple_repeat 3 24 0 4553 217 63 44 chr1 17019251 17021621 -225642732 - L1MD2 LINE L1 -2 6357 3920 216 337 36 12 chr1 17021690 17021773 -225642580 - L2 LINE L2 -21 3292 3208 2279 74 0 11 chr1 17023482 17023792 -225640561 - AluY SINE Alu 0 307 1 369 276 69 18 chr1 17023903 17024064 -225640289 - MIR SINE MIR -47 215 42 241 216 0 0 chr1 17024668 17024719 -225639634 + LTR67 LTR ERVL 507 557 0 256 275 113 12 chr1 17024776 17024856 -225639497 + L2 LINE L2 3212 3299 -14 225 65 0 0 chr1 17025401 17025432 -225638921 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 492 296 13 20 chr1 17026188 17026353 -225638000 - MER5A DNA MER1_type -3 186 12 1586 110 196 8 chr1 17027072 17027327 -225637026 - AluSg1 SINE Alu -6 303 1 389 320 40 0 chr1 17027505 17027655 -225636698 - MIR SINE MIR -35 227 72 3211 246 68 33 chr1 17027671 17028122 -225636231 - L1ME3A LINE L1 -13 6157 5724 2514 114 78 24 chr1 17028122 17028533 -225635820 - Tigger2a DNA MER2_type -1 433 1 3211 246 68 33 chr1 17028533 17030178 -225634175 - L1ME3A LINE L1 -446 5724 3217 2141 103 23 7 chr1 17030178 17030479 -225633874 - AluSp SINE Alu -7 306 1 3211 246 68 33 chr1 17030479 17030851 -225633502 - L1ME3A LINE L1 -2953 3217 2860 774 100 0 54 chr1 17031176 17031306 -225633047 - FLAM_A SINE Alu 0 142 20 358 197 0 0 chr1 17032145 17032216 -225632137 + MER97b DNA MER1_type? 535 605 -448 429 269 45 64 chr1 17032597 17032861 -225631492 + MER97c DNA MER1_type? 812 1070 -20 312 263 97 9 chr1 17033131 17033245 -225631108 + MIR SINE MIR 38 161 -101 226 180 0 60 chr1 17033717 17033767 -225630586 - L2 LINE L2 -8 3264 3218 650 0 38 0 chr1 17035069 17035149 -225629204 + (TTTTC)n Simple_repeat Simple_repeat 3 85 0 253 91 0 0 chr1 17035149 17035182 -225629171 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 2041 136 9 19 chr1 17035182 17035498 -225628855 - AluSq SINE Alu 0 313 1 3763 114 28 12 chr1 17035538 17036144 -225628209 - MER39B LTR ERV1 -37 616 1 762 240 39 20 chr1 17036846 17037050 -225627303 - MIR SINE MIR -12 250 43 321 304 15 24 chr1 17038009 17038133 -225626220 - MIR SINE MIR -63 145 37 8467 39 5 1 chr1 17038552 17040271 -225624082 - L1PA4 LINE L1 -136 6019 4293 456 279 146 25 chr1 17040272 17040338 -225624015 - L1M4 LINE L1 -891 5255 5198 4720 188 19 14 chr1 17040338 17041253 -225623100 - MER49 LTR ERV1 0 923 5 456 279 146 25 chr1 17041253 17041426 -225622927 - L1M4 LINE L1 -948 5198 4987 1976 57 54 50 chr1 17041754 17042057 -225622296 - AluY SINE Alu 0 304 1 486 286 149 40 chr1 17043249 17043746 -225620607 - L1M4 LINE L1 -899 5247 4697 2533 102 8 0 chr1 17043831 17044183 -225620170 + THE1A LTR MaLR 1 355 0 1100 183 33 21 chr1 17044360 17044601 -225619752 + MLT1A1 LTR MaLR 122 365 0 311 185 0 98 chr1 17045567 17045659 -225618694 + MER20 DNA MER1_type 81 163 -56 387 287 30 24 chr1 17045740 17045904 -225618449 - L2 LINE L2 -799 2515 2351 604 54 0 0 chr1 17046397 17046471 -225617882 + tRNA-Glu-GAG tRNA tRNA 1 74 -1 594 197 73 0 chr1 17047527 17047664 -225616689 + U1 snRNA snRNA 5 151 -14 357 191 0 0 chr1 17048158 17048226 -225616127 - tRNA-His-CAC tRNA tRNA -2 73 6 2039 119 3 14 chr1 17048293 17048586 -225615767 - AluSx SINE Alu -22 290 1 604 54 0 0 chr1 17049275 17049349 -225615004 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 492 177 105 57 chr1 17049373 17049497 -225614856 + FLAM_C SINE Alu 2 131 -12 418 266 73 24 chr1 17049714 17049874 -225614479 - L1MEc LINE L1 -4356 2040 1889 1824 162 3 34 chr1 17049874 17050195 -225614158 - AluSx SINE Alu -1 311 1 418 266 73 24 chr1 17050195 17050311 -225614042 - L1MEc LINE L1 -4507 1889 1715 554 222 6 99 chr1 17250311 17250473 -225413880 - AluJo SINE Alu -115 197 51 2272 241 144 24 chr1 17250484 17251256 -225413097 + L2 LINE L2 1979 2890 -423 2187 107 39 39 chr1 17251256 17251620 -225412733 + THE1B LTR MaLR 1 364 0 2272 241 144 24 chr1 17251620 17251810 -225412543 + L2 LINE L2 2890 3056 -257 263 259 0 0 chr1 17251846 17251904 -225412449 - L1MC3 LINE L1 -506 7279 7222 1853 139 23 116 chr1 17251907 17252177 -225412176 + MLT1B LTR MaLR 1 218 -172 2148 113 29 45 chr1 17252177 17252558 -225411795 + THE1C LTR MaLR 1 375 0 1853 139 23 116 chr1 17252558 17252717 -225411636 + MLT1B LTR MaLR 218 390 0 383 232 82 57 chr1 17252778 17252972 -225411381 + L2 LINE L2 3114 3312 -1 698 310 48 59 chr1 17252982 17253094 -225411259 + L1M4 LINE L1 2135 2247 -3899 2295 97 7 7 chr1 17253094 17253383 -225410970 + AluSx SINE Alu 1 289 -23 426 69 0 0 chr1 17253384 17253442 -225410911 + (TA)n Simple_repeat Simple_repeat 1 58 0 698 310 48 59 chr1 17253442 17253685 -225410668 + L1M4 LINE L1 2246 2488 -3658 8998 206 76 35 chr1 17253685 17257235 -225407118 + L1MDa LINE L1 189 3888 -2652 3162 98 2 22 chr1 17257269 17257757 -225406596 - L1PB1 LINE L1 0 6151 5674 2429 149 19 3 chr1 17257762 17258406 -225405947 + L1PB1 LINE L1 5005 5658 -493 509 254 39 22 chr1 17258402 17258583 -225405770 + L1MDa LINE L1 3877 4060 -2480 * 759 294 87 25 chr1 17258577 17259185 -225405168 + L1M4 LINE L1 2473 3118 -3028 430 202 48 24 chr1 17259190 17259314 -225405039 + L1M4 LINE L1 3154 3280 -2866 1646 170 46 20 chr1 17259662 17260070 -225404283 - L1M4 LINE L1 -608 5576 5165 2280 88 0 0 chr1 17260070 17260376 -225403977 - AluY SINE Alu 0 306 1 1646 170 46 20 chr1 17260376 17260429 -225403924 - L1M4 LINE L1 -1019 5165 5115 504 221 115 8 chr1 17260642 17260764 -225403589 + MER63A DNA MER1_type 50 184 -26 301 275 22 0 chr1 17261139 17261230 -225403123 - MIR SINE MIR -82 126 34 258 308 106 40 chr1 17261551 17261778 -225402575 + MIR SINE MIR 7 248 -14 2071 108 0 0 chr1 17262035 17262295 -225402058 + AluSq SINE Alu 1 260 -53 216 0 0 0 chr1 17262342 17262366 -225401987 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 421 287 0 0 chr1 17262513 17262628 -225401725 + MIR3 SINE MIR 86 200 -8 294 220 68 0 chr1 17262948 17263049 -225401304 + MIR SINE MIR 31 149 -59 604 251 82 11 chr1 17264690 17264873 -225399480 + MER91A DNA MER1_type 1 196 0 1932 161 0 13 chr1 17265112 17265428 -225398925 + AluJb SINE Alu 1 312 0 2444 217 11 4 chr1 17265582 17266102 -225398251 - L1ME3 LINE L1 -24 6138 5615 1979 155 53 0 chr1 17266103 17266445 -225397908 - THE1C LTR MaLR -1 374 15 1198 208 26 55 chr1 17266447 17266740 -225397613 - L1ME3 LINE L1 -541 5621 5340 2018 159 0 10 chr1 17266740 17267041 -225397312 - AluSx SINE Alu -13 299 2 1198 208 26 55 chr1 17267041 17267126 -225397227 - L1ME3 LINE L1 -822 5340 5254 190 336 50 57 chr1 17267177 17267317 -225397036 - L2 LINE L2 0 3272 3134 1358 137 11 95 chr1 17268418 17268565 -225395788 + LTR51 LTR ERV1 5 163 -508 1992 107 54 18 chr1 17268565 17268845 -225395508 + AluSx SINE Alu 1 290 -22 2335 93 0 7 chr1 17268853 17269155 -225395198 + AluY SINE Alu 1 300 -11 1358 137 11 95 chr1 17269155 17269282 -225395071 + LTR51 LTR ERV1 170 264 -407 245 107 0 54 chr1 17269285 17269520 -225394833 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1991 154 6 6 chr1 17269520 17269832 -225394521 - AluJb SINE Alu 0 547 1 1763 191 21 67 chr1 17269833 17270267 -225394086 + LTR51 LTR ERV1 258 671 0 352 270 17 9 chr1 17271511 17271626 -225392727 + MIR SINE MIR 24 139 -69 265 284 0 12 chr1 17271652 17271733 -225392620 + MIR SINE MIR 85 164 -98 428 262 5 48 chr1 17271959 17272146 -225392207 + CT-rich Low_complexity Low_complexity 2 180 0 205 185 62 31 chr1 17272129 17272194 -225392159 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 * 188 195 0 0 chr1 17272990 17273031 -225391322 + MIR SINE MIR 81 121 -87 597 328 39 19 chr1 17273697 17273953 -225390400 + MIR SINE MIR 2 262 0 200 269 0 0 chr1 17274100 17274152 -225390201 + L2 LINE L2 3262 3313 0 406 300 95 24 chr1 17275470 17275549 -225388804 - MIR SINE MIR -10 252 180 2098 140 0 0 chr1 17275549 17275859 -225388494 + AluSx SINE Alu 1 310 0 406 300 95 24 chr1 17275859 17275987 -225388366 - MIR SINE MIR -82 180 28 195 265 159 62 chr1 17276000 17276358 -225387995 - L2 LINE L2 -558 2756 2364 232 286 18 0 chr1 17276861 17276917 -225387436 + L2 LINE L2 3256 3312 -1 * 413 297 39 13 chr1 17276914 17277069 -225387284 + MIR3 SINE MIR 43 201 -7 1112 215 31 78 chr1 17277755 17278045 -225386308 - PABL_B LTR ERV1 0 667 365 1877 177 3 0 chr1 17278045 17278344 -225386009 - AluSx SINE Alu -11 301 2 1112 215 31 78 chr1 17278344 17278534 -225385819 - PABL_B LTR ERV1 -302 365 53 678 262 126 15 chr1 17278815 17279086 -225385267 + L2 LINE L2 3004 3304 -9 350 313 27 0 chr1 17279710 17279822 -225384531 + MIR SINE MIR 33 147 -115 261 292 28 0 chr1 17279833 17279905 -225384448 + CT-rich Low_complexity Low_complexity 1 74 0 539 207 0 0 chr1 17279913 17280029 -225384324 - AluSg/x SINE Alu -12 298 183 1798 115 0 8 chr1 17280129 17280372 -225383981 - AluY SINE Alu -70 241 1 1946 108 4 22 chr1 17280691 17280863 -225383490 - AluSx SINE Alu -9 303 136 2357 93 0 3 chr1 17280863 17281154 -225383199 - AluSc SINE Alu -19 290 1 1946 108 4 22 chr1 17281154 17281258 -225383095 - AluSx SINE Alu -176 136 32 364 247 164 41 chr1 17281264 17281410 -225382943 + MER5B DNA MER1_type 15 178 0 509 315 28 0 chr1 17281434 17281615 -225382738 + MIR SINE MIR 45 230 -32 454 275 18 54 chr1 17282107 17282274 -225382079 - MIR SINE MIR 0 262 102 1461 209 63 50 chr1 17282794 17283192 -225381161 + MLT1D LTR MaLR 1 403 -102 * 2212 151 41 44 chr1 17283188 17283472 -225380881 + LTR32 LTR ERVL 10 294 -177 2335 95 0 0 chr1 17283472 17283766 -225380587 - AluSg SINE Alu -16 294 1 2212 151 41 44 chr1 17283766 17283917 -225380436 + LTR32 LTR ERVL 294 444 -27 1108 154 0 0 chr1 17283919 17284075 -225380278 - FRAM SINE Alu -22 154 1 642 176 0 8 chr1 17284093 17284212 -225380141 + MLT1D LTR MaLR 388 505 0 227 337 0 0 chr1 17287040 17287123 -225377230 + GA-rich Low_complexity Low_complexity 1 83 0 458 235 112 18 chr1 17287486 17287656 -225376697 + MER5A DNA MER1_type 1 186 -3 2379 91 3 25 chr1 17287656 17287975 -225376378 + AluSx SINE Alu 1 312 0 212 245 19 0 chr1 17287999 17288052 -225376301 + L2 LINE L2 3005 3058 -214 679 224 45 30 chr1 17289645 17289846 -225374507 - MIR SINE MIR -13 249 46 281 317 41 3 chr1 17289941 17290146 -225374207 + MIR SINE MIR 38 252 -10 1935 159 24 3 chr1 17290882 17291177 -225373176 + AluJb SINE Alu 1 301 -11 2197 262 128 22 chr1 17291182 17291915 -225372438 - MER45C DNA AcHobo -678 903 75 2548 60 3 3 chr1 17291915 17292217 -225372136 + AluSp SINE Alu 1 302 -11 2197 262 128 22 chr1 17292217 17292293 -225372060 - MER45C DNA AcHobo -1506 75 8 2307 113 0 6 chr1 17293046 17293357 -225370996 - AluSx SINE Alu -3 309 1 2474 78 3 3 chr1 17293942 17294249 -225370104 - AluY SINE Alu 0 311 5 391 229 229 0 chr1 17294304 17294426 -225369927 + MIR3 SINE MIR 37 186 -22 436 261 121 24 chr1 17295469 17295634 -225368719 - MIR SINE MIR -80 182 2 992 138 32 27 chr1 17295647 17295835 -225368518 + MER53 DNA DNA 1 189 0 473 278 15 0 chr1 17296471 17296604 -225367749 - MIR SINE MIR -36 226 92 1907 126 39 3 chr1 17296606 17296892 -225367461 + AluJo SINE Alu 3 298 -14 27 0 0 0 chr1 17296895 17296922 -225367431 + AT_rich Low_complexity Low_complexity 1 27 0 256 255 10 59 chr1 17296922 17297024 -225367329 - MIR SINE MIR -150 112 16 216 298 19 58 chr1 17297387 17297491 -225366862 + L2 LINE L2 3000 3099 -173 1206 145 77 14 chr1 17297544 17297751 -225366602 - AluJb SINE Alu -6 306 87 348 239 14 6 chr1 17297801 17297936 -225366417 - MER20 DNA MER1_type 0 219 1 215 217 98 43 chr1 17297948 17298040 -225366313 + L2 LINE L2 3168 3264 -8 189 190 0 103 chr1 17298543 17298601 -225365752 + MIR SINE MIR 19 70 -138 1340 170 0 18 chr1 17298734 17298963 -225365390 - AluJb SINE Alu -9 303 79 1875 150 3 6 chr1 17299490 17299803 -225364550 + AluSx SINE Alu 1 312 0 228 234 0 62 chr1 17299869 17299933 -225364420 - L2 LINE L2 0 3313 3254 305 335 76 0 chr1 17299963 17300148 -225364205 + L1MC4a LINE L1 5705 5903 -1905 1831 144 3 7 chr1 17300225 17300523 -225363830 + AluJb SINE Alu 1 297 -15 779 141 127 1 chr1 17300525 17300684 -225363669 + L1MB5 LINE L1 5821 5979 -195 1802 102 72 8 chr1 17300934 17301247 -225363106 - AluJb SINE Alu 0 330 1 564 128 0 0 chr1 17301249 17301335 -225363018 - AluS SINE Alu -2 308 223 1689 124 39 16 chr1 17301335 17301465 -225362888 - AluSx SINE Alu -49 263 138 1831 107 68 7 chr1 17301465 17301745 -225362608 - AluY SINE Alu -14 297 1 1689 124 39 16 chr1 17301745 17301871 -225362482 - AluSx SINE Alu -174 138 1 248 338 75 23 chr1 17302047 17302180 -225362173 + MIR SINE MIR 4 143 -119 244 239 0 0 chr1 17302884 17302930 -225361423 - MER91 DNA MER1_type -149 47 2 342 303 264 0 chr1 17303368 17303523 -225360830 - MER91A DNA MER1_type 0 196 1 191 341 12 0 chr1 17303827 17303909 -225360444 - MIR SINE MIR -115 147 65 207 349 0 0 chr1 17305216 17305279 -225359074 + MIR SINE MIR 90 152 -110 205 300 50 0 chr1 17305427 17305507 -225358846 - MIR SINE MIR -173 89 6 1051 244 123 27 chr1 17306473 17307022 -225357331 + L2 LINE L2 2528 3115 -198 846 116 0 0 chr1 17307024 17307145 -225357208 - AluSg/x SINE Alu -9 301 181 694 183 7 44 chr1 17307163 17307300 -225357053 + L2 LINE L2 3182 3313 0 548 179 11 0 chr1 17307939 17308034 -225356319 + L2 LINE L2 3215 3310 -3 1367 300 220 24 chr1 17308363 17310102 -225354251 + L2 LINE L2 28 2107 -1207 2928 194 75 90 chr1 17310114 17311021 -225353332 + MER63C DNA MER1_type 3 895 -35 1751 197 35 24 chr1 17311021 17311392 -225352961 + ERVL LTR ERVL 1847 2221 -3543 318 108 40 27 chr1 17311434 17311508 -225352845 + C-rich Low_complexity Low_complexity 3 77 0 2235 104 3 0 chr1 17311618 17311926 -225352427 - AluSx SINE Alu -3 309 1 819 259 106 53 chr1 17311926 17312324 -225352029 + L2 LINE L2 2320 2738 -576 189 357 0 0 chr1 17312704 17312774 -225351579 + L2 LINE L2 3185 3254 -18 254 362 9 0 chr1 17312781 17312886 -225351467 - MIR SINE MIR -129 133 28 360 0 0 0 chr1 17313096 17313136 -225351217 + (ATG)n Simple_repeat Simple_repeat 3 42 0 180 262 0 0 chr1 17314191 17314233 -225350120 + L2 LINE L2 3002 3043 -229 241 283 87 11 chr1 17314272 17314364 -225349989 + MIR SINE MIR 99 197 -65 229 326 22 0 chr1 17314792 17314881 -225349472 - MIR SINE MIR -3 259 169 2030 156 43 54 chr1 17314926 17315349 -225349004 - MER83 LTR ERV1 -27 421 4 297 189 68 27 chr1 17315351 17315425 -225348928 - MIR SINE MIR -112 150 74 321 319 49 14 chr1 17315790 17315934 -225348419 - L3 LINE CR1 -101 1476 1328 208 392 59 0 chr1 17316512 17316614 -225347739 - L2 LINE L2 -10 3262 3155 267 280 131 54 chr1 17316629 17316797 -225347556 - MIR SINE MIR -56 206 26 812 248 39 5 chr1 17316866 17317072 -225347281 + MIR SINE MIR 10 222 -40 1568 104 207 4 chr1 17317076 17317327 -225347026 + AluSx SINE Alu 1 302 0 975 158 6 12 chr1 17318203 17318395 -225345958 + AluJo SINE Alu 122 312 0 1766 144 50 13 chr1 17318401 17318699 -225345654 + AluSx SINE Alu 1 309 -3 258 184 42 0 chr1 17318756 17318829 -225345524 - MIR SINE MIR -78 130 54 264 214 51 41 chr1 17321122 17321220 -225343133 - MIR SINE MIR -52 210 112 402 196 82 0 chr1 17321339 17321436 -225342917 - MIR SINE MIR -72 136 32 721 139 88 119 chr1 17321587 17321634 -225342719 - MER53 DNA DNA -1 188 141 2115 111 20 0 chr1 17321634 17321940 -225342413 + AluSx SINE Alu 1 312 0 721 139 88 119 chr1 17321940 17322086 -225342267 - MER53 DNA DNA -48 141 1 287 274 0 53 chr1 17322490 17322585 -225341768 - MIR3 SINE MIR -5 203 114 245 227 0 13 chr1 17322671 17322746 -225341607 + (CAT)n Simple_repeat Simple_repeat 3 76 0 531 279 56 17 chr1 17323808 17323987 -225340366 + MIR SINE MIR 63 248 -14 217 272 247 10 chr1 17323998 17324099 -225340254 - MIR SINE MIR -62 146 37 538 320 0 22 chr1 17324325 17324506 -225339847 - L2 LINE L2 0 3313 3137 1056 276 35 0 chr1 17324511 17324830 -225339523 - L2 LINE L2 -688 2626 2297 222 37 0 0 chr1 17325024 17325051 -225339302 + (GA)n Simple_repeat Simple_repeat 2 28 0 531 132 0 0 chr1 17325491 17325582 -225338771 + (TGGA)n Simple_repeat Simple_repeat 4 94 0 315 146 0 0 chr1 17325644 17325699 -225338654 + (ATG)n Simple_repeat Simple_repeat 1 55 0 335 281 42 0 chr1 17325701 17325797 -225338556 - MIR SINE MIR -10 252 153 2146 115 3 0 chr1 17325916 17326212 -225338141 + AluSg SINE Alu 1 297 -13 2107 125 0 0 chr1 17326292 17326597 -225337756 + AluY SINE Alu 1 305 -6 409 286 226 18 chr1 17326647 17326864 -225337489 + L1MC5 LINE L1 7651 7912 -49 186 308 51 43 chr1 17327521 17327638 -225336715 + MIR SINE MIR 16 133 -75 271 233 233 0 chr1 17327874 17327990 -225336363 + MIR SINE MIR 112 254 -8 210 257 194 7 chr1 17328679 17328823 -225335530 + L2 LINE L2 2921 3091 -181 1104 222 68 0 chr1 17328901 17329108 -225335245 + MER58A DNA MER1_type 4 224 0 195 241 0 56 chr1 17329625 17329679 -225334674 + L2 LINE L2 3010 3060 -212 234 310 0 14 chr1 17329790 17329861 -225334492 + MIR SINE MIR 23 92 -170 1903 134 20 17 chr1 17330071 17330370 -225333983 - AluJb SINE Alu -12 300 1 304 311 41 0 chr1 17330409 17330531 -225333822 + L1ME3A LINE L1 5836 5962 -208 264 245 11 64 chr1 17330586 17330680 -225333673 + L1ME3A LINE L1 5969 6057 -113 234 0 0 0 chr1 17330735 17330761 -225333592 + (TG)n Simple_repeat Simple_repeat 2 27 0 569 295 128 16 chr1 17330868 17331119 -225333234 + L1MC/D LINE L1 5388 5666 -2142 816 252 80 37 chr1 17331217 17331879 -225332474 - L1M4 LINE L1 -748 5398 4766 2045 108 4 0 chr1 17331879 17332156 -225332197 + AluSp SINE Alu 1 278 -35 207 0 0 0 chr1 17332159 17332182 -225332171 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 816 252 80 37 chr1 17332182 17332223 -225332130 - L1M4 LINE L1 -1381 4765 4578 * 1169 223 16 44 chr1 17332220 17332584 -225331769 - L1MCa LINE L1 -5182 1244 891 454 318 47 7 chr1 17333154 17333302 -225331051 + MIR3 SINE MIR 40 193 -15 462 260 90 67 chr1 17333310 17333533 -225330820 + MIR SINE MIR 35 262 0 811 276 29 34 chr1 17333568 17333807 -225330546 + MIR SINE MIR 15 252 -10 249 309 49 12 chr1 17334304 17334385 -225329968 + MIR SINE MIR 62 145 -63 417 251 131 50 chr1 17334446 17334645 -225329708 + MIR SINE MIR 34 248 -14 217 200 60 0 chr1 17334933 17334983 -225329370 - MIR3 SINE MIR -41 167 115 513 235 38 49 chr1 17335061 17335244 -225329109 - MIR SINE MIR -80 182 2 187 345 0 0 chr1 17335571 17335629 -225328724 + L2 LINE L2 3007 3064 -208 1939 98 0 88 chr1 17335694 17336022 -225328331 + AluSx SINE Alu 1 299 -13 335 301 179 0 chr1 17336322 17336518 -225327835 - MIR SINE MIR -18 244 14 642 199 243 24 chr1 17336906 17337112 -225327241 - MIR SINE MIR 0 262 12 408 281 72 0 chr1 17337183 17337322 -225327031 - MIR SINE MIR -37 225 77 923 191 38 6 chr1 17337558 17337741 -225326612 + MER53 DNA DNA 1 189 0 213 324 0 0 chr1 17337830 17337941 -225326412 + GA-rich Low_complexity Low_complexity 2 112 0 2201 99 16 0 chr1 17338033 17338337 -225326016 - AluSx SINE Alu -3 309 1 191 172 109 47 chr1 17338512 17338576 -225325777 - L2 LINE L2 -35 3237 3170 349 328 21 52 chr1 17338682 17338874 -225325479 + MIR SINE MIR 33 218 -44 451 314 21 0 chr1 17339147 17339287 -225325066 + MIR SINE MIR 7 149 -113 282 93 93 0 chr1 17339343 17339397 -225324956 - MIR SINE MIR -61 147 89 423 261 27 0 chr1 17339808 17339919 -225324434 + MER81 DNA DNA 1 114 0 185 297 176 0 chr1 17339962 17340036 -225324317 + MER5A DNA MER1_type 101 187 -2 2261 77 7 0 chr1 17340076 17340374 -225323979 + AluSp SINE Alu 1 300 -13 556 217 26 0 chr1 17340516 17340631 -225323722 - MIR SINE MIR -111 151 34 407 295 16 0 chr1 17341188 17341310 -225323043 - MIR3 SINE MIR -49 159 36 535 291 41 6 chr1 17341368 17341540 -225322813 + MER5B DNA MER1_type 1 178 0 535 250 9 0 chr1 17342245 17342357 -225321996 + MIR SINE MIR 37 149 -59 1808 145 0 3 chr1 17342639 17342921 -225321432 + AluJb SINE Alu 1 281 -31 221 277 60 12 chr1 17343340 17343423 -225320930 + L2 LINE L2 2988 3074 -198 781 240 68 18 chr1 17343652 17343873 -225320480 + MIR SINE MIR 31 262 0 447 241 9 0 chr1 17343864 17343972 -225320381 - MIR SINE MIR -103 159 51 * 364 348 30 7 chr1 17344030 17344165 -225320188 - L3 LINE CR1 -6 1571 1434 930 178 69 25 chr1 17344895 17345097 -225319256 + MER20 DNA MER1_type 6 216 -3 828 200 19 117 chr1 17345416 17345681 -225318672 + MIR SINE MIR 3 241 -21 206 262 85 106 chr1 17346609 17346694 -225317659 + MER5A DNA MER1_type 50 132 -57 2479 68 6 0 chr1 17346694 17347005 -225317348 - AluSp SINE Alu 0 313 1 206 262 85 106 chr1 17347005 17347060 -225317293 + MER5A DNA MER1_type 132 187 -2 412 229 33 66 chr1 17347076 17347147 -225317206 + MIR SINE MIR 26 93 -169 2418 73 0 0 chr1 17347147 17347449 -225316904 - AluY SINE Alu -9 302 1 412 229 33 66 chr1 17347449 17347499 -225316854 + MIR SINE MIR 93 143 -119 368 291 15 37 chr1 17347724 17347858 -225316495 + MIR SINE MIR 20 150 -112 1852 158 0 11 chr1 17348609 17348927 -225315426 + AluJo SINE Alu 1 315 0 454 243 29 73 chr1 17351680 17351816 -225312537 - MER91B DNA MER1_type -60 130 1 284 365 56 9 chr1 17351888 17351995 -225312358 - MIR SINE MIR -135 127 16 530 289 18 18 chr1 17352568 17352734 -225311619 + MIR3 SINE MIR 36 201 -7 837 218 96 5 chr1 17352893 17353081 -225311272 - MER3 DNA MER1_type -4 205 1 868 199 147 11 chr1 17353091 17353282 -225311071 + MER20 DNA MER1_type 3 219 0 224 133 0 158 chr1 17353475 17353671 -225310682 + (CATTC)n Simple_repeat Simple_repeat 2 166 0 488 190 219 0 chr1 17354168 17354305 -225310048 - MER20 DNA MER1_type -52 167 1 578 323 124 9 chr1 17354623 17354849 -225309504 - MIR SINE MIR -10 252 1 225 374 43 17 chr1 17355204 17355319 -225309034 + L2 LINE L2 3092 3209 -63 515 286 104 0 chr1 17355755 17355947 -225308406 - MIR SINE MIR -4 258 47 371 246 1 0 chr1 17356141 17356232 -225308121 + MIR SINE MIR 59 149 -68 322 353 16 27 chr1 17356685 17356872 -225307481 + L2 LINE L2 2839 3023 -249 2079 93 29 4 chr1 17356872 17357176 -225307177 + AluSx SINE Alu 1 311 0 846 224 82 18 chr1 17357313 17357532 -225306821 + MIR SINE MIR 30 262 0 250 348 62 9 chr1 17358079 17358191 -225306162 - MIR SINE MIR -18 244 127 446 292 41 0 chr1 17358205 17358376 -225305977 + L2 LINE L2 2828 3005 -308 1650 173 26 26 chr1 17358376 17358741 -225305612 - AluJb SINE Alu 0 365 1 574 248 110 0 chr1 17358799 17358944 -225305409 - MIR SINE MIR -7 255 95 195 322 103 0 chr1 17359135 17359222 -225305131 + MIR SINE MIR 42 137 -71 217 330 0 19 chr1 17359540 17359646 -225304707 + SUBTEL_sa Satellite Satellite 5 108 -66 222 37 0 0 chr1 17359905 17359932 -225304421 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 385 165 0 18 chr1 17360046 17360155 -225304198 + CT-rich Low_complexity Low_complexity 1 107 0 1731 167 0 0 chr1 17360156 17360432 -225303921 - AluSx SINE Alu 0 312 37 313 311 89 37 chr1 17360514 17360649 -225303704 + L2 LINE L2 3172 3313 0 564 294 6 19 chr1 17360661 17360821 -225303532 + MIR SINE MIR 95 252 -10 246 284 15 0 chr1 17360948 17361015 -225303338 - MIR SINE MIR -103 159 92 331 143 156 0 chr1 17361026 17361103 -225303250 + L2 LINE L2 3225 3313 0 236 157 0 171 chr1 17361073 17361143 -225303210 - L2 LINE L2 -7 3306 3249 * 392 318 0 19 chr1 17361126 17361233 -225303120 - MIR SINE MIR -138 124 20 291 241 0 35 chr1 17362008 17362095 -225302258 - Charlie8 DNA MER1_type -2257 160 77 570 252 12 60 chr1 17362650 17362900 -225301453 + L1M4 LINE L1 2790 3027 -3119 884 179 6 0 chr1 17362902 17363058 -225301295 + FRAM SINE Alu 1 156 -20 2139 95 0 29 chr1 17363061 17363367 -225300986 + AluSg SINE Alu 1 297 -13 653 155 57 17 chr1 17363395 17363662 -225300691 + L1PA5 LINE L1 3001 6152 -3 765 317 17 4 chr1 17363914 17364144 -225300209 + MIR SINE MIR 3 235 -27 259 186 0 0 chr1 17364186 17364229 -225300124 + L2 LINE L2 3257 3299 -14 360 286 86 64 chr1 17365296 17365516 -225298837 - L2 LINE L2 -38 3234 3010 200 194 0 0 chr1 17366066 17366102 -225298251 + (CAGGG)n Simple_repeat Simple_repeat 1 36 0 463 309 67 11 chr1 17366763 17366941 -225297412 + MIR SINE MIR 31 218 -44 320 188 174 0 chr1 17366941 17367010 -225297343 + L1M4 LINE L1 5726 5806 -368 1794 177 7 0 chr1 17367146 17367445 -225296908 - AluJb SINE Alu -11 301 1 359 286 30 126 chr1 17367454 17367685 -225296668 - L1ME LINE L1 -374 5788 5580 697 253 38 105 chr1 17367714 17368106 -225296247 - MLT1J1 LTR MaLR -18 428 63 792 284 27 18 chr1 17368765 17368987 -225295366 + MIR SINE MIR 5 228 -34 2116 114 0 3 chr1 17369188 17369487 -225294866 + AluSc SINE Alu 3 300 -9 268 192 131 30 chr1 17419642 17419741 -225244612 + MLT1K LTR MaLR 458 566 -22 2206 149 25 27 chr1 17419763 17419915 -225244438 + MSTA LTR MaLR 27 178 -250 2378 117 0 0 chr1 17419915 17420224 -225244129 - AluSc SINE Alu 0 309 1 2206 149 25 27 chr1 17420224 17420474 -225243879 + MSTA LTR MaLR 178 428 0 2198 105 72 43 chr1 17420558 17421066 -225243287 - MER51A LTR ERV1 0 634 1 428 274 29 49 chr1 17421086 17421290 -225243063 + LTR4 LTR ERV1 1 200 -396 917 239 18 21 chr1 17421479 17421759 -225242594 + LTR4 LTR ERV1 318 596 0 244 333 76 9 chr1 17422255 17422360 -225241993 + MIR SINE MIR 2 113 -149 1713 191 60 30 chr1 17422360 17422790 -225241563 + MLT1D LTR MaLR 1 443 -62 934 209 120 76 chr1 17422795 17423228 -225241125 - LTR56 LTR ERV1 0 445 11 1684 147 18 42 chr1 17423228 17423514 -225240839 + AluJo SINE Alu 1 279 -33 2457 127 91 8 chr1 17423514 17423908 -225240445 - MSTA LTR MaLR -1 427 1 7829 160 124 2 chr1 17423913 17425377 -225238976 - MLT1J1-int LTR MaLR -6 1635 5 1398 176 111 67 chr1 17425377 17425808 -225238545 + LTR7 LTR ERV1 1 450 0 2866 106 7 58 chr1 17425817 17426268 -225238085 - MSTA LTR MaLR 0 428 1 2259 108 0 22 chr1 17426317 17426631 -225237722 + AluY SINE Alu 1 307 -4 282 179 45 0 chr1 17426644 17426711 -225237642 + MLT1D LTR MaLR 436 505 0 609 63 13 0 chr1 17426940 17427019 -225237334 + MADE1 DNA Mariner 1 80 0 216 312 39 0 chr1 17427228 17427305 -225237048 + MIR SINE MIR 67 146 -116 280 252 58 24 chr1 17427417 17427527 -225236826 - MIR SINE MIR -75 133 25 268 264 27 55 chr1 17427950 17428060 -225236293 - MIR3 SINE MIR -24 184 78 186 203 153 17 chr1 17428153 17428212 -225236141 + L2 LINE L2 3206 3272 0 562 232 119 30 chr1 17428468 17428636 -225235717 - MIR SINE MIR -38 224 42 351 0 0 0 chr1 17428642 17428681 -225235672 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 254 286 78 13 chr1 17429007 17429084 -225235269 - L2 LINE L2 -4 3309 3228 243 311 0 0 chr1 17429191 17429265 -225235088 - MER117 DNA MER1_type -38 159 86 1517 165 4 0 chr1 17429279 17429515 -225234838 + AluJo SINE Alu 57 293 -19 532 273 68 117 chr1 17429981 17430366 -225233987 + L2 LINE L2 2897 3262 -10 2181 94 38 0 chr1 17430761 17431049 -225233304 + AluSc SINE Alu 11 309 0 1054 291 93 29 chr1 17431187 17432065 -225232288 - L2 LINE L2 -8 3305 2366 596 237 16 79 chr1 17432130 17432283 -225232070 - MER20 DNA MER1_type 0 219 58 189 0 0 0 chr1 17432283 17432304 -225232049 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 267 31 0 0 chr1 17432303 17432335 -225232018 + (GA)n Simple_repeat Simple_repeat 2 33 0 596 237 16 79 chr1 17432304 17432403 -225231950 - MER20 DNA MER1_type -161 58 1 544 220 34 0 chr1 17432403 17432521 -225231832 - MIR SINE MIR -55 207 86 354 300 33 67 chr1 17432514 17432568 -225231785 - L2 LINE L2 -946 2368 2314 * 1380 204 126 30 chr1 17432568 17432901 -225231452 + MLT1A1 LTR MaLR 1 365 0 354 300 33 67 chr1 17432901 17433056 -225231297 - L2 LINE L2 -1000 2314 2166 * 1237 246 145 0 chr1 17433053 17433480 -225230873 + L2 LINE L2 1564 2052 -1262 521 273 30 45 chr1 17433528 17433795 -225230558 + L1ME LINE L1 5344 5606 -515 452 126 25 118 chr1 17433826 17433945 -225230408 - L1MC4 LINE L1 -1 8041 7934 219 114 0 0 chr1 17433950 17433985 -225230368 + (TC)n Simple_repeat Simple_repeat 2 36 0 246 268 0 0 chr1 17433992 17434048 -225230305 + (TA)n Simple_repeat Simple_repeat 2 57 0 253 314 0 0 chr1 17434050 17434136 -225230217 + L1MC4 LINE L1 6616 6701 -1341 1480 205 87 5 chr1 17434148 17434538 -225229815 - L1MC4 LINE L1 -110 7932 7511 314 371 8 0 chr1 17434545 17434677 -225229676 + L2 LINE L2 2918 3050 -263 1733 195 48 75 chr1 17434775 17435173 -225229180 + Cheshire DNA MER1_type 66 473 -1947 2306 141 2 80 chr1 17435173 17435385 -225228968 - L1MB3 LINE L1 -10 6173 5946 1521 174 210 14 chr1 17435385 17435799 -225228554 - LTR54B LTR ERV1 -2 496 2 2306 141 2 80 chr1 17435799 17435953 -225228400 - L1MB3 LINE L1 -237 5946 5848 1906 123 0 18 chr1 17435953 17436230 -225228123 - AluSx SINE Alu -10 302 31 2306 141 2 80 chr1 17436230 17436323 -225228030 - L1MB3 LINE L1 -335 5848 5749 1733 195 48 75 chr1 17436323 17436446 -225227907 + Cheshire DNA MER1_type 473 573 -1847 309 222 0 0 chr1 17436444 17436507 -225227846 + Cheshire DNA MER1_type 2355 2417 -3 * 2795 114 2 66 chr1 17436728 17437185 -225227168 + MSTC LTR MaLR 1 428 0 2130 137 0 13 chr1 17437439 17437787 -225226566 - AluSx SINE Alu 0 312 1 180 247 34 124 chr1 17437948 17438037 -225226316 - L3 LINE CR1 -2 1575 1495 469 329 12 0 chr1 17438431 17438592 -225225761 + MIR SINE MIR 95 257 -5 299 222 0 16 chr1 17438968 17439031 -225225322 - MIR SINE MIR -3 259 198 663 203 26 59 chr1 17439054 17439191 -225225162 + MIR SINE MIR 7 140 -122 1449 277 102 24 chr1 17439191 17439693 -225224660 - MER34 LTR ERV1 -1 541 1 663 203 26 59 chr1 17439693 17439708 -225224645 + MIR SINE MIR 140 154 -108 263 258 15 0 chr1 17439708 17439774 -225224579 + MER116 DNA Mariner 1 67 -13 320 266 0 0 chr1 17439788 17439867 -225224486 + MIR SINE MIR 168 246 -16 442 252 0 10 chr1 17439898 17440001 -225224352 - MIR SINE MIR -113 149 48 2273 109 0 7 chr1 17440005 17440309 -225224044 + AluSx SINE Alu 1 302 -10 181 276 26 53 chr1 17440965 17441041 -225223312 + MIR SINE MIR 8 81 -181 363 262 19 0 chr1 17441052 17441159 -225223194 + MER34 LTR ERV1 19 127 -415 239 232 36 0 chr1 17441167 17441223 -225223130 + Tigger5 DNA MER2_type 1 58 -2265 362 167 14 0 chr1 17441233 17441305 -225223048 - Tigger5 DNA MER2_type -6 2317 2245 456 224 82 66 chr1 17441431 17441707 -225222646 + MER34C LTR ERV1 290 525 -17 384 149 0 40 chr1 17441762 17441836 -225222517 + MER34 LTR ERV1 19 89 -453 262 311 16 0 chr1 17441978 17442100 -225222253 + (TG)n Simple_repeat Simple_repeat 1 124 0 208 272 0 27 chr1 17442131 17442315 -225222038 + (TG)n Simple_repeat Simple_repeat 2 180 0 472 280 5 53 chr1 17442360 17442549 -225221804 + (TG)n Simple_repeat Simple_repeat 1 180 0 1064 213 132 67 chr1 17442709 17443062 -225221291 + LTR56 LTR ERV1 1 387 -58 2457 76 0 10 chr1 17443062 17443365 -225220988 + AluY SINE Alu 1 300 -11 1064 213 132 67 chr1 17443365 17443429 -225220924 + LTR56 LTR ERV1 387 445 0 411 135 54 0 chr1 17443370 17443444 -225220909 + LTR23 LTR ERV1 353 430 -7 360 340 85 0 chr1 17444107 17444248 -225220105 - L2 LINE L2 -2 3270 3118 550 219 185 0 chr1 17444260 17444406 -225219947 - MER53 DNA DNA -1 188 16 998 117 25 31 chr1 17444599 17444762 -225219591 - FRAM SINE Alu -5 171 10 932 197 77 12 chr1 17444949 17445221 -225219132 - MSTB LTR MaLR -116 312 1 3543 145 37 30 chr1 17445221 17445488 -225218865 - MSTB-int LTR MaLR 0 1651 1387 2029 79 0 25 chr1 17445488 17445765 -225218588 + AluSp SINE Alu 35 304 -9 3543 145 37 30 chr1 17445765 17446152 -225218201 - MSTB-int LTR MaLR -264 1387 993 2360 93 0 0 chr1 17446158 17446468 -225217885 - AluSx SINE Alu -2 310 1 636 184 37 0 chr1 17446531 17446640 -225217713 + MSTB1 LTR MaLR 320 432 0 1505 98 17 51 chr1 17447072 17447307 -225217046 - MER30 DNA MER1_type -1 229 3 2169 111 0 0 chr1 17447361 17447658 -225216695 + AluSx SINE Alu 1 297 -15 975 249 45 110 chr1 17447899 17447950 -225216403 - LTR24B LTR ERV1 -7 569 516 1861 135 27 3 chr1 17447950 17448247 -225216106 + AluJo SINE Alu 1 304 -8 975 249 45 110 chr1 17448247 17448705 -225215648 - LTR24B LTR ERV1 -60 516 93 29 0 0 0 chr1 17448840 17448869 -225215484 + AT_rich Low_complexity Low_complexity 1 29 0 2302 91 0 0 chr1 17448870 17449167 -225215186 - AluSx SINE Alu -15 297 1 1472 172 0 39 chr1 17449219 17449488 -225214865 - L1MB2 LINE L1 -2 6169 5910 1013 96 0 15 chr1 17449488 17449623 -225214730 + FLAM_C SINE Alu 1 133 0 1472 172 0 39 chr1 17449623 17449638 -225214715 - L1MB2 LINE L1 -261 5910 5896 1916 128 3 26 chr1 17449737 17450043 -225214310 - AluJb SINE Alu -13 299 1 2313 57 20 10 chr1 17450048 17450346 -225214007 - AluY SINE Alu -10 301 1 534 266 70 13 chr1 17450347 17450505 -225213848 - MIR SINE MIR -65 197 31 422 178 11 0 chr1 17450605 17450695 -225213658 + (TG)n Simple_repeat Simple_repeat 1 91 0 255 264 0 14 chr1 17450891 17450963 -225213390 + MIR SINE MIR 66 136 -72 2286 109 0 0 chr1 17451424 17451736 -225212617 + AluSx SINE Alu 1 312 0 396 203 88 92 chr1 17451760 17451856 -225212497 - MER33 DNA MER1_type -2283 302 207 1620 176 0 13 chr1 17451856 17452162 -225212191 - AluJo SINE Alu -10 302 1 396 203 88 92 chr1 17452162 17452282 -225212071 - MER33 DNA MER1_type -2378 207 87 2439 118 52 0 chr1 17452282 17452733 -225211620 + MER1A DNA MER1_type 1 529 0 260 221 195 0 chr1 17452733 17452808 -225211545 - MER33 DNA MER1_type -230 94 5 479 285 91 43 chr1 17452894 17453080 -225211273 + MIR SINE MIR 59 253 -9 2359 159 54 0 chr1 17453118 17453527 -225210826 + MLT2C2 LTR ERVL 2 480 -40 315 331 28 35 chr1 17453947 17454089 -225210264 + L2 LINE L2 2679 2819 -495 410 298 158 14 chr1 17454199 17454414 -225209939 - MIR SINE MIR -3 259 14 410 260 0 55 chr1 17454429 17454556 -225209797 + MIR SINE MIR 132 251 -11 261 280 154 32 chr1 17455206 17455394 -225208959 - MIR SINE MIR -12 250 42 405 285 124 59 chr1 17455481 17455667 -225208686 + MIR SINE MIR 65 262 0 2256 97 3 0 chr1 17456049 17456349 -225208004 + AluSp SINE Alu 1 301 -12 200 359 78 14 chr1 17457278 17457420 -225206933 + L2 LINE L2 2967 3117 -155 21 36 0 0 chr1 17457617 17457645 -225206708 + GC_rich Low_complexity Low_complexity 1 28 0 218 300 0 36 chr1 17458154 17458264 -225206089 + C-rich Low_complexity Low_complexity 2 107 0 185 250 36 18 chr1 17459152 17459208 -225205145 + MIR3 SINE MIR 114 170 -38 1193 179 49 11 chr1 17459700 17459985 -225204368 - MER33 DNA MER1_type -28 296 1 1016 148 133 15 chr1 17459993 17460189 -225204164 - MER20 DNA MER1_type 0 219 1 439 268 155 12 chr1 17460336 17460504 -225203849 - MIR SINE MIR -70 192 1 293 203 34 0 chr1 17460937 17460996 -225203357 + MIR SINE MIR 62 122 -86 866 271 41 22 chr1 17462183 17462497 -225201856 + L2 LINE L2 2825 3144 -169 575 184 73 124 chr1 17462505 17462730 -225201623 - MIR SINE MIR -2 260 38 321 26 0 0 chr1 17462818 17462856 -225201497 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 498 339 22 0 chr1 17463592 17463815 -225200538 + MIR SINE MIR 20 245 -17 348 24 0 0 chr1 17463840 17463881 -225200472 + (TAA)n Simple_repeat Simple_repeat 2 42 0 288 323 30 0 chr1 17464033 17464132 -225200221 - L2 LINE L2 -190 3082 2981 208 333 10 21 chr1 17464255 17464351 -225200002 - L2 LINE L2 -510 2804 2710 629 271 56 113 chr1 17464916 17465339 -225199014 + L2 LINE L2 2548 2994 -278 950 217 27 0 chr1 17465339 17465523 -225198830 + MER5A DNA MER1_type 1 189 0 629 271 56 113 chr1 17465523 17465736 -225198617 + L2 LINE L2 2994 3146 -126 2147 100 0 23 chr1 17465736 17466046 -225198307 + AluSx SINE Alu 3 305 -7 629 271 56 113 chr1 17466046 17466166 -225198187 + L2 LINE L2 3146 3271 -1 198 0 0 0 chr1 17466251 17466273 -225198080 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1933 151 0 3 chr1 17467338 17467643 -225196710 + AluSx SINE Alu 1 304 -8 2305 96 0 16 chr1 17467712 17468026 -225196327 - AluSx SINE Alu -3 309 1 333 258 62 10 chr1 17468108 17468205 -225196148 - MIR3 SINE MIR -49 159 58 436 278 48 16 chr1 17468216 17468403 -225195950 + MER113 DNA MER1_type? 2 194 -327 201 326 70 0 chr1 17468549 17468635 -225195718 - L2 LINE L2 -37 3235 3144 188 241 48 96 chr1 17468779 17468862 -225195491 - MIR3 SINE MIR -127 81 3 2246 94 0 0 chr1 17468880 17469179 -225195174 + AluSx SINE Alu 1 299 -13 384 253 72 98 chr1 17469515 17469709 -225194644 - MER5A DNA MER1_type 0 189 1 198 277 15 15 chr1 17469834 17469899 -225194454 + MER5A DNA MER1_type 125 189 0 865 248 82 32 chr1 17470111 17470396 -225193957 - MLT1B LTR MaLR -23 442 119 2242 97 7 0 chr1 17470396 17470695 -225193658 + AluSx SINE Alu 11 311 -1 865 248 82 32 chr1 17470695 17470821 -225193532 - MLT1B LTR MaLR -346 119 1 334 285 17 76 chr1 17471183 17471355 -225192998 - MER5A DNA MER1_type -2 187 26 1528 172 11 19 chr1 17471416 17471435 -225192918 - AluJb SINE Alu -19 293 275 2134 117 7 0 chr1 17471435 17471743 -225192610 + AluSp SINE Alu 1 310 -3 1528 172 11 19 chr1 17471743 17471990 -225192363 - AluJb SINE Alu -37 275 29 667 185 16 53 chr1 17472316 17472396 -225191957 - MER33 DNA MER1_type -2261 324 243 2519 46 3 0 chr1 17472396 17472702 -225191651 + AluY SINE Alu 1 307 -4 667 185 16 53 chr1 17472702 17472810 -225191543 - MER33 DNA MER1_type -2342 243 143 2088 73 3 31 chr1 17472810 17473128 -225191225 - AluY SINE Alu 0 310 1 1263 148 5 18 chr1 17473130 17473347 -225191006 - AluJo SINE Alu -15 297 84 425 208 57 9 chr1 17473349 17473455 -225190898 - MER33 DNA MER1_type -185 139 29 473 299 55 6 chr1 17474594 17474758 -225189595 - MIR3 SINE MIR -34 174 3 192 275 0 58 chr1 17474902 17474971 -225189382 - MIR3 SINE MIR -9 199 135 469 325 5 41 chr1 17475136 17475333 -225189020 - MIR SINE MIR -3 259 70 2280 97 0 0 chr1 17476169 17476468 -225187885 + AluSg SINE Alu 1 299 -11 2277 100 0 0 chr1 17476544 17476853 -225187500 + AluSx SINE Alu 1 309 -3 337 274 96 35 chr1 17477173 17477393 -225186960 + MIR SINE MIR 14 252 -10 436 268 24 16 chr1 17477530 17477657 -225186696 + MIR3 SINE MIR 49 176 -32 250 289 94 8 chr1 17478962 17479090 -225185263 + MIR3 SINE MIR 15 153 -55 183 354 46 0 chr1 17479455 17479520 -225184833 + MIR SINE MIR 108 175 -87 * 210 361 131 0 chr1 17479493 17479615 -225184738 + L2 LINE L2 3132 3269 -3 1146 152 37 5 chr1 17480077 17480268 -225184085 + MER20 DNA MER1_type 6 202 -17 460 230 9 0 chr1 17480307 17480414 -225183939 - MIR SINE MIR -62 146 40 266 347 41 16 chr1 17480746 17480867 -225183486 + MIR SINE MIR 23 146 -62 194 207 17 0 chr1 17481657 17481715 -225182638 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 769 287 68 53 chr1 17482424 17483015 -225181338 - L2 LINE L2 -1 3271 2667 2224 126 0 0 chr1 17483735 17484045 -225180308 + AluSg SINE Alu 1 310 0 243 211 60 75 chr1 17484053 17484150 -225180203 + L1ME4a LINE L1 5964 6060 -61 1938 167 0 0 chr1 17484150 17484462 -225179891 - AluJo SINE Alu 0 312 1 243 211 60 75 chr1 17484462 17484497 -225179856 + L1ME4a LINE L1 6060 6094 -27 817 250 162 26 chr1 17485236 17485755 -225178598 - L2 LINE L2 -17 3296 2689 333 0 0 0 chr1 17486510 17486547 -225177806 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 331 6 79 chr1 17486765 17486943 -225177410 + MIR SINE MIR 94 258 -4 473 247 0 0 chr1 17487106 17487199 -225177154 - MER81 DNA DNA -21 93 1 384 253 58 86 chr1 17488102 17488197 -225176156 - MIR SINE MIR -82 180 91 2331 92 0 0 chr1 17488197 17488502 -225175851 - AluSg SINE Alu -5 305 1 384 253 58 86 chr1 17488502 17488580 -225175773 - MIR SINE MIR -171 91 12 1854 133 0 23 chr1 17489323 17489658 -225174695 + AluSx SINE Alu 1 312 0 519 297 35 0 chr1 17489966 17490111 -225174242 + MIR SINE MIR 5 154 -108 269 241 46 46 chr1 17490176 17490263 -225174090 - MIR SINE MIR -63 145 59 262 285 42 145 chr1 17491392 17491606 -225172747 + MIR SINE MIR 19 210 -52 858 239 26 90 chr1 17492063 17492331 -225172022 + MIR SINE MIR 1 251 -11 467 299 224 5 chr1 17492557 17492771 -225171582 + MIR SINE MIR 2 262 0 238 213 0 0 chr1 17492840 17492887 -225171466 - L2 LINE L2 0 3313 3267 384 274 98 34 chr1 17493524 17493728 -225170625 + L1MC4a LINE L1 5656 5872 -1936 1181 140 23 0 chr1 17493771 17493942 -225170411 - AluSg/x SINE Alu -17 293 119 1959 145 3 10 chr1 17493956 17494253 -225170100 + AluJo SINE Alu 1 295 -17 272 238 16 82 chr1 17494654 17494776 -225169577 + MIR3 SINE MIR 88 201 -7 2133 118 38 3 chr1 17495010 17495298 -225169055 - AluSx SINE Alu -14 298 1 251 28 28 0 chr1 17495299 17495335 -225169018 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 668 280 55 38 chr1 17495663 17495899 -225168454 + MIR SINE MIR 23 262 0 275 173 0 0 chr1 17496433 17496485 -225167868 + MER117 DNA MER1_type 61 112 -85 792 288 26 34 chr1 17496564 17496930 -225167423 - MLT1I LTR MaLR -32 377 47 2157 118 14 0 chr1 17497038 17497335 -225167018 + AluSx SINE Alu 1 301 -11 277 286 0 8 chr1 17497420 17497539 -225166814 + (CA)n Simple_repeat Simple_repeat 1 118 0 1987 147 4 0 chr1 17498137 17498441 -225165912 + AluJb SINE Alu 5 309 0 1711 150 58 0 chr1 17498441 17498715 -225165638 + AluSx SINE Alu 1 290 -22 2386 74 3 0 chr1 17498718 17499028 -225165325 + AluSp SINE Alu 1 311 0 343 274 83 83 chr1 17499464 17499705 -225164648 - L2 LINE L2 0 3272 3032 * 1093 284 120 27 chr1 17499704 17500246 -225164107 - L2 LINE L2 -13 3300 2726 2039 120 23 23 chr1 17500252 17500561 -225163792 + AluSc SINE Alu 1 309 0 194 189 0 0 chr1 17500563 17500600 -225163753 - L2 LINE L2 -221 3051 3015 2240 116 0 0 chr1 17500618 17500911 -225163442 + AluSg SINE Alu 3 295 -15 935 203 10 0 chr1 17501611 17501808 -225162545 - MER33 DNA MER1_type -116 208 10 736 205 0 8 chr1 17502594 17502716 -225161637 + AluJo/FLAM SINE Alu 1 121 -191 2345 107 0 0 chr1 17502719 17503019 -225161334 - AluSq SINE Alu -13 300 1 1311 130 39 0 chr1 17503352 17503559 -225160794 - L1PA16 LINE L1 0 6166 5952 474 234 0 16 chr1 17503564 17503688 -225160665 - L1MB4 LINE L1 0 6180 6059 2494 70 0 0 chr1 17503695 17503993 -225160360 - AluY SINE Alu -13 298 1 1033 236 54 8 chr1 17504910 17505151 -225159202 + MIR SINE MIR 11 262 0 231 238 79 0 chr1 17505959 17506022 -225158331 + MIR SINE MIR 83 150 -112 871 159 0 7 chr1 17506025 17506163 -225158190 + FLAM_C SINE Alu 1 137 -6 2202 124 0 0 chr1 17506167 17506465 -225157888 + AluSx SINE Alu 1 298 -14 369 234 112 0 chr1 17506465 17506572 -225157781 + MIR SINE MIR 142 260 -2 187 250 23 0 chr1 17506639 17506683 -225157670 + L2 LINE L2 3210 3254 -18 246 272 99 0 chr1 17507129 17507210 -225157143 + MIR SINE MIR 43 131 -77 307 273 0 23 chr1 17507374 17507546 -225156807 + (CATA)n Simple_repeat Simple_repeat 2 169 0 320 272 19 19 chr1 17507560 17507663 -225156690 + (CATA)n Simple_repeat Simple_repeat 4 106 0 259 269 378 0 chr1 17507663 17507819 -225156534 + MIR SINE MIR 36 250 -12 378 293 8 32 chr1 17509384 17509507 -225154846 - L2 LINE L2 -1 3271 3152 198 103 0 0 chr1 17509897 17509926 -225154427 + (T)n Simple_repeat Simple_repeat 1 29 0 729 211 138 32 chr1 17510608 17510668 -225153685 - LTR16A1 LTR ERVL -11 446 394 1844 146 3 32 chr1 17510668 17510977 -225153376 + AluJo SINE Alu 1 300 -12 729 211 138 32 chr1 17510977 17511163 -225153190 - LTR16A1 LTR ERVL -63 394 174 2246 109 7 7 chr1 17511667 17511971 -225152382 - AluSc SINE Alu -1 308 5 1578 123 42 19 chr1 17512170 17512479 -225151874 - MER33 DNA MER1_type 0 324 9 2317 101 3 0 chr1 17513502 17513800 -225150553 + AluSx SINE Alu 1 299 -13 264 216 0 0 chr1 17513827 17513878 -225150475 + L2 LINE L2 3221 3271 -1 271 200 40 0 chr1 17513956 17514031 -225150322 - MER116 DNA Mariner -2 78 1 825 222 58 0 chr1 17514032 17514203 -225150150 - MIR SINE MIR -54 208 28 2236 135 0 0 chr1 17514249 17514561 -225149792 + AluSx SINE Alu 1 312 0 384 320 8 0 chr1 17514904 17515032 -225149321 + MER94 DNA DNA 5 133 -1 184 339 0 0 chr1 17515049 17515111 -225149242 - L2 LINE L2 -86 3186 3125 190 243 0 0 chr1 17515126 17515163 -225149190 + L2 LINE L2 3277 3313 0 267 335 79 13 chr1 17515561 17515713 -225148640 + L1MC4a LINE L1 5763 5924 -1884 2059 89 7 55 chr1 17515730 17516048 -225148305 + AluSg SINE Alu 1 304 0 470 314 63 22 chr1 17516413 17516611 -225147742 - MIR SINE MIR -52 210 6 481 278 37 25 chr1 17517384 17517546 -225146807 + MIR SINE MIR 72 235 -27 1734 138 19 80 chr1 17517823 17517954 -225146399 + AluJo SINE Alu 3 140 -172 2365 88 3 0 chr1 17517954 17518249 -225146104 - AluSx SINE Alu -16 296 1 1734 138 19 80 chr1 17518249 17518442 -225145911 + AluJo SINE Alu 140 307 -5 341 340 101 30 chr1 17518497 17518794 -225145559 - L2 LINE L2 -99 3173 2856 292 290 180 10 chr1 17518830 17519030 -225145323 - L2 LINE L2 -801 2513 2280 2380 84 0 10 chr1 17519077 17519376 -225144977 + AluY SINE Alu 1 296 -15 2025 146 0 16 chr1 17519597 17519912 -225144441 - AluJb SINE Alu -2 310 1 268 337 22 0 chr1 17520803 17520895 -225143458 - MIR3 SINE MIR -34 174 81 183 355 16 0 chr1 17521354 17521416 -225142937 + MIR SINE MIR 157 219 -43 466 250 74 27 chr1 17521515 17521663 -225142690 + L2 LINE L2 3159 3313 0 1524 111 97 62 chr1 17521861 17521995 -225142358 + AluJo SINE Alu 1 129 -183 2454 73 0 7 chr1 17521995 17522298 -225142055 + AluSg1 SINE Alu 1 301 -8 1524 111 97 62 chr1 17522298 17522451 -225141902 + AluJo SINE Alu 129 298 -14 2393 81 0 3 chr1 17522453 17522751 -225141602 + AluSg SINE Alu 1 297 -13 305 315 27 36 chr1 17523433 17523544 -225140809 - MIR SINE MIR -147 115 6 187 242 187 11 chr1 17523804 17523895 -225140458 + MIR SINE MIR 119 225 -37 204 229 177 42 chr1 17524357 17524453 -225139900 + MIR SINE MIR 40 148 -114 190 288 38 25 chr1 17524880 17524960 -225139393 + L2 LINE L2 3141 3221 -92 2340 93 0 26 chr1 17524983 17525295 -225139058 + AluSq SINE Alu 2 305 -8 396 299 26 0 chr1 17525440 17525557 -225138796 - MIR SINE MIR -90 172 53 208 311 179 0 chr1 17526141 17526247 -225138106 + MIR SINE MIR 126 250 -12 2242 99 0 20 chr1 17526458 17526762 -225137591 - AluSq SINE Alu -15 298 1 2015 98 57 14 chr1 17527182 17527479 -225136874 + AluYa5 SINE Alu 2 311 0 1957 149 14 0 chr1 17527532 17527827 -225136526 + AluSx SINE Alu 1 299 -13 1689 168 75 0 chr1 17527838 17528118 -225136235 + AluJo SINE Alu 1 301 -11 2291 113 0 19 chr1 17528118 17528437 -225135916 + AluSq SINE Alu 1 313 0 2939 187 14 50 chr1 17528542 17529152 -225135201 + L1MD1 LINE L1 5560 6190 -52 1555 172 25 21 chr1 17529152 17529431 -225134922 + AluJb SINE Alu 3 282 -30 1864 150 0 21 chr1 17529431 17529718 -225134635 - AluSx SINE Alu -15 297 17 2939 187 14 50 chr1 17529718 17529743 -225134610 + L1MD1 LINE L1 6189 6213 -29 2311 122 3 0 chr1 17529743 17530054 -225134299 - AluSx SINE Alu 0 312 1 2939 187 14 50 chr1 17530054 17530112 -225134241 + L1MD1 LINE L1 6213 6232 -10 2263 112 3 0 chr1 17530112 17530415 -225133938 + AluSp SINE Alu 1 304 -9 950 215 127 16 chr1 17530430 17530746 -225133607 + L1ME1 LINE L1 5811 6161 -5 1039 206 84 4 chr1 17531078 17531364 -225132989 - MER51A LTR ERV1 0 640 334 1701 183 52 0 chr1 17531500 17531789 -225132564 - AluJb SINE Alu 0 312 9 302 278 69 62 chr1 17531959 17532103 -225132250 + L2 LINE L2 3169 3313 0 2221 127 0 3 chr1 17532503 17532803 -225131550 + AluSx SINE Alu 1 299 -13 1308 260 88 8 chr1 17533067 17533432 -225130921 - MLT1E2 LTR MaLR -1 625 232 316 324 77 53 chr1 17533755 17533868 -225130485 + L1M4 LINE L1 2725 2834 -3312 2393 101 3 0 chr1 17533868 17534174 -225130179 + AluSx SINE Alu 1 307 -5 316 324 77 53 chr1 17534174 17534307 -225130046 + L1M4 LINE L1 2834 2977 -3169 1925 163 7 0 chr1 17534344 17534633 -225129720 - AluJb SINE Alu -21 291 1 706 274 18 27 chr1 17534680 17534903 -225129450 + L1ME LINE L1 11 231 -5839 354 151 0 0 chr1 17534944 17534997 -225129356 + Alu SINE Alu 1 53 -248 1618 114 0 0 chr1 17534998 17535209 -225129144 + AluSg/x SINE Alu 92 302 -10 488 250 0 8 chr1 17535212 17535340 -225129013 + L1ME LINE L1 276 402 -5668 229 272 0 12 chr1 17535343 17535424 -225128929 + L1ME LINE L1 518 597 -5473 2140 110 27 0 chr1 17535439 17535739 -225128614 - AluSx SINE Alu -2 310 3 2178 255 48 64 chr1 17535740 17535969 -225128384 + L1ME LINE L1 738 969 -5292 2318 115 3 3 chr1 17535969 17536281 -225128072 - AluSx SINE Alu 0 312 1 2178 255 48 64 chr1 17536281 17536365 -225127988 + L1ME LINE L1 969 1053 -5208 1655 181 3 35 chr1 17536365 17536652 -225127701 + AluJo SINE Alu 1 278 -34 2178 255 48 64 chr1 17536652 17537495 -225126858 + L1ME LINE L1 1053 1910 -4351 1563 142 18 121 chr1 17537495 17537826 -225126527 - AluJo SINE Alu -5 297 1 2178 255 48 64 chr1 17537826 17538126 -225126227 + L1ME LINE L1 1910 2213 -4048 1247 206 24 187 chr1 17538159 17538754 -225125599 + L1M4 LINE L1 3846 4341 -1805 685 227 45 23 chr1 17538792 17538916 -225125437 + L1M4 LINE L1 4108 4228 -1918 1670 142 3 87 chr1 17538916 17538976 -225125377 + AluJo SINE Alu 1 64 -248 2345 87 0 10 chr1 17538976 17539274 -225125079 - AluSp SINE Alu -18 295 1 1670 142 3 87 chr1 17539274 17539372 -225124981 + AluJo SINE Alu 64 169 -143 2022 153 0 0 chr1 17539372 17539660 -225124693 + AluSx SINE Alu 1 288 -24 1670 142 3 87 chr1 17539660 17539685 -225124668 + AluJo SINE Alu 169 304 -8 918 122 7 14 chr1 17539685 17539832 -225124521 + AluJb SINE Alu 159 304 -8 685 227 45 23 chr1 17539832 17539927 -225124426 + L1M4 LINE L1 4228 4332 -1814 757 146 0 46 chr1 17540172 17540302 -225124051 + FLAM_C SINE Alu 2 125 -18 332 275 10 53 chr1 17540314 17540486 -225123867 - L1MC4 LINE L1 -1339 6703 6500 343 143 95 19 chr1 17540503 17540608 -225123745 + L1M4 LINE L1 4314 4426 -1720 1052 168 33 37 chr1 17540611 17540825 -225123528 + AluJb SINE Alu 91 303 -9 1293 183 8 4 chr1 17540825 17541071 -225123282 + L1M4 LINE L1 4446 4692 -1454 1832 94 17 42 chr1 17541231 17541559 -225122794 - AluY SINE Alu 0 321 1 451 272 24 16 chr1 17542138 17542263 -225122090 + L2 LINE L2 3187 3312 -1 1815 106 4 0 chr1 17542449 17542695 -225121658 + AluSx SINE Alu 1 247 -65 1743 148 10 7 chr1 17542695 17542986 -225121367 + AluJb SINE Alu 16 307 -5 181 200 0 50 chr1 17543084 17543124 -225121229 - L2 LINE L2 -15 3298 3261 * 355 263 212 0 chr1 17543090 17543227 -225121126 - MIR SINE MIR -13 249 84 297 340 136 12 chr1 17543264 17543426 -225120927 - MIR SINE MIR -30 232 51 2110 83 45 0 chr1 17544642 17544930 -225119423 + AluSx SINE Alu 2 302 -10 383 223 47 54 chr1 17545144 17545292 -225119061 - MIR SINE MIR -95 167 21 21 0 0 0 chr1 17545826 17545847 -225118506 + AT_rich Low_complexity Low_complexity 1 21 0 784 144 30 23 chr1 17546040 17546172 -225118181 + FLAM_C SINE Alu 1 133 0 1950 76 4 0 chr1 17546192 17546443 -225117910 + AluSg SINE Alu 43 294 -16 1570 173 6 77 chr1 17546794 17546921 -225117432 + AluJo SINE Alu 2 136 -166 1874 128 45 0 chr1 17546921 17547209 -225117144 - AluSx SINE Alu -11 301 1 1570 173 6 77 chr1 17547209 17547405 -225116948 + AluJo SINE Alu 136 302 0 1010 76 0 0 chr1 17547566 17547698 -225116655 + AluSp/q SINE Alu 170 301 -12 1806 152 0 53 chr1 17547712 17548035 -225116318 + AluJo SINE Alu 7 312 0 385 292 22 73 chr1 17548072 17548250 -225116103 - MLT1J LTR MaLR -113 398 230 243 88 0 0 chr1 17549221 17549255 -225115098 + (TTC)n Simple_repeat Simple_repeat 2 35 0 241 260 173 10 chr1 17549638 17549742 -225114611 - Charlie8 DNA MER1_type -2270 147 27 26 0 0 0 chr1 17550172 17550198 -225114155 + AT_rich Low_complexity Low_complexity 1 26 0 607 175 0 124 chr1 17550199 17550336 -225114017 + FLAM_A SINE Alu 1 120 -13 2091 132 7 0 chr1 17550466 17550770 -225113583 + AluSx SINE Alu 1 306 -6 1440 148 26 0 chr1 17551076 17551306 -225113047 - MER46A DNA MER2_type 0 236 1 270 152 22 0 chr1 17551435 17551481 -225112872 - MER57A LTR ERV1 -66 337 291 1374 152 0 0 chr1 17551504 17551721 -225112632 + AluJo SINE Alu 86 302 -10 936 265 109 18 chr1 17551724 17552181 -225112172 - L1ME4a LINE L1 -92 6029 5531 420 313 55 15 chr1 17552369 17552570 -225111783 + MIR SINE MIR 2 210 -52 743 198 148 6 chr1 17555191 17555353 -225109000 - MSTD LTR MaLR 0 396 212 2240 73 3 17 chr1 17555366 17555666 -225108687 - AluSp SINE Alu -17 296 1 994 136 39 0 chr1 17555677 17555831 -225108522 - FRAM SINE Alu -20 156 1 970 165 29 0 chr1 17555832 17556002 -225108351 - MSTD LTR MaLR -221 175 1 352 83 0 0 chr1 17556396 17556444 -225107909 + MIR SINE MIR 204 251 -11 182 390 0 0 chr1 17556492 17556569 -225107784 + MER5A DNA MER1_type 95 171 -18 * 201 355 0 0 chr1 17556507 17556583 -225107770 - MER5B DNA MER1_type -98 80 5 583 223 54 43 chr1 17556689 17556873 -225107480 - MIR3 SINE MIR -4 204 19 1083 125 80 45 chr1 17557174 17557374 -225106979 + AluJo SINE Alu 83 289 -23 239 197 0 33 chr1 17557380 17557441 -225106912 + CT-rich Low_complexity Low_complexity 1 59 0 493 295 2 2 chr1 17558537 17558693 -225105660 + MIR SINE MIR 30 184 -63 2084 120 3 3 chr1 17558959 17559268 -225105085 + AluSx SINE Alu 1 309 -3 1092 172 6 0 chr1 17559408 17559582 -225104771 + FAM SINE Alu 1 175 0 587 156 0 11 chr1 17559601 17559691 -225104662 + FLAM_C SINE Alu 29 117 -26 1755 54 9 5 chr1 17559796 17560020 -225104333 - AluY SINE Alu -86 225 1 2523 50 0 0 chr1 17560100 17560403 -225103950 - AluY SINE Alu -8 303 1 238 256 71 0 chr1 17560453 17560528 -225103825 - L1MC/D LINE L1 -329 5792 5731 1722 112 80 14 chr1 17561116 17561402 -225102951 - AluSx SINE Alu -7 305 1 869 183 59 16 chr1 17561720 17561906 -225102447 + AluJo SINE Alu 115 308 -4 311 282 121 16 chr1 17561962 17562086 -225102267 + MIR SINE MIR 112 248 -14 1582 129 24 87 chr1 17562391 17562724 -225101629 + AluJb SINE Alu 1 312 0 387 0 0 0 chr1 17563311 17563354 -225100999 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 276 317 32 23 chr1 17563472 17563625 -225100728 - MIR SINE MIR -46 162 2 410 229 33 16 chr1 17563871 17563993 -225100360 + L2 LINE L2 2392 2515 -799 258 348 116 0 chr1 17564170 17564282 -225100071 + L2 LINE L2 3146 3270 -2 1218 100 6 0 chr1 17564697 17564867 -225099486 - AluSp SINE Alu -9 304 134 323 257 49 35 chr1 17564867 17565039 -225099314 - MIR SINE MIR -60 202 25 24 106 0 0 chr1 17565277 17565371 -225098982 + GC_rich Low_complexity Low_complexity 1 94 0 299 275 117 8 chr1 17566395 17566515 -225097838 + MIR SINE MIR 51 183 -79 592 243 20 7 chr1 17566542 17566694 -225097659 + MIR SINE MIR 59 212 -50 1891 121 0 0 chr1 17566751 17567015 -225097338 + AluSx SINE Alu 1 264 -48 1793 147 13 19 chr1 17567434 17567747 -225096606 + AluJo SINE Alu 1 311 -1 2094 72 20 46 chr1 17568154 17568460 -225095893 - AluY SINE Alu -13 298 1 221 254 34 17 chr1 17568663 17568753 -225095600 - MIR SINE MIR -64 144 80 1188 135 47 0 chr1 17568783 17568975 -225095378 + AluJb SINE Alu 91 291 -21 421 75 0 0 chr1 17568994 17569047 -225095306 + Alu SINE Alu 1 53 -259 213 39 0 0 chr1 17569064 17569090 -225095263 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2586 39 0 0 chr1 17569279 17569585 -225094768 + AluY SINE Alu 2 307 -4 273 234 9 81 chr1 17569690 17569801 -225094552 - MER5A DNA MER1_type -44 145 43 1893 107 50 0 chr1 17569952 17570233 -225094120 + AluSx SINE Alu 1 295 -17 2309 94 0 0 chr1 17570578 17570876 -225093477 + AluSx SINE Alu 1 298 -14 2141 114 3 3 chr1 17570966 17571274 -225093079 - AluSx SINE Alu -2 310 3 301 324 45 40 chr1 17571789 17571965 -225092388 + MIR3 SINE MIR 17 193 -15 284 290 21 11 chr1 17572445 17572538 -225091815 + MIR3 SINE MIR 93 186 -22 487 314 21 21 chr1 17572844 17573038 -225091315 + MIR SINE MIR 15 208 -54 2237 112 0 0 chr1 17573167 17573472 -225090881 + AluSg SINE Alu 1 305 -5 393 22 0 0 chr1 17573497 17573543 -225090810 + (TG)n Simple_repeat Simple_repeat 1 46 0 2128 113 3 0 chr1 17573544 17573853 -225090500 - AluSq SINE Alu -3 310 1 385 268 10 0 chr1 17573861 17573958 -225090395 - LTR16C LTR ERVL -4 487 390 675 261 32 5 chr1 17574287 17574475 -225089878 - MIR SINE MIR 0 262 70 229 204 20 0 chr1 17574907 17574956 -225089397 + MIR SINE MIR 99 148 -60 196 314 48 19 chr1 17575423 17575528 -225088825 - MIR SINE MIR -74 188 81 2124 115 0 31 chr1 17575670 17575993 -225088360 - AluSq SINE Alu 0 313 1 495 308 103 6 chr1 17575995 17576151 -225088202 + MIR SINE MIR 79 249 -13 1430 157 0 0 chr1 17576163 17576398 -225087955 - AluJb SINE Alu -6 306 72 1980 142 3 0 chr1 17577201 17577504 -225086849 - AluSx SINE Alu -3 309 6 281 270 11 34 chr1 17577533 17577622 -225086731 + MIR SINE MIR 57 143 -119 2173 117 3 0 chr1 17577723 17578030 -225086323 - AluSq SINE Alu -5 308 1 313 321 171 20 chr1 17578251 17578503 -225085850 - L1MC4a LINE L1 -1869 5939 5650 1906 151 0 3 chr1 17578623 17578922 -225085431 + AluSx SINE Alu 1 298 -14 276 100 17 33 chr1 17579222 17579282 -225085071 + (TCCCC)n Simple_repeat Simple_repeat 3 61 0 2079 104 7 0 chr1 17579282 17579569 -225084784 - AluSq SINE Alu -24 289 1 229 26 26 26 chr1 17579780 17579818 -225084535 + MIR SINE MIR 108 145 -117 245 329 98 0 chr1 17580166 17580309 -225084044 + MIR3 SINE MIR 17 173 -35 1873 106 84 0 chr1 17581383 17581657 -225082696 + AluSx SINE Alu 1 297 -15 2144 111 0 3 chr1 17582167 17582465 -225081888 + AluSg SINE Alu 1 297 -13 2207 96 0 0 chr1 17582596 17582931 -225081422 + AluSx SINE Alu 1 335 0 207 295 181 13 chr1 17583012 17583161 -225081192 - L2 LINE L2 -182 3090 2917 1706 129 49 21 chr1 17583621 17583907 -225080446 + AluJb SINE Alu 1 294 -18 1961 144 0 3 chr1 17583912 17584204 -225080149 + AluSx SINE Alu 1 291 -21 429 318 101 28 chr1 17584235 17584452 -225079901 - MIR SINE MIR -19 243 11 383 250 150 14 chr1 17585488 17585628 -225078725 - MIR SINE MIR -15 247 89 861 157 0 0 chr1 17585744 17585878 -225078475 + AluJb SINE Alu 1 134 -178 2227 88 0 3 chr1 17585878 17586174 -225078179 + AluSx SINE Alu 1 295 -17 1945 110 3 17 chr1 17586310 17586610 -225077743 + AluSx SINE Alu 3 298 -14 347 226 65 0 chr1 17586672 17586765 -225077588 - MIR SINE MIR -123 139 41 1822 146 7 3 chr1 17587618 17587905 -225076448 + AluJb SINE Alu 1 288 -24 1908 107 50 11 chr1 17587913 17588193 -225076160 + AluSx SINE Alu 2 291 -21 2339 73 0 3 chr1 17588195 17588483 -225075870 + AluSq SINE Alu 1 320 0 277 30 0 0 chr1 17588483 17588516 -225075837 + (TAA)n Simple_repeat Simple_repeat 2 180 0 221 323 32 0 chr1 17588522 17588584 -225075769 - L2 LINE L2 -18 3295 3232 190 328 35 0 chr1 17589081 17589139 -225075214 + MIR SINE MIR 41 100 -162 2470 75 0 0 chr1 17591454 17591761 -225072592 - AluSx SINE Alu -5 307 1 353 226 349 7 chr1 17591767 17591913 -225072440 - MIR SINE MIR -51 211 16 2114 138 0 3 chr1 17592793 17593104 -225071249 - AluJb SINE Alu -2 310 1 282 370 24 51 chr1 17593561 17593815 -225070538 - L2 LINE L2 0 3313 3067 1844 142 6 29 chr1 17594137 17594448 -225069905 + AluSx SINE Alu 1 304 -8 1816 137 38 20 chr1 17594458 17594751 -225069602 + AluSx SINE Alu 1 298 -14 1612 218 98 26 chr1 17594751 17594911 -225069442 - LTR64 LTR ERVK -23 535 388 1738 128 39 64 chr1 17594911 17595223 -225069130 + AluJo SINE Alu 1 304 -8 1612 218 98 26 chr1 17595223 17595561 -225068792 - LTR64 LTR ERVK -170 388 1 206 277 214 46 chr1 17595561 17595799 -225068554 - L2 LINE L2 -721 2593 2316 601 192 0 96 chr1 17595846 17595992 -225068361 + FLAM_C SINE Alu 1 132 -1 187 359 17 0 chr1 17596022 17596139 -225068214 - L2 LINE L2 -1192 2122 2004 208 269 90 0 chr1 17596155 17596222 -225068131 + MIR SINE MIR 72 144 -118 25 75 0 0 chr1 17596563 17596616 -225067737 + GC_rich Low_complexity Low_complexity 1 53 0 699 279 128 28 chr1 17599349 17599771 -225064582 - L2 LINE L2 0 3272 2799 210 321 46 0 chr1 17600360 17600469 -225063884 + (CCCCAG)n Simple_repeat Simple_repeat 4 117 0 2063 115 10 13 chr1 17603056 17603361 -225060992 + AluSx SINE Alu 1 304 -8 436 249 24 79 chr1 17603436 17603601 -225060752 - MIR SINE MIR -74 188 33 440 214 164 13 chr1 17603630 17603815 -225060538 - MIR SINE MIR -37 225 3 543 267 109 50 chr1 17604962 17605284 -225059069 + MLT1K LTR MaLR 71 411 -177 404 50 0 17 chr1 17605876 17605936 -225058417 + (CA)n Simple_repeat Simple_repeat 2 60 0 183 364 0 0 chr1 17606902 17606968 -225057385 + MIR SINE MIR 106 171 -91 644 283 47 5 chr1 17608484 17608675 -225055678 + MIR SINE MIR 27 225 -37 191 280 65 65 chr1 17609035 17609142 -225055211 + MIR3 SINE MIR 82 188 -20 196 233 0 0 chr1 17609279 17609322 -225055031 + MER5A DNA MER1_type 60 102 -87 194 252 26 0 chr1 17609954 17610017 -225054336 - MIR SINE MIR -60 148 106 1941 125 41 0 chr1 17610051 17610346 -225054007 - AluJb SINE Alu 0 312 6 263 283 244 25 chr1 17611575 17611858 -225052495 + L2 LINE L2 2878 3222 -50 252 233 100 33 chr1 17611914 17612004 -225052349 - MIR SINE MIR -72 190 95 981 104 8 0 chr1 17612014 17612148 -225052205 + AluSx SINE Alu 1 135 -177 2048 123 10 0 chr1 17612148 17612448 -225051905 + AluSx SINE Alu 1 303 -9 2063 110 19 19 chr1 17612448 17612804 -225051549 + AluSg SINE Alu 1 358 0 1029 139 15 69 chr1 17612804 17613006 -225051347 + AluSx SINE Alu 120 310 0 2154 95 0 16 chr1 17613028 17613334 -225051019 + AluSx SINE Alu 1 301 -11 194 277 0 0 chr1 17613354 17613401 -225050952 - MIR SINE MIR -181 81 35 185 333 226 0 chr1 17613649 17613808 -225050545 + L2 LINE L2 2753 2947 -367 2211 114 0 3 chr1 17613923 17614229 -225050124 - AluSq SINE Alu -8 305 1 478 165 0 0 chr1 17614229 17614314 -225050039 - L1MB4 LINE L1 -40 6140 6056 424 116 0 0 chr1 17614322 17614391 -225049962 + AluSq/x SINE Alu 63 131 -172 204 97 0 0 chr1 17614391 17614422 -225049931 + (TA)n Simple_repeat Simple_repeat 2 32 0 782 144 0 0 chr1 17614456 17614567 -225049786 + AluSx SINE Alu 2 112 -201 2329 54 40 7 chr1 17614567 17614865 -225049488 - AluYa5 SINE Alu -3 308 1 1499 100 0 9 chr1 17614866 17615076 -225049277 + AluSx SINE Alu 101 308 -2 304 253 11 0 chr1 17615076 17615167 -225049186 - MER2 DNA MER2_type -138 207 116 1434 189 63 28 chr1 17615240 17615526 -225048827 + AluJb SINE Alu 6 301 -11 1388 126 19 0 chr1 17615559 17615766 -225048587 + AluJo SINE Alu 1 211 -101 225 0 0 0 chr1 17615898 17615923 -225048430 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 655 210 146 36 chr1 17616609 17616828 -225047525 - MIR SINE MIR 0 262 20 2149 118 3 10 chr1 17616830 17617144 -225047209 - AluSx SINE Alu 0 312 1 230 54 0 27 chr1 17617144 17617181 -225047172 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 445 148 0 125 chr1 17617184 17617312 -225047041 - LTR53 LTR ERVL -100 419 308 207 213 21 0 chr1 17617337 17617384 -225046969 - MIR SINE MIR -213 49 2 236 282 32 40 chr1 17617604 17617726 -225046627 - MIR SINE MIR -75 133 29 393 234 78 106 chr1 17617732 17617809 -225046544 + MIR SINE MIR 72 145 -117 2184 103 0 3 chr1 17617809 17618110 -225046243 + AluSx SINE Alu 5 304 -8 393 234 78 106 chr1 17618110 17618173 -225046180 + MIR SINE MIR 145 208 -54 869 250 10 10 chr1 17618880 17619088 -225045265 - MIR SINE MIR -10 252 45 28 48 0 0 chr1 17619337 17619379 -225044974 + AT_rich Low_complexity Low_complexity 1 42 0 2332 96 0 6 chr1 17619384 17619698 -225044655 + AluSq SINE Alu 1 312 -1 1791 166 3 0 chr1 17619714 17620003 -225044350 - AluJo SINE Alu -22 290 1 953 110 0 7 chr1 17620003 17620139 -225044214 - AluJb SINE Alu -177 135 1 217 254 0 84 chr1 17620223 17620294 -225044059 + L2 LINE L2 3200 3264 -8 1515 229 14 40 chr1 17620311 17620661 -225043692 + MER58B DNA MER1_type 1 341 0 263 283 11 33 chr1 17620848 17620940 -225043413 - MIR3 SINE MIR -41 167 78 449 259 38 8 chr1 17623109 17623240 -225041113 - MIR SINE MIR -68 194 60 322 267 224 6 chr1 17623432 17623602 -225040751 - MIR3 SINE MIR -12 250 45 208 305 37 0 chr1 17624054 17624136 -225040217 - L2 LINE L2 -263 3009 2925 399 295 15 95 chr1 17624580 17624627 -225039726 - MER91B DNA MER1_type -6 184 135 2066 111 3 3 chr1 17624627 17624925 -225039428 - AluY SINE Alu -13 298 1 399 295 15 95 chr1 17624925 17624953 -225039400 - MER91B DNA MER1_type -55 135 106 2151 102 10 0 chr1 17624953 17625248 -225039105 + AluSg SINE Alu 12 309 -1 399 295 15 95 chr1 17625248 17625371 -225038982 - MER91B DNA MER1_type -84 106 1 532 315 123 14 chr1 17625433 17625652 -225038701 - MIR SINE MIR -3 259 17 187 167 0 0 chr1 17625817 17625847 -225038506 - MER5A DNA MER1_type -105 84 55 217 233 12 4 chr1 17626295 17626361 -225037992 + MIR SINE MIR 77 145 -63 2112 109 7 3 chr1 17626471 17626764 -225037589 + AluSq SINE Alu 1 294 -19 2073 123 3 0 chr1 17626766 17627058 -225037295 + AluSq SINE Alu 1 293 -20 2225 109 3 0 chr1 17627060 17627364 -225036989 + AluSp SINE Alu 1 305 -8 549 256 62 12 chr1 17627375 17627535 -225036818 - MIR SINE MIR -17 245 78 487 297 52 24 chr1 17627917 17628129 -225036224 - MIR SINE MIR -35 227 10 268 304 25 0 chr1 17628890 17628969 -225035384 + MIR SINE MIR 41 121 -87 2003 129 33 0 chr1 17629000 17629302 -225035051 + AluSx SINE Alu 1 312 0 2067 88 29 0 chr1 17629610 17629934 -225034419 - AluSx SINE Alu 0 332 1 440 246 66 0 chr1 17629936 17630058 -225034295 - MIR SINE MIR -117 145 16 275 253 0 24 chr1 17630566 17630649 -225033704 + (CAGAGA)n Simple_repeat Simple_repeat 3 83 0 335 227 94 0 chr1 17631820 17631882 -225032471 + MIR SINE MIR 104 159 -103 2187 108 0 0 chr1 17631882 17632178 -225032175 - AluSx SINE Alu -16 296 1 335 227 94 0 chr1 17632178 17632228 -225032125 + MIR SINE MIR 159 231 -31 837 263 81 0 chr1 17632315 17632551 -225031802 + MIR SINE MIR 8 262 0 204 250 0 0 chr1 17632572 17632620 -225031733 + (TTA)n Simple_repeat Simple_repeat 3 50 0 289 303 64 18 chr1 17632621 17632730 -225031623 + MIR SINE MIR 58 171 -91 196 235 113 43 chr1 17633060 17633175 -225031178 + L2 LINE L2 2942 3064 -208 2326 80 0 3 chr1 17633569 17633871 -225030482 - AluY SINE Alu -8 303 3 2145 95 7 0 chr1 17633874 17634168 -225030185 - AluSx SINE Alu -16 296 1 1013 105 0 0 chr1 17634172 17634305 -225030048 - AluSq/x SINE Alu -179 133 1 273 362 0 0 chr1 17634521 17634615 -225029738 + MIR SINE MIR 165 258 -4 1768 160 45 0 chr1 17634832 17635120 -225029233 + AluJb SINE Alu 2 302 -10 868 152 0 0 chr1 17635127 17635252 -225029101 + FLAM_C SINE Alu 1 125 -8 320 202 293 0 chr1 17635275 17635374 -225028979 + MER3 DNA MER1_type 2 129 -80 2354 75 0 13 chr1 17635374 17635681 -225028672 - AluY SINE Alu -7 304 2 1503 126 0 0 chr1 17635682 17635897 -225028456 - AluSg/x SINE Alu -8 304 90 29 0 0 0 chr1 17635938 17635967 -225028386 + AT_rich Low_complexity Low_complexity 1 29 0 823 156 0 7 chr1 17635968 17636103 -225028250 + AluJo SINE Alu 1 134 -178 2369 110 0 0 chr1 17836157 17836466 -224827887 + AluSx SINE Alu 1 309 -3 1818 70 0 0 chr1 17837101 17837315 -224827038 + AluSq SINE Alu 92 305 -8 1057 79 0 0 chr1 17837315 17837442 -224826911 + AluSq SINE Alu 134 260 -53 2692 44 0 63 chr1 17837477 17837842 -224826511 + LTR14A LTR ERVK 3 344 0 1773 129 20 17 chr1 17837848 17838142 -224826211 + MSTA LTR MaLR 134 428 0 775 202 14 62 chr1 17838143 17838351 -224826002 + L1M4 LINE L1 4724 4921 -1225 525 222 32 48 chr1 17838380 17838506 -224825847 - L2 LINE L2 -2 3311 3188 2028 102 0 0 chr1 17838996 17839252 -224825101 - AluSx SINE Alu -1 311 56 397 281 97 77 chr1 17839412 17839608 -224824745 + MIR SINE MIR 4 203 -59 229 201 253 71 chr1 17839683 17839837 -224824516 + MIR SINE MIR 80 261 -1 250 259 0 0 chr1 17839880 17839938 -224824415 + L2 LINE L2 3251 3308 -5 537 289 26 30 chr1 17841129 17841330 -224823023 - MIR SINE MIR -32 230 31 406 240 164 41 chr1 17841334 17841480 -224822873 - MER5B DNA MER1_type 0 178 15 1944 108 4 22 chr1 17841486 17841590 -224822763 + AluSx SINE Alu 32 136 -176 2375 86 0 3 chr1 17841590 17841881 -224822472 + AluSc SINE Alu 1 290 -19 1944 108 4 22 chr1 17841881 17842053 -224822300 + AluSx SINE Alu 136 303 -9 2475 92 0 0 chr1 17842372 17842676 -224821677 + AluY SINE Alu 1 304 -7 470 252 33 133 chr1 17842844 17843021 -224821332 - L1ME3A LINE L1 -208 5962 5838 1995 157 7 0 chr1 17843021 17843320 -224821033 - AluJb SINE Alu -11 301 1 470 252 33 133 chr1 17843320 17843503 -224820850 - L1ME3A LINE L1 -332 5838 5638 975 236 30 93 chr1 17843583 17843981 -224820372 - MLT1J1 LTR MaLR -11 435 63 838 275 28 14 chr1 17844643 17844861 -224819492 + MIR SINE MIR 8 228 -34 2200 114 0 3 chr1 17845062 17845361 -224818992 + AluSc SINE Alu 3 300 -9 1598 109 5 0 chr1 17846194 17846404 -224817949 + AluSq SINE Alu 1 211 -102 198 0 0 0 chr1 17846417 17846439 -224817914 + (TAA)n Simple_repeat Simple_repeat 2 23 0 280 136 0 0 chr1 17846680 17846724 -224817629 - U2 snRNA snRNA -141 47 4 324 211 312 0 chr1 17846762 17846871 -224817482 + MIR SINE MIR 114 256 -6 318 343 10 0 chr1 17846967 17847066 -224817287 - L2 LINE L2 -31 3282 3183 770 244 79 54 chr1 17847179 17847498 -224816855 + L1ME3A LINE L1 3670 3980 -2166 2169 137 0 0 chr1 17847498 17847791 -224816562 + AluSx SINE Alu 1 293 -19 1012 155 16 42 chr1 17847799 17847992 -224816361 + MER5A DNA MER1_type 2 189 0 770 244 79 54 chr1 17847992 17848248 -224816105 + L1ME3A LINE L1 3986 4234 -1912 1706 183 3 36 chr1 17848248 17848554 -224815799 - AluJo SINE Alu -16 296 1 770 244 79 54 chr1 17848554 17848826 -224815527 + L1ME3A LINE L1 4234 4607 -1539 267 31 0 0 chr1 17849003 17849035 -224815318 + (GGGAA)n Simple_repeat Simple_repeat 1 32 0 551 269 50 0 chr1 17849037 17849219 -224815134 + L1ME3A LINE L1 4627 4817 -1329 313 262 0 79 chr1 17849229 17849393 -224814960 - L1M4 LINE L1 -847 5299 5149 31 26 0 0 chr1 17849393 17849431 -224814922 + AT_rich Low_complexity Low_complexity 1 38 0 1092 264 81 20 chr1 17849526 17849959 -224814394 + L1ME3A LINE L1 5352 5815 -355 386 159 0 0 chr1 17849980 17850043 -224814310 - LTR3b LTR ERVK 0 500 438 1780 198 42 53 chr1 17850043 17850477 -224813876 - LTR3 LTR ERVK 0 429 1 501 164 45 0 chr1 17850477 17850587 -224813766 + L1ME3A LINE L1 5837 5951 -219 1521 166 21 32 chr1 17850611 17850895 -224813458 + AluJo SINE Alu 26 306 -6 2507 51 0 7 chr1 17850991 17851286 -224813067 + AluY SINE Alu 11 303 -8 1576 214 84 3 chr1 17852000 17852392 -224811961 + LTR16C LTR ERVL 66 489 -2 236 338 35 50 chr1 17852408 17852580 -224811773 + MIR SINE MIR 23 191 -63 1798 174 22 42 chr1 17852620 17853021 -224811332 + MLT2D LTR ERVL 2 477 -43 492 48 0 0 chr1 17853021 17853084 -224811269 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1798 174 22 42 chr1 17853084 17853109 -224811244 + MLT2D LTR ERVL 477 501 -19 218 250 29 59 chr1 17853109 17853177 -224811176 + L2 LINE L2 3203 3268 -4 546 278 73 21 chr1 17853230 17853409 -224810944 + MIR SINE MIR 2 193 -69 2373 88 3 0 chr1 17853409 17853704 -224810649 + AluSx SINE Alu 1 296 -16 546 278 73 21 chr1 17853704 17853715 -224810638 + MIR SINE MIR 193 202 -60 255 31 0 0 chr1 17854848 17854880 -224809473 + (TG)n Simple_repeat Simple_repeat 2 33 0 2111 242 164 42 chr1 17854927 17856017 -224808336 + L2 LINE L2 2074 3312 -1 625 279 23 6 chr1 17856102 17856274 -224808079 + MIR3 SINE MIR 15 189 -19 347 361 24 6 chr1 17856422 17856588 -224807765 + MIR SINE MIR 15 183 -79 413 219 42 85 chr1 17856944 17857144 -224807209 + MIR SINE MIR 21 210 -51 589 218 148 0 chr1 17857177 17857319 -224807034 + MIR SINE MIR 30 192 -70 233 301 96 0 chr1 17857319 17857402 -224806951 + MIR SINE MIR 143 233 -29 320 293 20 20 chr1 17858280 17858379 -224805974 - MIR SINE MIR -77 131 33 475 277 144 5 chr1 17858476 17858671 -224805682 + MIR SINE MIR 41 262 0 225 228 70 18 chr1 17858668 17858725 -224805628 - L2 LINE L2 0 3272 3213 * 2929 134 24 24 chr1 17858777 17859270 -224805083 + LTR15 LTR ERV1 1 493 0 779 233 17 22 chr1 17859834 17860014 -224804339 - MIR SINE MIR -56 206 28 674 140 0 0 chr1 17860229 17860329 -224804024 + AluSg/x SINE Alu 199 298 -11 2052 132 0 33 chr1 17860364 17860506 -224803847 + AluSx SINE Alu 1 146 -166 2323 89 0 3 chr1 17860506 17860799 -224803554 + AluSc SINE Alu 5 296 -13 2052 132 0 33 chr1 17860799 17860960 -224803393 + AluSx SINE Alu 146 294 -18 2450 66 0 10 chr1 17861205 17861510 -224802843 - AluY SINE Alu -9 302 1 417 297 39 0 chr1 17861549 17861677 -224802676 + MIR SINE MIR 87 219 -43 575 205 48 24 chr1 17861692 17861858 -224802495 - MER4C LTR ERV1 0 465 296 2513 86 0 0 chr1 17861863 17862166 -224802187 + AluSq SINE Alu 1 303 -10 1884 97 13 203 chr1 17862203 17862596 -224801757 - MER4A LTR ERV1 -238 426 -40 2314 102 0 3 chr1 17862596 17862901 -224801452 + AluSc SINE Alu 1 304 -5 2355 107 7 3 chr1 17862904 17863212 -224801141 + AluSx SINE Alu 1 309 -3 1884 97 13 203 chr1 17863212 17863340 -224801013 - MER4A LTR ERV1 -512 152 1 199 216 206 41 chr1 17863634 17863731 -224800622 + MIR SINE MIR 22 134 -128 420 283 62 23 chr1 17864198 17864375 -224799978 - MIR SINE MIR -12 250 67 283 200 29 0 chr1 17864913 17864983 -224799370 + (TGAG)n Simple_repeat Simple_repeat 3 74 0 252 211 0 0 chr1 17864994 17865046 -224799307 + L2 LINE L2 3220 3271 -1 2196 132 0 0 chr1 17865797 17866092 -224798261 + AluSx SINE Alu 1 295 -17 2434 53 0 3 chr1 17866093 17866437 -224797916 + AluY SINE Alu 1 343 0 274 210 91 119 chr1 17866561 17866704 -224797649 + MIR SINE MIR 117 255 -7 328 280 13 0 chr1 17866713 17866788 -224797565 + MIR SINE MIR 109 184 -78 822 167 0 0 chr1 17866791 17866911 -224797442 - FLAM_C SINE Alu -23 120 1 2245 78 0 11 chr1 17866973 17867254 -224797099 - AluSg SINE Alu -32 278 1 1142 150 5 60 chr1 17867360 17867425 -224796928 - MER5A DNA MER1_type 0 189 122 1764 157 48 10 chr1 17867425 17867719 -224796634 + AluJo SINE Alu 2 306 -6 1142 150 5 60 chr1 17867719 17867853 -224796500 - MER5A DNA MER1_type -67 122 1 348 260 122 0 chr1 17867958 17868081 -224796272 + MIR SINE MIR 60 197 -65 2565 62 0 10 chr1 17868367 17868673 -224795680 - AluY SINE Alu -8 303 1 704 142 117 0 chr1 17868673 17868793 -224795560 - FLAM_C SINE Alu -8 135 2 1309 178 17 26 chr1 17868974 17869205 -224795148 + AluJb SINE Alu 6 234 -78 2725 131 59 27 chr1 17869244 17869261 -224795092 - MLT1D LTR MaLR 0 505 490 2310 159 15 15 chr1 17869261 17869664 -224794689 - MER57A LTR ERV1 0 403 1 2725 131 59 27 chr1 17869664 17869965 -224794388 - MLT1D LTR MaLR -15 490 163 4711 105 9 0 chr1 17869965 17870594 -224793759 - MER41B LTR ERV1 0 635 1 2725 131 59 27 chr1 17870594 17870763 -224793590 - MLT1D LTR MaLR -342 163 1 651 227 67 0 chr1 17871077 17871227 -224793126 + MIR SINE MIR 77 236 -26 454 229 169 30 chr1 17871422 17871588 -224792765 - MER4C LTR ERV1 0 465 277 1799 92 14 134 chr1 17871604 17871891 -224792462 - MER4A LTR ERV1 -239 425 261 2260 106 0 20 chr1 17871891 17872193 -224792160 + AluSx SINE Alu 1 296 -16 1799 92 14 134 chr1 17872193 17872427 -224791926 - MER4A LTR ERV1 -403 261 1 275 191 16 0 chr1 17872471 17872534 -224791819 + CT-rich Low_complexity Low_complexity 4 67 0 2108 223 79 39 chr1 17872566 17873136 -224791217 - MLT1E LTR MaLR 0 593 1 1672 206 20 0 chr1 17873238 17873544 -224790809 + AluJb SINE Alu 1 312 0 462 286 92 24 chr1 17873633 17874161 -224790192 - L1ME LINE L1 -372 5867 5222 823 138 8 39 chr1 17874187 17874317 -224790036 - FLAM_C SINE Alu -17 126 1 727 271 78 98 chr1 17874393 17875400 -224788953 - L1ME LINE L1 -1078 5137 4151 2048 142 17 0 chr1 17875400 17875689 -224788664 - AluSx SINE Alu -18 294 1 727 271 78 98 chr1 17875689 17875776 -224788577 - L1ME LINE L1 -2064 4151 4064 1276 246 102 68 chr1 17875837 17876590 -224787763 - L1MEc LINE L1 -2882 3333 2608 1726 161 30 33 chr1 17876590 17876889 -224787464 - AluJb SINE Alu -14 298 1 1276 246 102 68 chr1 17876889 17877214 -224787139 - L1MEc LINE L1 -3607 2608 2242 2016 131 0 20 chr1 17877214 17877511 -224786842 - AluSx SINE Alu -1 311 21 1276 246 102 68 chr1 17877511 17877608 -224786745 - L1MEc LINE L1 -3973 2242 2150 1751 173 0 32 chr1 17877697 17878009 -224786344 - AluJo SINE Alu -10 302 1 2050 154 0 3 chr1 17878049 17878348 -224786005 + AluJo SINE Alu 1 298 -14 206 220 9 37 chr1 17878660 17878769 -224785584 + (TTATA)n Simple_repeat Simple_repeat 3 108 0 287 294 0 0 chr1 17878835 17878903 -224785450 - Tigger2a DNA MER2_type 0 434 367 973 66 16 0 chr1 17878903 17879025 -224785328 + AluY SINE Alu 174 297 -14 2302 92 59 3 chr1 17879029 17879387 -224784966 - Tigger2a DNA MER2_type -55 379 2 283 333 26 20 chr1 17879387 17879582 -224784771 - HAL1 LINE L1 -937 1570 1375 387 235 91 15 chr1 17879606 17879738 -224784615 - L1MEc LINE L1 -5975 230 89 2102 198 59 71 chr1 17880013 17880574 -224783779 - MLT2B3 LTR ERVL 0 554 1 481 288 42 63 chr1 17881043 17881234 -224783119 - L2 LINE L2 -5 3308 3122 2472 79 3 0 chr1 17881321 17881624 -224782729 + AluSq SINE Alu 1 304 -9 1114 211 149 53 chr1 17881636 17881935 -224782418 - MLT1D LTR MaLR -48 457 105 2357 90 0 13 chr1 17881935 17882235 -224782118 - AluSx SINE Alu -16 296 1 1114 211 149 53 chr1 17882235 17882352 -224782001 - MLT1D LTR MaLR -400 105 1 376 345 18 23 chr1 17882751 17882922 -224781431 - L2 LINE L2 -556 2758 2589 312 283 105 56 chr1 17883293 17883597 -224780756 + L2 LINE L2 2952 3270 -2 2292 105 0 0 chr1 17883993 17884288 -224780065 - AluSx SINE Alu -17 295 1 328 217 25 25 chr1 17884364 17884484 -224779869 + MER113 DNA MER1_type? 2 121 -400 206 176 29 59 chr1 17884520 17884545 -224779808 + (TA)n Simple_repeat Simple_repeat 1 25 -41 1924 146 28 3 chr1 17884545 17884833 -224779520 + AluJo SINE Alu 1 295 -17 206 176 29 59 chr1 17884833 17884875 -224779478 + (TA)n Simple_repeat Simple_repeat 25 66 0 838 160 111 28 chr1 17884941 17885122 -224779231 - MIR SINE MIR -21 241 46 349 43 0 0 chr1 17886811 17886857 -224777496 + (TTTA)n Simple_repeat Simple_repeat 3 168 0 2083 102 29 0 chr1 17886857 17887131 -224777222 - AluSx SINE Alu -30 282 1 2343 102 3 0 chr1 17887321 17887625 -224776728 + AluSc SINE Alu 1 305 -4 323 259 35 63 chr1 17887966 17888109 -224776244 - MIR3 SINE MIR -67 141 3 456 301 169 0 chr1 17888206 17888372 -224775981 - MIR SINE MIR -27 235 42 482 293 39 33 chr1 17888642 17888823 -224775530 - MIR SINE MIR 0 262 81 197 322 0 0 chr1 17888990 17889049 -224775304 - L2 LINE L2 0 3272 3214 285 266 124 18 chr1 17889571 17889684 -224774669 - L2 LINE L2 -14 3299 3175 285 98 0 0 chr1 17889724 17889765 -224774588 + (CA)n Simple_repeat Simple_repeat 1 41 0 1090 268 50 17 chr1 17889888 17890415 -224773938 - L2 LINE L2 -36 3277 2736 1932 142 30 0 chr1 17890476 17890779 -224773574 - AluSx SINE Alu 0 312 1 2157 103 0 7 chr1 17890783 17891084 -224773269 - AluSc SINE Alu -10 299 1 209 309 117 0 chr1 17891272 17891366 -224772987 + L2 LINE L2 3168 3272 0 214 328 74 74 chr1 17892301 17892378 -224771975 + MER5A DNA MER1_type 1 77 -112 2134 105 3 3 chr1 17892378 17892673 -224771680 + AluSx SINE Alu 1 295 -17 1623 99 0 5 chr1 17892672 17892895 -224771458 + AluSg/x SINE Alu 84 305 -7 * 214 328 74 74 chr1 17892673 17892899 -224771454 + MER5A DNA MER1_type 77 85 -104 278 25 0 25 chr1 17892899 17892939 -224771414 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 214 328 74 74 chr1 17892939 17893045 -224771308 + MER5A DNA MER1_type 84 189 0 191 294 90 40 chr1 17893129 17893231 -224771122 + MIR SINE MIR 23 118 -144 2405 101 32 9 chr1 17893231 17893578 -224770775 + THE1A LTR MaLR 1 355 0 12642 77 5 2 chr1 17893578 17895154 -224769199 + THE1A-int LTR MaLR 1 1580 0 2458 81 32 9 chr1 17895154 17895501 -224768852 + THE1A LTR MaLR 1 355 0 191 294 90 40 chr1 17895501 17895578 -224768775 + MIR SINE MIR 117 210 -52 2078 103 34 0 chr1 17896630 17896922 -224767431 - AluSp SINE Alu -11 302 1 369 221 13 0 chr1 17896944 17897021 -224767332 + MER116 DNA Mariner 3 80 0 396 301 52 0 chr1 17898289 17898442 -224765911 - MIR SINE MIR 0 262 102 2165 119 7 0 chr1 17899108 17899418 -224764935 + AluSx SINE Alu 1 312 0 659 296 33 0 chr1 17899485 17899725 -224764628 + L2 LINE L2 2807 3054 -259 784 272 64 11 chr1 17899943 17900226 -224764127 + MER113 DNA MER1_type? 138 435 -86 1094 244 15 112 chr1 17900395 17900591 -224763762 - L2 LINE L2 -3 3310 3097 1782 170 3 35 chr1 17900591 17900908 -224763445 + AluJo SINE Alu 2 308 -4 1094 244 15 112 chr1 17900908 17900994 -224763359 - L2 LINE L2 -216 3097 3004 1673 156 3 61 chr1 17900994 17901320 -224763033 + AluJb SINE Alu 1 307 -5 1094 244 15 112 chr1 17901320 17901574 -224762779 - L2 LINE L2 -309 3004 2825 390 262 14 34 chr1 17901621 17901925 -224762428 + G-rich Low_complexity Low_complexity 1 297 0 586 287 244 32 chr1 17901941 17902840 -224761513 - L2 LINE L2 -419 2895 1807 1225 150 21 47 chr1 17902867 17903101 -224761252 + AluJo SINE Alu 1 228 -84 910 176 104 24 chr1 17903283 17903643 -224760710 + MLT1D LTR MaLR 2 446 -59 1784 127 23 33 chr1 17903643 17903942 -224760411 + AluSx SINE Alu 1 296 -16 225 309 29 0 chr1 17904511 17904579 -224759774 + MIR SINE MIR 8 77 -185 742 257 228 5 chr1 17904581 17904954 -224759399 - L2 LINE L2 -2 3311 2856 2080 95 46 0 chr1 17904955 17905240 -224759113 + AluSx SINE Alu 1 298 -14 279 248 133 29 chr1 17905275 17905380 -224758973 - MIR SINE MIR -122 140 25 541 278 122 50 chr1 17906219 17906597 -224757756 - L2 LINE L2 -2 3270 2866 2080 116 0 3 chr1 17906859 17907152 -224757201 - AluSg SINE Alu -18 292 1 2277 95 0 0 chr1 17907336 17907641 -224756712 + AluSg SINE Alu 1 305 -5 2243 104 0 0 chr1 17907651 17907948 -224756405 + AluSx SINE Alu 1 297 -15 26 23 0 23 chr1 17907954 17907971 -224756382 + AT_rich Low_complexity Low_complexity 1 17 -26 2485 39 7 3 chr1 17907971 17908281 -224756072 + AluY SINE Alu 1 311 0 26 23 0 23 chr1 17908281 17908307 -224756046 + AT_rich Low_complexity Low_complexity 17 43 0 257 284 87 24 chr1 17908317 17908444 -224755909 - MIR SINE MIR -9 253 119 203 250 13 26 chr1 17908886 17908962 -224755391 + C-rich Low_complexity Low_complexity 3 77 0 4218 145 49 20 chr1 17909216 17909693 -224754660 - LTR62 LTR ERVK -2 717 212 1973 148 0 3 chr1 17909693 17909996 -224754357 + AluSx SINE Alu 1 302 -10 4218 145 49 20 chr1 17909996 17910215 -224754138 - LTR62 LTR ERVK -507 212 1 182 255 0 0 chr1 17910466 17910517 -224753836 - L2 LINE L2 -234 3079 3029 493 284 142 5 chr1 17911250 17911440 -224752913 - MIR SINE MIR -19 243 28 297 267 0 27 chr1 17911544 17911619 -224752734 - L2 LINE L2 0 3313 3241 221 322 53 33 chr1 17911609 17911761 -224752592 - L2 LINE L2 -181 3091 2937 * 1542 194 23 37 chr1 17911762 17911781 -224752572 + L1PB4 LINE L1 5811 5829 -327 1702 122 93 0 chr1 17911781 17912060 -224752293 + AluJb SINE Alu 1 305 -7 1542 194 23 37 chr1 17912060 17912391 -224751962 + L1PB4 LINE L1 5829 6156 0 322 309 36 9 chr1 17912392 17912502 -224751851 + MIR SINE MIR 34 146 -62 2073 108 34 0 chr1 17912505 17912801 -224751552 - AluSx SINE Alu -5 307 2 1945 116 0 40 chr1 17912803 17913106 -224751247 - AluJb SINE Alu -19 293 3 536 197 41 0 chr1 17914253 17914375 -224749978 + L1MB2 LINE L1 4718 4844 -1302 * 2458 103 210 138 chr1 17914365 17914686 -224749667 + L1MB2 LINE L1 5334 5631 -540 480 221 0 0 chr1 17914686 17914772 -224749581 - FLAM SINE Alu -12 131 46 2458 103 210 138 chr1 17914772 17914810 -224749543 + L1MB2 LINE L1 5631 5665 -506 1443 200 41 10 chr1 17914810 17914931 -224749422 + AluJo SINE Alu 1 117 -195 209 56 0 28 chr1 17914931 17914967 -224749386 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1443 200 41 10 chr1 17914967 17915135 -224749218 + AluJo SINE Alu 117 299 -13 2458 103 210 138 chr1 17915135 17915271 -224749082 + L1MB2 LINE L1 5665 5790 -381 1975 137 0 7 chr1 17915271 17915570 -224748783 + AluSx SINE Alu 1 297 -15 2458 103 210 138 chr1 17915570 17915731 -224748622 + L1MB2 LINE L1 5790 6130 -41 2204 100 3 0 chr1 17915731 17916030 -224748323 + AluSx SINE Alu 1 300 -12 1406 222 124 46 chr1 17916563 17917022 -224747331 - MLT1D LTR MaLR -6 499 5 716 293 111 22 chr1 17917186 17917599 -224746754 - LTR16A LTR ERVL 0 450 1 1663 174 72 20 chr1 17917741 17917922 -224746431 - LTR38B LTR ERV1 0 611 441 2438 87 0 0 chr1 17917922 17918234 -224746119 + AluSx SINE Alu 1 312 0 1663 174 72 20 chr1 17918234 17918441 -224745912 - LTR38B LTR ERV1 -170 441 208 180 0 0 0 chr1 17918448 17918468 -224745885 + (CAT)n Simple_repeat Simple_repeat 2 21 0 871 134 0 0 chr1 17918468 17918587 -224745766 - FLAM_C SINE Alu -190 122 1 1291 101 19 0 chr1 17918587 17918796 -224745557 - LTR38B LTR ERV1 -397 213 1 2096 121 10 0 chr1 17918850 17919157 -224745196 - AluSx SINE Alu -2 310 1 307 241 24 24 chr1 17919199 17919282 -224745071 - L2 LINE L2 -2 3270 3188 377 294 27 54 chr1 17919858 17920042 -224744311 + L1MC4a LINE L1 5770 5948 -1860 902 133 75 6 chr1 17920181 17920354 -224743999 + LTR38B LTR ERV1 1 185 -425 1272 160 14 14 chr1 17920550 17920769 -224743584 + AluJo SINE Alu 85 303 -9 232 283 225 17 chr1 17920978 17921098 -224743255 + MER5A DNA MER1_type 43 187 -2 1714 151 40 0 chr1 17921108 17921386 -224742967 + AluJb SINE Alu 4 292 -20 186 43 0 0 chr1 17922075 17922098 -224742255 + (CAGG)n Simple_repeat Simple_repeat 3 25 0 184 255 82 102 chr1 17922222 17922320 -224742033 + MIR SINE MIR 51 146 -116 270 321 134 0 chr1 17923026 17923160 -224741193 - MIR SINE MIR -54 208 57 2024 127 23 3 chr1 17923170 17923477 -224740876 - AluSq SINE Alu 0 313 1 288 276 48 29 chr1 17923477 17923577 -224740776 - MIR SINE MIR -115 147 46 495 233 50 78 chr1 17923673 17923853 -224740500 + MER5B DNA MER1_type 1 175 -3 2077 124 0 0 chr1 17924029 17924319 -224740034 + AluSq SINE Alu 1 290 -23 189 246 53 18 chr1 17924756 17924813 -224739540 + MIR SINE MIR 4 62 -200 248 286 197 37 chr1 17925323 17925648 -224738705 + L2 LINE L2 1303 1679 -1635 2086 118 10 0 chr1 17925661 17925958 -224738395 - AluSg SINE Alu -10 300 1 1538 79 0 252 chr1 17925990 17926383 -224737970 - AluY SINE Alu -17 294 1 604 213 103 45 chr1 17926539 17926722 -224737631 - FRAM SINE Alu 0 166 2 1094 112 10 76 chr1 17926765 17926962 -224737391 - AluJb SINE Alu -117 195 12 746 316 186 29 chr1 17927159 17928043 -224736310 + L2 LINE L2 2254 3283 -30 2034 144 0 0 chr1 17928284 17928590 -224735763 - AluSx SINE Alu -6 306 1 1558 167 7 59 chr1 17928633 17928797 -224735556 - AluSx SINE Alu -22 290 148 2479 26 7 7 chr1 17928797 17929099 -224735254 - AluY SINE Alu -9 302 1 1558 167 7 59 chr1 17929099 17929240 -224735113 - AluSx SINE Alu -164 148 1 1081 143 0 53 chr1 17929873 17930062 -224734291 - AluSg/x SINE Alu 0 312 134 1934 93 0 15 chr1 17930062 17930331 -224734022 - AluY SINE Alu -21 290 26 292 248 58 51 chr1 17931069 17931206 -224733147 + MIR SINE MIR 74 211 -51 204 354 49 0 chr1 17931944 17932026 -224732327 + MIR SINE MIR 62 147 -61 1541 180 26 26 chr1 17932457 17932768 -224731585 - AluJo SINE Alu -1 311 1 1774 95 40 8 chr1 17933251 17933503 -224730850 + AluSq SINE Alu 1 260 -53 24 0 0 0 chr1 17933511 17933535 -224730818 + AT_rich Low_complexity Low_complexity 1 24 0 1765 146 27 14 chr1 17933553 17933847 -224730506 + AluSx SINE Alu 1 298 -14 356 173 27 40 chr1 17933850 17933925 -224730428 + MER5A DNA MER1_type 114 187 -2 778 184 0 0 chr1 17933998 17934123 -224730230 + FLAM_C SINE Alu 2 126 -17 1539 149 15 11 chr1 17934143 17934405 -224729948 + AluSq SINE Alu 1 263 -50 183 264 91 64 chr1 17934409 17934519 -224729834 - L2 LINE L2 -1324 1990 1878 511 92 0 0 chr1 17934764 17934829 -224729524 + AluJ/FLAM SINE Alu 2 66 -246 478 340 213 11 chr1 17934883 17935584 -224728769 - L2 LINE L2 -2054 1260 419 244 314 85 8 chr1 17935872 17935990 -224728363 + MIR SINE MIR 132 258 -4 1789 174 0 3 chr1 17936847 17937141 -224727212 + AluSx SINE Alu 1 293 -19 1949 104 10 21 chr1 17937152 17937441 -224726912 + AluY SINE Alu 1 286 -25 263 301 169 33 chr1 17939681 17939708 -224724645 - L2 LINE L2 -2822 492 470 2012 112 7 7 chr1 17939708 17940002 -224724351 + AluSq SINE Alu 7 300 -13 2251 87 3 13 chr1 17940004 17940303 -224724050 + AluSx SINE Alu 2 297 -15 263 301 169 33 chr1 17940303 17940455 -224723898 - L2 LINE L2 -2844 470 285 2150 126 0 0 chr1 17940904 17941205 -224723148 - AluSx SINE Alu -11 301 1 808 161 20 20 chr1 17941342 17941491 -224722862 + AluSg/x SINE Alu 125 273 -39 1814 125 42 7 chr1 17942558 17942846 -224721507 + AluSx SINE Alu 1 298 -14 281 364 152 8 chr1 17942940 17943204 -224721149 - L2 LINE L2 -539 2775 2474 1269 129 129 17 chr1 17943220 17943461 -224720892 - AluJb SINE Alu -44 268 1 216 253 53 0 chr1 17943507 17943582 -224720771 - L2 LINE L2 -223 3049 2971 2131 121 16 0 chr1 17944883 17945189 -224719164 - AluSx SINE Alu -1 311 1 2152 122 0 0 chr1 17945790 17946085 -224718268 + AluSx SINE Alu 1 295 -17 381 252 99 9 chr1 17946141 17946252 -224718101 + MER5A DNA MER1_type 9 129 -60 203 286 52 0 chr1 17946346 17946423 -224717930 - MIR SINE MIR -115 147 67 224 378 0 0 chr1 17947730 17947804 -224716549 - MIR SINE MIR -57 151 78 232 350 103 10 chr1 17948127 17948224 -224716129 + MIR SINE MIR 77 182 -80 210 91 0 0 chr1 17948337 17948370 -224715983 + (CCCA)n Simple_repeat Simple_repeat 1 33 0 181 183 127 56 chr1 17948913 17948984 -224715369 + L2 LINE L2 3173 3248 -24 2015 113 14 0 chr1 17949003 17949285 -224715068 + AluSp SINE Alu 1 286 -27 1415 186 42 33 chr1 17949299 17949441 -224714912 + AluJb SINE Alu 1 140 -172 1759 150 23 10 chr1 17949441 17949747 -224714606 + AluSx SINE Alu 1 310 -2 1415 186 42 33 chr1 17949747 17949910 -224714443 + AluJb SINE Alu 140 309 -3 1820 123 26 0 chr1 17949918 17950187 -224714166 + AluSp SINE Alu 1 276 -37 263 271 249 6 chr1 17952848 17953025 -224711328 + Charlie8 DNA MER1_type 57 276 -2141 377 261 72 0 chr1 17953149 17953260 -224711093 + MIR SINE MIR 111 229 -33 1881 125 26 30 chr1 17953338 17953641 -224710712 + AluSx SINE Alu 1 302 -10 1794 126 53 21 chr1 17954260 17954545 -224709808 + AluSx SINE Alu 1 294 -18 2144 85 21 0 chr1 17954948 17955229 -224709124 + AluSx SINE Alu 1 287 -25 1997 101 18 11 chr1 17955234 17955520 -224708833 + AluSg SINE Alu 1 288 -22 26 0 0 0 chr1 17956490 17956516 -224707837 + AT_rich Low_complexity Low_complexity 1 26 0 2140 98 10 23 chr1 17960981 17961287 -224703066 + AluSx SINE Alu 1 302 -10 751 202 0 0 chr1 17962990 17963119 -224701234 + FLAM_A SINE Alu 1 129 -4 868 123 31 0 chr1 17963537 17963667 -224700686 + AluSq/x SINE Alu 1 134 -179 2064 131 3 10 chr1 17963934 17964248 -224700105 + AluSx SINE Alu 1 312 0 1510 177 58 17 chr1 17964312 17964606 -224699747 - AluJb SINE Alu -6 306 1 2117 120 3 0 chr1 17965117 17965426 -224698927 + AluSg SINE Alu 1 310 0 2251 79 10 3 chr1 17965473 17965765 -224698588 + AluSp SINE Alu 1 294 -19 366 267 109 15 chr1 17966510 17966712 -224697641 - MER112 DNA MER1_type -39 221 1 1839 132 3 50 chr1 17967072 17967391 -224696962 + AluSx SINE Alu 1 304 -8 916 157 99 0 chr1 17967618 17967809 -224696544 - MER2 DNA MER2_type -135 210 1 597 84 0 0 chr1 17967895 17967978 -224696375 - Alu SINE Alu -6 303 221 2414 58 0 0 chr1 17968063 17968358 -224695995 + AluSc SINE Alu 1 295 -14 2012 119 0 14 chr1 17968759 17969044 -224695309 + AluSx SINE Alu 1 281 -31 191 319 14 29 chr1 17969294 17969363 -224694990 + MIR SINE MIR 195 262 0 2155 66 28 21 chr1 17970911 17971198 -224693155 + AluSc SINE Alu 3 291 -18 2333 87 3 3 chr1 17971430 17971741 -224692612 + AluSp SINE Alu 1 311 -2 2119 112 20 0 chr1 17976441 17976746 -224687607 - AluSx SINE Alu 0 312 2 299 223 117 11 chr1 17978619 17978713 -224685640 + MIR SINE MIR 45 148 -60 1520 153 104 0 chr1 17979921 17980189 -224684164 + AluJo SINE Alu 1 296 -16 1888 99 0 8 chr1 17980192 17980444 -224683909 + AluSg SINE Alu 1 250 -60 1634 94 54 5 chr1 17980449 17980673 -224683680 - AluSq SINE Alu -47 266 32 2398 71 0 7 chr1 17980737 17981046 -224683307 + AluY SINE Alu 1 307 -4 198 0 0 0 chr1 17981046 17981068 -224683285 + (TA)n Simple_repeat Simple_repeat 2 23 0 797 174 8 0 chr1 17981071 17981203 -224683150 + FLAM_C SINE Alu 1 133 0 2103 90 41 7 chr1 17981502 17981792 -224682561 + AluSq SINE Alu 1 300 -13 1258 97 0 0 chr1 17982498 17982674 -224681679 + AluY SINE Alu 136 311 0 364 357 0 0 chr1 17982678 17982776 -224681577 - L1MC4 LINE L1 -1339 6703 6606 2221 201 116 9 chr1 17983835 17984514 -224679839 + MER21B LTR ERV1 40 814 -49 1888 111 30 0 chr1 17984517 17984788 -224679565 + AluSg SINE Alu 1 279 -31 2069 91 0 4 chr1 17985354 17985629 -224678724 + AluSq SINE Alu 34 307 -6 1759 146 3 24 chr1 17985918 17986213 -224678140 + AluSx SINE Alu 14 302 -10 258 292 31 0 chr1 17986789 17986854 -224677499 + MIR SINE MIR 86 152 -110 26 74 0 0 chr1 17987364 17987418 -224676935 + GC_rich Low_complexity Low_complexity 1 54 0 31 44 0 0 chr1 17987457 17987502 -224676851 + GC_rich Low_complexity Low_complexity 1 45 0 35 92 0 0 chr1 17987637 17987735 -224676618 + GC_rich Low_complexity Low_complexity 1 98 0 24 32 0 0 chr1 17987777 17987808 -224676545 + GC_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr1 17987982 17988022 -224676331 + GC_rich Low_complexity Low_complexity 1 40 0 183 156 0 0 chr1 17988045 17988077 -224676276 + (CTG)n Simple_repeat Simple_repeat 3 34 0 46 33 0 0 chr1 17989427 17989487 -224674866 + GC_rich Low_complexity Low_complexity 1 60 0 249 250 24 0 chr1 17989502 17989586 -224674767 + (CCCCG)n Simple_repeat Simple_repeat 1 86 0 450 319 99 59 chr1 17989996 17990300 -224674053 - L2 LINE L2 -1 3271 2956 1423 199 45 42 chr1 17991867 17992178 -224672175 - AluJb SINE Alu 0 312 1 2085 97 61 0 chr1 17992194 17992473 -224671880 - AluSg SINE Alu -14 296 1 1853 179 0 7 chr1 17992604 17992911 -224671442 - AluJo SINE Alu -7 305 1 320 165 0 110 chr1 17992911 17993002 -224671351 + Charlie5 DNA MER1_type 2503 2583 -29 209 240 40 0 chr1 17993364 17993414 -224670939 + MIR SINE MIR 205 256 -6 275 216 151 86 chr1 17993513 17993554 -224670799 + MER5A DNA MER1_type 35 72 -117 1972 140 0 48 chr1 17993554 17993701 -224670652 + AluJb SINE Alu 1 127 -185 2315 91 7 7 chr1 17993701 17994010 -224670343 + AluSq SINE Alu 1 309 -4 1972 140 0 48 chr1 17994010 17994176 -224670177 + AluJb SINE Alu 127 299 -13 275 216 151 86 chr1 17994176 17994222 -224670131 + MER5A DNA MER1_type 72 114 -75 2458 85 3 3 chr1 17994222 17994529 -224669824 - AluSq SINE Alu -6 307 1 275 216 151 86 chr1 17994529 17994579 -224669774 + MER5A DNA MER1_type 114 182 -7 529 57 38 4 chr1 17994584 17994794 -224669559 + AluSp SINE Alu 1 296 -17 2665 50 0 0 chr1 17994883 17995185 -224669168 + AluY SINE Alu 1 302 -9 259 122 0 0 chr1 17995247 17995288 -224669065 + THE1C LTR MaLR 1 41 -387 2347 74 0 0 chr1 17995288 17995614 -224668739 - AluY SINE Alu 0 326 1 1768 101 29 4 chr1 17995619 17995885 -224668468 - AluSx SINE Alu 0 313 42 1055 110 24 6 chr1 17995885 17996049 -224668304 + THE1C LTR MaLR 209 375 0 2181 104 10 7 chr1 17996468 17996765 -224667588 + AluSc SINE Alu 1 298 -11 2305 106 0 0 chr1 17996898 17997191 -224667162 + AluSx SINE Alu 1 293 -19 483 326 31 31 chr1 17997628 17997732 -224666621 - MIR SINE MIR -17 245 139 2197 125 23 13 chr1 17997732 17998117 -224666236 - MLT1B LTR MaLR -1 389 1 483 326 31 31 chr1 17998117 17998205 -224666148 - MIR SINE MIR -122 140 53 1624 165 86 4 chr1 17998218 17998497 -224665856 - AluJo SINE Alu 0 312 11 2128 118 7 7 chr1 17998504 17998527 -224665826 - AluSp SINE Alu -7 306 284 180 0 0 0 chr1 17998527 17998547 -224665806 + (TG)n Simple_repeat Simple_repeat 1 20 0 2128 118 7 7 chr1 17998547 17998829 -224665524 - AluSp SINE Alu -28 285 1 2367 87 0 0 chr1 17999092 17999430 -224664923 + AluSx SINE Alu 1 338 0 317 219 52 21 chr1 17999452 17999548 -224664805 + U13 snRNA snRNA 4 102 -2 2237 128 0 0 chr1 17999584 17999882 -224664471 + AluSx SINE Alu 10 307 -5 1609 164 22 77 chr1 18000177 18000321 -224664032 + AluJo SINE Alu 1 151 -161 2730 58 0 0 chr1 18000321 18000633 -224663720 + AluSx SINE Alu 1 312 0 1609 164 22 77 chr1 18000633 18000811 -224663542 + AluJo SINE Alu 151 305 -7 2230 104 0 0 chr1 18000944 18001223 -224663130 - AluSg1 SINE Alu -22 287 9 199 254 63 16 chr1 18001286 18001349 -224663004 - MIR3 SINE MIR -52 156 91 2067 134 13 3 chr1 18001816 18002114 -224662239 + AluSx SINE Alu 1 301 -11 2206 104 3 0 chr1 18002116 18002405 -224661948 + AluSg1 SINE Alu 1 290 -19 288 167 17 17 chr1 18002549 18002609 -224661744 - MIR SINE MIR -109 153 94 291 346 15 15 chr1 18002616 18002752 -224661601 + L2 LINE L2 3175 3310 -3 1072 131 5 70 chr1 18002758 18002914 -224661439 + LTR26B LTR ERV1 1 141 -390 2015 133 17 3 chr1 18002914 18003207 -224661146 - AluSx SINE Alu -15 297 1 1072 131 5 70 chr1 18003207 18003264 -224661089 + LTR26B LTR ERV1 141 200 -331 1651 154 10 47 chr1 18003273 18003412 -224660941 + AluSx SINE Alu 5 148 -164 2282 60 14 18 chr1 18003412 18003716 -224660637 + AluY SINE Alu 1 303 0 2392 101 0 0 chr1 18003716 18004023 -224660330 + AluSg SINE Alu 1 307 -3 1961 126 7 17 chr1 18004023 18004317 -224660036 + AluY SINE Alu 1 291 -20 1651 154 10 47 chr1 18004317 18004472 -224659881 + AluSx SINE Alu 145 291 -21 1866 83 38 102 chr1 18004474 18004787 -224659566 + AluSp SINE Alu 1 293 -20 2498 72 7 0 chr1 18004787 18005094 -224659259 + AluSg SINE Alu 1 309 -1 931 170 13 0 chr1 18005094 18005247 -224659106 + LTR26B LTR ERV1 377 531 0 878 150 29 118 chr1 18005433 18005571 -224658782 + MER58 DNA MER1_type 2163 2312 -108 1814 184 7 7 chr1 18005571 18005870 -224658483 + AluSx SINE Alu 2 300 -12 2579 60 0 16 chr1 18005871 18006186 -224658167 + AluY SINE Alu 2 311 0 878 150 29 118 chr1 18006186 18006325 -224658028 + MER58 DNA MER1_type 2311 2417 -3 1328 154 0 51 chr1 18006329 18006503 -224657850 - AluJo SINE Alu -5 307 146 2121 122 24 0 chr1 18006503 18006797 -224657556 - AluSx SINE Alu -11 301 1 1328 154 0 51 chr1 18006797 18006856 -224657497 - AluJo SINE Alu -166 146 86 459 171 126 0 chr1 18006856 18006944 -224657409 + L1ME3A LINE L1 6044 6150 -20 501 84 0 0 chr1 18006944 18007015 -224657338 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 459 171 126 0 chr1 18007015 18007037 -224657316 + L1ME3A LINE L1 6150 6168 -2 2098 162 0 0 chr1 18007041 18007349 -224657004 + AluSx SINE Alu 1 308 -4 2322 104 3 0 chr1 18007351 18007649 -224656704 + AluSp SINE Alu 1 299 -14 2406 75 0 0 chr1 18007662 18007944 -224656409 + AluSq SINE Alu 1 282 -31 2392 83 3 3 chr1 18007944 18008244 -224656109 - AluSq SINE Alu -12 301 1 1171 57 0 0 chr1 18008266 18008424 -224655929 - L1PA4 LINE L1 -1 6154 5997 327 238 0 36 chr1 18008761 18008845 -224655508 - MIR SINE MIR -94 168 88 21 0 0 0 chr1 18008853 18008874 -224655479 + AT_rich Low_complexity Low_complexity 1 21 0 2079 141 0 0 chr1 18009002 18009300 -224655053 + AluSx SINE Alu 1 298 -14 1148 105 0 55 chr1 18009416 18009589 -224654764 - AluSp SINE Alu -14 299 135 2303 92 7 0 chr1 18009589 18009882 -224654471 - AluSx SINE Alu -17 295 1 253 254 38 26 chr1 18009909 18010029 -224654324 - MIR SINE MIR -89 119 3 2020 93 0 8 chr1 18010663 18010922 -224653431 + AluSq SINE Alu 57 313 0 2488 90 0 0 chr1 18010932 18011243 -224653110 + AluY SINE Alu 1 311 0 288 211 0 126 chr1 18011292 18011347 -224653006 - L1ME LINE L1 -459 5662 5622 2289 100 0 13 chr1 18011347 18011657 -224652696 - AluSg SINE Alu -4 306 1 288 211 0 126 chr1 18011657 18011696 -224652657 - L1ME LINE L1 -499 5622 5580 1209 142 5 54 chr1 18011800 18012005 -224652348 + AluSx SINE Alu 3 197 -115 612 162 18 0 chr1 18012162 18012273 -224652080 - AluJb SINE Alu -199 113 1 2225 115 3 16 chr1 18012507 18012821 -224651532 - AluSx SINE Alu -2 310 1 668 225 47 85 chr1 18012832 18012905 -224651448 - L1ME2 LINE L1 0 6164 6090 2018 144 0 3 chr1 18012905 18013203 -224651150 - AluSx SINE Alu -15 297 1 668 225 47 85 chr1 18013203 18013374 -224650979 - L1ME2 LINE L1 -74 6090 5914 2186 106 0 3 chr1 18013374 18013681 -224650672 - AluSx SINE Alu 0 306 1 668 225 47 85 chr1 18013681 18013692 -224650661 - L1ME2 LINE L1 -250 5914 5916 2107 112 3 24 chr1 18013692 18013986 -224650367 - AluSq SINE Alu -25 288 1 668 225 47 85 chr1 18013986 18014006 -224650347 - L1ME2 LINE L1 -247 5917 5898 542 275 53 18 chr1 18014018 18014030 -224650323 - MIR SINE MIR -58 204 194 2183 90 0 27 chr1 18014030 18014331 -224650022 - AluSq SINE Alu -20 293 1 542 275 53 18 chr1 18014331 18014489 -224649864 - MIR SINE MIR -68 194 28 475 284 46 67 chr1 18014774 18014968 -224649385 + MIR3 SINE MIR 18 207 -1 2114 112 0 24 chr1 18015115 18015410 -224648943 + AluJo SINE Alu 9 296 -16 355 304 95 0 chr1 18015431 18015589 -224648764 - MIR SINE MIR -1 261 89 572 278 56 39 chr1 18016261 18016545 -224647808 + MARNA DNA Mariner 259 547 -39 24 0 0 0 chr1 18016733 18016757 -224647596 + AT_rich Low_complexity Low_complexity 1 24 0 2258 102 0 0 chr1 18016757 18017063 -224647290 - AluSx SINE Alu 0 306 1 620 117 0 109 chr1 18017065 18017202 -224647151 - MER34B LTR ERV1 -433 132 11 2326 93 0 7 chr1 18017351 18017651 -224646702 - AluSp SINE Alu -15 298 1 2139 82 22 90 chr1 18017690 18017911 -224646442 + THE1C LTR MaLR 1 235 -140 2229 78 0 62 chr1 18017911 18018217 -224646136 - AluSg SINE Alu -23 287 1 2040 87 8 4 chr1 18018217 18018482 -224645871 - AluSg SINE Alu -16 294 29 2343 88 3 3 chr1 18018490 18018784 -224645569 - AluSp SINE Alu -19 294 1 2139 82 22 90 chr1 18018784 18018954 -224645399 + THE1C LTR MaLR 241 375 0 1886 162 23 13 chr1 18019089 18019263 -224645090 - AluJb SINE Alu -5 307 127 2193 113 3 0 chr1 18019263 18019554 -224644799 - AluSc SINE Alu -17 292 1 1886 162 23 13 chr1 18019554 18019681 -224644672 - AluJb SINE Alu -185 127 3 407 220 46 25 chr1 18019953 18020131 -224644222 - L2 LINE L2 -335 2978 2796 530 491 191 0 chr1 18020191 18020427 -224643926 - AluSg SINE Alu -28 282 2 802 126 102 47 chr1 18020430 18020645 -224643708 + LTR8A LTR ERV1 356 582 -145 2461 93 0 0 chr1 18020646 18020948 -224643405 + AluSq SINE Alu 1 302 -11 2058 128 0 32 chr1 18020948 18021260 -224643093 + AluSx SINE Alu 1 302 -10 973 186 12 0 chr1 18021262 18021429 -224642924 + AluJb SINE Alu 136 304 -8 1585 162 86 22 chr1 18021553 18021867 -224642486 - MLT1A1 LTR MaLR -18 347 14 1655 161 39 36 chr1 18021871 18022207 -224642146 - MER1B DNA MER1_type 0 337 1 194 275 0 110 chr1 18022219 18022328 -224642025 + MIR3 SINE MIR 98 194 -14 2324 109 0 13 chr1 18022403 18022716 -224641637 - AluSc SINE Alu 0 309 1 541 281 130 69 chr1 18022717 18023179 -224641174 + L2 LINE L2 2229 2718 -596 962 130 7 0 chr1 18023179 18023317 -224641036 + AluSg SINE Alu 1 139 -171 2643 55 0 3 chr1 18023322 18023630 -224640723 + AluY SINE Alu 1 307 -4 2400 78 7 3 chr1 18023641 18023936 -224640417 + AluSc SINE Alu 1 296 -13 1745 137 29 7 chr1 18024036 18024342 -224640011 + MER41A LTR ERV1 242 554 0 2145 128 0 13 chr1 18024368 18024680 -224639673 + AluSx SINE Alu 1 308 -4 233 259 0 0 chr1 18024681 18024735 -224639618 + L1ME LINE L1 5609 5662 -459 2477 93 0 0 chr1 18024784 18025095 -224639258 - AluY SINE Alu 0 311 1 2044 86 0 8 chr1 18025108 18025365 -224638988 - AluSq SINE Alu -2 311 57 253 254 38 26 chr1 18025999 18026119 -224638234 + MIR SINE MIR 3 119 -89 1849 118 0 0 chr1 18026146 18026391 -224637962 + AluSx SINE Alu 1 245 -67 2231 128 0 0 chr1 18026703 18027001 -224637352 - AluSx SINE Alu -5 307 10 317 219 52 21 chr1 18027037 18027133 -224637220 - U13 snRNA snRNA -2 102 4 2202 101 3 3 chr1 18027155 18027474 -224636879 - AluSx SINE Alu 0 319 1 738 174 8 0 chr1 18027771 18027903 -224636450 - FLAM_C SINE Alu 0 133 1 180 0 0 0 chr1 18027906 18027926 -224636427 + (TA)n Simple_repeat Simple_repeat 2 21 0 2481 72 0 7 chr1 18027926 18028230 -224636123 - AluY SINE Alu -9 302 1 1525 130 49 16 chr1 18028296 18028542 -224635811 + AluSx SINE Alu 34 287 -25 1362 120 162 39 chr1 18028662 18028921 -224635432 + AluSg1 SINE Alu 1 291 -18 2144 115 10 7 chr1 18028952 18029257 -224635096 + AluSx SINE Alu 2 307 -5 581 319 29 67 chr1 18029278 18029726 -224634627 + L1MEc LINE L1 36 466 -5930 873 224 0 57 chr1 18029803 18030013 -224634340 - AluJo SINE Alu -39 273 76 2147 112 14 0 chr1 18030014 18030310 -224634043 - AluSq SINE Alu -13 300 1 2076 133 13 3 chr1 18030312 18030612 -224633741 - AluSx SINE Alu -9 303 1 199 254 63 16 chr1 18031079 18031142 -224633211 + MIR3 SINE MIR 91 156 -52 1240 102 6 17 chr1 18031205 18031382 -224632971 + AluSg SINE Alu 9 183 -127 954 88 15 0 chr1 18031483 18031620 -224632733 + L1PB3 LINE L1 5417 5555 -599 3414 132 16 44 chr1 18031671 18031718 -224632635 + L1PB3 LINE L1 5557 5604 -550 3349 74 11 9 chr1 18031718 18032175 -224632178 - LTR22A LTR ERVK 0 458 1 3414 132 16 44 chr1 18032175 18032248 -224632105 + L1PB3 LINE L1 5604 5678 -476 1718 122 107 19 chr1 18032248 18032518 -224631835 + AluSx SINE Alu 1 294 -18 3414 132 16 44 chr1 18032518 18033008 -224631345 + L1PB3 LINE L1 5678 6151 -3 2072 143 3 3 chr1 18033028 18033329 -224631024 + AluSx SINE Alu 1 301 -11 1847 179 3 3 chr1 18033334 18033646 -224630707 + AluSx SINE Alu 1 312 0 579 204 18 133 chr1 18033667 18033893 -224630460 - MER39 LTR ERV1 -175 532 333 25 0 0 0 chr1 18034067 18034092 -224630261 + AT_rich Low_complexity Low_complexity 1 25 0 1356 124 5 5 chr1 18034530 18034724 -224629629 - AluSg/x SINE Alu -15 295 102 2522 96 0 0 chr1 18034727 18035040 -224629313 - AluSq SINE Alu 0 313 1 2210 95 9 41 chr1 18035046 18035362 -224628991 - AluSq SINE Alu -6 307 2 2505 84 3 0 chr1 18035373 18035682 -224628671 - AluSp SINE Alu -3 310 1 516 71 38 8 chr1 18035737 18035948 -224628405 + AluSp SINE Alu 1 296 -17 2616 47 0 0 chr1 18036039 18036336 -224628017 + AluY SINE Alu 1 297 -14 984 161 0 0 chr1 18036336 18036479 -224627874 + AluSg/x SINE Alu 134 276 -36 216 0 0 0 chr1 18036479 18036503 -224627850 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1471 155 92 15 chr1 18036586 18036857 -224627496 - AluJb SINE Alu -20 292 1 2103 123 7 7 chr1 18036882 18037183 -224627170 - AluSx SINE Alu -10 302 2 1336 150 0 52 chr1 18038009 18038182 -224626171 - AluJo SINE Alu -6 306 146 2062 111 24 17 chr1 18038182 18038479 -224625874 - AluSx SINE Alu -13 299 1 1336 150 0 52 chr1 18038479 18038538 -224625815 - AluJo SINE Alu -166 146 86 439 180 126 0 chr1 18038538 18038626 -224625727 + L1ME3A LINE L1 6044 6150 -20 567 96 0 0 chr1 18038626 18038709 -224625644 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 439 180 126 0 chr1 18038709 18038731 -224625622 + L1ME3A LINE L1 6150 6168 -2 2074 164 0 0 chr1 18038735 18039040 -224625313 + AluSx SINE Alu 1 305 -7 1417 137 0 0 chr1 18038831 18039042 -224625311 + AluSg/x SINE Alu 97 307 -5 2301 107 3 0 chr1 18039042 18039341 -224625012 + AluSp SINE Alu 1 300 -13 2087 122 0 4 chr1 18039354 18039632 -224624721 + AluSx SINE Alu 1 277 -35 1115 77 15 52 chr1 18039632 18040097 -224624256 + MER61-int LTR ERV1 1907 2497 -2720 959 104 0 0 chr1 18040278 18040432 -224623921 + MER61-int LTR ERV1 2486 2639 -2578 2212 99 7 3 chr1 18040432 18040735 -224623618 + AluSg SINE Alu 2 305 -5 406 234 74 11 chr1 18040776 18040951 -224623402 + L2 LINE L2 2807 2992 -321 1677 171 3 13 chr1 18040986 18041291 -224623062 - AluJo SINE Alu -10 302 1 277 284 62 0 chr1 18041395 18041476 -224622877 + L2 LINE L2 3005 3090 -182 238 317 132 24 chr1 18041773 18041940 -224622413 + MIR SINE MIR 31 215 -47 730 219 84 0 chr1 18041944 18042122 -224622231 + MIR SINE MIR 70 262 0 2150 105 0 3 chr1 18042224 18042519 -224621834 - AluSg SINE Alu -14 296 3 1268 103 0 0 chr1 18042521 18042695 -224621658 - AluSg/x SINE Alu -6 306 133 432 81 0 0 chr1 18042797 18042859 -224621494 + Alu SINE Alu 239 300 -11 327 286 28 99 chr1 18042867 18042900 -224621453 - MLT1I LTR MaLR -46 363 329 2248 86 0 10 chr1 18042900 18043033 -224621320 + AluSg SINE Alu 1 134 -176 2128 112 0 3 chr1 18043033 18043337 -224621016 + AluSg SINE Alu 1 303 -7 2248 86 0 10 chr1 18043337 18043504 -224620849 + AluSg SINE Alu 134 298 -12 1983 113 3 36 chr1 18043506 18043815 -224620538 + AluY SINE Alu 3 301 -10 327 286 28 99 chr1 18043815 18043960 -224620393 - MLT1I LTR MaLR -81 328 195 1909 149 3 0 chr1 18044156 18044457 -224619896 - AluSx SINE Alu -10 302 1 581 264 90 12 chr1 18044487 18044692 -224619661 - MIR SINE MIR -1 261 41 2192 82 3 3 chr1 18044692 18044984 -224619369 - AluSp SINE Alu -21 292 1 581 264 90 12 chr1 18044984 18045006 -224619347 - MIR SINE MIR -221 41 22 830 174 0 8 chr1 18045121 18045253 -224619100 + FLAM_C SINE Alu 1 131 -2 36 53 0 0 chr1 18045496 18045553 -224618800 + AT_rich Low_complexity Low_complexity 1 57 0 620 26 0 0 chr1 18045559 18045637 -224618716 - L1PA3 LINE L1 0 6155 6078 502 266 56 0 chr1 18045665 18045808 -224618545 - MIR SINE MIR -107 155 5 400 145 16 0 chr1 18045990 18046052 -224618301 + AluS SINE Alu 2 64 -249 1137 200 79 0 chr1 18046240 18046520 -224617833 - AluSq SINE Alu -1 302 1 498 329 31 4 chr1 18046523 18046748 -224617605 + L2 LINE L2 2308 2538 -776 493 108 0 0 chr1 18046748 18046813 -224617540 - AluJ/FLAM SINE Alu -246 66 2 357 299 136 0 chr1 18046823 18046970 -224617383 + MIR SINE MIR 81 247 -15 2136 117 0 0 chr1 18047564 18047854 -224616499 - AluSx SINE Alu -22 290 1 218 305 0 0 chr1 18047928 18047987 -224616366 + C-rich Low_complexity Low_complexity 2 60 0 2160 126 0 0 chr1 18048126 18048436 -224615917 - AluSx SINE Alu -2 310 1 391 325 44 58 chr1 18049173 18049268 -224615085 + MIR SINE MIR 58 153 -109 846 146 0 0 chr1 18049268 18049391 -224614962 + FLAM_C SINE Alu 1 123 -10 391 325 44 58 chr1 18049391 18049501 -224614852 + MIR SINE MIR 153 260 -2 1011 147 0 6 chr1 18049503 18049666 -224614687 - AluSg/x SINE Alu -12 298 137 419 337 35 25 chr1 18049979 18050178 -224614175 - L2 LINE L2 0 3313 3113 514 283 70 6 chr1 18050319 18050500 -224613853 - MIR SINE MIR -47 215 25 481 252 17 8 chr1 18050992 18051111 -224613242 + MIR SINE MIR 15 134 -128 2021 116 7 7 chr1 18051140 18051432 -224612921 - AluSx SINE Alu -20 292 1 1660 173 3 3 chr1 18051441 18051730 -224612623 - AluJo SINE Alu -23 289 1 2060 123 0 0 chr1 18051764 18052070 -224612283 + AluSx SINE Alu 1 306 0 24 0 0 0 chr1 18052070 18052094 -224612259 + AT_rich Low_complexity Low_complexity 1 24 0 605 278 56 39 chr1 18052282 18052566 -224611787 - MARNA DNA Mariner -39 547 259 2209 88 3 55 chr1 18052811 18053141 -224611212 - AluSp SINE Alu 0 313 1 2249 104 10 0 chr1 18053143 18053451 -224610902 - AluSx SINE Alu -1 311 1 469 202 24 24 chr1 18054145 18054269 -224610084 + MER20 DNA MER1_type 1 124 -95 2165 107 0 19 chr1 18054297 18054614 -224609739 - AluSx SINE Alu -1 311 1 1663 195 20 0 chr1 18054649 18054951 -224609402 - AluJb SINE Alu -4 308 1 204 243 0 0 chr1 18056014 18056051 -224608302 - MIR SINE MIR -193 69 33 317 287 68 12 chr1 18056169 18056334 -224608019 + MIR SINE MIR 25 207 -55 1645 139 68 7 chr1 18056337 18056618 -224607735 - AluSx SINE Alu -5 307 10 2051 124 0 7 chr1 18056670 18056977 -224607376 - AluSx SINE Alu -7 305 1 1084 201 18 27 chr1 18057006 18057230 -224607123 - MER58A DNA MER1_type 0 224 3 2218 109 0 34 chr1 18057524 18057846 -224606507 + AluSx SINE Alu 1 311 -1 2176 81 3 20 chr1 18057898 18058195 -224606158 + AluSp SINE Alu 2 293 -20 367 226 0 21 chr1 18058246 18058339 -224606014 - MIR SINE MIR -51 211 121 1813 148 23 7 chr1 18058342 18058645 -224605708 + AluJb SINE Alu 5 312 0 1369 112 9 40 chr1 18058647 18058871 -224605482 + AluSg/x SINE Alu 83 299 -11 199 334 73 11 chr1 18058871 18058974 -224605379 - MIR SINE MIR -84 124 14 294 347 74 17 chr1 18059787 18059963 -224604390 - MIR3 SINE MIR -3 205 20 292 271 233 45 chr1 18060094 18060194 -224604159 - L3 LINE CR1 -16 1561 1428 2168 62 4 4 chr1 18060194 18060492 -224603861 - AluSp SINE Alu 0 312 15 292 271 233 45 chr1 18060492 18060523 -224603830 - L3 LINE CR1 -149 1428 1404 784 269 25 33 chr1 18060544 18060786 -224603567 - MIR SINE MIR -15 247 8 264 274 72 62 chr1 18061351 18061507 -224602846 - MIR SINE MIR -69 139 33 633 170 0 0 chr1 18061968 18062062 -224602291 + FRAM SINE Alu 10 103 -73 2202 114 0 9 chr1 18062083 18062398 -224601955 - AluSx SINE Alu 0 312 1 491 306 166 0 chr1 18062415 18062572 -224601781 - MIR SINE MIR -12 250 68 277 310 30 10 chr1 18062613 18062713 -224601640 - MIR3 SINE MIR -102 106 5 193 358 101 0 chr1 18062726 18062835 -224601518 + MIR SINE MIR 34 153 -55 1898 102 3 99 chr1 18063011 18063334 -224601019 + AluSx SINE Alu 11 302 -10 1254 108 72 0 chr1 18063339 18063374 -224600979 + AluJb SINE Alu 83 114 -198 567 0 0 0 chr1 18063374 18063437 -224600916 + (CA)n Simple_repeat Simple_repeat 2 64 0 1254 108 72 0 chr1 18063437 18063595 -224600758 + AluJb SINE Alu 114 290 -22 270 314 0 48 chr1 18063656 18063761 -224600592 - MIR SINE MIR -131 131 32 352 315 39 0 chr1 18064381 18064508 -224599845 + MIR SINE MIR 22 153 -55 930 129 0 0 chr1 18064537 18064669 -224599684 + FRAM SINE Alu 10 141 -35 222 37 0 0 chr1 18064674 18064701 -224599652 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr1 18064708 18064729 -224599624 + AT_rich Low_complexity Low_complexity 1 21 0 2044 152 3 0 chr1 18064736 18065046 -224599307 + AluSx SINE Alu 1 311 -1 289 297 91 3 chr1 18065405 18065573 -224598780 + MIR SINE MIR 12 248 -14 1768 163 10 7 chr1 18065637 18065943 -224598410 + AluSx SINE Alu 1 307 -5 2000 142 30 0 chr1 18066862 18067164 -224597189 - AluSx SINE Alu -1 311 1 1589 163 52 7 chr1 18067214 18067515 -224596838 - AluJo SINE Alu 0 313 1 518 104 28 9 chr1 18067535 18067641 -224596712 + (TCCA)n Simple_repeat Simple_repeat 2 109 0 336 343 63 14 chr1 18067641 18067784 -224596569 - L2 LINE L2 0 3272 3123 401 277 43 14 chr1 18067811 18067952 -224596401 + MIR SINE MIR 114 258 -4 229 204 0 0 chr1 18067954 18068003 -224596350 + (ATG)n Simple_repeat Simple_repeat 2 50 0 2127 123 3 0 chr1 18068005 18068307 -224596046 - AluSx SINE Alu -9 303 1 2322 100 0 0 chr1 18068827 18069136 -224595217 - AluSq SINE Alu -4 309 1 204 308 64 0 chr1 18069144 18069222 -224595131 + L2 LINE L2 3187 3269 -3 513 268 24 24 chr1 18069271 18069439 -224594914 + MIR SINE MIR 17 184 -78 355 265 55 115 chr1 18069637 18069737 -224594616 + MIR SINE MIR 63 147 -115 2064 103 40 3 chr1 18069737 18070038 -224594315 + AluSx SINE Alu 1 312 0 355 265 55 115 chr1 18070038 18070137 -224594216 + MIR SINE MIR 147 250 -12 458 223 49 3 chr1 18070470 18070611 -224593742 + MIR SINE MIR 36 186 -75 2152 114 0 0 chr1 18071598 18071895 -224592458 - AluSx SINE Alu -11 301 5 704 196 34 0 chr1 18072190 18072338 -224592015 + MIR SINE MIR 110 262 0 831 134 0 0 chr1 18072350 18072469 -224591884 - FLAM_C SINE Alu -19 124 6 2123 121 0 19 chr1 18072957 18073133 -224591220 - AluSx SINE Alu -3 309 140 2281 75 0 3 chr1 18073133 18073427 -224590926 - AluY SINE Alu -18 293 1 2123 121 0 19 chr1 18073427 18073565 -224590788 - AluSx SINE Alu -172 140 1 2186 115 3 0 chr1 18073588 18073893 -224590460 - AluSx SINE Alu -6 306 1 3621 116 19 17 chr1 18073916 18074442 -224589911 - MER1A DNA MER1_type 0 527 1 345 283 0 53 chr1 18074453 18074566 -224589787 + MIR3 SINE MIR 10 116 -92 413 320 73 56 chr1 18074812 18075153 -224589200 - L2 LINE L2 0 3272 2926 1692 181 13 3 chr1 18075202 18075500 -224588853 + AluJb SINE Alu 1 301 -11 821 255 49 45 chr1 18075719 18075875 -224588478 - MER102b DNA MER1_type -1137 291 132 1594 169 41 3 chr1 18075875 18076043 -224588310 - AluJo SINE Alu -11 301 116 261 0 0 0 chr1 18076043 18076072 -224588281 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1594 169 41 3 chr1 18076072 18076193 -224588160 - AluJo SINE Alu -196 116 1 821 255 49 45 chr1 18076193 18076322 -224588031 - MER102b DNA MER1_type -1296 132 5 211 200 0 0 chr1 18076716 18076734 -224587619 + A-rich Low_complexity Low_complexity 1 18 -27 963 112 0 8 chr1 18076734 18076868 -224587485 + FLAM_C SINE Alu 1 133 0 211 200 0 0 chr1 18076868 18076894 -224587459 + A-rich Low_complexity Low_complexity 17 45 0 807 162 88 0 chr1 18076943 18077091 -224587262 + FRAM SINE Alu 14 174 -2 361 264 0 22 chr1 18077315 18077406 -224586947 + L2 LINE L2 3210 3298 -15 202 206 16 48 chr1 18077464 18077527 -224586826 - L2 LINE L2 -106 3207 3147 244 370 16 8 chr1 18077572 18077699 -224586654 + L2 LINE L2 3166 3293 -20 254 236 115 47 chr1 18078003 18078152 -224586201 + MIR SINE MIR 38 202 -60 48 72 0 0 chr1 18078657 18078754 -224585599 + GC_rich Low_complexity Low_complexity 1 97 0 352 237 144 10 chr1 18080353 18080450 -224583903 + L2 LINE L2 3204 3313 0 2083 145 0 16 chr1 18080567 18080704 -224583649 + AluSx SINE Alu 1 139 -173 2132 128 3 0 chr1 18080704 18081008 -224583345 + AluSq SINE Alu 1 305 -8 2083 145 0 16 chr1 18081008 18081187 -224583166 + AluSx SINE Alu 139 312 0 1658 174 4 4 chr1 18081189 18081470 -224582883 + AluJo SINE Alu 5 285 -27 188 268 54 0 chr1 18081513 18081569 -224582784 - L2 LINE L2 -4 3268 3210 369 303 26 51 chr1 18081701 18081896 -224582457 - MIR SINE MIR -52 210 21 2119 102 3 0 chr1 18082149 18082454 -224581899 - AluSq SINE Alu 0 306 1 1991 109 3 24 chr1 18082465 18082759 -224581594 - AluSq SINE Alu -25 288 1 234 91 0 0 chr1 18082767 18082800 -224581553 + (TA)n Simple_repeat Simple_repeat 2 34 0 2192 84 0 17 chr1 18082807 18083104 -224581249 - AluSq SINE Alu -21 292 1 22 94 0 0 chr1 18083106 18083170 -224581183 + AT_rich Low_complexity Low_complexity 1 64 0 2521 113 3 3 chr1 18083243 18083598 -224580755 - THE1B LTR MaLR -9 355 1 186 71 0 0 chr1 18083602 18083630 -224580723 + (TG)n Simple_repeat Simple_repeat 2 29 0 863 157 138 0 chr1 18083634 18083793 -224580560 - MER63B DNA MER1_type -255 181 1 217 209 0 0 chr1 18084366 18084409 -224579944 + L2 LINE L2 2919 2961 -311 231 182 0 0 chr1 18084429 18084473 -224579880 - L2 LINE L2 -310 2962 2919 465 272 113 41 chr1 18084917 18085112 -224579241 - MIR SINE MIR -45 217 9 285 302 124 0 chr1 18086219 18086348 -224578005 - L1ME4a LINE L1 0 6121 5977 196 324 29 0 chr1 18086364 18086432 -224577921 - L2 LINE L2 0 3313 3244 * 481 292 77 18 chr1 18086425 18086653 -224577700 + MIR SINE MIR 22 261 -1 960 236 114 84 chr1 18086655 18087152 -224577201 - MER34 LTR ERV1 0 542 27 2110 121 16 0 chr1 18087152 18087457 -224576896 - AluSx SINE Alu -2 310 1 960 236 114 84 chr1 18087457 18087485 -224576868 - MER34 LTR ERV1 -515 27 1 801 233 30 99 chr1 18087487 18087527 -224576826 - L2 LINE L2 -68 3245 3204 2053 132 0 0 chr1 18087527 18087831 -224576522 - AluSx SINE Alu -8 304 1 801 233 30 99 chr1 18087831 18088163 -224576190 - L2 LINE L2 -109 3204 2899 202 366 38 53 chr1 18088325 18088456 -224575897 - L2 LINE L2 -4 3268 3140 726 318 134 15 chr1 18088466 18088869 -224575484 - L2 LINE L2 -568 2746 2246 2102 119 3 3 chr1 18088869 18089179 -224575174 + AluSq SINE Alu 1 310 -3 726 318 134 15 chr1 18089179 18089379 -224574974 - L2 LINE L2 -1068 2246 2071 276 338 44 54 chr1 18089404 18089608 -224574745 - MIR SINE MIR -25 237 36 274 315 0 0 chr1 18089705 18089778 -224574575 - L2 LINE L2 -11 3261 3189 238 260 110 27 chr1 18090270 18090343 -224574010 - MIR SINE MIR -92 116 38 241 308 89 14 chr1 18090683 18090846 -224573507 + MIR SINE MIR 3 180 -68 * 601 317 53 18 chr1 18090841 18090909 -224573444 - MIR SINE MIR 0 262 198 1815 141 3 66 chr1 18090909 18091228 -224573125 - AluSx SINE Alu -13 299 1 601 317 53 18 chr1 18091228 18091386 -224572967 - MIR SINE MIR -64 198 28 207 368 14 21 chr1 18091521 18091665 -224572688 - MIR3 SINE MIR -56 152 10 501 284 46 67 chr1 18091671 18091865 -224572488 + MIR3 SINE MIR 18 207 -1 2017 112 0 24 chr1 18092012 18092307 -224572046 + AluJo SINE Alu 9 296 -16 385 304 85 45 chr1 18092328 18092529 -224571824 - MIR SINE MIR -1 261 53 371 263 127 0 chr1 18092913 18093031 -224571322 - MIR3 SINE MIR -22 186 54 1816 172 6 16 chr1 18093173 18093487 -224570866 - AluJo SINE Alu -1 311 1 260 293 0 24 chr1 18093636 18093734 -224570619 + MIR SINE MIR 48 136 -72 225 283 62 9 chr1 18093735 18093848 -224570505 + MER103 DNA DNA 46 164 -2 1877 136 35 0 chr1 18093965 18094251 -224570102 - AluSx SINE Alu -16 296 1 512 282 35 0 chr1 18094900 18095070 -224569283 + MIR3 SINE MIR 22 197 -11 454 311 5 62 chr1 18095247 18095440 -224568913 - MER5A DNA MER1_type -1 188 7 1043 201 6 0 chr1 18095471 18095645 -224568708 + FAM SINE Alu 1 175 0 2209 121 0 6 chr1 18095656 18095970 -224568383 + AluSx SINE Alu 1 312 0 419 338 0 21 chr1 18096089 18096234 -224568119 - MER5A DNA MER1_type -2 187 46 978 211 0 0 chr1 18096605 18096887 -224567466 + (TCCA)n Simple_repeat Simple_repeat 1 282 0 496 388 67 7 chr1 18096894 18097193 -224567160 - L2 LINE L2 0 3272 2956 814 254 36 9 chr1 18097667 18097887 -224566466 + MIR SINE MIR 12 237 -25 361 303 79 7 chr1 18097974 18098126 -224566227 + MIR SINE MIR 31 193 -69 264 346 74 31 chr1 18098763 18098925 -224565428 - MIR SINE MIR -73 189 21 2238 99 3 0 chr1 18099167 18099459 -224564894 - AluSp SINE Alu -20 293 1 496 297 132 9 chr1 18099556 18099768 -224564585 + MIR SINE MIR 19 256 -6 206 324 63 18 chr1 18100090 18100201 -224564152 - MIR SINE MIR -59 149 34 401 267 69 0 chr1 18100503 18100619 -224563734 + MIR3 SINE MIR 6 129 -79 201 325 13 26 chr1 18100621 18100698 -224563655 - L2 LINE L2 0 3313 3238 1920 157 0 7 chr1 18100727 18101032 -224563321 + AluJb SINE Alu 1 303 -9 268 300 70 0 chr1 18101057 18101157 -224563196 + MIR SINE MIR 156 262 0 197 254 0 68 chr1 18101386 18101445 -224562908 + L2 LINE L2 3255 3309 -4 316 237 9 79 chr1 18101799 18101829 -224562524 + L2 LINE L2 3191 3222 -91 2046 141 0 0 chr1 18101829 18102128 -224562225 - AluJb SINE Alu -11 301 3 316 237 9 79 chr1 18102128 18102211 -224562142 + L2 LINE L2 3222 3296 -17 243 61 0 0 chr1 18102215 18102248 -224562105 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 388 281 109 8 chr1 18102271 18102399 -224561954 - MIR SINE MIR -108 154 14 222 309 31 21 chr1 18102399 18102496 -224561857 + L3 LINE CR1 1475 1572 -5 868 308 8 8 chr1 18103159 18103406 -224560947 + MIR SINE MIR 6 252 -10 1524 192 68 0 chr1 18103592 18103915 -224560438 - MLT1A1 LTR MaLR -12 353 9 196 323 140 11 chr1 18104475 18104568 -224559785 - L2 LINE L2 -29 3243 3139 1247 146 24 14 chr1 18104754 18104966 -224559387 - MER20 DNA MER1_type -2 217 4 2129 119 0 3 chr1 18105966 18106259 -224558094 - AluSx SINE Alu -20 292 1 464 289 7 20 chr1 18106820 18106972 -224557381 - MIR SINE MIR -6 256 107 368 292 59 15 chr1 18107621 18107756 -224556597 + MIR SINE MIR 38 174 -62 181 271 68 17 chr1 18108432 18108491 -224555862 + L3b LINE CR1 1421 1482 -101 2178 258 162 15 chr1 18108711 18110115 -224554238 - L2 LINE L2 -3 3310 1671 2066 148 0 0 chr1 18110115 18110426 -224553927 - AluSx SINE Alu -1 311 1 2178 258 162 15 chr1 18110426 18110464 -224553889 - L2 LINE L2 -1642 1671 1640 266 279 48 39 chr1 18111266 18111370 -224552983 + L2 LINE L2 3202 3306 -7 276 309 73 1 chr1 18111701 18111837 -224552516 + MIR SINE MIR 59 202 -6 197 139 23 0 chr1 18112165 18112208 -224552145 + GA-rich Low_complexity Low_complexity 1 44 0 255 316 51 0 chr1 18112796 18112875 -224551478 + MIR3 SINE MIR 79 161 -47 318 248 0 74 chr1 18113835 18113956 -224550397 + MER5B DNA MER1_type 45 156 -22 271 338 78 47 chr1 18113964 18114323 -224550030 - L2 LINE L2 -218 3054 2675 243 281 0 16 chr1 18115393 18115457 -224548896 - MIR SINE MIR -183 79 17 246 279 96 29 chr1 18115496 18115600 -224548753 + MIR3 SINE MIR 93 203 -5 2128 113 7 7 chr1 18115629 18115938 -224548415 - AluSx SINE Alu -3 309 1 450 199 37 32 chr1 18115938 18116075 -224548278 - MIR SINE MIR -54 154 36 301 222 38 52 chr1 18116307 18116456 -224547897 + MIR SINE MIR 16 160 -48 1554 154 19 8 chr1 18117008 18117267 -224547086 + AluJo SINE Alu 14 275 -37 289 254 75 45 chr1 18117349 18117483 -224546870 + L1MC4a LINE L1 5798 5935 -1873 2189 110 3 0 chr1 18117611 18117912 -224546441 - AluSx SINE Alu -10 302 1 586 248 220 5 chr1 18117970 18118184 -224546169 + MIR SINE MIR 3 262 0 181 324 143 9 chr1 18119300 18119405 -224544948 + MIR SINE MIR 31 149 -113 2213 101 16 0 chr1 18119625 18119932 -224544421 + AluSx SINE Alu 1 312 0 382 118 79 13 chr1 18119945 18120021 -224544332 + MER53 DNA DNA 109 189 0 540 261 56 11 chr1 18120139 18120319 -224544034 + MIR SINE MIR 2 189 -73 258 341 87 31 chr1 18121172 18121401 -224542952 + L2 LINE L2 2934 3175 -97 1466 163 110 25 chr1 18121537 18121819 -224542534 + AluJb SINE Alu 1 306 -6 262 247 14 27 chr1 18121946 18122019 -224542334 + (TAA)n Simple_repeat Simple_repeat 1 72 0 694 269 93 23 chr1 18122038 18122254 -224542099 - MIR SINE MIR -3 259 29 1063 173 0 0 chr1 18122453 18122615 -224541738 - FRAM SINE Alu -21 155 1 1906 179 0 0 chr1 18122630 18122937 -224541416 - AluJo SINE Alu -5 307 1 1172 280 71 26 chr1 18122986 18123411 -224540942 - L2 LINE L2 -13 3300 2857 207 0 0 0 chr1 18123450 18123473 -224540880 + (CA)n Simple_repeat Simple_repeat 1 23 0 220 287 96 0 chr1 18123840 18123934 -224540419 + MIR3 SINE MIR 11 113 -95 228 330 11 11 chr1 18124336 18124424 -224539929 + (TCCA)n Simple_repeat Simple_repeat 1 88 0 495 310 29 47 chr1 18124520 18124559 -224539794 - MIR SINE MIR -25 237 199 1132 168 32 41 chr1 18124559 18124779 -224539574 + MER20 DNA MER1_type 1 218 -1 495 310 29 47 chr1 18124779 18124966 -224539387 - MIR SINE MIR -63 199 14 184 159 23 23 chr1 18126018 18126062 -224538291 + L2 LINE L2 2977 3020 -252 450 0 0 0 chr1 18127442 18127492 -224536861 + (TG)n Simple_repeat Simple_repeat 2 51 0 310 299 122 15 chr1 18127642 18127788 -224536565 + MIR SINE MIR 2 161 -47 269 255 50 113 chr1 18129093 18129234 -224535119 + L2 LINE L2 3180 3311 -2 2017 130 3 3 chr1 18129297 18129605 -224534748 + AluSx SINE Alu 1 308 -4 634 243 40 50 chr1 18129797 18129831 -224534522 - MIR SINE MIR -32 230 197 1903 156 3 13 chr1 18129831 18130001 -224534352 - AluJb SINE Alu -8 304 137 2226 86 10 3 chr1 18130001 18130302 -224534051 - AluSq SINE Alu -10 303 1 1903 156 3 13 chr1 18130302 18130438 -224533915 - AluJb SINE Alu -175 137 1 634 243 40 50 chr1 18130438 18130605 -224533748 - MIR SINE MIR -65 197 31 206 294 92 46 chr1 18131860 18131895 -224532458 - MIR SINE MIR -55 207 175 2162 190 62 56 chr1 18131895 18132396 -224531957 + MLT1D LTR MaLR 1 504 -1 206 294 92 46 chr1 18132396 18132469 -224531884 - MIR SINE MIR -87 175 94 542 330 72 4 chr1 18132730 18132966 -224531387 - MIR SINE MIR -1 261 10 341 301 29 87 chr1 18132991 18133068 -224531285 + MIR SINE MIR 51 131 -131 2096 108 13 23 chr1 18133068 18133375 -224530978 - AluSx SINE Alu -8 304 1 341 301 29 87 chr1 18133375 18133470 -224530883 + MIR SINE MIR 131 213 -49 506 265 181 84 chr1 18133619 18133868 -224530485 - L1ME4a LINE L1 -1 6120 5848 523 266 36 14 chr1 18134355 18134494 -224529859 - MIR SINE MIR -27 235 94 304 285 234 0 chr1 18134480 18134638 -224529715 - MIR SINE MIR -48 214 20 * 311 256 226 15 chr1 18134661 18134794 -224529559 + MER5B DNA MER1_type 4 164 -14 196 158 79 0 chr1 18134794 18134832 -224529521 + MIR3 SINE MIR 155 195 -13 1021 94 0 82 chr1 18135349 18135519 -224528834 + AluSx SINE Alu 1 156 -156 263 274 24 24 chr1 18136211 18136295 -224528058 + MIR SINE MIR 14 97 -165 2277 137 3 62 chr1 18136626 18136693 -224527660 - MLT1A1 LTR MaLR 0 365 296 2076 137 0 0 chr1 18136693 18136986 -224527367 - AluSx SINE Alu -13 299 7 2277 137 3 62 chr1 18136986 18137306 -224527047 - MLT1A1 LTR MaLR -69 296 1 459 284 60 51 chr1 18137481 18137652 -224526701 + MIR SINE MIR 15 190 -72 1968 137 40 0 chr1 18137652 18137952 -224526401 + AluSx SINE Alu 1 312 0 459 284 60 51 chr1 18137952 18137995 -224526358 + MIR SINE MIR 190 231 -31 860 231 16 0 chr1 18138412 18138594 -224525759 - MER3 DNA MER1_type 0 209 25 313 319 11 0 chr1 18138638 18138732 -224525621 + MIR SINE MIR 21 115 -147 1989 238 41 69 chr1 18139016 18139363 -224524990 - L1MD3 LINE L1 -2 7993 7673 2259 114 0 0 chr1 18139363 18139670 -224524683 + AluSx SINE Alu 6 312 0 1989 238 41 69 chr1 18139670 18140006 -224524347 - L1MD3 LINE L1 -322 7673 7329 1953 158 7 0 chr1 18140034 18140337 -224524016 - AluSx SINE Alu -7 305 1 316 321 154 15 chr1 18141122 18141527 -224522826 - L2 LINE L2 -236 3036 2578 238 320 39 12 chr1 18142344 18142472 -224521881 + MIR SINE MIR 15 146 -62 220 258 0 32 chr1 18142806 18142868 -224521485 - MIR SINE MIR -133 75 16 191 364 200 0 chr1 18143801 18143911 -224520442 + MIR SINE MIR 61 192 -70 347 269 48 0 chr1 18143920 18144024 -224520329 + MIR SINE MIR 106 214 -48 220 310 168 0 chr1 18144720 18144833 -224519520 - MIR SINE MIR -20 242 111 2251 115 0 0 chr1 18144873 18145185 -224519168 - AluSx SINE Alu 0 312 1 22 0 0 0 chr1 18145192 18145214 -224519139 + AT_rich Low_complexity Low_complexity 1 22 0 342 304 94 8 chr1 18145265 18145451 -224518902 - MIR3 SINE MIR -50 212 13 2020 144 0 0 chr1 18145784 18146076 -224518277 + AluJo SINE Alu 1 292 -20 198 0 0 0 chr1 18146621 18146643 -224517710 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 402 306 83 0 chr1 18146791 18146971 -224517382 - MER117 DNA MER1_type -2 195 1 1988 138 6 6 chr1 18147363 18147674 -224516679 - AluSx SINE Alu -1 311 1 218 305 53 46 chr1 18148000 18148131 -224516222 - L2 LINE L2 -15 3257 3126 473 263 53 0 chr1 18148718 18148851 -224515502 - MER5A DNA MER1_type 0 189 50 243 242 25 108 chr1 18149966 18150086 -224514267 - MIR SINE MIR -53 209 100 501 62 0 0 chr1 18150125 18150190 -224514163 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 509 252 189 18 chr1 18150221 18150443 -224513910 - MIR SINE MIR 0 262 3 279 0 0 0 chr1 18150569 18150600 -224513753 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 380 299 30 6 chr1 18150622 18150698 -224513655 + (TCCA)n Simple_repeat Simple_repeat 4 77 -97 822 221 96 40 chr1 18150698 18150897 -224513456 - MER63A DNA MER1_type 0 210 1 380 299 30 6 chr1 18150897 18150987 -224513366 + (TCCA)n Simple_repeat Simple_repeat 77 174 0 243 229 0 0 chr1 18151018 18151079 -224513274 + (TCCA)n Simple_repeat Simple_repeat 2 62 0 283 356 22 0 chr1 18151092 18151227 -224513126 + (TCCA)n Simple_repeat Simple_repeat 3 140 0 244 290 129 0 chr1 18151231 18151324 -224513029 - L2 LINE L2 0 3272 3168 470 290 8 15 chr1 18152036 18152167 -224512186 - MER5A DNA MER1_type -4 185 56 575 326 12 6 chr1 18152356 18152528 -224511825 + MIR SINE MIR 15 187 -75 186 308 56 56 chr1 18152663 18152770 -224511583 - MIR SINE MIR -154 108 2 978 221 50 0 chr1 18153617 18153816 -224510537 - MER3 DNA MER1_type 0 209 1 285 290 88 20 chr1 18154246 18154395 -224509958 - MIR SINE MIR -62 146 30 223 353 131 19 chr1 18155148 18155468 -224508885 - L2 LINE L2 0 3272 2917 439 326 53 21 chr1 18155492 18155679 -224508674 - MIR SINE MIR -5 257 65 211 374 23 29 chr1 18155664 18155835 -224508518 - L2 LINE L2 -436 2878 2709 * 347 241 13 0 chr1 18155845 18155924 -224508429 - L2 LINE L2 -2 3311 3232 373 237 82 10 chr1 18156277 18156374 -224507979 + MIR SINE MIR 81 184 -78 201 129 0 0 chr1 18157081 18157112 -224507241 + (TCC)n Simple_repeat Simple_repeat 2 32 0 2055 98 3 57 chr1 18158498 18158815 -224505538 + AluSx SINE Alu 1 300 -12 405 209 23 0 chr1 18158982 18159068 -224505285 + MER20 DNA MER1_type 106 193 -26 399 259 28 56 chr1 18159413 18159556 -224504797 + MER5B DNA MER1_type 8 146 -32 278 278 169 68 chr1 18159628 18159823 -224504530 + L3 LINE CR1 1142 1378 -199 2224 113 0 0 chr1 18159823 18160124 -224504229 - AluSx SINE Alu -11 301 1 278 278 169 68 chr1 18160124 18160223 -224504130 + L3 LINE CR1 1378 1466 -111 330 273 153 7 chr1 18162164 18162314 -224502039 + MIR3 SINE MIR 12 183 -25 192 329 58 15 chr1 18162707 18162844 -224501509 + MIR3 SINE MIR 33 175 -33 2335 158 69 2 chr1 18165238 18165719 -224498634 - L1MB3 LINE L1 -35 6148 5636 464 303 24 36 chr1 18166353 18166518 -224497835 + MIR SINE MIR 15 177 -85 2040 120 27 0 chr1 18166828 18167120 -224497233 + AluSx SINE Alu 12 311 -1 312 294 33 0 chr1 18167441 18167533 -224496820 + L3 LINE CR1 1297 1391 -186 445 262 68 44 chr1 18167727 18167769 -224496584 + Charlie8 DNA MER1_type 25 65 -276 1841 142 0 21 chr1 18167769 18168088 -224496265 - AluJb SINE Alu 0 313 1 445 262 68 44 chr1 18168088 18168250 -224496103 + Charlie8 DNA MER1_type 65 235 -106 336 335 108 0 chr1 18169376 18169543 -224494810 + MIR SINE MIR 46 230 -32 598 252 26 0 chr1 18170439 18170590 -224493763 + MER45A DNA AcHobo 24 178 0 322 294 67 17 chr1 18170636 18170755 -224493598 - MIR SINE MIR -61 147 23 181 292 0 0 chr1 18170965 18171013 -224493340 + MIR SINE MIR 104 151 -57 250 304 63 0 chr1 18171529 18171608 -224492745 - L3b LINE CR1 -197 1386 1303 2155 97 3 29 chr1 18172100 18172409 -224491944 - AluSx SINE Alu -7 305 5 202 194 0 0 chr1 18172853 18172889 -224491464 + (CTCA)n Simple_repeat Simple_repeat 1 36 0 183 310 23 35 chr1 18172997 18173084 -224491269 + MIR SINE MIR 51 136 -72 227 320 117 5 chr1 18174203 18174409 -224489944 + L2 LINE L2 2835 3063 -250 411 348 71 9 chr1 18175774 18175984 -224488369 + L2 LINE L2 3077 3299 -14 2317 63 0 20 chr1 18176262 18176565 -224487788 - AluY SINE Alu -14 297 1 251 283 0 0 chr1 18177592 18177652 -224486701 + L2 LINE L2 3254 3313 0 180 316 26 26 chr1 18177827 18177903 -224486450 + L2 LINE L2 3195 3270 -2 325 315 107 0 chr1 18177947 18178096 -224486257 - MIR SINE MIR -74 188 24 238 255 0 0 chr1 18178510 18178557 -224485796 - L2 LINE L2 -5 3267 3221 368 184 0 138 chr1 18179236 18179308 -224485045 + MIR3 SINE MIR 81 135 -73 1166 177 22 9 chr1 18179308 18179534 -224484819 + L1MB7 LINE L1 5956 6184 0 368 184 0 138 chr1 18179534 18179570 -224484783 + MIR3 SINE MIR 135 174 -34 584 318 27 9 chr1 18179642 18179862 -224484491 - MIR SINE MIR -37 225 2 2009 102 29 0 chr1 18180111 18180428 -224483925 + AluY SINE Alu 1 325 0 2415 92 0 6 chr1 18180458 18180772 -224483581 + AluSx SINE Alu 1 312 0 218 329 24 0 chr1 18180829 18180914 -224483439 - L2 LINE L2 -47 3266 3180 377 307 176 8 chr1 18181022 18181347 -224483006 - L2 LINE L2 -321 2992 2624 355 265 109 41 chr1 18182127 18182274 -224482079 + MIR3 SINE MIR 20 176 -32 567 328 39 26 chr1 18182309 18182538 -224481815 + MIR SINE MIR 2 233 -29 290 359 55 7 chr1 18183210 18183355 -224480998 + MIR3 SINE MIR 48 199 -9 330 331 90 0 chr1 18183624 18183769 -224480584 - MIR SINE MIR -59 203 46 269 329 94 28 chr1 18185562 18185775 -224478578 - L2 LINE L2 -427 2887 2661 363 348 77 23 chr1 18185950 18186171 -224478182 + MIR SINE MIR 21 253 -9 612 331 95 14 chr1 18186303 18186599 -224477754 - L2 LINE L2 0 3313 2994 547 297 7 7 chr1 18186953 18187101 -224477252 - MIR SINE MIR -56 206 59 181 354 10 40 chr1 18187536 18187635 -224476718 + MIR SINE MIR 52 147 -61 409 318 128 9 chr1 18187849 18188060 -224476293 - MIR SINE MIR -12 250 15 531 322 128 37 chr1 18188303 18188889 -224475464 - L2 LINE L2 0 3313 2640 1959 129 10 22 chr1 18188889 18189200 -224475153 + AluJb SINE Alu 1 307 -5 2162 134 0 0 chr1 18189212 18189517 -224474836 + AluSx SINE Alu 1 305 -7 740 269 78 59 chr1 18189593 18190002 -224474351 - MER96B DNA MER1_type 0 417 1 265 341 23 15 chr1 18191167 18191299 -224473054 + MIR SINE MIR 116 248 -14 256 290 20 40 chr1 18191750 18191850 -224472503 + MIR SINE MIR 162 259 -3 574 294 19 6 chr1 18192472 18192632 -224471721 + MIR3 SINE MIR 15 176 -32 339 253 23 0 chr1 18193014 18193101 -224471252 + MIR SINE MIR 61 149 -59 298 283 17 75 chr1 18193215 18193335 -224471018 - MER5A DNA MER1_type -10 179 67 200 271 34 0 chr1 18193596 18193655 -224470698 - L2 LINE L2 -5 3267 3207 479 148 11 0 chr1 18194002 18194090 -224470263 + (TCCA)n Simple_repeat Simple_repeat 1 89 0 713 158 7 0 chr1 18194107 18194246 -224470107 + (TCCA)n Simple_repeat Simple_repeat 2 141 0 205 294 106 0 chr1 18194246 18194331 -224470022 - L2 LINE L2 0 3313 3220 181 234 106 0 chr1 18195631 18195678 -224468675 - L3 LINE CR1 -99 1478 1427 281 372 115 8 chr1 18195700 18195934 -224468419 + MIR SINE MIR 1 259 -3 1282 246 124 3 chr1 18196723 18197093 -224467260 - MLT1C LTR MaLR -52 415 1 195 307 53 27 chr1 18197144 18197219 -224467134 - MIR3 SINE MIR -20 188 112 831 323 82 15 chr1 18197365 18197767 -224466586 - L2 LINE L2 -12 3301 2873 188 260 156 0 chr1 18198674 18198751 -224465602 - MIR3 SINE MIR -13 195 107 454 304 123 0 chr1 18199039 18199210 -224465143 + MIR SINE MIR 6 197 -65 411 306 33 0 chr1 18199690 18199811 -224464542 - MIR3 SINE MIR 0 208 84 2159 82 28 0 chr1 18199857 18200139 -224464214 - AluSx SINE Alu -22 290 1 224 366 52 6 chr1 18200660 18200854 -224463499 + MIR3 SINE MIR 3 205 -57 414 256 40 0 chr1 18200878 18201003 -224463350 + MIR SINE MIR 78 207 -55 359 269 83 24 chr1 18201037 18201264 -224463089 - MIR SINE MIR -9 253 11 2168 110 0 7 chr1 18202034 18202342 -224462011 + AluSx SINE Alu 4 309 -3 608 259 9 60 chr1 18202444 18202660 -224461693 - MIR3 SINE MIR -1 207 3 391 306 30 101 chr1 18202660 18202920 -224461433 + L2 LINE L2 3032 3272 0 218 239 14 0 chr1 18202920 18202991 -224461362 + GA-rich Low_complexity Low_complexity 1 72 0 184 301 169 0 chr1 18204077 18204160 -224460193 - MIR3 SINE MIR 0 208 112 2021 192 31 94 chr1 18204401 18204953 -224459400 - MLT2B1 LTR ERVL 0 520 4 209 255 47 66 chr1 18205983 18206089 -224458264 - L2 LINE L2 -37 3235 3132 483 364 22 22 chr1 18206644 18206872 -224457481 + MIR SINE MIR 34 261 -1 1076 197 34 4 chr1 18208050 18208284 -224456069 - MIR SINE MIR -6 256 16 220 217 116 0 chr1 18208404 18208473 -224455880 + L2 LINE L2 3170 3246 -26 270 278 32 136 chr1 18208479 18208824 -224455529 - L2 LINE L2 -42 3230 2922 442 300 96 9 chr1 18209526 18209746 -224454607 + L2 LINE L2 2907 3145 -168 288 269 25 67 chr1 18210489 18210608 -224453745 + L2 LINE L2 3149 3262 -10 233 381 0 0 chr1 18212188 18212285 -224452068 + MIR SINE MIR 141 237 -25 277 325 159 8 chr1 18212465 18212591 -224451762 + MIR SINE MIR 117 261 -1 1880 183 35 12 chr1 18213381 18213720 -224450633 + MER7A DNA MER2_type 2 346 0 504 328 0 0 chr1 18214145 18214325 -224450028 + (TG)n Simple_repeat Simple_repeat 1 180 0 238 400 0 0 chr1 18214424 18214594 -224449759 + (TG)n Simple_repeat Simple_repeat 1 170 0 339 374 0 0 chr1 18214657 18214820 -224449533 + (TG)n Simple_repeat Simple_repeat 1 163 0 285 366 6 0 chr1 18214919 18215083 -224449270 + (TG)n Simple_repeat Simple_repeat 1 165 0 * 312 335 6 6 chr1 18214999 18215175 -224449178 + G-rich Low_complexity Low_complexity 3 178 0 344 329 20 40 chr1 18216339 18216488 -224447865 - MIR SINE MIR -10 252 107 243 0 0 0 chr1 18216709 18216736 -224447617 + (AGCTG)n Simple_repeat Simple_repeat 1 27 0 2208 110 3 0 chr1 18217125 18217426 -224446927 - AluSq SINE Alu -11 302 1 190 280 0 0 chr1 18217873 18217923 -224446430 - MIR SINE MIR -118 144 95 240 283 101 29 chr1 18218085 18218122 -224446231 + MIR SINE MIR 6 39 -223 554 248 9 0 chr1 18218122 18218235 -224446118 + MER81 DNA DNA 1 114 0 240 283 101 29 chr1 18218235 18218335 -224446018 + MIR SINE MIR 39 153 -109 330 299 110 32 chr1 18218425 18218579 -224445774 + MIR SINE MIR 47 212 -50 255 74 0 56 chr1 18218764 18218818 -224445535 + (CCCTG)n Simple_repeat Simple_repeat 3 53 0 205 250 38 50 chr1 18219317 18219397 -224444956 - MIR SINE MIR -77 185 107 23 0 0 0 chr1 18219451 18219474 -224444879 + AT_rich Low_complexity Low_complexity 1 23 0 2028 109 42 0 chr1 18219495 18219780 -224444573 - AluSq SINE Alu -16 297 1 1713 303 105 24 chr1 18219789 18220871 -224443482 - L1MC4 LINE L1 0 8042 6873 274 355 135 15 chr1 18220896 18221237 -224443116 - L1MC4a LINE L1 -1150 6658 6277 346 232 12 0 chr1 18221241 18221323 -224443030 - MER58A DNA MER1_type -19 88 6 249 33 0 0 chr1 18222325 18222355 -224441998 + (CTGGGG)n Simple_repeat Simple_repeat 3 32 0 180 111 0 0 chr1 18223531 18223558 -224440795 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 768 272 197 21 chr1 18223898 18224434 -224439919 + L2 LINE L2 2671 3311 -2 347 262 49 49 chr1 18224758 18224880 -224439473 - L1MDa LINE L1 -4041 2499 2378 231 301 150 0 chr1 18225027 18225140 -224439213 - L2 LINE L2 0 3272 3143 311 256 0 12 chr1 18225694 18225780 -224438573 - HAL1 LINE L1 -178 2329 2245 605 247 109 0 chr1 18225924 18226098 -224438255 - MER63A DNA MER1_type -15 195 3 186 314 0 43 chr1 18226596 18226666 -224437687 - MIR3 SINE MIR -133 75 9 332 343 83 22 chr1 18227703 18227884 -224436469 - MIR SINE MIR -48 214 23 270 287 148 0 chr1 18227907 18228029 -224436324 + MIR SINE MIR 51 190 -72 180 103 35 0 chr1 18228245 18228274 -224436079 + CT-rich Low_complexity Low_complexity 3 32 0 294 374 15 46 chr1 18228599 18228794 -224435559 - MIR SINE MIR -55 207 19 * 338 318 38 38 chr1 18228739 18228871 -224435482 + MIR3 SINE MIR 28 159 -49 304 309 15 66 chr1 18230337 18230473 -224433880 - L1MDa LINE L1 -4384 2156 2028 237 65 0 0 chr1 18230473 18230504 -224433849 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 440 288 124 6 chr1 18230506 18230683 -224433670 - L2 LINE L2 0 3313 3116 785 316 161 16 chr1 18230974 18231644 -224432709 + L2 LINE L2 2273 3043 -229 648 209 7 0 chr1 18231792 18231931 -224432422 - MER3 DNA MER1_type -56 153 14 249 322 35 0 chr1 18231931 18232018 -224432335 + L2 LINE L2 3194 3283 -30 207 296 99 0 chr1 18232405 18232486 -224431867 + MER5A DNA MER1_type 3 91 -98 523 208 152 0 chr1 18232794 18232919 -224431434 - MER7A DNA MER2_type -204 142 1 513 290 35 0 chr1 18232919 18233064 -224431289 - MIR SINE MIR -105 157 8 197 286 0 0 chr1 18234112 18234161 -224430192 + MIR SINE MIR 107 155 -107 2088 99 3 54 chr1 18234563 18234877 -224429476 + AluSx SINE Alu 1 298 -14 276 371 111 19 chr1 18234931 18235246 -224429107 - L2 LINE L2 -1 3271 2928 235 302 23 0 chr1 18236366 18236452 -224427901 + (TG)n Simple_repeat Simple_repeat 2 89 0 495 253 96 6 chr1 18236667 18236845 -224427508 - MER3 DNA MER1_type 0 209 16 296 341 165 6 chr1 18237404 18237574 -224426779 - L2 LINE L2 0 3272 3076 226 321 14 64 chr1 18237978 18238118 -224426235 + MIR SINE MIR 20 152 -56 406 337 72 10 chr1 18238557 18238750 -224425603 - MIR SINE MIR -51 211 7 747 268 145 25 chr1 18238855 18239213 -224425140 - L2 LINE L2 -2 3311 2911 1532 270 168 22 chr1 18239240 18240084 -224424269 - L2 LINE L2 -550 2764 1798 2158 96 17 0 chr1 18240701 18240993 -224423360 - AluSx SINE Alu -15 297 1 640 263 48 0 chr1 18241698 18241884 -224422469 - LTR16C LTR ERVL -22 469 275 1360 216 52 55 chr1 18242175 18242383 -224421970 - MLT1A1 LTR MaLR 0 365 157 2226 100 0 19 chr1 18242383 18242692 -224421661 - AluSx SINE Alu -9 303 1 1360 216 52 55 chr1 18242692 18242849 -224421504 - MLT1A1 LTR MaLR -208 157 1 1889 158 64 25 chr1 18242941 18243118 -224421235 + THE1C LTR MaLR 1 170 -205 2334 76 0 3 chr1 18243118 18243419 -224420934 - AluY SINE Alu -11 300 1 1889 158 64 25 chr1 18243419 18243602 -224420751 + THE1C LTR MaLR 170 375 0 197 333 178 22 chr1 18243659 18243749 -224420604 - L2 LINE L2 -23 3249 3146 353 277 80 0 chr1 18243828 18243965 -224420388 + MIR SINE MIR 34 181 -81 351 105 0 0 chr1 18244166 18244223 -224420130 + (CTGGGG)n Simple_repeat Simple_repeat 1 57 0 1112 164 25 5 chr1 18244618 18244819 -224419534 - AluJo SINE Alu -107 205 1 219 328 0 0 chr1 18245588 18245655 -224418698 + MIR SINE MIR 36 102 -106 468 228 56 3 chr1 18245730 18245892 -224418461 - MIR SINE MIR -62 146 16 409 317 56 0 chr1 18246019 18246161 -224418192 + MIR SINE MIR 111 260 -2 2104 114 7 0 chr1 18246264 18246561 -224417792 - AluSx SINE Alu -12 300 2 360 212 66 73 chr1 18246827 18246964 -224417389 - L2 LINE L2 -4 3268 3133 1777 170 6 3 chr1 18246978 18247313 -224417040 + AluJo SINE Alu 1 336 0 397 307 50 7 chr1 18247407 18247547 -224416806 + MIR SINE MIR 105 250 -12 1987 71 0 8 chr1 18247554 18247844 -224416509 - AluY SINE Alu 0 311 37 522 330 33 14 chr1 18248735 18248790 -224415563 - MIR SINE MIR -15 247 195 2172 162 162 2 chr1 18248790 18249209 -224415144 - LTR19A LTR ERV1 0 486 1 522 330 33 14 chr1 18249209 18249365 -224414988 - MIR SINE MIR -67 195 32 650 259 239 39 chr1 18249738 18250178 -224414175 + MLT1H1 LTR MaLR 4 531 -24 1005 274 65 40 chr1 18250276 18250721 -224413632 + MLT1K LTR MaLR 122 577 -11 449 281 22 15 chr1 18251673 18251808 -224412545 - MIR3 SINE MIR -59 149 14 347 287 11 0 chr1 18251990 18252077 -224412276 + MIR SINE MIR 36 123 -85 346 308 111 34 chr1 18252220 18252275 -224412078 - MIR SINE MIR -13 249 200 2261 103 6 0 chr1 18252275 18252586 -224411767 - AluSq SINE Alu 0 313 1 346 308 111 34 chr1 18252586 18252738 -224411615 - MIR SINE MIR -62 200 26 270 81 0 0 chr1 18253622 18253659 -224410694 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 338 289 0 21 chr1 18253692 18253789 -224410564 - L2 LINE L2 -29 3284 3190 446 270 104 13 chr1 18253913 18254096 -224410257 - MIR SINE MIR -60 202 6 625 261 18 0 chr1 18254509 18254674 -224409679 - MIR SINE MIR -80 182 15 1680 167 0 46 chr1 18254753 18255077 -224409276 + AluJo SINE Alu 1 309 -3 750 104 8 22 chr1 18255318 18255452 -224408901 + (TTCC)n Simple_repeat Simple_repeat 2 133 0 1903 136 30 0 chr1 18255452 18255754 -224408599 - AluSx SINE Alu -1 311 1 250 247 49 49 chr1 18255837 18255918 -224408435 + L2 LINE L2 3137 3217 -55 337 209 7 122 chr1 18256644 18256783 -224407570 - LTR16A1 LTR ERVL -70 387 265 459 339 66 16 chr1 18257095 18257278 -224407075 - MIR SINE MIR -19 243 52 226 185 0 56 chr1 18257335 18257389 -224406964 - L2 LINE L2 -192 3080 3030 204 370 0 0 chr1 18257436 18257517 -224406836 - L2 LINE L2 -2 3311 3231 447 65 0 0 chr1 18257714 18257776 -224406577 + L1PB1 LINE L1 6089 6150 -1 180 0 0 0 chr1 18257808 18257828 -224406525 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 195 308 77 8 chr1 18257887 18258004 -224406349 - MIR SINE MIR -78 184 60 270 322 17 26 chr1 18258356 18258471 -224405882 + MIR SINE MIR 30 143 -65 204 345 12 24 chr1 18258694 18258778 -224405575 + MIR SINE MIR 50 132 -76 245 269 77 58 chr1 18259355 18259511 -224404842 + MIR SINE MIR 21 179 -83 615 261 20 64 chr1 18259802 18260063 -224404290 - MIR SINE MIR -2 260 5 974 255 55 51 chr1 18260149 18260577 -224403776 - MLT1K LTR MaLR -17 571 126 225 290 43 0 chr1 18260678 18260747 -224403606 - MIR SINE MIR -92 170 99 360 324 57 62 chr1 18260894 18260990 -224403363 + L1ME LINE L1 5389 5484 -637 2162 98 0 0 chr1 18260990 18261311 -224403042 + AluSp SINE Alu 1 321 0 360 324 57 62 chr1 18261311 18261565 -224402788 + L1ME LINE L1 5484 5738 -383 659 303 131 0 chr1 18262277 18262498 -224401855 - MIR SINE MIR 0 262 13 350 316 97 0 chr1 18262913 18263068 -224401285 - MIR SINE MIR -42 220 51 2295 101 3 0 chr1 18263280 18263587 -224400766 + AluSq SINE Alu 1 308 -5 409 333 13 7 chr1 18263611 18263761 -224400592 + MIR SINE MIR 3 153 -109 317 263 171 16 chr1 18263819 18264007 -224400346 - MIR SINE MIR -13 249 19 1976 144 0 0 chr1 18264209 18264501 -224399852 - AluSx SINE Alu -20 292 1 290 286 19 38 chr1 18264812 18264917 -224399436 - LTR16C LTR ERVL -2 489 387 2325 186 57 15 chr1 18265255 18265729 -224398624 + LTR42 LTR ERVL 2 495 0 1965 145 0 0 chr1 18265892 18266181 -224398172 - AluSx SINE Alu -23 289 1 1098 80 23 6 chr1 18266265 18266440 -224397913 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 318 50 0 0 chr1 18266443 18266483 -224397870 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 1232 201 43 23 chr1 18266483 18266538 -224397815 - AluJo SINE Alu -2 310 258 2799 79 3 6 chr1 18266538 18266894 -224397459 - THE1A LTR MaLR 0 355 1 1232 201 43 23 chr1 18266894 18267142 -224397211 - AluJo SINE Alu -54 258 1 379 355 28 0 chr1 18267152 18267293 -224397060 - MIR SINE MIR -70 192 48 296 295 20 86 chr1 18267796 18267960 -224396393 - MIR3 SINE MIR -29 179 28 298 276 41 8 chr1 18268450 18268573 -224395780 + MIR3 SINE MIR 70 196 -12 643 313 17 26 chr1 18268847 18269077 -224395276 + MIR SINE MIR 7 234 -28 976 260 75 41 chr1 18269095 18269556 -224394797 + MLT1H LTR MaLR 1 549 0 259 273 52 13 chr1 18269591 18269668 -224394685 + MIR SINE MIR 64 143 -65 390 335 94 0 chr1 18269721 18269912 -224394441 + MIR SINE MIR 33 241 -21 354 194 63 19 chr1 18269912 18270026 -224394327 - MLT1G3 LTR MaLR 0 595 497 539 219 117 63 chr1 18270126 18270354 -224393999 - MLT1G3 LTR MaLR -138 417 149 1944 98 11 0 chr1 18270362 18270626 -224393727 + AluSx SINE Alu 14 280 -32 279 0 0 0 chr1 18270630 18270661 -224393692 + (CA)n Simple_repeat Simple_repeat 2 32 0 1398 65 0 0 chr1 18270662 18270832 -224393521 + AluY SINE Alu 1 170 -141 1511 71 0 38 chr1 18270832 18271044 -224393309 + AluSg/x SINE Alu 107 310 -2 250 246 0 0 chr1 18271138 18271195 -224393158 - MLT1G3 LTR MaLR -459 83 27 265 230 14 54 chr1 18271258 18271332 -224393021 + MIR3 SINE MIR 130 200 -8 453 192 20 20 chr1 18271671 18271770 -224392583 - MIR SINE MIR -136 126 28 399 236 35 37 chr1 18271943 18272086 -224392267 + MIR SINE MIR 15 150 -58 420 316 58 21 chr1 18272828 18273018 -224391335 - MIR SINE MIR -16 246 50 2025 111 0 20 chr1 18273031 18273337 -224391016 + AluSx SINE Alu 13 312 0 404 279 49 0 chr1 18273355 18273477 -224390876 - MIR3 SINE MIR -15 193 66 586 301 78 53 chr1 18274001 18274397 -224389956 + L2 LINE L2 2854 3259 -13 453 367 31 0 chr1 18274803 18275029 -224389324 - MIR SINE MIR -12 250 18 455 352 56 13 chr1 18276059 18276292 -224388061 + MIR SINE MIR 20 262 0 254 243 43 0 chr1 18276331 18276401 -224387952 - MIR SINE MIR -75 133 61 785 158 8 8 chr1 18276401 18276534 -224387819 - AluJo SINE Alu -178 134 2 413 269 0 10 chr1 18276585 18276689 -224387664 + MIR SINE MIR 41 143 -65 279 357 29 14 chr1 18276728 18276868 -224387485 - MIR3 SINE MIR -13 195 54 2300 85 7 0 chr1 18277083 18277388 -224386965 + AluSc SINE Alu 1 307 -2 839 186 114 0 chr1 18277887 18278054 -224386299 - MER5A DNA MER1_type -3 186 1 486 256 85 43 chr1 18278073 18278237 -224386116 - MER5B DNA MER1_type -4 174 4 210 260 104 26 chr1 18278444 18278521 -224385832 - L2 LINE L2 -45 3227 3145 189 0 0 0 chr1 18278904 18278925 -224385428 + (TC)n Simple_repeat Simple_repeat 2 22 0 1795 156 0 7 chr1 18278925 18279214 -224385139 - AluJo SINE Alu -23 289 3 390 74 0 0 chr1 18279808 18279862 -224384491 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 229 276 92 0 chr1 18279887 18279963 -224384390 - L2 LINE L2 -68 3204 3122 203 189 0 0 chr1 18280742 18280779 -224383574 + L3b LINE CR1 1349 1385 -198 2047 123 19 3 chr1 18280779 18281087 -224383266 + AluSq SINE Alu 1 313 0 895 215 56 33 chr1 18281260 18281474 -224382879 - MER58A DNA MER1_type 0 224 6 258 246 0 0 chr1 18281898 18281959 -224382394 + G-rich Low_complexity Low_complexity 4 64 0 389 295 155 36 chr1 18282658 18282851 -224381502 + MIR SINE MIR 6 221 -41 347 273 41 33 chr1 18283017 18283138 -224381215 + L2 LINE L2 3191 3312 -1 438 250 69 0 chr1 18283847 18283963 -224380390 - MIR SINE MIR -79 183 60 257 391 20 20 chr1 18284187 18284338 -224380015 + MIR3 SINE MIR 58 208 0 506 276 59 13 chr1 18284610 18284762 -224379591 + MIR SINE MIR 8 166 -96 3381 71 32 2 chr1 18284762 18285226 -224379127 + LTR8 LTR ERV1 110 587 -104 240 111 0 0 chr1 18285226 18285271 -224379082 + (A)n Simple_repeat Simple_repeat 1 45 0 209 213 115 0 chr1 18285273 18285334 -224379019 + MIR SINE MIR 151 218 -44 1613 160 42 29 chr1 18285412 18285725 -224378628 - MLT1B LTR MaLR -73 317 1 298 289 0 52 chr1 18285725 18285812 -224378541 + Charlie8 DNA MER1_type 191 272 -2145 390 213 138 0 chr1 18285815 18285909 -224378444 + MER81 DNA DNA 1 107 -7 2092 124 7 0 chr1 18285912 18286211 -224378142 - AluSx SINE Alu -8 304 4 277 322 183 0 chr1 18286829 18286944 -224377409 + MIR SINE MIR 28 163 -99 2392 73 0 6 chr1 18287031 18287344 -224377009 - AluY SINE Alu 0 311 1 356 209 0 0 chr1 18287346 18287413 -224376940 - MER5A DNA MER1_type -115 74 8 349 256 6 11 chr1 18287505 18287685 -224376668 + (CAT)n Simple_repeat Simple_repeat 1 179 0 197 207 52 35 chr1 18287737 18287795 -224376558 - MIR SINE MIR -60 148 90 211 299 0 52 chr1 18287831 18287908 -224376445 + MIR3 SINE MIR 11 83 -125 234 211 123 0 chr1 18287928 18287985 -224376368 - MIR3 SINE MIR -28 180 117 612 292 102 38 chr1 18288002 18288141 -224376212 + MIR SINE MIR 1 163 -99 2063 223 70 49 chr1 18288141 18288670 -224375683 + MLT1F LTR MaLR 1 540 -2 612 292 102 38 chr1 18288670 18288766 -224375587 + MIR SINE MIR 163 251 -11 306 50 0 0 chr1 18289051 18289091 -224375262 + (TG)n Simple_repeat Simple_repeat 2 41 0 431 262 48 8 chr1 18289530 18289656 -224374697 - MIR3 SINE MIR -36 172 42 479 294 8 0 chr1 18290253 18290379 -224373974 - MIR SINE MIR -116 146 20 247 387 54 0 chr1 18290404 18290497 -224373856 - L2 LINE L2 -29 3243 3146 244 193 76 109 chr1 18290513 18290632 -224373721 - MLT1I LTR MaLR -17 392 278 432 254 52 46 chr1 18290726 18290899 -224373454 - MLT1H LTR MaLR -328 221 48 585 175 98 28 chr1 18290989 18291132 -224373221 - HsTC2 DNA Tc2 0 1898 1746 706 250 34 0 chr1 18291143 18291319 -224373034 - HsTC2 DNA Tc2 -1715 183 2 516 298 22 57 chr1 18291320 18291469 -224372884 - MIR SINE MIR -12 250 110 2469 183 34 13 chr1 18291469 18291945 -224372408 + MER66B LTR ERV1 1 486 0 516 298 22 57 chr1 18291945 18292023 -224372330 - MIR SINE MIR -152 110 31 378 220 25 59 chr1 18292057 18292175 -224372178 + MIR SINE MIR 113 226 -36 2534 101 25 6 chr1 18292390 18292747 -224371606 - THE1B LTR MaLR 0 364 1 437 141 12 0 chr1 18292804 18292889 -224371464 - L1ME2 LINE L1 0 6164 6079 364 226 0 24 chr1 18293813 18293897 -224370456 - MIR SINE MIR -61 147 66 1611 213 71 42 chr1 18294172 18294474 -224369879 - MLT1C LTR MaLR 0 467 175 2322 112 3 0 chr1 18294474 18294777 -224369576 + AluSg SINE Alu 1 304 -6 2220 138 3 0 chr1 18294781 18295086 -224369267 + AluSx SINE Alu 1 306 -6 1611 213 71 42 chr1 18295086 18295229 -224369124 - MLT1C LTR MaLR -294 173 4 189 328 104 16 chr1 18295229 18295354 -224368999 + MIR SINE MIR 55 190 -72 793 258 10 0 chr1 18295975 18296173 -224368180 + MIR SINE MIR 57 256 -6 2499 57 9 31 chr1 18296176 18296494 -224367859 - AluY SINE Alu 0 311 1 365 245 152 40 chr1 18297429 18297580 -224366773 + MIR SINE MIR 91 258 -4 439 208 17 0 chr1 18297591 18297711 -224366642 + (TGG)n Simple_repeat Simple_repeat 1 122 0 213 39 0 0 chr1 18298456 18298482 -224365871 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 273 283 111 10 chr1 18298487 18298586 -224365767 - L2 LINE L2 -18 3295 3187 608 329 72 30 chr1 18299175 18299660 -224364693 + L2 LINE L2 2764 3272 0 315 203 0 0 chr1 18299660 18299734 -224364619 + (TGGA)n Simple_repeat Simple_repeat 2 75 0 202 293 162 0 chr1 18300309 18300408 -224363945 - MIR SINE MIR -116 146 32 216 280 217 7 chr1 18301542 18301685 -224362668 + MIR3 SINE MIR 27 199 -9 420 231 109 34 chr1 18302398 18302449 -224361904 - MIR SINE MIR 0 262 216 2384 81 5 51 chr1 18302449 18302491 -224361862 - THE1A LTR MaLR 0 355 313 2359 112 0 0 chr1 18302491 18302794 -224361559 + AluSx SINE Alu 1 303 -9 2384 81 5 51 chr1 18302794 18303123 -224361230 - THE1A LTR MaLR -42 313 1 420 231 109 34 chr1 18303123 18303218 -224361135 - MIR SINE MIR -46 216 105 283 237 145 40 chr1 18303337 18303489 -224360864 - L2 LINE L2 -215 3057 2890 302 254 40 92 chr1 18304032 18304205 -224360148 - MIR3 SINE MIR -35 173 10 225 339 0 0 chr1 18304244 18304309 -224360044 + CT-rich Low_complexity Low_complexity 3 67 0 417 255 99 14 chr1 18304955 18305096 -224359257 + MIR SINE MIR 31 183 -79 180 200 0 0 chr1 18305150 18305190 -224359163 + (CTG)n Simple_repeat Simple_repeat 2 41 0 244 340 53 0 chr1 18305232 18305326 -224359027 + L2 LINE L2 3215 3313 0 394 223 58 0 chr1 18305910 18306037 -224358316 - MIR SINE MIR -62 146 48 188 210 32 32 chr1 18306474 18306536 -224357817 + MIR SINE MIR 85 146 -62 1466 256 85 24 chr1 18306548 18307009 -224357344 + MLT1D LTR MaLR 16 504 -1 275 200 0 12 chr1 18307214 18307294 -224357059 + C-rich Low_complexity Low_complexity 4 82 0 430 273 25 0 chr1 18307320 18307441 -224356912 + MER5B DNA MER1_type 1 124 -54 909 232 189 12 chr1 18307442 18307701 -224356652 - AluSp SINE Alu -8 305 1 236 255 0 0 chr1 18307710 18307761 -224356592 + MER5B DNA MER1_type 124 174 -4 1832 266 37 19 chr1 18307838 18308405 -224355948 + MLT1K LTR MaLR 12 588 0 2298 89 0 17 chr1 18308467 18308795 -224355558 + AluSc SINE Alu 1 309 0 227 227 106 0 chr1 18309296 18309362 -224354991 + MIR SINE MIR 53 125 -137 482 269 167 16 chr1 18309381 18309567 -224354786 - MLT1K LTR MaLR -371 217 4 318 50 0 0 chr1 18309650 18309690 -224354663 + (TG)n Simple_repeat Simple_repeat 1 40 0 444 330 25 20 chr1 18310213 18310410 -224353943 + MIR SINE MIR 17 214 -48 468 277 21 50 chr1 18311074 18311215 -224353138 - MIR3 SINE MIR -59 149 13 1377 52 0 0 chr1 18311265 18311439 -224352914 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 12574 194 24 13 chr1 18311479 18315306 -224349047 + L1PA16 LINE L1 2300 6161 -5 2429 125 14 16 chr1 18315314 18315746 -224348607 - L1MB2 LINE L1 -7 6164 5734 523 234 39 0 chr1 18315756 18315884 -224348469 + MIR SINE MIR 53 185 -77 1133 240 33 102 chr1 18315889 18316369 -224347984 + LTR16A1 LTR ERVL 7 453 -4 280 245 10 51 chr1 18316369 18316467 -224347886 - MIR SINE MIR -5 257 164 681 204 84 7 chr1 18316547 18316689 -224347664 + MLT1A2 LTR MaLR 180 332 -42 217 257 162 0 chr1 18316897 18316971 -224347382 + MIR3 SINE MIR 77 162 -46 687 295 5 0 chr1 18316971 18317161 -224347192 + MER117 DNA MER1_type 2 192 -5 968 290 133 19 chr1 18317384 18317805 -224346548 + MLT1K LTR MaLR 76 544 -44 182 303 151 8 chr1 18318172 18318291 -224346062 - MIR3 SINE MIR -69 139 4 185 240 60 0 chr1 18318374 18318424 -224345929 + MIR SINE MIR 201 253 -9 257 330 59 17 chr1 18318447 18318565 -224345788 - LTR16C LTR ERVL 0 491 369 2363 205 14 27 chr1 18318585 18319097 -224345256 + MLT1F LTR MaLR 9 513 -29 233 381 52 6 chr1 18319156 18319329 -224345024 - LTR16C LTR ERVL -193 298 118 228 313 20 0 chr1 18319521 18319620 -224344733 + (TGAG)n Simple_repeat Simple_repeat 1 101 0 782 168 0 7 chr1 18319719 18319856 -224344497 + MLT1F LTR MaLR 299 434 -108 295 296 9 28 chr1 18320401 18320508 -224343845 - MIR SINE MIR -62 146 54 227 309 73 9 chr1 18320640 18320750 -224343603 + MIR3 SINE MIR 45 161 -47 289 289 52 30 chr1 18320864 18320999 -224343354 - MIR SINE MIR -87 175 38 802 303 107 29 chr1 18321145 18321558 -224342795 - MLT1K LTR MaLR -3 585 141 413 228 32 24 chr1 18321642 18321765 -224342588 - MIR SINE MIR -70 192 69 185 333 11 0 chr1 18322079 18322169 -224342184 - L2 LINE L2 -217 3055 2965 671 220 5 70 chr1 18322275 18322475 -224341878 + MIR SINE MIR 52 238 -24 198 268 70 14 chr1 18322592 18322663 -224341690 + MIR SINE MIR 3 77 -185 219 270 16 0 chr1 18322700 18322763 -224341590 + MIR SINE MIR 176 239 -23 331 291 8 26 chr1 18322837 18322954 -224341399 - MLT1K LTR MaLR -392 196 82 828 210 87 10 chr1 18322977 18323172 -224341181 + MER58C DNA MER1_type 6 215 0 865 206 178 52 chr1 18323297 18323685 -224340668 - LTR33A LTR ERVL 0 523 87 883 247 134 21 chr1 18324168 18324541 -224339812 + MER113 DNA MER1_type? 38 452 -69 455 122 100 11 chr1 18324570 18324660 -224339693 + MER4A LTR ERV1 1 98 -566 2235 110 10 3 chr1 18324755 18325056 -224339297 + AluSq SINE Alu 7 309 -4 1215 134 10 29 chr1 18325058 18325313 -224339040 + MER4B LTR ERV1 381 620 -44 1379 95 0 0 chr1 18325313 18325482 -224338871 - AluSc SINE Alu -17 292 124 353 127 0 0 chr1 18325482 18325537 -224338816 + MER4A LTR ERV1 610 664 0 687 292 55 8 chr1 18326139 18326375 -224337978 - MIR SINE MIR -14 248 2 233 250 21 0 chr1 18326987 18327083 -224337270 + CT-rich Low_complexity Low_complexity 4 101 0 986 95 34 14 chr1 18327148 18327295 -224337058 + THE1B LTR MaLR 1 150 -214 721 233 27 0 chr1 18327910 18328060 -224336293 + MIR SINE MIR 88 241 -21 543 305 17 11 chr1 18328292 18328466 -224335887 + MIR SINE MIR 79 253 -9 337 252 114 8 chr1 18328834 18328957 -224335396 - MIR SINE MIR -118 144 9 524 113 31 21 chr1 18329161 18329258 -224335095 + MER4A LTR ERV1 1 98 -566 1764 153 173 9 chr1 18329258 18329605 -224334748 + MER4A LTR ERV1 261 664 0 180 298 0 0 chr1 18329867 18329914 -224334439 - L2 LINE L2 -2885 429 383 455 292 124 26 chr1 18330245 18330478 -224333875 + MIR SINE MIR 7 262 0 1153 270 93 27 chr1 18331854 18332262 -224332091 - LTR16A LTR ERVL 0 450 16 955 243 33 16 chr1 18332674 18332917 -224331436 + MIR SINE MIR 6 252 -10 1830 155 3 44 chr1 18332958 18333274 -224331079 - AluJo SINE Alu -9 303 1 292 271 12 12 chr1 18334497 18334582 -224329771 - MIR SINE MIR -147 115 31 473 244 110 24 chr1 18334609 18334773 -224329580 + MIR3 SINE MIR 20 197 -11 1046 251 154 40 chr1 18335982 18336369 -224327984 + L2 LINE L2 2762 3216 -97 2457 64 0 3 chr1 18336369 18336665 -224327688 - AluY SINE Alu -16 295 1 1046 251 154 40 chr1 18336665 18336776 -224327577 + L2 LINE L2 3216 3313 0 425 339 8 0 chr1 18336955 18337082 -224327271 - L2 LINE L2 -3 3269 3142 444 118 0 0 chr1 18338099 18338167 -224326186 + (TCCA)n Simple_repeat Simple_repeat 2 69 0 375 258 104 108 chr1 18338167 18338435 -224325918 - L2 LINE L2 0 3272 3006 624 228 13 7 chr1 18338567 18338716 -224325637 + MLT1K LTR MaLR 122 271 -317 355 417 25 0 chr1 18338778 18338941 -224325412 + MIR3 SINE MIR 19 185 -23 314 270 90 0 chr1 18339804 18339893 -224324460 - MIR SINE MIR -83 125 29 184 125 0 31 chr1 18340527 18340559 -224323794 + L2 LINE L2 3265 3295 -18 784 235 3 21 chr1 18340772 18340993 -224323360 - MIR SINE MIR 0 262 49 1042 178 0 0 chr1 18342241 18342404 -224321949 - AluJb SINE Alu -1 311 149 280 250 15 0 chr1 18342404 18342472 -224321881 + MIR SINE MIR 160 228 -34 372 339 119 18 chr1 18342641 18342859 -224321494 + MIR SINE MIR 20 259 -3 234 309 43 11 chr1 18343036 18343130 -224321223 + MIR SINE MIR 110 206 -56 207 322 44 11 chr1 18343221 18343311 -224321042 - L2 LINE L2 -19 3294 3202 350 277 27 0 chr1 18343630 18343742 -224320611 - MARNA DNA Mariner -337 249 135 456 255 143 25 chr1 18344394 18344555 -224319798 + MIR SINE MIR 83 262 0 263 309 10 10 chr1 18344710 18344807 -224319546 - L2 LINE L2 -57 3256 3160 582 268 45 17 chr1 18344836 18345015 -224319338 + L2 LINE L2 3130 3313 0 429 243 75 0 chr1 18345405 18345540 -224318813 + MIR SINE MIR 45 189 -64 366 331 30 56 chr1 18345546 18345757 -224318596 + MIR SINE MIR 1 205 -57 2629 89 6 3 chr1 18345757 18346118 -224318235 - THE1B LTR MaLR -2 362 1 366 331 30 56 chr1 18346118 18346175 -224318178 + MIR SINE MIR 205 262 0 180 0 0 0 chr1 18346254 18346274 -224318079 + (TTG)n Simple_repeat Simple_repeat 2 21 0 301 301 0 0 chr1 18346462 18346535 -224317818 - MIR SINE MIR -110 152 80 234 218 45 113 chr1 18346674 18346807 -224317546 - MIR SINE MIR -70 192 69 309 232 30 61 chr1 18347426 18347525 -224316828 + MIR SINE MIR 167 262 0 211 93 0 56 chr1 18347682 18347736 -224316617 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 630 275 135 5 chr1 18348400 18348607 -224315746 - MIR SINE MIR -21 241 8 982 182 0 0 chr1 18348635 18348789 -224315564 + FRAM SINE Alu 5 158 -18 253 232 51 0 chr1 18348904 18348992 -224315361 - MIR SINE MIR -59 149 100 380 219 8 0 chr1 18349499 18349622 -224314731 + CT-rich Low_complexity Low_complexity 3 126 0 618 89 0 0 chr1 18349627 18349717 -224314636 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 286 240 93 156 chr1 18349757 18349830 -224314523 + L2 LINE L2 3103 3179 -134 2060 100 53 47 chr1 18349830 18350014 -224314339 + THE1B LTR MaLR 1 192 -172 2249 108 7 3 chr1 18350014 18350372 -224313981 + AluSp SINE Alu 1 359 0 2060 100 53 47 chr1 18350372 18350543 -224313810 + THE1B LTR MaLR 192 361 -3 455 0 18 0 chr1 18350543 18350598 -224313755 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 286 240 93 156 chr1 18350598 18350748 -224313605 + L2 LINE L2 3177 3313 0 229 294 49 55 chr1 18351032 18351195 -224313158 + L2 LINE L2 2895 3056 -216 2365 110 0 0 chr1 18351383 18351692 -224312661 - AluY SINE Alu -2 309 1 697 276 77 10 chr1 18351744 18351940 -224312413 - MIR SINE MIR -25 237 29 276 355 0 8 chr1 18351954 18352075 -224312278 + MIR3 SINE MIR 82 201 -7 434 273 57 54 chr1 18352267 18352613 -224311740 + MLT1H LTR MaLR 1 379 -170 2286 111 10 0 chr1 18352898 18353195 -224311158 - AluSx SINE Alu -12 300 1 1942 205 101 5 chr1 18353829 18354244 -224310109 - MLT1D LTR MaLR -48 457 3 193 233 17 55 chr1 18354278 18354375 -224309978 - MIR SINE MIR -102 160 32 289 297 103 9 chr1 18354511 18354625 -224309728 - MIR SINE MIR -66 142 40 1621 204 44 42 chr1 18354633 18355089 -224309264 + LTR16A1 LTR ERVL 1 457 0 1703 272 54 33 chr1 18355092 18355736 -224308617 - MLT2F LTR ERVL -2 661 4 6399 270 56 48 chr1 18355738 18358345 -224306008 - ERVL-F LTR ERVL -7 5757 3132 718 337 4 4 chr1 18358350 18358599 -224305754 - ERVL LTR ERVL -4430 1334 1086 281 200 14 0 chr1 18358619 18358690 -224305663 - MLT2E LTR ERVL -548 80 8 588 148 0 0 chr1 18358906 18358994 -224305359 + AluJ/FLAM SINE Alu 6 93 -219 185 0 40 0 chr1 18358997 18359022 -224305331 + (TAA)n Simple_repeat Simple_repeat 2 27 0 377 271 158 0 chr1 18359069 18359230 -224305123 - MIR SINE MIR -44 218 37 1478 223 82 75 chr1 18360092 18360629 -224303724 - L2 LINE L2 0 3313 2781 1853 176 40 0 chr1 18360629 18360925 -224303428 - AluJb SINE Alu -2 310 3 1523 135 0 5 chr1 18360927 18361149 -224303204 - AluJb SINE Alu -11 301 81 1478 223 82 75 chr1 18361149 18361484 -224302869 - L2 LINE L2 -532 2781 2421 462 234 23 99 chr1 18361504 18361675 -224302678 + MIR SINE MIR 61 218 -44 209 32 0 32 chr1 18361684 18361715 -224302638 + (TTA)n Simple_repeat Simple_repeat 2 31 0 306 250 284 23 chr1 18361742 18361793 -224302560 + MER58A DNA MER1_type 3 39 -2381 2624 71 0 0 chr1 18361793 18362101 -224302252 + AluY SINE Alu 1 308 -3 306 250 284 23 chr1 18362101 18362225 -224302128 + MER58A DNA MER1_type 39 224 0 202 323 0 0 chr1 18362905 18362967 -224301386 + L2 LINE L2 3210 3271 -1 296 303 10 0 chr1 18363300 18363399 -224300954 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 1301 115 0 0 chr1 18363704 18363869 -224300484 - AluSc SINE Alu -21 288 124 2266 85 7 3 chr1 18363869 18364162 -224300191 - AluY SINE Alu -17 294 1 244 183 0 28 chr1 18364179 18364250 -224300103 + CT-rich Low_complexity Low_complexity 5 73 0 697 156 0 64 chr1 18364257 18364398 -224299955 - FLAM_C SINE Alu -1 132 1 221 218 41 3 chr1 18364415 18364476 -224299877 + MIR SINE MIR 74 137 -71 600 214 162 7 chr1 18364856 18365010 -224299343 - MER45A DNA AcHobo 0 178 1 694 239 58 5 chr1 18365030 18365267 -224299086 + MIR SINE MIR 14 261 -1 469 337 146 5 chr1 18366208 18366618 -224297735 - L2 LINE L2 -531 2783 2316 839 281 126 17 chr1 18367071 18367540 -224296813 - LTR33 LTR ERVL -1 520 1 2168 108 10 0 chr1 18367587 18367920 -224296433 + AluSx SINE Alu 1 336 0 2343 119 0 0 chr1 18368743 18369053 -224295300 - AluSg SINE Alu 0 310 1 406 273 26 12 chr1 18369265 18369453 -224294900 + MIR SINE MIR 29 259 -3 384 227 62 32 chr1 18369482 18369637 -224294716 - MIR SINE MIR -62 146 16 2152 65 0 129 chr1 18370266 18370606 -224293747 - AluY SINE Alu -15 296 1 473 302 0 44 chr1 18370619 18370801 -224293552 - MIR3 SINE MIR -17 191 18 951 219 68 0 chr1 18370876 18371095 -224293258 - MIR SINE MIR 0 262 29 263 280 83 51 chr1 18371392 18371549 -224292804 + MIR3 SINE MIR 30 191 -17 245 376 30 8 chr1 18372304 18372437 -224291916 + MIR SINE MIR 47 182 -80 1860 148 133 21 chr1 18372625 18373010 -224291343 + MSTA LTR MaLR 1 428 0 302 95 111 32 chr1 18373598 18373661 -224290692 + MADE1 DNA Mariner 9 76 -4 369 344 6 12 chr1 18373690 18373853 -224290500 - MIR3 SINE MIR -7 201 40 198 286 0 0 chr1 18373905 18373954 -224290399 + L2 LINE L2 3186 3234 -38 265 223 32 21 chr1 18374414 18374508 -224289845 + L2 LINE L2 2965 3059 -213 229 315 0 0 chr1 18375093 18375158 -224289195 + MIR SINE MIR 85 143 -65 347 318 68 26 chr1 18375256 18375520 -224288833 + L2 LINE L2 2630 2904 -410 833 284 61 37 chr1 18375681 18376009 -224288344 + MLT1H1 LTR MaLR 37 375 -215 663 230 153 89 chr1 18376200 18376617 -224287736 + MLT1J1 LTR MaLR 3 446 0 410 304 24 8 chr1 18376878 18377003 -224287350 + L2 LINE L2 3143 3269 -3 306 240 53 13 chr1 18377837 18377912 -224286441 - MIR SINE MIR -72 190 113 227 293 146 0 chr1 18378277 18378359 -224285994 + MLT1H1 LTR MaLR 454 547 -2 2323 102 0 3 chr1 18378649 18378944 -224285409 + AluSg1 SINE Alu 1 294 -15 419 216 18 13 chr1 18378959 18379068 -224285285 - MIR3 SINE MIR -48 160 57 1778 141 92 0 chr1 18379106 18379390 -224284963 + AluSg SINE Alu 1 310 0 424 285 20 40 chr1 18379578 18379778 -224284575 + MLT1K LTR MaLR 359 554 -34 268 264 118 27 chr1 18380060 18380170 -224284183 + MIR3 SINE MIR 65 184 -24 296 262 83 60 chr1 18380204 18380372 -224283981 + L2 LINE L2 2920 3091 -181 216 67 0 0 chr1 18381029 18381059 -224283294 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 296 234 31 0 chr1 18381059 18381123 -224283230 - L2 LINE L2 0 3313 3248 329 298 32 16 chr1 18381151 18381275 -224283078 - MIR SINE MIR -135 127 2 189 232 0 0 chr1 18381380 18381449 -224282904 + (TTCA)n Simple_repeat Simple_repeat 1 69 0 660 283 95 68 chr1 18382287 18382622 -224281731 - Charlie8 DNA MER1_type -1925 492 141 2006 156 0 0 chr1 18382622 18382642 -224281711 - AluJb SINE Alu -5 307 288 665 24 12 0 chr1 18382642 18382725 -224281628 + (TTATA)n Simple_repeat Simple_repeat 4 87 0 2006 156 0 0 chr1 18382725 18383011 -224281342 - AluJb SINE Alu -23 289 1 660 283 95 68 chr1 18383011 18383116 -224281237 - Charlie8 DNA MER1_type -2276 141 40 841 283 74 14 chr1 18383277 18383627 -224280726 - MLT1H LTR MaLR -178 371 1 239 291 25 25 chr1 18383633 18383712 -224280641 + MIR3 SINE MIR 90 168 -40 698 103 16 0 chr1 18384158 18384284 -224280069 + (TCCA)n Simple_repeat Simple_repeat 3 130 0 2509 80 0 0 chr1 18384288 18384589 -224279764 - AluY SINE Alu -10 301 1 181 301 72 78 chr1 18386421 18386511 -224277842 + MIR SINE MIR 27 117 -145 1634 161 45 0 chr1 18386511 18386678 -224277675 - AluJo SINE Alu -13 299 112 288 0 0 0 chr1 18386678 18386710 -224277643 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1634 161 45 0 chr1 18386710 18386828 -224277525 - AluJo SINE Alu -200 112 1 181 301 72 78 chr1 18386828 18386890 -224277463 + MIR SINE MIR 117 178 -84 358 299 41 0 chr1 18386902 18386999 -224277354 - MER91C DNA MER1_type -39 101 1 522 263 18 23 chr1 18387152 18387323 -224277030 + MIR SINE MIR 87 256 -6 390 74 0 0 chr1 18388569 18388623 -224275730 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 222 276 92 0 chr1 18388648 18388724 -224275629 - L2 LINE L2 -68 3204 3122 205 189 0 0 chr1 18389503 18389540 -224274813 + L3b LINE CR1 1349 1385 -198 2057 133 20 3 chr1 18389540 18389841 -224274512 + AluSx SINE Alu 1 306 -6 2200 141 3 0 chr1 18389845 18390150 -224274203 + AluSx SINE Alu 1 306 -6 600 183 127 0 chr1 18390151 18390293 -224274060 - MLT1C LTR MaLR -304 163 4 189 328 104 16 chr1 18390293 18390418 -224273935 + MIR SINE MIR 55 190 -72 225 355 10 0 chr1 18391038 18391235 -224273118 + MIR SINE MIR 57 255 -7 1672 133 0 35 chr1 18391421 18391676 -224272677 - AluSx SINE Alu -66 246 1 710 259 101 20 chr1 18392329 18392576 -224271777 + L2 LINE L2 3046 3312 -1 500 274 101 6 chr1 18392543 18392711 -224271642 - MIR SINE MIR -50 212 29 * 21 0 0 0 chr1 18393015 18393036 -224271317 + AT_rich Low_complexity Low_complexity 1 21 0 369 345 17 17 chr1 18393099 18393218 -224271135 + MIR SINE MIR 24 142 -120 949 271 155 8 chr1 18393237 18393599 -224270754 + MLT1J LTR MaLR 19 433 -78 344 274 43 34 chr1 18394438 18394555 -224269798 - MIR3 SINE MIR -20 188 71 2160 116 10 26 chr1 18394688 18394991 -224269362 + AluSq SINE Alu 3 300 -13 750 268 106 0 chr1 18395135 18395333 -224269020 + MIR SINE MIR 43 261 -1 521 172 124 2 chr1 18395479 18395627 -224268726 - MLT1J2 LTR MaLR -239 211 38 252 292 163 11 chr1 18395655 18395833 -224268520 + MIR SINE MIR 48 252 -10 271 250 22 22 chr1 18395834 18395926 -224268427 + CT-rich Low_complexity Low_complexity 5 96 0 590 308 54 13 chr1 18396451 18396675 -224267678 - MIR SINE MIR -2 260 28 238 252 26 35 chr1 18396717 18396832 -224267521 + L2 LINE L2 2917 3030 -242 757 171 11 0 chr1 18397108 18397283 -224267070 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 1946 133 35 11 chr1 18397323 18397670 -224266683 + L1MB3 LINE L1 5827 6181 -2 702 261 55 10 chr1 18397920 18398119 -224266234 - MIR SINE MIR -45 217 10 695 172 71 12 chr1 18398294 18398463 -224265890 + MER96B DNA MER1_type? 1 179 -238 539 309 20 20 chr1 18398636 18398840 -224265513 + MIR SINE MIR 21 224 -38 216 309 30 53 chr1 18399720 18399876 -224264477 - MIR SINE MIR -72 190 40 307 365 30 12 chr1 18400093 18400260 -224264093 - MIR3 SINE MIR -3 205 36 211 264 72 50 chr1 18400283 18400452 -224263901 + MIR SINE MIR 33 206 -56 531 292 57 83 chr1 18400591 18400892 -224263461 + L2 LINE L2 2966 3258 -14 259 293 136 14 chr1 18401953 18402100 -224262253 + MLT1H LTR MaLR 372 536 -13 181 267 67 0 chr1 18402173 18402233 -224262120 + MIR SINE MIR 29 92 -116 187 311 22 11 chr1 18402435 18402525 -224261828 - MIR SINE MIR -2 260 170 482 177 53 18 chr1 18402532 18402645 -224261708 + L2 LINE L2 3192 3308 -5 1052 172 49 5 chr1 18402756 18402959 -224261394 + MER20 DNA MER1_type 8 219 0 1144 237 108 45 chr1 18403035 18403242 -224261111 - MLT1D LTR MaLR 0 505 313 2119 118 36 36 chr1 18403242 18403606 -224260747 - THE1B LTR MaLR 0 364 1 1144 237 108 45 chr1 18403606 18403870 -224260483 - MLT1D LTR MaLR -192 313 4 234 289 67 0 chr1 18403925 18404015 -224260338 - MIR SINE MIR -77 185 90 448 213 5 122 chr1 18404625 18404644 -224259709 - L1MA10 LINE L1 0 6334 6316 3283 221 21 53 chr1 18404644 18405245 -224259108 - L1ME1 LINE L1 -10 6225 5679 1718 159 63 30 chr1 18405245 18405546 -224258807 + AluJo SINE Alu 2 312 0 3283 221 21 53 chr1 18405546 18406086 -224258267 - L1ME1 LINE L1 -556 5679 5123 866 248 10 0 chr1 18406070 18406268 -224258085 - L1ME1 LINE L1 -6153 243 44 * 301 331 12 60 chr1 18406370 18406536 -224257817 - MIR SINE MIR -82 180 23 376 147 15 0 chr1 18407069 18407137 -224257216 + L1MA5A LINE L1 5883 5951 -346 233 163 23 0 chr1 18407168 18407211 -224257142 - MER117 DNA MER1_type -144 53 10 732 374 108 18 chr1 18407236 18407864 -224256489 - L3 LINE CR1 -96 1481 797 712 262 144 0 chr1 18407946 18408175 -224256178 - MIR SINE MIR 0 262 1 705 249 226 24 chr1 18408620 18409041 -224255312 + MLT1K LTR MaLR 76 581 -7 269 278 69 0 chr1 18409148 18409220 -224255133 - L2 LINE L2 -47 3225 3149 578 192 54 129 chr1 18409427 18409651 -224254702 + MIR SINE MIR 43 249 -13 318 280 9 9 chr1 18410544 18410651 -224253702 + (CTCA)n Simple_repeat Simple_repeat 2 108 0 1625 141 65 73 chr1 18411112 18411453 -224252900 + THE1C LTR MaLR 3 340 -35 1808 157 64 0 chr1 18411459 18411740 -224252613 - AluSx SINE Alu -13 299 1 1653 177 63 46 chr1 18412104 18412561 -224251792 - MLT1C LTR MaLR -2 465 1 2671 88 8 8 chr1 18413253 18413627 -224250726 - THE1C LTR MaLR 0 375 2 213 336 55 31 chr1 18414101 18414229 -224250124 + L2 LINE L2 3138 3268 -4 1878 149 0 3 chr1 18414248 18414560 -224249793 + AluSx SINE Alu 3 313 0 1401 139 48 0 chr1 18414903 18415111 -224249242 - AluJo SINE Alu -10 302 85 206 297 0 31 chr1 18415216 18415280 -224249073 - L2 LINE L2 -4 3309 3248 327 259 53 46 chr1 18415318 18415449 -224248904 - L1ME4a LINE L1 -130 5991 5860 311 314 57 8 chr1 18415450 18415574 -224248779 - MIR SINE MIR -62 200 71 230 359 69 0 chr1 18415664 18415795 -224248558 + MIR SINE MIR 108 247 -15 524 241 183 0 chr1 18416052 18416243 -224248110 + MIR SINE MIR 16 241 -21 1279 140 30 47 chr1 18416631 18416944 -224247409 - L1MB8 LINE L1 -13 6167 5858 274 239 172 30 chr1 18416971 18417105 -224247248 - MIR3 SINE MIR -37 171 19 201 163 0 0 chr1 18417199 18417248 -224247105 + CT-rich Low_complexity Low_complexity 2 50 0 368 295 192 29 chr1 18417262 18417642 -224246711 - L2 LINE L2 -37 3276 2835 2130 114 0 0 chr1 18417845 18418162 -224246191 + AluSx SINE Alu 1 317 0 609 337 36 4 chr1 18418827 18419076 -224245277 - MIR SINE MIR 0 262 6 2061 124 3 51 chr1 18419187 18419502 -224244851 + AluSx SINE Alu 1 300 -12 496 315 27 0 chr1 18420530 18420679 -224243674 - MIR SINE MIR -98 164 12 236 378 66 20 chr1 18420914 18421065 -224243288 - L2 LINE L2 0 3272 3115 246 231 0 0 chr1 18421773 18421825 -224242528 - L2 LINE L2 -344 2969 2918 277 284 39 0 chr1 18421865 18421967 -224242386 + MLT1I LTR MaLR 16 121 -288 350 255 3 24 chr1 18422098 18422195 -224242158 + MLT1H LTR MaLR 454 538 -11 199 371 19 9 chr1 18422249 18422354 -224241999 - L2 LINE L2 -433 2881 2776 243 257 86 19 chr1 18422361 18422466 -224241887 - MIR SINE MIR -63 145 34 224 318 35 0 chr1 18422573 18422658 -224241695 - MIR3 SINE MIR -48 160 73 496 320 115 35 chr1 18423257 18423623 -224240730 + MLT1I LTR MaLR 13 407 -2 230 250 42 0 chr1 18423640 18423712 -224240641 - MER103 DNA DNA -21 145 71 300 357 24 8 chr1 18423724 18423850 -224240503 + L1M4 LINE L1 3073 3200 -2946 264 115 16 33 chr1 18423851 18423912 -224240441 + (GAAAA)n Simple_repeat Simple_repeat 4 63 0 182 356 93 0 chr1 18424144 18424262 -224240091 + MIR3 SINE MIR 2 130 -78 1980 107 6 89 chr1 18425131 18425549 -224238804 + AluJb SINE Alu 1 390 0 402 140 11 32 chr1 18425981 18426074 -224238279 + GA-rich Low_complexity Low_complexity 2 92 0 286 274 39 78 chr1 18427215 18427368 -224236985 - MLT1K LTR MaLR -10 578 432 1088 280 68 38 chr1 18427421 18427821 -224236532 - MLT1K LTR MaLR -157 431 20 294 314 12 0 chr1 18428118 18428204 -224236149 + L2 LINE L2 3187 3273 -40 2550 61 0 0 chr1 18428261 18428588 -224235765 + L1PA6 LINE L1 5821 6147 -7 598 350 74 24 chr1 18428662 18429082 -224235271 - L3 LINE CR1 -295 1282 842 589 242 52 69 chr1 18429157 18429219 -224235134 - MIR SINE MIR -16 246 184 2058 120 76 3 chr1 18429219 18429510 -224234843 - AluSp SINE Alu -1 312 1 589 242 52 69 chr1 18429510 18429678 -224234675 - MIR SINE MIR -78 184 20 345 280 87 0 chr1 18430644 18430821 -224233532 + MIR SINE MIR 31 225 -37 324 261 54 9 chr1 18430875 18430986 -224233367 - MIR SINE MIR -119 143 28 458 324 54 51 chr1 18431569 18431839 -224232514 + L2 LINE L2 2952 3225 -88 2644 88 0 24 chr1 18431839 18432212 -224232141 - THE1B LTR MaLR 0 364 1 458 324 54 51 chr1 18432212 18432293 -224232060 + L2 LINE L2 3225 3304 -9 282 282 8 26 chr1 18433695 18433812 -224230541 + (ATGGTG)n Simple_repeat Simple_repeat 1 115 0 327 301 80 88 chr1 18434261 18434510 -224229843 + L2 LINE L2 3008 3254 -18 1675 176 24 40 chr1 18434558 18434934 -224229419 - MLT1A2 LTR MaLR -1 373 4 407 279 91 19 chr1 18435450 18435604 -224228749 - L2 LINE L2 0 3272 3108 333 259 288 0 chr1 18435678 18435817 -224228536 + MIR SINE MIR 7 185 -77 2192 136 0 25 chr1 18435835 18436151 -224228202 + AluSx SINE Alu 1 308 -4 186 219 0 24 chr1 18436433 18436474 -224227879 + L2 LINE L2 3136 3175 -97 255 182 18 0 chr1 18437024 18437079 -224227274 + MIR SINE MIR 82 137 -71 238 36 0 0 chr1 18437573 18437601 -224226752 + (TC)n Simple_repeat Simple_repeat 1 28 0 885 173 3 10 chr1 18437601 18437890 -224226463 + CT-rich Low_complexity Low_complexity 1 287 0 360 0 0 0 chr1 18437893 18437933 -224226420 + (CA)n Simple_repeat Simple_repeat 2 41 0 480 274 76 83 chr1 18438046 18438455 -224225898 + MLT1I LTR MaLR 3 408 -1 544 332 58 5 chr1 18439554 18439777 -224224576 - MIR SINE MIR -21 241 7 256 355 99 0 chr1 18439786 18439927 -224224426 - MIR3 SINE MIR -27 181 27 180 0 0 0 chr1 18440428 18440448 -224223905 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1391 102 4 59 chr1 18440448 18440494 -224223859 + L1PB1 LINE L1 5928 5975 -176 1924 84 114 0 chr1 18440494 18440757 -224223596 + AluSg SINE Alu 1 293 -17 1391 102 4 59 chr1 18440757 18440946 -224223407 + L1PB1 LINE L1 5975 6150 -1 2205 145 80 10 chr1 18441415 18441815 -224222538 - MSTA LTR MaLR 0 428 1 477 256 267 11 chr1 18442184 18442375 -224221978 - MIR SINE MIR -1 261 22 699 323 15 37 chr1 18442450 18442778 -224221575 - L3 LINE CR1 -79 1498 1178 321 343 42 55 chr1 18442788 18443024 -224221329 - L1ME3 LINE L1 -2 6160 5928 1060 276 49 38 chr1 18443039 18443484 -224220869 - L1ME3A LINE L1 -208 5962 5513 2195 99 7 40 chr1 18443516 18443818 -224220535 - AluSq SINE Alu -21 292 1 231 286 40 56 chr1 18444165 18444291 -224220062 + MLT1H LTR MaLR 51 174 -375 230 321 64 21 chr1 18444364 18444504 -224219849 + MLT1H LTR MaLR 403 548 -1 484 310 13 7 chr1 18444565 18444720 -224219633 - MIR SINE MIR -85 177 22 381 319 42 24 chr1 18445002 18445231 -224219122 + MIR SINE MIR 27 261 -1 2451 84 7 0 chr1 18447131 18447430 -224216923 + AluSq SINE Alu 3 303 -10 284 295 58 87 chr1 18447793 18448000 -224216353 - MIR SINE MIR -60 202 2 293 292 18 35 chr1 18448618 18448731 -224215622 - MIR SINE MIR -63 145 35 245 246 0 0 chr1 18449010 18449067 -224215286 - MIR SINE MIR -7 255 199 295 370 46 27 chr1 18450147 18450366 -224213987 + L2 LINE L2 2866 3088 -184 186 333 36 24 chr1 18450447 18450531 -224213822 - L2 LINE L2 -27 3245 3161 195 194 0 0 chr1 18450897 18450933 -224213420 + MIR SINE MIR 111 146 -116 698 314 30 11 chr1 18451261 18451396 -224212957 - L2 LINE L2 0 3313 3182 948 63 14 7 chr1 18451396 18451538 -224212815 + (TCTA)n Simple_repeat Simple_repeat 1 143 0 698 314 30 11 chr1 18451538 18451673 -224212680 - L2 LINE L2 -131 3182 3038 456 182 10 10 chr1 18451672 18451771 -224212582 - MIR SINE MIR -62 200 102 * 251 305 0 12 chr1 18452436 18452518 -224211835 - MIR SINE MIR 0 262 182 679 229 179 15 chr1 18452549 18452750 -224211603 + MIR SINE MIR 29 262 0 746 283 118 25 chr1 18452806 18453212 -224211141 - L2 LINE L2 -3 3310 2867 241 340 132 6 chr1 18453708 18453867 -224210486 - MIR SINE MIR -14 248 70 294 290 56 19 chr1 18454302 18454409 -224209944 + L2 LINE L2 3197 3307 -6 711 282 57 40 chr1 18454410 18454475 -224209878 - MIR SINE MIR 0 262 200 486 281 11 28 chr1 18454475 18454653 -224209700 - MER5B DNA MER1_type -2 176 2 711 282 57 40 chr1 18454653 18454814 -224209539 - MIR SINE MIR -62 200 32 381 43 0 0 chr1 18455267 18455314 -224209039 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 278 310 50 0 chr1 18456040 18456140 -224208213 + MIR SINE MIR 30 134 -128 221 239 0 45 chr1 18456307 18456374 -224207979 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 684 191 0 0 chr1 18556960 18557133 -224107220 + (CCA)n Simple_repeat Simple_repeat 1 173 0 181 237 0 21 chr1 18557160 18557253 -224107100 + (CCA)n Simple_repeat Simple_repeat 1 91 0 406 252 81 0 chr1 18557296 18557407 -224106946 - MIR SINE MIR -26 236 117 450 157 0 0 chr1 18559123 18559206 -224105147 + (CACCAT)n Simple_repeat Simple_repeat 4 86 0 688 139 23 17 chr1 18559221 18559394 -224104959 + (CACCAT)n Simple_repeat Simple_repeat 3 176 0 860 127 7 45 chr1 18559409 18559982 -224104371 + (CACCAT)n Simple_repeat Simple_repeat 1 551 0 870 182 0 0 chr1 18560006 18560364 -224103989 + (CCA)n Simple_repeat Simple_repeat 1 358 0 954 101 0 43 chr1 18560372 18560560 -224103793 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 857 145 17 0 chr1 18560594 18560766 -224103587 + (CACCAT)n Simple_repeat Simple_repeat 5 179 0 227 364 18 9 chr1 18561283 18561393 -224102960 + MIR SINE MIR 74 184 -78 681 328 21 12 chr1 18561516 18561757 -224102596 - MIR SINE MIR 0 262 20 206 267 13 13 chr1 18562875 18562950 -224101403 + (CCCA)n Simple_repeat Simple_repeat 2 76 0 198 233 0 0 chr1 18563007 18563067 -224101286 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 495 48 0 0 chr1 18563144 18563206 -224101147 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 190 238 0 131 chr1 18563345 18563429 -224100924 - L2 LINE L2 -184 3088 3016 196 365 14 0 chr1 18563507 18563581 -224100772 - L2 LINE L2 -64 3208 3134 194 276 171 16 chr1 18563902 18564025 -224100328 + MIR3 SINE MIR 7 148 -60 1131 151 33 5 chr1 18564789 18565001 -224099352 + MER20 DNA MER1_type 1 218 -1 325 332 112 31 chr1 18565894 18566180 -224098173 - L2 LINE L2 0 3313 3005 2452 68 3 16 chr1 18567290 18567600 -224096753 + AluY SINE Alu 1 306 -5 186 327 0 37 chr1 18568705 18568812 -224095541 - MIR SINE MIR -54 208 106 387 133 214 127 chr1 18569573 18569746 -224094607 + MER53 DNA DNA 2 189 0 1992 127 25 32 chr1 18569802 18570116 -224094237 + AluSx SINE Alu 1 312 0 264 154 15 31 chr1 18570125 18570190 -224094163 + T-rich Low_complexity Low_complexity 2 65 0 246 164 0 0 chr1 18570392 18570447 -224093906 + CT-rich Low_complexity Low_complexity 1 55 0 276 273 0 39 chr1 18570484 18570561 -224093792 - L2 LINE L2 -6 3307 3234 380 319 14 7 chr1 18570691 18570835 -224093518 - MIR3 SINE MIR -48 160 16 308 155 0 17 chr1 18572354 18572412 -224091941 + MIR SINE MIR 76 132 -76 429 339 18 12 chr1 18573662 18573830 -224090523 - L3 LINE CR1 -114 1463 1295 365 321 0 0 chr1 18573913 18574022 -224090331 - MER81 DNA DNA -5 109 1 209 231 15 46 chr1 18574209 18574274 -224090079 + MIR SINE MIR 36 98 -164 560 264 71 30 chr1 18574451 18574470 -224089883 + MIR SINE MIR 46 63 -199 1930 124 16 72 chr1 18574470 18574856 -224089497 - THE1B LTR MaLR 0 364 1 560 264 71 30 chr1 18574856 18575033 -224089320 + MIR SINE MIR 63 250 -12 2229 107 17 0 chr1 18575543 18575834 -224088519 - AluSx SINE Alu -6 306 11 576 0 0 0 chr1 18575835 18575899 -224088454 + (TTTCC)n Simple_repeat Simple_repeat 1 64 0 859 54 20 34 chr1 18575900 18576049 -224088304 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 216 260 0 65 chr1 18576431 18576508 -224087845 + MIR SINE MIR 46 117 -91 214 320 27 27 chr1 18576627 18576702 -224087651 - L2 LINE L2 -48 3224 3150 945 204 87 0 chr1 18576967 18577173 -224087180 + MER58A DNA MER1_type 1 224 0 2150 139 13 3 chr1 18577249 18577558 -224086795 + AluSx SINE Alu 1 312 0 506 285 15 0 chr1 18577560 18577697 -224086656 - MER45A DNA AcHobo -7 171 33 322 304 43 43 chr1 18578353 18578583 -224085770 + LTR33 LTR ERVL 292 521 0 910 272 104 39 chr1 18578695 18579129 -224085224 - MLT1H1 LTR MaLR -93 462 1 229 298 113 24 chr1 18579529 18579653 -224084700 + MIR3 SINE MIR 12 146 -62 198 271 168 9 chr1 18579678 18579785 -224084568 + MIR SINE MIR 23 146 -62 272 254 0 0 chr1 18579939 18579998 -224084355 + L2 LINE L2 3206 3264 -8 1493 255 33 43 chr1 18580029 18580538 -224083815 + L1ME2 LINE L1 5651 6154 -10 360 0 0 0 chr1 18580708 18580748 -224083605 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2286 94 0 3 chr1 18580750 18581037 -224083316 - AluSx SINE Alu -26 286 1 21 57 0 0 chr1 18581045 18581080 -224083273 + AT_rich Low_complexity Low_complexity 1 35 0 393 272 103 46 chr1 18581151 18581279 -224083074 + MIR SINE MIR 7 151 -111 1643 174 43 46 chr1 18581279 18581670 -224082683 + MLT1B LTR MaLR 1 390 0 393 272 103 46 chr1 18581670 18581736 -224082617 + MIR SINE MIR 151 212 -50 670 277 106 39 chr1 18581819 18582339 -224082014 - MLT1L LTR MaLR -31 584 6 378 320 193 0 chr1 18582365 18582562 -224081791 - MIR SINE MIR -24 238 4 977 270 8 15 chr1 18583304 18583563 -224080790 + MIR SINE MIR 6 262 0 281 299 0 0 chr1 18583563 18583630 -224080723 + MER5A DNA MER1_type 91 157 -32 230 0 33 0 chr1 18584606 18584636 -224079717 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 735 299 62 54 chr1 18584948 18585336 -224079017 + MLT1I LTR MaLR 19 409 0 6652 57 9 0 chr1 18585563 18586861 -224077492 - L1PA8 LINE L1 -16 6156 4863 1042 125 16 52 chr1 18587155 18587347 -224077006 + MLT2C2 LTR ERVL 1 185 -279 303 241 111 9 chr1 18587435 18587543 -224076810 + MLT1J2 LTR MaLR 294 412 -38 * 744 142 55 119 chr1 18587540 18587583 -224076770 + MLT2C1 LTR ERVL 183 227 -170 2251 131 3 0 chr1 18587583 18587889 -224076464 + AluSx SINE Alu 1 307 -5 744 142 55 119 chr1 18587889 18588064 -224076289 + MLT2C1 LTR ERVL 227 387 -10 362 208 0 14 chr1 18588122 18588194 -224076159 + MER117 DNA MER1_type 38 108 -89 358 312 8 48 chr1 18588208 18588333 -224076020 + L2 LINE L2 3194 3313 0 288 258 73 73 chr1 18588388 18588512 -224075841 - MIR SINE MIR -63 145 22 221 246 15 15 chr1 18588970 18589035 -224075318 + L2 LINE L2 3248 3312 -1 332 344 89 11 chr1 18589344 18589524 -224074829 + MIR SINE MIR 50 243 -19 683 224 6 0 chr1 18589987 18590161 -224074192 + (TG)n Simple_repeat Simple_repeat 2 176 0 213 39 0 0 chr1 18590459 18590485 -224073868 + (CA)n Simple_repeat Simple_repeat 1 26 0 422 306 65 52 chr1 18591144 18591376 -224072977 - L2 LINE L2 -38 3234 3000 472 282 129 6 chr1 18591392 18591562 -224072791 - MIR SINE MIR -1 261 71 315 308 15 53 chr1 18592112 18592184 -224072169 + MIR SINE MIR 26 92 -170 2083 116 99 42 chr1 18592184 18592589 -224071764 - MSTA LTR MaLR 0 428 1 315 308 15 53 chr1 18592589 18592649 -224071704 + MIR SINE MIR 92 153 -109 278 288 105 27 chr1 18592972 18593191 -224071162 + MLT1K LTR MaLR 335 570 -18 717 302 46 62 chr1 18593496 18593626 -224070727 - L2 LINE L2 -452 2862 2731 1975 166 3 0 chr1 18593626 18593928 -224070425 - AluSx SINE Alu -9 303 1 717 302 46 62 chr1 18593928 18594042 -224070311 - L2 LINE L2 -583 2731 2617 3189 178 2 2 chr1 18594042 18594599 -224069754 + MER41D LTR ERV1 1 557 0 717 302 46 62 chr1 18594599 18594849 -224069504 - L2 LINE L2 -697 2617 2375 1632 166 0 68 chr1 18594970 18595278 -224069075 - AluJb SINE Alu -25 287 1 396 0 0 0 chr1 18595837 18595881 -224068472 + (CA)n Simple_repeat Simple_repeat 2 45 0 421 303 151 0 chr1 18596033 18596185 -224068168 - MER96 DNA MER1_type? 0 175 1 210 346 37 37 chr1 18596269 18596350 -224068003 + MIR SINE MIR 107 187 -75 521 221 10 0 chr1 18596393 18596497 -224067856 - MIR SINE MIR -109 153 49 1788 190 52 24 chr1 18596680 18597049 -224067304 - MER74A LTR ERVL -9 549 171 192 171 98 0 chr1 18597123 18597164 -224067189 - MIR SINE MIR -6 256 212 673 142 122 40 chr1 18597200 18597348 -224067005 - MER74B LTR ERVL -407 215 56 793 274 34 0 chr1 18597632 18597836 -224066517 + MIR SINE MIR 2 212 -50 207 188 0 0 chr1 18598603 18598651 -224065702 + (CA)n Simple_repeat Simple_repeat 2 49 0 341 343 107 21 chr1 18598651 18598940 -224065413 - L1MC4a LINE L1 -1880 5928 5615 234 0 0 0 chr1 18598947 18598973 -224065380 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 227 347 0 0 chr1 18598975 18599047 -224065306 - L2 LINE L2 -16 3297 3226 329 358 51 28 chr1 18599100 18599276 -224065077 - L1MC4a LINE L1 -2211 5597 5418 381 311 34 34 chr1 18599378 18599526 -224064827 - MIR SINE MIR -102 160 13 2422 93 0 0 chr1 18599530 18599832 -224064521 + AluSg SINE Alu 3 304 -6 272 296 61 8 chr1 18599987 18600119 -224064234 + MIR SINE MIR 119 257 -5 1691 189 3 20 chr1 18600136 18600468 -224063885 + AluJo SINE Alu 3 312 0 222 217 116 78 chr1 18601265 18601394 -224062959 - L2 LINE L2 -880 2434 2301 2167 126 10 0 chr1 18601472 18601766 -224062587 - AluSx SINE Alu -15 297 1 207 250 0 0 chr1 18602366 18602410 -224061943 + MIR SINE MIR 115 158 -104 706 241 6 6 chr1 18602410 18602572 -224061781 - MLT1G LTR MaLR 0 590 429 * 1140 247 48 24 chr1 18602571 18602863 -224061490 - MLT1G LTR MaLR -274 316 18 848 188 6 24 chr1 18602863 18603028 -224061325 - AluJb SINE Alu -13 299 138 500 262 9 0 chr1 18603057 18603164 -224061189 + MIR SINE MIR 155 262 0 2143 126 7 10 chr1 18603872 18604173 -224060180 - AluSx SINE Alu -12 300 1 2587 80 20 6 chr1 18604196 18604546 -224059807 - THE1A LTR MaLR 0 355 1 219 200 0 0 chr1 18604596 18604636 -224059717 + MER5A DNA MER1_type 47 86 -103 356 230 86 115 chr1 18605331 18605505 -224058848 + MIR SINE MIR 13 181 -81 744 271 47 20 chr1 18605752 18606007 -224058346 + MIR SINE MIR 1 262 0 1441 132 0 64 chr1 18606256 18606516 -224057837 + AluJb SINE Alu 65 309 0 2117 135 0 3 chr1 18606525 18606822 -224057531 + AluSg SINE Alu 9 304 -6 306 214 0 14 chr1 18606833 18606903 -224057450 + L1MB7 LINE L1 6107 6175 -9 2181 231 89 8 chr1 18607012 18607608 -224056745 - LTR48B LTR ERV1 0 644 1 440 266 27 76 chr1 18607776 18607960 -224056393 - LTR48B-int LTR ERV1 -221 4715 4541 * 16314 164 72 80 chr1 18607939 18609296 -224055057 - LTR49-int LTR ERV1 -531 5800 4433 942 48 96 0 chr1 18609296 18609421 -224054932 - MER85 DNA T2_type -2 137 1 16314 164 72 80 chr1 18609421 18609960 -224054393 - LTR49-int LTR ERV1 -1898 4433 3891 1709 194 3 3 chr1 18609960 18610248 -224054105 + AluJo SINE Alu 1 288 -24 16314 164 72 80 chr1 18610248 18611336 -224053017 - LTR49-int LTR ERV1 -2440 3891 2795 185 237 17 34 chr1 18611336 18611395 -224052958 - L3 LINE CR1 -276 1301 1244 16314 164 72 80 chr1 18611395 18611536 -224052817 - LTR49-int LTR ERV1 -3536 2795 2654 1797 183 0 10 chr1 18611536 18611826 -224052527 - AluJb SINE Alu -20 292 6 16314 164 72 80 chr1 18611826 18613107 -224051246 - LTR49-int LTR ERV1 -3677 2654 1372 519 118 0 11 chr1 18613222 18613315 -224051038 - MER41B-int LTR ERV1 -4941 1390 1299 * 692 68 0 0 chr1 18613314 18613402 -224050951 - MER41B-int LTR ERV1 -5402 929 842 3403 121 19 45 chr1 18613445 18613977 -224050376 - MER4B LTR ERV1 -8 602 87 2240 134 0 0 chr1 18613977 18614284 -224050069 - AluSx SINE Alu -5 307 1 3403 121 19 45 chr1 18614284 18614369 -224049984 - MER4B LTR ERV1 -523 87 1 2903 149 25 36 chr1 18614370 18614937 -224049416 - MER41B-int LTR ERV1 -4465 1481 909 2835 135 61 122 chr1 18614937 18615612 -224048741 - MER41B LTR ERV1 0 635 2 2903 149 25 36 chr1 18615612 18616016 -224048337 - MER41B-int LTR ERV1 -5037 909 1 2006 224 93 7 chr1 18616021 18616579 -224047774 - LTR48B LTR ERV1 -17 627 22 2159 108 27 7 chr1 18616580 18616875 -224047478 + AluSx SINE Alu 1 301 -11 956 171 0 0 chr1 18616875 18617050 -224047303 + AluSg/x SINE Alu 132 306 0 259 135 0 0 chr1 18617051 18617088 -224047265 - LTR29 LTR ERV1 -585 37 1 3152 172 121 26 chr1 18617140 18617804 -224046549 + LTR8A LTR ERV1 1 727 0 283 282 24 12 chr1 18617861 18617946 -224046407 + MIR SINE MIR 61 146 -116 181 271 0 21 chr1 18618051 18618099 -224046254 - L2 LINE L2 -1 3271 3225 3549 151 62 30 chr1 18618382 18618751 -224045602 + LTR8A LTR ERV1 12 368 -359 2206 140 3 0 chr1 18618751 18619059 -224045294 - AluSx SINE Alu -3 309 1 3549 151 62 30 chr1 18619059 18619383 -224044970 + LTR8A LTR ERV1 368 727 0 180 152 0 0 chr1 18619383 18619416 -224044937 + CT-rich Low_complexity Low_complexity 2 34 0 294 294 92 16 chr1 18619598 18619782 -224044571 - L2 LINE L2 -189 3083 2886 2537 181 45 38 chr1 18619782 18620357 -224043996 + MER34C LTR ERV1 1 579 -6 2328 112 14 6 chr1 18620446 18620795 -224043558 + MER4B LTR ERV1 1 352 -258 443 145 29 0 chr1 18620796 18620888 -224043465 - AluSp/q SINE Alu 0 310 217 392 86 0 0 chr1 18620888 18620946 -224043407 + MER4B LTR ERV1 553 610 0 604 216 152 97 chr1 18620946 18621155 -224043198 - MER39 LTR ERV1 -30 677 443 2169 108 0 0 chr1 18621155 18621467 -224042886 - AluSc SINE Alu 0 314 3 604 216 152 97 chr1 18621467 18621566 -224042787 - MER39 LTR ERV1 -264 443 351 410 134 0 0 chr1 18621572 18621639 -224042714 - AluJo SINE Alu -11 301 235 3952 129 13 19 chr1 18621646 18622274 -224042079 - MER41B LTR ERV1 -9 626 3 1195 215 4 9 chr1 18622274 18622502 -224041851 - AluJo SINE Alu -85 227 1 235 220 37 83 chr1 18622504 18622613 -224041740 - MER39 LTR ERV1 -355 352 249 * 240 256 22 56 chr1 18622587 18622677 -224041676 - LTR29 LTR ERV1 -535 87 1 276 308 60 0 chr1 18622689 18622822 -224041531 - L2 LINE L2 -534 2780 2640 280 250 104 0 chr1 18622823 18622919 -224041434 - LTR16C LTR ERVL 0 491 386 596 284 140 47 chr1 18623259 18623723 -224040630 - L2 LINE L2 -652 2662 2156 213 128 26 0 chr1 18624169 18624208 -224040145 + G-rich Low_complexity Low_complexity 1 40 0 614 218 23 15 chr1 18624466 18624599 -224039754 - MIR3 SINE MIR -61 147 14 360 276 26 43 chr1 18625351 18625467 -224038886 + MER81 DNA DNA 1 114 0 207 337 69 0 chr1 18625552 18625653 -224038700 + MIR SINE MIR 47 154 -108 1300 195 29 20 chr1 18625654 18625949 -224038404 - LTR10B LTR ERV1 0 547 221 188 233 17 17 chr1 18626154 18626214 -224038139 + L2 LINE L2 2456 2515 -799 348 250 24 0 chr1 18626419 18626503 -224037850 - MIR SINE MIR -63 145 60 348 295 200 19 chr1 18626507 18626717 -224037636 + MIR SINE MIR 15 262 0 482 246 77 8 chr1 18627581 18627711 -224036642 + MIR SINE MIR 13 151 -111 180 213 0 64 chr1 18627708 18627755 -224036598 + L2 LINE L2 3243 3286 -27 * 192 300 50 0 chr1 18627821 18627881 -224036472 + MER5A DNA MER1_type 6 68 -121 344 294 85 51 chr1 18628103 18628338 -224036015 - MIR SINE MIR 0 262 20 1860 175 13 7 chr1 18629182 18629485 -224034868 + AluJb SINE Alu 1 305 -7 556 255 107 29 chr1 18630048 18630291 -224034062 + MIR SINE MIR 1 262 0 345 225 0 0 chr1 18630464 18630535 -224033818 + MER103 DNA DNA 9 79 -87 401 369 58 36 chr1 18630765 18631074 -224033279 + L2 LINE L2 2871 3186 -86 268 360 0 12 chr1 18631173 18631259 -224033094 + MIR SINE MIR 4 88 -174 233 130 0 87 chr1 18631264 18631310 -224033043 + L2 LINE L2 3227 3268 -4 248 65 161 81 chr1 18631350 18631412 -224032941 + MIR SINE MIR 114 180 -82 277 98 0 0 chr1 18631414 18631455 -224032898 - AluSp/q SINE Alu -11 292 252 876 113 0 0 chr1 18631456 18631571 -224032782 - AluSp SINE Alu -198 115 1 470 196 11 0 chr1 18631571 18631663 -224032690 + MIR SINE MIR 170 262 0 861 252 35 8 chr1 18632516 18632774 -224031579 - LTR16C LTR ERVL -7 484 220 530 293 75 30 chr1 18632795 18633240 -224031113 + MLT1H LTR MaLR 39 549 0 346 299 103 0 chr1 18633242 18633359 -224030994 - LTR16C LTR ERVL -269 222 94 209 247 353 0 chr1 18633535 18633620 -224030733 + L2 LINE L2 3199 3313 0 * 479 302 131 34 chr1 18633619 18634069 -224030284 - L2 LINE L2 -234 3038 2499 236 197 0 15 chr1 18634292 18634358 -224029995 + CT-rich Low_complexity Low_complexity 3 67 0 230 362 62 26 chr1 18634420 18634589 -224029764 + MIR SINE MIR 3 183 -65 21 36 0 0 chr1 18634845 18634873 -224029480 + AT_rich Low_complexity Low_complexity 1 28 0 251 233 0 0 chr1 18635269 18635329 -224029024 - MIR SINE MIR -89 119 60 285 304 39 10 chr1 18635357 18635459 -224028894 + L2 LINE L2 3209 3313 0 743 275 90 24 chr1 18635572 18635906 -224028447 + MLT1H LTR MaLR 32 387 -162 1910 182 3 0 chr1 18635932 18636228 -224028125 + AluJb SINE Alu 1 297 -15 186 118 0 0 chr1 18636378 18636412 -224027941 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 504 330 54 27 chr1 18636619 18636843 -224027510 - MIR SINE MIR -13 249 20 351 355 7 26 chr1 18637065 18637172 -224027181 + MER5A DNA MER1_type 26 131 -58 1747 157 9 53 chr1 18637172 18637490 -224026863 - AluJo SINE Alu -8 304 1 351 355 7 26 chr1 18637490 18637534 -224026819 + MER5A DNA MER1_type 131 174 -15 180 0 0 0 chr1 18637743 18637763 -224026590 + (T)n Simple_repeat Simple_repeat 1 20 0 284 260 191 40 chr1 18637916 18638089 -224026264 - MIR SINE MIR -17 245 47 310 313 75 0 chr1 18638163 18638297 -224026056 + MIR3 SINE MIR 8 151 -57 663 283 64 34 chr1 18639254 18639519 -224024834 + L2 LINE L2 3041 3313 0 357 300 17 17 chr1 18640220 18640340 -224024013 + MER5A DNA MER1_type 1 120 -69 1661 188 84 15 chr1 18640340 18640675 -224023678 - MLT1A1 LTR MaLR 0 365 8 3129 177 26 0 chr1 18640717 18641264 -224023089 - MER68 LTR ERV1 0 562 2 279 301 27 62 chr1 18641802 18641948 -224022405 + MIR SINE MIR 57 197 -65 2818 114 46 2 chr1 18642126 18642538 -224021815 - MSTB1 LTR MaLR -2 430 1 333 247 39 20 chr1 18642560 18642673 -224021680 + MIR SINE MIR 51 164 -65 389 238 0 0 chr1 18642816 18642900 -224021453 - MER103 DNA DNA -45 121 38 426 275 32 81 chr1 18643665 18643907 -224020446 + MIR SINE MIR 5 242 -20 297 106 0 0 chr1 18643976 18644023 -224020330 - L1ME3A LINE L1 0 6170 6124 23 33 0 0 chr1 18644027 18644057 -224020296 + AT_rich Low_complexity Low_complexity 1 30 0 466 217 134 0 chr1 18644139 18644296 -224020057 - L1MD3 LINE L1 0 7995 7818 415 265 73 0 chr1 18644295 18644446 -224019907 - L1ME3A LINE L1 -33 6137 5976 * 24 32 0 0 chr1 18644749 18644780 -224019573 + AT_rich Low_complexity Low_complexity 1 31 0 688 196 0 42 chr1 18644799 18644816 -224019537 - AluJo SINE Alu -169 143 127 4685 22 9 0 chr1 18644816 18645353 -224019000 + L1PA3 LINE L1 5613 6154 -1 688 196 0 42 chr1 18645353 18645478 -224018875 - AluJo SINE Alu -185 127 7 250 167 0 0 chr1 18645484 18645526 -224018827 + MLT1C LTR MaLR 40 81 -386 230 294 12 0 chr1 18645678 18645763 -224018590 - L2 LINE L2 -1052 2262 2177 1839 184 17 0 chr1 18645776 18646134 -224018219 + MLT1B LTR MaLR 24 387 -3 454 291 103 0 chr1 18646139 18646314 -224018039 + MIR SINE MIR 70 262 0 227 259 44 111 chr1 18647437 18647572 -224016781 + MIR SINE MIR 18 143 -65 258 320 80 27 chr1 18647912 18648062 -224016291 + MIR SINE MIR 50 207 -55 778 247 31 51 chr1 18648250 18648505 -224015848 - MIR SINE MIR 0 262 13 216 229 0 0 chr1 18648604 18648652 -224015701 - L2 LINE L2 -12 3260 3213 764 296 15 0 chr1 18648694 18648893 -224015460 + MIR SINE MIR 52 253 -9 369 282 57 8 chr1 18648947 18649071 -224015282 - MIR SINE MIR -114 148 19 1756 166 65 3 chr1 18649368 18649676 -224014677 - MLT1A1 LTR MaLR -8 357 31 722 275 107 0 chr1 18649944 18650177 -224014176 + LTR16C LTR ERVL 233 490 -1 243 309 43 11 chr1 18650257 18650351 -224014002 + MIR SINE MIR 52 148 -60 2306 113 7 0 chr1 18650574 18650884 -224013469 - AluSx SINE Alu 0 312 1 458 258 159 0 chr1 18651298 18651449 -224012904 - MER5A DNA MER1_type -6 183 9 599 266 82 20 chr1 18651547 18651791 -224012562 - MIR SINE MIR -1 261 3 278 240 16 32 chr1 18652367 18652492 -224011861 + CT-rich Low_complexity Low_complexity 2 124 0 473 125 43 45 chr1 18652493 18652901 -224011452 + (TCTCTG)n Simple_repeat Simple_repeat 1 407 0 216 318 9 9 chr1 18652828 18652935 -224011418 + CT-rich Low_complexity Low_complexity 1 107 0 * 383 283 9 9 chr1 18653081 18653195 -224011158 + C-rich Low_complexity Low_complexity 1 114 0 366 310 48 86 chr1 18654573 18654863 -224009490 + L2 LINE L2 2994 3272 0 258 319 121 17 chr1 18655623 18655739 -224008614 + L2 LINE L2 3121 3248 -24 206 62 31 0 chr1 18655748 18655780 -224008573 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1415 292 97 17 chr1 18655788 18656775 -224007578 - L2 LINE L2 -21 3292 2228 634 261 67 62 chr1 18657220 18657375 -224006978 + MLT1J2 LTR MaLR 33 186 -223 2367 149 66 23 chr1 18657375 18657857 -224006496 - MLT1D LTR MaLR -2 503 1 634 261 67 62 chr1 18657857 18657996 -224006357 + MLT1J2 LTR MaLR 186 338 -71 2400 142 26 21 chr1 18657996 18658418 -224005935 - MSTA LTR MaLR -4 424 1 634 261 67 62 chr1 18658418 18658486 -224005867 + MLT1J2 LTR MaLR 338 404 -5 245 306 122 51 chr1 18658678 18658874 -224005479 + MLT1I LTR MaLR 86 295 -114 382 234 6 77 chr1 18658895 18659061 -224005292 + MLT1H LTR MaLR 404 536 -13 199 236 0 111 chr1 18659629 18659701 -224004652 + MIR SINE MIR 28 91 -171 323 303 76 8 chr1 18660473 18660605 -224003748 - MIR SINE MIR -34 228 88 186 43 0 0 chr1 18661613 18661636 -224002717 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 479 291 42 26 chr1 18661642 18661831 -224002522 - L2 LINE L2 -3 3269 3078 390 244 65 24 chr1 18661976 18662099 -224002254 - MIR SINE MIR -62 146 19 336 301 128 13 chr1 18662307 18662463 -224001890 - MIR3 SINE MIR -15 193 20 201 74 0 0 chr1 18662471 18662498 -224001855 + (CTCA)n Simple_repeat Simple_repeat 1 27 0 468 226 188 31 chr1 18662531 18662818 -224001535 - L2 LINE L2 -60 3253 2922 259 301 206 0 chr1 18663425 18663561 -224000792 - MIR SINE MIR -2 260 97 286 378 86 5 chr1 18663874 18664083 -224000270 - MIR SINE MIR -6 256 31 420 287 78 0 chr1 18664524 18664653 -223999700 + MIR3 SINE MIR 19 157 -51 1053 163 0 6 chr1 18664883 18665109 -223999244 + (TCCA)n Simple_repeat Simple_repeat 1 403 0 1053 106 0 0 chr1 18665109 18665289 -223999064 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 190 315 34 56 chr1 18665395 18665484 -223998869 - L2 LINE L2 -1 3312 3226 * 233 318 57 0 chr1 18665479 18665567 -223998786 - MIR SINE MIR 0 262 170 196 281 114 26 chr1 18665584 18665698 -223998655 - L2 LINE L2 0 3313 3190 455 266 31 0 chr1 18665698 18665826 -223998527 + L1ME2 LINE L1 6031 6162 -2 309 284 74 7 chr1 18665919 18666067 -223998286 - L2 LINE L2 -141 3172 3015 2460 227 65 28 chr1 18666067 18666209 -223998144 - L1ME2 LINE L1 -150 6014 5879 2181 141 0 0 chr1 18666209 18666506 -223997847 - AluSx SINE Alu -15 297 1 2460 227 65 28 chr1 18666506 18667545 -223996808 - L1ME2 LINE L1 -285 5879 4786 933 254 73 15 chr1 18667545 18667875 -223996478 - L2 LINE L2 -566 2748 2400 215 163 23 0 chr1 18667974 18668017 -223996336 - L2 LINE L2 -213 3059 3016 362 262 172 60 chr1 18668287 18668520 -223995833 + MIR SINE MIR 4 262 0 232 222 103 43 chr1 18668513 18668629 -223995724 - MIR SINE MIR -59 149 37 * 2214 125 0 23 chr1 18669268 18669572 -223994781 - AluSg SINE Alu -13 297 1 529 202 330 0 chr1 18669661 18669849 -223994504 + MIR SINE MIR 13 262 0 2113 110 20 7 chr1 18669893 18670192 -223994161 + AluSx SINE Alu 2 304 -8 313 327 103 10 chr1 18670295 18670515 -223993838 + MIR SINE MIR 2 249 -13 265 246 46 0 chr1 18672823 18672888 -223991465 + MIR SINE MIR 110 177 -85 238 226 0 32 chr1 18675037 18675099 -223989254 + CT-rich Low_complexity Low_complexity 1 60 0 227 281 67 11 chr1 18675156 18675245 -223989108 + MIR SINE MIR 44 137 -71 261 248 0 89 chr1 18675860 18675961 -223988392 - L2 LINE L2 -81 3232 3141 370 183 0 0 chr1 18676140 18676200 -223988153 - AluJo SINE Alu -116 186 127 233 216 0 91 chr1 18676297 18676385 -223987968 - MER63 DNA MER1_type -2 1060 981 333 228 13 13 chr1 18676527 18676606 -223987747 - L2 LINE L2 -541 2773 2695 483 320 36 10 chr1 18676832 18677026 -223987327 + MIR SINE MIR 20 218 -44 364 258 91 45 chr1 18677245 18677377 -223986976 - L2 LINE L2 -8 3264 3127 718 246 50 20 chr1 18677687 18677886 -223986467 - MIR SINE MIR -37 225 21 1148 103 0 6 chr1 18678280 18678455 -223985898 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 186 133 0 0 chr1 18678457 18678487 -223985866 + (TC)n Simple_repeat Simple_repeat 1 30 0 1877 159 0 43 chr1 18678487 18678813 -223985540 - AluJo SINE Alu 0 312 1 740 236 99 14 chr1 18678915 18679127 -223985226 + MIR SINE MIR 3 232 -30 1135 186 114 10 chr1 18679266 18679556 -223984797 + MER33 DNA MER1_type 5 324 0 310 371 29 0 chr1 18679556 18679696 -223984657 - MIR3 SINE MIR -53 155 12 333 267 0 0 chr1 18680298 18680414 -223983939 + C-rich Low_complexity Low_complexity 3 118 0 337 356 10 0 chr1 18680425 18680526 -223983827 + C-rich Low_complexity Low_complexity 3 104 0 243 286 0 0 chr1 18680537 18680642 -223983711 + C-rich Low_complexity Low_complexity 1 105 0 316 416 17 0 chr1 18680653 18680857 -223983496 + (TCTCTG)n Simple_repeat Simple_repeat 1 207 0 240 361 13 0 chr1 18680747 18680905 -223983448 + CT-rich Low_complexity Low_complexity 2 161 0 * 390 393 12 0 chr1 18680919 18681092 -223983261 + C-rich Low_complexity Low_complexity 5 179 0 2168 131 3 0 chr1 18681660 18681965 -223982388 + AluSp SINE Alu 1 306 -7 372 292 22 87 chr1 18682677 18682862 -223981491 + MIR SINE MIR 34 206 -56 197 259 24 12 chr1 18683409 18683494 -223980859 + L2 LINE L2 2968 3053 -260 * 467 294 129 51 chr1 18683484 18683855 -223980498 + L2 LINE L2 2861 3260 -12 399 303 122 64 chr1 18683917 18684404 -223979949 + L2 LINE L2 2799 3313 0 710 220 43 38 chr1 18685274 18685460 -223978893 + MER5A DNA MER1_type 3 189 0 316 342 40 13 chr1 18686612 18686764 -223977589 + MIR3 SINE MIR 20 175 -33 271 280 47 9 chr1 18687758 18687865 -223976488 + MIR SINE MIR 25 135 -127 758 147 0 16 chr1 18687890 18688019 -223976334 - FLAM_C SINE Alu -5 128 2 347 303 123 0 chr1 18688020 18688142 -223976211 + MIR SINE MIR 122 258 -4 685 321 8 12 chr1 18688544 18688787 -223975566 + MIR SINE MIR 21 262 0 849 267 27 4 chr1 18689575 18689800 -223974553 + MIR SINE MIR 31 260 -2 204 100 0 0 chr1 18690224 18690254 -223974099 + MIR SINE MIR 119 148 -114 307 196 49 12 chr1 18690390 18690485 -223973868 + MIR SINE MIR 25 123 -85 347 320 124 5 chr1 18691368 18691562 -223972791 - MIR SINE MIR -32 230 14 257 286 155 43 chr1 18691734 18691895 -223972458 - MIR SINE MIR -20 242 64 * 641 260 160 14 chr1 18691892 18692111 -223972242 + MIR SINE MIR 8 258 -4 2092 149 3 0 chr1 18692111 18692419 -223971934 + AluSx SINE Alu 1 309 -3 1302 139 0 5 chr1 18693409 18693596 -223970757 + AluJo SINE Alu 85 270 -42 4607 201 7 16 chr1 18693977 18695383 -223968970 + L1MB8 LINE L1 4779 6171 -7 2109 129 7 0 chr1 18695401 18695743 -223968610 + AluSx SINE Alu 1 344 0 600 257 77 6 chr1 18696090 18696273 -223968080 + MIR SINE MIR 58 253 -9 791 194 39 6 chr1 18696353 18696533 -223967820 + MLT1C LTR MaLR 1 186 -281 506 192 77 0 chr1 18696540 18696644 -223967709 + FLAM_C SINE Alu 5 116 -27 998 146 20 4 chr1 18696655 18696910 -223967443 + GA-rich Low_complexity Low_complexity 1 259 0 1045 213 35 42 chr1 18696925 18697212 -223967141 + MLT1C LTR MaLR 180 464 -3 380 208 58 50 chr1 18697246 18697366 -223966987 + L2 LINE L2 3193 3313 0 397 243 156 98 chr1 18697389 18697665 -223966688 + L2 LINE L2 3021 3312 -1 194 204 0 41 chr1 18697815 18697864 -223966489 - MIR SINE MIR -141 67 21 1768 169 33 3 chr1 18698042 18698343 -223966010 - AluJb SINE Alu 0 312 3 369 285 35 35 chr1 18698500 18698672 -223965681 + MIR SINE MIR 19 190 -72 355 349 0 8 chr1 18699886 18700015 -223964338 + MIR SINE MIR 81 208 -54 415 294 25 0 chr1 18700426 18700545 -223963808 - MIR SINE MIR -49 213 92 232 286 14 29 chr1 18700560 18700630 -223963723 + MIR SINE MIR 77 145 -117 * 260 286 32 52 chr1 18700627 18700698 -223963655 - MIR3 SINE MIR 0 208 137 2467 138 28 3 chr1 18700698 18701053 -223963300 + THE1B LTR MaLR 1 364 0 260 286 32 52 chr1 18701053 18701135 -223963218 - MIR3 SINE MIR -71 137 58 618 253 14 0 chr1 18701310 18701456 -223962897 + MIR SINE MIR 78 225 -37 183 331 96 42 chr1 18701456 18701716 -223962637 + L2 LINE L2 3037 3310 -3 346 290 49 15 chr1 18702169 18702302 -223962051 - MIR3 SINE MIR -15 193 57 209 250 39 0 chr1 18703334 18703386 -223960967 - MIR SINE MIR -114 148 95 1301 256 35 0 chr1 18703686 18704002 -223960351 - MER58B DNA MER1_type -14 327 1 307 368 68 18 chr1 18704120 18704283 -223960070 + MIR SINE MIR 20 190 -72 360 352 98 27 chr1 18705841 18706176 -223958177 + L2 LINE L2 2397 2755 -559 3555 86 12 4 chr1 18706191 18706677 -223957676 + L1PB1 LINE L1 5662 6151 0 1318 203 8 8 chr1 18706781 18707032 -223957321 + L1MC1 LINE L1 6083 6333 0 318 389 0 0 chr1 18707129 18707296 -223957057 + C-rich Low_complexity Low_complexity 2 168 0 460 200 61 0 chr1 18707349 18707464 -223956889 - L1MD3 LINE L1 -5 7990 7869 194 178 0 0 chr1 18708114 18708159 -223956194 + L2 LINE L2 3020 3064 -208 182 234 0 21 chr1 18708277 18708324 -223956029 + L2 LINE L2 3266 3311 -2 449 324 26 12 chr1 18708327 18708527 -223955826 + MIR SINE MIR 12 219 -43 203 323 0 15 chr1 18709097 18709162 -223955191 + MIR SINE MIR 178 241 -21 276 295 39 0 chr1 18709206 18709284 -223955069 - L2 LINE L2 -12 3301 3221 2189 172 3 6 chr1 18709290 18709656 -223954697 + MER47A DNA MER2_type 1 365 -1 1254 296 84 14 chr1 18709904 18710475 -223953878 - L1ME1 LINE L1 -5 6161 5551 215 250 167 10 chr1 18713181 18713277 -223951076 - MIR3 SINE MIR -44 164 54 192 220 80 0 chr1 18714424 18714474 -223949879 + MIR SINE MIR 82 135 -73 233 250 0 0 chr1 18715612 18715660 -223948693 - L2 LINE L2 -20 3252 3205 256 237 184 44 chr1 18715705 18715819 -223948534 + MIR SINE MIR 11 140 -122 * 561 216 34 83 chr1 18715817 18715991 -223948362 - MIR SINE MIR -68 194 30 1509 202 94 57 chr1 18715991 18716343 -223948010 + MLT1A1 LTR MaLR 1 365 0 561 216 34 83 chr1 18716343 18716372 -223947981 - MIR SINE MIR -232 30 1 225 313 40 0 chr1 18716373 18716474 -223947879 - MIR SINE MIR -76 132 29 459 290 19 32 chr1 18716914 18717069 -223947284 - MIR SINE MIR -63 199 47 835 221 20 74 chr1 18717758 18718056 -223946297 - L2 LINE L2 0 3313 3032 1551 236 52 33 chr1 18718329 18718787 -223945566 + MLT1J LTR MaLR 43 509 -2 345 322 0 78 chr1 18718908 18719088 -223945265 - Charlie8 DNA MER1_type -2245 172 7 309 109 0 0 chr1 18719297 18719343 -223945010 + (CA)n Simple_repeat Simple_repeat 2 47 0 885 232 68 5 chr1 18719784 18720012 -223944341 + MIR SINE MIR 6 240 -22 609 317 20 5 chr1 18720327 18720529 -223943824 + MIR SINE MIR 3 207 -55 314 307 199 6 chr1 18720604 18720770 -223943583 - MIR SINE MIR 0 262 65 209 320 40 0 chr1 18720842 18720917 -223943436 + L2 LINE L2 3230 3307 -6 * 704 179 20 119 chr1 18720915 18721116 -223943237 - MIR SINE MIR 0 262 82 713 171 33 8 chr1 18721875 18722247 -223942106 + (TCCA)n Simple_repeat Simple_repeat 1 381 0 373 366 39 32 chr1 18722251 18722560 -223941793 - L2 LINE L2 0 3313 3003 578 320 40 18 chr1 18723071 18723299 -223941054 + MIR SINE MIR 3 235 -27 410 304 36 10 chr1 18723965 18724107 -223940246 + MIR SINE MIR 19 163 -61 332 254 0 0 chr1 18724146 18724213 -223940140 + L2 LINE L2 3190 3256 -16 813 214 71 20 chr1 18724243 18724439 -223939914 - MIR SINE MIR -24 238 33 280 346 53 15 chr1 18724788 18724921 -223939432 - L2 LINE L2 -17 3255 3118 2483 175 59 2 chr1 18724966 18725423 -223938930 + MLT1D LTR MaLR 23 505 0 650 264 131 48 chr1 18725556 18725849 -223938504 - L2 LINE L2 0 3313 2991 2450 108 30 25 chr1 18725849 18726211 -223938142 + THE1B LTR MaLR 1 364 0 650 264 131 48 chr1 18726211 18726231 -223938122 - L2 LINE L2 -322 2991 2974 958 264 96 38 chr1 18726600 18726680 -223937673 + L1ME3 LINE L1 5505 5579 -583 2317 176 28 26 chr1 18726680 18727146 -223937207 + MLT1C LTR MaLR 1 467 0 958 264 96 38 chr1 18727146 18727409 -223936944 + L1ME3 LINE L1 5579 5868 -294 232 244 219 42 chr1 18727431 18727550 -223936803 + L1ME3 LINE L1 5940 6079 -83 697 277 115 13 chr1 18728277 18728512 -223935841 + MIR SINE MIR 4 262 0 311 295 27 9 chr1 18729198 18729310 -223935043 + MIR SINE MIR 109 222 -40 206 261 0 0 chr1 18729399 18729445 -223934908 + L2 LINE L2 3227 3272 0 206 370 110 7 chr1 18729933 18730087 -223934266 - MIR SINE MIR -28 234 65 855 265 15 0 chr1 18730227 18730427 -223933926 + MIR SINE MIR 50 252 -10 300 310 23 39 chr1 18730973 18731102 -223933251 - MIR3 SINE MIR -45 163 37 664 301 99 32 chr1 18731195 18731778 -223932575 - L2 LINE L2 -40 3273 2652 314 348 18 0 chr1 18731840 18731952 -223932401 + MIR SINE MIR 33 146 -62 1101 60 21 20 chr1 18732172 18732613 -223931740 + (TCCA)n Simple_repeat Simple_repeat 1 441 0 417 39 0 0 chr1 18733047 18733098 -223931255 + (TG)n Simple_repeat Simple_repeat 2 52 0 434 225 94 14 chr1 18733231 18733369 -223930984 + MIR3 SINE MIR 34 182 -26 486 340 64 31 chr1 18733397 18733788 -223930565 + L2 LINE L2 2201 2604 -710 192 200 200 0 chr1 18733898 18733963 -223930390 - MER5B DNA MER1_type 0 178 101 252 268 0 0 chr1 18734042 18734098 -223930255 + L2 LINE L2 3194 3249 -64 181 318 239 0 chr1 18734601 18734689 -223929664 - L2 LINE L2 -3 3269 3161 2042 106 3 3 chr1 18736155 18736474 -223927879 + AluSx SINE Alu 1 319 0 236 330 17 8 chr1 18736548 18736666 -223927687 + MIR SINE MIR 26 144 -118 234 298 0 36 chr1 18736779 18736863 -223927490 - L2 LINE L2 -3 3269 3189 339 206 54 99 chr1 18737489 18737652 -223926701 + MER5A DNA MER1_type 7 170 -16 755 178 8 0 chr1 18737713 18737842 -223926511 - FLAM_C SINE Alu -4 139 10 268 311 119 13 chr1 18738843 18738994 -223925359 - L2 LINE L2 -5 3267 3101 272 194 14 56 chr1 18739409 18739481 -223924872 + MER39 LTR ERV1 5 73 -634 641 323 36 66 chr1 18739634 18739899 -223924454 + L2 LINE L2 2855 3101 -212 1529 184 87 16 chr1 18739899 18740220 -223924133 - MER2 DNA MER2_type 0 344 1 641 323 36 66 chr1 18740220 18740425 -223923928 + L2 LINE L2 3101 3311 -2 516 290 166 54 chr1 18740541 18740800 -223923553 - L2 LINE L2 0 3272 2985 665 289 67 18 chr1 18741085 18741524 -223922829 + MER39 LTR ERV1 2 666 -41 364 235 144 0 chr1 18741541 18741673 -223922680 - LTR16C LTR ERVL -24 467 317 262 264 28 0 chr1 18741805 18741877 -223922476 - L2 LINE L2 -6 3307 3234 583 272 42 26 chr1 18741905 18742096 -223922257 - LTR16C LTR ERVL -218 273 80 253 304 83 58 chr1 18742172 18742484 -223921869 + L2 LINE L2 2994 3313 0 195 184 53 0 chr1 18742570 18742608 -223921745 - MIR SINE MIR -91 117 78 339 267 0 0 chr1 18743176 18743262 -223921091 + MIR3 SINE MIR 81 166 -42 190 153 0 119 chr1 18743328 18743387 -223920966 + MIR SINE MIR 137 188 -74 250 286 89 54 chr1 18743521 18743689 -223920664 - MIR SINE MIR -51 211 38 296 304 24 48 chr1 18743742 18743867 -223920486 - MIR SINE MIR -123 139 18 375 296 35 0 chr1 18744532 18744647 -223919706 - L2 LINE L2 -1 3271 3153 211 368 9 0 chr1 18745041 18745147 -223919206 - L2 LINE L2 -251 3021 2915 334 326 81 17 chr1 18745399 18745571 -223918782 + MIR SINE MIR 1 183 -79 432 296 127 31 chr1 18746016 18746446 -223917907 - L2 LINE L2 -181 3091 2608 881 163 4 114 chr1 18747955 18748182 -223916171 + MER20 DNA MER1_type 16 217 -2 309 325 0 0 chr1 18748252 18748329 -223916024 - MIR SINE MIR -63 145 69 336 234 131 19 chr1 18749637 18749744 -223914609 + MIR SINE MIR 74 192 -70 1350 91 6 11 chr1 18750365 18750563 -223913790 - AluY SINE Alu 0 311 118 22 0 0 0 chr1 18750563 18750585 -223913768 + AT_rich Low_complexity Low_complexity 1 22 0 2802 29 0 0 chr1 18750585 18750895 -223913458 - AluYa5 SINE Alu -1 310 1 306 290 129 0 chr1 18750895 18750988 -223913365 + L2 LINE L2 3209 3313 0 185 194 242 0 chr1 18751003 18751065 -223913288 - L2 LINE L2 -24 3289 3213 235 218 18 18 chr1 18751424 18751479 -223912874 + L2 LINE L2 3200 3254 -18 214 225 42 14 chr1 18751498 18751569 -223912784 - MIR SINE MIR -108 154 82 369 250 93 69 chr1 18751680 18751884 -223912469 + MIR SINE MIR 28 236 -26 182 298 21 0 chr1 18751902 18751949 -223912404 - MIR SINE MIR 0 262 215 183 80 0 0 chr1 18752586 18752611 -223911742 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 376 335 0 19 chr1 18753131 18753286 -223911067 + MIR SINE MIR 71 222 -40 263 276 40 0 chr1 18753406 18753482 -223910871 + L2 LINE L2 3235 3313 0 198 294 0 0 chr1 18753674 18753725 -223910628 - L2 LINE L2 -43 3270 3220 236 274 89 40 chr1 18753779 18753903 -223910450 + L2 LINE L2 3183 3312 -1 187 339 85 17 chr1 18753904 18754022 -223910331 - MIR SINE MIR -109 153 28 396 40 0 0 chr1 18755113 18755163 -223909190 + (TG)n Simple_repeat Simple_repeat 2 51 0 252 303 34 107 chr1 18755425 18755603 -223908750 - MER5A DNA MER1_type -9 180 16 297 286 53 6 chr1 18755710 18755865 -223908488 - MIR3 SINE MIR -21 187 20 2174 105 3 23 chr1 18756212 18756516 -223907837 - AluSx SINE Alu -13 299 2 534 189 0 0 chr1 18756581 18756692 -223907661 + (TTCA)n Simple_repeat Simple_repeat 4 114 0 482 261 52 0 chr1 18757152 18757286 -223907067 + MIR SINE MIR 110 250 -12 236 316 33 79 chr1 18757335 18757487 -223906866 - L2 LINE L2 -540 2774 2630 507 268 56 22 chr1 18758121 18758300 -223906053 + MIR3 SINE MIR 12 196 -12 404 295 209 19 chr1 18758389 18758657 -223905696 - L2 LINE L2 -1 3312 2994 1909 158 0 7 chr1 18758939 18759267 -223905086 + AluJb SINE Alu 1 326 0 2150 99 0 4 chr1 18759269 18759591 -223904762 + AluSx SINE Alu 16 336 0 1479 254 35 43 chr1 18759761 18760269 -223904084 - L1ME2 LINE L1 -10 6154 5651 272 254 0 0 chr1 18760300 18760359 -223903994 - L2 LINE L2 -8 3264 3206 198 271 168 9 chr1 18760515 18760622 -223903731 - MIR SINE MIR -62 146 23 229 298 113 24 chr1 18760647 18760771 -223903582 - MIR3 SINE MIR -62 146 12 910 272 104 39 chr1 18761171 18761605 -223902748 + MLT1H1 LTR MaLR 1 462 -93 322 304 43 43 chr1 18761717 18761947 -223902406 - LTR33 LTR ERVL 0 521 292 519 277 15 0 chr1 18762603 18762740 -223901613 + MER45A DNA AcHobo 33 171 -7 2150 139 13 3 chr1 18762742 18763051 -223901302 - AluSx SINE Alu 0 312 1 945 204 87 0 chr1 18763127 18763333 -223901020 - MER58A DNA MER1_type 0 224 1 214 320 27 27 chr1 18763598 18763673 -223900680 + L2 LINE L2 3150 3224 -48 216 260 0 65 chr1 18763792 18763869 -223900484 - MIR SINE MIR -91 117 46 520 40 13 13 chr1 18764251 18764327 -223900026 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 918 103 0 0 chr1 18764327 18764463 -223899890 + (GGAAA)n Simple_repeat Simple_repeat 4 139 0 2229 107 17 0 chr1 18764464 18764755 -223899598 + AluSx SINE Alu 11 306 -6 560 264 71 30 chr1 18765265 18765442 -223898911 - MIR SINE MIR -12 250 63 1924 124 16 72 chr1 18765442 18765828 -223898525 + THE1B LTR MaLR 1 364 0 560 264 71 30 chr1 18765828 18765847 -223898506 - MIR SINE MIR -199 63 46 209 231 15 46 chr1 18766024 18766089 -223898264 - MIR SINE MIR -164 98 36 365 321 0 0 chr1 18766276 18766385 -223897968 + MER81 DNA DNA 1 109 -5 429 339 18 12 chr1 18766468 18766636 -223897717 + L3 LINE CR1 1295 1463 -114 308 155 0 17 chr1 18767887 18767945 -223896408 - MIR SINE MIR -76 132 76 380 319 14 7 chr1 18769464 18769608 -223894745 + MIR3 SINE MIR 16 160 -48 593 231 0 15 chr1 18769679 18769809 -223894544 - L2 LINE L2 0 3313 3186 857 233 98 0 chr1 18769809 18770002 -223894351 - MER58A DNA MER1_type 0 224 13 668 275 70 39 chr1 18771043 18771301 -223893052 + MLT1H LTR MaLR 77 342 -207 1068 249 19 4 chr1 18771442 18771699 -223892654 + MIR SINE MIR 1 261 -1 796 294 19 8 chr1 18772404 18772666 -223891687 - MER46C DNA MER2_type -1 337 73 313 223 23 115 chr1 18772658 18772788 -223891565 - MER46C DNA MER2_type -220 118 1 * 235 290 48 0 chr1 18773286 18773348 -223891005 - MIR SINE MIR -59 149 85 325 275 0 0 chr1 18773394 18773474 -223890879 - MIR SINE MIR 0 262 183 223 319 21 21 chr1 18774042 18774136 -223890217 - MER5A DNA MER1_type -57 132 39 543 285 90 5 chr1 18775204 18775404 -223888949 - MIR SINE MIR -6 256 40 477 192 31 54 chr1 18775514 18775644 -223888709 + LTR16C LTR ERVL 170 296 -195 628 242 46 7 chr1 18775649 18775802 -223888551 + MER5A DNA MER1_type 23 181 -8 597 256 89 25 chr1 18775810 18776013 -223888340 + LTR16C LTR ERVL 276 491 0 1970 181 3 6 chr1 18776145 18776483 -223887870 - MER66B LTR ERV1 -147 339 3 219 367 0 10 chr1 18776535 18776633 -223887720 - MIR SINE MIR -11 251 155 2636 163 2 47 chr1 18776954 18777463 -223886890 + MER66B LTR ERV1 1 486 0 513 273 77 10 chr1 18777670 18777879 -223886474 - MIR SINE MIR -6 256 34 331 340 102 7 chr1 18778451 18778598 -223885755 - MIR SINE MIR -74 188 28 534 254 88 29 chr1 18778950 18779155 -223885198 - MIR SINE MIR -10 252 36 409 250 100 17 chr1 18779217 18779337 -223885016 - MIR SINE MIR -62 146 17 621 311 40 63 chr1 18781537 18782142 -223882211 - L2 LINE L2 -257 3015 2420 489 84 0 0 chr1 18782890 18782961 -223881392 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 210 234 0 31 chr1 18783303 18783367 -223880986 + (TTAGGG)n Simple_repeat Simple_repeat 4 65 0 312 27 0 0 chr1 18783400 18783437 -223880916 + (TTAGGG)n Simple_repeat Simple_repeat 5 41 0 506 328 74 4 chr1 18783591 18783820 -223880533 + MIR SINE MIR 16 260 -2 184 352 56 16 chr1 18783828 18783953 -223880400 + L2 LINE L2 2924 3053 -219 509 341 19 12 chr1 18784821 18785058 -223879295 - MIR SINE MIR -18 244 9 250 319 43 55 chr1 18785257 18785420 -223878933 + MIR3 SINE MIR 45 205 -3 2539 73 3 0 chr1 18785446 18785749 -223878604 + AluY SINE Alu 1 304 -7 254 321 0 0 chr1 18785942 18786026 -223878327 + L2 LINE L2 2550 2633 -681 847 254 108 21 chr1 18786075 18786484 -223877869 + MLT1J2 LTR MaLR 3 409 0 711 320 151 3 chr1 18786484 18787049 -223877304 + L2 LINE L2 2656 3306 -7 361 210 248 34 chr1 18787021 18787195 -223877158 - MIR SINE MIR -37 225 19 * 545 124 10 0 chr1 18787661 18787758 -223876595 + (GGGA)n Simple_repeat Simple_repeat 3 100 0 243 356 90 31 chr1 18788429 18788718 -223875635 + L2 LINE L2 2560 2865 -449 469 330 53 42 chr1 18788800 18789085 -223875268 + L2 LINE L2 2985 3272 0 931 259 56 4 chr1 18789880 18790112 -223874241 + MIR SINE MIR 19 262 0 222 256 19 0 chr1 18790184 18790242 -223874111 - MIR SINE MIR -61 147 94 565 75 0 0 chr1 18790669 18790749 -223873604 + Alu SINE Alu 223 302 -7 300 292 0 0 chr1 18790751 18790840 -223873513 + MIR SINE MIR 77 165 -97 279 192 0 0 chr1 18792065 18792117 -223872236 + L2 LINE L2 3209 3260 -12 458 305 123 13 chr1 18792133 18792369 -223871984 + L1M4 LINE L1 4158 4419 -1727 550 306 70 12 chr1 18792408 18792738 -223871615 + L1M4 LINE L1 3808 4156 -1990 607 279 6 13 chr1 18792759 18792917 -223871436 - MIR SINE MIR -76 186 30 326 288 68 41 chr1 18792954 18793100 -223871253 + L1M4 LINE L1 4177 4326 -1820 237 258 16 0 chr1 18793133 18793195 -223871158 + L2 LINE L2 3250 3312 -1 355 288 18 9 chr1 18793684 18793795 -223870558 + MER94 DNA DNA 16 127 -7 191 291 0 36 chr1 18793808 18793863 -223870490 - MIR SINE MIR -91 171 119 758 281 61 38 chr1 18794184 18794611 -223869742 - L2 LINE L2 -580 2734 2298 23 0 0 0 chr1 18795317 18795340 -223869013 + AT_rich Low_complexity Low_complexity 1 23 0 422 329 55 0 chr1 18795897 18796061 -223868292 + MIR SINE MIR 55 227 -35 367 315 9 0 chr1 18796260 18796368 -223867985 + MIR SINE MIR 20 128 -134 194 346 33 33 chr1 18796451 18796604 -223867749 - L2 LINE L2 -466 2848 2696 474 330 67 18 chr1 18796920 18797144 -223867209 - L3 LINE CR1 -8 1569 1335 276 91 0 0 chr1 18797158 18797202 -223867151 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 234 363 29 0 chr1 18797208 18797310 -223867043 - L2 LINE L2 -35 3278 3174 245 246 36 138 chr1 18797354 18797484 -223866869 + L2 LINE L2 3112 3211 -102 1804 166 0 19 chr1 18797484 18797791 -223866562 - AluJb SINE Alu -3 309 9 245 246 36 138 chr1 18797791 18797884 -223866469 + L2 LINE L2 3211 3312 -1 510 344 25 27 chr1 18798035 18798396 -223865957 - L2 LINE L2 -236 3036 2683 351 320 0 0 chr1 18798882 18798982 -223865371 - MIR3 SINE MIR -37 171 72 1714 301 134 35 chr1 18800847 18801335 -223863018 + L2 LINE L2 1825 2263 -1050 2396 124 28 3 chr1 18801335 18801690 -223862663 - THE1B LTR MaLR 0 364 1 1714 301 134 35 chr1 18801690 18802544 -223861809 + L2 LINE L2 2263 3312 -1 328 342 13 34 chr1 18802612 18802761 -223861592 - MER5B DNA MER1_type -32 146 1 2341 109 62 11 chr1 18802966 18803323 -223861030 + THE1C LTR MaLR 1 375 0 193 311 149 37 chr1 18804165 18804326 -223860027 - MIR SINE MIR -1 261 83 215 332 154 48 chr1 18805006 18805214 -223859139 - L2 LINE L2 0 3272 3043 466 269 36 5 chr1 18805218 18805386 -223858967 + MIR SINE MIR 87 259 -3 351 0 0 0 chr1 18805832 18805871 -223858482 + (CA)n Simple_repeat Simple_repeat 1 39 0 1088 199 24 10 chr1 18806031 18806237 -223858116 + MER3 DNA MER1_type 1 209 0 1378 269 18 0 chr1 18808677 18809012 -223855341 + MER58B DNA MER1_type 1 341 0 681 227 109 27 chr1 18811721 18811941 -223852412 - MIR SINE MIR -19 243 6 396 0 0 0 chr1 18812663 18812707 -223851646 + (TG)n Simple_repeat Simple_repeat 1 44 0 216 0 0 0 chr1 18812706 18812730 -223851623 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 2025 122 0 0 chr1 18812731 18813009 -223851344 - AluSx SINE Alu -33 279 2 1074 273 102 8 chr1 18813129 18813492 -223850861 - L2 LINE L2 -1 3312 2916 439 214 214 29 chr1 18813614 18813754 -223850599 - MER96 DNA MER1_type? -9 166 1 265 306 0 0 chr1 18814075 18814137 -223850216 + L2 LINE L2 3104 3165 -107 253 372 14 28 chr1 18814228 18814373 -223849980 - MIR SINE MIR -107 155 13 243 325 81 24 chr1 18815106 18815229 -223849124 + MIR SINE MIR 27 156 -106 491 230 119 19 chr1 18815700 18815859 -223848494 + MIR3 SINE MIR 8 188 -20 491 237 9 18 chr1 18816431 18816545 -223847808 + MER81 DNA DNA 1 113 -1 180 0 0 0 chr1 18816714 18816734 -223847619 + (TGG)n Simple_repeat Simple_repeat 1 20 0 403 351 106 17 chr1 18816875 18817282 -223847071 + L2 LINE L2 2810 3252 -20 287 297 142 7 chr1 18818152 18818307 -223846046 - MIR SINE MIR 0 262 87 629 218 78 58 chr1 18818667 18818730 -223845623 - MIR SINE MIR 0 262 202 1906 188 55 60 chr1 18818730 18819103 -223845250 - MER47B DNA MER2_type -1905 418 46 1707 172 3 28 chr1 18819103 18819422 -223844931 + AluJb SINE Alu 1 311 -1 1906 188 55 60 chr1 18819422 18819468 -223844885 - MER47B DNA MER2_type -2277 46 1 629 218 78 58 chr1 18819468 18819657 -223844696 - MIR SINE MIR -60 202 3 188 250 0 0 chr1 18820111 18820155 -223844198 + MIR SINE MIR 118 161 -101 199 301 97 0 chr1 18820836 18820939 -223843414 - MIR SINE MIR -90 172 60 302 290 155 21 chr1 18821026 18821219 -223843134 - MIR SINE MIR 0 262 44 1932 100 129 62 chr1 18821426 18821468 -223842885 - THE1B LTR MaLR 0 364 326 2064 101 7 7 chr1 18821468 18821764 -223842589 + AluSg1 SINE Alu 1 296 -13 1932 100 129 62 chr1 18821764 18822062 -223842291 - THE1B LTR MaLR -38 326 1 269 286 110 53 chr1 18822237 18822482 -223841871 - L2 LINE L2 -20 3252 2994 324 200 75 0 chr1 18822679 18822759 -223841594 - MIR SINE MIR -131 131 46 267 264 22 33 chr1 18823302 18823393 -223840960 - L2 LINE L2 -85 3187 3098 279 301 39 39 chr1 18823497 18823600 -223840753 - L2 LINE L2 -90 3182 3080 338 232 0 0 chr1 18823690 18823759 -223840594 + MIR SINE MIR 76 144 -118 1826 128 3 14 chr1 18824295 18824577 -223839776 - AluSx SINE Alu -5 307 29 289 281 167 18 chr1 18824951 18825065 -223839288 + MIR SINE MIR 19 149 -59 349 238 107 0 chr1 18826023 18826138 -223838215 - MIR SINE MIR -32 176 49 257 171 45 23 chr1 18826597 18826685 -223837668 + GA-rich Low_complexity Low_complexity 5 94 0 278 303 30 10 chr1 18827431 18827530 -223836823 + MIR SINE MIR 44 144 -64 314 326 61 0 chr1 18827723 18827855 -223836498 + MIR SINE MIR 61 200 -62 402 302 94 0 chr1 18828455 18828614 -223835739 - MIR SINE MIR -29 233 60 372 354 25 13 chr1 18828842 18829000 -223835353 - MIR SINE MIR -82 180 21 201 209 15 90 chr1 18829011 18829078 -223835275 + L2 LINE L2 3011 3072 -241 444 288 42 0 chr1 18829299 18829417 -223834936 - L2 LINE L2 0 3313 3191 435 238 56 8 chr1 18829476 18829602 -223834751 - MER94 DNA DNA 0 134 3 263 314 134 0 chr1 18829646 18829818 -223834535 + MLT1J2 LTR MaLR 1 195 -255 1032 260 43 54 chr1 18829860 18830244 -223834109 + MLT1J2 LTR MaLR 80 444 -6 255 303 229 0 chr1 18830251 18830360 -223833993 - L2 LINE L2 -255 3058 2925 202 220 20 0 chr1 18830951 18831001 -223833352 + L2 LINE L2 3202 3252 -20 195 256 144 11 chr1 18831043 18831133 -223833220 - MIR SINE MIR -34 228 127 1678 147 11 11 chr1 18831204 18831477 -223832876 - AluJo SINE Alu -39 273 1 350 356 90 0 chr1 18831525 18831713 -223832640 - MIR SINE MIR 0 262 58 495 288 0 0 chr1 18832733 18832847 -223831506 - L2 LINE L2 0 3313 3200 944 243 33 25 chr1 18832847 18832973 -223831380 + MIR SINE MIR 1 131 -131 2674 92 0 42 chr1 18832973 18833015 -223831338 - THE1B LTR MaLR 0 364 322 2414 56 0 7 chr1 18833015 18833317 -223831036 + AluY SINE Alu 1 300 -11 2674 92 0 42 chr1 18833317 18833654 -223830699 - THE1B LTR MaLR -42 322 1 944 243 33 25 chr1 18833654 18833770 -223830583 + MIR SINE MIR 131 245 -17 725 335 95 16 chr1 18833797 18834501 -223829852 - L2 LINE L2 -112 3201 2445 414 272 55 0 chr1 18834520 18834657 -223829696 + MIR SINE MIR 45 206 -56 257 293 192 12 chr1 18835269 18835436 -223828917 - MIR SINE MIR -6 256 60 293 269 111 0 chr1 18836578 18836686 -223827667 - MIR SINE MIR -127 135 16 256 275 159 24 chr1 18837964 18838171 -223826182 - L2 LINE L2 -530 2784 2550 430 199 145 7 chr1 18839037 18839185 -223825168 + MIR SINE MIR 9 187 -62 1711 167 7 3 chr1 18839373 18839661 -223824692 - AluJo SINE Alu -23 289 1 547 213 22 29 chr1 18839749 18839885 -223824468 - MIR3 SINE MIR -59 149 15 398 288 46 0 chr1 18840718 18840871 -223823482 - L2 LINE L2 -217 3055 2896 486 323 35 31 chr1 18840912 18840991 -223823362 - MIR SINE MIR -31 231 154 1125 220 134 80 chr1 18840991 18841223 -223823130 - LTR16C LTR ERVL -3 488 270 1606 154 8 11 chr1 18841223 18841489 -223822864 + AluJb SINE Alu 25 289 -23 1125 220 134 80 chr1 18841489 18841719 -223822634 - LTR16C LTR ERVL -221 270 1 486 323 35 31 chr1 18841719 18841868 -223822485 - MIR SINE MIR -108 154 2 222 263 0 0 chr1 18842447 18842504 -223821849 + L2 LINE L2 3214 3270 -2 * 425 262 213 0 chr1 18842490 18842673 -223821680 + MIR SINE MIR 34 255 -7 313 271 52 10 chr1 18842764 18842860 -223821493 + LTR16C LTR ERVL 201 300 -191 333 292 58 8 chr1 18842888 18843008 -223821345 + LTR16C LTR ERVL 358 483 -8 912 243 5 14 chr1 18843450 18843672 -223820681 + MIR SINE MIR 38 257 -5 530 299 12 12 chr1 18843850 18844017 -223820336 + MIR SINE MIR 21 187 -75 2473 137 32 7 chr1 18844054 18844410 -223819943 + MSTA LTR MaLR 11 381 -47 8545 33 5 0 chr1 18844410 18846220 -223818133 + L1PA4 LINE L1 4374 6188 0 2473 137 32 7 chr1 18846220 18846270 -223818083 + MSTA LTR MaLR 381 428 0 207 162 0 0 chr1 18847271 18847308 -223817045 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 218 348 134 0 chr1 18847364 18847476 -223816877 + L2 LINE L2 3185 3311 -2 241 259 136 0 chr1 18847477 18847558 -223816795 - MIR SINE MIR -66 196 105 406 274 36 42 chr1 18847911 18848079 -223816274 - MIR SINE MIR -56 206 40 285 325 42 33 chr1 18849008 18849128 -223815225 - L2 LINE L2 -5 3267 3147 375 23 0 0 chr1 18849241 18849285 -223815068 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 229 300 80 93 chr1 18849286 18849436 -223814917 - L2 LINE L2 -17 3296 3149 821 243 81 22 chr1 18849547 18849887 -223814466 + MLT1J2 LTR MaLR 67 450 0 316 236 21 4 chr1 18849986 18850080 -223814273 - MIR SINE MIR -92 116 21 668 221 17 33 chr1 18850741 18850922 -223813431 + MIR SINE MIR 14 191 -71 215 265 255 0 chr1 18850957 18851055 -223813298 - MIR3 SINE MIR -4 204 82 999 231 144 48 chr1 18851397 18851730 -223812623 - MLT1A1 LTR MaLR 0 365 1 246 81 0 0 chr1 18852620 18852657 -223811696 + (CA)n Simple_repeat Simple_repeat 2 38 0 352 258 158 0 chr1 18852662 18852821 -223811532 + MIR SINE MIR 14 192 -63 473 286 128 19 chr1 18853078 18853344 -223811009 + L2 LINE L2 3015 3309 -4 377 302 22 14 chr1 18853468 18853526 -223810827 - MIR SINE MIR 0 208 152 1785 157 0 20 chr1 18853526 18853825 -223810528 - AluJb SINE Alu -19 293 1 377 302 22 14 chr1 18853825 18853929 -223810424 - MIR SINE MIR -56 152 44 411 289 48 66 chr1 18853984 18854257 -223810096 + L2 LINE L2 2961 3228 -85 350 264 33 0 chr1 18854263 18854354 -223809999 - MIR SINE MIR -55 153 60 255 355 13 39 chr1 18854952 18855107 -223809246 + MIR3 SINE MIR 37 187 -21 645 292 28 14 chr1 18855629 18855845 -223808508 + L2 LINE L2 3095 3313 0 208 295 16 0 chr1 18856027 18856088 -223808265 - L2 LINE L2 -8 3264 3203 212 297 54 0 chr1 18856098 18856172 -223808181 + L2 LINE L2 3194 3271 -1 * 240 294 106 25 chr1 18856164 18856324 -223808029 - L2 LINE L2 -234 3038 2866 684 307 39 22 chr1 18856943 18857200 -223807153 + MIR SINE MIR 4 262 0 649 317 51 68 chr1 18857600 18858070 -223806283 + L2 LINE L2 2806 3267 -5 251 338 184 37 chr1 18858268 18858404 -223805949 - MIR3 SINE MIR -36 172 17 2212 103 0 19 chr1 18858519 18858831 -223805522 + AluSx SINE Alu 1 306 -6 2137 112 30 0 chr1 18858955 18859258 -223805095 + AluSx SINE Alu 1 312 0 288 271 42 42 chr1 18860832 18860928 -223803425 - MIR SINE MIR -54 208 113 503 291 183 8 chr1 18860934 18861175 -223803178 + LTR33 LTR ERVL 1 283 -238 425 268 116 6 chr1 18861207 18861371 -223802982 + LTR33 LTR ERVL 338 519 -2 1253 242 43 39 chr1 18861456 18861894 -223802459 + MER113 DNA MER1_type? 5 444 -77 503 216 123 98 chr1 18861944 18862148 -223802205 + MER3 DNA MER1_type 1 209 0 427 308 17 0 chr1 18862150 18862270 -223802083 + L2 LINE L2 3191 3312 -1 351 113 0 0 chr1 18862281 18862334 -223802019 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 419 150 0 12 chr1 18862495 18862575 -223801778 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 180 0 0 0 chr1 18863091 18863111 -223801242 + (CAGCC)n Simple_repeat Simple_repeat 4 23 0 362 252 10 58 chr1 18863560 18863663 -223800690 + MIR3 SINE MIR 105 202 -6 236 415 36 13 chr1 18863814 18864038 -223800315 - MIR SINE MIR -12 250 22 189 329 118 0 chr1 18864554 18864639 -223799714 + L2 LINE L2 2920 3014 -258 239 297 25 22 chr1 18864978 18865070 -223799283 - MIR SINE MIR -48 160 66 577 247 87 0 chr1 18865164 18865314 -223799039 + MER63 DNA MER1_type 1 789 -273 498 300 105 11 chr1 18865320 18865510 -223798843 + MIR SINE MIR 45 252 -10 716 217 0 6 chr1 18865513 18865693 -223798660 + CT-rich Low_complexity Low_complexity 1 179 0 247 259 12 49 chr1 18865955 18866036 -223798317 - L2 LINE L2 0 3272 3195 241 312 210 7 chr1 18866385 18866523 -223797830 + MIR SINE MIR 79 244 -18 237 296 135 27 chr1 18866607 18866791 -223797562 + MIR SINE MIR 11 212 -42 184 324 14 14 chr1 18866888 18866959 -223797394 - L3b LINE CR1 -172 1411 1341 275 245 157 29 chr1 18867061 18867163 -223797190 - L2 LINE L2 -12 3260 3146 220 305 12 24 chr1 18868423 18868505 -223795848 + GA-rich Low_complexity Low_complexity 3 83 0 642 332 36 5 chr1 18868798 18869021 -223795332 + MIR SINE MIR 1 230 -32 405 328 33 0 chr1 18869078 18869200 -223795153 + L2 LINE L2 3188 3313 0 194 284 111 0 chr1 18869664 18869745 -223794608 + MIR SINE MIR 96 185 -77 270 0 0 0 chr1 18872200 18872230 -223792123 + (CA)n Simple_repeat Simple_repeat 2 31 0 186 43 0 0 chr1 18872693 18872716 -223791637 + (CA)n Simple_repeat Simple_repeat 1 23 0 213 167 37 0 chr1 18872768 18872822 -223791531 + (CA)n Simple_repeat Simple_repeat 2 57 0 218 116 23 0 chr1 18873101 18873144 -223791209 + (CGG)n Simple_repeat Simple_repeat 2 45 0 220 169 0 31 chr1 18873462 18873527 -223790826 + CT-rich Low_complexity Low_complexity 1 63 0 336 83 0 0 chr1 18874184 18874232 -223790121 + (CA)n Simple_repeat Simple_repeat 2 49 0 261 0 0 0 chr1 18874885 18874914 -223789439 + (T)n Simple_repeat Simple_repeat 1 29 0 242 146 24 0 chr1 18875722 18875763 -223788590 + L2 LINE L2 3254 3295 -18 199 256 0 0 chr1 18875729 18875768 -223788585 + MIR SINE MIR 217 255 -7 * 312 70 0 0 chr1 18875768 18875811 -223788542 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 206 238 48 0 chr1 18875822 18875885 -223788468 + L2 LINE L2 3184 3249 -23 664 298 45 16 chr1 18876635 18876877 -223787476 - MIR SINE MIR 0 262 14 279 245 0 0 chr1 18876897 18876991 -223787362 + (CA)n Simple_repeat Simple_repeat 1 94 0 528 255 6 0 chr1 18877040 18877403 -223786950 + (CA)n Simple_repeat Simple_repeat 1 365 0 269 235 0 10 chr1 18877458 18877560 -223786793 + (CA)n Simple_repeat Simple_repeat 2 102 0 356 275 33 8 chr1 18877603 18877723 -223786630 - MIR SINE MIR -52 210 88 207 194 0 0 chr1 18877805 18877841 -223786512 + CT-rich Low_complexity Low_complexity 1 36 0 384 262 0 19 chr1 18878272 18878379 -223785974 - MER103 DNA DNA 0 166 62 512 333 49 11 chr1 18878616 18878848 -223785505 - MIR SINE MIR -12 250 11 465 369 137 10 chr1 18879005 18879398 -223784955 + L2 LINE L2 2827 3269 -3 313 182 20 20 chr1 18879427 18879526 -223784827 + (TGGA)n Simple_repeat Simple_repeat 1 99 0 243 326 0 0 chr1 18879539 18879625 -223784728 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 733 149 22 28 chr1 18879832 18880013 -223784340 + GA-rich Low_complexity Low_complexity 1 180 0 408 252 168 19 chr1 18880024 18880179 -223784174 + MIR SINE MIR 81 258 -4 252 272 62 25 chr1 18881162 18881243 -223783110 + MIR3 SINE MIR 93 176 -32 280 290 138 22 chr1 18881340 18881564 -223782789 - L2 LINE L2 -196 3076 2827 287 278 93 0 chr1 18882235 18882332 -223782021 - L2 LINE L2 -13 3259 3154 208 345 53 9 chr1 18882660 18882773 -223781580 + L2 LINE L2 2715 2832 -482 215 275 29 14 chr1 18882926 18882995 -223781358 + L2 LINE L2 2977 3046 -226 1908 193 112 0 chr1 18883087 18883470 -223780883 - MSTB LTR MaLR 0 426 1 759 185 6 21 chr1 18883487 18883499 -223780854 + GA-rich Low_complexity Low_complexity 1 12 -398 687 84 0 0 chr1 18883499 18883594 -223780759 + (GAAA)n Simple_repeat Simple_repeat 4 98 0 759 185 6 21 chr1 18883594 18883904 -223780449 + GA-rich Low_complexity Low_complexity 12 410 0 418 347 95 16 chr1 18884451 18884820 -223779533 + L2 LINE L2 2855 3252 -20 294 331 110 47 chr1 18885799 18886261 -223778092 + L2 LINE L2 2554 3037 -235 195 317 33 17 chr1 18886418 18886478 -223777875 + L2 LINE L2 3211 3271 -1 565 317 50 72 chr1 18886574 18887139 -223777214 + L2 LINE L2 2717 3272 0 1919 130 173 35 chr1 18887187 18887360 -223776993 + MSTA LTR MaLR 1 149 -279 2001 96 13 32 chr1 18887360 18887674 -223776679 + AluSc SINE Alu 1 308 -1 1919 130 173 35 chr1 18887674 18887876 -223776477 + MSTA LTR MaLR 149 428 0 214 264 78 39 chr1 18888355 18888484 -223775869 - MIR SINE MIR -43 219 86 736 251 175 52 chr1 18888798 18889124 -223775229 + MLT1J2 LTR MaLR 85 450 0 412 354 17 6 chr1 18889267 18889442 -223774911 - MIR3 SINE MIR -15 193 17 289 273 74 50 chr1 18889775 18889968 -223774385 + MIR SINE MIR 16 216 -46 472 370 19 14 chr1 18890030 18890246 -223774107 + MIR SINE MIR 13 229 -33 1838 149 0 14 chr1 18891225 18891537 -223772816 + AluSx SINE Alu 1 308 0 1141 204 14 5 chr1 18891557 18891773 -223772580 + MER20 DNA MER1_type 2 219 0 2030 126 0 22 chr1 18892635 18892952 -223771401 + AluSg SINE Alu 1 310 0 190 286 234 0 chr1 18893097 18893174 -223771179 + MIR SINE MIR 117 211 -51 1268 225 80 46 chr1 18893235 18893671 -223770682 - L1ME3 LINE L1 -11 6151 5701 2096 60 7 53 chr1 18893698 18893998 -223770355 + AluY SINE Alu 1 286 -25 180 0 0 0 chr1 18893998 18894018 -223770335 + (TA)n Simple_repeat Simple_repeat 2 21 0 2135 222 117 6 chr1 18894987 18895533 -223768820 + MLT1E2 LTR MaLR 20 626 0 996 277 72 40 chr1 18895548 18895826 -223768527 + L2 LINE L2 2679 2947 -366 1891 159 3 3 chr1 18895826 18896127 -223768226 - AluJo SINE Alu -11 301 1 996 277 72 40 chr1 18896127 18896441 -223767912 + L2 LINE L2 2947 3292 -21 240 224 60 26 chr1 18897075 18897191 -223767162 - L1ME4a LINE L1 -9 6112 5993 374 149 21 21 chr1 18897198 18897292 -223767061 + CT-rich Low_complexity Low_complexity 1 94 0 753 251 90 5 chr1 18898054 18898265 -223766088 + MIR SINE MIR 17 245 -17 217 368 97 0 chr1 18898291 18898405 -223765948 - MIR SINE MIR -26 236 112 579 239 75 45 chr1 18898412 18898613 -223765740 + MER58C DNA MER1_type 7 213 -2 1956 128 0 0 chr1 18898785 18899095 -223765258 + AluSx SINE Alu 1 310 0 2029 145 82 20 chr1 18899611 18899794 -223764559 + THE1C LTR MaLR 1 171 -204 222 37 0 0 chr1 18899794 18899821 -223764532 + (TC)n Simple_repeat Simple_repeat 1 27 0 2029 145 82 20 chr1 18899821 18899989 -223764364 + THE1C LTR MaLR 171 374 -1 1363 217 104 30 chr1 18901638 18902071 -223762282 + MLT1C LTR MaLR 3 467 0 246 360 96 28 chr1 18902099 18902277 -223762076 - MIR SINE MIR -25 237 48 371 344 46 0 chr1 18903017 18903168 -223761185 - MIR SINE MIR -58 204 47 202 293 0 0 chr1 18904402 18904460 -223759893 - MIR SINE MIR -115 147 90 732 249 101 18 chr1 18904528 18904745 -223759608 - MIR SINE MIR -6 256 22 272 225 25 38 chr1 18904948 18905028 -223759325 - MIR SINE MIR -84 124 46 686 248 32 12 chr1 18905566 18905810 -223758543 + MIR SINE MIR 5 254 -8 199 316 36 72 chr1 18906450 18906589 -223757764 + L2 LINE L2 3025 3158 -114 202 300 93 52 chr1 18906677 18906947 -223757406 - L2 LINE L2 -32 3240 2960 280 278 35 35 chr1 18907103 18907218 -223757135 + MIR3 SINE MIR 3 117 -91 2176 147 23 0 chr1 18907239 18907587 -223756766 + THE1B LTR MaLR 1 356 -8 1599 226 68 14 chr1 18907624 18908062 -223756291 + MLT1C LTR MaLR 6 467 0 184 316 51 25 chr1 18908367 18908446 -223755907 - L3 LINE CR1 -1 1576 1496 3089 76 25 5 chr1 18908600 18909035 -223755318 + MLT2A1 LTR ERVL 1 444 0 357 309 158 19 chr1 18909038 18909509 -223754844 + L2 LINE L2 2743 3313 0 251 315 61 48 chr1 18909547 18909712 -223754641 - MIR SINE MIR -56 206 40 416 293 168 21 chr1 18909910 18910101 -223754252 - MIR SINE MIR -22 240 22 307 284 116 19 chr1 18910150 18910305 -223754048 - MIR SINE MIR -70 192 23 363 270 113 9 chr1 18911071 18911186 -223753167 - MIR SINE MIR -56 206 80 243 261 104 30 chr1 18911909 18912043 -223752310 - MIR SINE MIR -10 252 109 288 285 139 0 chr1 18912162 18912306 -223752047 - LTR16A LTR ERVL -174 276 113 237 150 0 0 chr1 18912372 18912412 -223751941 + MER1A DNA MER1_type 2 41 -486 3318 118 22 2 chr1 18912539 18913030 -223751323 + MER1A DNA MER1_type 29 529 0 191 299 89 25 chr1 18913198 18913355 -223750998 + MIR3 SINE MIR 38 204 -4 621 267 78 14 chr1 18913517 18913734 -223750619 + MIR SINE MIR 13 243 -19 213 196 0 0 chr1 18914431 18914477 -223749876 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 280 301 24 0 chr1 18914479 18914562 -223749791 - L2 LINE L2 -1 3271 3187 724 135 5 135 chr1 18914566 18914713 -223749640 + MLT1A2 LTR MaLR 1 121 -253 1939 160 33 30 chr1 18914713 18915076 -223749277 + THE1B LTR MaLR 1 364 0 724 135 5 135 chr1 18915076 18915113 -223749240 + MLT1A2 LTR MaLR 121 161 -213 237 83 0 0 chr1 18915136 18915172 -223749181 + (TC)n Simple_repeat Simple_repeat 2 37 0 781 229 5 32 chr1 18915178 18915366 -223748987 + MLT1A2 LTR MaLR 181 363 -11 256 361 129 13 chr1 18915691 18916001 -223748352 - L2 LINE L2 -529 2785 2440 256 279 68 60 chr1 18916389 18916574 -223747779 - MIR SINE MIR -39 223 41 * 873 227 36 23 chr1 18916572 18916792 -223747561 - MIR SINE MIR -32 230 8 225 235 235 0 chr1 18917207 18917309 -223747044 + MIR3 SINE MIR 11 136 -72 560 225 150 25 chr1 18917332 18917532 -223746821 - MIR SINE MIR -1 261 37 243 355 8 24 chr1 18917905 18918029 -223746324 + L3b LINE CR1 1146 1267 -316 396 279 132 0 chr1 18918238 18918367 -223745986 - MIR SINE MIR -114 148 3 406 145 48 124 chr1 18918671 18918816 -223745537 + MLT1H LTR MaLR 406 539 -10 273 75 0 0 chr1 18919702 18919742 -223744611 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 2254 128 0 7 chr1 18919912 18920217 -223744136 + AluSx SINE Alu 1 303 -9 294 294 43 0 chr1 18920376 18920468 -223743885 + MIR SINE MIR 39 134 -128 198 196 36 0 chr1 18920898 18920954 -223743399 - MIR SINE MIR -60 202 145 209 299 45 0 chr1 18921366 18921433 -223742920 - MIR3 SINE MIR -51 157 88 711 266 19 24 chr1 18921478 18921685 -223742668 + MIR SINE MIR 44 249 -13 180 0 0 0 chr1 18922063 18922083 -223742270 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 413 332 89 51 chr1 18922086 18922456 -223741897 - L2 LINE L2 -20 3293 2910 764 186 113 65 chr1 18922763 18923010 -223741343 - ORSL DNA AcHobo -13 262 4 784 246 27 32 chr1 18923791 18924011 -223740342 - MIR SINE MIR 0 262 44 238 300 0 14 chr1 18924243 18924313 -223740040 + CT-rich Low_complexity Low_complexity 3 71 0 396 0 0 0 chr1 18924950 18924994 -223739359 + (CA)n Simple_repeat Simple_repeat 2 45 0 197 170 170 0 chr1 18925350 18925403 -223738950 + MIR SINE MIR 102 163 -99 293 320 75 33 chr1 18925831 18926046 -223738307 - MIR SINE MIR -27 235 2 499 294 19 6 chr1 18927067 18927227 -223737126 - MIR3 SINE MIR -17 191 30 219 333 0 0 chr1 18927315 18927378 -223736975 + MIR SINE MIR 50 112 -150 584 201 137 26 chr1 18927486 18927720 -223736633 - LTR16C LTR ERVL 0 491 232 203 311 48 39 chr1 18928004 18928107 -223736246 + L3b LINE CR1 1342 1445 -138 2258 105 0 3 chr1 18928334 18928629 -223735724 + AluSx SINE Alu 1 294 -18 192 77 0 0 chr1 18928648 18928674 -223735679 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1642 218 21 5 chr1 18928688 18929069 -223735284 + L1ME1 LINE L1 5776 6162 -4 2433 94 3 0 chr1 18929074 18929382 -223734971 - AluY SINE Alu -2 309 1 21 57 0 0 chr1 18929390 18929425 -223734928 + AT_rich Low_complexity Low_complexity 1 35 0 393 272 103 46 chr1 18929496 18929624 -223734729 + MIR SINE MIR 7 151 -111 1683 174 41 46 chr1 18929624 18930016 -223734337 + MLT1B LTR MaLR 1 390 0 393 272 103 46 chr1 18930016 18930082 -223734271 + MIR SINE MIR 151 212 -50 670 277 106 39 chr1 18930165 18930685 -223733668 - MLT1L LTR MaLR -31 584 6 378 320 193 0 chr1 18930711 18930908 -223733445 - MIR SINE MIR -24 238 4 838 259 11 34 chr1 18931647 18931910 -223732443 + MIR SINE MIR 6 262 0 219 343 0 0 chr1 18931910 18931977 -223732376 + MER5A DNA MER1_type 91 157 -32 437 252 161 7 chr1 18933543 18933686 -223730667 + MIR SINE MIR 50 214 -48 215 305 153 8 chr1 18934108 18934226 -223730127 + L3b LINE CR1 1221 1355 -228 446 305 39 26 chr1 18934930 18935084 -223729269 + MIR SINE MIR 41 196 -66 471 298 46 32 chr1 18935789 18936007 -223728346 - MIR SINE MIR -16 246 26 4556 63 3 2 chr1 18936225 18936815 -223727538 - LTR10C LTR ERV1 0 591 1 2055 168 2 45 chr1 18936815 18937215 -223727138 + MLT1B LTR MaLR 8 390 0 3013 43 0 0 chr1 18937268 18937642 -223726711 + L1PA5 LINE L1 5770 6143 -11 681 218 131 51 chr1 18937657 18937932 -223726421 + L1MC/D LINE L1 5291 5587 -2221 324 195 13 52 chr1 18937962 18938116 -223726237 + GA-rich Low_complexity Low_complexity 3 150 0 528 329 12 6 chr1 18938117 18938281 -223726072 + MIR SINE MIR 20 184 -78 830 201 5 10 chr1 18938635 18939016 -223725337 + GA-rich Low_complexity Low_complexity 1 379 0 361 304 0 0 chr1 18939946 18940048 -223724305 + MIR SINE MIR 48 149 -113 340 303 58 19 chr1 18940314 18940469 -223723884 - MIR SINE MIR -48 214 54 252 0 0 0 chr1 18940771 18940799 -223723554 + (GA)n Simple_repeat Simple_repeat 2 29 0 2221 116 26 63 chr1 18941230 18941608 -223722745 + THE1B LTR MaLR 1 364 0 1924 181 55 0 chr1 18942144 18942547 -223721806 - L1MB2 LINE L1 -4 6167 5743 1065 174 62 13 chr1 18942547 18942771 -223721582 - L1MB2 LINE L1 -318 5853 5619 397 304 105 25 chr1 18943754 18944164 -223720189 - L2 LINE L2 -214 3058 2600 545 305 99 3 chr1 18944324 18944786 -223719567 - L2 LINE L2 -250 3063 2560 389 248 9 28 chr1 18945155 18945264 -223719089 - L2 LINE L2 0 3313 3207 1190 276 119 17 chr1 18945293 18945815 -223718538 + MLT1E LTR MaLR 1 575 -18 691 190 127 19 chr1 18945864 18946022 -223718331 + FAM SINE Alu 1 175 0 633 274 6 0 chr1 18946063 18946227 -223718126 - MIR SINE MIR -90 172 8 292 208 115 25 chr1 18946612 18946737 -223717616 - MIR SINE MIR -63 145 8 253 167 21 0 chr1 18946914 18946962 -223717391 + L2 LINE L2 3264 3312 -1 950 153 109 6 chr1 18947161 18947344 -223717009 + MER31A LTR ERV1 1 202 -283 960 149 106 5 chr1 18947345 18947533 -223716820 + MER2 DNA MER2_type 4 210 -135 435 230 77 20 chr1 18947652 18947799 -223716554 + MER31B LTR ERV1 302 651 -10 207 0 0 0 chr1 18947799 18947822 -223716531 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 706 301 61 24 chr1 18948770 18948934 -223715419 - MIR SINE MIR -3 259 82 2150 127 19 24 chr1 18948934 18949311 -223715042 - THE1C LTR MaLR 0 375 1 706 301 61 24 chr1 18949311 18949392 -223714961 - MIR SINE MIR -180 82 5 306 0 0 0 chr1 18949564 18949598 -223714755 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 1817 246 80 29 chr1 18950617 18951171 -223713182 + MLT1E LTR MaLR 15 593 0 290 247 0 14 chr1 18951276 18951349 -223713004 - MIR SINE MIR -121 87 16 2147 162 10 13 chr1 18952394 18952777 -223711576 + MLT1B LTR MaLR 3 384 -6 612 295 14 48 chr1 18952844 18953054 -223711299 + MIR SINE MIR 1 203 -59 329 279 25 0 chr1 18953070 18953149 -223711204 - L2 LINE L2 -2 3270 3190 213 178 0 0 chr1 18953176 18953221 -223711132 + T-rich Low_complexity Low_complexity 1 45 0 214 255 117 82 chr1 18953306 18953502 -223710851 + L2 LINE L2 3051 3253 -19 308 282 81 40 chr1 18953773 18953922 -223710431 - L3 LINE CR1 -6 1571 1417 338 217 79 98 chr1 18954070 18954241 -223710112 - MIR SINE MIR -62 146 34 552 341 29 0 chr1 18954845 18955050 -223709303 + MIR SINE MIR 20 230 -32 235 344 33 33 chr1 18956144 18956266 -223708087 + L3b LINE CR1 1209 1330 -253 331 382 29 0 chr1 18956680 18956850 -223707503 + MIR SINE MIR 85 259 -3 230 140 40 20 chr1 18956979 18957029 -223707324 + C-rich Low_complexity Low_complexity 3 53 0 345 24 0 0 chr1 18957297 18957339 -223707014 + (TG)n Simple_repeat Simple_repeat 2 43 0 396 269 208 0 chr1 18958230 18958379 -223705974 - MER5A DNA MER1_type -6 183 4 272 264 203 25 chr1 18958594 18958757 -223705596 - MIR SINE MIR -6 256 65 471 328 100 13 chr1 18959208 18959437 -223704916 - MIR SINE MIR -8 254 6 531 274 38 6 chr1 18959504 18959661 -223704692 - MIR3 SINE MIR 0 208 47 660 258 70 55 chr1 18960030 18960301 -223704052 + L1MC4a LINE L1 5523 5797 -2011 747 250 31 0 chr1 18960325 18960517 -223703836 + MIR SINE MIR 19 216 -46 2362 99 3 10 chr1 18960550 18960853 -223703500 - AluSq SINE Alu -12 301 1 342 278 104 9 chr1 18960871 18960986 -223703367 + L1MC4a LINE L1 5801 5926 -1882 1110 126 0 19 chr1 18961310 18961469 -223702884 - FRAM SINE Alu -24 152 1 2330 101 0 3 chr1 18961480 18961778 -223702575 - AluSx SINE Alu -15 297 1 2818 171 19 7 chr1 18961787 18962326 -223702027 - L1MB2 LINE L1 -2 6169 5625 222 37 0 0 chr1 18962783 18962810 -223701543 + (TC)n Simple_repeat Simple_repeat 1 27 0 1251 238 127 57 chr1 18963457 18963970 -223700383 - MLT1H LTR MaLR 0 549 1 201 94 0 0 chr1 18964336 18964368 -223699985 + (CAGAGA)n Simple_repeat Simple_repeat 3 34 0 493 271 52 102 chr1 18964370 18964476 -223699877 - L2 LINE L2 -462 2852 2742 2517 49 3 16 chr1 18964476 18964782 -223699571 - AluYb8 SINE Alu -16 302 1 493 271 52 102 chr1 18964782 18965096 -223699257 - L2 LINE L2 -572 2742 2453 774 261 38 38 chr1 18965099 18965337 -223699016 - MIR SINE MIR -10 252 15 194 254 146 62 chr1 18965350 18965480 -223698873 - L2 LINE L2 -865 2449 2309 247 297 36 65 chr1 18965648 18965716 -223698637 + MER5B DNA MER1_type 7 71 -107 1942 175 0 3 chr1 18965716 18966019 -223698334 + AluSx SINE Alu 1 302 -10 247 297 36 65 chr1 18966019 18966088 -223698265 + MER5B DNA MER1_type 71 140 -38 518 319 83 13 chr1 18966514 18966743 -223697610 + MIR SINE MIR 18 262 0 2068 153 0 31 chr1 18966748 18967069 -223697284 - AluJb SINE Alu -1 311 1 214 282 27 27 chr1 18967215 18967325 -223697028 + L2 LINE L2 2866 2975 -339 499 304 52 59 chr1 18967525 18967831 -223696522 - MLT1H LTR MaLR -195 354 51 840 172 32 6 chr1 18967905 18968062 -223696291 + MER20 DNA MER1_type 34 194 -25 202 161 0 32 chr1 18968189 18968251 -223696102 + CT-rich Low_complexity Low_complexity 2 61 0 385 260 110 13 chr1 18969021 18969175 -223695178 + MIR SINE MIR 76 244 -18 291 215 69 132 chr1 18969334 18969478 -223694875 + MER5A DNA MER1_type 54 188 -1 206 231 31 15 chr1 18969969 18970034 -223694319 + L2 LINE L2 3016 3081 -191 1539 221 40 42 chr1 18970500 18971003 -223693350 - MLT1D LTR MaLR -3 502 1 377 292 153 38 chr1 18971011 18971220 -223693133 - MIR SINE MIR -12 250 18 504 202 53 9 chr1 18972446 18972560 -223691793 + L2 LINE L2 3194 3312 -1 333 68 0 0 chr1 18973091 18973135 -223691218 + (CA)n Simple_repeat Simple_repeat 1 44 0 409 320 146 19 chr1 18973242 18973448 -223690905 + MIR SINE MIR 31 262 0 2695 42 0 6 chr1 18973602 18973915 -223690438 + AluY SINE Alu 1 311 0 197 274 9 127 chr1 18974050 18974262 -223690091 - L2 LINE L2 -38 3275 3089 372 269 103 45 chr1 18974292 18974448 -223689905 - MIR SINE MIR -91 171 7 907 314 80 32 chr1 18974451 18974913 -223689440 - LTR16C LTR ERVL 0 491 8 2034 142 13 0 chr1 18975034 18975337 -223689016 - AluSg SINE Alu -3 307 1 323 336 54 13 chr1 18976208 18976313 -223688040 + MIR SINE MIR 58 172 -90 444 115 26 0 chr1 18976313 18976391 -223687962 + MADE1 DNA Mariner 1 80 0 323 336 54 13 chr1 18976391 18976434 -223687919 + MIR SINE MIR 172 212 -50 305 325 20 13 chr1 18976646 18976797 -223687556 - MIR SINE MIR -28 234 83 1807 204 55 20 chr1 18976801 18977241 -223687112 + MLT1C LTR MaLR 1 455 -12 493 345 36 14 chr1 18977877 18978097 -223686256 - MIR SINE MIR -18 244 20 348 332 55 14 chr1 18978680 18978900 -223685453 + L3 LINE CR1 1246 1474 -103 452 222 34 8 chr1 18979952 18980069 -223684284 + MIR SINE MIR 56 175 -87 220 319 39 58 chr1 18980072 18980279 -223684074 - MIR SINE MIR -27 235 33 243 0 0 0 chr1 18980576 18980603 -223683750 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 254 245 47 57 chr1 18980710 18980816 -223683537 + MIR SINE MIR 89 193 -69 196 211 0 0 chr1 18981418 18981456 -223682897 - L2 LINE L2 -4 3268 3231 445 338 158 27 chr1 18981506 18982166 -223682187 - L2 LINE L2 -556 2758 2013 1783 161 54 0 chr1 18982177 18982457 -223681896 + AluSx SINE Alu 1 295 -17 370 306 82 31 chr1 18982655 18982851 -223681502 + MIR SINE MIR 51 256 -6 510 258 141 44 chr1 18984504 18984802 -223679551 - L2 LINE L2 -1 3271 2945 404 308 94 9 chr1 18985193 18985417 -223678936 + MIR SINE MIR 20 262 0 372 217 19 4 chr1 18985994 18986092 -223678261 - MIR SINE MIR -62 146 63 474 289 53 0 chr1 18986981 18987168 -223677185 + L2 LINE L2 2461 2657 -657 834 279 67 13 chr1 18987177 18987553 -223676800 + L2 LINE L2 2816 3211 -102 1540 214 58 16 chr1 18987576 18988005 -223676348 - L1MDa LINE L1 -5083 1457 1011 436 168 0 59 chr1 18988182 18988208 -223676145 + L2 LINE L2 3218 3244 -69 2017 130 144 8 chr1 18988208 18988584 -223675769 + MSTA LTR MaLR 1 427 -1 436 168 0 59 chr1 18988584 18988658 -223675695 + L2 LINE L2 3244 3312 -1 382 306 140 11 chr1 18988676 18988862 -223675491 - MIR SINE MIR -33 229 20 237 274 16 0 chr1 18990120 18990182 -223674171 + MER5A DNA MER1_type 44 106 -83 337 326 121 8 chr1 18990426 18990558 -223673795 + MIR SINE MIR 106 252 -10 526 281 81 41 chr1 18990611 18990832 -223673521 - MIR SINE MIR -17 245 16 288 226 26 17 chr1 18991644 18991730 -223672623 + MIR SINE MIR 111 196 -66 211 329 35 0 chr1 18992364 18992449 -223671904 - MIR SINE MIR -3 259 172 541 251 25 52 chr1 18992452 18992697 -223671656 + MLT1J2 LTR MaLR 1 237 -172 324 181 0 60 chr1 18992730 18992813 -223671540 + MLT1J2 LTR MaLR 373 450 0 209 293 35 0 chr1 18992833 18992891 -223671462 - MIR SINE MIR -112 150 91 2267 169 21 7 chr1 18993714 18994134 -223670219 + MSTB LTR MaLR 1 426 0 256 313 12 0 chr1 18994232 18994312 -223670041 - MIR3 SINE MIR -9 199 119 2190 134 0 0 chr1 18994347 18994637 -223669716 + AluSx SINE Alu 1 290 -22 436 234 32 24 chr1 18994771 18994912 -223669441 - MIR SINE MIR -64 144 2 208 283 0 0 chr1 18995149 18995202 -223669151 + L2 LINE L2 3261 3313 0 1086 89 0 19 chr1 18995590 18995747 -223668606 - L1PA10 LINE L1 -8 6160 6007 236 64 6 0 chr1 18995747 18995785 -223668568 + L1PA10 LINE L1 5941 5980 -175 330 246 79 26 chr1 18996019 18996133 -223668220 + MIR3 SINE MIR 35 154 -54 445 176 88 123 chr1 18996457 18996565 -223667788 - MIR SINE MIR 0 262 161 1409 154 9 110 chr1 18996565 18996884 -223667469 - AluJo SINE Alu -13 289 3 445 176 88 123 chr1 18996884 18996945 -223667408 - MIR SINE MIR -101 161 99 284 301 62 20 chr1 18997316 18997462 -223666891 + MIR3 SINE MIR 9 160 -48 186 43 0 0 chr1 18997547 18997570 -223666783 + (TG)n Simple_repeat Simple_repeat 1 23 0 459 273 23 41 chr1 18997582 18997754 -223666599 + MIR3 SINE MIR 7 175 -33 464 205 293 5 chr1 18997903 18998108 -223666245 - ORSL DNA AcHobo 0 275 12 1269 242 51 59 chr1 18998234 18998742 -223665611 + MLT1D LTR MaLR 1 504 -1 279 0 0 0 chr1 18998975 18999006 -223665347 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6721 57 0 0 chr1 18999006 18999943 -223664410 - L1PA6 LINE L1 -18 6136 5201 356 243 189 0 chr1 19000618 19000729 -223663624 + MIR SINE MIR 94 225 -37 261 343 95 36 chr1 19000774 19001133 -223663220 - L2 LINE L2 0 3272 2893 342 0 0 0 chr1 19001323 19001361 -223662992 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 285 279 87 10 chr1 19001380 19001484 -223662869 - L2 LINE L2 -52 3220 3109 243 314 0 57 chr1 19001553 19001677 -223662676 + MIR SINE MIR 13 129 -133 922 344 39 11 chr1 19001704 19002059 -223662294 - LTR16A LTR ERVL -58 392 28 285 271 126 12 chr1 19002259 19002428 -223661925 - L2 LINE L2 -336 2977 2798 426 269 88 96 chr1 19002535 19002795 -223661558 - MIR SINE MIR -1 261 4 980 275 27 52 chr1 19003375 19003552 -223660801 + L2 LINE L2 2881 3061 -252 1345 234 122 36 chr1 19003552 19004021 -223660332 + MLT1J LTR MaLR 3 511 0 980 275 27 52 chr1 19004021 19004286 -223660067 + L2 LINE L2 3061 3312 -1 227 311 131 16 chr1 19004289 19004411 -223659942 - MIR SINE MIR -19 243 108 1102 200 29 33 chr1 19004615 19004663 -223659690 + L1MB7 LINE L1 5286 5333 -851 1796 158 3 16 chr1 19004663 19004967 -223659386 + AluJb SINE Alu 1 300 -12 1102 200 29 33 chr1 19004967 19005301 -223659052 + L1MB7 LINE L1 5333 5667 -517 2239 100 6 3 chr1 19005301 19005612 -223658741 + AluSp SINE Alu 1 312 -1 1102 200 29 33 chr1 19005612 19006017 -223658336 + L1MB7 LINE L1 5667 6175 -9 1816 150 10 19 chr1 19006139 19006452 -223657901 + AluJo SINE Alu 1 310 -2 546 266 128 15 chr1 19006459 19006662 -223657691 + MIR SINE MIR 31 256 -6 380 333 68 42 chr1 19006727 19006964 -223657389 - L2 LINE L2 0 3272 3030 211 259 17 17 chr1 19007087 19007145 -223657208 - L3 LINE CR1 -3 1574 1517 385 323 37 12 chr1 19007565 19007729 -223656624 - MIR SINE MIR -91 171 4 307 284 90 47 chr1 19008349 19008564 -223655789 - MIR SINE MIR -35 227 4 2066 126 10 0 chr1 19008771 19009065 -223655288 - AluSx SINE Alu -15 297 1 347 269 91 91 chr1 19009123 19009298 -223655055 + MIR SINE MIR 86 260 -2 364 191 0 56 chr1 19010225 19010314 -223654039 + MIR SINE MIR 68 151 -111 2055 104 0 0 chr1 19010958 19011236 -223653117 + AluSx SINE Alu 26 303 -9 417 90 0 0 chr1 19011351 19011418 -223652935 + (TC)n Simple_repeat Simple_repeat 1 67 0 255 264 0 0 chr1 19011488 19011579 -223652774 + (TG)n Simple_repeat Simple_repeat 2 92 0 2962 171 16 35 chr1 19012233 19012246 -223652107 + MER74A LTR ERVL 1 13 -545 1837 159 3 13 chr1 19012246 19012548 -223651805 - AluJo SINE Alu -13 299 1 2962 171 16 35 chr1 19012548 19013103 -223651250 + MER74A LTR ERVL 13 558 0 265 378 55 0 chr1 19013490 19013617 -223650736 + L2 LINE L2 3139 3272 0 246 288 31 69 chr1 19014243 19014403 -223649950 + MIR SINE MIR 95 248 -14 422 294 0 0 chr1 19014538 19014647 -223649706 + MIR SINE MIR 109 217 -45 204 283 66 75 chr1 19014796 19014902 -223649451 - MER5A DNA MER1_type -24 165 61 2143 130 0 0 chr1 19014902 19015201 -223649152 + AluSx SINE Alu 1 299 -13 1575 102 37 0 chr1 19015203 19015419 -223648934 + AluSg/x SINE Alu 83 306 -4 766 114 0 21 chr1 19015448 19015588 -223648765 + (GGAA)n Simple_repeat Simple_repeat 2 138 0 204 40 0 0 chr1 19015588 19015613 -223648740 + (CAGG)n Simple_repeat Simple_repeat 1 25 0 253 290 40 10 chr1 19015835 19015935 -223648418 + MIR SINE MIR 94 196 -66 349 344 19 19 chr1 19016419 19016579 -223647774 + Charlie8 DNA MER1_type 26 185 -2232 602 289 137 0 chr1 19016814 19017018 -223647335 - MIR SINE MIR -3 259 28 187 262 0 71 chr1 19021450 19021534 -223642819 + MIR SINE MIR 111 188 -74 311 317 50 31 chr1 19022347 19022508 -223641845 - MER117 DNA MER1_type -2 195 32 668 262 129 52 chr1 19022896 19023182 -223641171 - L2 LINE L2 0 3313 3006 348 266 55 18 chr1 19073702 19073811 -223590542 + MIR SINE MIR 91 203 -59 2832 90 3 0 chr1 19073972 19074326 -223590027 - THE1A LTR MaLR 0 355 1 832 249 119 57 chr1 19074472 19074950 -223589403 - MER34 LTR ERV1 -4 538 26 1799 134 49 14 chr1 19074950 19075234 -223589119 - AluJo SINE Alu -18 294 1 832 249 119 57 chr1 19075234 19075261 -223589092 - MER34 LTR ERV1 -516 26 2 280 227 47 47 chr1 19075569 19075697 -223588656 - LTR16C LTR ERVL -1 490 363 * 3908 174 96 1 chr1 19075660 19076408 -223587945 + LTR1B LTR ERV1 8 826 0 689 225 86 44 chr1 19076408 19076689 -223587664 - LTR16C LTR ERVL -74 417 98 248 232 0 0 chr1 19076867 19076923 -223587430 - L1MC4 LINE L1 0 8042 7987 3821 209 66 15 chr1 19076925 19077839 -223586514 - L1MC4 LINE L1 -142 7900 6941 271 250 0 0 chr1 19077884 19077898 -223586455 - LTR16A1 LTR ERVL -135 322 309 2369 83 0 3 chr1 19077898 19078198 -223586155 + AluY SINE Alu 1 299 -12 271 250 0 0 chr1 19078198 19078243 -223586110 - LTR16A1 LTR ERVL -147 310 263 1075 229 19 0 chr1 19078447 19078661 -223585692 - MER58A DNA MER1_type -6 218 1 1032 199 4 61 chr1 19078967 19079126 -223585227 + L1MB7 LINE L1 4935 5102 -1044 2268 64 0 3 chr1 19079126 19079571 -223584782 + AluY SINE Alu 1 444 0 1032 199 4 61 chr1 19079571 19079669 -223584684 + L1MB7 LINE L1 5102 5179 -967 2158 172 42 8 chr1 19079669 19080053 -223584300 + MLT2C1 LTR ERVL 1 397 0 1032 199 4 61 chr1 19080053 19080070 -223584283 + L1MB7 LINE L1 5179 5195 -951 2048 132 6 13 chr1 19080071 19080382 -223583971 + AluSc SINE Alu 1 309 0 410 125 0 14 chr1 19080399 19080471 -223583882 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 4599 164 65 13 chr1 19080471 19081400 -223582953 + L1MB7 LINE L1 5176 6155 -29 2109 157 29 35 chr1 19081400 19081777 -223582576 - THE1C LTR MaLR 0 375 1 4599 164 65 13 chr1 19081777 19081809 -223582544 + L1MB7 LINE L1 6155 6184 0 873 247 160 34 chr1 19081882 19082238 -223582115 + MLT1J LTR MaLR 53 453 -58 679 226 89 104 chr1 19082263 19082500 -223581853 - MLT1G3 LTR MaLR -70 525 210 1439 161 24 134 chr1 19082500 19082835 -223581518 - AluJb SINE Alu -1 301 4 679 226 89 104 chr1 19082835 19082967 -223581386 - MLT1G3 LTR MaLR -385 210 78 315 194 0 0 chr1 19082967 19083039 -223581314 - L1MEc LINE L1 -3515 2700 2629 1468 218 49 137 chr1 19083050 19083621 -223580732 - MLT1D LTR MaLR -2 503 1 1077 226 84 10 chr1 19083621 19083918 -223580435 - L1MEc LINE L1 -3591 2624 2306 796 112 7 132 chr1 19083920 19084072 -223580281 + AluJo SINE Alu 2 134 -178 4082 147 63 6 chr1 19084081 19084760 -223579593 + L1PA16 LINE L1 5433 6150 -16 2485 260 53 31 chr1 19084760 19085773 -223578580 - L1MEc LINE L1 -4044 2352 1317 1842 145 7 3 chr1 19085773 19086056 -223578297 + AluJb SINE Alu 11 294 -18 389 290 126 33 chr1 19086101 19086284 -223578069 + MIR SINE MIR 57 256 -6 216 0 0 0 chr1 19086981 19087005 -223577348 + (A)n Simple_repeat Simple_repeat 1 24 0 2249 39 0 0 chr1 19087063 19087363 -223576990 - AluY SINE Alu 0 328 29 474 39 39 0 chr1 19087925 19088002 -223576351 + (TG)n Simple_repeat Simple_repeat 2 81 0 339 224 31 20 chr1 19088944 19089042 -223575311 + MIR SINE MIR 81 179 -83 206 239 14 0 chr1 19089090 19089161 -223575192 + (ATG)n Simple_repeat Simple_repeat 1 72 0 482 343 5 25 chr1 19089332 19089533 -223574820 - MIR SINE MIR -46 216 20 1850 132 10 51 chr1 19089946 19090241 -223574112 + AluSc SINE Alu 1 283 -26 285 230 59 20 chr1 19090587 19090793 -223573560 - MLT1G LTR MaLR -249 300 22 4243 234 94 39 chr1 19091509 19092810 -223571543 + L1MB7 LINE L1 307 1536 -5289 2180 128 0 3 chr1 19092810 19093114 -223571239 + AluSc SINE Alu 1 303 -6 4243 234 94 39 chr1 19093114 19093652 -223570701 + L1MB7 LINE L1 1536 2043 -4782 487 145 0 0 chr1 19093652 19093728 -223570625 + MADE1 DNA Mariner 4 79 -1 4243 234 94 39 chr1 19093728 19093760 -223570593 + L1MB7 LINE L1 2043 2072 -4753 7212 132 54 20 chr1 19093760 19094951 -223569402 - Tigger3b DNA MER2_type 0 1231 1 4243 234 94 39 chr1 19094951 19095322 -223569031 + L1MB7 LINE L1 2072 2802 -4023 * 4769 169 56 15 chr1 19095319 19097068 -223567285 + L1MB7 LINE L1 4857 6682 0 1846 296 91 43 chr1 19097072 19097221 -223567132 + L1ME3A LINE L1 3961 4101 -2069 779 31 0 31 chr1 19097221 19097318 -223567035 - L1PA8 LINE L1 -1 6171 6078 1846 296 91 43 chr1 19097318 19098115 -223566238 + L1ME3A LINE L1 4101 4858 -1312 4143 90 19 5 chr1 19098115 19098679 -223565674 - L1PB2 LINE L1 0 6151 5580 1846 296 91 43 chr1 19098679 19099019 -223565334 + L1ME3A LINE L1 4858 5180 -990 2091 134 13 0 chr1 19099019 19099326 -223565027 + AluSx SINE Alu 1 311 -1 1846 296 91 43 chr1 19099326 19099911 -223564442 + L1ME3A LINE L1 5180 5947 -223 426 195 0 0 chr1 19100153 19100240 -223564113 + CT-rich Low_complexity Low_complexity 1 87 0 399 277 132 60 chr1 19100374 19100609 -223563744 - L2 LINE L2 -217 3055 2804 585 174 35 9 chr1 19101209 19101324 -223563029 + ORSL DNA AcHobo 1 118 -157 864 131 69 14 chr1 19101449 19101594 -223562759 + ORSL DNA AcHobo 119 271 -4 429 20 0 0 chr1 19102295 19102345 -223562008 + (CA)n Simple_repeat Simple_repeat 2 51 0 1061 178 27 5 chr1 19102623 19102808 -223561545 - MER5A DNA MER1_type 0 189 1 889 113 21 103 chr1 19102905 19103099 -223561254 - L1PA6 LINE L1 0 6154 5977 278 304 43 29 chr1 19103357 19103495 -223560858 - MIR SINE MIR -117 145 6 367 267 156 75 chr1 19103502 19103873 -223560480 - MLT1L LTR MaLR 0 615 215 197 292 0 97 chr1 19104085 19104157 -223560196 - L2 LINE L2 0 3272 3208 494 267 59 7 chr1 19104159 19104294 -223560059 + MIR SINE MIR 2 143 -119 21 0 0 0 chr1 19104603 19104624 -223559729 + GC_rich Low_complexity Low_complexity 1 21 0 1672 173 3 7 chr1 19104703 19104998 -223559355 + AluJb SINE Alu 1 294 -18 290 209 35 35 chr1 19104999 19105085 -223559268 - MIR SINE MIR -93 169 84 599 236 116 33 chr1 19105729 19105824 -223558529 - MIR SINE MIR 0 262 176 2105 157 36 33 chr1 19105824 19106187 -223558166 + THE1B LTR MaLR 1 364 0 599 236 116 33 chr1 19106187 19106332 -223558021 - MIR SINE MIR -86 176 2 282 264 81 0 chr1 19107411 19107498 -223556855 - MIR SINE MIR -8 254 161 * 638 352 97 26 chr1 19107497 19108139 -223556214 + L2 LINE L2 2239 2925 -389 2071 214 30 28 chr1 19108400 19108900 -223555453 + MLT1D LTR MaLR 1 501 -4 336 206 0 0 chr1 19108908 19108971 -223555382 - MIR SINE MIR -124 138 76 393 314 118 10 chr1 19109504 19109708 -223554645 - MIR SINE MIR -17 245 20 307 210 3 38 chr1 19110279 19110364 -223553989 + MLT1F LTR MaLR 472 542 0 2466 65 0 0 chr1 19110670 19110976 -223553377 + AluY SINE Alu 1 306 -5 629 315 110 27 chr1 19111307 19111716 -223552637 + MLT1J LTR MaLR 8 450 -61 415 305 80 33 chr1 19112200 19112413 -223551940 + MIR SINE MIR 28 250 -12 213 273 45 80 chr1 19112662 19112750 -223551603 + L2 LINE L2 3182 3266 -6 374 320 74 11 chr1 19113042 19113217 -223551136 + MIR3 SINE MIR 20 205 -3 263 298 126 7 chr1 19113486 19113637 -223550716 - L2 LINE L2 -3 3269 3101 305 176 0 0 chr1 19113722 19113773 -223550580 - MER81 DNA DNA -62 52 2 273 180 0 49 chr1 19114901 19114962 -223549391 - L2 LINE L2 -2 3311 3254 211 211 0 19 chr1 19115062 19115114 -223549239 + CT-rich Low_complexity Low_complexity 2 52 0 792 333 20 4 chr1 19115124 19115376 -223548977 - MIR SINE MIR -5 257 2 466 326 27 11 chr1 19115530 19115714 -223548639 + MIR SINE MIR 47 233 -29 795 231 74 0 chr1 19115749 19115952 -223548401 + LTR16A1 LTR ERVL 207 424 -33 1955 130 0 0 chr1 19116085 19116362 -223547991 + AluSq SINE Alu 1 277 -36 756 61 0 0 chr1 19116363 19116461 -223547892 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 1224 59 0 32 chr1 19116461 19116647 -223547706 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 255 224 17 0 chr1 19117171 19117229 -223547124 - L2 LINE L2 0 3313 3255 492 291 63 26 chr1 19117299 19117524 -223546829 + MIR SINE MIR 22 259 -3 193 348 95 40 chr1 19117604 19117900 -223546453 + L2 LINE L2 2553 2864 -450 1049 244 62 12 chr1 19118076 19118396 -223545957 - MLT1C LTR MaLR -128 339 4 406 259 82 10 chr1 19118402 19118546 -223545807 - MIR SINE MIR -58 150 6 495 323 69 11 chr1 19118590 19118779 -223545574 - MIR SINE MIR -53 209 10 222 200 0 0 chr1 19118966 19119011 -223545342 + (CA)n Simple_repeat Simple_repeat 1 45 0 232 281 0 0 chr1 19119628 19119685 -223544668 + MIR SINE MIR 87 143 -65 226 320 130 0 chr1 19119704 19119804 -223544549 + MIR SINE MIR 2 114 -148 1933 202 47 55 chr1 19119830 19120339 -223544014 + MLT1D LTR MaLR 1 505 0 1314 168 86 57 chr1 19120543 19120823 -223543530 - AluJo SINE Alu -24 288 1 540 223 85 8 chr1 19120837 19120967 -223543386 + L2 LINE L2 3168 3307 -6 217 139 0 0 chr1 19121063 19121099 -223543254 + MIR SINE MIR 109 144 -64 752 235 92 41 chr1 19121656 19121852 -223542501 - MER63A DNA MER1_type -4 206 1 242 361 92 0 chr1 19122487 19122617 -223541736 - MIR SINE MIR -102 160 19 827 117 0 8 chr1 19123139 19123259 -223541094 + AluSg/x SINE Alu 186 304 -6 219 139 0 0 chr1 19123551 19123587 -223540766 + (CCCA)n Simple_repeat Simple_repeat 1 36 0 522 294 31 6 chr1 19123604 19123767 -223540586 + L2 LINE L2 2918 3084 -229 408 338 108 7 chr1 19123961 19124266 -223540087 - L2 LINE L2 -18 3254 2919 183 301 188 25 chr1 19124286 19124648 -223539705 - L2 LINE L2 -568 2746 2326 225 196 29 69 chr1 19124733 19124835 -223539518 + (CAGGG)n Simple_repeat Simple_repeat 3 100 0 266 263 32 63 chr1 19124886 19124981 -223539372 - MIR3 SINE MIR -24 184 93 322 270 87 16 chr1 19125202 19125328 -223539025 - MLT1I LTR MaLR -266 143 9 328 335 95 6 chr1 19125350 19125529 -223538824 - MIR SINE MIR -21 241 47 326 188 113 0 chr1 19126100 19126180 -223538173 + L2 LINE L2 3225 3313 0 615 286 12 7 chr1 19126963 19127155 -223537198 - MIR SINE MIR -65 143 3 353 325 204 5 chr1 19127307 19127498 -223536855 - MIR SINE MIR -11 251 23 2002 141 20 0 chr1 19127978 19128343 -223536010 + AluSx SINE Alu 1 371 0 265 189 156 0 chr1 19128426 19128516 -223535837 - MIR SINE MIR -49 159 42 523 298 259 18 chr1 19128863 19130179 -223534174 + L2 LINE L2 1329 2962 -352 246 359 28 69 chr1 19130310 19130455 -223533898 + L2 LINE L2 3134 3272 0 318 311 10 0 chr1 19130526 19130629 -223533724 - MIR SINE MIR -112 150 47 455 245 19 0 chr1 19130965 19131071 -223533282 - MIR SINE MIR -71 137 30 194 167 0 48 chr1 19131299 19131341 -223533012 + L2 LINE L2 3153 3192 -80 283 374 25 10 chr1 19131458 19131656 -223532697 + L1MC5 LINE L1 7727 7927 -34 250 329 24 0 chr1 19131731 19131816 -223532537 - MIR SINE MIR -12 250 164 313 332 80 30 chr1 19131941 19132140 -223532213 - MARNA DNA Mariner -133 453 245 639 290 54 84 chr1 19132482 19132924 -223531429 + L2 LINE L2 2824 3252 -20 327 243 43 0 chr1 19132951 19133021 -223531332 + MIR SINE MIR 102 174 -88 751 278 50 73 chr1 19133021 19133177 -223531176 - L2 LINE L2 -1 3312 3154 3018 116 118 27 chr1 19133177 19133660 -223530693 - MER1A DNA MER1_type 0 527 1 751 278 50 73 chr1 19133660 19133748 -223530605 - L2 LINE L2 -159 3154 3066 2240 92 3 0 chr1 19133748 19134042 -223530311 - AluSp SINE Alu -18 295 1 751 278 50 73 chr1 19134042 19134232 -223530121 - L2 LINE L2 -247 3066 2887 236 250 0 17 chr1 19135012 19135072 -223529281 + GA-rich Low_complexity Low_complexity 1 59 0 26 0 0 0 chr1 19135228 19135254 -223529099 + GC_rich Low_complexity Low_complexity 1 26 0 979 319 72 12 chr1 19135653 19135930 -223528423 - L2 LINE L2 0 3313 3001 1615 106 18 0 chr1 19135930 19136156 -223528197 - AluSp SINE Alu -19 294 65 979 319 72 12 chr1 19136156 19136295 -223528058 - L2 LINE L2 -312 3001 2872 428 309 22 0 chr1 19136771 19136907 -223527446 - MIR SINE MIR -34 228 90 1988 104 3 31 chr1 19136907 19137196 -223527157 + AluSq SINE Alu 1 281 -32 647 241 30 12 chr1 19137791 19137957 -223526396 - MER63A DNA MER1_type 0 210 42 195 114 0 0 chr1 19138110 19138145 -223526208 + (TA)n Simple_repeat Simple_repeat 2 36 0 244 259 0 25 chr1 19138152 19138233 -223526120 + MER116 DNA Mariner 1 79 -1 342 308 7 86 chr1 19138277 19138464 -223525889 + MIR3 SINE MIR 21 192 -32 220 240 124 33 chr1 19138880 19139001 -223525352 + MIR SINE MIR 23 154 -108 1608 177 3 20 chr1 19139001 19139295 -223525058 - AluJo SINE Alu -23 289 1 697 219 33 0 chr1 19139470 19139621 -223524732 + MIR SINE MIR 51 206 -56 1671 137 7 75 chr1 19139634 19139963 -223524390 + AluSx SINE Alu 1 308 0 946 226 24 32 chr1 19139971 19140219 -223524134 - MIR SINE MIR -12 250 5 2104 134 0 0 chr1 19140710 19141015 -223523338 + AluSx SINE Alu 1 305 -7 334 275 207 42 chr1 19141032 19141225 -223523128 + MIR SINE MIR 36 260 -2 239 298 106 10 chr1 19141994 19142098 -223522255 + MIR3 SINE MIR 9 122 -86 330 294 11 0 chr1 19142117 19142228 -223522125 + L2 LINE L2 3153 3308 -5 650 290 73 30 chr1 19142510 19142810 -223521543 - MER102b DNA MER1_type -3 338 26 223 400 27 0 chr1 19143239 19143389 -223520964 - MIR3 SINE MIR -9 199 46 237 293 198 0 chr1 19143812 19143918 -223520435 - MIR SINE MIR -79 183 57 699 293 43 12 chr1 19144272 19144525 -223519828 - L1ME3 LINE L1 0 6162 5902 1770 264 94 4 chr1 19144529 19145049 -223519304 + MLT1G1 LTR MaLR 1 567 -28 780 154 12 6 chr1 19145141 19145303 -223519050 + GA-rich Low_complexity Low_complexity 3 165 0 508 217 179 43 chr1 19145332 19145376 -223518977 - MLT1K LTR MaLR -66 522 485 2132 166 121 16 chr1 19145376 19145799 -223518554 - MLT1C LTR MaLR 0 467 1 508 217 179 43 chr1 19145799 19145938 -223518415 - MLT1K LTR MaLR -103 485 314 463 306 53 29 chr1 19146547 19146756 -223517597 - L2 LINE L2 -2 3311 3098 1917 144 17 3 chr1 19147074 19147372 -223516981 + AluJb SINE Alu 1 302 -10 389 234 0 54 chr1 19147409 19147520 -223516833 + L1ME3A LINE L1 6060 6164 -6 703 137 0 24 chr1 19147543 19147667 -223516686 + L1MA5A LINE L1 6177 6297 0 637 175 10 0 chr1 19147971 19148074 -223516279 + FLAM_A SINE Alu 4 107 -35 356 287 42 21 chr1 19148862 19149005 -223515348 + L2 LINE L2 3162 3307 -6 488 291 30 0 chr1 19149552 19149686 -223514667 - MIR SINE MIR -54 208 71 182 237 17 0 chr1 19149988 19150047 -223514306 + L2 LINE L2 2551 2610 -704 595 302 150 18 chr1 19150051 19150432 -223513921 + L2 LINE L2 2842 3272 0 531 291 51 7 chr1 19150850 19151050 -223513303 + MIR SINE MIR 31 241 -21 180 0 0 0 chr1 19151296 19151316 -223513037 + (A)n Simple_repeat Simple_repeat 1 20 0 1793 165 0 7 chr1 19151320 19151617 -223512736 + AluJo SINE Alu 1 295 -17 286 252 126 39 chr1 19152017 19152144 -223512209 - MIR3 SINE MIR -37 171 34 423 223 22 86 chr1 19152637 19152776 -223511577 + MLT1H LTR MaLR 81 210 -339 1822 153 3 20 chr1 19152785 19153086 -223511267 + AluJb SINE Alu 3 298 -14 294 241 0 0 chr1 19153133 19153220 -223511133 + (CACCAT)n Simple_repeat Simple_repeat 4 90 0 209 404 20 10 chr1 19153688 19153787 -223510566 + MIR SINE MIR 22 121 -141 1456 147 34 0 chr1 19154209 19154447 -223509906 + AluSx SINE Alu 58 303 -9 951 224 160 71 chr1 19154535 19155066 -223509287 - L2 LINE L2 -10 3303 2820 1779 159 24 14 chr1 19155066 19155355 -223508998 + AluJo SINE Alu 6 297 -15 2401 69 14 3 chr1 19155357 19155647 -223508706 + AluY SINE Alu 3 295 -16 951 224 160 71 chr1 19155647 19155819 -223508534 - L2 LINE L2 -493 2820 2665 2730 86 5 0 chr1 19155819 19156192 -223508161 - THE1C LTR MaLR 0 375 1 951 224 160 71 chr1 19156192 19156227 -223508126 - L2 LINE L2 -648 2665 2490 2167 147 0 0 chr1 19156277 19156612 -223507741 - AluJb SINE Alu 0 335 1 337 350 102 0 chr1 19157189 19157346 -223507007 - MIR SINE MIR -74 188 16 612 290 70 0 chr1 19157615 19157801 -223506552 - MIR SINE MIR -15 247 49 254 172 16 139 chr1 19158240 19158305 -223506048 + MER113 DNA MER1_type? 12 58 -463 2068 123 3 3 chr1 19158305 19158632 -223505721 - AluSx SINE Alu 0 327 1 254 172 16 139 chr1 19158632 19158687 -223505666 + MER113 DNA MER1_type? 58 118 -403 554 304 11 11 chr1 19159060 19159244 -223505109 - L2 LINE L2 -176 3096 2913 303 264 153 35 chr1 19159432 19159576 -223504777 - MIR SINE MIR -47 161 1 492 289 16 8 chr1 19159597 19159725 -223504628 + MIR3 SINE MIR 27 155 -53 513 248 45 46 chr1 19159752 19159924 -223504429 - MIR SINE MIR -62 146 18 969 182 12 24 chr1 19160991 19161196 -223503157 - MIR SINE MIR -14 248 46 336 348 43 14 chr1 19161168 19161309 -223503044 - MIR3 SINE MIR -17 191 47 * 2829 214 89 48 chr1 19161529 19161728 -223502625 + L1ME1 LINE L1 5318 5507 -659 2468 91 7 0 chr1 19161728 19162037 -223502316 + AluSx SINE Alu 1 311 -1 2829 214 89 48 chr1 19162037 19162585 -223501768 + L1ME1 LINE L1 5507 6103 -63 2286 131 0 3 chr1 19162585 19162898 -223501455 + AluSx SINE Alu 1 312 0 2829 214 89 48 chr1 19162898 19162960 -223501393 + L1ME1 LINE L1 6103 6161 -5 195 259 86 0 chr1 19163158 19163216 -223501137 - MIR3 SINE MIR -30 178 116 410 296 16 8 chr1 19163419 19163544 -223500809 + MIR SINE MIR 29 154 -108 465 327 16 28 chr1 19163560 19163811 -223500542 - MLT1L LTR MaLR -8 607 360 320 338 108 10 chr1 19164313 19164517 -223499836 - L1MC4a LINE L1 -1690 6118 5895 1172 301 63 12 chr1 19164522 19165030 -223499323 - L1MC4a LINE L1 -1979 5829 5296 2221 88 7 33 chr1 19165142 19165489 -223498864 - AluSx SINE Alu 0 312 1 1161 182 53 0 chr1 19165513 19165632 -223498721 + AluJo SINE Alu 1 137 -175 192 77 0 0 chr1 19165632 19165658 -223498695 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1161 182 53 0 chr1 19165658 19165747 -223498606 + AluJo SINE Alu 137 220 -92 430 336 91 5 chr1 19165796 19166171 -223498182 - L1MC4a LINE L1 -999 5147 4741 663 261 53 13 chr1 19166448 19166646 -223497707 - L1ME3A LINE L1 -11 6159 5949 393 45 0 286 chr1 19166646 19166758 -223497595 + MADE1 DNA Mariner 1 80 0 663 261 53 13 chr1 19166758 19166785 -223497568 - L1ME3A LINE L1 -221 5949 5925 * 6230 33 1 10 chr1 19166784 19167565 -223496788 - L1PA5 LINE L1 0 6154 5381 1385 93 0 271 chr1 19167642 19167900 -223496453 - AluJb SINE Alu -12 300 186 2243 87 28 3 chr1 19167900 19168189 -223496164 - AluY SINE Alu -15 296 1 1385 93 0 271 chr1 19168189 19168329 -223496024 - AluJb SINE Alu -126 186 10 670 264 24 0 chr1 19168341 19168508 -223495845 - L1ME3A LINE L1 -265 5905 5735 1800 178 0 7 chr1 19168561 19168854 -223495499 + AluJo SINE Alu 1 291 -21 530 286 19 0 chr1 19168885 19169039 -223495314 - L1ME3A LINE L1 -462 5700 5544 436 322 50 52 chr1 19169040 19169472 -223494881 + MLT1J1 LTR MaLR 16 450 0 259 295 93 20 chr1 19169656 19169958 -223494395 - L1M4 LINE L1 -3676 2470 2147 266 56 0 0 chr1 19170304 19170340 -223494013 + tRNA-Gln-CAG tRNA tRNA 3 38 -37 225 341 9 24 chr1 19170349 19170560 -223493793 - HAL1b LINE L1 -457 891 684 395 311 15 29 chr1 19170571 19170777 -223493576 - HAL1b LINE L1 -716 632 430 2194 83 0 4 chr1 19171443 19171719 -223492634 + AluY SINE Alu 36 310 -1 510 118 35 0 chr1 19171765 19171850 -223492503 - MER2 DNA MER2_type -139 206 119 696 167 0 0 chr1 19171852 19171960 -223492393 + AluSx SINE Alu 2 109 -204 1255 150 0 34 chr1 19172173 19172380 -223491973 + AluSx SINE Alu 108 307 -5 489 179 0 0 chr1 19172380 19172464 -223491889 - MER2 DNA MER2_type -213 132 49 355 347 114 0 chr1 19172495 19172688 -223491665 - L2 LINE L2 -178 3135 2921 2254 122 3 3 chr1 19172743 19173055 -223491298 + AluSx SINE Alu 1 312 0 1222 122 6 22 chr1 19173079 19173260 -223491093 + AluJb SINE Alu 118 295 -17 2065 138 6 31 chr1 19173260 19173610 -223490743 + AluSx SINE Alu 1 312 0 554 196 65 7 chr1 19173653 19173791 -223490562 - L2 LINE L2 -533 2781 2636 187 239 55 92 chr1 19174318 19174427 -223489926 - MIR SINE MIR -49 213 109 1724 166 40 3 chr1 19175139 19175435 -223488918 - AluJo SINE Alu -5 307 1 350 292 62 15 chr1 19175463 19175593 -223488760 + L2 LINE L2 3134 3269 -3 327 154 11 33 chr1 19176012 19176103 -223488250 + GA-rich Low_complexity Low_complexity 3 91 0 198 0 0 0 chr1 19176104 19176126 -223488227 + (A)n Simple_repeat Simple_repeat 1 22 0 190 282 0 28 chr1 19176399 19176470 -223487883 - MIR SINE MIR -82 126 58 21 0 0 0 chr1 19176666 19176687 -223487666 + AT_rich Low_complexity Low_complexity 1 21 0 443 309 40 7 chr1 19176761 19176913 -223487440 + MIR3 SINE MIR 29 185 -23 2398 86 3 0 chr1 19177081 19177383 -223486970 + AluSq SINE Alu 1 303 -10 322 333 25 0 chr1 19177411 19177531 -223486822 - MIR SINE MIR -74 188 66 380 116 128 0 chr1 19177829 19177915 -223486438 - MER53 DNA DNA -86 103 7 364 214 0 0 chr1 19178209 19178279 -223486074 + MIR SINE MIR 78 147 -61 400 306 22 0 chr1 19178689 19178823 -223485530 + L2 LINE L2 3136 3272 0 511 260 117 0 chr1 19178825 19178979 -223485374 - MIR SINE MIR -87 175 4 1105 113 11 8 chr1 19178993 19179345 -223485008 + (TGAA)n Simple_repeat Simple_repeat 3 354 0 342 299 88 7 chr1 19179623 19179770 -223484583 + MIR SINE MIR 40 198 -64 183 320 50 10 chr1 19180175 19180275 -223484078 + MIR SINE MIR 30 133 -75 469 253 70 38 chr1 19180526 19180684 -223483669 - MIR SINE MIR -68 194 32 320 227 53 0 chr1 19180890 19180965 -223483388 - MIR SINE MIR -115 147 69 1796 156 58 14 chr1 19180997 19181292 -223483061 - AluJb SINE Alu -4 308 1 287 280 27 0 chr1 19181746 19181821 -223482532 + L2 LINE L2 3234 3310 -3 266 301 12 12 chr1 19183970 19184053 -223480300 + MIR3 SINE MIR 107 189 -19 373 245 9 19 chr1 19184066 19184172 -223480181 - MIR SINE MIR -49 213 109 320 222 101 0 chr1 19184645 19184744 -223479609 - MER20 DNA MER1_type -82 137 29 404 306 82 0 chr1 19184798 19184932 -223479421 + MIR SINE MIR 12 156 -106 954 209 9 41 chr1 19185275 19185495 -223478858 + MER20 DNA MER1_type 6 218 -1 254 287 57 41 chr1 19185953 19186075 -223478278 - MIR SINE MIR -16 246 123 1409 219 52 21 chr1 19186278 19186404 -223477949 + L1MB5 LINE L1 5780 5901 -273 2273 118 0 0 chr1 19186404 19186700 -223477653 + AluSx SINE Alu 1 296 -16 1409 219 52 21 chr1 19186700 19186956 -223477397 + L1MB5 LINE L1 5901 6174 0 227 185 0 37 chr1 19186960 19186988 -223477365 + A-rich Low_complexity Low_complexity 1 28 -24 1593 134 0 119 chr1 19186988 19187120 -223477233 + AluJo SINE Alu 1 147 -155 1834 150 55 4 chr1 19187120 19187393 -223476960 + AluSx SINE Alu 1 287 -25 1593 134 0 119 chr1 19187393 19187603 -223476750 + AluJo SINE Alu 147 302 0 227 185 0 37 chr1 19187603 19187628 -223476725 + A-rich Low_complexity Low_complexity 28 52 0 1001 131 0 6 chr1 19187737 19187905 -223476448 + (GGAA)n Simple_repeat Simple_repeat 2 168 0 305 303 45 65 chr1 19188384 19188539 -223475814 + L1ME4a LINE L1 5759 5910 -211 1982 128 57 0 chr1 19189115 19189397 -223474956 + AluSx SINE Alu 1 298 -14 2174 115 0 11 chr1 19189399 19189706 -223474647 + AluSq SINE Alu 1 304 0 420 248 26 0 chr1 19189853 19189970 -223474383 - MIR SINE MIR -123 139 20 1920 114 85 0 chr1 19190106 19190409 -223473944 + AluSg SINE Alu 3 310 0 622 274 34 6 chr1 19190418 19190597 -223473756 - MIR SINE MIR -32 230 47 1873 156 30 7 chr1 19191452 19191747 -223472606 + AluJb SINE Alu 1 302 -10 451 274 48 20 chr1 19191990 19192136 -223472217 - MIR3 SINE MIR -29 179 30 942 133 5 109 chr1 19192519 19192581 -223471772 - MER5A DNA MER1_type -1 188 121 2049 151 0 0 chr1 19192581 19192880 -223471473 + AluJb SINE Alu 1 299 -13 942 133 5 109 chr1 19192880 19193027 -223471326 - MER5A DNA MER1_type -68 121 1 218 290 14 0 chr1 19193185 19193254 -223471099 + L2 LINE L2 3232 3301 -12 257 338 35 0 chr1 19193506 19193648 -223470705 - L1ME4a LINE L1 -31 6090 5944 2443 62 13 16 chr1 19193785 19194092 -223470261 + AluSp SINE Alu 1 306 -7 2020 148 0 7 chr1 19194101 19194411 -223469942 + AluJb SINE Alu 1 308 -4 2373 77 0 10 chr1 19194420 19194719 -223469634 + AluY SINE Alu 1 296 -15 816 269 8 26 chr1 19194729 19194963 -223469390 + MIR SINE MIR 29 258 -4 699 286 115 34 chr1 19195019 19195516 -223468837 - L1ME4a LINE L1 -318 5803 5267 471 325 102 15 chr1 19196069 19196296 -223468057 - MIR SINE MIR -15 247 1 239 298 91 16 chr1 19196296 19196401 -223467952 + MIR SINE MIR 52 165 -97 2122 132 10 0 chr1 19196791 19197087 -223467266 - AluSx SINE Alu -13 299 1 2123 153 0 0 chr1 19197291 19197599 -223466754 + AluSx SINE Alu 1 308 -4 1746 167 17 3 chr1 19197860 19198147 -223466206 + AluJb SINE Alu 1 291 -21 1702 196 81 37 chr1 19198160 19198644 -223465709 - MLT1D LTR MaLR 0 505 1 28 48 0 0 chr1 19198771 19198813 -223465540 + AT_rich Low_complexity Low_complexity 1 42 0 535 328 23 0 chr1 19198816 19198987 -223465366 + MIR SINE MIR 67 241 -21 1855 133 0 81 chr1 19199002 19199232 -223465121 - AluSq SINE Alu -17 296 98 2377 100 3 0 chr1 19199232 19199533 -223464820 - AluSx SINE Alu -10 302 1 1855 133 0 81 chr1 19199533 19199624 -223464729 - AluSq SINE Alu -215 98 1 219 36 0 0 chr1 19199716 19199744 -223464609 + (CA)n Simple_repeat Simple_repeat 1 28 0 263 289 33 11 chr1 19200482 19200572 -223463781 - L2 LINE L2 0 3272 3181 1123 158 0 0 chr1 19200648 19200825 -223463528 + AluSp SINE Alu 137 313 0 344 306 122 0 chr1 19200844 19201024 -223463329 + MIR SINE MIR 57 258 -4 267 230 200 20 chr1 19201453 19201553 -223462800 - L2 LINE L2 0 3313 3196 298 185 22 51 chr1 19202675 19202853 -223461500 + GA-rich Low_complexity Low_complexity 2 174 0 2186 123 0 3 chr1 19202883 19203184 -223461169 + AluSx SINE Alu 12 311 -1 356 274 11 11 chr1 19203192 19203371 -223460982 + GA-rich Low_complexity Low_complexity 2 180 0 209 183 17 0 chr1 19204706 19204766 -223459587 + GA-rich Low_complexity Low_complexity 1 61 0 252 266 32 11 chr1 19205699 19205793 -223458560 + (TA)n Simple_repeat Simple_repeat 2 97 0 279 0 0 0 chr1 19207356 19207387 -223456966 + (TCC)n Simple_repeat Simple_repeat 2 32 0 497 124 10 0 chr1 19212032 19212129 -223452224 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 276 30 0 0 chr1 19212357 19212390 -223451963 + (TG)n Simple_repeat Simple_repeat 2 34 0 214 293 0 0 chr1 19212830 19212888 -223451465 + GA-rich Low_complexity Low_complexity 2 59 0 200 196 65 0 chr1 19213300 19213346 -223451007 + G-rich Low_complexity Low_complexity 2 50 0 213 225 0 0 chr1 19214788 19214828 -223449525 + GA-rich Low_complexity Low_complexity 2 41 0 230 190 35 52 chr1 19217025 19217083 -223447270 + G-rich Low_complexity Low_complexity 3 59 0 22 35 0 0 chr1 19217378 19217407 -223446946 + GC_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr1 19218681 19218722 -223445631 + AT_rich Low_complexity Low_complexity 1 41 0 266 260 10 20 chr1 19219465 19219565 -223444788 + G-rich Low_complexity Low_complexity 1 99 0 283 310 35 53 chr1 19220854 19220967 -223443386 + MIR3 SINE MIR 52 162 -46 475 252 150 7 chr1 19221441 19221588 -223442765 - L2 LINE L2 -1 3312 3145 229 237 17 0 chr1 19221654 19221713 -223442640 + (TG)n Simple_repeat Simple_repeat 1 60 0 186 278 0 19 chr1 19222983 19223037 -223441316 + MIR SINE MIR 113 165 -97 183 42 0 0 chr1 19223425 19223449 -223440904 + (CGCGG)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr1 19223454 19223475 -223440878 + GC_rich Low_complexity Low_complexity 1 21 0 232 252 9 56 chr1 19223519 19223626 -223440727 + G-rich Low_complexity Low_complexity 1 102 0 214 372 36 15 chr1 19223859 19223996 -223440357 + MIR3 SINE MIR 67 206 -2 1974 160 0 3 chr1 19224882 19225195 -223439158 - AluJb SINE Alu 0 312 1 289 241 172 0 chr1 19225633 19225720 -223438633 - MIR3 SINE MIR -20 188 87 210 130 109 0 chr1 19225910 19225956 -223438397 - MIR SINE MIR -123 139 89 288 359 42 35 chr1 19226378 19226520 -223437833 + MIR3 SINE MIR 59 201 -7 183 272 97 39 chr1 19226856 19226959 -223437394 + MIR SINE MIR 19 127 -81 265 363 35 0 chr1 19227214 19227327 -223437026 - MIR3 SINE MIR -49 159 43 314 316 59 26 chr1 19227572 19227724 -223436629 + MIR3 SINE MIR 3 159 -49 228 213 0 0 chr1 19228348 19228395 -223435958 + C-rich Low_complexity Low_complexity 1 47 0 584 297 96 23 chr1 19228843 19229146 -223435207 - L2 LINE L2 -1 3312 2988 297 289 67 44 chr1 19229183 19229318 -223435035 - MIR SINE MIR -18 244 107 457 337 86 0 chr1 19229388 19229563 -223434790 - MIR SINE MIR -25 237 48 195 139 0 0 chr1 19229731 19229767 -223434586 + (T)n Simple_repeat Simple_repeat 1 36 0 458 282 40 0 chr1 19230253 19230377 -223433976 - MIR SINE MIR -114 148 20 559 193 40 47 chr1 19231303 19231453 -223432900 - MIR SINE MIR -68 194 46 378 57 0 0 chr1 19232323 19232376 -223431977 + (TG)n Simple_repeat Simple_repeat 1 53 0 451 273 65 26 chr1 19232571 19232725 -223431628 + MIR SINE MIR 103 262 0 2059 102 7 20 chr1 19232766 19233070 -223431283 + AluSx SINE Alu 3 302 -10 1916 137 13 3 chr1 19233265 19233565 -223430788 + AluJb SINE Alu 1 303 -9 277 222 0 16 chr1 19234751 19234814 -223429539 + C-rich Low_complexity Low_complexity 3 64 0 311 306 106 25 chr1 19234944 19235104 -223429249 - MIR SINE MIR -1 261 89 422 241 0 37 chr1 19235491 19235678 -223428675 + (TG)n Simple_repeat Simple_repeat 1 180 0 212 287 35 91 chr1 19235705 19235848 -223428505 + L2 LINE L2 3163 3297 -16 485 221 10 0 chr1 19236260 19236364 -223427989 - MER81 DNA DNA -9 105 1 301 320 10 10 chr1 19236722 19236822 -223427531 + MIR SINE MIR 18 117 -145 278 297 54 18 chr1 19237430 19237541 -223426812 + MIR SINE MIR 98 212 -50 393 285 204 16 chr1 19238040 19238226 -223426127 + MIR SINE MIR 23 243 -19 224 337 20 50 chr1 19238765 19238866 -223425487 + MIR SINE MIR 68 165 -97 294 29 0 0 chr1 19238969 19239004 -223425349 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 1999 144 3 10 chr1 19239113 19239425 -223424928 - AluSx SINE Alu -2 310 1 469 313 44 62 chr1 19239431 19239703 -223424650 - L1ME4a LINE L1 -6 6115 5849 351 277 2 126 chr1 19239815 19239924 -223424429 - MIR SINE MIR -62 146 73 1960 138 3 0 chr1 19239924 19240234 -223424119 - AluSx SINE Alu 0 311 1 351 277 2 126 chr1 19240234 19240274 -223424079 - MIR SINE MIR -135 73 30 592 204 99 14 chr1 19240675 19240817 -223423536 - MIR3 SINE MIR -4 204 51 348 250 37 98 chr1 19241076 19241240 -223423113 - MIR SINE MIR -51 211 58 * 383 183 10 87 chr1 19241215 19241319 -223423034 - MIR3 SINE MIR -9 199 104 595 276 162 18 chr1 19241500 19241728 -223422625 + MIR SINE MIR 2 262 0 2301 101 3 0 chr1 19241917 19242225 -223422128 - AluSc SINE Alu 0 309 1 1980 137 3 7 chr1 19242225 19242524 -223421829 - AluSx SINE Alu -14 298 1 715 187 41 0 chr1 19242579 19242702 -223421651 + FLAM_C SINE Alu 1 128 -5 181 357 18 27 chr1 19243569 19243681 -223420672 - L3b LINE CR1 -155 1428 1318 389 211 128 28 chr1 19243702 19243811 -223420542 + MIR SINE MIR 51 170 -92 760 48 19 0 chr1 19243900 19244005 -223420348 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 789 188 55 12 chr1 19244593 19244758 -223419595 + MER5B DNA MER1_type 1 172 -6 318 362 64 7 chr1 19244816 19244957 -223419396 + MIR SINE MIR 109 257 -5 1740 173 0 10 chr1 19244971 19245260 -223419093 + AluJb SINE Alu 1 286 -26 578 254 14 0 chr1 19246003 19246141 -223418212 + MIR3 SINE MIR 49 188 -20 492 259 81 51 chr1 19246233 19246396 -223417957 + MIR SINE MIR 39 210 -52 2062 77 4 0 chr1 19246396 19246657 -223417696 + AluSg SINE Alu 41 302 -8 492 259 81 51 chr1 19246657 19246690 -223417663 + MIR SINE MIR 210 241 -21 200 374 157 0 chr1 19246720 19246803 -223417550 + MIR SINE MIR 107 202 -60 293 283 107 78 chr1 19248159 19248254 -223416099 + MIR SINE MIR 46 137 -125 1564 166 57 33 chr1 19248254 19248555 -223415798 + AluJo SINE Alu 1 308 -4 293 283 107 78 chr1 19248555 19248664 -223415689 + MIR SINE MIR 137 256 -6 2052 114 10 16 chr1 19249149 19249456 -223414897 - AluSx SINE Alu -7 305 1 488 330 93 8 chr1 19249628 19249864 -223414489 + MIR SINE MIR 7 262 0 547 252 0 0 chr1 19250674 19250785 -223413568 - L2 LINE L2 -1 3312 3202 536 189 195 38 chr1 19251373 19251532 -223412821 + MER5A DNA MER1_type 1 184 -5 384 248 73 51 chr1 19251902 19252039 -223412314 - MIR3 SINE MIR 0 208 69 183 369 15 0 chr1 19252056 19252121 -223412232 - L2 LINE L2 -31 3282 3217 285 151 0 0 chr1 19253043 19253096 -223411257 + G-rich Low_complexity Low_complexity 1 53 0 192 287 46 58 chr1 19253329 19253416 -223410937 - L2 LINE L2 -11 3261 3176 2223 116 0 0 chr1 19254354 19254664 -223409689 + AluSg SINE Alu 1 310 0 2057 105 45 0 chr1 19254682 19254968 -223409385 + AluSp SINE Alu 1 299 -14 454 230 206 6 chr1 19255453 19255618 -223408735 + MIR SINE MIR 15 212 -50 180 125 0 0 chr1 19256336 19256368 -223407985 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 242 209 0 81 chr1 19256376 19256462 -223407891 - L2 LINE L2 -1 3271 3193 703 181 102 14 chr1 19256509 19256697 -223407656 - MIR SINE MIR 0 262 59 200 260 11 97 chr1 19256762 19256889 -223407464 - MIR SINE MIR -71 137 59 280 315 75 27 chr1 19257053 19257199 -223407154 - MIR SINE MIR -55 155 1 2288 72 13 31 chr1 19257428 19257746 -223406607 + AluSp SINE Alu 1 312 -1 1849 118 52 0 chr1 19258244 19258590 -223405763 - AluSq SINE Alu 0 360 1 183 336 48 10 chr1 19259118 19259222 -223405131 + MIR SINE MIR 28 135 -127 244 184 61 0 chr1 19259975 19260024 -223404329 - L2 LINE L2 0 3313 3262 1902 147 7 0 chr1 19260110 19260410 -223403943 + AluSx SINE Alu 1 302 -10 387 356 75 16 chr1 19261906 19262248 -223402105 - L2 LINE L2 -1 3312 2866 363 44 0 0 chr1 19262451 19262496 -223401857 + (CACCAT)n Simple_repeat Simple_repeat 3 47 0 2073 122 0 0 chr1 19263427 19263743 -223400610 - AluSx SINE Alu 0 316 1 461 257 31 32 chr1 19263752 19263911 -223400442 - MIR SINE MIR -62 146 44 338 269 56 9 chr1 19263995 19264103 -223400250 + MIR SINE MIR 57 169 -93 762 253 72 16 chr1 19264613 19264917 -223399436 + MER113 DNA MER1_type? 11 331 -190 966 233 30 0 chr1 19264928 19265130 -223399223 - MER3 DNA MER1_type -1 208 1 2039 126 0 40 chr1 19265171 19265496 -223398857 + AluSx SINE Alu 1 312 0 263 295 42 21 chr1 19265517 19265612 -223398741 + L2 LINE L2 3133 3229 -43 198 268 0 0 chr1 19266330 19266386 -223397967 + L2 LINE L2 2928 2983 -289 232 303 128 28 chr1 19266644 19266753 -223397600 + L2 LINE L2 3153 3272 0 288 299 0 13 chr1 19266793 19266870 -223397483 + GA-rich Low_complexity Low_complexity 2 77 0 542 276 16 0 chr1 19267387 19267514 -223396839 - MIR3 SINE MIR -40 168 40 1689 176 7 3 chr1 19267537 19267821 -223396532 - AluJo SINE Alu -17 295 11 313 247 0 41 chr1 19267852 19267949 -223396404 - L1ME1 LINE L1 -6 6160 6068 227 337 0 0 chr1 19268077 19268160 -223396193 - L1ME1 LINE L1 -2037 5771 5689 254 278 0 9 chr1 19268713 19268812 -223395541 + GA-rich Low_complexity Low_complexity 2 101 -14 2225 109 0 0 chr1 19268812 19269116 -223395237 + AluSx SINE Alu 1 304 -8 254 278 0 9 chr1 19269116 19269131 -223395222 + GA-rich Low_complexity Low_complexity 101 115 0 253 404 40 15 chr1 19269798 19269996 -223394357 - MIR SINE MIR 0 262 60 2103 90 11 0 chr1 19270737 19271078 -223393275 + AluSp SINE Alu 6 349 0 387 288 144 13 chr1 19271202 19271355 -223392998 + MIR3 SINE MIR 20 192 -16 272 312 0 13 chr1 19271372 19271449 -223392904 + L3 LINE CR1 1413 1488 -89 232 299 217 37 chr1 19271611 19271828 -223392525 + MIR SINE MIR 7 262 0 421 277 189 0 chr1 19271887 19272035 -223392318 - L2 LINE L2 -3 3310 3135 2319 97 7 3 chr1 19272609 19272919 -223391434 - AluSq SINE Alu -2 311 1 579 272 47 87 chr1 19272919 19273087 -223391266 - MIR SINE MIR -14 248 92 3587 94 17 13 chr1 19273087 19273608 -223390745 + L1MA3 LINE L1 5782 6304 -1 579 272 47 87 chr1 19273608 19273693 -223390660 - MIR SINE MIR -170 92 5 192 361 31 0 chr1 19273855 19273952 -223390401 + MIR3 SINE MIR 91 190 -18 607 240 157 5 chr1 19273978 19274182 -223390171 - MIR SINE MIR -25 237 3 290 297 82 69 chr1 19274274 19274506 -223389847 + L2 LINE L2 3024 3258 -14 234 176 0 0 chr1 19274530 19274581 -223389772 + GA-rich Low_complexity Low_complexity 2 52 0 494 278 96 33 chr1 19274777 19274825 -223389528 + MER113 DNA MER1_type? 161 205 -316 293 0 0 26 chr1 19274825 19274863 -223389490 + (CA)n Simple_repeat Simple_repeat 2 38 0 494 278 96 33 chr1 19274863 19275084 -223389269 + MER113 DNA MER1_type? 205 447 -74 236 77 26 0 chr1 19275642 19275681 -223388672 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 341 208 160 0 chr1 19275909 19276015 -223388338 - L2 LINE L2 -237 3035 2913 571 226 24 71 chr1 19276095 19276117 -223388236 + MIR SINE MIR 28 49 -213 2406 51 3 3 chr1 19276117 19276413 -223387940 - AluY SINE Alu -15 296 1 571 226 24 71 chr1 19276413 19276558 -223387795 + MIR SINE MIR 49 187 -75 360 0 0 0 chr1 19276630 19276670 -223387683 + (TG)n Simple_repeat Simple_repeat 2 41 0 544 264 104 21 chr1 19276857 19277062 -223387291 + MIR SINE MIR 7 223 -39 194 331 8 79 chr1 19277566 19277693 -223386660 + MER5A DNA MER1_type 41 158 -31 * 332 272 37 7 chr1 19277593 19277727 -223386626 - MER5A DNA MER1_type -41 137 9 495 230 0 0 chr1 19277861 19278026 -223386327 + (TG)n Simple_repeat Simple_repeat 2 166 0 2150 89 3 35 chr1 19278603 19278918 -223385435 + AluSx SINE Alu 1 305 -7 436 314 64 19 chr1 19279093 19279249 -223385104 + MIR SINE MIR 6 168 -94 258 175 0 0 chr1 19279355 19279395 -223384958 - MIR SINE MIR -6 256 217 370 317 75 30 chr1 19280460 19280659 -223383694 + MIR SINE MIR 49 256 -6 806 176 59 59 chr1 19280741 19280891 -223383462 + MER58A DNA MER1_type 5 157 -2263 2173 132 3 0 chr1 19280891 19281201 -223383152 + AluSx SINE Alu 1 311 -1 806 176 59 59 chr1 19281201 19281254 -223383099 + MER58A DNA MER1_type 156 208 -16 662 299 31 21 chr1 19281368 19281562 -223382791 + MIR SINE MIR 59 254 -8 2029 114 0 63 chr1 19283003 19283335 -223381018 - AluSx SINE Alu -1 311 1 493 230 86 20 chr1 19283622 19283774 -223380579 - L2 LINE L2 -2 3311 3150 188 372 13 0 chr1 19283812 19283890 -223380463 - MIR SINE MIR 0 262 184 181 260 140 0 chr1 19283887 19283937 -223380416 - MIR SINE MIR -186 76 20 * 2291 107 0 16 chr1 19283960 19284277 -223380076 - AluSx SINE Alu 0 312 1 1801 149 4 0 chr1 19284830 19285111 -223379242 + AluJb SINE Alu 5 286 -26 229 265 20 0 chr1 19285323 19285372 -223378981 - L2 LINE L2 -86 3186 3137 189 248 19 124 chr1 19285696 19285801 -223378552 - MIR SINE MIR -74 134 41 191 111 0 0 chr1 19286182 19286212 -223378141 - MIR SINE MIR -110 152 124 249 292 0 0 chr1 19286237 19286302 -223378051 - L2 LINE L2 0 3272 3208 212 250 188 0 chr1 19286298 19286362 -223377991 - MIR SINE MIR -182 80 5 * 462 310 185 0 chr1 19286636 19286820 -223377533 - MIR SINE MIR -12 250 33 674 205 95 35 chr1 19287708 19287908 -223376445 + MIR SINE MIR 40 251 -11 2072 126 0 0 chr1 19289352 19289645 -223374708 + AluSx SINE Alu 1 293 -19 612 308 27 7 chr1 19290437 19290481 -223373872 + MIR SINE MIR 16 58 -204 2088 103 14 7 chr1 19290481 19290804 -223373549 + AluSx SINE Alu 1 312 0 612 308 27 7 chr1 19290804 19290993 -223373360 + MIR SINE MIR 58 252 -10 450 347 35 6 chr1 19291080 19291253 -223373100 + MIR3 SINE MIR 27 204 -4 299 253 62 84 chr1 19291666 19291844 -223372509 + L2 LINE L2 2914 3087 -185 556 303 6 22 chr1 19291931 19292109 -223372244 - MIR SINE MIR 0 262 88 648 322 75 5 chr1 19292125 19292339 -223372014 + MIR SINE MIR 2 230 -32 230 321 110 0 chr1 19292353 19292462 -223371891 - MIR SINE MIR -68 140 20 207 263 0 92 chr1 19293288 19293440 -223370913 + C-rich Low_complexity Low_complexity 4 141 0 204 40 0 0 chr1 19293589 19293614 -223370739 + (CCG)n Simple_repeat Simple_repeat 3 27 0 381 284 149 55 chr1 19293984 19294273 -223370080 + L2 LINE L2 2937 3252 -20 185 309 182 9 chr1 19294300 19294410 -223369943 - L2 LINE L2 -25 3288 3160 286 333 90 40 chr1 19294731 19294908 -223369445 + L3 LINE CR1 1347 1532 -45 261 311 66 25 chr1 19294927 19295049 -223369304 - MER5A DNA MER1_type -41 148 22 2229 81 7 3 chr1 19295196 19295492 -223368861 - AluSg SINE Alu -13 297 1 193 303 45 0 chr1 19295565 19295631 -223368722 - MIR3 SINE MIR -17 191 123 198 233 33 50 chr1 19296686 19296746 -223367607 + MER5A DNA MER1_type 130 188 -1 198 71 0 0 chr1 19297269 19297297 -223367056 + (GA)n Simple_repeat Simple_repeat 1 28 0 796 238 5 26 chr1 19298517 19298710 -223365643 + MIR SINE MIR 74 262 0 219 355 50 16 chr1 19299519 19299640 -223364713 - L2 LINE L2 -45 3227 3103 334 336 16 0 chr1 19301198 19301320 -223363033 + MIR SINE MIR 20 143 -119 244 270 0 0 chr1 19301366 19301429 -223362924 - HsTC2 DNA Tc2 -609 1289 1227 201 74 0 0 chr1 19301623 19301650 -223362703 - MIR SINE MIR -119 143 117 205 298 0 0 chr1 19301952 19301999 -223362354 + C-rich Low_complexity Low_complexity 1 47 0 351 167 0 0 chr1 19302532 19302598 -223361755 + (TG)n Simple_repeat Simple_repeat 2 67 0 327 25 0 0 chr1 19302692 19302732 -223361621 + (TG)n Simple_repeat Simple_repeat 2 41 0 258 196 20 0 chr1 19302975 19303026 -223361327 - L2 LINE L2 0 3313 3262 182 393 22 15 chr1 19303214 19303349 -223361004 - L3b LINE CR1 -150 1433 1298 420 271 28 11 chr1 19303642 19303819 -223360534 + (CA)n Simple_repeat Simple_repeat 1 180 0 357 24 0 0 chr1 19303921 19303963 -223360390 + (CA)n Simple_repeat Simple_repeat 1 42 0 383 296 115 35 chr1 19304045 19304222 -223360131 + MIR SINE MIR 25 211 -51 207 264 0 23 chr1 19304867 19304954 -223359399 + (TG)n Simple_repeat Simple_repeat 2 86 0 324 176 11 77 chr1 19305070 19305131 -223359222 - MER5B DNA MER1_type -1 177 122 2201 88 3 16 chr1 19305131 19305436 -223358917 + AluSp SINE Alu 1 301 -12 324 176 11 77 chr1 19305436 19305465 -223358888 - MER5B DNA MER1_type -56 122 93 216 239 0 0 chr1 19305448 19305494 -223358859 + MER5B DNA MER1_type 133 178 0 * 231 266 22 11 chr1 19305920 19306028 -223358325 + MIR SINE MIR 96 205 -57 655 220 65 27 chr1 19306644 19306830 -223357523 - MIR SINE MIR -4 258 66 248 238 12 48 chr1 19307434 19307518 -223356835 + G-rich Low_complexity Low_complexity 2 82 0 560 270 75 23 chr1 19307941 19308115 -223356238 + MIR SINE MIR 20 202 -60 869 237 197 15 chr1 19308586 19308911 -223355442 + L2 LINE L2 2926 3309 -4 347 303 25 17 chr1 19308914 19309033 -223355320 - L2 LINE L2 -3 3269 3150 200 203 51 17 chr1 19309029 19309088 -223355265 + L2 LINE L2 3249 3309 -4 * 245 240 32 96 chr1 19310411 19310536 -223353817 + MIR SINE MIR 80 196 -66 189 250 78 0 chr1 19311144 19311208 -223353145 + L2 LINE L2 3021 3089 -183 252 100 0 0 chr1 19311833 19311873 -223352480 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 239 333 140 0 chr1 19312540 19312633 -223351720 - MIR SINE MIR -65 143 38 1413 185 32 42 chr1 19312657 19312735 -223351618 - Charlie5 DNA MER1_type -8 2616 2539 2329 117 0 0 chr1 19312735 19313035 -223351318 + AluSx SINE Alu 1 300 -12 1413 185 32 42 chr1 19313035 19313334 -223351019 - Charlie5 DNA MER1_type -85 2539 2243 606 213 8 8 chr1 19313349 19313476 -223350877 - MER3 DNA MER1_type -82 127 48 243 365 0 0 chr1 19314000 19314104 -223350249 + (TG)n Simple_repeat Simple_repeat 1 104 0 204 380 23 12 chr1 19314159 19314330 -223350023 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 285 235 0 51 chr1 19314388 19314486 -223349867 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 294 290 5 10 chr1 19314515 19314725 -223349628 + (TG)n Simple_repeat Simple_repeat 1 208 0 278 316 0 10 chr1 19315081 19315179 -223349174 + CT-rich Low_complexity Low_complexity 2 98 0 256 246 18 0 chr1 19315359 19315416 -223348937 + MIR3 SINE MIR 102 159 -49 294 276 133 0 chr1 19315709 19315807 -223348546 - MIR SINE MIR -62 146 36 186 256 0 0 chr1 19316010 19316049 -223348304 - L2 LINE L2 -12 3301 3263 * 311 255 88 0 chr1 19316045 19316147 -223348206 - MIR SINE MIR -72 190 80 369 286 87 32 chr1 19316987 19317172 -223347181 + MIR SINE MIR 68 262 0 3819 103 37 35 chr1 19317199 19317719 -223346634 + L1MA4A LINE L1 5643 6166 -137 2323 122 0 3 chr1 19317719 19318031 -223346322 + AluSx SINE Alu 1 311 -1 3819 103 37 35 chr1 19318031 19318159 -223346194 + L1MA4A LINE L1 6166 6292 -11 834 272 19 3 chr1 19318429 19318658 -223345695 + MIR SINE MIR 31 256 -6 2538 75 3 0 chr1 19318698 19319006 -223345347 - AluY SINE Alu 0 311 3 367 265 36 36 chr1 19319428 19319566 -223344787 - MIR SINE MIR -61 147 52 625 288 24 19 chr1 19319653 19319858 -223344495 - MIR SINE MIR -6 256 51 981 108 12 6 chr1 19320967 19321297 -223343056 + (TGGA)n Simple_repeat Simple_repeat 1 332 0 181 295 39 39 chr1 19323560 19323638 -223340715 - L3b LINE CR1 -135 1448 1371 23 33 0 0 chr1 19324348 19324378 -223339975 + AT_rich Low_complexity Low_complexity 1 30 0 221 212 30 0 chr1 19325205 19325271 -223339082 + (TG)n Simple_repeat Simple_repeat 2 69 0 299 327 10 10 chr1 19325520 19325621 -223338732 + L2 LINE L2 3169 3269 -3 944 146 21 0 chr1 19325839 19325983 -223338370 - FAM SINE Alu -15 170 24 997 194 44 9 chr1 19326010 19326237 -223338116 - LTR16A1 LTR ERVL -55 402 168 523 280 21 0 chr1 19326298 19326441 -223337912 - LTR16A1 LTR ERVL -311 146 1 293 290 80 14 chr1 19326844 19326982 -223337371 + MIR3 SINE MIR 38 184 -24 276 221 38 76 chr1 19327209 19327340 -223337013 - MLT1L LTR MaLR -385 126 1 209 187 69 0 chr1 19327817 19327882 -223336471 + MIR SINE MIR 75 112 -96 748 237 45 15 chr1 19327909 19328215 -223336138 - MLT1I LTR MaLR -29 380 38 249 264 150 36 chr1 19328395 19328562 -223335791 - MIR SINE MIR -12 250 65 389 341 63 10 chr1 19328884 19329089 -223335264 - MIR SINE MIR -45 217 2 457 219 0 44 chr1 19329174 19329288 -223335065 - MLT1H LTR MaLR -13 536 428 1555 259 56 52 chr1 19329288 19329879 -223334474 + MLT1E LTR MaLR 1 593 0 294 200 0 43 chr1 19330050 19330120 -223334233 - MLT1H LTR MaLR -396 153 87 595 228 60 27 chr1 19330658 19330842 -223333511 + MIR SINE MIR 18 207 -55 1166 220 152 28 chr1 19331439 19332038 -223332315 - L1MDb LINE L1 -3900 2640 1968 1419 187 15 18 chr1 19332045 19332318 -223332035 + MSTB LTR MaLR 155 426 0 258 294 0 0 chr1 19332498 19332583 -223331770 + MLT1I LTR MaLR 323 407 -2 623 152 19 0 chr1 19332659 19332764 -223331589 + L1MC1 LINE L1 6056 6162 -171 2494 140 29 14 chr1 19332764 19333179 -223331174 + MSTA LTR MaLR 1 421 -7 820 201 5 11 chr1 19333179 19333363 -223330990 + L1MC1 LINE L1 6151 6333 0 2159 72 19 0 chr1 19333364 19333627 -223330726 + AluY SINE Alu 36 303 -8 450 252 68 38 chr1 19333631 19333897 -223330456 - HAL1b LINE L1 -404 944 671 1122 220 51 57 chr1 19333916 19334407 -223329946 - L1M3b LINE L1 -4520 1951 1506 861 268 38 90 chr1 19334402 19334903 -223329450 - L1MDb LINE L1 -5160 1383 909 * 332 308 135 24 chr1 19334959 19335167 -223329186 - L1MDb LINE L1 -5598 932 702 2058 133 7 0 chr1 19335488 19335774 -223328579 + AluSx SINE Alu 1 288 -24 509 80 13 0 chr1 19335774 19335849 -223328504 + (GGA)n Simple_repeat Simple_repeat 1 76 0 2205 110 0 3 chr1 19336060 19336352 -223328001 - AluSg SINE Alu -12 298 8 2010 91 0 4 chr1 19336359 19336611 -223327742 - AluSg SINE Alu -10 300 50 435 253 58 58 chr1 19336963 19337075 -223327278 + MER5B DNA MER1_type 1 115 -63 1543 145 65 36 chr1 19337075 19337351 -223327002 - AluJb SINE Alu -25 287 4 435 253 58 58 chr1 19337351 19337412 -223326941 + MER5B DNA MER1_type 114 174 -4 1222 228 75 19 chr1 19338303 19338663 -223325690 - MER77 LTR ERV1 -11 594 215 354 271 0 0 chr1 19338680 19338765 -223325588 - MLT1I LTR MaLR -2 407 323 328 287 9 32 chr1 19338845 19338962 -223325391 - MLT1J LTR MaLR -231 199 73 453 332 73 0 chr1 19339637 19339842 -223324511 - MIR SINE MIR -25 237 18 475 245 44 25 chr1 19339879 19340038 -223324315 - L1MC5 LINE L1 -97 7864 7703 363 314 54 22 chr1 19340187 19340372 -223323981 + MIR SINE MIR 12 202 -60 680 254 42 0 chr1 19340413 19340578 -223323775 + MIR SINE MIR 74 245 -17 1167 152 18 42 chr1 19340723 19340940 -223323413 + MER20 DNA MER1_type 8 219 0 253 313 21 10 chr1 19341363 19341459 -223322894 + MIR SINE MIR 25 121 -141 192 158 0 0 chr1 19341548 19341586 -223322767 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 972 299 154 28 chr1 19341597 19342300 -223322053 - L2 LINE L2 -462 2852 2062 260 313 10 0 chr1 19342608 19342704 -223321649 + MIR SINE MIR 59 155 -107 392 280 48 8 chr1 19342972 19343048 -223321305 + MER5B DNA MER1_type 49 133 -45 333 68 0 0 chr1 19343048 19343092 -223321261 + (CAT)n Simple_repeat Simple_repeat 2 45 0 392 280 48 8 chr1 19343092 19343140 -223321213 + MER5B DNA MER1_type 133 178 0 341 294 15 22 chr1 19343402 19343538 -223320815 - MIR SINE MIR -50 212 78 197 196 71 0 chr1 19343610 19343666 -223320687 + L2 LINE L2 3213 3272 0 575 242 78 7 chr1 19344176 19344329 -223320024 - MER58B DNA MER1_type 0 341 178 2046 85 15 8 chr1 19344334 19344593 -223319760 - AluSx SINE Alu -51 261 1 274 314 48 24 chr1 19344986 19345110 -223319243 + MIR SINE MIR 20 146 -62 2487 137 23 30 chr1 19345214 19345598 -223318755 + MSTA LTR MaLR 1 383 -45 1948 162 0 3 chr1 19345598 19345894 -223318459 - AluSx SINE Alu -17 295 1 2487 137 23 30 chr1 19345894 19345939 -223318414 + MSTA LTR MaLR 383 427 -1 216 316 44 26 chr1 19346439 19346553 -223317800 + MIR SINE MIR 106 221 -41 184 197 0 106 chr1 19347374 19347440 -223316913 + MIR SINE MIR 78 136 -72 407 237 32 0 chr1 19347541 19347634 -223316719 + MIR SINE MIR 90 185 -77 337 272 136 0 chr1 19347786 19347889 -223316464 + MIR SINE MIR 30 146 -62 238 338 123 46 chr1 19348593 19348960 -223315393 - L2 LINE L2 -5 3267 2873 566 279 73 0 chr1 19349061 19349226 -223315127 - MIR SINE MIR -34 228 52 372 22 0 0 chr1 19349230 19349275 -223315078 + (TG)n Simple_repeat Simple_repeat 2 46 0 2243 123 0 0 chr1 19349276 19349577 -223314776 - AluSx SINE Alu -11 301 1 696 220 57 6 chr1 19349855 19350032 -223314321 - MER5A DNA MER1_type -3 186 1 190 250 100 0 chr1 19350106 19350166 -223314187 - MIR SINE MIR -102 160 95 463 284 130 25 chr1 19350229 19350584 -223313769 + L2 LINE L2 2921 3312 -1 327 306 83 23 chr1 19351009 19351225 -223313128 - L1MC4a LINE L1 -1777 6031 5803 298 341 81 0 chr1 19351309 19351514 -223312839 + MIR SINE MIR 34 256 -6 315 331 59 49 chr1 19352064 19352369 -223311984 - L1ME4a LINE L1 -221 5900 5593 629 241 74 5 chr1 19352944 19353166 -223311187 + MIR SINE MIR 10 248 -14 231 278 0 28 chr1 19353859 19353931 -223310422 + C-rich Low_complexity Low_complexity 5 74 0 404 310 47 18 chr1 19355122 19355293 -223309060 + MIR SINE MIR 12 187 -75 810 236 65 8 chr1 19355570 19355811 -223308542 - MIR SINE MIR -1 261 5 229 361 38 44 chr1 19356073 19356231 -223308122 + MIR3 SINE MIR 9 165 -43 195 42 0 0 chr1 19556313 19556337 -223108016 + (G)n Simple_repeat Simple_repeat 1 24 0 1328 53 0 25 chr1 19556494 19557028 -223107325 + (TCCA)n Simple_repeat Simple_repeat 1 520 0 202 338 54 0 chr1 19557032 19557106 -223107247 - L2 LINE L2 -4 3309 3232 270 162 126 18 chr1 19558117 19558202 -223106151 + MIR SINE MIR 21 106 -102 198 329 14 0 chr1 19559007 19559077 -223105276 + MER5A DNA MER1_type 119 189 0 * 519 244 16 19 chr1 19559077 19559218 -223105135 + MIR SINE MIR 31 173 -41 229 281 135 0 chr1 19559331 19559427 -223104926 + MIR SINE MIR 33 141 -67 434 317 217 7 chr1 19559822 19560122 -223104231 - L2 LINE L2 -1 3312 2950 353 248 117 29 chr1 19560284 19560421 -223103932 + MIR SINE MIR 58 206 -56 243 213 40 40 chr1 19560774 19560849 -223103504 + MIR SINE MIR 80 154 -108 1094 127 33 6 chr1 19560851 19561032 -223103321 + LTR23 LTR ERV1 4 189 -248 1967 137 0 20 chr1 19561441 19561747 -223102606 - AluSx SINE Alu -12 300 1 2302 50 7 7 chr1 19562151 19562482 -223101871 + AluY SINE Alu 1 311 0 253 270 125 46 chr1 19563196 19563348 -223101005 + MIR3 SINE MIR 20 183 -25 272 176 20 0 chr1 19563361 19563412 -223100941 - MER81 DNA DNA -62 52 1 469 307 55 78 chr1 19563449 19563667 -223100686 + MIR SINE MIR 39 251 -11 386 313 39 12 chr1 19563689 19563896 -223100457 + MIR SINE MIR 34 250 -12 2180 99 0 0 chr1 19564443 19564774 -223099579 + AluSx SINE Alu 1 331 0 259 235 37 37 chr1 19565040 19565121 -223099232 + MIR SINE MIR 93 173 -89 394 285 109 18 chr1 19565215 19565380 -223098973 - MIR SINE MIR -78 184 5 342 115 0 0 chr1 19566042 19566094 -223098259 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 222 247 290 0 chr1 19566168 19566261 -223098092 - L2 LINE L2 -1 3271 3152 905 115 0 8 chr1 19566384 19566514 -223097839 + FLAM_C SINE Alu 1 129 -14 2042 122 43 9 chr1 19566514 19566843 -223097510 - THE1C LTR MaLR -35 340 1 210 333 50 50 chr1 19567107 19567248 -223097105 - MIR SINE MIR -74 188 48 251 314 73 16 chr1 19567301 19567425 -223096928 - L2 LINE L2 -20 3293 3163 216 0 0 0 chr1 19570203 19570227 -223094126 + (CCTG)n Simple_repeat Simple_repeat 2 25 0 288 0 0 0 chr1 19570562 19570594 -223093759 + (CA)n Simple_repeat Simple_repeat 2 33 0 370 256 35 0 chr1 19572610 19572696 -223091657 - MIR SINE MIR -82 180 92 1355 204 20 0 chr1 19573936 19574230 -223090123 - AluSq SINE Alu -13 300 1 723 242 112 0 chr1 19574322 19574545 -223089808 + MER90 LTR ERV1 328 575 0 282 304 152 8 chr1 19574743 19574868 -223089485 - MIR SINE MIR -106 156 14 2020 111 0 26 chr1 19575411 19575717 -223088636 - AluSx SINE Alu -14 298 1 430 254 124 37 chr1 19576215 19576432 -223087921 + MER102b DNA MER1_type 75 310 -31 312 277 28 37 chr1 19577670 19577791 -223086562 + MIR3 SINE MIR 45 164 -44 499 286 132 5 chr1 19578365 19578585 -223085768 + MIR SINE MIR 9 256 -6 219 163 0 61 chr1 19578740 19578789 -223085564 + MIR SINE MIR 205 250 -12 409 186 39 49 chr1 19578828 19578930 -223085423 + MIR SINE MIR 62 162 -100 211 315 111 31 chr1 19579677 19579839 -223084514 + MIR3 SINE MIR 1 175 -33 235 261 54 45 chr1 19579984 19580095 -223084258 + MIR SINE MIR 59 170 -92 306 273 13 0 chr1 19580412 19580489 -223083864 - MER116 DNA Mariner 0 80 3 222 118 0 0 chr1 19582270 19582304 -223082049 + (TTC)n Simple_repeat Simple_repeat 3 36 0 684 225 9 99 chr1 19582397 19582619 -223081734 - MER20 DNA MER1_type -17 202 1 367 276 181 0 chr1 19582888 19583098 -223081255 - L1ME4a LINE L1 -1 6120 5873 309 279 58 0 chr1 19583103 19583189 -223081164 + L2 LINE L2 3222 3312 -1 399 273 43 29 chr1 19583314 19583453 -223080900 - MIR SINE MIR -55 207 67 324 223 68 29 chr1 19583958 19584061 -223080292 + MIR SINE MIR 80 186 -76 727 275 24 24 chr1 19584301 19584512 -223079841 + MIR SINE MIR 51 261 -1 201 39 0 0 chr1 19584694 19584720 -223079633 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1867 128 3 24 chr1 19584722 19585010 -223079343 - AluJb SINE Alu -30 282 1 271 254 49 16 chr1 19585106 19585228 -223079125 + MIR SINE MIR 21 146 -62 374 264 87 34 chr1 19585329 19585434 -223078919 + MIR SINE MIR 37 135 -127 1341 162 25 30 chr1 19585434 19585474 -223078879 - MER46A DNA MER2_type -2497 234 195 2061 129 0 10 chr1 19585474 19585783 -223078570 - AluSx SINE Alu -6 306 1 1341 162 25 30 chr1 19585783 19585977 -223078376 - MER46A DNA MER2_type -2536 195 1 374 264 87 34 chr1 19585977 19586078 -223078275 + MIR SINE MIR 135 253 -9 2224 111 0 0 chr1 19586127 19586433 -223077920 - AluSx SINE Alu -6 306 1 811 219 33 14 chr1 19586435 19586645 -223077708 + LTR23 LTR ERV1 224 437 0 2054 117 0 7 chr1 19586888 19587188 -223077165 + AluSx SINE Alu 1 298 -14 291 114 0 0 chr1 19587472 19587516 -223076837 + (T)n Simple_repeat Simple_repeat 1 44 0 218 291 65 83 chr1 19588387 19588617 -223075736 + L2 LINE L2 2575 2800 -514 431 276 17 0 chr1 19589337 19589453 -223074900 - MIR SINE MIR -105 157 40 199 266 101 13 chr1 19590165 19590244 -223074109 - MIR SINE MIR -88 174 89 373 245 9 28 chr1 19590473 19590579 -223073774 - MER53 DNA DNA -85 104 1 410 264 50 0 chr1 19591216 19591337 -223073016 + L3 LINE CR1 1344 1470 -107 297 279 165 14 chr1 19591405 19591562 -223072791 + MIR SINE MIR 3 180 -67 206 215 139 13 chr1 19592075 19592154 -223072199 - MIR3 SINE MIR -33 175 87 286 221 59 0 chr1 19592298 19592366 -223071987 - MIR SINE MIR -74 188 117 549 217 196 0 chr1 19592594 19592737 -223071616 + MER58C DNA MER1_type 45 215 0 633 238 20 7 chr1 19592885 19593036 -223071317 + MIR SINE MIR 21 173 -89 2132 110 7 3 chr1 19593036 19593345 -223071008 + AluSp SINE Alu 1 310 -3 1661 141 4 0 chr1 19593376 19593624 -223070729 + AluJo SINE Alu 1 249 -63 2301 94 3 0 chr1 19593944 19594252 -223070101 + AluSx SINE Alu 1 309 -3 2057 128 0 3 chr1 19594736 19595032 -223069321 - AluSx SINE Alu -17 295 1 203 79 26 0 chr1 19595260 19595298 -223069055 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 215 357 12 12 chr1 19595841 19595925 -223068428 - MIR SINE MIR -102 106 23 2314 71 0 0 chr1 19596506 19596800 -223067553 - AluY SINE Alu -17 294 1 2391 80 0 3 chr1 19597184 19597498 -223066855 - AluSq SINE Alu 0 313 1 2316 91 0 3 chr1 19598527 19598836 -223065517 - AluSc SINE Alu -1 308 1 492 288 92 38 chr1 19599026 19599373 -223064980 - L1ME LINE L1 -333 5788 5423 274 262 5 64 chr1 19600127 19600314 -223064039 + G-rich Low_complexity Low_complexity 5 180 0 187 263 66 53 chr1 19601214 19601290 -223063063 - MIR SINE MIR -55 153 77 287 167 15 0 chr1 19602270 19602336 -223062017 + C-rich Low_complexity Low_complexity 3 69 0 292 283 148 67 chr1 19602879 19603162 -223061191 + L2 LINE L2 2871 3176 -137 2325 90 3 0 chr1 19603233 19603544 -223060809 - AluSx SINE Alu 0 312 1 1730 147 39 7 chr1 19603544 19603830 -223060523 - AluJb SINE Alu -17 295 1 794 157 72 12 chr1 19603836 19604002 -223060351 - L1MA8 LINE L1 -1 6290 6115 1441 139 52 38 chr1 19604002 19604269 -223060084 - AluJo SINE Alu -3 309 39 2695 183 19 4 chr1 19604272 19604807 -223059546 - L1MA8 LINE L1 -161 6130 5588 210 270 11 67 chr1 19606663 19606752 -223057601 + MIR SINE MIR 60 143 -65 215 239 11 125 chr1 19607121 19607146 -223057207 + MIR SINE MIR 8 34 -228 2091 119 34 3 chr1 19607146 19607439 -223056914 + AluSx SINE Alu 1 302 -10 215 239 11 125 chr1 19607439 19607501 -223056852 + MIR SINE MIR 34 85 -177 2405 210 114 72 chr1 19607915 19608005 -223056348 + L1MC4a LINE L1 6523 6608 -1200 2459 100 0 0 chr1 19608005 19608314 -223056039 - AluSg SINE Alu -1 309 1 2405 210 114 72 chr1 19608314 19608777 -223055576 + L1MC4a LINE L1 6608 7050 -758 2383 92 0 29 chr1 19608777 19609092 -223055261 + AluSc SINE Alu 1 306 -3 2405 210 114 72 chr1 19609092 19609668 -223054685 + L1MC4a LINE L1 7050 7712 -96 2370 101 0 3 chr1 19609735 19610043 -223054310 + AluSg SINE Alu 1 307 -3 1892 164 3 20 chr1 19610118 19610416 -223053937 + AluJb SINE Alu 3 295 -17 184 402 27 36 chr1 19610905 19611017 -223053336 - L3b LINE CR1 -44 1539 1429 509 296 30 18 chr1 19611158 19611327 -223053026 - MIR SINE MIR -3 259 89 871 225 6 0 chr1 19611440 19611600 -223052753 - AluSg/x SINE Alu -20 292 132 2331 105 7 0 chr1 19611604 19611908 -223052445 - AluSq SINE Alu -7 306 1 263 115 0 115 chr1 19611925 19611986 -223052367 - MER69 DNA AcHobo -22 2504 2451 1684 142 91 11 chr1 19611997 19612017 -223052336 - AluSg SINE Alu -4 306 289 686 53 11 0 chr1 19612017 19612112 -223052241 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 1684 142 91 11 chr1 19612112 19612365 -223051988 - AluSg SINE Alu -21 289 11 459 246 26 0 chr1 19612374 19612488 -223051865 - MER69 DNA AcHobo -1075 151 35 388 293 12 24 chr1 19612713 19612880 -223051473 - MER5A DNA MER1_type -13 166 1 199 314 24 32 chr1 19613164 19613288 -223051065 - L2 LINE L2 -165 3107 2985 * 558 274 50 84 chr1 19613274 19613595 -223050758 - L2 LINE L2 -45 3227 2918 1309 231 126 47 chr1 19613663 19614212 -223050141 + MLT1G1 LTR MaLR 4 595 0 538 344 108 7 chr1 19614347 19614652 -223049701 - L3 LINE CR1 -2 1575 1240 329 292 167 6 chr1 19614729 19614897 -223049456 + MIR SINE MIR 67 261 -1 796 54 9 0 chr1 19615550 19615661 -223048692 - L1PA4 LINE L1 0 6155 6044 263 304 109 27 chr1 19616174 19616358 -223047995 + MLT1K LTR MaLR 150 348 -240 1541 178 4 11 chr1 19616440 19616715 -223047638 - AluJo SINE Alu 0 312 40 217 294 15 0 chr1 19616862 19616930 -223047423 - MIR3 SINE MIR -50 158 90 1935 157 3 26 chr1 19618246 19618551 -223045802 - AluJo SINE Alu -14 298 1 296 277 176 14 chr1 19618559 19618707 -223045646 + Charlie8 DNA MER1_type 83 254 -2163 2046 138 7 0 chr1 19618901 19619192 -223045161 - AluSx SINE Alu -19 293 1 483 325 31 0 chr1 19619309 19619472 -223044881 - MIR SINE MIR -54 208 41 281 287 139 0 chr1 19619540 19619641 -223044712 - MER63A DNA MER1_type 0 210 96 200 298 35 0 chr1 19619816 19619873 -223044480 - MIR3 SINE MIR -41 167 109 356 159 0 79 chr1 19620186 19620249 -223044104 - AluSg/x SINE Alu -111 191 137 306 261 99 18 chr1 19620250 19620361 -223043992 + MLT1K LTR MaLR 433 552 -36 830 216 111 11 chr1 19620896 19621137 -223043216 + MIR SINE MIR 1 262 0 317 209 76 38 chr1 19621129 19621234 -223043119 - MIR SINE MIR -107 155 47 * 228 250 0 115 chr1 19621381 19621411 -223042942 - MIR3 SINE MIR -28 180 148 1128 197 99 3 chr1 19621411 19621705 -223042648 + MER33 DNA MER1_type 3 324 0 228 250 0 115 chr1 19621705 19621778 -223042575 - MIR3 SINE MIR -60 148 89 2433 98 0 0 chr1 19622178 19622485 -223041868 + AluSq SINE Alu 1 307 -6 182 118 29 0 chr1 19622509 19622543 -223041810 + (CA)n Simple_repeat Simple_repeat 1 35 0 628 273 49 0 chr1 19622543 19622726 -223041627 + MER112 DNA MER1_type 67 258 -2 210 313 195 0 chr1 19622762 19622890 -223041463 + MIR SINE MIR 110 262 0 1449 167 0 13 chr1 19623196 19623423 -223040930 + AluJo SINE Alu 34 257 -55 445 305 33 33 chr1 19623533 19623743 -223040610 + MIR SINE MIR 47 256 -6 244 290 0 0 chr1 19623805 19623867 -223040486 + L3 LINE CR1 1416 1477 -100 203 204 0 0 chr1 19623898 19623942 -223040411 + L2 LINE L2 3270 3313 0 1889 156 14 7 chr1 19624024 19624313 -223040040 - AluJb SINE Alu -14 298 8 585 214 84 8 chr1 19624313 19624444 -223039909 - MER5B DNA MER1_type -34 144 4 1116 154 42 0 chr1 19624487 19624701 -223039652 + L1MA8 LINE L1 6067 6289 -2 182 256 0 0 chr1 19625001 19625040 -223039313 - L2 LINE L2 -86 3186 3148 227 209 93 23 chr1 19625419 19625505 -223038848 + L2 LINE L2 3161 3252 -61 207 264 157 25 chr1 19626506 19626627 -223037726 + L2 LINE L2 2533 2669 -645 1761 140 0 51 chr1 19626762 19627055 -223037298 - AluJo SINE Alu -14 298 21 622 228 74 0 chr1 19627702 19627864 -223036489 - MER45A DNA AcHobo 0 178 5 1326 217 101 42 chr1 19627868 19628302 -223036051 - MLT1C LTR MaLR -6 461 2 227 257 87 55 chr1 19629697 19629915 -223034438 - L2 LINE L2 -182 3090 2866 231 311 51 20 chr1 19629952 19630148 -223034205 - L2 LINE L2 -557 2757 2556 371 289 31 8 chr1 19630664 19630792 -223033561 + MIR SINE MIR 15 145 -117 2117 129 7 0 chr1 19631323 19631610 -223032743 + AluSx SINE Alu 2 290 -22 263 321 0 0 chr1 19631939 19632020 -223032333 + L1ME4a LINE L1 5967 6047 -74 785 227 64 10 chr1 19632049 19632252 -223032101 + MER58C DNA MER1_type 2 215 0 927 174 14 7 chr1 19632358 19632766 -223031587 + CT-rich Low_complexity Low_complexity 1 410 0 1904 131 7 4 chr1 19632789 19633064 -223031289 - AluSx SINE Alu -23 289 14 439 188 19 32 chr1 19633124 19633278 -223031075 + CT-rich Low_complexity Low_complexity 4 155 0 202 180 67 11 chr1 19633745 19633834 -223030519 + (CAGG)n Simple_repeat Simple_repeat 3 96 0 550 221 210 10 chr1 19634234 19634429 -223029924 + MIR SINE MIR 23 256 -6 3305 210 17 31 chr1 19635451 19635585 -223028768 - L1ME LINE L1 -2023 4621 4487 2058 126 10 26 chr1 19635585 19635895 -223028458 - AluSx SINE Alu -7 305 1 3305 210 17 31 chr1 19635895 19636573 -223027780 - L1ME LINE L1 -2157 4487 3820 446 199 68 7 chr1 19636572 19636718 -223027635 - L1MA10 LINE L1 0 6334 6180 * 2426 100 10 0 chr1 19636769 19637079 -223027274 + AluSp SINE Alu 1 313 0 426 251 72 0 chr1 19637091 19637258 -223027095 - L1MEc LINE L1 -5410 986 808 1862 107 23 8 chr1 19637271 19637534 -223026819 + AluSq SINE Alu 21 287 -26 319 51 0 0 chr1 19637562 19637601 -223026752 - MER4B LTR ERV1 -73 537 499 2915 238 59 31 chr1 19637602 19638214 -223026139 - L1MEc LINE L1 -5571 825 185 2194 138 3 0 chr1 19638214 19638518 -223025835 - AluSx SINE Alu -7 305 1 2915 238 59 31 chr1 19638518 19638681 -223025672 - L1MEc LINE L1 -6211 185 28 1503 217 43 20 chr1 19638670 19639177 -223025176 - L1ME LINE L1 -2806 3838 3320 * 414 250 74 0 chr1 19639178 19639326 -223025027 - L1ME LINE L1 -3446 3198 3040 1284 258 82 59 chr1 19639327 19640205 -223024148 - L1ME LINE L1 -3661 2983 2127 2030 122 0 25 chr1 19640205 19640484 -223023869 - AluSx SINE Alu -40 272 1 1284 258 82 59 chr1 19640484 19640667 -223023686 - L1ME LINE L1 -4517 2127 1950 1772 95 4 0 chr1 19640667 19640898 -223023455 - AluSg/x SINE Alu 0 312 81 1284 258 82 59 chr1 19640898 19641147 -223023206 - L1ME LINE L1 -4694 1950 1679 293 214 30 42 chr1 19641491 19641620 -223022733 - L1ME LINE L1 -5931 703 40 22 0 0 0 chr1 19641672 19641694 -223022659 + AT_rich Low_complexity Low_complexity 1 22 0 924 105 8 0 chr1 19641866 19641990 -223022363 + AluY SINE Alu 1 125 -186 741 143 8 8 chr1 19642027 19642146 -223022207 - L1MB3 LINE L1 -165 6018 5897 1900 152 40 0 chr1 19642146 19642442 -223021911 - AluJb SINE Alu -4 308 1 351 55 36 0 chr1 19642456 19642511 -223021842 - L1PA8 LINE L1 -2 6170 6114 2292 110 0 0 chr1 19642514 19642941 -223021412 - AluSg SINE Alu 0 427 1 1886 220 23 25 chr1 19642944 19643425 -223020928 - L1M4 LINE L1 -816 5330 4851 * 6206 73 25 3 chr1 19643423 19644290 -223020063 + L1PA13 LINE L1 5259 6144 -19 1318 216 18 0 chr1 19644309 19644592 -223019761 - L1M4 LINE L1 -1286 4860 4573 421 253 34 28 chr1 19644648 19644783 -223019570 - L1ME4a LINE L1 -254 5867 5729 2145 120 0 41 chr1 19644783 19645099 -223019254 - AluSx SINE Alu -9 303 1 421 253 34 28 chr1 19645099 19645141 -223019212 - L1ME4a LINE L1 -392 5729 5689 186 343 79 21 chr1 19645221 19645239 -223019114 - MIR3 SINE MIR -30 178 162 323 127 155 28 chr1 19645239 19645310 -223019043 + MADE1 DNA Mariner 1 80 0 186 343 79 21 chr1 19645310 19645431 -223018922 - MIR3 SINE MIR -46 162 31 * 271 254 0 14 chr1 19645397 19645468 -223018885 + MIR SINE MIR 45 114 -148 1632 128 110 11 chr1 19645601 19645883 -223018470 - AluJb SINE Alu -2 310 1 25 90 0 0 chr1 19645918 19645985 -223018368 + AT_rich Low_complexity Low_complexity 1 67 0 2716 180 64 46 chr1 19646110 19646765 -223017588 + LTR65 LTR ERV1 2 668 -1 2472 74 0 3 chr1 19646770 19647068 -223017285 - AluSc SINE Alu -12 297 1 1005 164 11 11 chr1 19647144 19647327 -223017026 - MER5A DNA MER1_type -6 183 1 194 337 71 0 chr1 19647346 19647444 -223016909 + MIR SINE MIR 158 262 0 1942 167 3 3 chr1 19647656 19647961 -223016392 + AluJb SINE Alu 1 305 -7 719 109 0 0 chr1 19648056 19648157 -223016196 - AluSq/x SINE Alu -176 137 37 575 141 0 8 chr1 19648299 19648523 -223015830 - AluJb SINE Alu -15 297 1 332 329 100 0 chr1 19649314 19649484 -223014869 - MIR SINE MIR -45 217 31 2351 104 0 0 chr1 19649844 19650143 -223014210 - AluSc SINE Alu -10 299 1 256 339 118 0 chr1 19650361 19650488 -223013865 - L2 LINE L2 -19 3253 3112 2172 101 3 14 chr1 19650504 19650801 -223013552 + AluSq SINE Alu 1 294 -19 255 250 0 0 chr1 19651737 19651805 -223012548 + (TG)n Simple_repeat Simple_repeat 1 68 0 188 366 11 11 chr1 19651805 19651898 -223012455 + L2 LINE L2 3180 3272 0 319 274 17 34 chr1 19651940 19652057 -223012296 - MIR SINE MIR -62 146 32 345 244 56 16 chr1 19653108 19653253 -223011100 - MIR SINE MIR -58 150 31 558 284 88 0 chr1 19653681 19653885 -223010468 + MIR SINE MIR 35 256 -6 374 325 48 18 chr1 19653928 19654094 -223010259 + MIR SINE MIR 31 201 -61 343 207 37 0 chr1 19654137 19654219 -223010134 - MER5A DNA MER1_type -96 93 9 2382 98 3 0 chr1 19654464 19654759 -223009594 + AluSg SINE Alu 1 296 -14 309 93 19 0 chr1 19654787 19654841 -223009512 + MADE1 DNA Mariner 26 80 0 506 243 9 9 chr1 19655980 19656091 -223008262 + MER81 DNA DNA 3 113 -1 294 256 225 16 chr1 19656092 19656221 -223008132 + MIR SINE MIR 104 259 -3 805 237 27 5 chr1 19656383 19656569 -223007784 + MIR3 SINE MIR 12 201 -7 225 210 0 0 chr1 19656827 19656889 -223007464 + (TTCA)n Simple_repeat Simple_repeat 2 63 0 644 222 22 4 chr1 19656901 19657082 -223007271 + MIR SINE MIR 1 262 0 196 268 71 0 chr1 19657087 19657143 -223007210 - L2 LINE L2 -1 3271 3212 2301 133 33 25 chr1 19657489 19657850 -223006503 - THE1B LTR MaLR 0 364 1 343 194 24 40 chr1 19657986 19658110 -223006243 - Charlie7 DNA MER1_type -60 2552 2431 1541 148 0 29 chr1 19658116 19658359 -223005994 + AluJo SINE Alu 1 236 -76 563 191 86 0 chr1 19658642 19658747 -223005606 + MER81 DNA DNA 1 114 0 2047 99 67 3 chr1 19658798 19659082 -223005271 + AluSg SINE Alu 9 310 0 2585 233 23 11 chr1 19660003 19660832 -223003521 - L1MEc LINE L1 -3372 2843 2038 867 166 0 0 chr1 19660844 19661015 -223003338 + AluJb SINE Alu 147 317 0 1679 252 94 59 chr1 19661066 19661696 -223002657 - MLT2F LTR ERVL -2 661 10 2747 274 65 24 chr1 19661715 19662255 -223002098 - L1MEc LINE L1 -4407 1989 1472 1868 68 0 0 chr1 19662255 19662476 -223001877 + AluY SINE Alu 1 221 -90 2747 274 65 24 chr1 19662476 19663064 -223001289 - L1MEc LINE L1 -4924 1472 815 461 217 0 58 chr1 19663557 19663677 -223000676 + MER3 DNA MER1_type 1 113 -96 2818 119 24 32 chr1 19663840 19664145 -223000208 - LTR46 LTR ERV1 -2 458 157 2561 54 0 0 chr1 19664145 19664439 -222999914 - AluY SINE Alu -17 294 1 2818 119 24 32 chr1 19664439 19664595 -222999758 - LTR46 LTR ERV1 -303 157 1 520 189 57 25 chr1 19664849 19664971 -222999382 - MIR SINE MIR -116 146 21 267 244 88 44 chr1 19666845 19667005 -222997348 + L2 LINE L2 2925 3091 -181 1002 73 0 0 chr1 19667449 19667585 -222996768 + (TTC)n Simple_repeat Simple_repeat 2 137 0 864 144 0 0 chr1 19667587 19667705 -222996648 - FLAM_C SINE Alu -15 118 1 961 299 34 44 chr1 19667754 19668170 -222996183 - L1MEc LINE L1 -5867 529 117 2185 127 3 13 chr1 19668170 19668484 -222995869 - AluSq SINE Alu -2 311 1 961 299 34 44 chr1 19668484 19668566 -222995787 - L1MEc LINE L1 -6279 117 36 268 288 250 8 chr1 19669212 19669344 -222995009 + MIR3 SINE MIR 24 187 -21 457 232 36 11 chr1 19670322 19670450 -222993903 + MIR SINE MIR 35 166 -58 231 203 0 0 chr1 19670698 19670762 -222993591 + (TTCA)n Simple_repeat Simple_repeat 2 65 0 251 242 16 0 chr1 19670762 19670824 -222993529 - L2 LINE L2 0 3313 3251 447 240 32 32 chr1 19670981 19671106 -222993247 + MIR SINE MIR 65 189 -73 715 239 143 0 chr1 19671168 19671377 -222992976 + MIR SINE MIR 16 254 -8 180 0 0 0 chr1 19671990 19672010 -222992343 + (GGA)n Simple_repeat Simple_repeat 1 20 0 180 125 0 0 chr1 19672242 19672274 -222992079 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 311 288 163 20 chr1 19672276 19672429 -222991924 - L2 LINE L2 -2 3270 3096 2105 135 0 0 chr1 19672616 19672905 -222991448 + AluSx SINE Alu 1 289 -23 235 261 0 0 chr1 19672985 19673031 -222991322 - L2 LINE L2 -205 3067 3022 * 405 291 69 46 chr1 19673027 19673202 -222991151 - L2 LINE L2 0 3313 3135 204 265 166 81 chr1 19673213 19673424 -222990929 - L2 LINE L2 -338 2976 2748 2181 143 10 0 chr1 19673424 19673731 -222990622 - AluSx SINE Alu -2 310 1 402 318 82 64 chr1 19673747 19673967 -222990386 - L1ME2 LINE L1 -227 5937 5714 930 265 41 18 chr1 19673975 19674381 -222989972 - L1ME2 LINE L1 -526 5638 5225 2174 222 26 129 chr1 19674394 19675386 -222988967 - L2 LINE L2 -566 2748 1859 853 248 59 21 chr1 19675469 19675755 -222988598 - MLT1K LTR MaLR -160 428 132 2290 90 3 19 chr1 19675993 19676304 -222988049 - AluSg SINE Alu -4 306 1 836 171 131 9 chr1 19676305 19676527 -222987826 - Charlie5 DNA MER1_type -19 2593 2345 1264 162 25 0 chr1 19676531 19676735 -222987618 - AluJo SINE Alu -18 294 86 417 204 0 11 chr1 19676736 19676829 -222987524 - Charlie5 DNA MER1_type -264 2348 2257 2265 118 0 3 chr1 19676829 19677125 -222987228 + AluSx SINE Alu 1 295 -17 420 178 198 0 chr1 19677152 19677253 -222987100 - MER3 DNA MER1_type -41 168 48 300 269 134 0 chr1 19677260 19677394 -222986959 - MIR3 SINE MIR -54 154 3 369 300 33 33 chr1 19677594 19677714 -222986639 - L2 LINE L2 -9 3263 3144 686 229 45 0 chr1 19678195 19678352 -222986001 - MER45A DNA AcHobo -14 164 1 192 275 66 33 chr1 19678448 19678539 -222985814 - MIR SINE MIR -51 211 118 2214 130 3 3 chr1 19678673 19679139 -222985214 - AluSx SINE Alu 0 466 1 510 57 0 0 chr1 19679658 19679728 -222984625 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 764 290 69 54 chr1 19679736 19680143 -222984210 - L2 LINE L2 -21 3251 2839 314 305 122 46 chr1 19680329 19680431 -222983922 - L1ME4a LINE L1 -21 6100 6007 1879 146 7 40 chr1 19680431 19680571 -222983782 + AluJb SINE Alu 1 144 -168 2027 115 4 4 chr1 19680571 19680874 -222983479 + AluSx SINE Alu 6 308 0 1879 146 7 40 chr1 19680874 19681033 -222983320 + AluJb SINE Alu 144 291 -21 314 305 122 46 chr1 19681033 19681431 -222982922 - L1ME4a LINE L1 -114 6007 5562 243 0 0 0 chr1 19681827 19681854 -222982499 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1765 118 11 63 chr1 19681857 19682144 -222982209 - AluJb SINE Alu -32 280 9 423 0 0 0 chr1 19682626 19682673 -222981680 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1005 271 67 59 chr1 19682867 19683055 -222981298 - L1ME2 LINE L1 -220 5933 5748 1931 171 0 3 chr1 19683055 19683360 -222980993 - AluJo SINE Alu -8 304 1 1005 271 67 59 chr1 19683360 19683986 -222980367 - L1ME2 LINE L1 -405 5748 5139 2066 129 0 4 chr1 19683986 19684264 -222980089 - AluSc SINE Alu -32 277 1 1005 271 67 59 chr1 19684264 19684860 -222979493 - L1ME2 LINE L1 -1014 5139 4549 432 304 50 9 chr1 19684893 19685247 -222979106 - L1ME2 LINE L1 -877 1613 1356 657 159 8 0 chr1 19685249 19685554 -222978799 + CT-rich Low_complexity Low_complexity 1 180 0 1788 186 3 3 chr1 19685554 19685865 -222978488 - AluJb SINE Alu 0 616 1 328 243 0 47 chr1 19685942 19686036 -222978317 - L1ME2 LINE L1 -4875 1244 1154 1731 243 25 45 chr1 19686036 19686551 -222977802 - MLT1D LTR MaLR 0 505 1 328 243 0 47 chr1 19686551 19686563 -222977790 - L1ME2 LINE L1 -4965 1154 1143 711 263 31 8 chr1 19686584 19686839 -222977514 - L1ME2 LINE L1 -4962 1157 897 1211 242 134 40 chr1 19686839 19686933 -222977420 - L2 LINE L2 -1548 1766 1682 2741 110 3 0 chr1 19686933 19687306 -222977047 - THE1C LTR MaLR -1 374 1 1211 242 134 40 chr1 19687306 19687690 -222976663 - L2 LINE L2 -1632 1682 1243 1391 94 0 0 chr1 19687728 19687898 -222976455 + AluSq SINE Alu 2 171 -142 437 153 0 0 chr1 19687898 19687987 -222976366 + AluS SINE Alu 224 312 0 322 290 164 45 chr1 19688102 19688499 -222975854 + L2 LINE L2 2827 3270 -2 3320 172 72 61 chr1 19689048 19689647 -222974706 + L1MB7 LINE L1 5295 5907 -277 2563 125 28 39 chr1 19689647 19690078 -222974275 + MSTB LTR MaLR 1 426 0 3320 172 72 61 chr1 19690078 19690328 -222974025 + L1MB7 LINE L1 5907 6153 -31 2339 100 7 0 chr1 19690453 19690752 -222973601 - AluSx SINE Alu -11 301 1 213 240 0 0 chr1 19690766 19690816 -222973537 + A-rich Low_complexity Low_complexity 1 50 0 260 255 92 20 chr1 19690816 19690914 -222973439 + MIR SINE MIR 137 241 -21 420 232 286 69 chr1 19690914 19691263 -222973090 + LTR16C LTR ERVL 1 425 -66 370 106 16 0 chr1 19691280 19691341 -222973012 - AluSq/x SINE Alu -191 111 66 2020 136 0 0 chr1 19691657 19691937 -222972416 + AluJb SINE Alu 1 280 -32 213 39 0 0 chr1 19691939 19691965 -222972388 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1862 152 12 24 chr1 19691996 19692325 -222972028 - MER44D DNA MER2_type -8 601 7 585 234 123 18 chr1 19692331 19692502 -222971851 - MIR SINE MIR -27 235 47 198 167 0 0 chr1 19692889 19692925 -222971428 + CT-rich Low_complexity Low_complexity 2 37 0 2014 137 3 37 chr1 19692927 19693248 -222971105 - AluSx SINE Alu -2 310 1 214 357 0 0 chr1 19693433 19693489 -222970864 - L2 LINE L2 -12 3260 3205 755 275 90 5 chr1 19693598 19693820 -222970533 - MIR SINE MIR -1 261 21 273 261 65 11 chr1 19693927 19694019 -222970334 - L2 LINE L2 -243 3029 2933 666 174 0 0 chr1 19694331 19694452 -222969901 + FLAM_A SINE Alu 22 142 0 539 234 7 35 chr1 19694583 19694724 -222969629 + MIR SINE MIR 47 183 -79 805 240 132 36 chr1 19694736 19694783 -222969570 + MER113 DNA MER1_type? 24 65 -456 1491 184 20 65 chr1 19694783 19694995 -222969358 - MER58B DNA MER1_type -2079 341 121 1755 194 3 0 chr1 19694995 19695288 -222969065 - AluJo SINE Alu -18 294 1 1491 184 20 65 chr1 19695288 19695348 -222969005 - MER58B DNA MER1_type -2299 121 86 2308 109 0 0 chr1 19695348 19695641 -222968712 - AluSc SINE Alu -16 293 1 1491 184 20 65 chr1 19695641 19695720 -222968633 - MER58B DNA MER1_type -2334 86 5 805 240 132 36 chr1 19695720 19695848 -222968505 + MER113 DNA MER1_type? 65 179 -342 2374 92 0 0 chr1 19695848 19696141 -222968212 + AluSx SINE Alu 1 293 -19 805 240 132 36 chr1 19696141 19696380 -222967973 + MER113 DNA MER1_type? 179 479 -42 254 198 5 95 chr1 19696901 19697011 -222967342 + MIR SINE MIR 112 205 -3 239 321 60 0 chr1 19697082 19697166 -222967187 + MER102a DNA MER1_type 1 89 -241 1936 169 10 0 chr1 19697347 19697642 -222966711 - AluJo SINE Alu -14 298 1 24 0 0 0 chr1 19697647 19697671 -222966682 + AT_rich Low_complexity Low_complexity 1 24 0 2253 225 96 20 chr1 19697746 19698359 -222965994 - MER21B LTR ERV1 -111 752 93 26 0 0 0 chr1 19698417 19698443 -222965910 + AT_rich Low_complexity Low_complexity 1 26 0 354 186 0 147 chr1 19698452 19698581 -222965772 + MER102a DNA MER1_type 221 330 0 2052 122 148 16 chr1 19698647 19699025 -222965328 - MSTA LTR MaLR 0 428 1 341 254 15 181 chr1 19699033 19699133 -222965220 - MIR3 SINE MIR -3 259 227 2523 59 0 40 chr1 19699133 19699456 -222964897 + AluY SINE Alu 1 310 -1 341 254 15 181 chr1 19699456 19699615 -222964738 - MIR3 SINE MIR -35 227 43 340 314 38 0 chr1 19699736 19699841 -222964512 + MIR SINE MIR 88 196 -66 223 218 36 0 chr1 19699943 19699998 -222964355 + L2 LINE L2 3005 3061 -211 444 181 35 0 chr1 19700131 19700223 -222964130 - MIR SINE MIR -61 147 98 417 291 179 0 chr1 19700344 19700540 -222963813 + MIR SINE MIR 32 262 0 283 279 36 9 chr1 19700796 19700907 -222963446 + MIR SINE MIR 120 233 -29 267 243 6 0 chr1 19701172 19701243 -222963110 - L1ME LINE L1 -367 5803 5731 338 331 37 0 chr1 19701932 19702068 -222962285 + MIR SINE MIR 89 229 -33 444 228 79 24 chr1 19702355 19702482 -222961871 - MIR SINE MIR -21 241 108 1840 121 26 0 chr1 19702531 19702796 -222961557 + AluSx SINE Alu 1 272 -40 183 42 0 0 chr1 19702808 19702832 -222961521 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1746 236 87 45 chr1 19703133 19703799 -222960554 + L1ME3 LINE L1 5448 6141 -21 429 279 49 8 chr1 19704150 19704272 -222960081 + MIR3 SINE MIR 15 141 -67 214 273 0 18 chr1 19704480 19704535 -222959818 + MIR SINE MIR 208 261 -1 622 278 51 17 chr1 19704539 19704715 -222959638 - MIR SINE MIR -21 241 60 352 247 31 80 chr1 19705451 19705550 -222958803 - MIR SINE MIR -1 261 159 1973 144 7 23 chr1 19705550 19705856 -222958497 - AluJo SINE Alu -11 301 1 1524 157 68 25 chr1 19705861 19706141 -222958212 - AluSx SINE Alu -20 292 1 352 247 31 80 chr1 19706141 19706197 -222958156 - MIR SINE MIR -107 155 108 1144 189 183 6 chr1 19706236 19706548 -222957805 + L1MB8 LINE L1 5812 6178 0 311 241 54 62 chr1 19706635 19706747 -222957606 - L2 LINE L2 0 3313 3203 277 190 47 36 chr1 19707041 19707145 -222957208 - MIR SINE MIR -60 202 97 316 372 29 7 chr1 19707489 19707626 -222956727 + MIR3 SINE MIR 30 169 -39 393 194 130 74 chr1 19707675 19707783 -222956570 - MER81 DNA DNA 0 114 1 1416 201 87 22 chr1 19708283 19708655 -222955698 - Charlie4a DNA MER1_type -1459 502 95 2066 107 0 14 chr1 19708655 19708971 -222955382 + AluSp SINE Alu 1 313 0 1416 201 87 22 chr1 19708971 19709046 -222955307 - Charlie4a DNA MER1_type -1866 95 26 232 145 129 81 chr1 19709679 19709741 -222954612 + MIR SINE MIR 88 152 -110 234 0 0 0 chr1 19709841 19709867 -222954486 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr1 19710727 19710754 -222953599 + GC_rich Low_complexity Low_complexity 1 27 0 26 74 0 0 chr1 19711013 19711067 -222953286 + GC_rich Low_complexity Low_complexity 1 54 0 237 128 0 0 chr1 19711189 19711236 -222953117 + (CGG)n Simple_repeat Simple_repeat 2 48 0 554 266 54 49 chr1 19712046 19712249 -222952104 - MIR SINE MIR -42 220 17 196 261 207 0 chr1 19713042 19713153 -222951200 + MIR SINE MIR 50 183 -79 225 235 0 59 chr1 19713829 19713897 -222950456 + MIR3 SINE MIR 96 159 -49 238 255 0 0 chr1 19714162 19714213 -222950140 + MIR3 SINE MIR 151 201 -7 1397 235 37 10 chr1 19714580 19714988 -222949365 - L1MB8 LINE L1 -2 6176 5758 514 267 20 7 chr1 19715357 19715507 -222948846 + MIR3 SINE MIR 16 167 -41 225 0 0 0 chr1 19716144 19716169 -222948184 + (C)n Simple_repeat Simple_repeat 1 25 0 214 318 76 0 chr1 19716794 19716860 -222947493 - MIR3 SINE MIR -29 179 109 364 223 61 95 chr1 19717355 19717503 -222946850 + MIR SINE MIR 50 192 -70 219 239 0 0 chr1 19718105 19718172 -222946181 + (CA)n Simple_repeat Simple_repeat 1 67 0 272 309 87 53 chr1 19718497 19718704 -222945649 + L2 LINE L2 3046 3259 -13 364 184 40 0 chr1 19718916 19718992 -222945361 + MIR SINE MIR 74 152 -110 244 341 15 68 chr1 19719598 19719730 -222944623 + MIR SINE MIR 88 212 -50 373 252 134 35 chr1 19719772 19719972 -222944381 - MIR SINE MIR -12 250 33 230 309 20 81 chr1 19720355 19720504 -222943849 + MIR3 SINE MIR 4 143 -65 213 239 28 42 chr1 19720944 19721015 -222943338 + L2 LINE L2 3244 3313 0 632 251 35 66 chr1 19721022 19721208 -222943145 - MIR SINE MIR -10 252 73 2234 97 0 13 chr1 19721208 19721519 -222942834 + AluSg SINE Alu 1 307 -3 632 251 35 66 chr1 19721519 19721559 -222942794 - MIR SINE MIR -189 73 33 356 307 44 9 chr1 19721604 19721718 -222942635 + MIR SINE MIR 95 212 -50 339 262 35 5 chr1 19721957 19722073 -222942280 + MIR SINE MIR 33 153 -68 457 328 82 11 chr1 19722692 19722875 -222941478 - L2 LINE L2 -151 3121 2926 246 343 0 9 chr1 19722974 19723079 -222941274 + CT-rich Low_complexity Low_complexity 4 107 0 372 257 129 0 chr1 19723779 19723880 -222940473 - MIR SINE MIR -65 143 30 1579 168 0 43 chr1 19724537 19724840 -222939513 - AluJo SINE Alu -22 290 1 1256 115 0 0 chr1 19724916 19725098 -222939255 + AluSg/x SINE Alu 131 312 0 361 220 199 28 chr1 19725320 19725461 -222938892 + MIR SINE MIR 47 211 -51 263 391 19 26 chr1 19726088 19726244 -222938109 - MIR3 SINE MIR -37 171 17 424 312 58 24 chr1 19726711 19726916 -222937437 - MIR SINE MIR -20 242 31 600 146 0 0 chr1 19727291 19727394 -222936959 + (TCCA)n Simple_repeat Simple_repeat 2 104 0 426 268 134 38 chr1 19727498 19727655 -222936698 - MIR3 SINE MIR -21 187 16 287 328 181 29 chr1 19727952 19728190 -222936163 - L3b LINE CR1 -27 1556 1283 393 240 72 56 chr1 19728404 19728529 -222935824 - MIR3 SINE MIR -21 187 61 271 241 12 36 chr1 19729268 19729351 -222935002 - MIR SINE MIR -87 121 41 215 292 62 0 chr1 19729383 19729448 -222934905 - L2 LINE L2 -2 3311 3243 556 246 42 30 chr1 19729646 19729813 -222934540 - MIR SINE MIR -64 198 30 339 231 0 0 chr1 19730202 19730267 -222934086 + MIR SINE MIR 83 147 -61 259 284 0 6 chr1 19730834 19730907 -222933446 + MIR SINE MIR 69 140 -68 306 224 229 23 chr1 19730999 19731155 -222933198 - MIR3 SINE MIR -59 149 7 351 331 53 103 chr1 19731813 19731918 -222932435 - L2 LINE L2 -5 3267 3158 1803 134 26 54 chr1 19731918 19732231 -222932122 + AluJo SINE Alu 1 304 -8 351 331 53 103 chr1 19732231 19732503 -222931850 - L2 LINE L2 -114 3158 2909 472 316 53 18 chr1 19733111 19733339 -222931014 + L1ME4a LINE L1 5849 6084 -37 1710 128 40 75 chr1 19733453 19733553 -222930800 + L1MB3 LINE L1 5799 5901 -282 2063 123 6 22 chr1 19733553 19733870 -222930483 + AluJb SINE Alu 1 312 0 1710 128 40 75 chr1 19733870 19734144 -222930209 + L1MB3 LINE L1 5901 6160 -23 1928 105 59 0 chr1 19734146 19734432 -222929921 - AluJb SINE Alu -9 303 1 192 246 169 15 chr1 19734817 19734882 -222929471 + L2 LINE L2 3188 3262 -10 206 359 26 0 chr1 19734981 19735059 -222929294 - L2 LINE L2 -7 3265 3186 661 288 79 5 chr1 19735260 19735479 -222928874 - MIR SINE MIR 0 262 29 191 326 62 54 chr1 19735747 19735876 -222928477 - MIR SINE MIR -123 139 10 204 319 255 21 chr1 19736173 19736314 -222928039 + MIR SINE MIR 86 259 -3 205 247 41 41 chr1 19736403 19736476 -222927877 - L2 LINE L2 -173 3099 3027 1936 154 0 3 chr1 19736737 19737036 -222927317 - AluJo SINE Alu -14 298 1 198 342 44 26 chr1 19737531 19737645 -222926708 + MIR SINE MIR 6 121 -141 553 290 129 13 chr1 19737685 19737909 -222926444 - MIR SINE MIR -11 251 2 458 292 22 0 chr1 19738026 19738163 -222926190 - MIR3 SINE MIR -26 182 43 301 326 42 0 chr1 19738636 19738731 -222925622 - MIR SINE MIR -47 215 117 215 245 0 0 chr1 19738844 19738893 -222925460 + L2 LINE L2 3224 3272 0 512 291 0 8 chr1 19739130 19739257 -222925096 - MIR SINE MIR -64 144 19 554 250 70 17 chr1 19741717 19741889 -222922464 + MIR SINE MIR 64 244 -18 640 199 6 6 chr1 19741910 19742081 -222922272 + (CACCAT)n Simple_repeat Simple_repeat 1 171 0 * 689 212 6 0 chr1 19742048 19742227 -222922126 + (CAT)n Simple_repeat Simple_repeat 1 180 0 215 308 0 0 chr1 19742349 19742401 -222921952 + L2 LINE L2 3213 3264 -8 542 244 100 14 chr1 19743177 19743375 -222920978 - MIR SINE MIR -36 226 15 425 221 58 0 chr1 19743482 19743586 -222920767 + LTR67 LTR ERVL 113 222 -335 195 320 112 0 chr1 19744206 19744308 -222920045 + MIR SINE MIR 96 219 -43 675 226 27 38 chr1 19744344 19744366 -222919987 - MIR SINE MIR -71 191 170 2222 99 0 7 chr1 19744366 19744684 -222919669 - AluSx SINE Alu 0 312 1 675 226 27 38 chr1 19744684 19744847 -222919506 - MIR SINE MIR -92 170 8 502 217 196 0 chr1 19744983 19745126 -222919227 - MER58C DNA MER1_type 0 215 45 305 265 118 0 chr1 19745354 19745456 -222918897 + MIR SINE MIR 117 230 -32 220 215 139 13 chr1 19745566 19745645 -222918708 + MIR3 SINE MIR 87 175 -33 319 278 167 16 chr1 19746159 19746316 -222918037 - MIR SINE MIR -67 141 3 432 264 50 0 chr1 19746384 19746505 -222917848 - L3 LINE CR1 -107 1470 1344 355 245 9 28 chr1 19747142 19747248 -222917105 + MER53 DNA DNA 1 104 -85 216 266 101 13 chr1 19747477 19747556 -222916797 + MIR SINE MIR 89 174 -88 450 276 17 0 chr1 19748268 19748384 -222915969 + MIR SINE MIR 40 157 -105 2121 135 0 3 chr1 19749895 19750206 -222914147 - AluSx SINE Alu -2 310 1 218 108 27 0 chr1 19750324 19750361 -222913992 - MIR SINE MIR -145 117 80 410 329 82 6 chr1 19750667 19750837 -222913516 + MIR SINE MIR 28 210 -52 372 307 234 13 chr1 19751463 19751860 -222912493 - L2 LINE L2 -2 3311 2827 276 294 78 10 chr1 19752370 19752472 -222911881 + L2 LINE L2 3204 3312 -1 205 398 29 10 chr1 19752521 19752624 -222911729 + MIR SINE MIR 86 190 -72 212 314 117 7 chr1 19753940 19754077 -222910276 - MIR SINE MIR -65 197 46 506 291 62 11 chr1 19757040 19757219 -222907134 + MIR SINE MIR 67 254 -8 2225 98 3 0 chr1 19758117 19758403 -222905950 + AluSq SINE Alu 1 287 -26 285 51 0 0 chr1 19758403 19758442 -222905911 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 370 239 18 62 chr1 19762584 19762697 -222901656 - MIR3 SINE MIR -86 122 15 668 251 59 14 chr1 19762898 19763110 -222901243 - MIR SINE MIR -28 234 19 1613 147 82 25 chr1 19764205 19764484 -222899869 - AluJo SINE Alu -17 295 1 186 43 0 0 chr1 19765764 19765787 -222898566 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 339 226 118 11 chr1 19765812 19765905 -222898448 + MIR SINE MIR 58 160 -102 2345 98 0 0 chr1 19765905 19766200 -222898153 + AluSq SINE Alu 1 295 -18 186 43 0 0 chr1 19767003 19767026 -222897327 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 264 206 196 22 chr1 19768075 19768167 -222896186 + MIR SINE MIR 2 109 -153 482 213 57 8 chr1 19769051 19769173 -222895180 + MIR SINE MIR 66 193 -69 273 242 242 16 chr1 19769819 19769947 -222894406 + MIR SINE MIR 63 219 -43 203 184 0 0 chr1 19770645 19770683 -222893670 - L2 LINE L2 -86 3227 3190 361 348 133 11 chr1 19770709 19771062 -222893291 + L2 LINE L2 2339 2734 -580 190 314 59 39 chr1 19771107 19771209 -222893144 + L2 LINE L2 2856 2959 -313 2321 105 0 3 chr1 19771478 19771782 -222892571 + AluSq SINE Alu 1 303 -10 1944 163 42 15 chr1 19772132 19773007 -222891346 + L1MD1 LINE L1 5274 6242 0 198 313 136 20 chr1 19774192 19774339 -222890014 + L2 LINE L2 2705 2868 -446 356 259 63 81 chr1 19775163 19775337 -222889016 + MIR3 SINE MIR 33 203 -5 220 227 0 0 chr1 19775797 19775841 -222888512 + (TATG)n Simple_repeat Simple_repeat 4 47 0 249 220 0 20 chr1 19778215 19778265 -222886088 - L2 LINE L2 -8 3305 3257 204 263 195 51 chr1 19778674 19778792 -222885561 - MIR SINE MIR -105 157 23 308 250 36 36 chr1 19779576 19779688 -222884665 + GA-rich Low_complexity Low_complexity 4 115 0 356 246 141 75 chr1 19780793 19780992 -222883361 - MIR SINE MIR -4 258 47 309 288 192 0 chr1 19782524 19782649 -222881704 + L2 LINE L2 3107 3255 -17 1352 181 26 0 chr1 19782813 19783039 -222881314 + AluJb SINE Alu 65 296 -16 650 322 97 11 chr1 19783560 19783920 -222880433 + L1MEd LINE L1 443 833 -5286 2273 87 3 3 chr1 19783963 19784251 -222880102 + AluSp SINE Alu 16 303 -10 270 256 67 0 chr1 19784412 19784502 -222879851 + L1MEd LINE L1 1012 1107 -5024 211 184 0 0 chr1 19786212 19786250 -222878103 + (CCA)n Simple_repeat Simple_repeat 1 38 0 2500 200 93 12 chr1 19788039 19788164 -222876189 - Charlie1a DNA MER1_type -1306 1455 1342 1944 162 0 13 chr1 19788164 19788472 -222875881 + AluJb SINE Alu 1 304 -8 2500 200 93 12 chr1 19788472 19788990 -222875363 - Charlie1a DNA MER1_type -1419 1342 760 1766 237 133 6 chr1 19788961 19789493 -222874860 - Charlie1a DNA MER1_type -855 600 1 * 221 351 22 52 chr1 19790004 19790138 -222874215 - L2 LINE L2 0 3272 3143 759 279 104 0 chr1 19790206 19790428 -222873925 - MIR SINE MIR -4 258 14 205 354 24 0 chr1 19790436 19790518 -222873835 - L2 LINE L2 -324 2948 2865 496 230 55 25 chr1 19791961 19792161 -222872192 + L2 LINE L2 2750 2955 -359 1076 176 25 25 chr1 19792218 19792281 -222872072 - AluSx SINE Alu -113 199 137 2367 99 10 0 chr1 19792281 19792585 -222871768 - AluSp SINE Alu -6 307 1 1076 176 25 25 chr1 19792585 19792720 -222871633 - AluSx SINE Alu -174 138 1 355 308 63 14 chr1 19792720 19792863 -222871490 - MIR SINE MIR -111 151 2 601 253 167 0 chr1 19793617 19793791 -222870562 - MIR SINE MIR -50 212 10 320 270 82 99 chr1 19794811 19795056 -222869297 - MIR SINE MIR -12 250 11 225 108 0 0 chr1 19795859 19795896 -222868457 + (CA)n Simple_repeat Simple_repeat 1 37 0 878 226 116 0 chr1 19796786 19796985 -222867368 - MIR SINE MIR 0 262 41 878 150 0 29 chr1 19798187 19798327 -222866026 - AluJb SINE Alu -176 136 1 357 179 179 0 chr1 19798849 19798927 -222865426 + L1MB8 LINE L1 6081 6172 -6 1502 114 0 23 chr1 19799084 19799304 -222865049 - AluJo SINE Alu -11 301 87 193 312 57 50 chr1 19799342 19799483 -222864870 - L2 LINE L2 -8 3305 3164 239 175 0 0 chr1 19801213 19801253 -222863100 + tRNA-Gly-GGA tRNA tRNA 2 41 -34 425 231 157 8 chr1 19802447 19802568 -222861785 + L2 LINE L2 3175 3313 0 2244 112 3 3 chr1 19803835 19804138 -222860215 + AluSx SINE Alu 1 303 -9 668 168 140 11 chr1 19804503 19804682 -222859671 + LTR50 LTR ERVL 8 209 -586 282 233 14 0 chr1 19804796 19804869 -222859484 + LTR50 LTR ERVL 611 684 -111 611 323 19 49 chr1 19806497 19806760 -222857593 - MIR SINE MIR -1 261 7 297 312 36 29 chr1 19808616 19808754 -222855599 + L2 LINE L2 3175 3313 0 356 292 69 46 chr1 19809365 19809495 -222854858 + MIR SINE MIR 16 148 -60 776 225 14 0 chr1 19810726 19810868 -222853485 + AluJo SINE Alu 126 269 -43 1309 167 171 0 chr1 19810941 19811187 -222853166 + AluJo SINE Alu 1 288 -24 1871 164 7 0 chr1 19811576 19811874 -222852479 - AluJo SINE Alu -12 300 1 237 33 0 0 chr1 19811909 19811939 -222852414 + (A)n Simple_repeat Simple_repeat 1 30 0 1156 277 92 70 chr1 19812224 19812259 -222852094 + L1 LINE L1 2746 2779 -3367 2258 113 3 0 chr1 19812259 19812561 -222851792 + AluSp SINE Alu 3 305 -8 1156 277 92 70 chr1 19812561 19812843 -222851510 + L1 LINE L1 2779 3053 -3093 2171 135 0 0 chr1 19812843 19813147 -222851206 - AluSx SINE Alu -8 304 1 1156 277 92 70 chr1 19813147 19814332 -222850021 + L1 LINE L1 3053 4282 -1864 1414 159 78 30 chr1 19814333 19814462 -222849891 + AluJo SINE Alu 1 122 -191 2164 135 0 22 chr1 19814462 19814780 -222849573 + AluSx SINE Alu 1 311 -1 1414 159 78 30 chr1 19814780 19814950 -222849403 + AluJo SINE Alu 122 313 0 768 184 127 0 chr1 19814952 19815110 -222849243 + FRAM SINE Alu 1 176 0 1595 263 105 10 chr1 19815606 19816306 -222848047 - L1 LINE L1 -996 5150 4381 833 312 71 20 chr1 19816387 19816949 -222847404 + L1MEc LINE L1 1270 1811 -851 432 320 43 49 chr1 19817028 19817378 -222846975 + L1MEc LINE L1 1963 2310 -4086 1944 138 7 3 chr1 19817682 19817980 -222846373 + AluJb SINE Alu 1 299 -13 180 125 0 0 chr1 19818690 19818722 -222845631 + (TTCTCC)n Simple_repeat Simple_repeat 4 35 0 269 26 26 0 chr1 19819919 19819957 -222844396 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 967 178 128 6 chr1 19823244 19823507 -222840846 + MER33 DNA MER1_type 1 287 -37 1573 104 148 8 chr1 19823507 19823757 -222840596 + AluSg1 SINE Alu 1 285 -24 242 116 23 0 chr1 19823760 19823803 -222840550 + GA-rich Low_complexity Low_complexity 1 44 0 993 122 6 17 chr1 19823806 19823987 -222840366 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 258 305 12 0 chr1 19825194 19825276 -222839077 - L2 LINE L2 -21 3251 3169 315 0 0 0 chr1 19826174 19826209 -222838144 + (CA)n Simple_repeat Simple_repeat 2 36 0 309 250 75 33 chr1 19830468 19830588 -222833765 + L1M4 LINE L1 1443 1567 -4975 867 200 18 30 chr1 19836684 19836849 -222827504 - AluJo SINE Alu -24 288 126 1296 138 0 74 chr1 19839118 19839349 -222825004 - AluJb SINE Alu -19 293 80 600 118 17 84 chr1 19839449 19839568 -222824785 - AluJb SINE Alu -200 112 2 1850 165 0 14 chr1 19839666 19839963 -222824390 + AluSx SINE Alu 1 293 -19 208 305 17 0 chr1 19840078 19840137 -222824216 + L3 LINE CR1 1056 1115 -462 1617 148 21 32 chr1 19840410 19840693 -222823660 - AluJb SINE Alu -13 299 20 944 206 31 0 chr1 19841288 19841482 -222822871 + MER105 DNA DNA 1 200 -4 196 256 0 0 chr1 19842190 19842233 -222822120 + MIR3 SINE MIR 152 194 -14 1648 127 35 92 chr1 19846627 19846942 -222817411 + AluJb SINE Alu 1 297 -15 2503 60 0 3 chr1 19848727 19849027 -222815326 + AluY SINE Alu 1 299 -12 223 294 262 0 chr1 19849130 19849256 -222815097 - MIR SINE MIR -10 252 94 1072 194 0 5 chr1 19850230 19850426 -222813927 + AluJo SINE Alu 84 278 -34 225 196 22 0 chr1 19850428 19850474 -222813879 + GA-rich Low_complexity Low_complexity 5 51 0 414 277 144 20 chr1 19850503 19850698 -222813655 + MIR SINE MIR 31 249 -13 248 221 61 117 chr1 19851135 19851298 -222813055 - MER103 DNA DNA -11 155 2 470 229 46 18 chr1 19851339 19851448 -222812905 + L2 LINE L2 3190 3301 -12 2013 121 14 27 chr1 19851590 19851887 -222812466 + AluSx SINE Alu 1 293 -19 578 232 89 12 chr1 19851973 19852141 -222812212 - Charlie8 DNA MER1_type -2192 225 45 2278 107 0 0 chr1 19852266 19852557 -222811796 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr1 19852557 19852580 -222811773 + AT_rich Low_complexity Low_complexity 1 23 0 1139 175 57 24 chr1 19855155 19855366 -222808987 - MER20 DNA MER1_type -1 218 1 1754 158 36 16 chr1 19855813 19856117 -222808236 - AluJb SINE Alu -2 310 1 2078 119 3 20 chr1 19856121 19856424 -222807929 - AluSx SINE Alu -14 298 1 21 0 0 0 chr1 19856426 19856447 -222807906 + AT_rich Low_complexity Low_complexity 1 21 0 435 155 42 0 chr1 19857964 19858035 -222806318 + AluJ/FLAM SINE Alu 1 74 -238 21 0 0 0 chr1 19859957 19859978 -222804375 + AT_rich Low_complexity Low_complexity 1 21 0 1791 124 0 0 chr1 19860211 19860470 -222803883 - AluSx SINE Alu -5 307 49 644 164 27 0 chr1 19861128 19861238 -222803115 + FLAM_A SINE Alu 1 113 -29 195 114 0 0 chr1 19861246 19861281 -222803072 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 473 222 71 16 chr1 19861284 19861410 -222802943 + FLAM_A SINE Alu 1 133 0 205 370 76 13 chr1 19861421 19861645 -222802708 + L2 LINE L2 2365 2602 -712 * 416 211 0 0 chr1 19861639 19861710 -222802643 + L2 LINE L2 3242 3312 -1 3202 138 42 11 chr1 19861812 19862385 -222801968 - L1MB3 LINE L1 0 6183 5593 992 129 7 7 chr1 19862389 19862536 -222801817 - FAM SINE Alu -29 156 10 998 153 46 25 chr1 19862536 19862732 -222801621 - L1MB3 LINE L1 -564 5619 5420 414 278 13 85 chr1 19862733 19862907 -222801446 + L1ME1 LINE L1 5786 5949 -213 183 156 0 0 chr1 19862932 19862964 -222801389 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 338 223 45 27 chr1 19863153 19863265 -222801088 - L1P5 LINE L1 -725 5431 5318 2323 86 0 0 chr1 19863469 19863773 -222800580 + AluSx SINE Alu 1 304 -8 201 263 193 35 chr1 19864627 19864741 -222799612 + L2 LINE L2 3173 3304 -9 * 440 293 32 43 chr1 19864739 19864927 -222799426 - MIR SINE MIR -6 256 71 278 269 0 0 chr1 19865414 19865493 -222798860 + L1ME1 LINE L1 6052 6289 -44 2046 92 30 16 chr1 19865591 19865895 -222798458 - AluSg SINE Alu -2 308 1 299 24 0 24 chr1 19867102 19867143 -222797210 + (TA)n Simple_repeat Simple_repeat 1 40 0 358 151 7 26 chr1 19867806 19868096 -222796257 + AluJo SINE Alu 1 334 0 1656 197 0 0 chr1 19868297 19868601 -222795752 + AluJb SINE Alu 1 304 -8 1678 175 6 19 chr1 19868711 19869026 -222795327 + AluJo SINE Alu 1 311 -1 682 302 101 34 chr1 19869035 19869512 -222794841 + L1ME LINE L1 5311 5819 -302 369 257 143 7 chr1 19869591 19869731 -222794622 + HAL1b LINE L1 1187 1345 -3 363 326 84 74 chr1 19869858 19870030 -222794323 + L2 LINE L2 2953 3131 -141 1904 139 3 23 chr1 19870030 19870339 -222794014 + AluSx SINE Alu 1 303 -9 363 326 84 74 chr1 19870339 19870476 -222793877 + L2 LINE L2 3131 3265 -7 1469 273 142 36 chr1 19870479 19871213 -222793140 + L2 LINE L2 2247 3110 -203 2058 125 0 3 chr1 19871213 19871517 -222792836 + AluSx SINE Alu 1 303 -9 1469 273 142 36 chr1 19871517 19871723 -222792630 + L2 LINE L2 3110 3293 -20 274 291 39 47 chr1 19871924 19872051 -222792302 - MIR SINE MIR -59 203 78 263 261 101 43 chr1 19872690 19872813 -222791540 + L2 LINE L2 2965 3080 -233 2060 114 21 0 chr1 19872813 19873102 -222791251 - AluSq SINE Alu -18 295 1 263 261 101 43 chr1 19873102 19873232 -222791121 + L2 LINE L2 3080 3310 -3 1842 171 127 76 chr1 19873713 19874434 -222789919 + L1MC2 LINE L1 5594 6275 -58 851 220 5 27 chr1 19874445 19874631 -222789722 + AluJo SINE Alu 121 302 -10 2079 111 3 0 chr1 19874638 19874927 -222789426 + AluSq SINE Alu 1 290 -23 449 235 0 0 chr1 19874985 19875089 -222789264 + FLAM_A SINE Alu 36 139 0 2101 83 0 17 chr1 19875097 19875414 -222788939 + AluY SINE Alu 1 312 0 29 60 0 0 chr1 19875418 19875468 -222788885 + AT_rich Low_complexity Low_complexity 1 50 0 372 343 40 20 chr1 19875781 19875982 -222788371 + L2 LINE L2 2556 2760 -554 441 0 0 0 chr1 19876088 19876137 -222788216 + (CA)n Simple_repeat Simple_repeat 2 50 0 247 343 116 40 chr1 19876774 19877025 -222787328 + L2 LINE L2 3022 3291 -22 1779 157 7 0 chr1 19877465 19877758 -222786595 + AluJb SINE Alu 1 295 -17 629 325 142 13 chr1 19879168 19879470 -222784883 + MER102b DNA MER1_type 1 341 0 938 198 82 5 chr1 19879494 19879701 -222784652 + MER58A DNA MER1_type 1 223 -1 678 196 184 34 chr1 19880106 19880285 -222784068 - MIR SINE MIR -45 217 12 1330 93 88 19 chr1 19880288 19880503 -222783850 + MER30 DNA MER1_type 1 230 0 773 102 0 169 chr1 19880560 19880726 -222783627 + AluJb SINE Alu 2 139 -173 26 74 0 0 chr1 19880741 19880795 -222783558 + AT_rich Low_complexity Low_complexity 1 54 0 272 56 0 0 chr1 19880898 19880934 -222783419 + MER30B DNA MER1_type 43 78 -112 1667 135 29 11 chr1 19880990 19881264 -222783089 + AluJo SINE Alu 11 289 -23 429 233 82 121 chr1 19881947 19882077 -222782276 - MIR SINE MIR 0 262 141 1683 129 0 0 chr1 19882077 19882318 -222782035 + AluSx SINE Alu 49 289 -23 429 233 82 121 chr1 19882318 19882393 -222781960 - MIR SINE MIR -121 141 65 347 374 20 41 chr1 19882393 19882588 -222781765 + L1ME LINE L1 5371 5561 -560 2041 111 17 0 chr1 19882923 19883220 -222781133 + AluSg1 SINE Alu 1 302 -7 1973 115 3 0 chr1 19883347 19883633 -222780720 + AluSx SINE Alu 11 297 -15 2162 85 3 17 chr1 19884124 19884419 -222779934 - AluSg SINE Alu -19 291 1 31 0 0 0 chr1 19884638 19884669 -222779684 + AT_rich Low_complexity Low_complexity 1 31 0 773 164 0 75 chr1 19886296 19886455 -222777898 + FRAM SINE Alu 1 146 -30 2035 81 27 34 chr1 19886457 19886754 -222777599 - AluSq SINE Alu -18 295 1 2131 121 0 0 chr1 19887465 19887771 -222776582 + AluSx SINE Alu 1 306 -6 1359 182 149 0 chr1 19887823 19888119 -222776234 + MER58B DNA MER1_type 2 341 0 2285 99 0 0 chr1 19888304 19888608 -222775745 + AluY SINE Alu 1 304 -7 1615 139 36 7 chr1 19889611 19889892 -222774461 + MSTB-int LTR MaLR 1349 1637 -14 2399 154 24 14 chr1 19889910 19890332 -222774021 + MSTB LTR MaLR 1 426 0 304 323 0 10 chr1 19890855 19890954 -222773399 + MIR SINE MIR 39 136 -126 236 125 38 188 chr1 19891003 19891083 -222773270 - L2 LINE L2 -19 3294 3227 222 237 175 31 chr1 19891191 19891288 -222773065 + MIR SINE MIR 119 229 -33 1896 141 0 13 chr1 19891315 19891621 -222772732 + AluSx SINE Alu 1 302 -10 200 280 140 0 chr1 19893028 19893121 -222771232 - L2 LINE L2 0 3313 3208 230 178 67 0 chr1 19893201 19893246 -222771107 + L2 LINE L2 3221 3268 -4 1684 146 16 39 chr1 19894145 19894350 -222770003 + AluSx SINE Alu 1 198 -114 2463 66 0 0 chr1 19894350 19894655 -222769698 + AluY SINE Alu 1 305 -6 1684 146 16 39 chr1 19894655 19894758 -222769595 + AluSx SINE Alu 198 302 -10 2028 121 3 10 chr1 19895128 19895435 -222768918 - AluSg SINE Alu -5 305 1 292 300 0 12 chr1 19895761 19895841 -222768512 - MIR SINE MIR -182 80 2 575 272 118 64 chr1 19896561 19896584 -222767769 - MER102a DNA MER1_type -1087 330 310 1844 125 34 7 chr1 19896584 19896880 -222767473 + AluJb SINE Alu 1 304 -8 575 272 118 64 chr1 19896880 19897169 -222767184 - MER102a DNA MER1_type -1107 310 1 514 347 41 16 chr1 19900542 19900784 -222763569 - MIR SINE MIR -13 249 2 2332 92 0 0 chr1 19901399 19901703 -222762650 - AluSx SINE Alu -8 304 1 2225 87 3 10 chr1 19901713 19902011 -222762342 - AluSq SINE Alu -17 296 1 1848 91 80 0 chr1 19902012 19902287 -222762066 - AluSq SINE Alu -16 297 1 31 0 0 0 chr1 19902506 19902537 -222761816 + AT_rich Low_complexity Low_complexity 1 31 0 373 276 8 16 chr1 19905034 19905157 -222759196 + MIR SINE MIR 18 139 -69 1377 87 0 73 chr1 19906084 19906302 -222758051 - AluSp SINE Alu 0 313 112 710 156 8 23 chr1 19908649 19908777 -222755576 - FLAM_A SINE Alu -6 136 11 420 272 48 24 chr1 19909150 19909275 -222755078 + L2 LINE L2 3184 3311 -2 254 303 15 0 chr1 19909432 19909498 -222754855 + L2 LINE L2 3198 3264 -8 1706 176 4 0 chr1 19909558 19909825 -222754528 - AluJo SINE Alu -31 281 14 938 112 0 0 chr1 19912088 19912213 -222752140 - AluSq/x SINE Alu -188 125 1 1592 125 4 42 chr1 19912999 19913263 -222751090 + AluJo SINE Alu 57 310 -2 21 0 0 0 chr1 19913732 19913753 -222750600 + AT_rich Low_complexity Low_complexity 1 21 0 1072 149 7 0 chr1 19913816 19913970 -222750383 + AluJb SINE Alu 1 155 -157 270 320 196 19 chr1 19914383 19914746 -222749607 + L3 LINE CR1 1148 1574 -3 255 309 11 11 chr1 19917369 19917463 -222746890 - MIR SINE MIR -13 249 156 530 167 0 0 chr1 19917466 19917550 -222746803 - Tigger7 DNA MER2_type 0 2587 2504 2882 163 58 2 chr1 19917552 19918074 -222746279 - Tigger7 DNA MER2_type -182 551 1 610 286 7 7 chr1 19918074 19918214 -222746139 - MIR SINE MIR -108 154 15 566 282 154 14 chr1 19918359 19918579 -222745774 + MIR SINE MIR 12 262 0 294 24 24 0 chr1 19918974 19919016 -222745337 - AluY SINE Alu -259 43 1 2121 124 20 0 chr1 19919050 19919348 -222745005 + AluSx SINE Alu 5 308 -4 546 258 178 62 chr1 19919348 19919623 -222744730 - L2 LINE L2 -1004 2310 2004 22 35 0 0 chr1 19919786 19919815 -222744538 + AT_rich Low_complexity Low_complexity 1 29 0 1567 167 34 4 chr1 19919815 19920084 -222744269 + AluJo SINE Alu 1 277 -35 378 0 0 0 chr1 19920091 19920133 -222744220 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 779 202 0 0 chr1 19920137 19920266 -222744087 - AluJb SINE Alu -181 131 3 1401 304 153 48 chr1 19920356 19920593 -222743760 + L2 LINE L2 601 812 -2502 1590 183 63 14 chr1 19920593 19920877 -222743476 + AluJo SINE Alu 1 298 -14 1401 304 153 48 chr1 19920877 19921135 -222743218 + L2 LINE L2 812 1042 -2272 2088 149 3 0 chr1 19921135 19921444 -222742909 + AluSx SINE Alu 1 310 -2 1401 304 153 48 chr1 19921444 19922178 -222742175 + L2 LINE L2 1042 1960 -1354 192 324 44 0 chr1 19922220 19922288 -222742065 + L2 LINE L2 3238 3308 -5 418 277 130 43 chr1 19922525 19922618 -222741735 - MIR SINE MIR 0 262 178 1921 155 40 0 chr1 19922618 19922914 -222741439 - AluJb SINE Alu -4 308 1 418 277 130 43 chr1 19922914 19923051 -222741302 - MIR SINE MIR -84 178 12 196 323 46 0 chr1 19923100 19923165 -222741188 + L2 LINE L2 3238 3305 -8 2156 118 10 3 chr1 19923640 19923937 -222740416 + AluSx SINE Alu 1 299 -13 241 149 43 0 chr1 19924274 19924321 -222740032 - MER103 DNA DNA -11 155 107 708 278 129 72 chr1 19924328 19924632 -222739721 + L2 LINE L2 1584 1869 -1445 799 121 0 50 chr1 19924632 19924772 -222739581 - FLAM_C SINE Alu 0 133 1 708 278 129 72 chr1 19924772 19925065 -222739288 + L2 LINE L2 1869 2215 -1099 247 317 118 57 chr1 19925783 19926029 -222738324 + L2 LINE L2 2979 3239 -33 592 228 53 69 chr1 19926249 19926337 -222738016 + L1M4 LINE L1 4342 4430 -1716 2496 61 3 3 chr1 19926337 19926632 -222737721 - AluSp SINE Alu -18 295 1 592 228 53 69 chr1 19926632 19926846 -222737507 + L1M4 LINE L1 4430 4639 -1507 1888 149 24 14 chr1 19926846 19927135 -222737218 - AluJo SINE Alu -7 305 14 2590 58 3 10 chr1 19927948 19928261 -222736092 - AluY SINE Alu 0 311 1 280 247 37 0 chr1 19928586 19928667 -222735686 + Tigger7 DNA MER2_type 8 91 -614 * 1273 119 70 4 chr1 19928648 19928875 -222735478 + Tigger7 DNA MER2_type 2246 2487 0 240 329 0 14 chr1 19929085 19929155 -222735198 - MIR SINE MIR -181 81 13 206 315 27 0 chr1 19929176 19929249 -222735104 - MIR SINE MIR -89 119 45 1505 155 4 0 chr1 19929604 19929843 -222734510 - AluJb SINE Alu -9 303 64 396 0 0 0 chr1 19930058 19930102 -222734251 + (TG)n Simple_repeat Simple_repeat 2 45 0 543 193 76 23 chr1 19930373 19930544 -222733809 + MER113 DNA MER1_type? 38 217 -304 309 109 0 0 chr1 19931243 19931289 -222733064 + (CCCTG)n Simple_repeat Simple_repeat 4 49 0 323 235 111 20 chr1 19931547 19931700 -222732653 - L1ME4a LINE L1 0 6121 5955 1019 156 0 0 chr1 19931733 19931887 -222732466 - FRAM SINE Alu -12 154 1 1014 183 203 12 chr1 19932669 19932762 -222731591 + AluJo SINE Alu 2 76 -236 207 0 0 0 chr1 19932762 19932785 -222731568 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1014 183 203 12 chr1 19932785 19932942 -222731411 + AluJo SINE Alu 76 300 -12 491 182 29 193 chr1 19933776 19934056 -222730297 + MIR SINE MIR 28 261 -1 1342 218 65 0 chr1 19934347 19934640 -222729713 - MLT1A1 LTR MaLR 0 365 54 246 169 325 12 chr1 19935801 19935884 -222728469 - L2 LINE L2 -22 3291 3183 217 245 138 24 chr1 19936226 19936354 -222727999 - MIR3 SINE MIR -51 157 8 335 271 65 9 chr1 19936697 19936804 -222727549 + MIR SINE MIR 149 261 -1 360 286 9 18 chr1 19937167 19937279 -222727074 + L2 LINE L2 3193 3303 -10 396 323 130 10 chr1 19937306 19937498 -222726855 + MIR SINE MIR 21 235 -27 2135 139 0 7 chr1 19938537 19938840 -222725513 - AluSg SINE Alu -9 301 1 294 259 25 12 chr1 19938859 19938940 -222725413 - MIR SINE MIR -67 195 114 242 250 90 30 chr1 19939337 19939437 -222724916 + MIR SINE MIR 157 262 0 191 265 241 0 chr1 19939480 19939563 -222724790 - MIR SINE MIR -71 191 89 803 150 0 39 chr1 19939885 19940012 -222724341 + FLAM_A SINE Alu 2 123 -10 534 202 65 19 chr1 19940682 19940836 -222723517 - MIR SINE MIR -62 146 25 221 86 57 0 chr1 19940884 19940919 -222723434 - MIR SINE MIR -64 144 108 1256 185 3 96 chr1 19941352 19941541 -222722812 - AluJo SINE Alu -28 284 134 534 31 0 0 chr1 19941541 19941605 -222722748 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 1256 185 3 96 chr1 19941605 19941728 -222722625 - AluJo SINE Alu -178 134 1 450 111 25 37 chr1 19941966 19942047 -222722306 - MER116 DNA Mariner 0 80 1 558 241 126 6 chr1 19942433 19942607 -222721746 + MIR SINE MIR 14 208 -54 207 0 0 0 chr1 19943618 19943641 -222720712 + (T)n Simple_repeat Simple_repeat 1 23 0 215 190 38 63 chr1 19943898 19943977 -222720376 + L2 LINE L2 3232 3308 -5 430 299 62 52 chr1 19944144 19944355 -222719998 + MIR SINE MIR 2 214 -48 2144 142 0 0 chr1 19944620 19944923 -222719430 - AluSx SINE Alu -9 303 1 1843 128 4 8 chr1 19944926 19945192 -222719161 - AluSx SINE Alu -4 308 44 197 327 164 10 chr1 19945488 19945592 -222718761 + L2 LINE L2 2607 2726 -588 229 232 36 0 chr1 19945889 19945945 -222718408 + L2 LINE L2 3202 3259 -54 2364 101 0 3 chr1 19946112 19946419 -222717934 - AluSq SINE Alu -7 306 1 206 246 18 18 chr1 19948347 19948404 -222715949 + L3 LINE CR1 581 637 -940 190 317 0 33 chr1 19949342 19949402 -222714951 - MIR3 SINE MIR 0 208 151 550 163 10 0 chr1 19949928 19950026 -222714327 - L1MB7 LINE L1 -7 6177 6079 1889 131 4 4 chr1 19950027 19950295 -222714058 + AluSq SINE Alu 1 268 -45 537 214 87 70 chr1 19951691 19951920 -222712433 + MIR SINE MIR 30 262 0 383 148 222 0 chr1 19951941 19952022 -222712331 + MER6B DNA MER2_type 1 99 -177 2024 99 16 51 chr1 19952214 19952526 -222711827 - AluSx SINE Alu -11 301 1 235 191 0 44 chr1 19954822 19954890 -222709463 + (CCG)n Simple_repeat Simple_repeat 2 66 0 1390 160 45 45 chr1 19955914 19956202 -222708151 - AluJb SINE Alu -24 288 1 21 36 0 0 chr1 19956622 19956650 -222707703 + AT_rich Low_complexity Low_complexity 1 28 0 350 243 34 40 chr1 19957059 19957207 -222707146 + L1ME3 LINE L1 6015 6161 -1 653 138 26 17 chr1 19957796 19957939 -222706414 + L1MC4 LINE L1 7880 7988 -7 1518 74 5 0 chr1 19959466 19959655 -222704698 + AluSg/x SINE Alu 120 309 -3 2139 135 3 0 chr1 19959662 19959959 -222704394 + AluSx SINE Alu 1 298 -14 2012 132 13 32 chr1 19960322 19960632 -222703721 - AluSx SINE Alu -8 304 1 867 171 26 0 chr1 19960734 19960886 -222703467 + FRAM SINE Alu 1 156 -10 383 87 0 29 chr1 19961120 19961189 -222703164 + L1MA1 LINE L1 6235 6301 -1 2066 128 10 7 chr1 19961335 19961633 -222702720 - AluJo SINE Alu -13 299 1 1774 106 121 11 chr1 19961909 19962173 -222702180 + AluSg SINE Alu 1 293 -17 25 31 0 0 chr1 19963044 19963076 -222701277 + AT_rich Low_complexity Low_complexity 1 32 0 1214 226 42 36 chr1 19964898 19965329 -222699024 + L2 LINE L2 2804 3278 -35 2238 107 0 10 chr1 19965997 19966297 -222698056 + AluSc SINE Alu 1 297 -12 2041 90 23 0 chr1 19966433 19966689 -222697664 + AluSx SINE Alu 6 267 -45 663 131 16 31 chr1 19966821 19967065 -222697288 + AluJb SINE Alu 1 299 -13 508 255 55 12 chr1 19967710 19967922 -222696431 - MIR SINE MIR 0 262 2 290 358 140 0 chr1 19968365 19968544 -222695809 - MIR SINE MIR -12 250 47 2577 258 114 18 chr1 19968574 19969876 -222694477 + L2 LINE L2 1868 3302 -11 1902 161 13 17 chr1 19969878 19970015 -222694338 + AluJo SINE Alu 1 137 -175 2379 93 10 0 chr1 19970015 19970317 -222694036 + AluSc SINE Alu 3 307 -2 1902 161 13 17 chr1 19970317 19970477 -222693876 + AluJo SINE Alu 137 297 -15 517 225 138 0 chr1 19970497 19970657 -222693696 - MIR SINE MIR -21 241 60 687 213 0 0 chr1 19970979 19971120 -222693233 + FLAM_C SINE Alu 2 142 -1 23 0 0 0 chr1 19971176 19971199 -222693154 + AT_rich Low_complexity Low_complexity 1 23 0 1937 135 0 60 chr1 19971199 19971517 -222692836 - AluJb SINE Alu -13 299 1 922 196 45 17 chr1 19971524 19971703 -222692650 + AluJb SINE Alu 129 312 0 677 303 60 4 chr1 19971703 19971937 -222692416 - MIR SINE MIR -1 261 15 1756 124 116 4 chr1 19972228 19972503 -222691850 + AluSx SINE Alu 1 306 -6 2413 97 3 0 chr1 19972567 19972875 -222691478 + AluSp SINE Alu 1 309 -4 501 298 60 0 chr1 19973141 19973309 -222691044 + L1ME3A LINE L1 5991 6168 -2 2226 99 27 0 chr1 19973413 19973705 -222690648 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr1 19973921 19973956 -222690397 + AT_rich Low_complexity Low_complexity 1 35 0 631 230 173 5 chr1 19974397 19974588 -222689765 - MIR SINE MIR -22 240 18 2362 93 0 3 chr1 19974932 19975233 -222689120 + AluSg SINE Alu 1 300 -10 434 266 62 0 chr1 19975235 19975348 -222689005 + L2 LINE L2 3192 3311 -2 2039 131 3 13 chr1 19976268 19976566 -222687787 - AluJb SINE Alu -17 295 1 1990 95 0 0 chr1 19976623 19976866 -222687487 + AluSx SINE Alu 1 243 -69 541 330 73 5 chr1 19978385 19978603 -222685750 + MIR SINE MIR 16 248 -14 248 235 0 59 chr1 19978894 19978962 -222685391 + L2 LINE L2 3209 3272 0 2314 100 0 7 chr1 19979210 19979509 -222684844 + AluSg SINE Alu 3 299 -11 1892 143 14 18 chr1 19979929 19980064 -222684289 + AluJb SINE Alu 1 135 -173 2411 58 3 20 chr1 19980064 19980387 -222683966 + AluY SINE Alu 1 311 0 1892 143 14 18 chr1 19980387 19980560 -222683793 + AluJb SINE Alu 135 308 0 2027 93 68 7 chr1 19980737 19981017 -222683336 + AluSq SINE Alu 1 297 -16 2417 83 3 10 chr1 19981018 19981319 -222683034 + AluSq SINE Alu 1 299 -14 2521 88 0 0 chr1 19981329 19981635 -222682718 + AluSx SINE Alu 1 306 -6 496 347 41 16 chr1 19982250 19982492 -222681861 + MIR SINE MIR 2 249 -13 526 262 134 80 chr1 19985865 19986154 -222678199 + MER102a DNA MER1_type 1 310 -1107 2001 125 34 7 chr1 19986154 19986450 -222677903 - AluJb SINE Alu -8 304 1 526 262 134 80 chr1 19986450 19986473 -222677880 + MER102a DNA MER1_type 310 330 0 281 300 0 12 chr1 19987193 19987273 -222677080 + MIR SINE MIR 2 80 -182 2186 121 3 10 chr1 19987599 19987906 -222676447 + AluSg SINE Alu 1 305 -5 1521 158 29 0 chr1 19989064 19989305 -222675048 - AluJb SINE Alu -21 291 44 2375 81 3 14 chr1 19989799 19990096 -222674257 + AluSp SINE Alu 1 294 -19 2427 89 0 7 chr1 19990267 19990570 -222673783 - AluSq SINE Alu -12 301 1 597 86 97 0 chr1 19990657 19990750 -222673603 + AluJb SINE Alu 192 293 -19 2148 136 3 0 chr1 19990752 19991053 -222673300 + AluSx SINE Alu 1 302 -10 2081 147 10 0 chr1 19991146 19991453 -222672900 + AluSx SINE Alu 3 312 0 1521 212 89 8 chr1 19991477 19991836 -222672517 + MLT1B LTR MaLR 3 390 0 676 206 8 0 chr1 19991855 19991981 -222672372 - FLAM_A SINE Alu -6 127 1 6224 131 59 40 chr1 19992012 19992386 -222671967 + Tigger3b DNA MER2_type 1 366 -2662 2140 130 3 0 chr1 19992386 19992678 -222671675 + AluSx SINE Alu 1 293 -19 6224 131 59 40 chr1 19992678 19992836 -222671517 + Tigger3b DNA MER2_type 366 520 -2508 1912 151 6 41 chr1 19992836 19993058 -222671295 - AluJb SINE Alu -5 307 79 207 0 0 0 chr1 19993058 19993081 -222671272 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2314 82 4 0 chr1 19993082 19993361 -222670992 - AluSc SINE Alu -29 280 1 1912 151 6 41 chr1 19993361 19993454 -222670899 - AluJb SINE Alu -232 80 1 6224 131 59 40 chr1 19993454 19993555 -222670798 + Tigger3b DNA MER2_type 520 618 -2410 646 226 0 0 chr1 19993555 19993679 -222670674 + FLAM_A SINE Alu 1 124 -9 6224 131 59 40 chr1 19993679 19994251 -222670102 + Tigger3b DNA MER2_type 618 1231 0 1791 154 32 0 chr1 19994286 19994565 -222669788 + AluJb SINE Alu 1 288 -24 2569 70 6 6 chr1 19994579 19994891 -222669462 + AluSp SINE Alu 1 312 -1 207 0 0 0 chr1 19994984 19995007 -222669346 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 181 259 37 0 chr1 19995200 19995254 -222669099 - L2 LINE L2 -216 3056 3001 664 255 39 26 chr1 19995266 19995497 -222668856 - MIR SINE MIR 0 262 29 724 177 0 15 chr1 19995845 19995975 -222668378 + MER45A DNA AcHobo 51 178 0 1629 118 61 50 chr1 19996998 19997059 -222667294 - AluJo SINE Alu -29 283 224 2308 95 0 10 chr1 19997059 19997365 -222666988 + AluSx SINE Alu 1 303 -9 1629 118 61 50 chr1 19997365 19997583 -222666770 - AluJo SINE Alu -88 224 1 710 270 93 56 chr1 19997670 19998302 -222666051 - L2 LINE L2 -36 3236 2548 1519 180 3 77 chr1 19998734 19999057 -222665296 + AluJb SINE Alu 1 299 -13 335 333 17 23 chr1 19999668 19999845 -222664508 - MIR SINE MIR -1 261 86 246 183 0 38 chr1 19999856 20000064 -222664289 + AluJo SINE Alu 2 300 -2 2156 129 0 0 chr1 20000877 20001164 -222663189 + AluSx SINE Alu 1 287 -25 416 232 11 11 chr1 20001963 20002058 -222662295 - MER20 DNA MER1_type -124 95 1 191 261 130 0 chr1 20002705 20002774 -222661579 + MIR SINE MIR 92 169 -93 595 179 0 0 chr1 20002856 20002962 -222661391 + AluJb SINE Alu 120 225 -87 2147 127 0 10 chr1 20003624 20003924 -222660429 + AluY SINE Alu 1 297 -14 1180 165 26 10 chr1 20004006 20004200 -222660153 + AluJo SINE Alu 66 262 -50 945 127 0 0 chr1 20004581 20004707 -222659646 - AluJb SINE Alu -186 126 1 1468 186 10 70 chr1 20005868 20005966 -222658387 + AluJo SINE Alu 1 103 -209 2500 61 3 0 chr1 20005966 20006260 -222658093 + AluY SINE Alu 1 295 -16 1468 186 10 70 chr1 20006260 20006473 -222657880 + AluJo SINE Alu 103 293 -19 209 265 96 12 chr1 20006502 20006585 -222657768 + MIR SINE MIR 65 154 -108 1529 202 3 20 chr1 20007163 20007460 -222656893 + AluJb SINE Alu 1 292 -20 1146 191 38 9 chr1 20008215 20008425 -222655928 - AluJo SINE Alu -96 216 1 2431 68 0 3 chr1 20008793 20009086 -222655267 + AluSg1 SINE Alu 10 301 -8 2561 82 0 0 chr1 20009367 20009673 -222654680 - AluY SINE Alu -5 306 1 324 264 22 11 chr1 20010182 20010273 -222654080 + MLT1G1 LTR MaLR 166 257 -338 930 168 13 0 chr1 20010423 20010572 -222653781 - AluJb SINE Alu -161 151 1 2729 192 23 32 chr1 20010581 20010939 -222653414 - L1MB7 LINE L1 0 6184 5824 231 88 0 0 chr1 20010939 20010973 -222653380 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1564 179 4 11 chr1 20010973 20011246 -222653107 - AluJo SINE Alu -30 282 12 2729 192 23 32 chr1 20011246 20011549 -222652804 - L1MB7 LINE L1 -358 5826 5528 1242 135 36 9 chr1 20011553 20011775 -222652578 + MSTB LTR MaLR 199 426 0 289 323 0 10 chr1 20012300 20012399 -222651954 + MIR SINE MIR 39 136 -126 211 125 38 188 chr1 20012448 20012528 -222651825 - L2 LINE L2 -19 3294 3227 228 289 144 0 chr1 20012636 20012733 -222651620 + MIR SINE MIR 119 229 -33 2107 148 0 3 chr1 20012760 20013070 -222651283 + AluSx SINE Alu 1 309 -3 189 280 140 0 chr1 20014490 20014583 -222649770 - L2 LINE L2 0 3313 3208 216 178 67 0 chr1 20014663 20014708 -222649645 + L2 LINE L2 3221 3268 -4 1837 146 16 39 chr1 20015607 20015812 -222648541 + AluSx SINE Alu 1 198 -114 2622 66 0 0 chr1 20015812 20016117 -222648236 + AluY SINE Alu 1 305 -6 1837 146 16 39 chr1 20016117 20016220 -222648133 + AluSx SINE Alu 198 302 -10 910 144 7 39 chr1 20016280 20016433 -222647920 + AluSg/x SINE Alu 147 294 -18 1703 203 0 0 chr1 20016449 20016749 -222647604 + AluJb SINE Alu 6 305 -7 1853 131 28 21 chr1 20017068 20017359 -222646994 + AluJb SINE Alu 9 301 -11 184 250 16 62 chr1 20017551 20017615 -222646738 - MIR SINE MIR -3 259 199 274 235 0 15 chr1 20019225 20019293 -222645060 + L1MEc LINE L1 1551 1617 -4779 886 158 0 0 chr1 20019315 20019448 -222644905 + FLAM_C SINE Alu 9 141 -2 452 180 0 0 chr1 20019472 20019561 -222644792 + AluJ/FRAM SINE Alu 219 307 -5 1825 183 44 92 chr1 20019562 20019773 -222644580 + L1MEc LINE L1 2181 2400 -3815 2249 107 3 3 chr1 20019773 20020073 -222644280 + AluSp SINE Alu 2 301 -12 1825 183 44 92 chr1 20020073 20020178 -222644175 + L1MEc LINE L1 2400 2508 -3707 1685 186 13 17 chr1 20020178 20020479 -222643874 + AluJo SINE Alu 12 311 -1 1825 183 44 92 chr1 20020479 20020726 -222643627 + L1MEc LINE L1 2508 2765 -3450 2413 78 0 3 chr1 20020726 20021021 -222643332 + AluSg1 SINE Alu 3 296 -13 1825 183 44 92 chr1 20021021 20021163 -222643190 + L1MEc LINE L1 2765 2912 -3303 2161 148 0 0 chr1 20021163 20021467 -222642886 + AluSx SINE Alu 1 304 -8 2255 125 0 6 chr1 20021473 20021786 -222642567 + AluSx SINE Alu 1 311 -1 1825 183 44 92 chr1 20021786 20021862 -222642491 + L1MEc LINE L1 2821 2899 -3316 198 103 0 0 chr1 20021885 20021914 -222642439 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 820 209 84 21 chr1 20021926 20022165 -222642188 + L1MEc LINE L1 2878 3131 -3084 2147 127 3 0 chr1 20022167 20022459 -222641894 - AluSx SINE Alu -14 298 6 1270 206 36 12 chr1 20022466 20022801 -222641552 - L1M4 LINE L1 -843 5303 4961 407 167 0 56 chr1 20022801 20022891 -222641462 - AluJ/FLAM SINE Alu -226 86 2 2134 115 3 19 chr1 20022920 20023233 -222641120 + AluSc SINE Alu 1 308 -1 3880 201 35 28 chr1 20023240 20023594 -222640759 - L1MB7 LINE L1 -5 6179 5829 1545 180 13 27 chr1 20023594 20023894 -222640459 - AluJo SINE Alu -5 307 12 3880 201 35 28 chr1 20023894 20024457 -222639896 - L1MB7 LINE L1 -355 5829 5243 1614 87 18 13 chr1 20024457 20024686 -222639667 - MER30 DNA MER1_type 0 230 1 3880 201 35 28 chr1 20024686 20024882 -222639471 - L1MB7 LINE L1 -941 5243 5050 935 169 34 23 chr1 20024883 20025060 -222639293 - AluSg/x SINE Alu -12 298 120 940 205 61 51 chr1 20025060 20025198 -222639155 - L1MB7 LINE L1 -1102 5044 4909 2473 60 0 0 chr1 20025198 20025513 -222638840 - AluY SINE Alu 0 315 1 940 205 61 51 chr1 20025513 20025666 -222638687 - L1MB7 LINE L1 -1237 4909 4749 1228 113 0 36 chr1 20025669 20025863 -222638490 - AluSg/x SINE Alu 0 312 126 656 198 32 60 chr1 20025863 20025999 -222638354 - L1MB7 LINE L1 -1403 4743 4614 2001 138 10 6 chr1 20025999 20026310 -222638043 + AluSx SINE Alu 1 312 0 656 198 32 60 chr1 20026310 20026390 -222637963 - L1MB7 LINE L1 -1532 4614 4533 * 2178 143 32 5 chr1 20026389 20026768 -222637585 + MSTB-int LTR MaLR 1249 1637 -14 2300 152 24 14 chr1 20026786 20027208 -222637145 + MSTB LTR MaLR 1 426 0 289 323 0 10 chr1 20027731 20027830 -222636523 + MIR SINE MIR 39 136 -126 211 125 38 188 chr1 20027879 20027959 -222636394 - L2 LINE L2 -19 3294 3227 205 309 144 0 chr1 20028067 20028164 -222636189 + MIR SINE MIR 119 229 -33 2058 141 0 13 chr1 20028191 20028497 -222635856 + AluSx SINE Alu 1 302 -10 187 313 146 10 chr1 20029927 20030023 -222634330 - L2 LINE L2 0 3313 3205 216 178 67 0 chr1 20030099 20030144 -222634209 + L2 LINE L2 3221 3268 -4 1854 117 35 17 chr1 20031043 20031359 -222632994 + AluSg SINE Alu 1 310 0 1808 145 14 14 chr1 20031676 20031966 -222632387 + AluJb SINE Alu 9 298 -14 184 250 16 62 chr1 20032150 20032214 -222632139 - MIR SINE MIR -3 259 199 186 171 0 0 chr1 20032912 20032953 -222631400 + GA-rich Low_complexity Low_complexity 3 43 0 289 221 0 15 chr1 20033859 20033927 -222630426 + L1MEc LINE L1 1552 1618 -4778 825 158 0 8 chr1 20033943 20034076 -222630277 + FLAM_C SINE Alu 11 142 -1 423 195 0 0 chr1 20034090 20034177 -222630176 + AluJ/FRAM SINE Alu 219 305 -7 971 219 30 17 chr1 20034178 20034480 -222629873 + L1MEc LINE L1 2181 2486 -3910 1081 237 0 9 chr1 20034502 20034717 -222629636 + AluJo SINE Alu 13 225 -87 1369 208 52 48 chr1 20034744 20035136 -222629217 + L1MEc LINE L1 2433 2830 -3385 2096 134 0 0 chr1 20035136 20035448 -222628905 + AluSx SINE Alu 1 312 0 1369 208 52 48 chr1 20035448 20035516 -222628837 + L1MEc LINE L1 2830 2896 -3319 2418 108 0 6 chr1 20035518 20035852 -222628501 + AluSx SINE Alu 1 332 0 1098 201 60 36 chr1 20035920 20036161 -222628192 + L1MEc LINE L1 2878 3131 -3084 2156 137 3 0 chr1 20036161 20036467 -222627886 - AluSx SINE Alu -5 307 1 1098 201 60 36 chr1 20036467 20036558 -222627795 + L1MEc LINE L1 3131 3218 -2997 729 172 0 0 chr1 20036558 20036692 -222627661 + AluSg/x SINE Alu 179 312 0 1891 220 31 111 chr1 20036692 20037068 -222627285 + L1MEc LINE L1 3227 3631 -2584 2144 126 7 3 chr1 20037068 20037370 -222626983 + AluSx SINE Alu 1 303 -9 1799 163 24 17 chr1 20037376 20037671 -222626682 - AluJo SINE Alu -15 297 1 1891 220 31 111 chr1 20037671 20038216 -222626137 + L1MEc LINE L1 3636 4081 -2134 853 150 15 0 chr1 20038216 20038349 -222626004 + AluJo SINE Alu 1 135 -177 497 183 137 0 chr1 20038351 20038482 -222625871 + L1MEc LINE L1 4067 4215 -2000 1009 150 0 85 chr1 20038484 20038684 -222625669 - AluJb SINE Alu 0 312 130 1287 126 0 0 chr1 20038739 20038914 -222625439 + AluSg/x SINE Alu 134 308 -2 1159 100 5 37 chr1 20038915 20039105 -222625248 - HUERS-P3b LTR ERV1 -5135 2283 2100 * 4595 148 11 19 chr1 20039100 20040275 -222624078 - HUERS-P3b LTR ERV1 -4870 2126 506 952 211 54 5 chr1 20040284 20040488 -222623865 - HUERS-P3b LTR ERV1 -8705 214 1 233 193 18 18 chr1 20040488 20040545 -222623808 - LTR19C LTR ERV1 0 779 723 2507 172 39 79 chr1 20040546 20040862 -222623491 - LTR9 LTR ERV1 0 612 332 2412 109 0 0 chr1 20040862 20041175 -222623178 - AluSq SINE Alu 0 313 1 2507 172 39 79 chr1 20041175 20041479 -222622874 - LTR9 LTR ERV1 -280 332 17 2297 68 4 4 chr1 20041853 20042133 -222622220 - AluSg SINE Alu -12 298 19 1968 175 30 23 chr1 20042584 20043086 -222621267 + MLT2A2 LTR ERVL 1 507 -47 1957 132 14 7 chr1 20043089 20043391 -222620962 - AluSx SINE Alu 0 304 1 230 190 0 86 chr1 20043395 20043453 -222620900 + MLT2C1 LTR ERVL 338 390 -7 2456 67 0 3 chr1 20043797 20044122 -222620231 + AluY SINE Alu 1 324 0 2355 95 0 0 chr1 20044256 20044551 -222619802 - AluSg SINE Alu -15 295 1 303 162 10 50 chr1 20044558 20044657 -222619696 - L1MA8 LINE L1 0 6291 6197 482 271 181 10 chr1 20044895 20045188 -222619165 + MLT1G1 LTR MaLR 94 541 -54 3605 198 59 26 chr1 20045208 20045680 -222618673 - L1MB8 LINE L1 -37 6141 5686 2427 99 0 0 chr1 20045680 20045982 -222618371 - AluSx SINE Alu -10 302 1 3605 198 59 26 chr1 20045982 20046323 -222618030 - L1MB8 LINE L1 -492 5686 5358 2051 142 3 10 chr1 20046323 20046633 -222617720 - AluJb SINE Alu -2 310 3 3605 198 59 26 chr1 20046633 20047331 -222617022 - L1MB8 LINE L1 -820 5358 4569 1869 169 0 7 chr1 20047335 20047631 -222616722 - AluJb SINE Alu -13 299 6 743 201 0 0 chr1 20047795 20047939 -222616414 + AluJb SINE Alu 168 311 -1 1789 164 7 17 chr1 20049297 20049596 -222614757 + AluJo SINE Alu 1 296 -16 821 75 0 0 chr1 20049719 20049825 -222614528 - U6 snRNA snRNA 0 107 2 1559 210 7 10 chr1 20049969 20050274 -222614079 - AluJb SINE Alu 0 312 9 190 219 0 0 chr1 20050398 20050439 -222613914 + MIR SINE MIR 114 154 -108 1697 158 38 31 chr1 20051083 20051375 -222612978 - AluJb SINE Alu -18 294 1 477 285 27 12 chr1 20053290 20053463 -222610890 + MIR SINE MIR 20 205 -57 280 308 73 59 chr1 20053473 20053746 -222610607 - L2 LINE L2 -1 3271 2995 585 209 22 58 chr1 20054280 20054419 -222609934 + AluJo SINE Alu 3 136 -176 2411 103 0 3 chr1 20054436 20054747 -222609606 + AluSx SINE Alu 1 310 -2 1987 120 92 0 chr1 20055059 20055342 -222609011 + AluSx SINE Alu 1 309 -3 346 250 19 19 chr1 20057709 20057813 -222606540 - MIR SINE MIR -33 229 126 197 258 11 0 chr1 20057944 20058037 -222606316 + CT-rich Low_complexity Low_complexity 1 94 0 192 295 126 11 chr1 20058545 20058640 -222605713 + MER5A DNA MER1_type 7 112 -77 237 309 183 0 chr1 20059210 20059336 -222605017 - MIR SINE MIR -34 228 80 211 244 89 33 chr1 20059300 20059390 -222604963 + MIR SINE MIR 90 184 -78 * 184 29 29 29 chr1 20059539 20059573 -222604780 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2125 101 4 4 chr1 20059576 20059852 -222604501 - AluSx SINE Alu -36 276 1 300 91 0 0 chr1 20060352 20060396 -222603957 + (TC)n Simple_repeat Simple_repeat 1 44 0 291 313 159 0 chr1 20060448 20060630 -222603723 + MIR SINE MIR 4 214 -48 369 0 0 0 chr1 20060997 20061038 -222603315 + (TG)n Simple_repeat Simple_repeat 2 42 0 1492 144 39 27 chr1 20061038 20061295 -222603058 - AluJb SINE Alu -22 290 31 1045 182 0 0 chr1 20061310 20061491 -222602862 - AluJb SINE Alu -12 300 120 245 98 24 0 chr1 20061491 20061532 -222602821 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 758 129 0 58 chr1 20061555 20061694 -222602659 - FLAM_C SINE Alu -2 141 11 540 288 41 12 chr1 20061835 20062005 -222602348 - MIR SINE MIR -39 223 49 840 248 5 20 chr1 20062694 20062892 -222601461 - MIR SINE MIR -9 253 59 198 240 20 20 chr1 20062914 20062964 -222601389 - L2 LINE L2 -85 3187 3138 353 255 49 0 chr1 20063042 20063144 -222601209 + MIR SINE MIR 86 192 -70 940 103 0 22 chr1 20063309 20063445 -222600908 + FLAM_C SINE Alu 1 133 0 180 271 41 82 chr1 20063475 20063597 -222600756 - L2 LINE L2 -234 3038 2922 3533 167 25 32 chr1 20063765 20064249 -222600104 - L1MB7 LINE L1 -9 6175 5696 1966 134 0 16 chr1 20064249 20064265 -222600088 - AluJb SINE Alu -3 309 294 1926 128 0 3 chr1 20064265 20064547 -222599806 + AluSx SINE Alu 2 282 -30 1966 134 0 16 chr1 20064547 20064844 -222599509 - AluJb SINE Alu -18 294 1 3533 167 25 32 chr1 20064844 20065048 -222599305 - L1MB7 LINE L1 -488 5696 5492 2430 49 13 7 chr1 20065054 20065358 -222598995 - AluY SINE Alu -5 306 1 2144 119 0 0 chr1 20065362 20065656 -222598697 - AluSx SINE Alu -18 294 1 1174 205 76 6 chr1 20065656 20065806 -222598547 - L1MB7 LINE L1 -943 5203 5065 1683 188 6 19 chr1 20065806 20066120 -222598233 - AluJo SINE Alu -1 311 2 1174 205 76 6 chr1 20066120 20066211 -222598142 - L1MB7 LINE L1 -1081 5065 4982 2074 133 0 0 chr1 20066211 20066504 -222597849 - AluSx SINE Alu -13 299 7 1174 205 76 6 chr1 20066504 20066578 -222597775 - L1MB7 LINE L1 -1164 4982 4865 278 270 90 45 chr1 20066595 20066706 -222597647 - L2 LINE L2 -20 3293 3178 1798 158 13 28 chr1 20067505 20067822 -222596531 - AluJo SINE Alu 0 312 1 240 195 0 0 chr1 20067823 20067864 -222596489 - Alu SINE Alu -261 42 2 2154 128 0 3 chr1 20068039 20068351 -222596002 - AluSx SINE Alu -1 311 1 211 246 43 29 chr1 20068543 20068612 -222595741 + MIR SINE MIR 165 234 -28 397 237 31 0 chr1 20069563 20069660 -222594693 + MIR3 SINE MIR 85 184 -24 342 292 6 45 chr1 20069965 20070127 -222594226 - MIR SINE MIR -72 136 17 244 337 21 0 chr1 20070465 20070560 -222593793 - L2 LINE L2 -6 3266 3170 568 254 29 7 chr1 20070689 20070827 -222593526 - MIR SINE MIR -72 190 50 248 233 142 33 chr1 20071332 20071452 -222592901 + MIR3 SINE MIR 13 145 -63 309 149 0 0 chr1 20072133 20072200 -222592153 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 300 335 149 27 chr1 20072217 20072513 -222591840 - L2 LINE L2 -25 3288 2957 449 258 77 45 chr1 20072534 20072757 -222591596 + MIR SINE MIR 17 256 -6 2207 123 0 0 chr1 20073618 20073919 -222590434 + AluSx SINE Alu 1 301 -11 369 295 58 7 chr1 20074255 20074394 -222589959 + MIR SINE MIR 111 256 -6 21 0 0 0 chr1 20074629 20074650 -222589703 + AT_rich Low_complexity Low_complexity 1 21 0 805 136 8 0 chr1 20074650 20074775 -222589578 - FRAM SINE Alu -51 125 1 219 289 311 21 chr1 20075074 20075309 -222589044 - L2 LINE L2 -49 3223 2921 256 344 31 68 chr1 20075567 20075658 -222588695 - MIR SINE MIR -14 248 164 2294 81 7 0 chr1 20075658 20075953 -222588400 - AluSx SINE Alu -15 297 1 256 344 31 68 chr1 20075953 20076024 -222588329 - MIR SINE MIR -98 164 92 301 311 155 36 chr1 20076841 20077060 -222587293 + MIR SINE MIR 14 258 -4 966 125 0 0 chr1 20077131 20077267 -222587086 + AluJ SINE Alu 1 136 -176 1435 119 123 16 chr1 20077854 20078105 -222586248 - AluJb SINE Alu -13 299 22 813 169 30 2 chr1 20078313 20078583 -222585770 + AluJb SINE Alu 1 322 0 186 204 20 41 chr1 20078725 20078774 -222585579 + MIR SINE MIR 213 260 -2 212 234 325 0 chr1 20078799 20078876 -222585477 + L2 LINE L2 3171 3272 0 366 158 40 26 chr1 20078941 20079017 -222585336 + L1MB8 LINE L1 6102 6178 0 2006 131 10 0 chr1 20079188 20079485 -222584868 - AluSx SINE Alu -12 300 1 871 160 69 0 chr1 20079793 20079937 -222584416 + FRAM SINE Alu 2 155 -11 2243 116 0 0 chr1 20079937 20080247 -222584106 + AluSg SINE Alu 1 310 0 1931 141 0 10 chr1 20080720 20081017 -222583336 + AluSx SINE Alu 1 294 -18 889 137 8 0 chr1 20081035 20081166 -222583187 + FLAM_C SINE Alu 1 132 -1 524 305 74 27 chr1 20081310 20081608 -222582745 - L1MCb LINE L1 -5692 353 42 1863 146 100 10 chr1 20081618 20081754 -222582599 + MER31A LTR ERV1 1 123 -362 1766 157 42 0 chr1 20081754 20082040 -222582313 - AluJb SINE Alu -14 298 1 1863 146 100 10 chr1 20082040 20082314 -222582039 + MER31A LTR ERV1 123 448 -37 2103 84 35 0 chr1 20082641 20082925 -222581428 + AluSp SINE Alu 1 294 -19 189 272 25 49 chr1 20085112 20085193 -222579160 - MIR SINE MIR -41 221 143 916 107 0 0 chr1 20085193 20085314 -222579039 + FLAM_C SINE Alu 1 121 -22 240 114 0 44 chr1 20085359 20085404 -222578949 - MIR SINE MIR -63 145 107 195 231 29 106 chr1 20088200 20088304 -222576049 - MIR3 SINE MIR -110 98 3 361 264 21 15 chr1 20088874 20088991 -222575362 - MIR SINE MIR -72 136 21 234 268 59 9 chr1 20090410 20090520 -222573833 - MIR SINE MIR -79 129 12 316 335 55 82 chr1 20090848 20091141 -222573212 + L1ME LINE L1 748 1032 -5038 2222 97 0 52 chr1 20091454 20091784 -222572569 - AluSq SINE Alu 0 313 1 279 369 102 19 chr1 20091791 20091997 -222572356 + L3 LINE CR1 181 403 -1174 445 350 54 27 chr1 20092552 20092812 -222571541 + L3 LINE CR1 801 1067 -510 237 347 0 0 chr1 20092833 20092905 -222571448 + L3 LINE CR1 1021 1092 -485 485 197 172 25 chr1 20092905 20093027 -222571326 - FLAM_A SINE Alu -2 140 1 233 305 24 113 chr1 20093075 20093288 -222571065 + L3 LINE CR1 1153 1346 -231 1825 156 7 10 chr1 20095256 20095558 -222568795 - AluJb SINE Alu -10 302 2 2322 94 0 0 chr1 20095624 20095921 -222568432 - AluSg SINE Alu -10 300 4 1280 190 20 63 chr1 20095932 20096232 -222568121 - AluJo SINE Alu 0 312 26 278 325 32 16 chr1 20096259 20096382 -222567971 - MIR3 SINE MIR -83 125 1 255 243 189 61 chr1 20098220 20098368 -222565985 + L2 LINE L2 2579 2745 -569 374 255 41 0 chr1 20098746 20098844 -222565509 + MIR SINE MIR 48 149 -113 2403 80 0 3 chr1 20099855 20100156 -222564197 + AluSx SINE Alu 1 300 -12 375 226 212 14 chr1 20100722 20100868 -222563485 - MER5A DNA MER1_type -6 183 9 184 216 0 0 chr1 20101153 20101190 -222563163 + L3 LINE CR1 520 556 -1021 2088 109 0 20 chr1 20101505 20101808 -222562545 - AluSx SINE Alu -15 297 1 239 281 39 26 chr1 20102398 20102498 -222561855 + MIR SINE MIR 30 131 -77 2137 129 7 0 chr1 20102779 20103081 -222561272 - AluSx SINE Alu -8 304 1 237 221 15 134 chr1 20103747 20103927 -222560426 + L1MD3 LINE L1 7891 7995 0 432 290 152 38 chr1 20105565 20105841 -222558512 - L1ME4a LINE L1 -69 6052 5746 310 75 38 0 chr1 20106829 20106882 -222557471 - Alu SINE Alu -2 300 246 1773 128 57 4 chr1 20106882 20107163 -222557190 - AluSg SINE Alu -14 296 1 706 154 98 0 chr1 20107194 20107317 -222557036 + FLAM_C SINE Alu 3 137 -6 1307 143 0 63 chr1 20107727 20107964 -222556389 - AluJo SINE Alu -14 298 77 301 306 0 24 chr1 20108848 20108933 -222555420 + MIR3 SINE MIR 125 207 -1 825 318 157 36 chr1 20108976 20109478 -222554875 - L3 LINE CR1 -89 1488 879 2013 152 10 0 chr1 20109478 20109787 -222554566 - AluJo SINE Alu 0 312 1 825 318 157 36 chr1 20109787 20109972 -222554381 - L3 LINE CR1 -698 879 718 2477 84 0 10 chr1 20110192 20110504 -222553849 + AluSp SINE Alu 1 307 -6 868 126 8 8 chr1 20110808 20110927 -222553426 + FLAM_C SINE Alu 1 122 -180 246 32 0 0 chr1 20110927 20110958 -222553395 + (TA)n Simple_repeat Simple_repeat 1 31 0 2241 131 3 0 chr1 20111050 20111362 -222552991 + AluSq SINE Alu 1 313 0 362 291 50 7 chr1 20112731 20112872 -222551481 - MIR SINE MIR -114 148 2 788 94 0 107 chr1 20113005 20113154 -222551199 + FLAM_C SINE Alu 1 133 0 824 184 12 12 chr1 20113307 20113470 -222550883 - FRAM SINE Alu 0 166 4 1816 236 75 2 chr1 20114908 20115426 -222548927 - MER68 LTR ERV1 0 562 7 213 353 183 4 chr1 20115459 20115694 -222548659 + L2 LINE L2 3027 3303 -10 244 330 28 0 chr1 20116123 20116229 -222548124 - MIR SINE MIR -126 136 28 1483 158 18 49 chr1 20118318 20118603 -222545750 - AluJo SINE Alu 0 312 37 301 243 116 46 chr1 20120372 20120531 -222543822 + MIR SINE MIR 18 191 -65 332 384 41 0 chr1 20121331 20121477 -222542876 + L2 LINE L2 3162 3313 0 535 245 77 13 chr1 20121484 20121639 -222542714 + MIR SINE MIR 28 192 -70 400 306 46 20 chr1 20121958 20122131 -222542222 + MIR SINE MIR 34 211 -51 455 181 105 23 chr1 20122179 20122312 -222542041 + MER58C DNA MER1_type 67 210 -5 343 285 185 20 chr1 20122662 20122869 -222541484 + MIR SINE MIR 9 241 -21 490 313 52 13 chr1 20123465 20123695 -222540658 + MIR SINE MIR 21 259 -3 2350 119 0 0 chr1 20123731 20124043 -222540310 - AluSx SINE Alu 0 312 1 756 239 12 6 chr1 20125229 20125396 -222538957 + MER3 DNA MER1_type 5 125 -84 305 260 19 29 chr1 20125401 20125505 -222538848 + L2 LINE L2 3191 3293 -20 2320 103 0 3 chr1 20125532 20125834 -222538519 + AluSg SINE Alu 1 301 -9 345 200 31 0 chr1 20126229 20126294 -222538059 - AluJ/FRAM SINE Alu -15 287 221 1005 83 0 8 chr1 20126329 20126461 -222537892 - AluSg/x SINE Alu -4 308 178 907 192 65 16 chr1 20126726 20126971 -222537382 + L1M4 LINE L1 4674 4930 -1216 1397 164 0 94 chr1 20126973 20127150 -222537203 - AluJo SINE Alu -3 309 170 2058 134 3 7 chr1 20127150 20127448 -222536905 - AluJb SINE Alu -7 305 9 1397 164 0 94 chr1 20127448 20127569 -222536784 - AluJo SINE Alu -142 170 39 891 186 63 8 chr1 20127570 20127822 -222536531 + L1M4 LINE L1 4932 5197 -949 2092 143 3 0 chr1 20128493 20128793 -222535560 - AluJo SINE Alu -10 302 2 809 255 174 24 chr1 20128921 20129219 -222535134 + MLT1J2 LTR MaLR 97 439 -11 2262 72 44 17 chr1 20129305 20129598 -222534755 + AluY SINE Alu 1 301 -10 2078 137 0 7 chr1 20130243 20130254 -222534099 - AluSq SINE Alu -15 298 288 351 0 0 0 chr1 20130254 20130293 -222534060 + (TG)n Simple_repeat Simple_repeat 2 40 0 2078 137 0 7 chr1 20130293 20130581 -222533772 - AluSq SINE Alu -25 288 1 2059 149 0 3 chr1 20130581 20130883 -222533470 - AluSq SINE Alu -12 301 1 493 163 225 4 chr1 20130885 20131034 -222533319 + MSTA LTR MaLR 177 360 -68 918 191 12 0 chr1 20131037 20131199 -222533154 + LOR1-int LTR ERV1 5490 5653 -2467 434 107 0 27 chr1 20131201 20131276 -222533077 + LTR8A LTR ERV1 386 458 -269 264 283 92 64 chr1 20131435 20131608 -222532745 - L2 LINE L2 0 3313 3136 721 254 33 47 chr1 20132461 20132745 -222531608 + MLT1G1 LTR MaLR 5 264 -291 642 211 37 43 chr1 20132771 20132984 -222531369 + MLT1F1 LTR MaLR 395 567 0 262 211 0 67 chr1 20134216 20134236 -222530117 - L1MB4 LINE L1 -28 6152 6132 2180 107 6 49 chr1 20134236 20134562 -222529791 + AluSx SINE Alu 1 312 0 262 211 0 67 chr1 20134562 20134631 -222529722 - L1MB4 LINE L1 -48 6132 6069 721 133 210 56 chr1 20137291 20137486 -222526867 + MER46A DNA MER2_type 1 225 -11 2453 60 0 66 chr1 20137533 20137866 -222526487 + AluY SINE Alu 1 311 0 1573 148 130 4 chr1 20137918 20138188 -222526165 + AluJo SINE Alu 9 312 0 1833 181 3 13 chr1 20138276 20138579 -222525774 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 20138597 20138619 -222525734 + AT_rich Low_complexity Low_complexity 1 22 0 334 253 85 3 chr1 20138754 20138884 -222525469 - MIR SINE MIR -61 147 42 195 313 21 21 chr1 20141276 20141372 -222522981 + L2 LINE L2 3016 3111 -161 789 164 0 8 chr1 20141433 20141567 -222522786 + FLAM_C SINE Alu 1 133 0 2208 135 0 3 chr1 20141600 20141903 -222522450 + AluSx SINE Alu 1 302 -10 328 151 0 0 chr1 20141938 20141991 -222522362 + AluJ/FRAM SINE Alu 221 273 -29 809 268 153 6 chr1 20142061 20142401 -222521952 + L2 LINE L2 2181 2570 -744 273 306 87 50 chr1 20142893 20143040 -222521313 - MIR SINE MIR -65 143 16 297 232 152 0 chr1 20143238 20143337 -222521016 + L2 LINE L2 2992 3105 -167 207 290 87 0 chr1 20143643 20143712 -222520641 + L2 LINE L2 3183 3257 -56 218 260 0 0 chr1 20143764 20143814 -222520539 + GA-rich Low_complexity Low_complexity 4 53 0 332 311 92 19 chr1 20145491 20145697 -222518656 - MIR SINE MIR -22 240 20 397 267 16 96 chr1 20146115 20146302 -222518051 + MIR SINE MIR 59 230 -32 553 279 89 6 chr1 20146646 20146825 -222517528 + L2 LINE L2 3119 3312 -1 290 304 0 0 chr1 20147129 20147198 -222517155 + MIR SINE MIR 31 99 -109 374 235 102 0 chr1 20147761 20147859 -222516494 + MER53 DNA DNA 1 108 -81 2290 95 3 10 chr1 20147866 20148162 -222516191 - AluY SINE Alu -17 294 1 270 362 54 7 chr1 20149276 20149425 -222514928 - MIR SINE MIR -29 233 78 2095 144 7 7 chr1 20150337 20150643 -222513710 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr1 20150961 20150984 -222513369 + AT_rich Low_complexity Low_complexity 1 23 0 1433 173 0 21 chr1 20150994 20151237 -222513116 + AluJb SINE Alu 55 292 -20 459 244 184 35 chr1 20151690 20151891 -222512462 + MIR SINE MIR 14 244 -18 313 248 305 0 chr1 20151957 20152098 -222512255 - MIR SINE MIR -27 235 52 285 287 258 0 chr1 20153384 20153551 -222510802 - MIR SINE MIR -3 259 50 276 298 169 0 chr1 20153795 20153919 -222510434 - MIR3 SINE MIR -32 176 32 275 156 0 0 chr1 20154251 20154296 -222510057 + MER103 DNA DNA 55 99 -67 386 258 168 26 chr1 20154671 20154826 -222509527 + MIR SINE MIR 12 188 -74 611 139 0 146 chr1 20156169 20156306 -222508047 + FLAM_C SINE Alu 2 118 -25 1433 155 4 42 chr1 20156934 20157198 -222507155 + AluJo SINE Alu 57 310 -2 1882 181 3 0 chr1 20158165 20158475 -222505878 + AluSx SINE Alu 2 312 0 395 253 116 16 chr1 20158490 20158680 -222505673 + MER102a DNA MER1_type 97 305 -25 1011 226 88 25 chr1 20159338 20159656 -222504697 + Charlie1 DNA MER1_type 775 1112 -1649 1678 177 3 48 chr1 20160730 20161040 -222503313 - AluJb SINE Alu -16 296 1 22 0 0 0 chr1 20161146 20161168 -222503185 + AT_rich Low_complexity Low_complexity 1 22 0 428 309 149 0 chr1 20161991 20162192 -222502161 + MIR SINE MIR 29 259 -3 946 170 33 6 chr1 20162490 20162672 -222501681 + MER20 DNA MER1_type 33 219 0 1939 51 42 4 chr1 20162798 20163071 -222501282 + AluY SINE Alu 35 316 0 2037 153 0 10 chr1 20163823 20164001 -222500352 - AluJo SINE Alu -1 311 136 1803 147 42 3 chr1 20164001 20164286 -222500067 - AluJb SINE Alu -16 296 1 2037 153 0 10 chr1 20164286 20164421 -222499932 - AluJo SINE Alu -176 136 1 1641 111 0 0 chr1 20164693 20164909 -222499444 + 7SLRNA srpRNA srpRNA 1 216 -104 325 279 221 0 chr1 20164925 20165061 -222499292 + MIR3 SINE MIR 16 181 -27 22 0 0 0 chr1 20165929 20165951 -222498402 + GC_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr1 20165960 20166000 -222498353 + GC_rich Low_complexity Low_complexity 1 40 0 201 108 0 0 chr1 20166095 20166132 -222498221 + (CGCGG)n Simple_repeat Simple_repeat 5 41 0 231 114 0 0 chr1 20166369 20166404 -222497949 + (CAGCC)n Simple_repeat Simple_repeat 5 39 0 341 208 78 0 chr1 20166524 20166601 -222497752 - L2 LINE L2 -19 3294 3212 2374 60 25 0 chr1 20166667 20166952 -222497401 + AluSc SINE Alu 1 292 -17 183 100 0 0 chr1 20167057 20167087 -222497266 + (TC)n Simple_repeat Simple_repeat 1 30 0 501 289 52 0 chr1 20167380 20167515 -222496838 - L2 LINE L2 -11 3302 3161 993 101 22 7 chr1 20167525 20167663 -222496690 + AluSq/x SINE Alu 1 140 -173 2520 45 3 0 chr1 20167664 20167954 -222496399 + AluY SINE Alu 1 291 -20 520 251 114 132 chr1 20168018 20168618 -222495735 - L2 LINE L2 -254 3059 2450 1932 123 22 51 chr1 20168618 20168934 -222495419 - AluJo SINE Alu -5 307 1 1919 140 71 14 chr1 20168935 20169299 -222495054 - L1MC1 LINE L1 -9 6324 5940 520 251 114 132 chr1 20169299 20169368 -222494985 - L2 LINE L2 -862 2451 2385 2589 71 0 0 chr1 20169482 20169793 -222494560 + AluY SINE Alu 1 311 0 2401 92 0 3 chr1 20170429 20170732 -222493621 + AluSx SINE Alu 1 302 -10 226 267 53 0 chr1 20171067 20171142 -222493211 + L1MC5 LINE L1 7800 7878 -83 2063 129 0 28 chr1 20171808 20172125 -222492228 + AluJo SINE Alu 1 308 -4 195 42 0 0 chr1 20172308 20172332 -222492021 + (TTG)n Simple_repeat Simple_repeat 2 25 0 210 281 0 0 chr1 20172404 20172461 -222491892 - MIR SINE MIR -121 141 85 1516 96 0 0 chr1 20172679 20172876 -222491477 + AluSg/x SINE Alu 99 295 -15 2263 128 0 0 chr1 20173440 20173746 -222490607 - AluSx SINE Alu -6 306 1 371 284 106 15 chr1 20173766 20173971 -222490382 + L1ME4a LINE L1 5676 5896 -225 248 248 18 53 chr1 20174000 20174113 -222490240 + L1ME4a LINE L1 5968 6076 -45 240 250 177 21 chr1 20174144 20174240 -222490113 - L1ME4a LINE L1 -1 6120 6010 766 206 126 32 chr1 20174343 20174590 -222489763 + L1MB8 LINE L1 5909 6178 0 301 248 165 16 chr1 20175179 20175300 -222489053 + L1ME4a LINE L1 5544 5682 -439 331 247 78 65 chr1 20175443 20175597 -222488756 + L1ME4a LINE L1 5931 6086 -35 216 0 0 0 chr1 20175977 20176001 -222488352 + (T)n Simple_repeat Simple_repeat 1 24 0 1501 101 0 68 chr1 20176020 20176239 -222488114 - AluSx SINE Alu -108 204 1 2011 149 14 0 chr1 20178210 20178505 -222485848 + AluSx SINE Alu 1 299 -13 261 146 0 0 chr1 20178505 20178553 -222485800 + (GA)n Simple_repeat Simple_repeat 1 48 0 1992 162 0 9 chr1 20178563 20178878 -222485475 + AluJo SINE Alu 1 312 0 1374 159 13 25 chr1 20178933 20179172 -222485181 - MER46A DNA MER2_type 0 236 1 774 254 97 0 chr1 20179178 20179363 -222484990 - MIR SINE MIR -32 230 28 193 259 0 52 chr1 20180552 20180610 -222483743 - L2 LINE L2 -2 3270 3216 23 33 0 0 chr1 20180646 20180676 -222483677 + AT_rich Low_complexity Low_complexity 1 30 0 304 363 24 8 chr1 20181021 20181145 -222483208 + L2 LINE L2 3172 3297 -16 2191 135 0 3 chr1 20181497 20181808 -222482545 - AluSx SINE Alu -2 310 1 2285 113 3 0 chr1 20181953 20182264 -222482089 - AluSx SINE Alu 0 312 1 380 258 295 11 chr1 20182516 20182706 -222481647 - MIR SINE MIR -3 259 16 384 311 36 36 chr1 20183217 20183384 -222480969 - MIR SINE MIR -56 206 40 2070 142 7 0 chr1 20184619 20184915 -222479438 - AluSx SINE Alu -14 298 1 325 328 107 20 chr1 20186262 20186506 -222477847 + L1ME LINE L1 5384 5648 -473 424 200 0 0 chr1 20186883 20186963 -222477390 + MER116 DNA Mariner 1 80 0 2403 85 0 13 chr1 20187042 20187359 -222476994 - AluSq SINE Alu 0 313 1 3289 148 58 0 chr1 20188379 20188947 -222475406 + Tigger7 DNA MER2_type 9 609 -1878 2471 73 3 0 chr1 20189076 20189378 -222474975 - AluY SINE Alu -6 305 3 731 141 31 16 chr1 20189380 20189508 -222474845 - FLAM_C SINE Alu -3 140 11 427 176 0 0 chr1 20189521 20189595 -222474758 + Tigger7 DNA MER2_type 2414 2487 0 21 36 0 0 chr1 20189892 20189920 -222474433 + GC_rich Low_complexity Low_complexity 1 28 0 286 286 0 44 chr1 20189996 20190087 -222474266 - MIR SINE MIR -143 119 33 421 300 61 77 chr1 20190529 20190776 -222473577 + MIR SINE MIR 20 262 0 938 136 41 7 chr1 20190825 20190972 -222473381 + FAM SINE Alu 21 172 -13 2614 57 0 19 chr1 20190976 20191292 -222473061 + AluY SINE Alu 1 310 -1 270 161 54 0 chr1 20191293 20191349 -222473004 - MIR3 SINE MIR -46 162 104 886 172 31 0 chr1 20191653 20191816 -222472537 - MER3 DNA MER1_type -86 123 3 405 177 0 13 chr1 20242229 20242308 -222422045 + MER116 DNA Mariner 3 80 0 2428 85 0 13 chr1 20242387 20242704 -222421649 - AluSq SINE Alu 0 313 1 2091 142 0 3 chr1 20242704 20243006 -222421347 - AluSq SINE Alu -12 301 1 478 163 225 4 chr1 20243008 20243157 -222421196 + MSTA LTR MaLR 177 360 -68 905 191 12 0 chr1 20243160 20243322 -222421031 + LOR1-int LTR ERV1 5490 5653 -2467 1272 170 28 25 chr1 20243324 20243607 -222420746 + LTR8A LTR ERV1 386 669 -58 2187 133 10 0 chr1 20243697 20244006 -222420347 + AluSx SINE Alu 1 312 0 1989 123 0 11 chr1 20244014 20244283 -222420070 + AluSx SINE Alu 2 267 -45 439 314 63 0 chr1 20244425 20244600 -222419753 + MIR SINE MIR 12 197 -65 2461 82 0 0 chr1 20244604 20244898 -222419455 + AluSg SINE Alu 1 294 -16 2169 137 0 19 chr1 20244915 20245230 -222419123 + AluJb SINE Alu 1 309 -3 827 138 8 0 chr1 20246603 20246726 -222417627 - FLAM_C SINE Alu -7 136 13 1514 151 0 4 chr1 20247078 20247303 -222417050 + AluJb SINE Alu 89 312 0 432 218 73 24 chr1 20247496 20247620 -222416733 - LTR67 LTR ERVL 0 557 428 243 206 10 155 chr1 20247666 20247696 -222416657 + MER91C DNA MER1_type 36 69 -71 419 142 92 231 chr1 20247696 20247765 -222416588 + MER58A DNA MER1_type 1 78 -2342 2229 125 0 22 chr1 20247765 20248084 -222416269 + AluSx SINE Alu 1 312 0 419 142 92 231 chr1 20248084 20248274 -222416079 + MER58A DNA MER1_type 78 224 0 243 206 10 155 chr1 20248274 20248340 -222416013 + MER91C DNA MER1_type 69 118 -22 4752 166 69 33 chr1 20248761 20249795 -222414558 - MER11C LTR ERVK 0 1071 1 563 197 6 109 chr1 20249805 20249988 -222414365 + L2 LINE L2 2538 2701 -613 500 59 15 0 chr1 20250021 20250089 -222414264 - MSTA LTR MaLR 0 428 360 1862 161 3 0 chr1 20250091 20250376 -222413977 + AluSx SINE Alu 5 290 -22 321 328 107 20 chr1 20250622 20250866 -222413487 - L1ME LINE L1 -473 5648 5384 2070 142 7 0 chr1 20252213 20252509 -222411844 + AluSx SINE Alu 1 298 -14 31 179 0 0 chr1 20253496 20253552 -222410801 + GC_rich Low_complexity Low_complexity 1 56 0 1112 159 44 9 chr1 20253619 20253845 -222410508 - MSTA LTR MaLR -160 268 35 1996 99 51 0 chr1 20253845 20254118 -222410235 + AluSx SINE Alu 1 287 -25 1299 258 120 2 chr1 20254130 20254673 -222409680 + L2 LINE L2 2691 3311 -2 1011 158 6 6 chr1 20254952 20255116 -222409237 - AluJo/FRAM SINE Alu -2 300 137 1915 89 3 98 chr1 20255119 20255468 -222408885 - AluSx SINE Alu 0 302 1 356 314 95 0 chr1 20255487 20255592 -222408761 - L2 LINE L2 -5 3267 3153 896 176 0 0 chr1 20255686 20255828 -222408525 + FLAM_C SINE Alu 1 142 -1 2436 107 0 0 chr1 20255849 20256158 -222408195 + AluSx SINE Alu 1 309 -3 1991 98 4 11 chr1 20256286 20256587 -222407766 + AluSx SINE Alu 19 317 0 190 94 57 75 chr1 20256590 20256643 -222407710 - L2 LINE L2 -4 3309 3258 1906 155 3 13 chr1 20256869 20257172 -222407181 - AluJb SINE Alu -12 300 1 625 206 75 0 chr1 20257274 20257420 -222406933 + MER2 DNA MER2_type 1 157 -188 524 145 0 0 chr1 20257440 20257516 -222406837 - FRAM/FAM SINE Alu -95 81 6 566 49 37 0 chr1 20257519 20257601 -222406752 + MER2 DNA MER2_type 122 206 -139 276 111 0 0 chr1 20257698 20257743 -222406610 + (TG)n Simple_repeat Simple_repeat 2 46 0 740 229 0 7 chr1 20258097 20258241 -222406112 - AluSq/x SINE Alu -168 144 2 1485 120 214 13 chr1 20258244 20258552 -222405801 - MSTA LTR MaLR -57 371 2 680 160 66 0 chr1 20258552 20258658 -222405695 - FLAM_C SINE Alu -28 115 3 1387 191 32 12 chr1 20259123 20259374 -222404979 + AluJo SINE Alu 1 256 -56 2609 87 34 11 chr1 20259444 20259800 -222404553 - THE1B LTR MaLR 0 364 1 384 311 36 36 chr1 20260382 20260549 -222403804 + MIR SINE MIR 40 206 -56 380 258 295 11 chr1 20261060 20261250 -222403103 + MIR SINE MIR 16 259 -3 2285 113 3 0 chr1 20261502 20261813 -222402540 + AluSx SINE Alu 1 312 0 192 267 217 17 chr1 20261837 20261957 -222402396 - L2 LINE L2 -489 2825 2682 1880 148 0 0 chr1 20261958 20262228 -222402125 + AluSx SINE Alu 1 270 -42 314 288 82 60 chr1 20262735 20262919 -222401434 + L2 LINE L2 2615 2802 -512 242 287 176 80 chr1 20263010 20263198 -222401155 + L2 LINE L2 3044 3249 -23 535 197 181 48 chr1 20263329 20263517 -222400836 + MIR SINE MIR 2 214 -48 721 132 0 0 chr1 20263588 20263694 -222400659 - AluSg/x SINE Alu -8 302 197 485 219 169 0 chr1 20264475 20264635 -222399718 - MIR SINE MIR -74 188 2 187 163 82 20 chr1 20264800 20264849 -222399504 - L2 LINE L2 0 3313 3262 2433 88 0 0 chr1 20265049 20265345 -222399008 + AluSq SINE Alu 1 296 -17 1602 184 0 11 chr1 20266188 20266455 -222397898 + AluJb SINE Alu 22 285 -27 1931 118 0 4 chr1 20266474 20266728 -222397625 - AluSx SINE Alu -59 253 1 227 91 0 23 chr1 20266737 20266781 -222397572 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 890 206 0 13 chr1 20266783 20266938 -222397415 - FAM SINE Alu -27 158 6 1491 161 4 4 chr1 20266985 20267221 -222397132 - AluJo SINE Alu -76 236 1 1516 96 0 0 chr1 20267397 20267594 -222396759 - AluSg/x SINE Alu -15 297 101 210 281 0 0 chr1 20267812 20267869 -222396484 + MIR SINE MIR 85 141 -121 195 42 0 0 chr1 20267941 20267965 -222396388 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2063 129 0 28 chr1 20268148 20268465 -222395888 - AluJo SINE Alu -4 308 1 226 267 53 0 chr1 20269131 20269206 -222395147 - L1MC5 LINE L1 -83 7878 7800 2373 89 0 3 chr1 20269541 20269844 -222394509 - AluSx SINE Alu -10 302 1 313 145 48 0 chr1 20270293 20270355 -222393998 + MSTA LTR MaLR 364 428 0 2032 128 47 0 chr1 20270439 20270736 -222393617 - AluJb SINE Alu -1 311 1 2159 43 85 0 chr1 20271087 20271345 -222393008 - AluY SINE Alu -29 282 3 2268 120 0 0 chr1 20271348 20271657 -222392696 - AluSg1 SINE Alu 0 309 1 2348 72 7 3 chr1 20272218 20272510 -222391843 + AluSq SINE Alu 1 293 -20 1277 166 0 19 chr1 20272668 20272873 -222391480 - AluJb SINE Alu -2 310 110 1073 113 14 0 chr1 20272912 20273054 -222391299 + AluSq/x SINE Alu 1 144 -168 350 212 82 88 chr1 20273330 20273500 -222390853 + L1ME4a LINE L1 5724 5892 -229 2242 110 0 10 chr1 20273520 20273821 -222390532 - AluSx SINE Alu -14 298 1 951 201 6 11 chr1 20273829 20274008 -222390345 - AluJo SINE Alu 0 312 135 887 146 0 29 chr1 20274138 20274275 -222390078 - AluJo SINE Alu -169 133 1 340 233 97 19 chr1 20274334 20274437 -222389916 + L1ME4a LINE L1 5818 5928 -193 1236 198 74 7 chr1 20274480 20274763 -222389590 - MLT2D LTR ERVL -20 394 93 341 237 30 38 chr1 20274802 20274933 -222389420 + L1MC5 LINE L1 7268 7397 -564 2362 88 3 0 chr1 20274934 20275230 -222389123 + AluSx SINE Alu 1 297 -15 270 215 148 20 chr1 20275319 20275468 -222388885 + L1MC5 LINE L1 7550 7717 -244 2135 133 7 0 chr1 20275481 20275790 -222388563 - AluSx SINE Alu -1 311 1 1366 194 56 0 chr1 20275820 20276052 -222388301 + AluJb SINE Alu 1 245 -67 2011 149 14 0 chr1 20278087 20278382 -222385971 + AluSx SINE Alu 1 299 -13 261 146 0 0 chr1 20278382 20278430 -222385923 + (GA)n Simple_repeat Simple_repeat 1 48 0 1992 162 0 9 chr1 20278440 20278755 -222385598 + AluJo SINE Alu 1 312 0 1401 155 13 25 chr1 20278810 20279049 -222385304 - MER46A DNA MER2_type 0 236 1 774 254 97 0 chr1 20279055 20279240 -222385113 - MIR SINE MIR -32 230 28 361 300 113 13 chr1 20280086 20280236 -222384117 - MIR SINE MIR -86 176 12 610 286 7 7 chr1 20280381 20280521 -222383832 + MIR SINE MIR 15 154 -108 2861 165 58 2 chr1 20280521 20281043 -222383310 + Tigger7 DNA MER2_type 1 551 -182 530 167 0 0 chr1 20281045 20281129 -222383224 + Tigger7 DNA MER2_type 2504 2587 0 255 309 11 11 chr1 20281132 20281226 -222383127 + MIR SINE MIR 156 249 -13 270 320 196 19 chr1 20283849 20284212 -222380141 - L3 LINE CR1 -3 1574 1148 1100 143 7 0 chr1 20284625 20284779 -222379574 - AluJb SINE Alu -157 155 1 21 0 0 0 chr1 20284842 20284863 -222379490 + AT_rich Low_complexity Low_complexity 1 21 0 2566 66 0 0 chr1 20285221 20285525 -222378828 + AluY SINE Alu 1 304 -7 875 112 12 100 chr1 20285779 20285949 -222378404 + AluSg/x SINE Alu 156 310 0 227 37 0 0 chr1 20285950 20285977 -222378376 - L1MB5 LINE L1 -40 6134 6108 715 133 210 56 chr1 20288679 20288874 -222375479 + MER46A DNA MER2_type 1 225 -11 2442 60 0 66 chr1 20288921 20289254 -222375099 + AluY SINE Alu 1 311 0 1574 148 130 4 chr1 20289306 20289576 -222374777 + AluJo SINE Alu 9 312 0 1822 181 3 16 chr1 20289664 20289968 -222374385 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 20289986 20290008 -222374345 + AT_rich Low_complexity Low_complexity 1 22 0 350 237 85 10 chr1 20290143 20290273 -222374080 - MIR SINE MIR -62 146 42 490 295 44 26 chr1 20291688 20291925 -222372428 + MIR SINE MIR 9 248 -14 653 200 0 0 chr1 20291947 20292052 -222372301 + AluJo SINE Alu 2 106 -206 1774 123 44 0 chr1 20292158 20292409 -222371944 + AluJb SINE Alu 8 269 -43 15176 85 2 1 chr1 20292990 20295030 -222369323 - HERVK9 LTR ERVK -2537 3379 1337 3138 116 13 20 chr1 20295024 20295547 -222368806 - HERVK9 LTR ERVK -5309 607 1 * 3520 108 12 6 chr1 20295547 20296055 -222368298 - MER9 LTR ERVK 0 511 1 1050 178 16 5 chr1 20296086 20296257 -222368096 + AluJo SINE Alu 107 275 -37 399 21 0 0 chr1 20296257 20296305 -222368048 + (TC)n Simple_repeat Simple_repeat 2 49 0 279 0 0 0 chr1 20296304 20296335 -222368018 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 1050 178 16 5 chr1 20296305 20296354 -222367999 + AluJo SINE Alu 275 299 -13 1822 151 3 14 chr1 20296354 20296639 -222367714 + AluJb SINE Alu 14 295 -17 35 24 0 0 chr1 20296639 20296681 -222367672 + AT_rich Low_complexity Low_complexity 1 42 0 1446 205 50 14 chr1 20296681 20296799 -222367554 + L1M4 LINE L1 4382 4494 -1652 2230 109 0 0 chr1 20296799 20297103 -222367250 + AluSx SINE Alu 1 304 0 1446 205 50 14 chr1 20297103 20297407 -222366946 + L1M4 LINE L1 4494 4820 -1326 2392 100 13 0 chr1 20297435 20297744 -222366609 + AluSp SINE Alu 1 313 0 892 194 63 8 chr1 20298233 20298485 -222365868 - L1M4 LINE L1 -949 5197 4932 1388 164 0 94 chr1 20298486 20298607 -222365746 + AluJo SINE Alu 39 170 -142 2044 134 3 7 chr1 20298607 20298905 -222365448 + AluJb SINE Alu 9 305 -7 1388 164 0 94 chr1 20298905 20299082 -222365271 + AluJo SINE Alu 170 309 -3 944 205 87 14 chr1 20299084 20299372 -222364981 - L1M4 LINE L1 -1216 4930 4622 2455 75 0 0 chr1 20299407 20299701 -222364652 + AluSg1 SINE Alu 6 299 -10 1464 163 39 19 chr1 20299745 20300003 -222364350 + AluJo SINE Alu 1 263 -49 2020 155 3 0 chr1 20300261 20300557 -222363796 - AluJb SINE Alu -15 297 1 369 289 66 13 chr1 20300560 20300712 -222363641 - MIR SINE MIR -56 206 47 558 241 126 6 chr1 20301423 20301597 -222362756 - MIR SINE MIR -54 208 14 450 111 25 37 chr1 20301983 20302064 -222362289 + MER116 DNA Mariner 1 80 0 1256 185 3 96 chr1 20302302 20302425 -222361928 + AluJo SINE Alu 1 134 -178 534 31 0 0 chr1 20302425 20302489 -222361864 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 1256 185 3 96 chr1 20302489 20302678 -222361675 + AluJo SINE Alu 134 284 -28 221 86 57 0 chr1 20303110 20303145 -222361208 + MIR SINE MIR 108 144 -64 534 202 65 19 chr1 20303193 20303347 -222361006 + MIR SINE MIR 25 186 -62 803 150 0 39 chr1 20304016 20304143 -222360210 - FLAM_A SINE Alu -10 123 2 191 265 241 0 chr1 20304465 20304548 -222359805 + MIR SINE MIR 89 191 -71 242 250 90 30 chr1 20304591 20304691 -222359662 - MIR SINE MIR 0 262 157 294 259 25 12 chr1 20305088 20305169 -222359184 + MIR SINE MIR 114 195 -67 2135 139 0 7 chr1 20305188 20305491 -222358862 + AluSg SINE Alu 1 301 -9 396 323 130 10 chr1 20306530 20306722 -222357631 - MIR SINE MIR -27 235 21 360 286 9 18 chr1 20306749 20306861 -222357492 - L2 LINE L2 -10 3303 3193 241 149 43 0 chr1 20307383 20307430 -222356923 - MER103 DNA DNA -11 155 107 697 279 129 72 chr1 20307437 20307741 -222356612 + L2 LINE L2 1584 1869 -1445 760 136 0 50 chr1 20307741 20307881 -222356472 - FLAM_C SINE Alu 0 133 1 697 279 129 72 chr1 20307881 20308174 -222356179 + L2 LINE L2 1869 2215 -1099 247 317 118 57 chr1 20308891 20309137 -222355216 + L2 LINE L2 2979 3239 -33 401 217 66 93 chr1 20309357 20309445 -222354908 + L1M4 LINE L1 4342 4431 -1715 2434 68 3 3 chr1 20309445 20309737 -222354616 - AluSp SINE Alu -18 295 4 401 217 66 93 chr1 20309737 20309906 -222354447 + L1M4 LINE L1 4431 4592 -1554 1019 156 0 0 chr1 20310030 20310184 -222354169 - FRAM SINE Alu -12 154 1 1014 183 203 12 chr1 20310966 20311059 -222353294 + AluJo SINE Alu 2 76 -236 207 0 0 0 chr1 20311059 20311082 -222353271 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1014 183 203 12 chr1 20311082 20311239 -222353114 + AluJo SINE Alu 76 300 -12 493 182 29 193 chr1 20312073 20312353 -222352000 + MIR SINE MIR 28 261 -1 1719 211 55 0 chr1 20312644 20312990 -222351363 - MLT1A1 LTR MaLR 0 365 1 1704 213 82 47 chr1 20313075 20313549 -222350804 - L1ME1 LINE L1 0 6178 5697 2529 43 0 3 chr1 20313549 20313851 -222350502 + AluY SINE Alu 1 301 -10 1704 213 82 47 chr1 20313851 20313899 -222350454 - L1ME1 LINE L1 -481 5697 5652 1809 154 16 38 chr1 20313925 20314243 -222350110 - AluSx SINE Alu -1 311 1 625 160 56 24 chr1 20314365 20314490 -222349863 - FLAM_C SINE Alu -4 129 1 1489 215 25 30 chr1 20314490 20314894 -222349459 - Charlie4a DNA MER1_type -68 440 39 795 265 113 16 chr1 20315043 20315352 -222349001 + L2 LINE L2 2332 2670 -644 853 129 0 41 chr1 20315352 20315499 -222348854 - FLAM_C SINE Alu -2 141 1 1850 131 38 0 chr1 20315513 20315803 -222348550 - AluJb SINE Alu -11 301 1 268 167 0 0 chr1 20315805 20315847 -222348506 + L2 LINE L2 2659 2700 -614 797 278 0 23 chr1 20315856 20316072 -222348281 + L2 LINE L2 2856 3066 -247 1802 132 0 0 chr1 20316090 20316347 -222348006 - AluSx SINE Alu -55 257 1 700 143 86 24 chr1 20316827 20316956 -222347397 + MER33 DNA MER1_type 1 126 -104 1266 155 58 0 chr1 20316956 20317182 -222347171 + L1MB3 LINE L1 5920 6158 -25 213 214 22 22 chr1 20317186 20317275 -222347078 + (TA)n Simple_repeat Simple_repeat 2 90 0 308 244 23 23 chr1 20317282 20317368 -222346985 - L1MC4 LINE L1 -1339 6703 6618 * 327 276 46 0 chr1 20317294 20317381 -222346972 + L1MC4 LINE L1 6614 6704 -1338 278 171 73 16 chr1 20317382 20317505 -222346848 + (TA)n Simple_repeat Simple_repeat 2 131 0 303 253 69 11 chr1 20317513 20317600 -222346753 - L1MC4 LINE L1 -1339 6703 6612 212 204 19 0 chr1 20317624 20317678 -222346675 + (TA)n Simple_repeat Simple_repeat 2 56 0 27 29 0 0 chr1 20317702 20317736 -222346617 + AT_rich Low_complexity Low_complexity 1 34 0 2177 89 0 52 chr1 20317805 20318129 -222346224 + AluSx SINE Alu 1 307 -5 667 257 99 118 chr1 20318129 20318141 -222346212 + L2 LINE L2 2305 2316 -997 2114 126 0 0 chr1 20318141 20318442 -222345911 + AluSx SINE Alu 1 301 -11 667 257 99 118 chr1 20318442 20318581 -222345772 + L2 LINE L2 2316 2456 -857 1908 140 71 14 chr1 20318581 20318945 -222345408 + L1MC1 LINE L1 5940 6324 -9 1786 123 22 51 chr1 20318946 20319262 -222345091 + AluJo SINE Alu 1 307 -5 667 257 99 118 chr1 20319262 20319862 -222344491 + L2 LINE L2 2455 3059 -254 2373 48 3 0 chr1 20319926 20320216 -222344137 - AluY SINE Alu -20 291 1 925 101 22 7 chr1 20320217 20320355 -222343998 - AluSq/x SINE Alu -172 140 1 499 289 52 0 chr1 20320365 20320500 -222343853 + L2 LINE L2 3161 3302 -11 183 100 0 0 chr1 20320793 20320823 -222343530 + (GA)n Simple_repeat Simple_repeat 1 30 0 924 118 0 7 chr1 20321669 20321804 -222342549 + AluSq/x SINE Alu 1 134 -179 381 314 70 92 chr1 20321901 20322071 -222342282 - L2 LINE L2 -9 3263 3091 1881 128 13 13 chr1 20322071 20322375 -222341978 + AluJb SINE Alu 1 304 -8 381 314 70 92 chr1 20322375 20322949 -222341404 - L2 LINE L2 -181 3091 2534 500 266 41 148 chr1 20323241 20323369 -222340984 + L2 LINE L2 2545 2685 -629 687 128 0 147 chr1 20323369 20323525 -222340828 - FLAM_C SINE Alu 0 133 1 1668 174 0 37 chr1 20323531 20323852 -222340501 - AluJo SINE Alu -3 309 1 500 266 41 148 chr1 20323852 20324134 -222340219 + L2 LINE L2 2690 2917 -397 603 241 36 36 chr1 20324156 20324322 -222340031 - L2 LINE L2 -4 3309 3144 1788 144 3 26 chr1 20324322 20324628 -222339725 + AluJo SINE Alu 1 299 -13 249 252 35 133 chr1 20324638 20324781 -222339572 + L2 LINE L2 3184 3312 -1 1683 165 10 16 chr1 20324976 20325285 -222339068 + AluJb SINE Alu 1 307 -5 276 226 0 0 chr1 20325338 20325391 -222338962 + HAL1 LINE L1 1485 1537 -970 233 222 0 0 chr1 20325423 20325468 -222338885 - LTR67 LTR ERVL -31 526 482 282 263 12 0 chr1 20325468 20325548 -222338805 + HAL1 LINE L1 1561 1641 -866 1927 131 0 3 chr1 20325740 20326030 -222338323 - AluSq SINE Alu 0 313 25 823 188 0 0 chr1 20326041 20326179 -222338174 - AluJb SINE Alu -4 308 171 1543 175 17 118 chr1 20326394 20326468 -222337885 + MLT1A1 LTR MaLR 1 81 -284 1940 162 0 0 chr1 20326468 20326771 -222337582 + AluJb SINE Alu 1 303 -9 1543 175 17 118 chr1 20326771 20327102 -222337251 + MLT1A1 LTR MaLR 81 365 0 739 317 54 5 chr1 20327128 20327352 -222337001 - HERV16 LTR ERVL -4761 235 1 787 258 5 125 chr1 20327358 20327374 -222336979 - LTR16A LTR ERVL -6 444 428 1477 224 83 6 chr1 20327374 20327713 -222336640 + MLT1A1 LTR MaLR 1 365 0 787 258 5 125 chr1 20327713 20327918 -222336435 - LTR16A LTR ERVL -22 428 200 1905 142 30 0 chr1 20327918 20328221 -222336132 - AluSx SINE Alu 0 312 1 787 258 5 125 chr1 20328221 20328248 -222336105 - LTR16A LTR ERVL -250 200 171 2161 133 72 20 chr1 20328248 20328594 -222335759 + THE1B LTR MaLR 1 364 0 787 258 5 125 chr1 20328594 20328711 -222335642 - LTR16A LTR ERVL -279 171 121 1992 117 0 3 chr1 20328819 20329132 -222335221 - AluSq SINE Alu 0 314 3 294 313 22 62 chr1 20329137 20329332 -222335021 - L1M4 LINE L1 -874 5272 5093 2007 128 7 0 chr1 20329332 20329630 -222334723 + AluSx SINE Alu 1 300 -12 294 313 22 62 chr1 20329630 20329754 -222334599 - L1M4 LINE L1 -1053 5093 4966 185 334 97 43 chr1 20329906 20330235 -222334118 + L2 LINE L2 1930 2276 -1038 1989 137 3 0 chr1 20330276 20330576 -222333777 - AluSg SINE Alu -9 301 1 2548 136 4 73 chr1 20330581 20330629 -222333724 - L1MC1 LINE L1 -15 6318 6268 1759 123 0 66 chr1 20330629 20330963 -222333390 + AluJo SINE Alu 1 312 0 2548 136 4 73 chr1 20330963 20331169 -222333184 - L1MC1 LINE L1 -65 6268 6049 1994 125 3 3 chr1 20331169 20331466 -222332887 + AluSx SINE Alu 1 297 -15 2548 136 4 73 chr1 20331466 20331601 -222332752 - L1MC1 LINE L1 -284 6049 5968 2008 131 3 6 chr1 20331601 20331914 -222332439 - AluSx SINE Alu 0 312 1 2548 136 4 73 chr1 20331914 20332029 -222332324 - L1MC1 LINE L1 -365 5968 5847 198 219 10 156 chr1 20332127 20332223 -222332130 - MIR SINE MIR -70 192 111 2018 107 0 33 chr1 20332447 20332747 -222331606 + AluSx SINE Alu 12 301 -11 22 35 0 0 chr1 20333152 20333181 -222331172 + AT_rich Low_complexity Low_complexity 1 29 0 303 289 82 0 chr1 20333294 20333391 -222330962 + L2 LINE L2 3205 3309 -4 2328 93 0 0 chr1 20334014 20334324 -222330029 - AluSg SINE Alu 0 310 1 2093 100 0 0 chr1 20334334 20334643 -222329710 - AluSx SINE Alu 0 309 1 1625 270 76 13 chr1 20334643 20335180 -222329173 + L2 LINE L2 1608 2178 -1136 180 0 0 0 chr1 20335769 20335789 -222328564 + (TTC)n Simple_repeat Simple_repeat 1 20 0 2121 120 0 0 chr1 20335791 20336091 -222328262 - AluSq SINE Alu -13 300 1 1951 238 118 25 chr1 20336183 20336822 -222327531 + L2 LINE L2 2318 3010 -303 2006 137 0 3 chr1 20336850 20337149 -222327204 - AluSx SINE Alu -14 298 1 2205 99 3 0 chr1 20337362 20337656 -222326697 + AluSp SINE Alu 2 296 -17 1470 177 4 11 chr1 20338502 20338768 -222325585 + AluJb SINE Alu 22 285 -27 1820 114 0 4 chr1 20338787 20339041 -222325312 - AluSx SINE Alu -59 253 1 227 91 0 23 chr1 20339050 20339094 -222325259 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 828 200 0 13 chr1 20339096 20339251 -222325102 - FAM SINE Alu -27 158 6 1717 167 3 3 chr1 20339262 20339562 -222324791 - AluJo SINE Alu -12 300 1 1927 125 7 0 chr1 20339567 20339854 -222324499 - AluSx SINE Alu -13 299 11 1971 136 0 0 chr1 20339966 20340253 -222324100 + AluJb SINE Alu 9 295 -17 180 0 0 0 chr1 20340330 20340350 -222324003 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1443 159 12 4 chr1 20340350 20340595 -222323758 - AluJb SINE Alu -65 247 1 1988 120 0 0 chr1 20340926 20341201 -222323152 + AluSx SINE Alu 1 275 -37 186 71 0 0 chr1 20341205 20341233 -222323120 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 681 256 43 39 chr1 20341309 20341543 -222322810 - L2 LINE L2 0 3313 3079 338 91 0 0 chr1 20341560 20341604 -222322749 - LTR33 LTR ERVL 0 521 478 1714 141 3 28 chr1 20341695 20341985 -222322368 + AluJb SINE Alu 1 283 -29 333 62 0 0 chr1 20341985 20342033 -222322320 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 2001 117 3 38 chr1 20342033 20342350 -222322003 + AluSx SINE Alu 2 307 -5 484 198 207 0 chr1 20342357 20342478 -222321875 - LTR33 LTR ERVL -50 471 326 1500 140 68 118 chr1 20342483 20342738 -222321615 - MER7A DNA MER2_type -2692 346 115 2270 101 0 0 chr1 20342738 20343045 -222321308 - AluSx SINE Alu -5 307 1 1500 140 68 118 chr1 20343045 20343154 -222321199 - MER7A DNA MER2_type -2923 115 2 1457 174 56 11 chr1 20343175 20343462 -222320891 + AluSg SINE Alu 1 300 -10 235 294 15 15 chr1 20343530 20343598 -222320755 - MIR SINE MIR -124 84 17 1662 225 48 48 chr1 20343598 20343947 -222320406 - MLT1C LTR MaLR 0 467 119 1890 133 10 23 chr1 20343947 20344256 -222320097 - AluJo SINE Alu -7 305 1 1662 225 48 48 chr1 20344256 20344273 -222320080 - MLT1C LTR MaLR -348 119 103 1983 103 3 58 chr1 20344273 20344585 -222319768 - AluSq SINE Alu -18 295 1 1662 225 48 48 chr1 20344585 20344679 -222319674 - MLT1C LTR MaLR -363 104 6 1309 236 69 71 chr1 20344825 20345077 -222319276 + L1ME3A LINE L1 5412 5663 -507 1587 164 7 25 chr1 20345077 20345363 -222318990 + AluJb SINE Alu 1 281 -31 1309 236 69 71 chr1 20345363 20345441 -222318912 + L1ME3A LINE L1 5663 5740 -430 2184 115 0 0 chr1 20345441 20345746 -222318607 + AluSx SINE Alu 1 305 -7 1309 236 69 71 chr1 20345746 20345966 -222318387 + L1ME3A LINE L1 5740 5962 -208 1446 177 60 21 chr1 20346037 20346320 -222318033 + AluJo SINE Alu 3 296 -16 926 190 0 0 chr1 20346454 20346617 -222317736 - FRAM SINE Alu -21 155 1 1203 153 113 18 chr1 20346631 20346906 -222317447 - AluJb SINE Alu -11 301 1 1879 151 6 3 chr1 20347143 20347454 -222316899 - AluJo SINE Alu 0 312 1 1783 160 3 0 chr1 20347875 20348191 -222316162 + AluJb SINE Alu 1 317 0 907 199 0 12 chr1 20348196 20348362 -222315991 + FRAM SINE Alu 3 166 0 573 227 61 0 chr1 20348400 20348532 -222315821 - L1MC4a LINE L1 -1197 6611 6472 427 209 12 0 chr1 20348653 20348739 -222315614 - L2 LINE L2 0 3313 3227 288 237 14 7 chr1 20348785 20348854 -222315499 - MIR SINE MIR -126 82 17 303 285 146 14 chr1 20348957 20349101 -222315252 + MIR SINE MIR 79 241 -21 856 148 34 0 chr1 20349102 20349251 -222315102 - AluJb SINE Alu -22 290 137 2286 79 3 0 chr1 20349374 20349679 -222314674 - AluY SINE Alu -5 306 1 356 314 95 0 chr1 20349698 20349803 -222314550 - L2 LINE L2 -5 3267 3153 825 176 0 0 chr1 20349897 20350039 -222314314 + FLAM_C SINE Alu 1 142 -1 2280 105 0 0 chr1 20350060 20350366 -222313987 + AluSx SINE Alu 1 306 -6 1836 105 4 11 chr1 20350497 20350798 -222313555 + AluSx SINE Alu 19 317 0 192 94 57 75 chr1 20350801 20350854 -222313499 - L2 LINE L2 -4 3309 3258 1756 155 3 13 chr1 20351080 20351383 -222312970 - AluJb SINE Alu -12 300 1 690 199 75 0 chr1 20351485 20351631 -222312722 + MER2 DNA MER2_type 1 157 -188 510 145 0 0 chr1 20351651 20351727 -222312626 - AluJo SINE Alu -95 217 142 591 49 37 0 chr1 20351730 20351812 -222312541 + MER2 DNA MER2_type 122 206 -139 258 116 0 0 chr1 20351909 20351952 -222312401 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 71 0 0 chr1 20352922 20352964 -222311389 + GC_rich Low_complexity Low_complexity 1 42 0 318 339 50 8 chr1 20353520 20353641 -222310712 - MIR SINE MIR -64 144 19 424 235 0 0 chr1 20353745 20353826 -222310527 + L2 LINE L2 3193 3273 -40 559 232 42 0 chr1 20353892 20354034 -222310319 + MIR SINE MIR 71 218 -44 872 123 0 0 chr1 20354193 20354323 -222310030 + FLAM_C SINE Alu 2 131 -2 299 264 130 82 chr1 20354331 20354562 -222309791 + MIR SINE MIR 20 261 -1 32 26 0 0 chr1 20354569 20354608 -222309745 + AT_rich Low_complexity Low_complexity 1 39 0 821 142 0 22 chr1 20354608 20354742 -222309611 - AluJo SINE Alu -176 136 6 1738 161 3 7 chr1 20354755 20355054 -222309299 - AluJb SINE Alu -14 298 1 299 207 241 0 chr1 20355388 20355475 -222308878 - MIR SINE MIR -122 140 33 308 94 0 57 chr1 20355768 20355821 -222308532 - MADE1 DNA Mariner -29 51 2 182 179 0 0 chr1 20355958 20355986 -222308367 + MIR SINE MIR 125 152 -56 1804 169 3 0 chr1 20356303 20356598 -222307755 - AluJb SINE Alu -16 296 1 1882 154 7 0 chr1 20356994 20357300 -222307053 + AluJb SINE Alu 1 308 -4 572 247 124 5 chr1 20357724 20357918 -222306435 + L2 LINE L2 3095 3311 -2 1982 106 3 3 chr1 20358745 20359050 -222305303 + AluSq SINE Alu 1 305 0 225 299 131 19 chr1 20359438 20359545 -222304808 - L2 LINE L2 -559 2755 2637 428 216 112 32 chr1 20359787 20359912 -222304441 + MIR SINE MIR 107 241 -21 1848 136 3 10 chr1 20359922 20360223 -222304130 + AluSx SINE Alu 1 299 -13 210 308 33 33 chr1 20360409 20360500 -222303853 - L2 LINE L2 -39 3233 3143 294 225 34 79 chr1 20360643 20360732 -222303621 - MIR SINE MIR -3 259 175 2366 178 55 38 chr1 20360945 20361424 -222302929 - L1MB8 LINE L1 0 6178 5686 738 159 32 0 chr1 20361424 20361550 -222302803 - FLAM_A SINE Alu -3 130 1 2366 178 55 38 chr1 20361550 20361654 -222302699 - L1MB8 LINE L1 -492 5686 5585 222 292 129 72 chr1 20361654 20362003 -222302350 - L2 LINE L2 -565 2749 2381 2319 113 0 10 chr1 20362161 20362470 -222301883 + AluSx SINE Alu 1 306 -6 1300 214 153 8 chr1 20363403 20363776 -222300577 + L1ME1 LINE L1 4618 5044 -1102 815 207 96 12 chr1 20364307 20364558 -222299795 + L1ME1 LINE L1 5012 5283 -863 425 252 54 0 chr1 20364581 20364692 -222299661 - FLAM_C SINE Alu -25 118 2 1039 164 53 0 chr1 20364692 20364863 -222299490 - AluJb SINE Alu -1 311 132 22 0 0 0 chr1 20364863 20364885 -222299468 + AT_rich Low_complexity Low_complexity 1 22 0 2326 218 35 21 chr1 20364912 20365490 -222298863 + L1ME1 LINE L1 5358 5943 -223 2269 99 3 0 chr1 20365560 20365854 -222298499 + AluSc SINE Alu 1 295 -14 1117 152 12 0 chr1 20366066 20366237 -222298116 - AluJb SINE Alu 0 312 140 2191 117 6 25 chr1 20366633 20366949 -222297404 - AluSx SINE Alu -2 310 1 958 193 6 0 chr1 20367167 20367333 -222297020 - AluJb SINE Alu -8 304 138 2370 101 3 0 chr1 20367387 20367683 -222296670 + AluSx SINE Alu 1 297 -15 2114 94 22 50 chr1 20367727 20368046 -222296307 - AluY SINE Alu -1 310 1 1902 144 0 0 chr1 20368138 20368408 -222295945 + AluSx SINE Alu 1 270 -42 314 288 82 60 chr1 20368915 20369099 -222295254 + L2 LINE L2 2615 2802 -512 247 286 169 79 chr1 20369190 20369379 -222294974 + L2 LINE L2 3044 3249 -23 535 197 181 48 chr1 20369510 20369698 -222294655 + MIR SINE MIR 2 214 -48 721 132 0 0 chr1 20369769 20369875 -222294478 - AluSg/x SINE Alu -8 304 199 261 198 0 0 chr1 20370043 20370124 -222294229 + (CA)n Simple_repeat Simple_repeat 2 82 0 1223 30 0 0 chr1 20370181 20370314 -222294039 - AluY SINE Alu -178 133 1 507 217 34 91 chr1 20371009 20371184 -222293169 - MIR SINE MIR -26 236 72 995 168 0 58 chr1 20371270 20371461 -222292892 - AluJb SINE Alu -12 300 121 2323 89 10 3 chr1 20371609 20371913 -222292440 - AluSx SINE Alu -6 306 1 208 195 24 0 chr1 20372427 20372468 -222291885 + MIR SINE MIR 20 61 -201 198 103 0 0 chr1 20373604 20373633 -222290720 + (TA)n Simple_repeat Simple_repeat 2 30 0 1695 171 10 55 chr1 20373810 20373981 -222290372 - AluJo SINE Alu -16 296 144 180 0 0 0 chr1 20373981 20374001 -222290352 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1695 171 10 55 chr1 20374001 20374139 -222290214 - AluJo SINE Alu -168 144 1 403 327 154 19 chr1 20374184 20374398 -222289955 - MIR SINE MIR -7 255 13 253 259 83 46 chr1 20377170 20377278 -222287075 + MIR SINE MIR 10 122 -86 2391 83 0 3 chr1 20378618 20378918 -222285435 - AluSc SINE Alu -10 299 1 1478 105 52 0 chr1 20379680 20379890 -222284463 - AluSg/x SINE Alu -4 308 88 2322 104 0 13 chr1 20379969 20380285 -222284068 - AluSx SINE Alu 0 312 1 475 225 169 0 chr1 20380698 20380858 -222283495 + MIR SINE MIR 2 188 -74 180 255 94 66 chr1 20380909 20381015 -222283338 - MIR SINE MIR -69 139 31 286 342 76 16 chr1 20381592 20381804 -222282549 - MIR SINE MIR -2 260 35 391 309 48 8 chr1 20383057 20383183 -222281170 - L2 LINE L2 -15 3257 3127 2253 97 13 3 chr1 20383764 20384072 -222280281 - AluSp SINE Alu -2 311 1 2470 90 0 0 chr1 20384099 20384399 -222279954 + AluSc SINE Alu 1 300 -9 266 313 12 0 chr1 20385900 20385980 -222278373 + MIR SINE MIR 31 111 -97 2130 138 0 0 chr1 20385994 20386291 -222278062 + AluJo SINE Alu 1 297 -15 315 0 0 0 chr1 20386292 20386327 -222278026 + (CA)n Simple_repeat Simple_repeat 1 35 0 424 308 101 6 chr1 20386690 20386849 -222277504 - MIR SINE MIR -87 175 2 2111 153 0 6 chr1 20387197 20387511 -222276842 - AluJb SINE Alu 0 312 1 1634 185 111 13 chr1 20387511 20387899 -222276454 - L1MC4 LINE L1 -879 7163 6734 312 27 0 0 chr1 20387949 20387986 -222276367 + (TG)n Simple_repeat Simple_repeat 1 37 0 310 177 65 0 chr1 20387993 20388055 -222276298 - L1MC4 LINE L1 -1481 6561 6496 943 0 0 0 chr1 20388304 20388408 -222275945 - L1PA3 LINE L1 -1 6154 6051 2291 120 0 0 chr1 20388408 20388709 -222275644 - AluSx SINE Alu -11 301 1 23 33 0 0 chr1 20388791 20388821 -222275532 + AT_rich Low_complexity Low_complexity 1 30 0 255 195 268 0 chr1 20388984 20389066 -222275287 + MIR3 SINE MIR 79 182 -26 250 304 199 12 chr1 20389600 20389771 -222274582 + L2 LINE L2 2602 2804 -510 864 238 22 30 chr1 20389806 20390037 -222274316 + MIR SINE MIR 8 236 -26 1102 252 52 14 chr1 20390062 20390352 -222274001 + L2 LINE L2 2657 2957 -357 2286 117 3 0 chr1 20390359 20390668 -222273685 - AluY SINE Alu -1 310 1 2360 113 0 0 chr1 20390752 20391054 -222273299 - AluSx SINE Alu -7 305 4 211 232 24 136 chr1 20391094 20391151 -222273202 + L2 LINE L2 2989 3027 -245 1821 108 56 70 chr1 20391151 20391342 -222273011 - AluSx SINE Alu 0 309 122 261 0 0 0 chr1 20391342 20391371 -222272982 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1821 108 56 70 chr1 20391371 20391492 -222272861 - AluSx SINE Alu -187 122 1 211 232 24 136 chr1 20391492 20391558 -222272795 + L2 LINE L2 3027 3099 -173 2272 93 10 0 chr1 20392315 20392606 -222271747 + AluSq SINE Alu 1 294 -19 2583 74 7 0 chr1 20392757 20393066 -222271287 + AluSq SINE Alu 1 311 -2 2619 62 0 0 chr1 20393066 20393373 -222270980 + AluY SINE Alu 1 307 -4 1958 151 0 32 chr1 20393719 20394056 -222270297 - AluJo SINE Alu 0 312 1 245 246 197 66 chr1 20394298 20394401 -222269952 + MIR SINE MIR 26 102 -106 2080 142 0 0 chr1 20394401 20394697 -222269656 + AluSx SINE Alu 1 296 -16 245 246 197 66 chr1 20394697 20394715 -222269638 + MIR SINE MIR 102 116 -92 * 471 301 80 5 chr1 20394703 20394916 -222269437 - MIR SINE MIR -1 261 33 257 260 0 14 chr1 20394964 20395037 -222269316 - MIR SINE MIR -14 248 177 1905 108 115 7 chr1 20395157 20395436 -222268917 - AluSg1 SINE Alu 0 309 1 21 36 0 0 chr1 20395441 20395469 -222268884 + AT_rich Low_complexity Low_complexity 1 28 0 2167 127 0 0 chr1 20395474 20395765 -222268588 - AluSx SINE Alu -21 291 1 523 261 25 8 chr1 20395870 20395989 -222268364 + L2 LINE L2 3193 3313 0 321 266 28 0 chr1 20395997 20396096 -222268257 - MIR SINE MIR -65 143 79 615 307 70 19 chr1 20396760 20396975 -222267378 + MIR SINE MIR 9 234 -28 241 204 0 12 chr1 20397423 20397483 -222266870 + MIR SINE MIR 77 135 -73 634 119 0 0 chr1 20397556 20397640 -222266713 - AluJo/FRAM SINE Alu -47 265 182 2296 89 0 17 chr1 20397642 20397977 -222266376 - AluSx SINE Alu 0 312 2 250 279 221 10 chr1 20397982 20398086 -222266267 + MIR SINE MIR 136 261 -1 2072 113 25 0 chr1 20398157 20398475 -222265878 + AluSq SINE Alu 2 326 0 214 298 228 9 chr1 20398475 20398589 -222265764 - L2 LINE L2 -5 3267 3129 28 71 0 0 chr1 20399804 20399860 -222264493 + GC_rich Low_complexity Low_complexity 1 56 0 33 107 0 0 chr1 20399980 20400111 -222264242 + GC_rich Low_complexity Low_complexity 1 131 0 22 80 0 0 chr1 20400233 20400283 -222264070 + GC_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr1 20400495 20400530 -222263823 + GC_rich Low_complexity Low_complexity 1 35 0 200 241 46 11 chr1 20400686 20400773 -222263580 + (TCTCTG)n Simple_repeat Simple_repeat 2 91 0 180 217 313 35 chr1 20401968 20402083 -222262270 - MIR3 SINE MIR -26 182 36 595 249 96 20 chr1 20402723 20402881 -222261472 - MIR SINE MIR -11 251 74 1463 185 70 7 chr1 20402881 20403151 -222261202 + AluJo SINE Alu 25 311 -1 595 249 96 20 chr1 20403151 20403189 -222261164 - MIR SINE MIR -188 74 40 387 105 0 0 chr1 20403547 20403604 -222260749 + (TG)n Simple_repeat Simple_repeat 1 57 0 585 273 56 0 chr1 20404847 20404990 -222259363 + MIR SINE MIR 48 198 -64 300 184 0 126 chr1 20405007 20405044 -222259309 + MER7A DNA MER2_type 31 52 -2986 2325 85 3 0 chr1 20405044 20405354 -222258999 - AluSx SINE Alu 0 311 1 300 184 0 126 chr1 20405354 20405402 -222258951 + MER7A DNA MER2_type 52 104 -242 1583 186 4 0 chr1 20405409 20405657 -222258696 - AluJo SINE Alu -63 249 1 944 28 0 0 chr1 20405666 20405795 -222258558 - AluY SINE Alu 0 304 176 938 169 141 0 chr1 20405798 20405982 -222258371 + MER7A DNA MER2_type 126 335 -1 313 316 95 25 chr1 20406761 20406919 -222257434 - MIR SINE MIR -71 191 23 309 68 0 0 chr1 20407333 20407377 -222256976 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 1300 181 28 87 chr1 20407392 20407596 -222256757 - AluJo SINE Alu -10 302 122 234 0 0 0 chr1 20407596 20407622 -222256731 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1300 181 28 87 chr1 20407622 20407738 -222256615 - AluJo SINE Alu -190 122 1 2326 100 0 0 chr1 20408401 20408690 -222255663 + AluSx SINE Alu 1 289 -23 2587 47 3 0 chr1 20408701 20409002 -222255351 + AluY SINE Alu 1 302 -9 197 281 31 47 chr1 20409241 20409305 -222255048 - MER5A DNA MER1_type -110 79 17 * 198 271 21 0 chr1 20409259 20409307 -222255046 + MER5A DNA MER1_type 141 189 0 1945 135 30 7 chr1 20409823 20410120 -222254233 + AluJb SINE Alu 1 304 -8 398 211 122 48 chr1 20410292 20410439 -222253914 - MIR SINE MIR -42 220 63 569 273 85 43 chr1 20410439 20410667 -222253686 - MIR SINE MIR -6 256 4 414 316 83 76 chr1 20411364 20411890 -222252463 + L2 LINE L2 2719 3249 -23 218 156 22 0 chr1 20411890 20411935 -222252418 + GA-rich Low_complexity Low_complexity 1 46 0 278 244 44 98 chr1 20411958 20412163 -222252190 - L2 LINE L2 -201 3112 2919 216 97 0 0 chr1 20412721 20412752 -222251601 + (CCCCCA)n Simple_repeat Simple_repeat 4 34 0 384 293 100 0 chr1 20414605 20414755 -222249598 - MIR SINE MIR -70 192 28 209 356 58 0 chr1 20414778 20414882 -222249471 - MIR SINE MIR -69 193 84 1755 139 87 7 chr1 20414998 20415286 -222249067 + AluJb SINE Alu 1 311 -1 279 250 47 0 chr1 20415286 20415350 -222249003 + polypurine Low_complexity Low_complexity 2 68 0 2398 75 0 0 chr1 20415777 20416084 -222248269 - AluSc SINE Alu -2 307 1 740 296 18 22 chr1 20416227 20416450 -222247903 + MIR SINE MIR 41 262 0 395 152 202 30 chr1 20416512 20416611 -222247742 - L2 LINE L2 0 3313 3198 2292 60 0 3 chr1 20416875 20417193 -222247160 - AluY SINE Alu 0 317 1 1730 167 7 10 chr1 20417286 20417586 -222246767 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr1 20417647 20417670 -222246683 + AT_rich Low_complexity Low_complexity 1 23 0 800 179 51 66 chr1 20417743 20417939 -222246414 - AluJo SINE Alu -5 307 115 264 244 47 23 chr1 20418086 20418172 -222246181 - MIR SINE MIR -147 115 28 2247 106 3 0 chr1 20418305 20418616 -222245737 - AluSq SINE Alu -1 312 1 423 306 33 30 chr1 20418659 20418836 -222245517 - MIR SINE MIR -69 139 16 358 244 22 67 chr1 20419056 20419191 -222245162 + MIR3 SINE MIR 34 162 -46 404 254 17 102 chr1 20419322 20419377 -222244976 + L2 LINE L2 3098 3156 -157 2353 77 6 6 chr1 20419377 20419688 -222244665 - AluSx SINE Alu -1 311 1 404 254 17 102 chr1 20419688 20419868 -222244485 + L2 LINE L2 3156 3313 0 308 227 2 29 chr1 20420170 20420246 -222244107 - MIR SINE MIR -63 145 79 28 0 0 0 chr1 20420635 20420663 -222243690 + GC_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr1 20421483 20421546 -222242807 + GC_rich Low_complexity Low_complexity 1 63 0 1021 297 205 27 chr1 20422286 20423096 -222241257 + L2 LINE L2 2251 3235 -78 1752 111 0 0 chr1 20423099 20423343 -222241010 - AluSg/x SINE Alu 0 310 67 516 147 0 73 chr1 20423935 20424044 -222240309 - FRAM SINE Alu -1 175 75 525 174 87 0 chr1 20424070 20424162 -222240191 - FRAM SINE Alu -57 119 20 606 181 164 0 chr1 20424293 20424409 -222239944 - FLAM_A SINE Alu -7 135 1 975 255 79 34 chr1 20424412 20424792 -222239561 + MER113 DNA MER1_type? 82 478 -43 588 250 122 0 chr1 20425014 20425178 -222239175 - MIR SINE MIR -8 254 71 480 280 152 5 chr1 20425245 20425456 -222238897 + L2 LINE L2 1994 2235 -1079 1309 80 0 0 chr1 20425468 20425631 -222238722 - AluSx SINE Alu -149 163 1 1031 320 59 29 chr1 20425746 20426150 -222238203 + L2 LINE L2 2806 3229 -84 2003 142 7 3 chr1 20426150 20426459 -222237894 - AluSx SINE Alu -2 310 1 1031 320 59 29 chr1 20426459 20426544 -222237809 + L2 LINE L2 3229 3310 -3 330 308 77 8 chr1 20426664 20426794 -222237559 - L2 LINE L2 0 3272 3134 246 369 0 13 chr1 20427876 20428045 -222236308 + CT-rich Low_complexity Low_complexity 1 166 0 501 321 160 9 chr1 20428225 20428450 -222235903 + MIR SINE MIR 3 257 -5 1193 161 5 19 chr1 20428451 20428656 -222235697 + AluJo SINE Alu 9 210 -102 1023 239 40 0 chr1 20428844 20429091 -222235262 - MIR SINE MIR 0 262 6 2073 80 40 0 chr1 20429122 20429420 -222234933 + AluSp SINE Alu 1 309 0 2107 142 0 3 chr1 20429554 20429863 -222234490 - AluJb SINE Alu -4 308 1 504 256 77 53 chr1 20429941 20430095 -222234258 - L1ME4a LINE L1 -188 5933 5769 2175 128 3 0 chr1 20430095 20430401 -222233952 - AluSx SINE Alu -5 307 1 504 256 77 53 chr1 20430401 20430492 -222233861 - L1ME4a LINE L1 -352 5769 5682 562 282 144 6 chr1 20430864 20431045 -222233308 + MIR SINE MIR 56 261 -1 208 196 4 122 chr1 20431063 20431158 -222233195 + MIR SINE MIR 47 135 -73 485 308 154 18 chr1 20431853 20432080 -222232273 - MIR SINE MIR -4 258 1 216 0 0 0 chr1 20432914 20432938 -222231415 + (TG)n Simple_repeat Simple_repeat 1 24 0 2112 106 0 3 chr1 20433451 20433735 -222230618 - AluSx SINE Alu -29 283 1 324 390 0 0 chr1 20434035 20434212 -222230141 + (CTAGGG)n Simple_repeat Simple_repeat 1 177 0 436 240 182 19 chr1 20435459 20435613 -222228740 + MER5A DNA MER1_type 4 182 -7 514 343 50 6 chr1 20435712 20435893 -222228460 + MIR SINE MIR 30 218 -44 354 320 40 0 chr1 20436733 20436858 -222227495 + MIR3 SINE MIR 30 159 -49 2121 116 7 3 chr1 20436916 20437217 -222227136 + AluSx SINE Alu 1 302 -10 1572 114 87 24 chr1 20437217 20437469 -222226884 - AluJo SINE Alu -30 282 13 187 296 0 0 chr1 20437587 20437631 -222226722 + MIR SINE MIR 104 147 -61 745 306 53 33 chr1 20437704 20437949 -222226404 + MIR SINE MIR 13 262 0 308 256 124 16 chr1 20438070 20438191 -222226162 + MER91C DNA MER1_type 7 140 0 2133 96 33 3 chr1 20439454 20439756 -222224597 - AluSx SINE Alu 0 312 2 225 0 0 0 chr1 20439759 20439784 -222224569 + (T)n Simple_repeat Simple_repeat 1 25 0 1602 167 25 0 chr1 20439846 20440121 -222224232 - AluJo SINE Alu -30 282 1 417 259 0 61 chr1 20440151 20440282 -222224071 + MIR SINE MIR 63 185 -77 1067 273 99 5 chr1 20440320 20440734 -222223619 + MLT1J LTR MaLR 5 457 -54 2033 143 0 3 chr1 20440738 20441045 -222223308 + AluJb SINE Alu 1 306 -6 189 206 0 0 chr1 20441223 20441257 -222223096 + L2 LINE L2 3261 3294 -19 512 200 0 75 chr1 20441314 20441402 -222222951 - MIR SINE MIR -132 130 52 2289 78 0 44 chr1 20441402 20441722 -222222631 - AluY SINE Alu -5 306 1 512 200 0 75 chr1 20441722 20441753 -222222600 - MIR SINE MIR -210 52 20 298 310 83 30 chr1 20441752 20441916 -222222437 - MIR3 SINE MIR -11 197 22 * 336 293 66 48 chr1 20442390 20442557 -222221796 + MIR3 SINE MIR 2 171 -37 2175 125 0 3 chr1 20442635 20442948 -222221405 - AluSx SINE Alu 0 312 1 731 194 0 15 chr1 20442948 20443082 -222221271 - AluJo/FLAM SINE Alu -180 132 1 241 281 125 10 chr1 20443118 20443214 -222221139 + MIR SINE MIR 150 256 -6 382 179 0 0 chr1 20443271 20443338 -222221015 - MLT1J LTR MaLR -198 313 247 207 331 105 41 chr1 20443828 20444000 -222220353 + L2 LINE L2 3040 3222 -50 390 246 127 14 chr1 20444155 20444297 -222220056 + MIR SINE MIR 89 246 -16 240 284 239 0 chr1 20444347 20444481 -222219872 + MIR SINE MIR 43 208 -54 694 146 7 49 chr1 20445201 20445345 -222219008 - MIR SINE MIR -119 143 6 754 188 6 29 chr1 20445561 20445731 -222218622 + LTR28 LTR ERV1 1 166 -854 * 1573 199 9 18 chr1 20445729 20446340 -222218013 + LTR28 LTR ERV1 300 1015 -5 238 202 53 85 chr1 20446464 20446558 -222217795 + MIR SINE MIR 117 207 -55 2384 86 0 0 chr1 20446560 20446863 -222217490 - AluY SINE Alu -8 303 1 2197 123 45 31 chr1 20447442 20447801 -222216552 + THE1B LTR MaLR 1 364 0 374 232 126 0 chr1 20448027 20448122 -222216231 + MIR SINE MIR 47 153 -109 2079 95 0 56 chr1 20448143 20448472 -222215881 + AluSq SINE Alu 1 312 0 2015 138 26 3 chr1 20448585 20448890 -222215463 + AluJb SINE Alu 1 312 0 2112 124 16 0 chr1 20448896 20449203 -222215150 + AluSx SINE Alu 1 312 0 303 252 95 54 chr1 20449294 20449441 -222214912 - MER5A DNA MER1_type -8 177 18 1825 173 0 0 chr1 20449702 20449997 -222214356 - AluJb SINE Alu -17 295 1 612 125 0 0 chr1 20500228 20500324 -222164029 + (TTTTC)n Simple_repeat Simple_repeat 5 100 0 198 263 0 0 chr1 20500312 20500369 -222163984 + C-rich Low_complexity Low_complexity 6 62 0 * 2245 106 23 0 chr1 20500371 20500672 -222163681 - AluSg SINE Alu -2 308 1 181 289 208 17 chr1 20500673 20500846 -222163507 + L2 LINE L2 2748 2953 -361 456 289 116 0 chr1 20501211 20501384 -222162969 - L2 LINE L2 -5 3308 3116 2489 92 0 0 chr1 20501388 20501694 -222162659 + AluSc SINE Alu 1 306 -3 458 307 104 10 chr1 20501971 20502163 -222162190 + MIR SINE MIR 7 216 -46 398 309 97 12 chr1 20502621 20502786 -222161567 + MIR SINE MIR 68 246 -16 21 36 0 0 chr1 20502791 20502819 -222161534 + AT_rich Low_complexity Low_complexity 1 28 0 2396 92 3 13 chr1 20502819 20503135 -222161218 - AluSq SINE Alu 0 313 1 3082 144 29 20 chr1 20503158 20503719 -222160634 - L1MB2 LINE L1 -7 6164 5599 699 269 89 14 chr1 20504068 20504529 -222159824 - L2 LINE L2 -257 3056 2549 2113 148 3 0 chr1 20505255 20505559 -222158794 + AluSx SINE Alu 1 305 -7 190 137 216 20 chr1 20505801 20505852 -222158501 - L2 LINE L2 -6 3307 3247 2233 136 58 3 chr1 20506137 20506482 -222157871 - THE1B LTR MaLR 0 364 1 33 0 0 0 chr1 20506978 20507011 -222157342 + AT_rich Low_complexity Low_complexity 1 33 0 233 272 244 64 chr1 20507122 20507351 -222157002 + L2 LINE L2 2850 3036 -277 1926 122 73 7 chr1 20507351 20507637 -222156716 + AluSg SINE Alu 2 306 -4 233 272 244 64 chr1 20507637 20507800 -222156553 + L2 LINE L2 3036 3313 0 228 222 56 0 chr1 20508246 20508300 -222156053 - MIR SINE MIR -50 212 156 278 297 135 20 chr1 20508461 20508609 -222155744 + MIR SINE MIR 19 183 -79 334 305 8 31 chr1 20508613 20508741 -222155612 - L2 LINE L2 -4 3309 3185 2434 79 0 3 chr1 20508743 20509048 -222155305 + AluSx SINE Alu 7 310 -2 23 0 0 0 chr1 20509658 20509681 -222154672 + GC_rich Low_complexity Low_complexity 1 23 0 220 147 0 29 chr1 20509732 20509800 -222154553 + (CGGGG)n Simple_repeat Simple_repeat 2 67 0 2827 92 29 0 chr1 20510152 20510311 -222154042 - HUERS-P1 LTR ERV1 -3890 2373 2220 2329 105 3 16 chr1 20510311 20510626 -222153727 + AluSp SINE Alu 1 311 -2 2827 92 29 0 chr1 20510626 20510878 -222153475 - HUERS-P1 LTR ERV1 -4043 2220 1950 * 4161 157 72 25 chr1 20510862 20511472 -222152881 - HUERS-P1 LTR ERV1 -4171 1775 1195 186 71 0 0 chr1 20511472 20511500 -222152853 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 4161 157 72 25 chr1 20511500 20512444 -222151909 - HUERS-P1 LTR ERV1 -4751 1195 60 5255 85 21 6 chr1 20512545 20513615 -222150738 - L1PA10 LINE L1 -187 5981 4894 1991 132 0 10 chr1 20513615 20513919 -222150434 - AluJb SINE Alu -11 301 1 5255 85 21 6 chr1 20513919 20513933 -222150420 - L1PA10 LINE L1 -1274 4894 4882 835 330 27 33 chr1 20514079 20514259 -222150094 - L1PA14 LINE L1 -1 6120 5941 1734 145 0 24 chr1 20514259 20514570 -222149783 - AluSx SINE Alu 0 304 1 835 330 27 33 chr1 20514570 20514585 -222149768 - L1PA14 LINE L1 -180 5941 5927 1610 75 0 0 chr1 20514585 20514797 -222149556 - AluY SINE Alu 0 311 100 835 330 27 33 chr1 20514797 20515006 -222149347 - L1PA14 LINE L1 -194 5927 5717 535 219 180 22 chr1 20515050 20515233 -222149120 - L2 LINE L2 -504 2810 2599 198 97 32 0 chr1 20515239 20515270 -222149083 - L2 LINE L2 -18 3295 3264 351 291 8 45 chr1 20515282 20515416 -222148937 + MER5A DNA MER1_type 60 188 -1 677 236 79 2 chr1 20515495 20515681 -222148672 - MIR SINE MIR -45 217 23 2084 126 0 0 chr1 20516232 20516533 -222147820 - AluSx SINE Alu -11 301 1 867 213 121 36 chr1 20516662 20516967 -222147386 - MER113 DNA MER1_type? -3 518 188 840 160 94 90 chr1 20516967 20517211 -222147142 - L1MD3 LINE L1 -22 7973 7729 1842 145 3 7 chr1 20517215 20517512 -222146841 - AluJb SINE Alu -16 296 1 236 351 106 10 chr1 20517536 20517744 -222146609 - L2 LINE L2 -454 2860 2633 2038 96 50 0 chr1 20517849 20518131 -222146222 + AluSc SINE Alu 1 296 -13 348 249 92 116 chr1 20518198 20518325 -222146028 - L1ME3A LINE L1 -1 6161 6043 1528 181 10 24 chr1 20518325 20518617 -222145736 + AluJo SINE Alu 7 294 -18 348 249 92 116 chr1 20518617 20518740 -222145613 - L1ME3A LINE L1 -119 6043 5919 189 319 102 69 chr1 20518853 20519017 -222145336 - MIR SINE MIR -20 242 68 2011 131 0 22 chr1 20519017 20519331 -222145022 - AluSx SINE Alu -5 307 1 189 319 102 69 chr1 20519331 20519382 -222144971 - MIR SINE MIR -194 68 20 321 229 48 185 chr1 20519458 20519750 -222144603 + MIR SINE MIR 9 260 -2 277 278 23 23 chr1 20520208 20520341 -222144012 - LTR67 LTR ERVL 0 557 425 1671 103 0 0 chr1 20520469 20520683 -222143670 + Charlie3 DNA MER1_type 50 263 -2447 255 236 0 0 chr1 20520731 20520786 -222143567 + L2 LINE L2 3218 3272 0 2179 108 0 6 chr1 20520815 20521129 -222143224 - AluSx SINE Alu 0 312 1 657 306 102 0 chr1 20521660 20521895 -222142458 + MIR SINE MIR 4 262 0 393 267 168 12 chr1 20522046 20522207 -222142146 - MIR SINE MIR -46 216 31 299 245 102 0 chr1 20522514 20522612 -222141741 - MIR SINE MIR -119 143 36 2092 127 0 13 chr1 20523086 20523402 -222140951 - AluSx SINE Alu 0 312 1 689 261 66 46 chr1 20523578 20523805 -222140548 + MIR SINE MIR 18 248 -14 494 69 46 35 chr1 20526471 20526558 -222137795 - Alu SINE Alu -2 307 220 659 121 0 10 chr1 20527649 20527748 -222136605 + MER4A LTR ERV1 1 98 -566 1691 120 17 80 chr1 20527748 20528105 -222136248 + MER4A LTR ERV1 261 653 -11 1252 308 70 34 chr1 20528174 20528732 -222135621 + MLT1K LTR MaLR 11 588 0 1661 124 94 8 chr1 20529032 20529299 -222135054 - AluSx SINE Alu -22 290 1 374 236 0 45 chr1 20529627 20529737 -222134616 + MIR SINE MIR 39 143 -119 1745 144 4 0 chr1 20529738 20530016 -222134337 + AluJb SINE Alu 1 279 -33 200 86 29 0 chr1 20530019 20530054 -222134299 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr1 20530989 20531011 -222133342 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 292 239 54 22 chr1 20531218 20531310 -222133043 + MIR SINE MIR 49 143 -65 1971 124 0 13 chr1 20531423 20531729 -222132624 - AluSq SINE Alu -11 302 1 563 275 70 64 chr1 20531769 20531903 -222132450 - L1ME4a LINE L1 -15 6106 5974 2244 102 0 3 chr1 20531903 20532216 -222132137 - AluSq SINE Alu -1 312 1 563 275 70 64 chr1 20532216 20532521 -222131832 - L1ME4a LINE L1 -147 5974 5664 2005 150 3 0 chr1 20532970 20533276 -222131077 + AluSx SINE Alu 3 309 -3 929 125 0 22 chr1 20533597 20533733 -222130620 + FLAM_C SINE Alu 1 133 0 28 22 0 22 chr1 20533736 20533756 -222130597 + AT_rich Low_complexity Low_complexity 1 20 -25 2129 102 0 3 chr1 20533756 20534050 -222130303 + AluSq SINE Alu 2 294 -19 28 22 0 22 chr1 20534050 20534075 -222130278 + AT_rich Low_complexity Low_complexity 20 45 0 647 203 0 0 chr1 20534222 20534340 -222130013 + FRAM SINE Alu 48 165 -11 927 52 0 0 chr1 20534521 20534636 -222129717 - L1PA8 LINE L1 0 6172 6058 436 266 7 0 chr1 20534643 20534782 -222129571 - L1MC4a LINE L1 -1983 5825 5686 1291 140 0 18 chr1 20535195 20535424 -222128929 + AluJb SINE Alu 80 304 -8 314 283 89 45 chr1 20535427 20535645 -222128708 + LTR43 LTR ERV1 221 366 -146 4289 98 29 0 chr1 20535645 20536240 -222128113 - LTR9 LTR ERV1 0 612 1 314 283 89 45 chr1 20536240 20536333 -222128020 + LTR43 LTR ERV1 366 453 -59 690 152 19 0 chr1 20536419 20536524 -222127829 - LTR9 LTR ERV1 0 612 506 1693 127 0 78 chr1 20536587 20536925 -222127428 + AluSx SINE Alu 1 314 0 335 260 22 8 chr1 20536934 20537042 -222127311 - L1MC4a LINE L1 -541 5580 5487 1701 151 3 14 chr1 20537140 20537424 -222126929 - AluJo SINE Alu -25 287 7 1153 83 0 0 chr1 20537643 20537800 -222126553 - AluSq SINE Alu -1 312 156 590 94 12 0 chr1 20537800 20537885 -222126468 - AluSq SINE Alu -226 87 2 4532 110 14 30 chr1 20538130 20538832 -222125521 + L1PA16 LINE L1 5408 6098 -68 784 110 0 63 chr1 20538832 20538959 -222125394 - AluSq/x SINE Alu -193 120 2 186 71 0 0 chr1 20538963 20538991 -222125362 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 1026 177 38 38 chr1 20539123 20539360 -222124993 - L1M3 LINE L1 -566 5605 5369 * 4928 153 24 36 chr1 20539349 20540038 -222124315 - L1MC1 LINE L1 -320 6013 5318 2103 100 0 7 chr1 20540038 20540351 -222124002 - AluSx SINE Alu 0 311 1 4928 153 24 36 chr1 20540351 20540526 -222123827 - L1MC1 LINE L1 -1015 5318 5142 2305 99 0 0 chr1 20540526 20540838 -222123515 - AluSx SINE Alu 0 312 1 4928 153 24 36 chr1 20540838 20541039 -222123314 - L1MC1 LINE L1 -1191 5142 4946 1506 203 14 3 chr1 20541039 20541330 -222123023 + L2 LINE L2 2392 2685 -629 7779 210 8 31 chr1 20541351 20542622 -222121731 + L1M4 LINE L1 14 1236 -5306 2187 92 0 10 chr1 20542622 20542928 -222121425 + AluY SINE Alu 1 303 -8 7779 210 8 31 chr1 20542928 20543385 -222120968 + L1M4 LINE L1 1236 1702 -4840 972 183 61 19 chr1 20543635 20543850 -222120503 - MIR SINE MIR -21 241 20 558 284 147 0 chr1 20544065 20544290 -222120063 - MIR SINE MIR -3 259 2 587 228 44 13 chr1 20544349 20544507 -222119846 - MIR SINE MIR -12 250 88 1449 254 17 3 chr1 20544512 20544874 -222119479 + LTR16A LTR ERVL 22 388 -62 2112 112 7 3 chr1 20544941 20545244 -222119109 - AluSx SINE Alu -8 304 1 311 254 73 85 chr1 20545576 20545753 -222118600 + L1ME4a LINE L1 5947 6121 0 595 212 69 1 chr1 20545769 20545922 -222118431 - MER63 DNA MER1_type -22 1666 28 2133 94 13 13 chr1 20545981 20546279 -222118074 + AluSq SINE Alu 1 298 -15 263 122 0 0 chr1 20546279 20546328 -222118025 + L1MB4 LINE L1 6132 6180 0 2131 123 0 0 chr1 20546360 20546662 -222117691 + AluSx SINE Alu 1 302 -10 276 189 4 0 chr1 20546878 20546932 -222117421 - L1ME2 LINE L1 0 6162 6107 663 191 254 10 chr1 20546932 20547141 -222117212 + L2 LINE L2 1817 2076 -1238 * 2322 279 134 20 chr1 20547139 20547286 -222117067 - L2 LINE L2 -1959 1355 1226 1305 201 28 18 chr1 20547286 20547569 -222116784 + AluJo SINE Alu 1 286 -26 2322 279 134 20 chr1 20547569 20548092 -222116261 - L2 LINE L2 -2088 1226 764 1779 141 3 30 chr1 20548092 20548390 -222115963 + AluSx SINE Alu 3 292 -20 2322 279 134 20 chr1 20548390 20548826 -222115527 - L2 LINE L2 -2550 764 121 358 306 69 14 chr1 20549096 20549240 -222115113 - MIR SINE MIR -12 250 99 397 215 0 74 chr1 20549345 20549466 -222114887 + MLT1K LTR MaLR 470 581 -7 2280 107 0 0 chr1 20550053 20550361 -222113992 - AluSg SINE Alu -2 308 1 818 155 16 0 chr1 20550361 20550490 -222113863 - AluJo/FLAM SINE Alu -171 131 1 220 206 59 78 chr1 20550682 20550784 -222113569 + MIR SINE MIR 162 261 -1 286 288 85 39 chr1 20550833 20550986 -222113367 + MIR SINE MIR 2 161 -101 249 320 48 32 chr1 20551234 20551359 -222112994 + L1MEd LINE L1 527 653 -5466 1371 119 0 0 chr1 20551441 20551635 -222112718 + AluSg SINE Alu 17 210 -100 413 103 0 0 chr1 20551635 20551693 -222112660 + AluSg/x SINE Alu 76 133 -177 1900 141 0 3 chr1 20551693 20551984 -222112369 + AluSx SINE Alu 1 290 -22 326 301 61 61 chr1 20551992 20552454 -222111899 + L1MEd LINE L1 730 1191 -4928 2331 77 3 0 chr1 20552464 20552762 -222111591 + AluSp SINE Alu 1 299 -14 2068 111 0 0 chr1 20553088 20553385 -222110968 - AluSg SINE Alu -13 297 1 435 207 86 17 chr1 20553414 20553530 -222110823 + L2 LINE L2 3148 3271 -1 372 188 40 89 chr1 20553529 20553630 -222110723 + MIR SINE MIR 97 192 -70 * 242 259 0 0 chr1 20553674 20553728 -222110625 + MIR SINE MIR 101 154 -108 577 228 44 38 chr1 20554425 20554583 -222109770 - MLT1J2 LTR MaLR 0 450 292 410 268 18 9 chr1 20554577 20554689 -222109664 - MLT1J1 LTR MaLR -281 165 53 * 569 254 116 12 chr1 20554765 20554938 -222109415 - MIR SINE MIR -61 201 11 741 293 54 20 chr1 20555039 20555336 -222109017 + L2 LINE L2 3005 3311 -2 180 0 0 0 chr1 20555426 20555446 -222108907 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 184 271 0 0 chr1 20555513 20555561 -222108792 - L2 LINE L2 -209 3063 3016 238 344 45 40 chr1 20556302 20556677 -222107676 - L1ME4a LINE L1 -20 6101 5725 1818 159 0 0 chr1 20556757 20557046 -222107307 - AluSx SINE Alu -23 289 1 2099 136 0 0 chr1 20557557 20557865 -222106488 - AluSx SINE Alu -2 310 3 549 265 36 18 chr1 20558119 20558285 -222106068 - MIR SINE MIR -85 177 9 1756 161 6 16 chr1 20558509 20558820 -222105533 + AluJo SINE Alu 1 308 -4 2228 94 3 0 chr1 20559318 20559615 -222104738 + AluSx SINE Alu 1 298 -14 2190 98 3 3 chr1 20559958 20560263 -222104090 + AluSg SINE Alu 1 305 -5 340 224 104 57 chr1 20560289 20560369 -222103984 + L1ME4a LINE L1 5902 5977 -144 561 113 0 0 chr1 20560369 20560449 -222103904 - MER116 DNA Mariner 0 80 1 340 224 104 57 chr1 20560449 20560560 -222103793 + L1ME4a LINE L1 5977 6102 -19 2150 113 0 0 chr1 20560561 20560870 -222103483 - AluSx SINE Alu -3 309 1 470 274 92 26 chr1 20560983 20561136 -222103217 + MIR3 SINE MIR 35 197 -11 333 89 10 0 chr1 20561426 20561481 -222102872 - Alu SINE Alu -258 42 1 453 273 91 32 chr1 20561581 20561735 -222102618 + MIR3 SINE MIR 35 197 -11 669 110 0 0 chr1 20562222 20562322 -222102031 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 1945 115 7 3 chr1 20562324 20562612 -222101741 - AluSg1 SINE Alu -20 289 1 258 320 131 48 chr1 20562812 20563018 -222101335 - MIR SINE MIR -21 241 19 2032 140 0 10 chr1 20563184 20563499 -222100854 + AluSx SINE Alu 1 299 -13 753 93 0 0 chr1 20563560 20563667 -222100686 + (CCA)n Simple_repeat Simple_repeat 1 107 0 2380 125 27 29 chr1 20563772 20564148 -222100205 + THE1C LTR MaLR 1 375 0 1896 157 0 27 chr1 20564213 20564513 -222099840 + AluJb SINE Alu 1 292 -20 2247 105 0 0 chr1 20564521 20564815 -222099538 + AluY SINE Alu 1 294 -17 474 315 94 5 chr1 20566068 20566281 -222098072 - MIR SINE MIR -10 252 21 2129 70 0 0 chr1 20566493 20566763 -222097590 - MER41A LTR ERV1 -1 553 284 444 130 0 39 chr1 20566767 20566844 -222097509 + Alu SINE Alu 238 311 -1 5049 75 30 3 chr1 20566845 20567511 -222096842 - HUERS-P1 LTR ERV1 -3068 3195 2512 2456 233 32 15 chr1 20567650 20567691 -222096662 + L1MEc LINE L1 2109 2148 -4067 2147 102 0 3 chr1 20567691 20568009 -222096344 + AluSx SINE Alu 2 318 0 2456 233 32 15 chr1 20568009 20568712 -222095641 + L1MEc LINE L1 2148 2816 -3399 1270 211 29 36 chr1 20568713 20568822 -222095531 + AluJo SINE Alu 32 140 -189 2440 84 3 0 chr1 20568822 20569121 -222095232 + AluSq SINE Alu 1 300 -13 1270 211 29 36 chr1 20569121 20569311 -222095042 + AluJo SINE Alu 140 329 0 2272 92 14 0 chr1 20569311 20569605 -222094748 + AluSp SINE Alu 2 299 -14 4951 216 14 52 chr1 20569609 20570838 -222093515 + L1MEc LINE L1 2820 3991 -2224 757 220 0 0 chr1 20570838 20570970 -222093383 + FLAM_A SINE Alu 1 132 -1 4951 216 14 52 chr1 20570970 20571146 -222093207 + L1MEc LINE L1 3991 4172 -2043 383 69 35 0 chr1 20571149 20571207 -222093146 + (TTCC)n Simple_repeat Simple_repeat 4 63 0 2072 120 29 19 chr1 20571207 20571516 -222092837 - AluSx SINE Alu 0 312 1 262 207 126 0 chr1 20571517 20571604 -222092749 + L1MEc LINE L1 4163 4260 -1955 1147 215 32 47 chr1 20571628 20571972 -222092381 + L1MEc LINE L1 4215 4553 -1662 4896 163 45 24 chr1 20572073 20572171 -222092182 + L1MB7 LINE L1 5132 5226 -1027 1746 164 7 20 chr1 20572171 20572475 -222091878 + AluJb SINE Alu 5 304 -8 4896 163 45 24 chr1 20572475 20573455 -222090898 + L1MB7 LINE L1 5226 6234 -19 1477 217 176 56 chr1 20573460 20573726 -222090627 + L1MC4 LINE L1 6491 6724 -1318 2006 131 0 3 chr1 20573726 20574044 -222090309 + AluSx SINE Alu 1 317 0 1477 217 176 56 chr1 20574044 20574311 -222090042 + L1MC4 LINE L1 6724 7089 -953 2202 100 10 0 chr1 20574327 20574616 -222089737 + AluSq SINE Alu 1 292 -21 2304 224 60 39 chr1 20574630 20574792 -222089561 + L1MC4 LINE L1 7250 7407 -635 2100 86 57 0 chr1 20574792 20575071 -222089282 + AluSg SINE Alu 1 295 -15 2304 224 60 39 chr1 20575071 20575556 -222088797 + L1MC4 LINE L1 7407 7911 -131 889 182 14 0 chr1 20575588 20575736 -222088617 - MER63 DNA MER1_type -55 781 6 847 171 0 0 chr1 20575801 20575930 -222088423 + FLAM_C SINE Alu 1 129 -14 2213 107 0 3 chr1 20576052 20576351 -222088002 - AluSx SINE Alu -14 298 1 258 243 81 40 chr1 20576651 20576725 -222087628 - L2 LINE L2 -34 3238 3162 2089 130 0 3 chr1 20576872 20577171 -222087182 - AluSx SINE Alu -14 298 1 201 306 0 0 chr1 20577248 20577297 -222087056 + L2 LINE L2 3214 3262 -10 2029 93 50 4 chr1 20577448 20577727 -222086626 + AluSg1 SINE Alu 1 292 -17 714 143 143 25 chr1 20577747 20577866 -222086487 + FLAM_C SINE Alu 1 133 0 450 36 0 0 chr1 20578291 20578347 -222086006 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 2051 139 0 0 chr1 20578756 20579051 -222085302 + AluSx SINE Alu 1 295 -17 474 315 94 5 chr1 20580303 20580516 -222083837 - MIR SINE MIR -10 252 21 2129 70 0 0 chr1 20580728 20580998 -222083355 - MER41A LTR ERV1 -1 553 284 444 130 0 39 chr1 20581002 20581079 -222083274 + Alu SINE Alu 238 311 -1 5202 86 28 6 chr1 20581080 20581798 -222082555 - HUERS-P1 LTR ERV1 -3068 3195 2462 2351 81 10 7 chr1 20581910 20582219 -222082134 - AluSq SINE Alu -2 311 2 2439 100 0 0 chr1 20582219 20582548 -222081805 - MER41A LTR ERV1 -225 329 1 243 242 32 0 chr1 20583057 20583119 -222081234 - MIR SINE MIR -67 141 78 2306 106 6 0 chr1 20583207 20583518 -222080835 - AluSq SINE Alu 0 313 1 411 143 0 0 chr1 20583602 20583665 -222080688 - MER53 DNA DNA 0 189 127 1766 160 0 17 chr1 20583788 20584112 -222080241 - AluJb SINE Alu 0 312 3 414 256 286 12 chr1 20584128 20584296 -222080057 + MIR SINE MIR 49 262 0 451 163 45 203 chr1 20584515 20584615 -222079738 - MER69A DNA AcHobo -2351 175 121 2305 101 3 7 chr1 20584615 20584923 -222079430 + AluSg SINE Alu 1 307 -3 451 163 45 203 chr1 20584923 20585024 -222079329 - MER69A DNA AcHobo -2405 121 6 860 259 40 100 chr1 20585035 20585553 -222078800 + MLT1J LTR MaLR 25 511 0 420 294 32 10 chr1 20585556 20585675 -222078678 + MIR SINE MIR 40 163 -45 35 41 0 0 chr1 20585675 20585724 -222078629 + AT_rich Low_complexity Low_complexity 1 49 0 239 340 32 51 chr1 20585737 20586091 -222078262 + L1ME4a LINE L1 4812 5156 -990 2092 133 0 3 chr1 20586091 20586385 -222077968 - AluSg SINE Alu -17 293 1 239 340 32 51 chr1 20586385 20586498 -222077855 + L1ME4a LINE L1 5156 5270 -876 1338 188 38 25 chr1 20586508 20586714 -222077639 + MER33 DNA MER1_type 1 203 -2382 252 0 0 0 chr1 20586714 20586742 -222077611 + (TA)n Simple_repeat Simple_repeat 2 29 0 1956 147 10 7 chr1 20586742 20587048 -222077305 - AluJb SINE Alu -5 307 1 1338 188 38 25 chr1 20587048 20587160 -222077193 + MER33 DNA MER1_type 202 324 0 542 315 36 13 chr1 20587161 20587463 -222076890 + L1ME4a LINE L1 5260 5568 -791 2155 132 0 0 chr1 20587599 20587902 -222076451 - AluSq SINE Alu -10 303 1 265 243 43 0 chr1 20587910 20587980 -222076373 + L1ME4a LINE L1 5582 5654 -2154 23 0 0 0 chr1 20588456 20588479 -222075874 + AT_rich Low_complexity Low_complexity 1 23 0 705 156 65 54 chr1 20588502 20588688 -222075665 + MER53 DNA DNA 2 189 0 566 240 47 13 chr1 20589035 20589211 -222075142 + MIR SINE MIR 6 184 -60 317 195 0 12 chr1 20589269 20589351 -222075002 + (TA)n Simple_repeat Simple_repeat 1 81 0 297 149 45 45 chr1 20589364 20589431 -222074922 + L1ME4a LINE L1 5944 6010 -111 2441 84 3 0 chr1 20589937 20590236 -222074117 + AluSp SINE Alu 1 300 -13 2244 114 0 7 chr1 20590247 20590555 -222073798 + AluSc SINE Alu 1 306 -3 504 223 106 43 chr1 20591457 20591645 -222072708 + MIR SINE MIR 63 262 0 899 211 38 19 chr1 20592276 20592489 -222071864 + MIR SINE MIR 14 230 -32 275 274 92 46 chr1 20592572 20592725 -222071628 + MIR SINE MIR 2 161 -101 254 320 48 32 chr1 20592973 20593098 -222071255 + L1MEd LINE L1 527 653 -5466 1438 119 0 0 chr1 20593180 20593374 -222070979 + AluSg SINE Alu 17 210 -100 438 103 0 0 chr1 20593374 20593432 -222070921 + AluSq/x SINE Alu 78 135 -178 2009 141 0 3 chr1 20593432 20593723 -222070630 + AluSx SINE Alu 1 290 -22 325 286 67 67 chr1 20593731 20594193 -222070160 + L1MEd LINE L1 730 1191 -4928 2092 96 0 27 chr1 20594203 20594518 -222069835 + AluSq SINE Alu 1 307 0 1126 233 51 91 chr1 20594646 20594924 -222069429 - MLT1J1 LTR MaLR -2 444 229 3696 78 13 0 chr1 20594924 20595388 -222068965 - L1PA13 LINE L1 -4 6159 5690 1126 233 51 91 chr1 20595388 20595568 -222068785 - MLT1J1 LTR MaLR -217 229 43 291 296 171 45 chr1 20595626 20595802 -222068551 + L2 LINE L2 3115 3312 -1 22 80 0 0 chr1 20595807 20595857 -222068496 + AT_rich Low_complexity Low_complexity 1 50 0 279 251 90 63 chr1 20595857 20596076 -222068277 - MLT1K LTR MaLR -12 603 369 2132 74 53 33 chr1 20596640 20596939 -222067414 - AluY SINE Alu -4 307 3 272 277 84 32 chr1 20597459 20597614 -222066739 - L2 LINE L2 -180 3092 2930 240 284 0 15 chr1 20597998 20598065 -222066288 + LTR67 LTR ERVL 490 555 -2 292 271 82 0 chr1 20598357 20598442 -222065911 + L2 LINE L2 3219 3310 -3 290 305 93 77 chr1 20598521 20599092 -222065261 + ERVL LTR ERVL 993 1572 -4192 1043 297 126 54 chr1 20599321 20599557 -222064796 - HAL1 LINE L1 -665 1842 1624 916 204 204 0 chr1 20599557 20599743 -222064610 + MER58A DNA MER1_type 1 224 0 1043 297 126 54 chr1 20599743 20600126 -222064227 - HAL1 LINE L1 -883 1624 1270 2323 83 0 13 chr1 20600126 20600428 -222063925 - AluY SINE Alu -13 298 1 1043 297 126 54 chr1 20600428 20600520 -222063833 - HAL1 LINE L1 -1237 1270 1186 2015 123 4 0 chr1 20600520 20600796 -222063557 - AluSq SINE Alu -3 310 34 1043 297 126 54 chr1 20600796 20601107 -222063246 - HAL1 LINE L1 -1321 1186 744 342 0 0 0 chr1 20601287 20601325 -222063028 + (TG)n Simple_repeat Simple_repeat 1 38 0 3111 84 65 7 chr1 20601400 20601776 -222062577 + MLT2A1 LTR ERVL 3 407 -37 354 80 0 0 chr1 20601776 20601826 -222062527 + (TA)n Simple_repeat Simple_repeat 2 51 0 3111 84 65 7 chr1 20601826 20601865 -222062488 + MLT2A1 LTR ERVL 407 442 -2 834 260 126 64 chr1 20601878 20602362 -222061991 + MLT1K LTR MaLR 71 584 -4 230 232 71 0 chr1 20603325 20603381 -222060972 - L2 LINE L2 -2 3311 3252 227 311 100 0 chr1 20605730 20605820 -222058533 - MIR SINE MIR -76 132 34 227 311 100 0 chr1 20607580 20607670 -222056683 - MIR SINE MIR -76 132 34 261 219 55 14 chr1 20608120 20608193 -222056160 - L2 LINE L2 0 3313 3238 346 195 133 44 chr1 20608410 20608523 -222055830 + MIR SINE MIR 119 241 -21 189 161 0 0 chr1 20608764 20608795 -222055558 - L2 LINE L2 -9 3304 3274 371 370 90 6 chr1 20608862 20609205 -222055148 - L2 LINE L2 -582 2732 2361 307 246 215 0 chr1 20609814 20609944 -222054409 + L2 LINE L2 3115 3272 0 288 302 174 49 chr1 20610049 20610599 -222053754 + L2 LINE L2 2420 3053 -219 1020 204 92 46 chr1 20610703 20611004 -222053349 - MER77 LTR ERV1 -7 598 307 186 43 0 0 chr1 20611006 20611029 -222053324 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 346 202 12 48 chr1 20611136 20611220 -222053133 - MER77 LTR ERV1 -471 134 54 196 100 33 0 chr1 20611291 20611321 -222053032 + L2 LINE L2 3144 3174 -98 481 293 192 5 chr1 20611330 20611528 -222052825 + MIR SINE MIR 13 247 -15 272 200 18 127 chr1 20612365 20612530 -222051823 - L1ME4a LINE L1 -3 6118 5972 876 204 82 41 chr1 20612753 20613022 -222051331 - L1ME1 LINE L1 -5 6161 5882 28 0 0 0 chr1 20613844 20613872 -222050481 + AT_rich Low_complexity Low_complexity 1 28 0 612 173 62 78 chr1 20614496 20614675 -222049678 + MER69A DNA AcHobo 2 177 0 295 154 0 187 chr1 20614683 20614774 -222049579 - MER69A DNA AcHobo -103 74 1 22 0 0 0 chr1 20615264 20615286 -222049067 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1 20615382 20615416 -222048937 + AT_rich Low_complexity Low_complexity 1 34 0 2367 70 7 7 chr1 20615423 20615723 -222048630 - AluSp SINE Alu -13 300 1 2394 84 3 0 chr1 20615922 20616220 -222048133 + AluSp SINE Alu 1 299 -14 327 308 279 6 chr1 20616593 20616941 -222047412 + L3 LINE CR1 931 1373 -204 1122 198 73 42 chr1 20617032 20617166 -222047187 + MER33 DNA MER1_type 2 130 -2455 2281 99 6 10 chr1 20617166 20617479 -222046874 + AluSp SINE Alu 1 312 -1 1122 198 73 42 chr1 20617479 20617657 -222046696 + MER33 DNA MER1_type 130 324 0 895 153 15 56 chr1 20617665 20617861 -222046492 + MER5A DNA MER1_type 1 188 -1 473 264 33 55 chr1 20617884 20618066 -222046287 - MER5B DNA MER1_type 0 178 1 2160 108 0 7 chr1 20618798 20619077 -222045276 + AluSg SINE Alu 3 279 -31 983 137 128 39 chr1 20619715 20619919 -222044434 + Charlie1 DNA MER1_type 6 227 -2534 606 202 42 0 chr1 20619925 20620044 -222044309 + Charlie1 DNA MER1_type 2638 2761 0 271 244 26 13 chr1 20620475 20620553 -222043800 - L2 LINE L2 -5 3267 3189 1709 196 0 0 chr1 20620759 20621055 -222043298 - AluJb SINE Alu -15 297 2 1453 281 92 48 chr1 20621313 20622145 -222042208 - L1MC4a LINE L1 -752 5394 4600 1648 175 48 3 chr1 20622145 20622436 -222041917 - AluJb SINE Alu -8 304 1 1453 281 92 48 chr1 20622436 20622852 -222041501 - L1MC4a LINE L1 -1546 4600 4611 2241 76 53 23 chr1 20622852 20623156 -222041197 - AluSq SINE Alu 0 313 1 1453 281 92 48 chr1 20623156 20623243 -222041110 - L1MC4a LINE L1 -1534 4612 4530 301 263 30 30 chr1 20623275 20623374 -222040979 - L1MC4a LINE L1 -1686 4460 4362 4597 188 53 11 chr1 20623450 20624160 -222040193 - L1MB5 LINE L1 0 6174 5496 2372 72 0 3 chr1 20624160 20624451 -222039902 - AluY SINE Alu -21 290 1 4597 188 53 11 chr1 20624451 20624862 -222039491 - L1MB5 LINE L1 -678 5496 4058 377 269 32 59 chr1 20624869 20624982 -222039371 - L1ME LINE L1 -325 5796 5688 2076 139 0 13 chr1 20624982 20625298 -222039055 - AluJb SINE Alu 0 312 1 377 269 32 59 chr1 20625298 20625370 -222038983 - L1ME LINE L1 -433 5688 5616 2377 95 0 0 chr1 20627407 20627702 -222036651 + AluSg SINE Alu 1 295 -15 488 235 206 0 chr1 20627909 20628045 -222036308 + MER3 DNA MER1_type 46 209 0 288 242 16 0 chr1 20627992 20628054 -222036299 - MER3 DNA MER1_type -108 101 39 * 509 222 43 87 chr1 20628823 20629030 -222035323 - L1ME LINE L1 -365 5756 5559 2442 90 0 0 chr1 20633336 20633637 -222030716 - AluSg SINE Alu -9 301 1 202 258 101 0 chr1 20635819 20635908 -222028445 + L3 LINE CR1 1450 1547 -30 1459 188 3 24 chr1 20636859 20637151 -222027202 + AluJo SINE Alu 1 286 -26 269 174 72 14 chr1 20637475 20637544 -222026809 - MIR SINE MIR -156 106 34 1670 169 11 0 chr1 20637666 20637945 -222026408 + AluJo SINE Alu 1 282 -30 195 186 0 0 chr1 20638164 20638207 -222026146 - L2 LINE L2 -556 2758 2716 324 263 0 0 chr1 20638757 20638833 -222025520 + MIR SINE MIR 187 262 0 439 231 157 34 chr1 20639000 20639147 -222025206 - MER5A DNA MER1_type -8 181 17 2665 43 0 0 chr1 20639362 20639667 -222024686 + AluY SINE Alu 1 305 -6 2293 93 7 3 chr1 20640358 20640659 -222023694 - AluSp SINE Alu -11 302 1 2633 40 0 3 chr1 20641422 20641725 -222022628 + AluY SINE Alu 1 302 -9 13831 76 4 0 chr1 20641843 20643698 -222020655 - L1P LINE L1 -2802 3344 1482 3661 118 0 4 chr1 20643698 20644207 -222020146 - MER9 LTR ERVK 0 511 5 2032 65 76 0 chr1 20644211 20644473 -222019880 - HERVK9 LTR ERVK 0 5916 5635 22957 76 10 3 chr1 20644559 20647501 -222016852 - HERVK9 LTR ERVK -275 5641 2680 261 200 40 13 chr1 20647794 20647869 -222016484 + L2 LINE L2 2982 3058 -255 285 165 242 15 chr1 20648806 20648940 -222015413 - MIR SINE MIR -25 183 27 246 320 64 0 chr1 20649045 20649123 -222015230 + MER81 DNA DNA 2 84 -30 2471 65 7 0 chr1 20649124 20649431 -222014922 + AluY SINE Alu 1 309 -2 811 109 0 62 chr1 20649441 20649569 -222014784 + AluSq/x SINE Alu 1 120 -193 1968 141 21 55 chr1 20649569 20649953 -222014400 - L1PA16 LINE L1 -68 6098 5728 1648 124 11 28 chr1 20650609 20650647 -222013706 - L1PA16 LINE L1 -630 5531 5494 2171 125 0 3 chr1 20650647 20650943 -222013410 - AluSx SINE Alu -16 296 2 2162 108 10 0 chr1 20650944 20651232 -222013121 - AluSx SINE Alu -11 301 11 1648 124 11 28 chr1 20651232 20651418 -222012935 - L1PA16 LINE L1 -667 5494 5313 2429 75 0 0 chr1 20651418 20651713 -222012640 - AluY SINE Alu -15 296 2 1648 124 11 28 chr1 20651713 20651889 -222012464 - L1PA16 LINE L1 -848 5313 5135 1632 129 4 15 chr1 20651890 20652153 -222012200 + L1PA13 LINE L1 5901 6160 -3 2008 128 0 56 chr1 20652676 20652995 -222011358 + AluSx SINE Alu 1 301 -11 270 179 0 0 chr1 20653019 20653075 -222011278 + A-rich Low_complexity Low_complexity 1 56 0 2143 108 0 17 chr1 20653608 20653905 -222010448 - AluSq SINE Alu -21 292 1 2106 108 0 18 chr1 20653917 20654203 -222010150 - AluSg SINE Alu -15 295 15 205 306 0 16 chr1 20654331 20654393 -222009960 + MER5A DNA MER1_type 129 189 0 986 166 63 5 chr1 20654519 20654724 -222009629 + MER20 DNA MER1_type 1 217 -2 1603 189 47 10 chr1 20654898 20655195 -222009158 + AluJo SINE Alu 1 308 -4 342 115 0 0 chr1 20655195 20655247 -222009106 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 949 180 33 6 chr1 20655532 20655715 -222008638 + MER5A DNA MER1_type 2 189 0 606 157 26 9 chr1 20655960 20656075 -222008278 - HsTC2 DNA Tc2 -1774 124 8 950 251 64 4 chr1 20656306 20656557 -222007796 - MLT1J LTR MaLR -1 510 245 226 242 144 13 chr1 20656564 20656717 -222007636 - L2 LINE L2 -1155 2159 1987 962 278 72 30 chr1 20656998 20657361 -222006992 + LTR33 LTR ERVL 1 378 -143 794 126 17 0 chr1 20657369 20657488 -222006865 - LOR1a LTR ERV1 0 497 377 1800 193 44 42 chr1 20657596 20658005 -222006348 - LOR1b LTR ERV1 -51 410 1 434 248 23 23 chr1 20658005 20658126 -222006227 + LTR33 LTR ERVL 401 521 0 2629 253 98 17 chr1 20658128 20659155 -222005198 + L2 LINE L2 1840 2950 -364 1178 203 63 12 chr1 20659155 20659516 -222004837 + MER66A LTR ERV1 28 438 -40 755 258 28 16 chr1 20659516 20659768 -222004585 + L2 LINE L2 2938 3192 -121 1350 90 204 55 chr1 20659838 20660093 -222004260 - AluSg SINE Alu -17 293 1 198 219 0 0 chr1 20660130 20660171 -222004182 + L2 LINE L2 3268 3308 -5 708 203 20 20 chr1 20661554 20661707 -222002646 - MLT1D LTR MaLR -4 501 349 * 896 166 86 11 chr1 20661695 20661870 -222002483 - MLT1D LTR MaLR -317 188 1 426 194 0 0 chr1 20662170 20662242 -222002111 - LOR1b LTR ERV1 -36 425 354 1481 152 117 72 chr1 20662430 20662859 -222001494 - LTR7 LTR ERV1 -2 448 1 197 312 0 13 chr1 20663513 20663590 -222000763 - MIR SINE MIR -133 129 54 3724 100 20 60 chr1 20663705 20663773 -222000580 + LTR9B LTR ERV1 2 71 -573 1215 60 0 12 chr1 20663773 20663785 -222000568 - L1PA4 LINE L1 -1 6154 6143 204 67 0 0 chr1 20663785 20663815 -222000538 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1215 60 0 12 chr1 20663815 20663968 -222000385 - L1PA4 LINE L1 -12 6143 5991 3724 100 20 60 chr1 20663968 20664487 -221999866 + LTR9B LTR ERV1 71 566 -78 2341 110 3 0 chr1 20664490 20664801 -221999552 + AluY SINE Alu 1 311 0 232 114 0 0 chr1 20664801 20664836 -221999517 + (A)n Simple_repeat Simple_repeat 1 180 0 * 362 247 22 0 chr1 20664832 20664921 -221999432 + LTR9B LTR ERV1 554 644 0 237 282 0 14 chr1 20665034 20665105 -221999248 - MLT1K LTR MaLR 0 588 519 245 19 19 75 chr1 20665135 20665188 -221999165 + (CCCCCA)n Simple_repeat Simple_repeat 3 52 0 184 327 67 64 chr1 20665188 20665568 -221998785 - L2 LINE L2 -705 2609 2226 380 322 44 31 chr1 20665608 20665968 -221998385 - L2 LINE L2 -1220 2094 1730 247 188 0 0 chr1 20666234 20666282 -221998071 + L2 LINE L2 3139 3186 -86 222 219 0 0 chr1 20666282 20666323 -221998030 + L2 LINE L2 3144 3184 -88 309 281 0 52 chr1 20667025 20667121 -221997232 - L2 LINE L2 0 3313 3223 399 303 162 39 chr1 20667137 20667421 -221996932 + L2 LINE L2 2860 3178 -135 1163 280 38 14 chr1 20667526 20667947 -221996406 - LTR16B LTR ERVL 0 464 34 1733 223 2 8 chr1 20668096 20668495 -221995858 + L1ME2 LINE L1 5510 5906 -258 304 180 49 0 chr1 20668506 20668567 -221995786 + AluSp/q SINE Alu 232 295 -8 627 232 116 17 chr1 20668569 20668650 -221995703 + L1ME2 LINE L1 5900 5972 -192 2194 176 10 3 chr1 20668650 20669037 -221995316 + MLT1B LTR MaLR 1 390 0 627 232 116 17 chr1 20669037 20669196 -221995157 + L1ME2 LINE L1 5972 6164 0 286 261 31 37 chr1 20669220 20669381 -221994972 + L1MC5 LINE L1 7775 7934 -27 2516 80 0 3 chr1 20669419 20669730 -221994623 - AluSg SINE Alu 0 310 1 383 345 74 10 chr1 20669834 20670037 -221994316 + MIR SINE MIR 3 218 -44 2196 135 0 3 chr1 20670043 20670355 -221993998 - AluSq SINE Alu -2 311 1 294 297 51 8 chr1 20670356 20670474 -221993879 - MLT1K LTR MaLR -11 577 455 214 237 0 0 chr1 20670485 20670523 -221993830 + polypyrimidine Low_complexity Low_complexity 2 39 0 760 318 42 45 chr1 20670712 20671159 -221993194 + L2 LINE L2 2868 3313 0 296 327 58 0 chr1 20671158 20671262 -221993091 + MIR SINE MIR 134 243 -19 * 467 327 43 0 chr1 20671776 20671938 -221992415 + MER115 DNA AcHobo 91 259 -434 180 0 0 0 chr1 20672086 20672106 -221992247 + (TTCCC)n Simple_repeat Simple_repeat 3 22 0 2243 100 20 3 chr1 20672320 20672619 -221991734 - AluSg SINE Alu -4 306 3 233 232 18 0 chr1 20673152 20673208 -221991145 - L1MC/D LINE L1 -2158 5650 5594 405 273 71 96 chr1 20674314 20674396 -221989957 + HAL1 LINE L1 1108 1190 -1317 2002 149 0 7 chr1 20674396 20674697 -221989656 + 7SLRNA srpRNA srpRNA 2 300 -20 2356 93 3 13 chr1 20674697 20675006 -221989347 - AluSp SINE Alu 0 313 7 405 273 71 96 chr1 20675006 20675497 -221988856 + HAL1 LINE L1 1188 1668 -839 1837 151 10 40 chr1 20675843 20676142 -221988211 + AluJo SINE Alu 3 292 -20 835 204 250 4 chr1 20676181 20676441 -221987912 + MER5C DNA MER1_type 1 324 0 809 254 67 11 chr1 20676476 20676744 -221987609 - MER58 DNA MER1_type -58 283 1 1393 280 84 53 chr1 20676836 20677578 -221986775 - L1MC4a LINE L1 -1656 6152 5388 230 224 40 169 chr1 20677581 20677782 -221986571 - MER91A DNA MER1_type 0 196 22 856 182 0 0 chr1 20677919 20678062 -221986291 + FLAM_C SINE Alu 1 143 0 606 268 6 24 chr1 20678062 20678226 -221986127 - MER45A DNA AcHobo -17 161 1 342 250 291 14 chr1 20678482 20678630 -221985723 - MIR SINE MIR -54 208 20 690 183 0 58 chr1 20678636 20678773 -221985580 - FLAM_A SINE Alu 0 133 5 543 265 205 40 chr1 20679498 20679996 -221984357 + MLT1L LTR MaLR 21 600 -15 616 304 210 20 chr1 20680137 20681392 -221982961 + L2 LINE L2 1731 3233 -39 270 0 0 0 chr1 20682397 20682427 -221981926 + (CA)n Simple_repeat Simple_repeat 1 30 0 238 304 11 39 chr1 20682753 20682934 -221981419 + (CA)n Simple_repeat Simple_repeat 1 176 0 186 211 70 18 chr1 20683512 20683569 -221980784 - L2 LINE L2 0 3272 3213 312 284 24 22 chr1 20684166 20684343 -221980010 + MLT1I LTR MaLR 268 398 -11 2120 163 62 33 chr1 20684401 20684855 -221979498 + MLT1C LTR MaLR 1 467 0 362 313 45 81 chr1 20685201 20685364 -221978989 - L2 LINE L2 -42 3271 3118 3602 108 54 40 chr1 20685364 20685936 -221978417 + LTR19B LTR ERV1 1 580 0 362 313 45 81 chr1 20685936 20686018 -221978335 - L2 LINE L2 -195 3118 3035 2404 94 0 0 chr1 20686131 20686440 -221977913 - AluSc SINE Alu 0 309 1 2415 183 97 26 chr1 20686524 20687131 -221977222 - L1MC4a LINE L1 -3 7805 7156 3648 106 115 72 chr1 20687132 20688059 -221976294 - pTR5 LTR ERV1 -5 2433 1158 715 110 189 0 chr1 20688163 20688290 -221976063 - MSTA LTR MaLR -2 426 276 4092 83 14 20 chr1 20688293 20688844 -221975509 + LTR14 LTR ERVK 1 548 0 5039 123 7 3 chr1 20688844 20689598 -221974755 + HERVKC4 LTR ERVK 1 757 -4505 3034 294 12 3 chr1 20689579 20690487 -221973866 + HERVKC4 LTR ERVK 862 1777 -5640 * 11108 190 20 10 chr1 20690475 20693578 -221970775 + HERVKC4 LTR ERVK 3517 5256 -6 3932 73 6 20 chr1 20693580 20694117 -221970236 + LTR14 LTR ERVK 1 529 -19 874 148 40 0 chr1 20694294 20694443 -221969910 - MSTA LTR MaLR -273 155 1 627 207 0 0 chr1 20694443 20694593 -221969760 + (ATG)n Simple_repeat Simple_repeat 1 150 0 374 273 50 29 chr1 20694851 20695061 -221969292 - MIR3 SINE MIR -8 254 37 2307 117 0 0 chr1 20695730 20696038 -221968315 - AluSq SINE Alu -5 308 1 376 218 97 26 chr1 20696275 20696502 -221967851 + ORSL DNA AcHobo 2 273 -2 349 289 125 8 chr1 20696555 20696683 -221967670 + MIR SINE MIR 114 256 -6 224 342 34 33 chr1 20696740 20696863 -221967490 - MIR SINE MIR -62 146 27 243 0 0 0 chr1 20698216 20698243 -221966110 + (TCTCCC)n Simple_repeat Simple_repeat 3 29 0 187 172 103 52 chr1 20699462 20699512 -221964841 + L3 LINE CR1 1426 1478 -99 331 273 45 65 chr1 20699512 20699666 -221964687 + MIR3 SINE MIR 1 151 -57 196 204 129 43 chr1 20701055 20701148 -221963205 - L2 LINE L2 -1 3271 3171 1290 96 14 53 chr1 20701277 20701485 -221962868 - MER30 DNA MER1_type -29 201 2 452 277 29 15 chr1 20701487 20701624 -221962729 - L2 LINE L2 -517 2797 2659 2324 115 0 0 chr1 20701675 20701979 -221962374 - AluSx SINE Alu -8 304 1 366 190 44 13 chr1 20702337 20702445 -221961908 + MIR SINE MIR 45 152 -61 350 268 169 56 chr1 20702468 20702681 -221961672 + MIR SINE MIR 20 256 -6 366 261 133 39 chr1 20702931 20703111 -221961242 + MIR SINE MIR 66 262 0 247 260 0 0 chr1 20703109 20703159 -221961194 - MIR SINE MIR -15 247 198 * 666 267 36 61 chr1 20703193 20703440 -221960913 - MIR SINE MIR -6 256 16 258 305 0 0 chr1 20703535 20703594 -221960759 + polypyrimidine Low_complexity Low_complexity 5 63 0 207 122 0 49 chr1 20703597 20703638 -221960715 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 189 171 0 0 chr1 20703652 20703687 -221960666 + CT-rich Low_complexity Low_complexity 4 38 0 3074 202 61 19 chr1 20703687 20704285 -221960068 - L1ME3 LINE L1 -8 6154 5516 2616 65 0 0 chr1 20704285 20704593 -221959760 + AluY SINE Alu 1 308 -3 3074 202 61 19 chr1 20704593 20704750 -221959603 - L1ME3 LINE L1 -646 5516 5367 1902 151 17 20 chr1 20704753 20705052 -221959301 - AluJo SINE Alu -14 298 1 635 75 0 21 chr1 20705061 20705155 -221959198 - AluSg/x SINE Alu -5 304 213 513 268 57 60 chr1 20705161 20705460 -221958893 - L1ME3 LINE L1 -797 5349 5052 790 156 0 0 chr1 20705779 20705901 -221958452 + MER1B DNA MER1_type 1 122 -175 210 333 76 0 chr1 20705920 20706025 -221958328 - MIR SINE MIR -48 214 102 1352 114 19 19 chr1 20706026 20706236 -221958117 + MER1B DNA MER1_type 130 339 0 317 320 25 16 chr1 20706296 20706418 -221957935 - L2 LINE L2 0 3272 3150 398 281 39 31 chr1 20706441 20706569 -221957784 - L2 LINE L2 0 3272 3144 305 307 83 53 chr1 20707227 20707455 -221956898 + L2 LINE L2 3033 3267 -5 965 229 25 62 chr1 20707495 20707666 -221956687 + MIR SINE MIR 25 187 -75 2087 109 33 0 chr1 20707666 20707993 -221956360 + AluSx SINE Alu 1 336 0 965 229 25 62 chr1 20707993 20708060 -221956293 + MIR SINE MIR 187 255 -7 182 234 109 47 chr1 20708080 20708144 -221956209 + MIR SINE MIR 98 165 -97 709 243 136 65 chr1 20708147 20708167 -221956186 - MLT1L LTR MaLR -5 610 593 1388 219 68 7 chr1 20708167 20708459 -221955894 - AluJo SINE Alu -1 311 2 709 243 136 65 chr1 20708459 20708584 -221955769 - MLT1L LTR MaLR -22 593 478 1972 154 3 3 chr1 20708584 20708883 -221955470 + AluSx SINE Alu 2 300 -12 709 243 136 65 chr1 20708883 20709119 -221955234 - MLT1L LTR MaLR -137 478 201 2387 101 3 0 chr1 20709176 20709482 -221954871 - AluSx SINE Alu -2 310 4 216 224 41 0 chr1 20709751 20709800 -221954553 - L2 LINE L2 -12 3301 3251 2161 128 26 7 chr1 20710023 20710329 -221954024 + AluSx SINE Alu 1 312 0 862 243 37 9 chr1 20710528 20710746 -221953607 - MER58A DNA MER1_type 0 224 1 240 337 10 20 chr1 20710747 20710845 -221953508 + MIR3 SINE MIR 14 110 -98 2146 94 3 44 chr1 20710854 20711171 -221953182 + AluSq SINE Alu 1 305 0 400 276 22 103 chr1 20711344 20711529 -221952824 + MIR SINE MIR 83 252 -10 973 183 61 19 chr1 20711714 20711929 -221952424 - MIR SINE MIR -21 241 20 570 284 147 0 chr1 20712144 20712369 -221951984 - MIR SINE MIR -3 259 2 589 228 44 13 chr1 20712428 20712586 -221951767 - MIR SINE MIR -12 250 88 1347 271 17 3 chr1 20712591 20712953 -221951400 + LTR16A LTR ERVL 22 388 -62 2180 133 3 0 chr1 20713015 20713323 -221951030 - AluSx SINE Alu -3 309 1 2369 95 0 3 chr1 20714273 20714579 -221949774 + AluSq SINE Alu 1 305 -8 1111 253 4 9 chr1 20715082 20715311 -221949042 - MIR SINE MIR -15 247 20 184 189 104 113 chr1 20715466 20715572 -221948781 + L2 LINE L2 3132 3236 -77 202 303 40 0 chr1 20715840 20715916 -221948437 - MIR SINE MIR -19 243 165 * 598 289 77 29 chr1 20715914 20716291 -221948062 + L2 LINE L2 2517 2911 -403 443 149 14 0 chr1 20716351 20716425 -221947928 + Charlie3 DNA MER1_type 2628 2702 -8 228 208 19 0 chr1 20717252 20717305 -221947048 + MLT1L LTR MaLR 504 557 -58 382 248 68 17 chr1 20717334 20717451 -221946902 + MER5A DNA MER1_type 8 130 -59 2368 106 0 3 chr1 20718117 20718420 -221945933 - AluSq SINE Alu -10 303 2 445 207 30 52 chr1 20718421 20718556 -221945797 - MIR SINE MIR -58 150 19 568 282 105 6 chr1 20718878 20719059 -221945294 - MIR SINE MIR -3 259 61 349 239 76 0 chr1 20719309 20719401 -221944952 - MIR3 SINE MIR -21 187 89 554 264 31 12 chr1 20719495 20719658 -221944695 + MIR SINE MIR 88 253 -9 420 258 62 16 chr1 20719696 20719824 -221944529 + MIR3 SINE MIR 36 169 -39 295 324 57 0 chr1 20719953 20720058 -221944295 + L2 LINE L2 3198 3308 -5 758 196 48 48 chr1 20720622 20720811 -221943542 - MER20 DNA MER1_type -7 212 24 231 299 75 28 chr1 20720946 20721087 -221943266 - MIR SINE MIR -57 151 16 2227 62 79 17 chr1 20721362 20721653 -221942700 - AluSp SINE Alu -4 309 1 227 286 14 29 chr1 20721703 20721773 -221942580 - L2 LINE L2 -1 3271 3203 746 246 83 42 chr1 20721777 20722017 -221942336 - MIR SINE MIR -2 260 11 597 312 13 39 chr1 20722742 20722853 -221941500 - MIR SINE MIR 0 262 159 2198 113 3 10 chr1 20722853 20723162 -221941191 + AluSx SINE Alu 1 307 -5 597 312 13 39 chr1 20723162 20723281 -221941072 - MIR SINE MIR -103 159 38 509 307 23 17 chr1 20724083 20724259 -221940094 + MIR SINE MIR 10 186 -76 463 264 110 52 chr1 20724453 20724608 -221939745 + MER5A DNA MER1_type 26 189 0 474 323 90 27 chr1 20725013 20725236 -221939117 + MIR SINE MIR 12 248 -14 270 263 119 62 chr1 20725396 20725556 -221938797 - L2 LINE L2 -13 3300 3132 1011 185 12 18 chr1 20725563 20725814 -221938539 + AluJb SINE Alu 1 303 -9 257 235 0 0 chr1 20725861 20725912 -221938441 - L2 LINE L2 -257 3056 3006 909 120 0 8 chr1 20725941 20726066 -221938287 + FLAM_A SINE Alu 11 134 -8 1142 289 158 15 chr1 20726312 20727098 -221937255 - L2 LINE L2 -8 3305 2420 2416 92 0 22 chr1 20727101 20727418 -221936935 - AluSx SINE Alu -2 310 1 224 277 0 46 chr1 20728163 20728228 -221936125 - MER5A DNA MER1_type -107 82 21 215 252 269 0 chr1 20728409 20728528 -221935825 - L2 LINE L2 -1 3312 3162 1661 167 219 0 chr1 20728646 20729006 -221935347 + MLT1D LTR MaLR 12 450 -55 1337 83 0 39 chr1 20729022 20729203 -221935150 - AluSq SINE Alu -120 193 20 768 162 0 37 chr1 20729377 20729513 -221934840 - FLAM_A SINE Alu -4 138 8 749 279 83 53 chr1 20729559 20729959 -221934394 - L1ME4a LINE L1 -265 5856 5444 2023 135 7 14 chr1 20729969 20730266 -221934087 - AluJb SINE Alu -17 295 1 460 253 25 86 chr1 20730705 20730817 -221933536 + MIR3 SINE MIR 42 144 -64 1999 114 40 4 chr1 20730817 20731111 -221933242 + AluSx SINE Alu 2 305 0 460 253 25 86 chr1 20731111 20731159 -221933194 + MIR3 SINE MIR 144 193 -15 555 360 30 5 chr1 20731221 20731421 -221932932 + MIR SINE MIR 47 251 -11 888 259 15 10 chr1 20732089 20732290 -221932063 + MIR SINE MIR 61 262 0 434 297 43 81 chr1 20732442 20732651 -221931702 + MIR3 SINE MIR 1 201 -7 571 268 93 21 chr1 20732740 20732934 -221931419 + MIR SINE MIR 44 251 -11 2514 78 0 25 chr1 20732971 20733291 -221931062 + AluSq SINE Alu 1 312 -1 283 289 282 7 chr1 20733331 20733473 -221930880 - MIR SINE MIR -14 248 68 2488 71 0 0 chr1 20734169 20734464 -221929889 - AluY SINE Alu -16 295 1 1801 148 3 31 chr1 20734625 20734915 -221929438 - AluJb SINE Alu -30 282 1 414 226 233 44 chr1 20735150 20735309 -221929044 - MER5A DNA MER1_type 0 189 1 297 304 27 27 chr1 20735329 20735477 -221928876 - L2 LINE L2 -163 3109 2962 210 276 129 103 chr1 20735761 20735877 -221928476 - MIR SINE MIR -65 143 25 480 275 96 11 chr1 20736123 20736301 -221928052 - MIR SINE MIR 0 262 70 1010 264 63 63 chr1 20736316 20736565 -221927788 - MLT1I LTR MaLR -11 398 147 2011 164 0 0 chr1 20736565 20736870 -221927483 + AluJb SINE Alu 3 307 -5 1010 264 63 63 chr1 20736870 20737018 -221927335 - MLT1I LTR MaLR -261 148 1 2151 128 3 0 chr1 20737349 20737372 -221926981 - AluSx SINE Alu -6 306 285 294 29 0 0 chr1 20737372 20737407 -221926946 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 2151 128 3 0 chr1 20737407 20737688 -221926665 - AluSx SINE Alu -27 285 1 333 174 35 70 chr1 20737881 20737967 -221926386 - MIR SINE MIR -73 189 107 267 268 82 41 chr1 20738000 20738097 -221926256 - MIR SINE MIR -19 243 143 2596 66 0 0 chr1 20739285 20739588 -221924765 - AluY SINE Alu -8 303 1 298 184 0 0 chr1 20740801 20740850 -221923503 - MIR SINE MIR -62 146 98 486 262 0 0 chr1 20740883 20741032 -221923321 + (TCCA)n Simple_repeat Simple_repeat 3 151 0 582 244 0 0 chr1 20741070 20741242 -221923111 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 605 295 202 14 chr1 20741277 20741739 -221922614 - L2 LINE L2 -28 3244 2702 434 289 35 0 chr1 20741735 20741849 -221922504 + MIR SINE MIR 75 192 -70 * 606 277 82 15 chr1 20742899 20743105 -221921248 - MIR SINE MIR -28 234 15 2156 88 0 0 chr1 20743152 20743426 -221920927 - AluSc SINE Alu 0 309 36 414 324 78 6 chr1 20743430 20743609 -221920744 - MIR SINE MIR -51 211 20 272 344 145 33 chr1 20743871 20744112 -221920241 - L2 LINE L2 -20 3252 2985 2425 90 6 6 chr1 20744194 20744505 -221919848 + AluSq SINE Alu 2 312 -1 208 248 143 114 chr1 20744710 20744815 -221919538 - MIR SINE MIR -76 132 25 513 259 16 65 chr1 20744928 20745113 -221919240 - MIR SINE MIR -51 211 36 228 365 56 0 chr1 20745549 20745656 -221918697 - L2 LINE L2 -43 3229 3117 257 178 0 0 chr1 20745663 20745708 -221918645 - MLT1H LTR MaLR -4 545 501 278 299 201 33 chr1 20745782 20746056 -221918297 - MLT1H LTR MaLR -210 339 20 589 204 132 0 chr1 20747077 20747229 -221917124 - MLT1J LTR MaLR -7 504 333 858 202 45 17 chr1 20747316 20747494 -221916859 - MLT1J LTR MaLR -326 185 3 302 203 16 0 chr1 20747590 20747654 -221916699 - MLT1J LTR MaLR -37 474 410 500 190 50 0 chr1 20747678 20747778 -221916575 - MLT1C LTR MaLR 0 505 401 341 277 85 0 chr1 20747820 20747950 -221916403 - MLT1J LTR MaLR -359 152 12 813 213 195 46 chr1 20749134 20749462 -221914891 - MLT1C LTR MaLR -83 384 8 1762 129 0 0 chr1 20749810 20750066 -221914287 + THE1B LTR MaLR 1 256 -108 234 315 34 0 chr1 20750064 20750153 -221914200 - MLT1H1 LTR MaLR -7 548 457 * 530 219 24 14 chr1 20750800 20750971 -221913382 + MIR SINE MIR 15 191 -71 259 362 71 0 chr1 20751088 20751215 -221913138 + L2 LINE L2 3116 3251 -21 695 260 91 0 chr1 20751290 20751498 -221912855 - MIR SINE MIR -33 229 3 216 253 0 0 chr1 20751814 20751889 -221912464 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 239 204 0 chr1 20752060 20752148 -221912205 + L2 LINE L2 2946 3051 -221 848 246 91 0 chr1 20752211 20752431 -221911922 - MIR SINE MIR -22 240 1 199 234 16 47 chr1 20752611 20752675 -221911678 + MER5B DNA MER1_type 103 164 -14 336 230 27 0 chr1 20752695 20752769 -221911584 + L2 LINE L2 3170 3245 -27 195 167 0 0 chr1 20752743 20752773 -221911580 + MIR SINE MIR 216 245 -17 * 2127 115 0 7 chr1 20752953 20753248 -221911105 - AluSx SINE Alu -19 293 1 1482 186 0 32 chr1 20753512 20753856 -221910497 - pTR5 LTR ERV1 -1370 1068 736 437 246 223 39 chr1 20753856 20754129 -221910224 - L1MC4 LINE L1 -799 7243 6905 1557 143 0 16 chr1 20754129 20754373 -221909980 - AluSx SINE Alu -9 303 64 437 246 223 39 chr1 20754373 20754408 -221909945 - L1MC4 LINE L1 -1137 6905 6878 2319 106 0 0 chr1 20754412 20754714 -221909639 - AluY SINE Alu -9 302 1 559 202 59 46 chr1 20754744 20754788 -221909565 - L1MC4 LINE L1 -1280 6528 6486 2330 87 37 0 chr1 20754788 20755088 -221909265 - AluY SINE Alu 0 311 1 559 202 59 46 chr1 20755088 20755594 -221908759 - L1MC4 LINE L1 -1322 6486 6017 431 149 0 0 chr1 20755594 20755661 -221908692 - MLT1E LTR MaLR 0 593 527 2471 82 3 0 chr1 20755663 20755966 -221908387 + AluSp SINE Alu 1 304 -9 612 225 153 14 chr1 20756069 20756278 -221908075 - MLT1E LTR MaLR -300 293 56 771 231 40 0 chr1 20756317 20756516 -221907837 - L1MC4a LINE L1 -1787 6021 5815 1319 274 14 0 chr1 20756596 20756943 -221907410 - L1MC4a LINE L1 -1993 5815 5464 540 316 57 53 chr1 20756977 20757120 -221907233 - L2 LINE L2 -5 3267 3121 222 118 0 0 chr1 20757120 20757154 -221907199 + (CA)n Simple_repeat Simple_repeat 1 34 0 540 316 57 53 chr1 20757154 20757292 -221907061 - L2 LINE L2 -151 3121 2985 4313 155 31 25 chr1 20757409 20758243 -221906110 - L1MC1 LINE L1 -1 6332 5494 1645 108 0 0 chr1 20758243 20758474 -221905879 + LOR1a LTR ERV1 1 231 -266 6850 106 22 13 chr1 20758474 20759522 -221904831 + MER11C LTR ERVK 1 1057 -14 1608 181 0 0 chr1 20759563 20759833 -221904520 + LOR1a LTR ERV1 228 497 0 827 153 25 45 chr1 20759833 20759909 -221904444 - L1MC1 LINE L1 -2545 5497 5421 2178 130 0 0 chr1 20759909 20760208 -221904145 - AluSx SINE Alu -13 299 1 827 153 25 45 chr1 20760208 20760323 -221904030 - L1MC1 LINE L1 -2621 5421 5308 1383 103 5 15 chr1 20760323 20760526 -221903827 - L1PA8 LINE L1 -1 6171 5971 19050 132 23 35 chr1 20760526 20762180 -221902173 - L1P3 LINE L1 -2123 4338 2665 214 29 57 0 chr1 20762180 20762215 -221902138 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 19050 132 23 35 chr1 20762215 20764759 -221899594 - L1P3 LINE L1 -3796 2665 74 8480 157 24 24 chr1 20764766 20766242 -221898111 + L1P LINE L1 11 1486 -4660 3992 107 0 4 chr1 20766242 20766755 -221897598 + MER9 LTR ERVK 1 511 0 4678 69 7 5 chr1 20766755 20767346 -221897007 + HERVK9 LTR ERVK 1 592 -5324 34620 73 7 2 chr1 20767346 20771698 -221892655 + HERVK9 LTR ERVK 1268 5641 -275 2038 86 71 0 chr1 20771764 20772046 -221892307 + HERVK9 LTR ERVK 5635 5916 0 3848 118 0 4 chr1 20772050 20772559 -221891794 + MER9 LTR ERVK 5 511 0 25673 72 3 0 chr1 20772559 20775911 -221888442 + L1PA6 LINE L1 1482 4843 -1303 5844 50 1 1 chr1 20775923 20776602 -221887751 + L1PA6 LINE L1 5476 6154 0 660 107 0 0 chr1 20776607 20776691 -221887662 - L1P3 LINE L1 -6372 89 6 292 184 0 0 chr1 20776697 20776778 -221887575 - L1M LINE L1 -844 5302 5228 2476 153 20 5 chr1 20777130 20777528 -221886825 - MER66B LTR ERV1 0 486 83 386 168 0 32 chr1 20777756 20777851 -221886502 + (CACCAT)n Simple_repeat Simple_repeat 6 97 0 329 297 82 47 chr1 20778064 20778214 -221886139 - L2 LINE L2 -58 3255 3112 2475 95 0 0 chr1 20778214 20778520 -221885833 + AluSg SINE Alu 1 306 -4 329 297 82 47 chr1 20778520 20778773 -221885580 - L2 LINE L2 -201 3112 2838 708 248 93 102 chr1 20779426 20779487 -221884866 - MLT1H LTR MaLR -5 544 484 2258 106 0 20 chr1 20779487 20779790 -221884563 - AluSx SINE Alu -15 297 1 708 248 93 102 chr1 20779790 20780277 -221884076 - MLT1H LTR MaLR -65 484 1 1227 180 14 18 chr1 20780334 20780551 -221883802 - MER58A DNA MER1_type -8 216 1 379 213 148 19 chr1 20780683 20780791 -221883562 - L2 LINE L2 0 3313 3192 348 285 105 81 chr1 20780792 20781210 -221883143 - MLT1K LTR MaLR -20 568 141 619 272 12 23 chr1 20781508 20781681 -221882672 - MIR3 SINE MIR -19 189 19 462 211 22 11 chr1 20781878 20781968 -221882385 + MIR SINE MIR 25 115 -147 2061 89 0 28 chr1 20782193 20782498 -221881855 + AluSq SINE Alu 11 307 0 1143 233 49 89 chr1 20782626 20782904 -221881449 - MLT1J1 LTR MaLR -2 444 229 3696 78 13 0 chr1 20782904 20783368 -221880985 - L1PA13 LINE L1 -4 6159 5690 1143 233 49 89 chr1 20783368 20783548 -221880805 - MLT1J1 LTR MaLR -217 229 43 295 296 171 45 chr1 20783606 20783782 -221880571 + L2 LINE L2 3115 3312 -1 22 80 0 0 chr1 20783787 20783837 -221880516 + AT_rich Low_complexity Low_complexity 1 50 0 279 251 90 63 chr1 20783837 20784056 -221880297 - MLT1K LTR MaLR -12 603 369 441 129 57 0 chr1 20784717 20784787 -221879566 - MER66B LTR ERV1 -412 74 1 539 308 49 31 chr1 20784787 20785073 -221879280 - LTR16B LTR ERVL -152 312 22 1381 247 12 6 chr1 20785199 20785535 -221878818 + L1ME2 LINE L1 5505 5842 -322 292 287 119 20 chr1 20785536 20785637 -221878716 - L1ME2 LINE L1 -69 6095 5985 529 178 0 22 chr1 20785690 20785780 -221878573 - MSTC LTR MaLR -340 88 1 705 186 21 7 chr1 20785781 20785921 -221878432 - MSTC-int LTR MaLR -1 1734 1593 3385 163 25 38 chr1 20785995 20786656 -221877697 + MER54A LTR ERVL 42 901 0 1965 114 37 0 chr1 20786681 20787008 -221877345 + AluSg SINE Alu 1 337 0 1240 128 0 0 chr1 20787052 20787224 -221877129 + AluSc SINE Alu 1 172 -137 10613 169 48 30 chr1 20787342 20787540 -221876813 - L1 LINE L1 -1070 6495 6302 1613 171 17 119 chr1 20787540 20787943 -221876410 - MLT1A1 LTR MaLR 0 365 4 7453 233 33 38 chr1 20787947 20789690 -221874663 - MLT1A1-int LTR MaLR -1 1734 1 1786 183 5 92 chr1 20789690 20790090 -221874263 - MLT1A1 LTR MaLR 0 365 1 10613 169 48 30 chr1 20790090 20792166 -221872187 - L1 LINE L1 -1264 6301 4174 359 247 34 0 chr1 20792162 20792251 -221872102 - L1 LINE L1 -3630 3935 3844 * 403 109 0 0 chr1 20792255 20792310 -221872043 - Tigger2 DNA MER2_type -81 2637 2583 968 157 6 0 chr1 20792312 20792471 -221871882 + Tigger2 DNA MER2_type 2510 2669 -49 2707 229 60 26 chr1 20792578 20792830 -221871523 - L1 LINE L1 -4425 3140 2898 1988 136 14 0 chr1 20792830 20793116 -221871237 - AluSx SINE Alu -22 290 1 2707 229 60 26 chr1 20793116 20793693 -221870660 - L1 LINE L1 -4667 2898 2283 5992 154 37 16 chr1 20793697 20794972 -221869381 - L1MA5 LINE L1 -5 6295 5048 204 97 0 0 chr1 20794972 20795003 -221869350 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1788 171 0 4 chr1 20795009 20795284 -221869069 - AluJb SINE Alu -38 274 1 5992 154 37 16 chr1 20795284 20795522 -221868831 - L1MA5 LINE L1 -1256 5044 4762 751 231 0 0 chr1 20795535 20795665 -221868688 - FLAM_C SINE Alu -12 131 2 4800 183 29 23 chr1 20795666 20796218 -221868135 - L1MA5 LINE L1 -1372 4774 4212 2038 96 3 11 chr1 20796218 20796500 -221867853 + AluSc SINE Alu 22 301 -8 4800 183 29 23 chr1 20796500 20796983 -221867370 - L1MA5 LINE L1 -1934 4212 3733 2575 57 0 0 chr1 20797583 20797884 -221866469 + AluY SINE Alu 2 302 -9 64 0 0 13 chr1 20797908 20797923 -221866430 + AT_rich Low_complexity Low_complexity 1 15 -59 2704 109 3 21 chr1 20797923 20798300 -221866053 - L1PB1 LINE L1 0 6867 6498 64 0 0 13 chr1 20798300 20798359 -221865994 + AT_rich Low_complexity Low_complexity 15 74 0 808 128 38 0 chr1 20798359 20798492 -221865861 - L1PB1 LINE L1 -350 6517 6380 13310 192 17 22 chr1 20798605 20799028 -221865325 - L1PB1 LINE L1 -727 6140 5716 1806 152 35 3 chr1 20799028 20799318 -221865035 - AluSx SINE Alu -13 299 1 13310 192 17 22 chr1 20799318 20799929 -221864424 - L1PB1 LINE L1 -1151 5716 5103 180 0 0 0 chr1 20799929 20799949 -221864404 + (TG)n Simple_repeat Simple_repeat 1 20 0 13310 192 17 22 chr1 20799949 20800869 -221863484 - L1PB1 LINE L1 -1764 5103 4179 6553 96 12 5 chr1 20800869 20800928 -221863425 - L1PB1 LINE L1 -1 6150 6093 2493 79 0 0 chr1 20800928 20801231 -221863122 - AluY SINE Alu -8 303 1 6553 96 12 5 chr1 20801231 20802509 -221861844 - L1PB1 LINE L1 -58 6093 4823 13310 192 17 22 chr1 20802509 20803653 -221860700 - L1PB1 LINE L1 -2688 4179 3061 1349 175 18 4 chr1 20803664 20804002 -221860351 - LTR46 LTR ERV1 -67 393 5 2369 123 6 6 chr1 20804002 20804352 -221860001 - LTR46-int LTR ERV1 0 6985 6636 2815 149 124 8 chr1 20804352 20804874 -221859479 - LTR1 LTR ERV1 0 785 203 1186 123 106 13 chr1 20804970 20805206 -221859147 - LTR1 LTR ERV1 -527 258 1 2870 142 40 36 chr1 20805209 20805563 -221858790 - LTR46-int LTR ERV1 -300 6685 6327 4947 166 18 36 chr1 20805563 20806550 -221857803 - LTR5 LTR ERVK 0 969 1 2870 142 40 36 chr1 20806550 20806722 -221857631 - LTR46-int LTR ERV1 -658 6327 6157 * 24490 104 12 20 chr1 20806710 20810306 -221854047 - LTR46-int LTR ERV1 -1052 5933 2366 1225 140 58 2 chr1 20810303 20810637 -221853716 - LTR46-int LTR ERV1 -6532 453 1 * 1636 163 21 25 chr1 20810638 20811047 -221853306 - LTR46 LTR ERV1 0 460 1 17410 116 36 9 chr1 20811047 20812185 -221852168 - L1PB1 LINE L1 -3797 3065 1960 2192 110 7 10 chr1 20812185 20812495 -221851858 - AluSp SINE Alu -4 309 1 17410 116 36 9 chr1 20812495 20814059 -221850294 - L1PB1 LINE L1 -4902 1960 288 1594 164 46 0 chr1 20814059 20814322 -221850031 + AluJo SINE Alu 23 297 -15 2069 195 43 12 chr1 20814327 20814743 -221849610 - L1M2a LINE L1 -5378 1729 1301 180 0 0 0 chr1 20815199 20815219 -221849134 + (GA)n Simple_repeat Simple_repeat 1 20 0 245 114 0 23 chr1 20815629 20815673 -221848680 - L1M2a LINE L1 -6844 186 144 737 196 43 0 chr1 20815733 20815871 -221848482 - L1M2a LINE L1 -6885 145 2 626 197 143 68 chr1 20815872 20816106 -221848247 - L1MC3 LINE L1 -903 6882 6599 294 50 0 0 chr1 20816106 20816146 -221848207 + (CA)n Simple_repeat Simple_repeat 2 41 0 626 197 143 68 chr1 20816146 20816196 -221848157 - L1MC3 LINE L1 -1186 6599 6554 667 91 10 20 chr1 20816213 20816312 -221848041 + MER4A LTR ERV1 1 98 -566 1970 142 168 20 chr1 20816312 20816664 -221847689 + MER4A LTR ERV1 261 664 0 877 106 183 0 chr1 20816667 20816809 -221847544 + MER4A-int LTR ERV1 1 168 -6430 1057 103 26 6 chr1 20816809 20816965 -221847388 - LTR7 LTR ERV1 0 450 292 5198 142 5 6 chr1 20816975 20817948 -221846405 - HERVH LTR ERV1 -2297 4232 3800 * 17220 137 4 33 chr1 20817936 20821311 -221843042 - HERVH LTR ERV1 -4126 3587 1 540 114 0 25 chr1 20821334 20821413 -221842940 + LTR7 LTR ERV1 374 450 0 1825 139 8 102 chr1 20821413 20821936 -221842417 + LTR7-int LTR ERV1 164 836 -5762 1269 232 49 18 chr1 20821992 20822321 -221842032 + LTR7-int LTR ERV1 1861 3043 -4170 6105 91 65 31 chr1 20822341 20823247 -221841106 + MER4A-int LTR ERV1 194 1068 -5530 312 27 0 0 chr1 20823247 20823284 -221841069 + (TG)n Simple_repeat Simple_repeat 2 38 0 6105 91 65 31 chr1 20823284 20824034 -221840319 + MER4A-int LTR ERV1 1068 2495 -4103 1350 162 70 4 chr1 20824034 20824275 -221840078 - LTR8 LTR ERV1 -434 257 1 4396 121 75 26 chr1 20824275 20824971 -221839382 + MER4A-int LTR ERV1 2737 3488 -3110 2476 101 36 20 chr1 20824971 20825329 -221839024 + THE1B LTR MaLR 1 364 0 4396 121 75 26 chr1 20825329 20825531 -221838822 + MER4A-int LTR ERV1 3488 3679 -2919 15768 88 71 51 chr1 20825535 20827640 -221836713 + MER4A-int LTR ERV1 3840 6087 -511 629 13 0 0 chr1 20827640 20827716 -221836637 + AluY SINE Alu 229 304 -8 15768 88 71 51 chr1 20827716 20828237 -221836116 + MER4A-int LTR ERV1 6087 6596 -2 643 101 10 20 chr1 20828244 20828343 -221836010 + MER4A LTR ERV1 1 98 -566 1684 137 161 75 chr1 20828343 20828715 -221835638 + MER4A LTR ERV1 261 664 0 1264 230 51 70 chr1 20828715 20829246 -221835107 - L1MC4a LINE L1 -1268 6540 6020 717 195 27 0 chr1 20829274 20829423 -221834930 - L1MC2 LINE L1 -139 6205 6053 302 147 0 189 chr1 20829441 20829536 -221834817 - MLT1E LTR MaLR -1 592 516 772 278 94 8 chr1 20829622 20829856 -221834497 - MLT1E LTR MaLR -300 293 40 557 289 15 5 chr1 20829887 20830084 -221834269 - L1MC2 LINE L1 -1798 6010 5812 1383 255 37 0 chr1 20830157 20830506 -221833847 - L1MC2 LINE L1 -1983 5825 5464 526 327 79 35 chr1 20830576 20830743 -221833610 - L2 LINE L2 -5 3308 3150 2024 287 26 10 chr1 20830743 20831360 -221832993 + MLT2E LTR ERVL 1 627 -1 526 327 79 35 chr1 20831360 20831510 -221832843 - L2 LINE L2 -163 3150 2977 564 222 30 0 chr1 20831618 20831753 -221832600 - L1MC1 LINE L1 -1 6332 6194 687 184 0 0 chr1 20831754 20831863 -221832490 - L1PA13 LINE L1 -6678 109 1 4007 241 8 2 chr1 20831898 20832918 -221831435 - L1MC2 LINE L1 -2158 3988 2963 567 162 9 0 chr1 20832931 20833042 -221831311 - L1MC2 LINE L1 -3789 2357 2246 2143 88 0 0 chr1 20833043 20833315 -221831038 - AluSx SINE Alu -36 276 5 3348 206 12 4 chr1 20833317 20834081 -221830272 - L1MEc LINE L1 -3166 2980 2242 299 129 8 2 chr1 20834412 20834661 -221829692 + AluSx SINE Alu 1 301 0 1510 182 37 3 chr1 20834671 20834967 -221829386 + AluJo SINE Alu 1 306 -6 275 315 9 18 chr1 20835407 20835518 -221828835 + LTR67 LTR ERVL 354 463 -94 2303 103 3 0 chr1 20835762 20836073 -221828280 - AluSx SINE Alu 0 312 1 2018 100 62 0 chr1 20836246 20836537 -221827816 - AluSp SINE Alu -4 309 1 1945 147 3 7 chr1 20836825 20837131 -221827222 + AluJb SINE Alu 3 307 -5 1379 156 8 9 chr1 20837388 20837766 -221826587 + MSTA LTR MaLR 1 428 0 765 152 0 0 chr1 20838033 20838145 -221826208 + AluJb SINE Alu 2 113 -199 180 0 0 0 chr1 20838154 20838174 -221826179 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 925 178 19 0 chr1 20838570 20838727 -221825626 + FRAM SINE Alu 1 160 -6 2125 132 0 3 chr1 20839812 20840122 -221824231 + AluSx SINE Alu 1 309 -3 863 163 0 0 chr1 20840132 20840273 -221824080 + FLAM_C SINE Alu 1 141 -2 453 266 122 11 chr1 20840329 20840494 -221823859 + MER5A DNA MER1_type 4 189 0 3737 148 53 34 chr1 20840625 20841380 -221822973 - L1MC2 LINE L1 0 6344 5576 766 176 0 8 chr1 20841382 20841507 -221822846 + FAM SINE Alu 1 124 -61 1882 162 53 0 chr1 20841517 20841943 -221822410 - L1MC2 LINE L1 -743 5403 5133 745 253 0 6 chr1 20841945 20842103 -221822250 - MER63 DNA MER1_type -279 783 1 1423 211 4 0 chr1 20842245 20842525 -221821828 + AluJo SINE Alu 1 281 -31 1521 173 14 27 chr1 20842525 20842819 -221821534 - AluJb SINE Alu -20 292 2 399 276 58 111 chr1 20842842 20842926 -221821427 + L1ME LINE L1 4672 4759 -1387 2028 125 3 3 chr1 20842926 20843223 -221821130 + AluSx SINE Alu 1 297 -15 399 276 58 111 chr1 20843223 20843357 -221820996 + L1ME LINE L1 4759 4899 -1247 2134 108 3 0 chr1 20843357 20843662 -221820691 + AluSq SINE Alu 1 306 -7 399 276 58 111 chr1 20843662 20843972 -221820381 + L1ME LINE L1 4899 5166 -980 2241 84 7 0 chr1 20843972 20844271 -221820082 - AluSp SINE Alu -12 301 1 399 276 58 111 chr1 20844271 20844360 -221819993 + L1ME LINE L1 5166 5258 -888 425 293 125 32 chr1 20844494 20844779 -221819574 + L1ME LINE L1 5319 5630 -532 * 839 216 22 120 chr1 20844762 20844913 -221819440 + L1MC4 LINE L1 7446 7610 -432 1570 134 58 11 chr1 20844913 20845174 -221819179 + AluJb SINE Alu 3 275 -37 495 0 0 0 chr1 20845184 20845239 -221819114 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 839 216 22 120 chr1 20845239 20845433 -221818920 + L1MC4 LINE L1 7619 7767 -275 203 167 0 21 chr1 20846494 20846542 -221817811 + CT-rich Low_complexity Low_complexity 4 50 0 519 352 64 16 chr1 20846546 20846796 -221817557 + MIR SINE MIR 1 262 0 291 212 159 71 chr1 20846793 20846906 -221817447 - L2 LINE L2 -1 3271 3149 * 339 276 31 31 chr1 20846938 20847036 -221817317 - L2 LINE L2 -36 3236 3139 1393 196 23 123 chr1 20847186 20847346 -221817007 + L2 LINE L2 2912 3086 -227 1908 135 10 3 chr1 20847346 20847643 -221816710 + AluSx SINE Alu 1 299 -13 1393 196 23 123 chr1 20847643 20847922 -221816431 + L2 LINE L2 3086 3307 -6 234 128 0 0 chr1 20848000 20848039 -221816314 + (GA)n Simple_repeat Simple_repeat 2 40 0 642 274 169 58 chr1 20849074 20849121 -221815232 - L2 LINE L2 0 3313 3273 1951 100 50 0 chr1 20849121 20849402 -221814951 + AluSx SINE Alu 1 295 -17 642 274 169 58 chr1 20849402 20849697 -221814656 - L2 LINE L2 -40 3273 2933 581 309 63 23 chr1 20850184 20850485 -221813868 - L3 LINE CR1 -125 1452 1140 657 238 122 9 chr1 20850922 20851136 -221813217 - MIR SINE MIR 0 262 25 412 282 44 127 chr1 20851233 20851380 -221812973 - Charlie8 DNA MER1_type -2154 263 144 2101 103 13 10 chr1 20851380 20851691 -221812662 - AluSx SINE Alu 0 312 1 412 282 44 127 chr1 20851691 20851795 -221812558 - Charlie8 DNA MER1_type -2273 144 33 297 358 18 9 chr1 20851871 20851980 -221812373 - L3 LINE CR1 -1048 529 420 497 288 101 41 chr1 20852004 20852223 -221812130 + MIR SINE MIR 17 248 -14 391 295 49 0 chr1 20852603 20852725 -221811628 - L2 LINE L2 -1 3312 3185 218 105 26 0 chr1 20852869 20852907 -221811446 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 448 221 159 0 chr1 20852977 20853090 -221811263 - L2 LINE L2 -3 3269 3139 493 313 25 10 chr1 20853116 20853314 -221811039 - MIR SINE MIR -13 249 49 221 352 125 5 chr1 20853452 20853668 -221810685 - L2 LINE L2 -1090 2224 1983 367 286 134 35 chr1 20854002 20854173 -221810180 + L2 LINE L2 3116 3303 -10 1844 122 3 26 chr1 20854345 20854656 -221809697 + AluJb SINE Alu 1 304 -8 273 250 55 42 chr1 20854785 20854985 -221809368 - MIR SINE MIR -13 249 3 658 206 0 28 chr1 20855015 20855156 -221809197 - AluJb SINE Alu 0 312 176 375 256 90 21 chr1 20855207 20855364 -221808989 - MIR SINE MIR -63 145 20 1696 154 7 0 chr1 20855844 20856123 -221808230 + AluSx SINE Alu 25 305 -7 1229 238 80 3 chr1 20856877 20857213 -221807140 - MER74B LTR ERVL -26 596 235 3939 140 52 25 chr1 20857236 20857307 -221807046 - MER50 LTR ERV1 -20 714 646 1863 97 34 4 chr1 20857307 20857574 -221806779 + AluSc SINE Alu 16 290 -19 3939 140 52 25 chr1 20857574 20858197 -221806156 - MER50 LTR ERV1 -88 646 1 582 212 55 27 chr1 20858197 20858343 -221806010 - MER74B LTR ERVL -414 208 59 310 170 0 0 chr1 20858412 20858465 -221805888 + MIR SINE MIR 90 142 -66 468 308 21 1 chr1 20859272 20859417 -221804936 + MIR SINE MIR 36 181 -63 470 218 126 76 chr1 20859421 20859683 -221804670 - ORSL DNA AcHobo 0 275 1 208 369 115 0 chr1 20859719 20859841 -221804512 - L2 LINE L2 -22 3250 3115 349 287 62 16 chr1 20860439 20860568 -221803785 + MIR3 SINE MIR 2 136 -72 439 286 8 8 chr1 20860969 20861088 -221803265 + MIR3 SINE MIR 78 196 -12 577 313 57 22 chr1 20861217 20861447 -221802906 - MIR SINE MIR -23 239 2 278 321 62 0 chr1 20861794 20861906 -221802447 - MIR SINE MIR -60 202 84 1411 251 161 20 chr1 20861916 20862427 -221801926 - MLT1G1 LTR MaLR -1 594 12 1229 189 41 5 chr1 20862432 20862688 -221801665 + L1MC3 LINE L1 6376 6669 -1174 325 188 165 0 chr1 20862689 20862774 -221801579 + L1MC3 LINE L1 7655 7753 -32 604 131 131 0 chr1 20862808 20862907 -221801446 + MER2 DNA MER2_type 1 112 -233 1016 56 0 0 chr1 20862921 20863046 -221801307 - AluY SINE Alu -19 292 168 1492 170 30 108 chr1 20863062 20863432 -221800921 + L1MC3 LINE L1 6616 6956 -829 1553 129 60 143 chr1 20863435 20863596 -221800757 + L1MC3 LINE L1 7355 7528 -257 2207 91 3 10 chr1 20863596 20863894 -221800459 + AluSp SINE Alu 1 296 -17 1553 129 60 143 chr1 20863894 20864167 -221800186 + L1MC3 LINE L1 7528 7753 -32 1302 180 84 50 chr1 20864201 20864323 -221800030 + MER2 DNA MER2_type 1 117 -228 1745 144 13 17 chr1 20864323 20864621 -221799732 - AluJb SINE Alu -15 297 1 1302 180 84 50 chr1 20864621 20864820 -221799533 + MER2 DNA MER2_type 117 333 -12 1115 247 20 0 chr1 20864868 20865119 -221799234 - MLT1J2 LTR MaLR -156 294 39 192 317 125 17 chr1 20865605 20865725 -221798628 - MIR SINE MIR -50 212 80 213 298 0 0 chr1 20865855 20865902 -221798451 + L2 LINE L2 3139 3185 -87 305 280 32 40 chr1 20866915 20867040 -221797313 + MIR SINE MIR 6 129 -133 404 317 102 12 chr1 20867840 20868007 -221796346 - MIR SINE MIR -24 184 2 512 168 10 0 chr1 20868670 20868771 -221795582 + CT-rich Low_complexity Low_complexity 1 102 0 1842 152 39 0 chr1 20868771 20869054 -221795299 - AluSq SINE Alu -19 294 1 324 358 54 0 chr1 20869094 20869242 -221795111 - MIR SINE MIR -86 176 21 1499 162 16 8 chr1 20869250 20869497 -221794856 - AluJo SINE Alu -19 293 45 1345 242 108 61 chr1 20869602 20870225 -221794128 + MLT2F LTR ERVL 1 652 -11 686 238 0 0 chr1 20870567 20870689 -221793664 + FLAM_C SINE Alu 2 123 -20 4031 248 91 35 chr1 20870726 20871997 -221792356 + HERVL-F LTR ERVL 2417 3759 -2005 315 226 160 19 chr1 20872165 20872184 -221792169 + HERVL-F LTR ERVL 5534 5654 0 415 161 195 0 chr1 20872184 20872271 -221792082 + Ricksha DNA DNA 243 346 -908 1448 268 100 48 chr1 20872273 20872901 -221791452 + MLT2F LTR ERVL 3 663 0 317 176 73 0 chr1 20872914 20872982 -221791371 + L2 LINE L2 3200 3272 0 209 265 20 0 chr1 20873007 20873056 -221791297 - L2 LINE L2 -86 3186 3137 316 356 113 0 chr1 20873898 20874092 -221790261 - MIR SINE MIR 0 262 47 268 233 33 0 chr1 20874147 20874207 -221790146 + L2 LINE L2 3194 3255 -17 2359 97 0 0 chr1 20874609 20874898 -221789455 + AluY SINE Alu 1 289 -22 240 311 98 16 chr1 20874910 20875032 -221789321 + MIR3 SINE MIR 7 138 -70 319 206 27 0 chr1 20875044 20875117 -221789236 - MER112 DNA MER1_type -1 259 185 2080 164 0 0 chr1 20875451 20875763 -221788590 + AluSx SINE Alu 1 312 0 556 380 32 5 chr1 20875947 20876168 -221788185 + MIR SINE MIR 24 250 -12 190 136 318 0 chr1 20876687 20876731 -221787622 - L2 LINE L2 -9 3263 3206 2035 155 0 0 chr1 20876851 20877141 -221787212 + AluJo SINE Alu 9 298 -14 198 282 0 64 chr1 20877442 20877520 -221786833 - MER5A DNA MER1_type -76 113 41 1597 194 6 38 chr1 20877859 20878173 -221786180 + AluJb SINE Alu 1 304 -8 335 287 20 10 chr1 20878865 20878966 -221785387 - MIR SINE MIR -63 145 44 240 219 57 29 chr1 20879127 20879232 -221785121 + LTR48 LTR ERV1 629 736 -51 1169 155 0 11 chr1 20879251 20879438 -221784915 + AluJb SINE Alu 122 306 -6 418 196 11 0 chr1 20879725 20879817 -221784536 - MER113 DNA MER1_type? -302 219 127 2174 129 0 13 chr1 20879837 20880168 -221784185 + AluSx SINE Alu 1 312 0 211 220 51 51 chr1 20880473 20880532 -221783821 + MER5A DNA MER1_type 7 65 -124 3202 118 39 32 chr1 20880564 20880764 -221783589 - MER4B LTR ERV1 -36 574 377 4452 78 0 0 chr1 20880764 20881318 -221783035 + MER41A LTR ERV1 1 554 0 3202 118 39 32 chr1 20881318 20881687 -221782666 - MER4B LTR ERV1 -233 377 1 397 267 8 38 chr1 20881687 20881818 -221782535 + MER5A DNA MER1_type 63 189 0 2705 175 75 9 chr1 20881837 20882381 -221781972 + LTR26E LTR ERV1 39 618 -4 1821 99 34 0 chr1 20882510 20882743 -221781610 - AluSx SINE Alu -37 275 35 211 276 61 41 chr1 20882745 20882843 -221781510 + MIR SINE MIR 65 164 -98 277 240 58 58 chr1 20883424 20883480 -221780873 - MIR SINE MIR -100 162 104 4274 83 5 2 chr1 20883480 20884032 -221780321 + MER41A LTR ERV1 1 554 0 277 240 58 58 chr1 20884032 20884079 -221780274 - MIR SINE MIR -157 105 59 189 0 0 0 chr1 20884109 20884130 -221780223 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 212 403 33 9 chr1 20884271 20884482 -221779871 - L2 LINE L2 -179 3134 2919 27 0 0 0 chr1 20884571 20884598 -221779755 + AT_rich Low_complexity Low_complexity 1 27 0 426 228 163 42 chr1 20885078 20885239 -221779114 + MIR SINE MIR 6 183 -65 278 293 28 28 chr1 20885564 20885670 -221778683 - L2 LINE L2 0 3313 3208 2339 58 25 0 chr1 20885909 20886220 -221778133 + AluY SINE Alu 1 318 0 405 291 55 6 chr1 20886301 20886483 -221777870 + MLT1L LTR MaLR 372 562 -53 1809 151 42 0 chr1 20887008 20887293 -221777060 + AluJb SINE Alu 7 303 -9 294 47 93 0 chr1 20887297 20887340 -221777013 - FLAM SINE Alu -6 127 81 2125 116 3 0 chr1 20887441 20887787 -221776566 - AluSq SINE Alu 0 347 1 634 165 71 8 chr1 20887787 20887914 -221776439 - L1MC1 LINE L1 -8 6325 6191 863 297 34 36 chr1 20888141 20888585 -221775768 - LTR16A1 LTR ERVL -14 443 1 206 283 112 105 chr1 20888614 20888900 -221775453 - L2 LINE L2 -7 3265 2978 245 413 8 0 chr1 20889014 20889140 -221775213 - L2 LINE L2 -5 3267 3141 200 306 14 42 chr1 20889973 20890045 -221774308 - L2 LINE L2 0 3272 3203 413 250 145 0 chr1 20890259 20890383 -221773970 + MIR SINE MIR 121 262 0 263 253 172 0 chr1 20890496 20890595 -221773758 + MIR SINE MIR 35 150 -112 354 278 205 7 chr1 20890676 20890827 -221773526 - MIR SINE MIR -26 236 56 845 214 44 21 chr1 20891270 20891507 -221772846 - MIR SINE MIR -1 261 18 189 269 0 0 chr1 20891501 20891553 -221772800 + MIR SINE MIR 156 207 -55 * 223 208 338 0 chr1 20891677 20891754 -221772599 + L2 LINE L2 3191 3293 -20 347 164 0 0 chr1 20892140 20892207 -221772146 + AluJb SINE Alu 1 47 -253 * 368 151 0 0 chr1 20892202 20892255 -221772098 - AluS SINE Alu -20 280 228 1415 161 85 0 chr1 20892256 20892492 -221771861 + AluJb SINE Alu 38 293 -19 657 162 115 9 chr1 20892578 20892752 -221771601 - L1MD3 LINE L1 -4 7991 7588 262 289 44 33 chr1 20892761 20892851 -221771502 - MIR SINE MIR -151 111 21 404 323 81 50 chr1 20894065 20894263 -221770090 - MIR SINE MIR -12 250 47 185 0 0 39 chr1 20895187 20895213 -221769140 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1628 162 56 0 chr1 20895220 20895542 -221768811 - AluJo SINE Alu 0 342 6 422 288 72 97 chr1 20895562 20895863 -221768490 - L1ME4a LINE L1 -5 6116 5836 2162 111 3 0 chr1 20895863 20896152 -221768201 + AluSg1 SINE Alu 1 290 -19 422 288 72 97 chr1 20896152 20896437 -221767916 - L1ME4a LINE L1 -285 5836 5545 610 321 32 0 chr1 20897148 20897335 -221767018 + MIR SINE MIR 32 224 -38 602 264 62 70 chr1 20897357 20897615 -221766738 + MIR SINE MIR 1 256 -6 189 74 0 0 chr1 20897640 20897667 -221766686 + (CAT)n Simple_repeat Simple_repeat 3 29 0 431 209 40 125 chr1 20897688 20897858 -221766495 - L1MEc LINE L1 -5278 1118 935 2036 139 7 0 chr1 20897858 20898145 -221766208 - AluSx SINE Alu -23 289 1 431 209 40 125 chr1 20898145 20898175 -221766178 - L1MEc LINE L1 -5461 935 904 1622 160 20 67 chr1 20898175 20898257 -221766096 + MER44D DNA MER2_type 1 85 -2406 2010 128 18 0 chr1 20898257 20898558 -221765795 - AluSc SINE Alu 0 306 1 1622 160 20 67 chr1 20898558 20898830 -221765523 + MER44D DNA MER2_type 85 609 0 431 209 40 125 chr1 20898830 20898925 -221765428 - L1MEc LINE L1 -5492 904 847 305 224 0 0 chr1 20898901 20898968 -221765385 - L1ME LINE L1 -454 5736 5670 * 1805 141 0 85 chr1 20898971 20899114 -221765239 + AluJb SINE Alu 1 104 -208 2157 146 0 0 chr1 20899114 20899422 -221764931 + AluJb SINE Alu 1 308 -4 1805 141 0 85 chr1 20899422 20899597 -221764756 + AluJb SINE Alu 104 292 -20 642 264 125 5 chr1 20899906 20900114 -221764239 - MIR SINE MIR -3 259 27 198 271 62 0 chr1 20900158 20900206 -221764147 - MIR SINE MIR -84 178 128 1148 262 64 20 chr1 20900638 20901046 -221763307 + L1ME3A LINE L1 5727 6152 -18 1777 148 11 0 chr1 20901109 20901379 -221762974 + AluJo SINE Alu 21 293 -19 410 259 162 4 chr1 20901470 20901666 -221762687 + MIR SINE MIR 19 247 -15 333 331 0 44 chr1 20902012 20902148 -221762205 + MIR SINE MIR 118 247 -15 249 267 17 67 chr1 20902236 20902356 -221761997 - L2 LINE L2 -5 3267 3154 940 158 30 0 chr1 20903177 20903342 -221761011 - L1MB3 LINE L1 -215 5968 5799 2460 87 0 6 chr1 20903368 20903679 -221760674 + AluSc SINE Alu 1 309 0 300 163 68 95 chr1 20903692 20903810 -221760543 - L1MB7 LINE L1 -10 6174 6059 2128 148 0 0 chr1 20903810 20904114 -221760239 - AluJb SINE Alu -8 304 1 300 163 68 95 chr1 20904114 20904142 -221760211 - L1MB7 LINE L1 -125 6059 6032 2428 130 3 8 chr1 20904259 20904636 -221759717 + MLT1B LTR MaLR 16 390 0 232 179 0 0 chr1 20904877 20904916 -221759437 + MIR SINE MIR 116 154 -108 245 119 34 17 chr1 20905033 20905092 -221759261 - L1MB7 LINE L1 -77 6107 6048 2744 189 37 37 chr1 20905226 20905991 -221758362 - L1ME1 LINE L1 -189 5977 5214 1975 147 0 29 chr1 20905991 20906303 -221758050 - AluSx SINE Alu -9 303 1 2744 189 37 37 chr1 20906303 20906344 -221758009 - L1ME1 LINE L1 -952 5214 5175 2467 92 0 0 chr1 20906344 20906647 -221757706 - AluSq SINE Alu -10 303 1 2744 189 37 37 chr1 20906647 20906821 -221757532 - L1ME1 LINE L1 -991 5175 4992 2115 150 35 3 chr1 20906829 20907202 -221757151 - L1MB3 LINE L1 0 6183 5799 955 118 0 15 chr1 20907228 20907363 -221756990 + FLAM_C SINE Alu 1 133 0 1506 182 28 83 chr1 20907365 20907788 -221756565 - L1MB7 LINE L1 -10 6174 5775 2497 90 22 30 chr1 20907806 20908173 -221756180 - THE1B LTR MaLR 0 364 1 2279 171 20 3 chr1 20908173 20908778 -221755575 - L1MB7 LINE L1 -524 5650 5032 2155 138 0 3 chr1 20908779 20909084 -221755269 - AluSx SINE Alu -2 310 7 1296 154 0 47 chr1 20909096 20909356 -221754997 - AluJo SINE Alu 0 312 84 941 166 47 0 chr1 20909356 20909525 -221754828 - L1MB7 LINE L1 -1107 5039 4863 561 197 13 7 chr1 20909637 20909789 -221754564 + CT-rich Low_complexity Low_complexity 2 154 0 5155 224 43 35 chr1 20909792 20909974 -221754379 - L1ME1 LINE L1 -1212 4934 4755 1787 159 51 0 chr1 20909974 20910132 -221754221 - AluJo SINE Alu -22 290 111 189 0 0 0 chr1 20910132 20910153 -221754200 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1787 159 51 0 chr1 20910153 20910270 -221754083 - AluJo SINE Alu -201 111 1 5155 224 43 35 chr1 20910270 20911002 -221753351 - L1ME1 LINE L1 -1391 4755 4031 2356 98 7 0 chr1 20911002 20911307 -221753046 - AluSx SINE Alu -5 307 1 5155 224 43 35 chr1 20911307 20911753 -221752600 - L1ME1 LINE L1 -2115 4031 3556 1991 161 22 59 chr1 20911753 20912158 -221752195 + MLT1B LTR MaLR 1 390 0 5155 224 43 35 chr1 20912158 20912347 -221752006 - L1ME1 LINE L1 -2590 3556 3370 301 213 351 0 chr1 20912521 20912615 -221751738 - L1ME LINE L1 -266 5855 5729 757 167 0 8 chr1 20913687 20913813 -221750540 - FLAM_C SINE Alu -12 131 7 181 348 33 0 chr1 20913927 20914019 -221750334 - MIR SINE MIR -110 152 58 1433 204 45 48 chr1 20914229 20914627 -221749726 + MER31A LTR ERV1 89 485 0 409 232 17 57 chr1 20916810 20916987 -221747366 + (TG)n Simple_repeat Simple_repeat 2 171 0 191 111 0 22 chr1 20917010 20917055 -221747298 + (TG)n Simple_repeat Simple_repeat 2 45 0 234 222 0 0 chr1 20917401 20917446 -221746907 - MIR SINE MIR -109 153 109 337 237 54 0 chr1 20917810 20917903 -221746450 + MIR SINE MIR 45 142 -66 631 343 29 8 chr1 20918477 20918716 -221745637 + MIR SINE MIR 4 247 -15 201 328 80 24 chr1 20919476 20919601 -221744752 + L2 LINE L2 3180 3311 -2 389 256 90 15 chr1 20919908 20920041 -221744312 + MIR3 SINE MIR 34 176 -32 424 202 31 54 chr1 20920288 20920315 -221744038 + MER53 DNA DNA 1 27 -162 2050 127 0 10 chr1 20920315 20920629 -221743724 + AluSx SINE Alu 1 311 -1 424 202 31 54 chr1 20920629 20920730 -221743623 + MER53 DNA DNA 27 126 -63 23 0 0 0 chr1 20920741 20920764 -221743589 + AT_rich Low_complexity Low_complexity 1 23 0 243 146 31 167 chr1 20920771 20920805 -221743548 + MER53 DNA DNA 95 132 -57 2168 108 0 0 chr1 20920805 20921100 -221743253 - AluSc SINE Alu -14 295 1 243 146 31 167 chr1 20921100 20921125 -221743228 + MER53 DNA DNA 132 159 -30 252 0 0 0 chr1 20921125 20921153 -221743200 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 1620 150 25 4 chr1 20921153 20921427 -221742926 - AluJo SINE Alu -32 280 1 243 146 31 167 chr1 20921427 20921461 -221742892 + MER53 DNA DNA 157 177 -12 228 289 41 21 chr1 20921597 20921677 -221742676 - MER5A DNA MER1_type -83 106 25 395 266 58 53 chr1 20921677 20921865 -221742488 + MIR3 SINE MIR 4 192 -16 837 194 11 33 chr1 20922647 20922827 -221741526 + MER5A DNA MER1_type 5 180 -9 2353 80 0 3 chr1 20922967 20923269 -221741084 - AluSq SINE Alu -11 302 2 254 288 14 0 chr1 20923377 20923450 -221740903 + MIR3 SINE MIR 83 156 -52 571 241 167 0 chr1 20923451 20923613 -221740740 - MER5A DNA MER1_type 0 189 1 2331 85 3 0 chr1 20926257 20926563 -221737790 - AluSq SINE Alu -6 307 1 2630 39 0 0 chr1 20927010 20927321 -221737032 - AluY SINE Alu 0 311 1 518 274 34 34 chr1 20928214 20928422 -221735931 + MIR SINE MIR 20 227 -35 223 170 0 21 chr1 20928615 20928662 -221735691 + G-rich Low_complexity Low_complexity 6 51 0 22 0 0 0 chr1 20928954 20928976 -221735377 + AT_rich Low_complexity Low_complexity 1 22 0 2211 75 0 41 chr1 20928985 20929304 -221735049 + AluY SINE Alu 1 306 -5 232 258 32 0 chr1 20929415 20929477 -221734876 - MIR SINE MIR -41 221 158 356 273 8 61 chr1 20929477 20929609 -221734744 + LTR2 LTR ERV1 1 125 -324 874 217 0 5 chr1 20929657 20929841 -221734512 + LTR2 LTR ERV1 266 448 -1 14000 179 20 14 chr1 20929842 20932337 -221732016 + HERVE LTR ERV1 1 2512 -5301 21115 137 2 10 chr1 20932337 20935502 -221728851 + HERVE LTR ERV1 2686 5822 -1991 563 176 0 0 chr1 20935532 20935623 -221728730 + HERVE LTR ERV1 5915 6005 -1808 278 190 52 0 chr1 20935626 20935684 -221728669 + Harlequin LTR ERV1 5468 5528 -1368 * 448 104 0 0 chr1 20935682 20935749 -221728604 + Harlequin LTR ERV1 6829 6895 -1 424 266 18 71 chr1 20935749 20935918 -221728435 + LTR2 LTR ERV1 1 160 -289 * 772 166 0 152 chr1 20935914 20936131 -221728222 + LTR2 LTR ERV1 266 449 0 326 274 171 8 chr1 20936131 20936248 -221728105 - MIR SINE MIR -100 162 27 309 304 63 38 chr1 20936283 20936441 -221727912 + MIR3 SINE MIR 2 163 -45 255 256 50 33 chr1 20936413 20936534 -221727819 - L2 LINE L2 -190 3123 3001 * 385 242 95 33 chr1 20936555 20936766 -221727587 - L2 LINE L2 -559 2755 2532 298 257 169 7 chr1 20936824 20936972 -221727381 - L2 LINE L2 -766 2548 2377 234 332 49 58 chr1 20937000 20937223 -221727130 + L2 LINE L2 2951 3171 -101 2019 125 0 0 chr1 20937473 20937760 -221726593 + AluSx SINE Alu 1 287 -25 378 231 0 22 chr1 20938272 20938363 -221725990 + L2 LINE L2 3182 3270 -2 2049 244 62 2 chr1 20938536 20939033 -221725320 - MLT1H LTR MaLR -7 542 16 252 327 38 44 chr1 20939166 20939325 -221725028 + L2 LINE L2 3096 3253 -60 432 260 0 0 chr1 20939812 20939958 -221724395 + (TG)n Simple_repeat Simple_repeat 2 147 0 866 325 136 20 chr1 20940131 20941061 -221723292 + L2 LINE L2 2260 3313 0 605 236 6 0 chr1 20941189 20941363 -221722990 + (TG)n Simple_repeat Simple_repeat 2 176 0 247 135 269 0 chr1 20941461 20941513 -221722840 + MIR SINE MIR 84 149 -113 243 353 6 19 chr1 20942124 20942280 -221722073 + CT-rich Low_complexity Low_complexity 6 159 0 1003 306 141 33 chr1 20942639 20943552 -221720801 + L2 LINE L2 2125 3235 -78 281 309 34 14 chr1 20943644 20943795 -221720558 + MIR SINE MIR 31 143 -65 282 270 135 0 chr1 20943797 20943908 -221720445 - L2 LINE L2 0 3272 3147 223 296 28 14 chr1 20943947 20944018 -221720335 - L2 LINE L2 -78 3194 3123 2017 133 3 7 chr1 20944691 20945000 -221719353 - AluJo SINE Alu -4 308 1 405 276 122 0 chr1 20945166 20945289 -221719064 - MIR SINE MIR -12 250 113 385 308 66 5 chr1 20945522 20945728 -221718625 + MIR SINE MIR 34 261 -1 217 300 0 0 chr1 20945712 20945762 -221718591 - MIR SINE MIR -101 161 112 * 347 289 18 9 chr1 20945835 20945949 -221718404 + MIR3 SINE MIR 91 205 -3 * 376 304 54 0 chr1 20945935 20946047 -221718306 + L2 LINE L2 3147 3264 -8 212 259 19 0 chr1 20946087 20946141 -221718212 - MIR SINE MIR -130 78 24 2632 26 0 7 chr1 20947273 20947583 -221716770 - AluY SINE Alu -3 308 1 226 280 13 40 chr1 20947870 20947945 -221716408 + L2 LINE L2 3232 3304 -9 229 175 0 0 chr1 20948048 20948088 -221716265 - L2 LINE L2 -12 3301 3262 296 314 82 48 chr1 20948524 20948547 -221715806 - MIR SINE MIR -3 259 238 1565 179 6 28 chr1 20948547 20948866 -221715487 + AluJo SINE Alu 1 312 0 296 314 82 48 chr1 20948866 20949049 -221715304 - MIR SINE MIR -24 238 46 368 318 32 8 chr1 20949051 20949177 -221715176 - L2 LINE L2 0 3272 3144 398 345 91 18 chr1 20949439 20949659 -221714694 + MIR SINE MIR 21 256 -6 767 224 79 0 chr1 20950128 20950293 -221714060 - MER45A DNA AcHobo 0 178 1 331 213 0 0 chr1 20950294 20950355 -221713998 - MER45A DNA AcHobo -117 61 1 344 312 9 0 chr1 20951179 20951288 -221713065 + L1ME LINE L1 5671 5780 -341 2281 82 0 29 chr1 20951423 20951739 -221712614 - AluSq SINE Alu -6 307 1 315 306 16 67 chr1 20951761 20951954 -221712399 + HAL1 LINE L1 2325 2507 0 190 327 0 0 chr1 20953378 20953430 -221710923 + MIR SINE MIR 102 153 -109 424 264 85 0 chr1 20953453 20953582 -221710771 - MIR SINE MIR -44 218 79 181 319 72 0 chr1 20954389 20954458 -221709895 + L2 LINE L2 3200 3273 -40 411 291 29 63 chr1 20954497 20954703 -221709650 + LTR16A LTR ERVL 97 295 -155 225 0 0 0 chr1 20954733 20954758 -221709595 + (TG)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr1 20955042 20955065 -221709288 + (TG)n Simple_repeat Simple_repeat 2 24 0 228 355 0 0 chr1 20955075 20955213 -221709140 + (TCTCTG)n Simple_repeat Simple_repeat 6 143 0 297 0 0 0 chr1 20955256 20955289 -221709064 + (TG)n Simple_repeat Simple_repeat 1 33 0 247 248 104 40 chr1 20955648 20955773 -221708580 + LTR16A1 LTR ERVL 319 451 -6 240 253 36 36 chr1 20955824 20955907 -221708446 - L2 LINE L2 -183 3089 3007 552 246 42 9 chr1 20955936 20956121 -221708232 - MIR SINE MIR -65 143 3 318 256 0 23 chr1 20956481 20956567 -221707786 + L2 LINE L2 3197 3280 -33 536 262 47 7 chr1 20956579 20956728 -221707625 - MIR SINE MIR -1 261 107 292 319 89 47 chr1 20956848 20957039 -221707314 - MIR SINE MIR -48 214 16 2044 120 0 128 chr1 20957705 20958104 -221706249 + MER7A DNA MER2_type 1 346 0 246 311 107 29 chr1 20958521 20958624 -221705729 - L2 LINE L2 -21 3251 3141 636 263 78 11 chr1 20958670 20958849 -221705504 - MIR SINE MIR -48 214 24 265 291 114 52 chr1 20959133 20959404 -221704949 - L2 LINE L2 -174 3098 2811 312 27 0 0 chr1 20959712 20959749 -221704604 + (CA)n Simple_repeat Simple_repeat 1 37 0 389 320 39 46 chr1 20960133 20960392 -221703961 - L2 LINE L2 -1764 1550 1294 1679 134 65 20 chr1 20960392 20960684 -221703669 + AluJb SINE Alu 1 305 -7 183 333 90 11 chr1 20961182 20961371 -221702982 - MIR3 SINE MIR -2 206 3 198 91 0 0 chr1 20961517 20961550 -221702803 + (CCCGA)n Simple_repeat Simple_repeat 1 33 0 392 294 7 126 chr1 20964435 20964721 -221699632 - MIR3 SINE MIR -10 252 1 889 150 0 0 chr1 20965138 20965278 -221699075 + AluSg/x SINE Alu 173 312 0 537 235 52 7 chr1 20965334 20965470 -221698883 + MIR3 SINE MIR 4 145 -63 1028 182 31 0 chr1 20965494 20965686 -221698667 + MER58 DNA MER1_type 1 198 -143 192 287 132 22 chr1 20965774 20965910 -221698443 + L2 LINE L2 3113 3263 -50 426 227 110 19 chr1 20970872 20971026 -221693327 - L2 LINE L2 -614 2700 2533 1924 145 3 3 chr1 20972005 20972315 -221692038 - AluSx SINE Alu 0 312 3 614 266 180 61 chr1 20972379 20972554 -221691799 - L2 LINE L2 -4 3309 3156 2182 61 51 3 chr1 20972554 20972850 -221691503 + AluSg SINE Alu 1 310 0 614 266 180 61 chr1 20972850 20973384 -221690969 - L2 LINE L2 -157 3156 2534 550 241 118 76 chr1 20973561 20974035 -221690318 - L1ME4a LINE L1 -37 6084 5591 219 218 91 18 chr1 20974522 20974577 -221689776 - L2 LINE L2 -75 3197 3139 350 336 110 7 chr1 20975413 20975559 -221688794 + MER5B DNA MER1_type 18 178 0 205 278 19 0 chr1 20975559 20975612 -221688741 + MIR3 SINE MIR 148 201 -7 225 333 137 20 chr1 20975858 20976011 -221688342 + MIR SINE MIR 92 262 0 415 264 147 8 chr1 20976049 20976178 -221688175 - L2 LINE L2 -1 3271 3125 436 195 58 0 chr1 20976210 20976297 -221688056 + L2 LINE L2 3222 3313 0 205 358 55 28 chr1 20976398 20976507 -221687846 + L2 LINE L2 3132 3243 -29 325 250 190 0 chr1 20977169 20977269 -221687084 - L2 LINE L2 -1 3271 3153 188 312 96 24 chr1 20977514 20977639 -221686714 + L3 LINE CR1 1432 1565 -12 413 274 126 29 chr1 20978148 20978323 -221686030 + L2 LINE L2 3104 3295 -18 568 256 40 62 chr1 20978545 20978772 -221685581 + MIR SINE MIR 5 226 -36 447 312 64 0 chr1 20979437 20979594 -221684759 - MIR SINE MIR -48 214 48 2285 80 0 0 chr1 20980308 20980609 -221683744 + AluY SINE Alu 1 301 -10 361 304 164 26 chr1 20980702 20981014 -221683339 - L2 LINE L2 -7 3265 2911 193 250 25 0 chr1 20981651 20981691 -221682662 - L2 LINE L2 -11 3261 3221 738 188 0 15 chr1 20981711 20981871 -221682482 - FLAM_A SINE Alu 0 133 1 932 178 0 12 chr1 20982061 20982224 -221682129 - FRAM SINE Alu -14 162 2 2039 121 0 29 chr1 20982239 20982554 -221681799 - AluSx SINE Alu -6 306 1 606 62 0 12 chr1 20983111 20983191 -221681162 - MADE1 DNA Mariner 0 80 2 1188 174 5 14 chr1 20983497 20983715 -221680638 + AluJo SINE Alu 82 297 -15 803 95 26 0 chr1 20984325 20984441 -221679912 + FLAM_C SINE Alu 1 119 -24 336 271 136 7 chr1 20985722 20985877 -221678476 - MIR3 SINE MIR -20 188 14 256 321 76 15 chr1 20985891 20985929 -221678424 + L2 LINE L2 3175 3209 -104 1866 148 6 6 chr1 20985929 20986240 -221678113 - AluJo SINE Alu -1 311 1 256 321 76 15 chr1 20986240 20986332 -221678021 + L2 LINE L2 3209 3313 0 252 277 14 113 chr1 20988342 20988483 -221675870 + MIR3 SINE MIR 52 178 -30 198 0 0 0 chr1 20988491 20988513 -221675840 + (A)n Simple_repeat Simple_repeat 1 22 0 2059 76 38 17 chr1 20989433 20989723 -221674630 + AluSp SINE Alu 1 296 -17 899 249 56 13 chr1 20991672 20991905 -221672448 + MIR SINE MIR 13 255 -7 726 293 53 59 chr1 20991955 20992296 -221672057 + MLT1I LTR MaLR 71 409 0 1736 152 6 38 chr1 20992463 20992779 -221671574 - AluJo SINE Alu -6 306 1 1508 184 0 7 chr1 20992874 20993151 -221671202 + AluJo SINE Alu 24 298 -14 260 206 93 62 chr1 20993813 20993910 -221670443 + MIR3 SINE MIR 106 205 -3 1799 169 0 0 chr1 20994000 20994295 -221670058 - AluJb SINE Alu -17 295 1 269 291 36 36 chr1 20994537 20994702 -221669651 - L1ME4a LINE L1 -14 6107 5943 1669 96 0 0 chr1 20994784 20995003 -221669350 + AluSq SINE Alu 1 219 -94 742 133 0 0 chr1 20995003 20995137 -221669216 + AluSp/q SINE Alu 188 321 0 400 263 81 6 chr1 20995156 20995316 -221669037 - L1ME4a LINE L1 -303 5818 5647 552 261 25 53 chr1 20996247 20996407 -221667946 - MIR SINE MIR -2 260 103 2289 82 0 0 chr1 20996407 20996701 -221667652 + AluSq SINE Alu 1 294 -19 552 261 25 53 chr1 20996701 20996787 -221667566 - MIR SINE MIR -159 103 16 272 289 158 9 chr1 20997686 20997800 -221666553 - L2 LINE L2 -1 3271 3141 1073 320 91 37 chr1 20998427 20999209 -221665144 + L2 LINE L2 2034 2857 -457 234 338 0 0 chr1 20999529 20999603 -221664750 + L2 LINE L2 3231 3304 -9 2687 102 40 26 chr1 21001220 21001640 -221662713 - MSTA LTR MaLR -2 426 1 338 270 245 19 chr1 21002153 21002312 -221662041 + MIR SINE MIR 17 211 -51 1944 109 7 3 chr1 21002946 21003278 -221661075 + AluSx SINE Alu 1 333 0 238 335 52 0 chr1 21003445 21003600 -221660753 - L2 LINE L2 -1195 2119 1957 * 597 273 95 30 chr1 21003595 21003826 -221660527 - MIR SINE MIR -2 260 15 846 270 22 4 chr1 21003895 21004121 -221660232 - LTR16A LTR ERVL -7 443 214 383 314 73 0 chr1 21004299 21004423 -221659930 + MIR SINE MIR 45 177 -85 390 235 133 87 chr1 21005174 21005294 -221659059 - MIR SINE MIR -6 256 122 2038 100 7 27 chr1 21005294 21005595 -221658758 + AluSx SINE Alu 1 295 -17 390 235 133 87 chr1 21005595 21005670 -221658683 - MIR SINE MIR -140 122 52 210 263 112 20 chr1 21006354 21006446 -221657907 + MIR SINE MIR 47 145 -63 1543 231 54 39 chr1 21006582 21006711 -221657642 - MER113 DNA MER1_type? -51 470 344 1976 147 0 0 chr1 21006711 21007011 -221657342 - AluSx SINE Alu -12 300 1 1543 231 54 39 chr1 21007011 21007344 -221657009 - MER113 DNA MER1_type? -177 344 1 2154 115 0 10 chr1 21007557 21007861 -221656492 + AluSx SINE Alu 1 301 -11 3858 131 69 29 chr1 21007881 21008880 -221655473 - MER11A LTR ERVK 0 1266 1 253 341 3 0 chr1 21008890 21008960 -221655393 + MIR SINE MIR 40 111 -97 673 276 40 27 chr1 21008979 21009204 -221655149 - MIR SINE MIR -1 261 34 198 268 171 12 chr1 21009204 21009286 -221655067 + MIR SINE MIR 156 250 -12 884 303 38 58 chr1 21011884 21012329 -221652024 + MLT1K LTR MaLR 67 502 -86 243 388 23 0 chr1 21012402 21012531 -221651822 + L2 LINE L2 2713 2844 -470 5911 157 2 4 chr1 21012940 21013859 -221650494 + MER49 LTR ERV1 7 923 0 426 281 118 31 chr1 21013928 21013944 -221650409 - L2 LINE L2 -411 2903 2890 2280 75 0 13 chr1 21013944 21014249 -221650104 + AluY SINE Alu 1 301 -10 426 281 118 31 chr1 21014249 21014460 -221649893 - L2 LINE L2 -424 2890 2656 3764 129 81 94 chr1 21014498 21014701 -221649652 + MER4D LTR ERV1 9 213 -659 2083 125 0 0 chr1 21014701 21014996 -221649357 + AluSx SINE Alu 1 295 -17 3764 129 81 94 chr1 21014996 21015102 -221649251 + MER4D LTR ERV1 213 319 -553 2011 107 0 0 chr1 21015102 21015398 -221648955 - AluSx SINE Alu 0 307 12 3764 129 81 94 chr1 21015398 21015959 -221648394 + MER4D LTR ERV1 319 870 -2 649 285 144 52 chr1 21015959 21016425 -221647928 - L2 LINE L2 -695 2619 2111 184 268 18 18 chr1 21016536 21016592 -221647761 + L2 LINE L2 3217 3272 0 235 332 89 74 chr1 21016800 21016990 -221647363 - MIR SINE MIR -50 212 20 181 297 99 18 chr1 21017698 21017809 -221646544 - L2 LINE L2 -800 2514 2395 190 220 0 51 chr1 21018404 21018463 -221645890 + MIR3 SINE MIR 117 172 -36 411 250 275 25 chr1 21018988 21019198 -221645155 + MIR SINE MIR 2 261 -1 944 245 86 99 chr1 21019582 21019813 -221644540 + MLT1H LTR MaLR 1 233 -316 637 204 9 0 chr1 21019813 21019926 -221644427 + MER81 DNA DNA 1 114 0 944 245 86 99 chr1 21019926 21020250 -221644103 + MLT1H LTR MaLR 233 549 0 697 329 101 29 chr1 21020346 21020810 -221643543 - L2 LINE L2 -1 3271 2783 1656 200 84 14 chr1 21020935 21021305 -221643048 - MSTD LTR MaLR 0 396 1 604 269 83 37 chr1 21021732 21021974 -221642379 - L2 LINE L2 0 3313 3061 304 315 105 14 chr1 21022380 21022523 -221641830 + L2 LINE L2 2916 3071 -201 1044 263 63 72 chr1 21022523 21023047 -221641306 - MLT1H LTR MaLR 0 549 31 423 318 45 0 chr1 21023131 21023307 -221641046 + L2 LINE L2 3130 3313 0 3953 84 2 33 chr1 21023764 21024085 -221640268 + MER41A LTR ERV1 1 298 -256 1336 90 0 47 chr1 21024085 21024297 -221640056 + L1PA7 LINE L1 5953 6154 0 3953 84 2 33 chr1 21024297 21024547 -221639806 + MER41A LTR ERV1 298 554 0 399 320 66 35 chr1 21024590 21024849 -221639504 + L2 LINE L2 2816 3082 -190 250 246 130 0 chr1 21025001 21025070 -221639283 + MIR SINE MIR 182 259 -3 2219 182 35 45 chr1 21025336 21025846 -221638507 + MLT1D LTR MaLR 1 505 0 186 227 0 0 chr1 21025869 21025913 -221638440 + GA-rich Low_complexity Low_complexity 1 44 0 4856 84 9 0 chr1 21026643 21027288 -221637065 - L1PA10 LINE L1 -5 6163 5513 1539 71 22 0 chr1 21027294 21027520 -221636833 + L1PA10 LINE L1 5254 5484 -684 442 272 84 94 chr1 21027542 21027851 -221636502 + L2 LINE L2 2952 3257 -56 2114 147 2 91 chr1 21027903 21028331 -221636022 + MLT1B LTR MaLR 1 390 0 580 260 75 35 chr1 21028405 21028858 -221635495 - LTR33 LTR ERVL -16 505 1 266 239 194 75 chr1 21029228 21029302 -221635051 - MIR SINE MIR -8 254 190 731 189 0 8 chr1 21029302 21029429 -221634924 + FLAM_A SINE Alu 2 127 -6 266 239 194 75 chr1 21029429 21029488 -221634865 - MIR SINE MIR -72 190 105 591 249 96 35 chr1 21029618 21029847 -221634506 - MIR SINE MIR 0 262 20 243 139 0 0 chr1 21030063 21030099 -221634254 - MER20 DNA MER1_type -2 217 182 1988 87 42 8 chr1 21030102 21030391 -221633962 - AluSx SINE Alu 0 312 21 454 195 23 62 chr1 21030835 21030963 -221633390 - MER20 DNA MER1_type -39 180 58 345 330 28 51 chr1 21031156 21031332 -221633021 + MIR SINE MIR 20 191 -71 204 336 30 103 chr1 21031911 21032143 -221632210 + L2 LINE L2 3016 3230 -42 497 267 52 98 chr1 21032144 21032624 -221631729 + MLT1J LTR MaLR 3 460 -51 2213 138 0 0 chr1 21032817 21033121 -221631232 - AluSq SINE Alu -7 306 3 222 335 71 41 chr1 21033347 21033517 -221630836 - L2 LINE L2 -83 3189 3015 351 303 118 10 chr1 21033530 21033725 -221630628 + MIR SINE MIR 47 262 0 293 258 15 0 chr1 21034184 21034250 -221630103 + MIR3 SINE MIR 94 160 -48 705 211 41 35 chr1 21034251 21034422 -221629931 + MER5B DNA MER1_type 2 173 -5 455 331 11 11 chr1 21034459 21034634 -221629719 + MIR SINE MIR 68 242 -20 418 309 29 22 chr1 21034975 21035111 -221629242 - MIR3 SINE MIR -27 181 45 318 26 0 0 chr1 21035113 21035152 -221629201 + (A)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr1 21035168 21035189 -221629164 + AT_rich Low_complexity Low_complexity 1 21 0 438 239 68 34 chr1 21035712 21035829 -221628524 + MIR SINE MIR 142 262 0 874 307 116 18 chr1 21035854 21036310 -221628043 - LTR33 LTR ERVL 0 521 21 767 273 93 5 chr1 21036818 21037034 -221627319 + MIR SINE MIR 28 262 0 279 250 148 9 chr1 21037037 21037145 -221627208 + L2 LINE L2 3145 3267 -5 * 436 299 37 8 chr1 21037139 21037273 -221627080 - MIR SINE MIR -94 168 31 824 175 127 0 chr1 21037290 21037456 -221626897 - MER5A DNA MER1_type -2 187 1 701 113 0 16 chr1 21037832 21037956 -221626397 + (TTCC)n Simple_repeat Simple_repeat 1 122 0 2317 131 0 0 chr1 21037995 21038307 -221626046 - AluSx SINE Alu 0 312 1 365 294 20 0 chr1 21038786 21038888 -221625465 - MLT1L LTR MaLR -4 611 508 539 309 52 0 chr1 21039009 21039203 -221625150 + MIR SINE MIR 43 246 -16 2276 177 78 9 chr1 21039543 21039979 -221624374 - MLT1C LTR MaLR -1 466 1 376 307 53 7 chr1 21039999 21040149 -221624204 + L2 LINE L2 2895 3051 -221 544 217 191 0 chr1 21040326 21040478 -221623875 + MER5A DNA MER1_type 9 189 0 * 633 241 40 23 chr1 21040478 21040650 -221623703 + MIR SINE MIR 88 262 0 559 300 27 25 chr1 21041169 21041379 -221622974 - MIR SINE MIR -24 238 30 2176 125 0 7 chr1 21041560 21041865 -221622488 - AluSx SINE Alu -3 309 7 488 324 0 7 chr1 21042142 21042287 -221622066 - MIR SINE MIR -106 156 13 229 157 0 0 chr1 21042679 21042730 -221621623 + MER113 DNA MER1_type? 63 113 -408 351 221 176 43 chr1 21042920 21043084 -221621269 - MIR SINE MIR -61 147 16 2549 47 3 6 chr1 21043272 21043590 -221620763 - L1PA5 LINE L1 0 6154 5838 635 262 18 21 chr1 21044540 21044767 -221619586 + MLT1G1 LTR MaLR 11 239 -310 388 103 206 0 chr1 21044828 21044896 -221619457 + MLT1B LTR MaLR 21 81 -293 1156 210 30 34 chr1 21044956 21045251 -221619102 + MLT1B LTR MaLR 97 390 0 361 298 32 0 chr1 21045359 21045453 -221618900 + L2 LINE L2 2514 2610 -704 244 288 27 77 chr1 21045623 21045845 -221618508 - MLT1I LTR MaLR -196 213 43 670 276 114 35 chr1 21045963 21046217 -221618136 + L2 LINE L2 2696 2984 -288 2627 113 6 3 chr1 21046217 21046580 -221617773 + THE1B LTR MaLR 1 364 0 670 276 114 35 chr1 21046580 21046689 -221617664 + L2 LINE L2 2984 3083 -189 2508 126 5 0 chr1 21046709 21047091 -221617262 + MLT1B LTR MaLR 1 384 -6 372 230 246 8 chr1 21047151 21047277 -221617076 + L2 LINE L2 3117 3272 0 215 333 9 9 chr1 21047841 21047946 -221616407 + CT-rich Low_complexity Low_complexity 1 105 0 335 266 169 8 chr1 21048586 21048710 -221615643 + MIR SINE MIR 117 260 -2 292 240 125 0 chr1 21049138 21049242 -221615111 + L2 LINE L2 3180 3296 -17 1113 135 0 2 chr1 21049242 21049765 -221614588 + (TGGA)n Simple_repeat Simple_repeat 1 521 0 227 345 27 9 chr1 21050018 21050128 -221614225 + MIR SINE MIR 114 225 -37 291 253 87 30 chr1 21050423 21050556 -221613797 + MIR SINE MIR 61 201 -61 2557 62 0 3 chr1 21050569 21050877 -221613476 + AluY SINE Alu 1 307 -4 180 176 0 0 chr1 21051091 21051125 -221613228 + GA-rich Low_complexity Low_complexity 2 35 0 650 283 181 26 chr1 21051418 21051971 -221612382 + L2 LINE L2 2632 3272 0 444 302 189 6 chr1 21052589 21052758 -221611595 + MIR SINE MIR 7 206 -56 422 278 111 7 chr1 21053101 21053245 -221611108 - MIR SINE MIR -32 230 72 952 115 0 0 chr1 21053779 21053909 -221610444 - AluSg/x SINE Alu 0 309 180 2826 127 28 12 chr1 21054098 21054523 -221609830 - MSTB1 LTR MaLR 0 432 1 342 154 0 0 chr1 21054902 21054954 -221609399 - L2 LINE L2 0 3313 3262 397 324 148 15 chr1 21054955 21055460 -221608893 - L2 LINE L2 -249 3064 2497 204 242 0 0 chr1 21055858 21055909 -221608444 - MIR SINE MIR -87 121 70 233 365 42 10 chr1 21056085 21056181 -221608172 - L2 LINE L2 -32 3240 3142 401 219 76 29 chr1 21056629 21056734 -221607619 - L2 LINE L2 -9 3304 3195 583 311 189 40 chr1 21056759 21057712 -221606641 + L2 LINE L2 2202 3308 -5 248 316 89 0 chr1 21057735 21057814 -221606539 + MIR SINE MIR 161 246 -16 384 250 47 39 chr1 21058461 21058589 -221605764 + MIR SINE MIR 31 159 -103 532 311 146 30 chr1 21058649 21059314 -221605039 - L2 LINE L2 0 3313 2584 584 235 60 6 chr1 21060021 21060187 -221604166 - MER97c DNA MER1_type? -912 178 4 461 328 110 58 chr1 21060331 21061004 -221603349 - L2 LINE L2 0 3272 2563 2168 119 60 26 chr1 21061049 21061401 -221602952 + THE1B LTR MaLR 1 364 0 841 267 137 73 chr1 21061405 21061910 -221602443 - MLT1H LTR MaLR 0 549 13 192 40 0 0 chr1 21061968 21061993 -221602360 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 248 263 17 0 chr1 21062589 21062657 -221601696 + MIR SINE MIR 85 142 -66 828 226 80 10 chr1 21062721 21062920 -221601433 - MIR SINE MIR -48 214 2 1817 195 36 55 chr1 21063017 21063061 -221601292 + MLT1C LTR MaLR 1 44 -423 2813 62 23 13 chr1 21063061 21063445 -221600908 - L1PA8 LINE L1 -2 6170 5783 1817 195 36 55 chr1 21063445 21063876 -221600477 + MLT1C LTR MaLR 44 467 0 558 299 35 35 chr1 21064308 21064539 -221599814 + MIR SINE MIR 4 234 -28 327 306 111 7 chr1 21065298 21065442 -221598911 + MIR SINE MIR 34 192 -70 431 259 86 7 chr1 21065536 21065675 -221598678 + MIR SINE MIR 43 192 -70 311 127 16 0 chr1 21066686 21066749 -221597604 + (TG)n Simple_repeat Simple_repeat 2 65 0 482 119 12 0 chr1 21066849 21066933 -221597420 + (TC)n Simple_repeat Simple_repeat 1 85 0 209 258 48 0 chr1 21066937 21066999 -221597354 + CT-rich Low_complexity Low_complexity 6 70 0 184 172 35 0 chr1 21067014 21067072 -221597281 + CT-rich Low_complexity Low_complexity 1 60 0 455 232 36 0 chr1 21067568 21067736 -221596617 + CT-rich Low_complexity Low_complexity 2 175 0 1904 92 96 0 chr1 21069988 21070275 -221594078 - AluSp SINE Alu 0 312 1 1110 83 0 0 chr1 21070277 21070409 -221593944 - AluSp SINE Alu -181 132 1 218 299 52 0 chr1 21070416 21070493 -221593860 - MIR SINE MIR -102 160 80 2256 112 7 0 chr1 21071387 21071683 -221592670 - AluSq SINE Alu -15 298 1 503 258 0 16 chr1 21072510 21072638 -221591715 - L2 LINE L2 -1 3312 3187 658 235 73 17 chr1 21072866 21073045 -221591308 - MLT1I LTR MaLR -188 221 33 236 252 72 45 chr1 21073339 21073450 -221590903 + MIR SINE MIR 99 212 -50 1857 158 16 13 chr1 21073517 21073827 -221590526 - AluJo SINE Alu -1 311 1 431 285 52 12 chr1 21074056 21074228 -221590125 - MIR SINE MIR -35 227 49 455 302 61 24 chr1 21074427 21074639 -221589714 + MIR SINE MIR 5 224 -38 2142 151 0 0 chr1 21074912 21075224 -221589129 - AluSx SINE Alu 0 312 1 586 278 72 10 chr1 21075555 21075749 -221588604 + MIR SINE MIR 18 223 -39 771 301 13 0 chr1 21076035 21076264 -221588089 + MIR SINE MIR 31 262 0 271 315 75 34 chr1 21076807 21076953 -221587400 - MIR SINE MIR -3 259 108 194 146 195 0 chr1 21077954 21077995 -221586358 - L2 LINE L2 -3 3310 3262 337 250 52 0 chr1 21078076 21078172 -221586181 + L2 LINE L2 3208 3308 -5 239 318 90 26 chr1 21078260 21078449 -221585904 - L2 LINE L2 -222 3050 2850 340 206 0 0 chr1 21079043 21079111 -221585242 - MIR SINE MIR -132 130 63 187 203 81 40 chr1 21079412 21079486 -221584867 + MIR3 SINE MIR 13 89 -119 265 317 137 70 chr1 21079579 21080054 -221584299 - L2 LINE L2 -26 3246 2746 243 146 0 0 chr1 21080073 21080114 -221584239 + (TG)n Simple_repeat Simple_repeat 1 41 0 532 314 120 0 chr1 21080283 21080474 -221583879 + MIR SINE MIR 1 214 -48 917 223 40 32 chr1 21080480 21080727 -221583626 - L2 LINE L2 -1 3312 3064 187 341 16 8 chr1 21081111 21081237 -221583116 - L2 LINE L2 -2990 324 198 670 270 81 54 chr1 21081467 21081800 -221582553 - L2 LINE L2 0 3313 2972 353 284 27 40 chr1 21081865 21082013 -221582340 - L2 LINE L2 -548 2766 2621 295 74 0 93 chr1 21082140 21082194 -221582159 - L2 LINE L2 0 3313 3265 353 209 270 0 chr1 21083002 21083117 -221581236 + MIR SINE MIR 117 262 0 254 317 100 17 chr1 21083146 21083266 -221581087 + L2 LINE L2 3142 3271 -1 2145 116 24 24 chr1 21083388 21083758 -221580595 - L1PA16 LINE L1 -1 6165 5796 490 301 88 48 chr1 21084906 21085428 -221578925 - L2 LINE L2 -227 3045 2498 441 0 0 0 chr1 21085428 21085477 -221578876 + (TG)n Simple_repeat Simple_repeat 2 50 0 490 301 88 48 chr1 21085477 21085569 -221578784 - L2 LINE L2 -774 2498 2411 218 256 115 0 chr1 21085627 21085705 -221578648 - MIR3 SINE MIR -11 197 111 286 323 42 0 chr1 21085803 21085899 -221578454 + MIR SINE MIR 49 148 -60 407 250 22 0 chr1 21086311 21086403 -221577950 + MIR SINE MIR 58 151 -57 2181 124 0 0 chr1 21086497 21086788 -221577565 - AluJb SINE Alu -16 296 6 287 53 0 0 chr1 21087511 21087549 -221576804 - MIR SINE MIR -61 147 110 369 229 229 7 chr1 21087643 21087787 -221576566 + MER5A DNA MER1_type 13 188 -1 493 278 43 19 chr1 21087830 21087992 -221576361 - MIR SINE MIR -69 193 28 268 322 23 0 chr1 21088075 21088162 -221576191 + Charlie8 DNA MER1_type 110 198 -2219 294 258 178 25 chr1 21088612 21088764 -221575589 + MIR SINE MIR 17 191 -56 198 388 9 9 chr1 21088803 21088919 -221575434 + MIR SINE MIR 1 116 -146 248 174 0 0 chr1 21089025 21089071 -221575282 - MIR SINE MIR -76 132 87 208 244 0 0 chr1 21089106 21089151 -221575202 - MIR SINE MIR -118 90 46 270 314 108 27 chr1 21089628 21089851 -221574502 + MIR SINE MIR 2 242 -20 560 318 75 43 chr1 21090386 21090760 -221573593 - L2 LINE L2 -5 3308 2923 488 278 106 26 chr1 21091017 21091324 -221573029 - L2 LINE L2 -184 3129 2791 316 324 63 0 chr1 21091637 21091748 -221572605 + L1MC/D LINE L1 5470 5587 -2198 258 289 189 6 chr1 21092176 21092335 -221572018 - MIR SINE MIR -19 243 56 311 289 18 89 chr1 21092371 21092437 -221571916 + MIR SINE MIR 34 103 -159 2065 84 4 0 chr1 21092437 21092700 -221571653 + AluY SINE Alu 42 305 -6 311 289 18 89 chr1 21092700 21092858 -221571495 + MIR SINE MIR 103 242 -20 555 225 106 12 chr1 21093495 21093655 -221570698 - MER5B DNA MER1_type -3 175 1 315 228 168 0 chr1 21093892 21093993 -221570360 - MIR3 SINE MIR -21 187 70 374 235 17 42 chr1 21094596 21094715 -221569638 - MIR3 SINE MIR -7 201 86 189 217 33 50 chr1 21095092 21095152 -221569201 - MIR SINE MIR -83 125 67 839 319 158 12 chr1 21096758 21096825 -221567528 - L2 LINE L2 -87 3226 3170 2340 102 0 0 chr1 21096825 21097129 -221567224 + AluSc SINE Alu 1 304 -5 839 319 158 12 chr1 21097129 21097783 -221566570 - L2 LINE L2 -143 3170 2396 238 213 27 27 chr1 21097793 21097868 -221566485 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 274 265 157 0 chr1 21098232 21098334 -221566019 - MIR SINE MIR -26 236 119 563 253 59 12 chr1 21098527 21098697 -221565656 - MIR SINE MIR -62 200 23 447 298 64 11 chr1 21099357 21099566 -221564787 - MIR SINE MIR -6 256 38 297 341 59 15 chr1 21099657 21099792 -221564561 - L2 LINE L2 -20 3252 3112 385 293 82 30 chr1 21100536 21100712 -221563641 - MIR3 SINE MIR -7 201 17 293 330 10 10 chr1 21100805 21100908 -221563445 + MIR SINE MIR 47 149 -59 350 314 26 45 chr1 21100953 21101109 -221563244 - MER117 DNA MER1_type -34 163 11 207 0 0 0 chr1 21101982 21102005 -221562348 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1939 100 58 0 chr1 21102010 21102269 -221562084 - AluSg SINE Alu -36 274 1 313 270 9 52 chr1 21102288 21102403 -221561950 + MIR SINE MIR 65 174 -88 279 122 0 0 chr1 21102517 21102566 -221561787 + (CAT)n Simple_repeat Simple_repeat 2 50 0 698 299 19 5 chr1 21102671 21102882 -221561471 + MIR SINE MIR 25 238 -24 321 89 0 0 chr1 21103173 21103218 -221561135 + (TGG)n Simple_repeat Simple_repeat 1 45 0 249 159 0 0 chr1 21104046 21104090 -221560263 + GA-rich Low_complexity Low_complexity 4 47 0 622 227 0 8 chr1 21104157 21104289 -221560064 + FLAM_A SINE Alu 11 141 -1 727 310 122 5 chr1 21104395 21104772 -221559581 - L1ME4a LINE L1 -116 6005 5585 2034 110 0 38 chr1 21104808 21105099 -221559254 - AluSx SINE Alu -1 311 32 306 329 7 40 chr1 21105225 21105374 -221558979 - MIR3 SINE MIR -58 150 7 194 283 0 0 chr1 21106562 21106608 -221557745 - MIR SINE MIR -118 90 45 702 315 97 26 chr1 21106952 21107333 -221557020 - LTR16B LTR ERVL -24 440 33 325 250 12 12 chr1 21107554 21107634 -221556719 - MIR SINE MIR -58 150 71 * 420 247 25 70 chr1 21107622 21107716 -221556637 + MIR3 SINE MIR 55 142 -66 2098 120 0 7 chr1 21107716 21108070 -221556283 + AluSx SINE Alu 1 352 0 420 247 25 70 chr1 21108070 21108132 -221556221 + MIR3 SINE MIR 142 205 -3 401 306 10 67 chr1 21108680 21108748 -221555605 + MER5A DNA MER1_type 8 78 -111 1953 110 0 11 chr1 21108748 21109012 -221555341 + AluSx SINE Alu 37 297 -15 401 306 10 67 chr1 21109012 21109136 -221555217 + MER5A DNA MER1_type 78 189 0 668 237 73 17 chr1 21109529 21109706 -221554647 - Charlie8 DNA MER1_type -2132 285 99 309 333 31 56 chr1 21109950 21110049 -221554304 + L1M4 LINE L1 5510 5610 -574 2300 105 0 0 chr1 21110049 21110344 -221554009 + AluSx SINE Alu 1 295 -17 309 333 31 56 chr1 21110344 21110498 -221553855 + L1M4 LINE L1 5610 5756 -428 1730 151 13 30 chr1 21110546 21110851 -221553502 + AluJo SINE Alu 1 300 -12 2544 141 37 7 chr1 21110985 21111417 -221552936 - Tigger2 DNA MER2_type -1 2717 2273 428 159 0 0 chr1 21111406 21111475 -221552878 - Tigger2 DNA MER2_type -2649 69 1 * 518 279 122 20 chr1 21112040 21112237 -221552116 - MIR SINE MIR -17 245 29 209 359 106 45 chr1 21112254 21112566 -221551787 - L2 LINE L2 -5 3267 2937 2186 138 0 0 chr1 21112644 21112948 -221551405 - AluSx SINE Alu -8 304 1 331 194 15 0 chr1 21113675 21113742 -221550611 - MIR SINE MIR -70 138 71 1997 136 0 18 chr1 21113862 21114038 -221550315 - AluSx SINE Alu 0 308 138 2342 122 0 0 chr1 21114038 21114350 -221550003 - AluSq SINE Alu -1 312 1 1997 136 0 18 chr1 21114350 21114485 -221549868 - AluSx SINE Alu -170 138 2 923 171 81 38 chr1 21114524 21114734 -221549619 - MER20 DNA MER1_type 0 219 1 2112 137 0 13 chr1 21114780 21115095 -221549258 + AluJb SINE Alu 1 311 -1 285 245 42 33 chr1 21115315 21115411 -221548942 + MIR3 SINE MIR 61 158 -50 206 295 16 0 chr1 21115428 21115489 -221548864 - L2 LINE L2 -3 3310 3249 189 0 0 0 chr1 21115720 21115741 -221548612 + (CA)n Simple_repeat Simple_repeat 1 21 0 347 277 10 0 chr1 21116477 21116578 -221547775 - L1ME1 LINE L1 -19 6147 6046 888 300 65 45 chr1 21116582 21117193 -221547160 - L1MC4a LINE L1 -1918 5890 5273 463 317 104 56 chr1 21117263 21117619 -221546734 + L1M4 LINE L1 4773 5145 -1001 423 119 0 0 chr1 21117877 21117944 -221546409 + (TCC)n Simple_repeat Simple_repeat 1 67 0 249 246 6 77 chr1 21119226 21119409 -221544944 + C-rich Low_complexity Low_complexity 3 172 0 397 293 40 83 chr1 21119868 21120168 -221544185 - L2 LINE L2 0 3313 3027 314 350 21 14 chr1 21120442 21120585 -221543768 + MIR SINE MIR 20 163 -99 279 273 104 59 chr1 21121382 21121602 -221542751 - HAL1b LINE L1 -10 1338 1109 660 285 22 26 chr1 21121688 21121916 -221542437 - MIR SINE MIR -35 227 1 508 226 202 45 chr1 21121945 21122237 -221542116 - L1ME LINE L1 -363 5758 5421 537 269 7 0 chr1 21122717 21122858 -221541495 + MER103 DNA DNA 13 154 -12 1693 165 6 69 chr1 21122950 21123283 -221541070 - AluJo SINE Alu 0 312 1 372 318 103 11 chr1 21123492 21123654 -221540699 - MIR SINE MIR -62 146 3 288 0 0 0 chr1 21124892 21124924 -221539429 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1885 126 7 0 chr1 21124924 21125202 -221539151 - AluSx SINE Alu -32 280 1 198 0 0 0 chr1 21125252 21125274 -221539079 + (T)n Simple_repeat Simple_repeat 1 22 0 422 231 113 86 chr1 21125299 21125485 -221538868 - MIR SINE MIR -26 236 46 476 228 47 2 chr1 21125849 21126001 -221538352 - MIR SINE MIR -62 146 35 254 315 56 0 chr1 21126265 21126373 -221537980 + MIR3 SINE MIR 88 201 -7 1630 155 56 11 chr1 21126759 21126892 -221537461 + AluJo SINE Alu 3 128 -184 2227 106 0 0 chr1 21126892 21127194 -221537159 + AluSg SINE Alu 1 302 -8 1630 155 56 11 chr1 21127194 21127344 -221537009 + AluJo SINE Alu 128 299 -13 370 324 21 42 chr1 21127370 21127512 -221536841 + MIR3 SINE MIR 54 192 -16 575 276 55 96 chr1 21128359 21128652 -221535701 - L2 LINE L2 -5 3267 2987 619 223 43 7 chr1 21129897 21130036 -221534317 + MIR3 SINE MIR 19 162 -46 208 293 27 27 chr1 21131912 21131987 -221532366 + MIR3 SINE MIR 82 156 -52 474 349 0 7 chr1 21132679 21132825 -221531528 + MIR3 SINE MIR 16 160 -48 310 294 59 10 chr1 21133073 21133175 -221531178 - L2 LINE L2 -7 3306 3200 1166 272 57 42 chr1 21135150 21135171 -221529182 - LTR16C LTR ERVL 0 491 472 540 234 0 9 chr1 21135171 21135282 -221529071 + MER81 DNA DNA 1 110 -4 1166 272 57 42 chr1 21135282 21135661 -221528692 - LTR16C LTR ERVL -19 472 85 262 298 32 0 chr1 21135952 21136046 -221528307 - LTR16C LTR ERVL -390 101 5 408 20 0 0 chr1 21136616 21136665 -221527688 + (TG)n Simple_repeat Simple_repeat 2 50 0 380 296 76 111 chr1 21137972 21138316 -221526037 + L2 LINE L2 2932 3263 -9 36 53 0 0 chr1 21138497 21138554 -221525799 + AT_rich Low_complexity Low_complexity 1 57 0 191 111 0 22 chr1 21138554 21138599 -221525754 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 241 328 8 25 chr1 21138599 21138718 -221525635 - MIR SINE MIR -128 134 18 313 282 8 57 chr1 21139167 21139291 -221525062 - MIR3 SINE MIR -9 199 82 2503 126 67 50 chr1 21139352 21139538 -221524815 + MSTC LTR MaLR 1 182 -246 2116 120 0 3 chr1 21139538 21139839 -221524514 + AluSq SINE Alu 1 300 -13 2503 126 67 50 chr1 21139839 21140073 -221524280 + MSTC LTR MaLR 182 428 0 570 208 0 0 chr1 21140410 21140516 -221523837 + MIR3 SINE MIR 82 187 -21 283 167 152 0 chr1 21140932 21140998 -221523355 + MIR SINE MIR 66 141 -121 312 271 7 57 chr1 21142562 21142702 -221521651 + GA-rich Low_complexity Low_complexity 6 138 0 1003 307 120 7 chr1 21142726 21143342 -221521011 + L2 LINE L2 1980 2665 -649 1248 132 0 0 chr1 21143376 21143558 -221520795 - AluY SINE Alu -129 182 1 714 65 0 0 chr1 21143559 21143651 -221520702 + AluSg/x SINE Alu 185 276 -36 899 63 42 0 chr1 21143658 21143800 -221520553 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 1168 262 65 32 chr1 21143803 21144362 -221519991 + L2 LINE L2 2722 3299 -14 244 300 25 0 chr1 21144362 21144442 -221519911 + GA-rich Low_complexity Low_complexity 3 84 0 244 258 16 0 chr1 21144963 21145025 -221519328 - L3 LINE CR1 -116 1461 1399 367 331 109 11 chr1 21145181 21145365 -221518988 - MIR SINE MIR -60 202 1 298 311 22 11 chr1 21145513 21145603 -221518750 + MIR SINE MIR 59 149 -59 626 269 19 60 chr1 21146024 21146240 -221518113 - MIR SINE MIR -53 209 3 185 339 0 46 chr1 21146939 21147048 -221517305 - MER5B DNA MER1_type -35 143 40 180 176 0 0 chr1 21147237 21147271 -221517082 + T-rich Low_complexity Low_complexity 1 34 0 289 278 19 28 chr1 21147464 21147572 -221516781 + MIR3 SINE MIR 15 121 -87 474 229 70 25 chr1 21147791 21147948 -221516405 + MER103 DNA DNA 1 164 -2 964 232 30 4 chr1 21147958 21148195 -221516158 - MIR SINE MIR -3 259 17 422 300 64 7 chr1 21148750 21148890 -221515463 - L2 LINE L2 -1 3312 3165 631 283 34 24 chr1 21148923 21149128 -221515225 - MIR SINE MIR -8 254 48 265 294 29 114 chr1 21149167 21149412 -221514941 - L2 LINE L2 -192 3080 2857 600 273 49 41 chr1 21149596 21149845 -221514508 + MIR SINE MIR 7 255 -7 449 310 183 49 chr1 21150216 21151065 -221513288 + L2 LINE L2 2308 3271 -1 191 261 43 43 chr1 21151159 21151228 -221513125 - MIR SINE MIR -102 106 38 189 347 28 0 chr1 21151836 21151908 -221512445 - MER5A DNA MER1_type -8 181 108 225 174 43 0 chr1 21152188 21152234 -221512119 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 968 234 181 13 chr1 21153527 21153831 -221510522 - MLT1K LTR MaLR -24 564 210 657 279 93 25 chr1 21153869 21154073 -221510280 - MIR SINE MIR -31 231 14 449 246 73 0 chr1 21154060 21154170 -221510183 - MER5A DNA MER1_type -4 185 68 * 260 288 53 45 chr1 21154268 21154400 -221509953 - MLT1K LTR MaLR -410 178 46 760 232 12 0 chr1 21154405 21154573 -221509780 + MIR SINE MIR 90 259 -3 400 319 125 17 chr1 21154895 21155127 -221509226 + MIR SINE MIR 2 258 -4 418 295 64 56 chr1 21155704 21155862 -221508491 + MIR SINE MIR 8 170 -92 2282 110 0 0 chr1 21155862 21156170 -221508183 + AluSc SINE Alu 1 308 -1 418 295 64 56 chr1 21156170 21156245 -221508108 + MIR SINE MIR 170 243 -19 520 266 49 0 chr1 21156430 21156573 -221507780 + L2 LINE L2 3154 3303 -10 255 189 19 0 chr1 21156584 21156637 -221507716 - L2 LINE L2 0 3272 3219 242 140 0 20 chr1 21157268 21157318 -221507035 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 296 216 0 23 chr1 21157408 21157496 -221506857 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 186 118 0 0 chr1 21157696 21157730 -221506623 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 289 224 104 0 chr1 21157730 21157797 -221506556 - L2 LINE L2 -13 3259 3186 8796 186 64 98 chr1 21158361 21160365 -221503988 + L1MD2 LINE L1 22 2161 -4516 1301 141 0 42 chr1 21160365 21160578 -221503775 - AluJb SINE Alu -27 285 82 8796 186 64 98 chr1 21160578 21161185 -221503168 + L1MD2 LINE L1 2161 2787 -3890 1692 196 15 6 chr1 21161185 21161512 -221502841 + L1MD2 LINE L1 6094 6423 -330 336 274 62 0 chr1 21162003 21162116 -221502237 + L2 LINE L2 3152 3271 -1 2023 103 0 82 chr1 21162173 21162502 -221501851 + AluSx SINE Alu 1 302 -10 450 225 49 35 chr1 21162967 21163109 -221501244 + MIR SINE MIR 42 185 -77 258 206 0 0 chr1 21163281 21163349 -221501004 + (ATG)n Simple_repeat Simple_repeat 2 69 0 342 289 122 32 chr1 21163370 21163526 -221500827 - MIR SINE MIR -14 248 79 283 326 118 69 chr1 21163675 21164022 -221500331 - L2 LINE L2 0 3272 2909 428 306 218 0 chr1 21164455 21164661 -221499692 + MIR SINE MIR 11 261 -1 186 259 0 35 chr1 21164642 21164700 -221499653 - MIR SINE MIR -99 163 108 * 573 241 55 0 chr1 21165162 21165307 -221499046 + MIR3 SINE MIR 34 186 -22 941 262 9 9 chr1 21165915 21166140 -221498213 + MIR SINE MIR 34 258 -4 423 257 143 6 chr1 21166430 21166605 -221497748 - MIR3 SINE MIR -7 201 3 392 292 18 0 chr1 21167197 21167310 -221497043 + MIR SINE MIR 77 191 -71 291 273 45 34 chr1 21167355 21167443 -221496910 - MIR SINE MIR -56 152 64 820 251 30 0 chr1 21167468 21167671 -221496682 - MIR SINE MIR -40 222 14 372 272 34 41 chr1 21167809 21167956 -221496397 + MIR SINE MIR 67 212 -50 437 285 29 22 chr1 21168265 21168402 -221495951 - MIR SINE MIR -72 190 53 225 248 88 48 chr1 21168456 21168581 -221495772 - MIR SINE MIR -113 149 20 204 224 112 41 chr1 21168660 21168758 -221495595 - MIR SINE MIR -58 150 46 * 217 245 25 110 chr1 21168686 21168849 -221495504 + MIR3 SINE MIR 36 184 -24 379 344 8 0 chr1 21168868 21168993 -221495360 - MER5A DNA MER1_type 0 189 64 468 276 82 0 chr1 21169285 21169419 -221494934 - L2 LINE L2 0 3313 3169 180 121 30 0 chr1 21169512 21169545 -221494808 - MIR SINE MIR -117 145 112 260 287 44 59 chr1 21169792 21169928 -221494425 - L2 LINE L2 -2 3270 3137 764 242 16 6 chr1 21169989 21170171 -221494182 - MIR SINE MIR -38 224 41 230 316 32 42 chr1 21171682 21171777 -221492576 - MIR SINE MIR -135 127 34 227 178 22 0 chr1 21171811 21171823 -221492530 + MER34C LTR ERV1 25 37 -548 387 103 29 0 chr1 21171823 21171891 -221492462 + MER34B LTR ERV1 1 70 -495 922 136 0 0 chr1 21171891 21172023 -221492330 + AluJ SINE Alu 1 132 -170 21 0 0 0 chr1 21172023 21172044 -221492309 + AT_rich Low_complexity Low_complexity 1 21 0 6482 91 12 8 chr1 21172054 21173541 -221490812 + L1PA11 LINE L1 4680 6171 -3 917 183 77 0 chr1 21173550 21173719 -221490634 + AluJ SINE Alu 131 312 0 2610 150 31 0 chr1 21173740 21174194 -221490159 + MER34B LTR ERV1 77 544 -21 247 299 80 45 chr1 21174330 21174594 -221489759 - L2 LINE L2 -189 3083 2811 276 111 0 0 chr1 21174698 21174743 -221489610 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 252 188 0 31 chr1 21174751 21174815 -221489538 + (TGAA)n Simple_repeat Simple_repeat 4 65 0 347 237 161 0 chr1 21174858 21174951 -221489402 + MIR SINE MIR 33 140 -68 218 205 0 0 chr1 21177100 21177139 -221487214 - L3 LINE CR1 -15 1562 1524 975 118 0 20 chr1 21177149 21177301 -221487052 - L1PA16 LINE L1 0 6166 6018 192 97 0 0 chr1 21177461 21177492 -221486861 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 660 302 79 50 chr1 21177496 21177913 -221486440 - L2 LINE L2 -18 3295 2867 371 307 44 0 chr1 21178014 21178151 -221486202 - MIR3 SINE MIR -48 160 18 466 272 204 5 chr1 21178794 21179000 -221485353 + MIR SINE MIR 10 256 -6 297 75 0 0 chr1 21179206 21179246 -221485107 + (TG)n Simple_repeat Simple_repeat 1 40 0 355 353 58 51 chr1 21179371 21179666 -221484687 + L3 LINE CR1 332 628 -949 1155 268 63 40 chr1 21179722 21180118 -221484235 - L2 LINE L2 -3 3310 2906 318 156 0 52 chr1 21180278 21180355 -221483998 - L2 LINE L2 -386 2886 2814 185 268 42 42 chr1 21180355 21180426 -221483927 - L2 LINE L2 -694 2620 2550 * 739 276 131 0 chr1 21180403 21180624 -221483729 + MIR SINE MIR 5 254 -8 2577 171 34 3 chr1 21180629 21181127 -221483226 + L1MD3 LINE L1 6129 6254 -79 2077 128 24 7 chr1 21181272 21181568 -221482785 - AluSx SINE Alu -10 302 2 183 412 35 0 chr1 21181574 21181659 -221482694 + L3 LINE CR1 1393 1480 -97 494 268 124 0 chr1 21181938 21182091 -221482262 + MIR SINE MIR 10 181 -81 446 321 71 31 chr1 21182879 21183075 -221481278 - MIR SINE MIR -14 248 45 272 271 94 0 chr1 21183127 21183212 -221481141 - L2 LINE L2 -43 3229 3137 274 326 0 0 chr1 21183511 21183597 -221480756 + MIR SINE MIR 7 92 -170 1370 250 234 32 chr1 21183731 21184474 -221479879 - L2 LINE L2 0 3313 2383 4504 235 138 42 chr1 21184476 21186483 -221477870 + HAL1 LINE L1 1 2285 -222 4174 233 43 23 chr1 21186483 21188355 -221475998 + L1MB7 LINE L1 4 2248 -4711 * 6779 190 51 10 chr1 21188351 21189137 -221475216 + L1MB7 LINE L1 4455 5208 -1787 1923 148 3 10 chr1 21189137 21189428 -221474925 + AluJb SINE Alu 1 289 -23 6779 190 51 10 chr1 21189428 21191069 -221473284 + L1MB7 LINE L1 5208 6983 -12 521 233 89 20 chr1 21191098 21191300 -221473053 + HAL1 LINE L1 2292 2507 0 618 238 124 19 chr1 21191647 21191857 -221472496 - MIR SINE MIR -19 243 12 357 277 40 10 chr1 21192241 21192342 -221472011 - MIR3 SINE MIR -27 181 78 2354 86 0 3 chr1 21192489 21192779 -221471574 + AluSx SINE Alu 11 299 -13 1184 101 6 6 chr1 21192779 21192938 -221471415 + AluSg/x SINE Alu 134 292 -20 203 133 0 0 chr1 21192999 21193029 -221471324 + (TCTCCC)n Simple_repeat Simple_repeat 2 31 0 542 246 15 30 chr1 21193096 21193230 -221471123 + MIR SINE MIR 28 159 -103 652 158 167 0 chr1 21193236 21193350 -221471003 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr1 21193350 21193371 -221470982 + AT_rich Low_complexity Low_complexity 1 21 0 214 143 0 0 chr1 21193798 21193833 -221470520 - MIR SINE MIR -59 149 115 1841 185 3 0 chr1 21194475 21194767 -221469586 + AluJb SINE Alu 1 293 -19 432 310 25 6 chr1 21194781 21194939 -221469414 + L2 LINE L2 3151 3311 -2 441 269 110 0 chr1 21194989 21195134 -221469219 - MIR SINE MIR -55 207 47 326 291 0 47 chr1 21195418 21195545 -221468808 + GA-rich Low_complexity Low_complexity 2 122 0 469 189 180 0 chr1 21196388 21196510 -221467843 + MER45A DNA AcHobo 34 177 -1 209 314 129 0 chr1 21196591 21196661 -221467692 - MIR SINE MIR -21 241 163 372 227 9 82 chr1 21196727 21196771 -221467582 - MER5A DNA MER1_type -84 105 59 2097 128 16 0 chr1 21196771 21197076 -221467277 - AluSx SINE Alu -2 310 1 372 227 9 82 chr1 21197076 21197141 -221467212 - MER5A DNA MER1_type -130 59 4 875 219 77 9 chr1 21197263 21197496 -221466857 + LTR16A1 LTR ERVL 209 457 0 347 259 161 0 chr1 21197496 21197608 -221466745 - MIR SINE MIR -99 163 34 1254 109 36 0 chr1 21197945 21198137 -221466216 + MSTA LTR MaLR 1 199 -229 2311 114 0 0 chr1 21198141 21198440 -221465913 + AluSp SINE Alu 1 299 -14 718 129 17 0 chr1 21198553 21198669 -221465684 + AluSg/x SINE Alu 179 296 -16 387 307 12 91 chr1 21198670 21198911 -221465442 - L2 LINE L2 -621 2693 2472 566 234 99 14 chr1 21199273 21199414 -221464939 + MIR3 SINE MIR 16 168 -40 938 280 172 6 chr1 21199414 21199775 -221464578 + MLT1K LTR MaLR 161 581 -7 255 192 75 92 chr1 21199841 21199961 -221464392 + L2 LINE L2 2942 3059 -213 528 216 85 20 chr1 21200023 21200176 -221464177 - MER103 DNA DNA -2 164 2 209 343 0 0 chr1 21200307 21200374 -221463979 - L2 LINE L2 -23 3290 3224 319 327 63 0 chr1 21200418 21200537 -221463816 + MIR3 SINE MIR 43 169 -39 385 291 9 0 chr1 21200537 21200647 -221463706 + MLT1K LTR MaLR 161 271 -317 2306 129 0 0 chr1 21200726 21201036 -221463317 + AluSx SINE Alu 1 310 -2 563 309 32 18 chr1 21201240 21201457 -221462896 + MIR SINE MIR 33 256 -6 1590 279 49 27 chr1 21201780 21202335 -221462018 + MLT1E LTR MaLR 27 593 0 324 240 80 60 chr1 21202335 21202447 -221461906 - MLT1K LTR MaLR -49 539 425 273 286 0 0 chr1 21202447 21202531 -221461822 - LTR16C LTR ERVL 0 491 408 326 266 43 22 chr1 21202592 21202731 -221461622 - LTR16C LTR ERVL -251 240 99 640 271 45 14 chr1 21202818 21203039 -221461314 - MLT1K LTR MaLR -163 425 198 536 215 31 63 chr1 21203200 21203277 -221461076 - MER112 DNA MER1_type -36 224 146 915 127 9 167 chr1 21203277 21203498 -221460855 - MER5A DNA MER1_type 0 189 4 536 215 31 63 chr1 21203498 21203611 -221460742 - MER112 DNA MER1_type -114 146 40 2369 116 0 0 chr1 21203611 21203921 -221460432 - AluSx SINE Alu -2 310 1 334 265 120 16 chr1 21203953 21204071 -221460282 - MIR SINE MIR -92 116 2 636 232 119 8 chr1 21204150 21204471 -221459882 - MLT1J LTR MaLR -28 483 84 452 310 120 0 chr1 21205624 21205808 -221458545 - MIR SINE MIR -6 256 51 253 181 0 28 chr1 21207640 21207712 -221456641 + (CA)n Simple_repeat Simple_repeat 1 70 0 201 317 67 10 chr1 21208095 21208199 -221456154 + MIR SINE MIR 22 131 -77 1952 130 31 20 chr1 21208290 21208582 -221455771 + AluSx SINE Alu 1 295 -17 451 239 172 18 chr1 21208827 21208995 -221455358 + MIR3 SINE MIR 7 196 -12 198 322 59 9 chr1 21209135 21209251 -221455102 - MIR SINE MIR -98 164 40 688 258 56 14 chr1 21209257 21209470 -221454883 - MIR SINE MIR -38 224 3 244 172 94 16 chr1 21209768 21209832 -221454521 - MLT1J LTR MaLR -179 416 348 353 177 13 51 chr1 21209850 21209929 -221454424 - MLT1H LTR MaLR -251 298 223 198 136 0 0 chr1 21209929 21209973 -221454380 + (GA)n Simple_repeat Simple_repeat 2 45 0 995 204 54 5 chr1 21209973 21210194 -221454159 - MLT1H LTR MaLR -317 232 1 359 224 9 95 chr1 21210244 21210360 -221453993 - MIR3 SINE MIR -8 200 95 729 272 40 18 chr1 21210663 21210887 -221453466 - MIR SINE MIR 0 262 34 1959 114 0 42 chr1 21211049 21211338 -221453015 + AluSx SINE Alu 19 295 -17 1037 266 38 13 chr1 21211353 21211590 -221452763 + MIR SINE MIR 20 262 0 864 262 128 52 chr1 21212708 21213131 -221451222 + L2 LINE L2 2844 3298 -15 277 227 80 34 chr1 21213154 21213242 -221451111 - MIR SINE MIR -73 189 98 2065 165 139 35 chr1 21213259 21213775 -221450578 + L1ME1 LINE L1 5494 6063 -103 325 250 11 43 chr1 21213781 21213873 -221450480 + MER21B LTR ERV1 1 89 -774 2212 237 18 82 chr1 21213947 21214321 -221450032 + MER21B LTR ERV1 133 439 -424 1990 154 20 0 chr1 21214321 21214613 -221449740 + AluSx SINE Alu 6 303 -9 2212 237 18 82 chr1 21214613 21214965 -221449388 + MER21B LTR ERV1 439 812 -51 476 204 0 35 chr1 21215003 21215116 -221449237 + L1ME1 LINE L1 6054 6162 -4 232 238 238 0 chr1 21215116 21215196 -221449157 + MIR3 SINE MIR 14 112 -96 417 267 25 17 chr1 21215398 21215518 -221448835 - MER115 DNA AcHobo -382 311 191 * 596 165 0 0 chr1 21215508 21215605 -221448748 + MER21B LTR ERV1 239 335 -528 458 320 56 0 chr1 21215692 21215870 -221448483 - MER115 DNA AcHobo -498 195 8 590 283 49 26 chr1 21216099 21216334 -221448019 - MIR SINE MIR -9 253 16 806 201 75 0 chr1 21216446 21216605 -221447748 - FRAM SINE Alu -1 175 5 2370 101 7 0 chr1 21216864 21217170 -221447183 + AluSx SINE Alu 1 308 -4 342 224 0 0 chr1 21217246 21217362 -221446991 + (TG)n Simple_repeat Simple_repeat 2 117 0 603 202 0 8 chr1 21217373 21218025 -221446328 + (TG)n Simple_repeat Simple_repeat 1 646 0 728 240 22 11 chr1 21218204 21218387 -221445966 - MIR SINE MIR -2 260 76 2520 80 0 0 chr1 21218701 21219003 -221445350 + AluSx SINE Alu 1 302 -10 254 182 234 13 chr1 21219126 21219203 -221445150 - MIR3 SINE MIR -25 183 90 341 319 0 18 chr1 21219856 21219969 -221444384 - L2 LINE L2 0 3313 3203 730 261 58 19 chr1 21220236 21220443 -221443910 - MIR SINE MIR -35 227 13 456 263 17 0 chr1 21220714 21220832 -221443521 + L2 LINE L2 3188 3307 -6 324 308 17 25 chr1 21220897 21221017 -221443336 - MER5A DNA MER1_type -43 146 28 2024 137 33 38 chr1 21221282 21221648 -221442705 + THE1B LTR MaLR 1 364 0 318 252 35 21 chr1 21221751 21221894 -221442459 + GA-rich Low_complexity Low_complexity 2 146 0 1905 170 0 7 chr1 21222086 21222386 -221441967 - AluJo SINE Alu -14 298 1 203 244 0 0 chr1 21222616 21222661 -221441692 + MIR3 SINE MIR 120 164 -44 502 282 257 23 chr1 21222748 21223145 -221441208 + L2 LINE L2 2824 3313 0 180 248 324 0 chr1 21223222 21223327 -221441026 - MIR SINE MIR -96 166 28 541 234 16 16 chr1 21223872 21224000 -221440353 + MIR SINE MIR 20 147 -115 220 243 115 47 chr1 21224109 21224257 -221440096 + L2 LINE L2 2934 3091 -181 381 284 14 24 chr1 21224373 21224540 -221439813 + GA-rich Low_complexity Low_complexity 2 289 0 463 300 64 36 chr1 21225306 21225526 -221438827 - MIR SINE MIR -1 261 36 643 278 40 29 chr1 21225710 21225983 -221438370 - L1ME4a LINE L1 -232 5889 5614 207 283 0 0 chr1 21226314 21226367 -221437986 - MIR SINE MIR -119 143 91 438 231 0 0 chr1 21226633 21226776 -221437577 + (TG)n Simple_repeat Simple_repeat 2 144 0 286 329 75 33 chr1 21226807 21227047 -221437306 + MIR SINE MIR 12 261 -1 246 258 0 45 chr1 21227087 21227153 -221437200 - L2 LINE L2 0 3313 3251 271 295 21 0 chr1 21227244 21227339 -221437014 + MIR SINE MIR 68 164 -98 2253 119 0 0 chr1 21227516 21227819 -221436534 + AluSx SINE Alu 1 303 -9 540 233 30 8 chr1 21228272 21228405 -221435948 + MIR SINE MIR 127 262 0 361 306 52 96 chr1 21228558 21228737 -221435616 - L2 LINE L2 -97 3175 3021 2381 98 3 9 chr1 21228737 21229052 -221435301 - AluSq SINE Alu 0 313 1 361 306 52 96 chr1 21229052 21229258 -221435095 - L2 LINE L2 -251 3021 2807 2332 108 7 0 chr1 21229285 21229592 -221434761 - AluY SINE Alu -2 309 1 1287 193 8 4 chr1 21229606 21229871 -221434482 + L1MD3 LINE L1 7730 7995 0 321 322 201 21 chr1 21229877 21230166 -221434187 - L2 LINE L2 -541 2773 2433 2117 140 7 3 chr1 21230351 21230659 -221433694 - AluSx SINE Alu -3 309 1 336 288 67 71 chr1 21230759 21231026 -221433327 - MLT1K LTR MaLR -306 282 17 685 268 29 61 chr1 21231663 21231909 -221432444 + MIR SINE MIR 20 257 -5 239 191 16 0 chr1 21231957 21232020 -221432333 + (TGGA)n Simple_repeat Simple_repeat 4 67 0 528 194 0 0 chr1 21232080 21232214 -221432139 + (TGGA)n Simple_repeat Simple_repeat 4 137 0 1962 171 30 30 chr1 21232226 21232373 -221431980 + MSTD LTR MaLR 4 150 -246 2462 77 0 0 chr1 21232373 21232670 -221431683 - AluY SINE Alu -14 297 1 1962 171 30 30 chr1 21232670 21232915 -221431438 + MSTD LTR MaLR 149 396 0 311 158 0 26 chr1 21232941 21233017 -221431336 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 238 380 0 19 chr1 21233036 21233144 -221431209 - L2 LINE L2 -88 3184 3079 350 355 50 0 chr1 21233741 21233882 -221430471 + MIR3 SINE MIR 45 192 -16 304 321 45 8 chr1 21233945 21234079 -221430274 + MIR SINE MIR 82 220 -42 237 244 139 0 chr1 21234221 21234307 -221430046 - MIR SINE MIR -79 129 32 240 35 0 0 chr1 21234588 21234617 -221429736 + (CTG)n Simple_repeat Simple_repeat 2 30 0 585 323 15 0 chr1 21234752 21234950 -221429403 + MIR SINE MIR 11 211 -51 455 301 118 6 chr1 21234961 21235318 -221429035 - LTR16A LTR ERVL -6 444 3 705 188 0 0 chr1 21235352 21235501 -221428852 + (CAT)n Simple_repeat Simple_repeat 2 150 0 752 193 17 0 chr1 21235525 21235701 -221428652 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 549 241 0 0 chr1 21236412 21236582 -221427771 + (CACCAT)n Simple_repeat Simple_repeat 4 173 0 498 303 21 43 chr1 21236611 21236799 -221427554 - MIR SINE MIR -65 197 14 468 325 160 19 chr1 21237214 21237590 -221426763 + L2 LINE L2 2844 3272 0 199 181 12 133 chr1 21237870 21237953 -221426400 - MIR SINE MIR -72 136 64 202 316 0 0 chr1 21238142 21238199 -221426154 + C-rich Low_complexity Low_complexity 2 58 0 531 326 67 32 chr1 21238766 21239229 -221425124 + L2 LINE L2 2462 2940 -374 1122 245 146 32 chr1 21239343 21239869 -221424484 + MLT2F LTR ERVL 22 607 -56 181 337 24 0 chr1 21240003 21240086 -221424267 + L2 LINE L2 3164 3248 -24 292 280 144 8 chr1 21241543 21241675 -221422678 - MIR SINE MIR -76 186 37 188 276 35 0 chr1 21242171 21242229 -221422124 - MIR SINE MIR -202 60 1 1143 208 117 47 chr1 21242268 21242609 -221421744 - MLT1A1 LTR MaLR 0 365 1 999 103 0 0 chr1 21242620 21242766 -221421587 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 258 172 35 0 chr1 21243143 21243201 -221421152 + (GCTG)n Simple_repeat Simple_repeat 4 63 0 943 191 38 24 chr1 21243813 21244022 -221420331 - MIR SINE MIR 0 262 51 391 254 46 101 chr1 21244057 21244133 -221420220 - L1ME4a LINE L1 -225 5896 5817 2254 85 0 3 chr1 21244133 21244456 -221419897 - AluSq SINE Alu 0 323 2 391 254 46 101 chr1 21244456 21244594 -221419759 - L1ME4a LINE L1 -304 5817 5692 610 316 93 29 chr1 21245028 21245436 -221418917 - L2 LINE L2 -3 3269 2836 199 246 297 25 chr1 21245824 21245942 -221418411 - MIR SINE MIR -13 249 100 207 289 0 0 chr1 21246543 21246595 -221417758 + MIR SINE MIR 80 131 -131 581 198 30 84 chr1 21246705 21246834 -221417519 + MIR SINE MIR 86 206 -56 1758 172 6 19 chr1 21246834 21247148 -221417205 + AluJo SINE Alu 2 311 -1 581 198 30 84 chr1 21247148 21247185 -221417168 + MIR SINE MIR 206 243 -19 256 333 28 9 chr1 21247204 21247312 -221417041 + MIR SINE MIR 150 259 -3 278 213 16 0 chr1 21247341 21247402 -221416951 - MIR SINE MIR -118 144 83 1211 147 18 18 chr1 21247431 21247649 -221416704 - MER20 DNA MER1_type -1 218 1 234 218 82 73 chr1 21248012 21248122 -221416231 + L2 LINE L2 3160 3270 -2 429 251 83 113 chr1 21248197 21248221 -221416132 + MIR SINE MIR 7 30 -232 2517 73 0 3 chr1 21248221 21248523 -221415830 + AluSq SINE Alu 1 301 -12 429 251 83 113 chr1 21248523 21248746 -221415607 + MIR SINE MIR 30 237 -25 189 222 79 16 chr1 21249548 21249611 -221414742 - MIR3 SINE MIR -25 183 117 * 756 292 29 12 chr1 21249598 21249838 -221414515 + MIR SINE MIR 13 256 -6 189 256 0 0 chr1 21249857 21249900 -221414453 - MIR SINE MIR -117 91 49 271 81 0 0 chr1 21251100 21251137 -221413216 + L1MC3 LINE L1 7059 7095 -690 348 286 0 0 chr1 21251139 21251230 -221413123 + MLT1F1 LTR MaLR 35 125 -442 2234 177 128 9 chr1 21251230 21251761 -221412592 + L1MC3 LINE L1 7189 7782 -3 427 200 0 22 chr1 21251932 21252022 -221412331 + L2 LINE L2 3225 3312 -1 333 279 78 8 chr1 21252518 21252647 -221411706 - MIR SINE MIR -100 162 25 628 191 30 0 chr1 21253520 21253651 -221410702 + MIR SINE MIR 47 181 -81 449 278 117 17 chr1 21254722 21254902 -221409451 - MIR SINE MIR -48 214 17 324 0 0 0 chr1 21255681 21255717 -221408636 + (TG)n Simple_repeat Simple_repeat 2 37 0 188 75 0 50 chr1 21256228 21256268 -221408085 + (TTTTTA)n Simple_repeat Simple_repeat 2 39 0 204 40 0 0 chr1 21256284 21256309 -221408044 + (TCC)n Simple_repeat Simple_repeat 2 26 0 35 95 0 0 chr1 21258212 21258317 -221406036 + GC_rich Low_complexity Low_complexity 1 105 0 29 0 0 0 chr1 21258497 21258526 -221405827 + GC_rich Low_complexity Low_complexity 1 29 0 13048 48 42 65 chr1 21258801 21258826 -221405527 + HUERS-P1 LTR ERV1 2344 2368 -3895 2321 101 7 0 chr1 21258826 21259134 -221405219 + AluSp SINE Alu 1 310 -3 13048 48 42 65 chr1 21259134 21259456 -221404897 + HUERS-P1 LTR ERV1 2368 2696 -3567 2215 91 25 7 chr1 21259456 21259741 -221404612 + AluSq SINE Alu 1 290 -23 13048 48 42 65 chr1 21259741 21259778 -221404575 + HUERS-P1 LTR ERV1 2696 2732 -3531 2519 87 0 0 chr1 21259778 21260090 -221404263 + AluSx SINE Alu 1 312 0 13048 48 42 65 chr1 21260090 21260871 -221403482 + HUERS-P1 LTR ERV1 2732 3530 -2733 2124 101 35 0 chr1 21260871 21261157 -221403196 + AluSx SINE Alu 5 300 -12 13048 48 42 65 chr1 21261157 21261351 -221403002 + HUERS-P1 LTR ERV1 3530 3727 -2536 2374 88 3 0 chr1 21261351 21261645 -221402708 + AluSq SINE Alu 1 295 -18 2210 104 31 0 chr1 21261651 21261939 -221402414 + AluSx SINE Alu 1 297 -15 13048 48 42 65 chr1 21261939 21262609 -221401744 + HUERS-P1 LTR ERV1 3732 4337 -1926 3697 70 2 12 chr1 21262609 21263108 -221401245 - LTR8 LTR ERV1 -197 494 1 4424 40 54 15 chr1 21263108 21263704 -221400649 - HUERS-P1 LTR ERV1 0 6263 5645 1905 105 4 16 chr1 21263704 21263961 -221400392 + AluSx SINE Alu 47 300 -12 412 296 31 31 chr1 21263968 21264127 -221400226 - MIR3 SINE MIR -25 183 25 567 106 0 12 chr1 21264250 21264335 -221400018 + LTR8 LTR ERV1 503 586 -105 1012 173 5 13 chr1 21264375 21264592 -221399761 - L1M4 LINE L1 -945 5201 4990 2672 53 0 0 chr1 21264592 21264893 -221399460 + AluY SINE Alu 1 301 -10 1012 173 5 13 chr1 21264893 21264910 -221399443 - L1M4 LINE L1 -1156 4990 4974 382 211 81 32 chr1 21264924 21265047 -221399306 - MIR SINE MIR -32 230 102 421 289 31 31 chr1 21265778 21265937 -221398416 + MIR3 SINE MIR 25 183 -25 2407 83 3 16 chr1 21265944 21266257 -221398096 - AluSx SINE Alu -3 309 1 184 339 40 32 chr1 21266335 21266459 -221397894 + MIR SINE MIR 82 206 -56 243 220 186 0 chr1 21266529 21266588 -221397765 + L2 LINE L2 3244 3313 0 367 310 26 9 chr1 21266598 21266711 -221397642 - L3 LINE CR1 -44 1533 1419 612 200 8 15 chr1 21267049 21267179 -221397174 + MLT1L LTR MaLR 133 261 -354 2440 33 0 4 chr1 21267493 21267796 -221396557 - AluY SINE Alu 0 309 8 284 208 154 87 chr1 21267801 21267950 -221396403 - MLT1K LTR MaLR -11 577 419 513 302 22 11 chr1 21268005 21268187 -221396166 - MLT1K LTR MaLR -258 330 147 2402 99 3 6 chr1 21268562 21268876 -221395477 - AluSq SINE Alu 0 313 1 388 286 250 0 chr1 21269936 21270076 -221394277 - MER96 DNA MER1_type? 0 175 1 329 224 63 69 chr1 21270076 21270250 -221394103 - MLT1K LTR MaLR -38 550 378 2380 109 3 0 chr1 21270707 21271018 -221393335 + AluSx SINE Alu 1 312 0 1409 232 100 46 chr1 21271632 21271823 -221392530 + MLT1J LTR MaLR 5 184 -327 2221 102 3 0 chr1 21271823 21272131 -221392222 - AluSp SINE Alu 0 309 1 1409 232 100 46 chr1 21272131 21272417 -221391936 + MLT1J LTR MaLR 184 509 -2 727 257 19 15 chr1 21272454 21272660 -221391693 + L2 LINE L2 3107 3313 0 298 278 166 30 chr1 21272639 21272808 -221391545 - MIR SINE MIR -59 203 12 * 285 318 66 0 chr1 21272994 21273145 -221391208 - MER104 DNA Tc2 -1 179 19 269 341 61 30 chr1 21273372 21273504 -221390849 + L2 LINE L2 3173 3308 -5 282 211 0 42 chr1 21274356 21274427 -221389926 - L2 LINE L2 -5 3308 3241 845 144 0 0 chr1 21274478 21274596 -221389757 + FLAM_C SINE Alu 1 118 -25 1101 158 15 15 chr1 21274660 21274856 -221389497 + MLT1D LTR MaLR 1 196 -309 642 179 0 26 chr1 21274857 21274974 -221389379 + FLAM_A SINE Alu 4 117 -16 964 166 7 0 chr1 21275004 21275155 -221389198 - FRAM SINE Alu -24 152 1 1150 209 21 28 chr1 21275185 21275334 -221389019 + MLT1D LTR MaLR 226 375 -130 1843 172 0 13 chr1 21275334 21275637 -221388716 + AluJo SINE Alu 1 299 -13 1150 209 21 28 chr1 21275637 21275648 -221388705 + MLT1D LTR MaLR 375 385 -120 2214 79 14 24 chr1 21275648 21275938 -221388415 + AluSx SINE Alu 13 299 -13 1150 209 21 28 chr1 21275938 21276058 -221388295 + MLT1D LTR MaLR 385 505 0 778 303 58 63 chr1 21276058 21276576 -221387777 - L2 LINE L2 -170 3143 2633 3293 89 16 0 chr1 21276576 21277027 -221387326 + LTR22A LTR ERVK 1 458 0 778 303 58 63 chr1 21277027 21277249 -221387104 - L2 LINE L2 -680 2633 2411 1008 178 0 6 chr1 21277280 21277443 -221386910 - AluJo SINE Alu -29 283 122 2359 277 154 31 chr1 21277446 21278570 -221385783 - L2 LINE L2 -978 2336 1075 1773 196 48 65 chr1 21278571 21278683 -221385670 + MLT1D LTR MaLR 13 125 -380 585 132 142 9 chr1 21278683 21278789 -221385564 + FLAM_A SINE Alu 1 120 -13 1773 196 48 65 chr1 21278789 21279208 -221385145 + MLT1D LTR MaLR 125 505 0 462 227 232 20 chr1 21279226 21279424 -221384929 - L2 LINE L2 -2284 1030 791 2141 102 53 0 chr1 21279424 21279708 -221384645 + AluSx SINE Alu 1 299 -13 771 209 62 25 chr1 21279708 21279926 -221384427 + MLT1F1 LTR MaLR 357 567 0 2091 117 19 13 chr1 21280087 21280222 -221384131 + AluSx SINE Alu 1 134 -178 2459 78 0 0 chr1 21280222 21280536 -221383817 + AluY SINE Alu 1 311 0 2091 117 19 13 chr1 21280536 21280707 -221383646 + AluSx SINE Alu 134 309 -3 391 242 75 8 chr1 21280744 21280864 -221383489 + L2 LINE L2 3183 3310 -3 1700 147 102 0 chr1 21280962 21281227 -221383126 + AluJb SINE Alu 1 292 -20 687 216 30 6 chr1 21281678 21281885 -221382468 + MIR SINE MIR 52 262 0 381 43 0 0 chr1 21282026 21282073 -221382280 + (CA)n Simple_repeat Simple_repeat 1 47 0 1258 114 55 9 chr1 21282409 21282629 -221381724 + MER30 DNA MER1_type 1 230 0 529 330 102 18 chr1 21282694 21283180 -221381173 - L2 LINE L2 -1 3312 2785 2589 227 11 4 chr1 21283193 21283726 -221380627 - MLT1F LTR MaLR -5 537 1 1549 127 75 34 chr1 21283815 21284082 -221380271 + AluJb SINE Alu 11 288 -24 2558 135 107 58 chr1 21284245 21284755 -221379598 - MER21A LTR ERV1 -24 907 266 1808 132 0 0 chr1 21284755 21285006 -221379347 - AluSx SINE Alu -7 305 55 2558 135 107 58 chr1 21285006 21285286 -221379067 - MER21A LTR ERV1 -665 266 1 349 313 106 38 chr1 21285637 21286005 -221378348 + HAL1 LINE L1 277 669 -1838 233 250 95 12 chr1 21286105 21286189 -221378164 + HAL1 LINE L1 780 870 -1637 2338 72 10 7 chr1 21286223 21286513 -221377840 - AluSx SINE Alu -21 291 1 370 288 174 0 chr1 21286712 21286844 -221377509 - MIR3 SINE MIR -18 190 36 741 171 0 0 chr1 21286910 21287033 -221377320 - FRAM SINE Alu -14 162 40 711 267 100 46 chr1 21287179 21287568 -221376785 + L2 LINE L2 2898 3307 -6 2402 91 3 3 chr1 21287763 21288071 -221376282 - AluSg SINE Alu -2 308 1 1074 147 81 59 chr1 21288237 21288315 -221376038 - MER21A LTR ERV1 -475 456 381 1776 138 0 0 chr1 21288315 21288569 -221375784 - AluSx SINE Alu -4 308 55 1074 147 81 59 chr1 21288569 21288849 -221375504 - MER21A LTR ERV1 -550 381 1 305 322 131 34 chr1 21289005 21289570 -221374783 + HAL1 LINE L1 50 669 -1838 233 250 95 12 chr1 21289670 21289754 -221374599 + HAL1 LINE L1 780 870 -1637 2303 80 10 3 chr1 21289788 21290077 -221374276 - AluSx SINE Alu -21 291 1 1746 168 31 7 chr1 21290159 21290445 -221373908 + AluSx SINE Alu 1 293 -19 4487 139 76 21 chr1 21290445 21290869 -221373484 + L1MB2 LINE L1 5225 5624 -547 2365 81 0 7 chr1 21290869 21291164 -221373189 - AluSq SINE Alu -17 296 4 4487 139 76 21 chr1 21291164 21291638 -221372715 + L1MB2 LINE L1 5624 6170 -1 1461 243 99 69 chr1 21291656 21292218 -221372135 + HAL1 LINE L1 963 1507 -1000 2121 117 133 0 chr1 21292218 21292594 -221371759 + MSTA LTR MaLR 3 428 0 1461 243 99 69 chr1 21292594 21292940 -221371413 + HAL1 LINE L1 1507 1841 -666 2543 73 0 13 chr1 21292940 21293254 -221371099 - AluY SINE Alu 0 311 2 1461 243 99 69 chr1 21293254 21293434 -221370919 + HAL1 LINE L1 1841 2014 -493 2517 67 0 13 chr1 21293434 21293746 -221370607 + AluY SINE Alu 1 308 -3 1461 243 99 69 chr1 21293746 21293934 -221370419 + HAL1 LINE L1 2014 2195 -312 2199 99 35 0 chr1 21293934 21294218 -221370135 + AluSx SINE Alu 1 294 -18 1461 243 99 69 chr1 21294218 21294359 -221369994 + HAL1 LINE L1 2195 2499 -8 1960 128 8 70 chr1 21294593 21294820 -221369533 + MER1B DNA MER1_type 2 201 -2509 2358 109 3 0 chr1 21294820 21295122 -221369231 + AluSx SINE Alu 1 303 -9 1960 128 8 70 chr1 21295122 21295252 -221369101 + MER1B DNA MER1_type 201 337 0 2046 153 0 0 chr1 21295600 21295895 -221368458 + AluSx SINE Alu 1 295 -17 1658 169 32 35 chr1 21296000 21296118 -221368235 + AluJb SINE Alu 1 118 -194 2622 57 3 0 chr1 21296118 21296418 -221367935 - AluSp SINE Alu -12 301 1 1658 169 32 35 chr1 21296418 21296612 -221367741 + AluJb SINE Alu 118 312 0 201 303 50 30 chr1 21297606 21297705 -221366648 + MIR SINE MIR 8 108 -154 200 195 0 24 chr1 21298380 21298421 -221365932 + G-rich Low_complexity Low_complexity 4 43 0 251 111 0 19 chr1 21299696 21299750 -221364603 + (GGA)n Simple_repeat Simple_repeat 3 55 0 36 23 0 0 chr1 21299811 21299854 -221364499 + GC_rich Low_complexity Low_complexity 1 43 0 815 153 0 0 chr1 21299915 21300033 -221364320 + FLAM_C SINE Alu 1 118 -25 476 233 28 50 chr1 21300555 21300735 -221363618 + GA-rich Low_complexity Low_complexity 2 177 0 25 0 0 0 chr1 21300866 21300891 -221363462 + GC_rich Low_complexity Low_complexity 1 25 0 192 77 0 0 chr1 21301340 21301366 -221362987 + (AGGGGG)n Simple_repeat Simple_repeat 5 30 0 449 325 83 38 chr1 21302062 21302302 -221362051 + MIR SINE MIR 2 252 -10 371 253 127 13 chr1 21302368 21302526 -221361827 - MIR3 SINE MIR -24 184 9 264 187 112 96 chr1 21302668 21302848 -221361505 - MIR SINE MIR -47 215 36 211 217 167 0 chr1 21303276 21303336 -221361017 - MIR SINE MIR -63 145 76 464 256 156 10 chr1 21303652 21303707 -221360646 + MIR SINE MIR 1 47 -215 1783 184 0 3 chr1 21303707 21304000 -221360353 + AluJo SINE Alu 1 292 -20 464 256 156 10 chr1 21304000 21304180 -221360173 + MIR SINE MIR 47 262 0 182 255 0 0 chr1 21304418 21304465 -221359888 + MIR3 SINE MIR 152 198 -10 459 0 0 0 chr1 21305064 21305115 -221359238 + (CA)n Simple_repeat Simple_repeat 1 51 0 217 170 64 0 chr1 21305184 21305231 -221359122 - L2 LINE L2 0 3272 3223 288 151 19 0 chr1 21305470 21305523 -221358830 - MIR3 SINE MIR -41 167 114 201 259 37 0 chr1 21306155 21306236 -221358117 - MIR SINE MIR -99 163 80 184 337 12 12 chr1 21306499 21306585 -221357768 - MIR SINE MIR -119 143 58 406 276 58 26 chr1 21307327 21307483 -221356870 + MIR SINE MIR 34 194 -68 224 275 0 25 chr1 21307897 21307977 -221356376 + GA-rich Low_complexity Low_complexity 3 80 0 205 222 44 0 chr1 21308774 21308819 -221355534 + L2 LINE L2 3218 3264 -8 414 257 94 13 chr1 21309321 21309498 -221354855 - MIR3 SINE MIR -3 205 11 585 283 106 4 chr1 21309750 21309976 -221354377 + MIR SINE MIR 14 262 0 323 282 59 72 chr1 21310098 21310275 -221354078 - L2 LINE L2 -186 3086 2908 1775 164 13 22 chr1 21310275 21310586 -221353767 - AluJo SINE Alu -4 308 1 323 282 59 72 chr1 21310586 21310824 -221353529 - L2 LINE L2 -364 2908 2678 2262 136 40 38 chr1 21311020 21311447 -221352906 + MSTA LTR MaLR 1 428 0 260 266 266 0 chr1 21311498 21311592 -221352761 + L2 LINE L2 3154 3272 0 2116 114 14 0 chr1 21311603 21311892 -221352461 + AluSq SINE Alu 1 293 -20 269 361 57 45 chr1 21313408 21313652 -221350701 + MIR SINE MIR 10 256 -6 258 328 22 50 chr1 21316299 21316479 -221347874 - MER5A DNA MER1_type 0 189 15 1752 177 3 14 chr1 21316816 21317098 -221347255 + AluJo SINE Alu 1 281 -31 2177 123 3 0 chr1 21317098 21317382 -221346971 - AluSx SINE Alu -27 285 1 1752 177 3 14 chr1 21317382 21317393 -221346960 + AluJo SINE Alu 281 291 -21 27 29 0 0 chr1 21317393 21317427 -221346926 + AT_rich Low_complexity Low_complexity 1 34 0 352 252 133 15 chr1 21317496 21317631 -221346722 - MIR SINE MIR -38 224 74 28 0 0 0 chr1 21317859 21317887 -221346466 + AT_rich Low_complexity Low_complexity 1 28 0 1930 166 7 0 chr1 21318423 21318718 -221345635 - AluJb SINE Alu -15 297 1 335 273 81 0 chr1 21318896 21318995 -221345358 - L2 LINE L2 -10 3262 3156 581 253 0 20 chr1 21319180 21319330 -221345023 + L2 LINE L2 3167 3313 0 664 189 69 6 chr1 21319331 21319506 -221344847 - MIR SINE MIR -3 259 74 368 301 87 20 chr1 21319563 21319762 -221344591 + MIR SINE MIR 40 249 -13 1794 175 7 0 chr1 21319851 21320160 -221344193 + AluJo SINE Alu 1 311 -1 283 215 0 32 chr1 21320164 21320257 -221344096 + GA-rich Low_complexity Low_complexity 3 92 0 302 160 0 0 chr1 21320627 21320677 -221343676 - AluSp/q SINE Alu -6 297 248 325 231 44 44 chr1 21320826 21320917 -221343436 - L2 LINE L2 -13 3259 3169 181 312 269 0 chr1 21320988 21321081 -221343272 + MIR SINE MIR 33 150 -58 2333 96 0 0 chr1 21321116 21321428 -221342925 + AluSx SINE Alu 1 312 0 1850 108 48 10 chr1 21321493 21321788 -221342565 + AluSx SINE Alu 1 306 -6 584 279 249 10 chr1 21321910 21322215 -221342138 + L2 LINE L2 2936 3313 0 293 283 94 25 chr1 21323025 21323184 -221341169 - MIR SINE MIR -44 218 49 430 292 146 41 chr1 21323279 21323498 -221340855 - MIR SINE MIR 0 262 21 1718 135 42 14 chr1 21323601 21323890 -221340463 - AluJo SINE Alu -15 297 1 463 288 43 33 chr1 21323905 21324055 -221340298 - L1MC/D LINE L1 -2129 5679 5525 2180 113 3 0 chr1 21324055 21324355 -221339998 - AluSx SINE Alu -11 301 1 463 288 43 33 chr1 21324355 21324388 -221339965 - L1MC/D LINE L1 -2283 5525 5494 232 236 14 0 chr1 21324740 21324812 -221339541 + L1MC/D LINE L1 5703 5775 -2033 1123 75 0 7 chr1 21325088 21325234 -221339119 + AluSq/x SINE Alu 1 145 -167 2182 89 6 25 chr1 21325234 21325549 -221338804 + AluSp SINE Alu 1 309 -4 233 317 123 45 chr1 21325556 21326081 -221338272 - L2 LINE L2 0 3272 2698 233 299 37 56 chr1 21326876 21326983 -221337370 - L2 LINE L2 -12 3301 3197 2122 106 0 20 chr1 21327088 21327390 -221336963 + AluSx SINE Alu 1 296 -16 1678 123 14 35 chr1 21327415 21327700 -221336653 + AluSq SINE Alu 1 279 -34 197 148 0 19 chr1 21327701 21327755 -221336598 + (GA)n Simple_repeat Simple_repeat 2 54 0 843 249 24 0 chr1 21327755 21327924 -221336429 + FRAM SINE Alu 2 174 -2 362 145 0 14 chr1 21327924 21327993 -221336360 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 2253 97 7 0 chr1 21328162 21328462 -221335891 + AluSc SINE Alu 1 302 -7 2175 106 0 3 chr1 21328846 21329148 -221335205 - AluSx SINE Alu -11 301 1 433 128 128 0 chr1 21329156 21329250 -221335103 - L1MA10 LINE L1 -1 6333 6228 1991 166 19 48 chr1 21329250 21329629 -221334724 - LOR1b LTR ERV1 0 461 94 2224 100 0 3 chr1 21329651 21329952 -221334401 - AluSg SINE Alu -10 300 1 2106 105 10 7 chr1 21329971 21330277 -221334076 - AluSx SINE Alu -5 307 1 10130 62 47 78 chr1 21330277 21330431 -221333922 + HUERS-P1 LTR ERV1 2210 2367 -3896 2181 101 7 0 chr1 21330431 21330739 -221333614 + AluSp SINE Alu 1 310 -3 10130 62 47 78 chr1 21330739 21331061 -221333292 + HUERS-P1 LTR ERV1 2367 2698 -3565 2081 91 25 7 chr1 21331061 21331346 -221333007 + AluSq SINE Alu 1 290 -23 10130 62 47 78 chr1 21331346 21331383 -221332970 + HUERS-P1 LTR ERV1 2698 2735 -3528 2381 87 0 0 chr1 21331383 21331695 -221332658 + AluSx SINE Alu 1 312 0 10130 62 47 78 chr1 21331695 21332477 -221331876 + HUERS-P1 LTR ERV1 2735 3540 -2723 1998 101 35 0 chr1 21332477 21332763 -221331590 + AluSx SINE Alu 5 300 -12 10130 62 47 78 chr1 21332763 21332957 -221331396 + HUERS-P1 LTR ERV1 3540 3739 -2524 2233 88 3 0 chr1 21332957 21333251 -221331102 + AluSq SINE Alu 1 295 -18 1977 112 35 0 chr1 21333257 21333543 -221330810 + AluSx SINE Alu 1 296 -16 10130 62 47 78 chr1 21333543 21333737 -221330616 + HUERS-P1 LTR ERV1 3744 3851 -2412 1130 58 7 0 chr1 21333738 21333876 -221330477 - AluSp SINE Alu -174 139 1 889 188 38 0 chr1 21333900 21334060 -221330293 + FRAM SINE Alu 1 166 0 214 303 50 30 chr1 21335071 21335170 -221329183 + MIR SINE MIR 8 108 -154 200 195 0 24 chr1 21335845 21335886 -221328467 + G-rich Low_complexity Low_complexity 4 43 0 233 115 0 19 chr1 21337163 21337215 -221327138 + (GGA)n Simple_repeat Simple_repeat 2 52 0 36 23 0 0 chr1 21337276 21337319 -221327034 + GC_rich Low_complexity Low_complexity 1 43 0 855 154 37 37 chr1 21339531 21339693 -221324660 + AluJo SINE Alu 126 287 -25 300 27 0 0 chr1 21339781 21339818 -221324535 + (CA)n Simple_repeat Simple_repeat 2 38 0 423 295 35 95 chr1 21340947 21341270 -221323083 + L2 LINE L2 2845 3135 -137 2171 97 10 0 chr1 21341270 21341569 -221322784 - AluSp SINE Alu -11 302 1 423 295 35 95 chr1 21341569 21341696 -221322657 + L2 LINE L2 3135 3268 -4 355 324 1 39 chr1 21342098 21342246 -221322107 + MIR3 SINE MIR 1 144 -64 2259 103 3 0 chr1 21342246 21342557 -221321796 + AluSq SINE Alu 1 312 -1 355 324 1 39 chr1 21342557 21342576 -221321777 + MIR3 SINE MIR 144 162 -46 2259 63 0 7 chr1 21342577 21342894 -221321459 - AluY SINE Alu 0 315 1 1311 179 0 105 chr1 21342902 21343079 -221321274 - AluY SINE Alu -21 290 161 369 0 0 0 chr1 21343079 21343120 -221321233 + (TG)n Simple_repeat Simple_repeat 1 41 0 1311 179 0 105 chr1 21343120 21343266 -221321087 - AluY SINE Alu -150 161 1 28 29 0 0 chr1 21343266 21343301 -221321052 + AT_rich Low_complexity Low_complexity 1 35 0 856 159 99 7 chr1 21343315 21343466 -221320887 - AluJb SINE Alu -19 293 129 212 325 104 0 chr1 21343822 21343899 -221320454 + L2 LINE L2 3188 3272 0 568 254 101 0 chr1 21344429 21344567 -221319786 + MLT1J2 LTR MaLR 25 176 -274 1147 160 80 9 chr1 21344578 21344790 -221319563 + AluJo SINE Alu 85 311 -1 552 225 122 10 chr1 21344817 21345020 -221319333 + MLT1J1 LTR MaLR 224 450 0 1363 262 73 67 chr1 21345021 21345488 -221318865 + MLT1K LTR MaLR 45 517 -71 2133 95 0 14 chr1 21345488 21345783 -221318570 + AluSg SINE Alu 1 291 -19 1363 262 73 67 chr1 21345783 21345849 -221318504 + MLT1K LTR MaLR 517 581 -7 301 270 54 103 chr1 21346359 21346563 -221317790 + MIR SINE MIR 36 229 -33 1835 115 0 0 chr1 21347412 21347665 -221316688 + AluSq SINE Alu 1 253 -60 256 125 0 21 chr1 21347765 21347813 -221316540 + (TCCCC)n Simple_repeat Simple_repeat 1 47 0 1456 196 43 7 chr1 21347813 21348094 -221316259 - AluJo SINE Alu -21 291 1 225 256 44 131 chr1 21348523 21348660 -221315693 + MLT1K LTR MaLR 69 193 -395 1970 155 7 0 chr1 21349157 21349467 -221314886 - AluSx SINE Alu 0 312 1 597 294 21 0 chr1 21349954 21350141 -221314212 + MIR SINE MIR 66 256 -6 2204 86 0 0 chr1 21350269 21350604 -221313749 - AluSg SINE Alu 0 335 1 972 267 122 31 chr1 21350606 21351075 -221313278 + L2 LINE L2 2779 3266 -47 1597 179 86 24 chr1 21351100 21351434 -221312919 + MLT1A2 LTR MaLR 4 358 -16 953 189 112 103 chr1 21351434 21351783 -221312570 - MSTD LTR MaLR 0 396 45 242 135 0 0 chr1 21351857 21351894 -221312459 - MSTD LTR MaLR -391 37 1 205 205 0 0 chr1 21352031 21352070 -221312283 + A-rich Low_complexity Low_complexity 1 39 0 369 323 31 0 chr1 21352304 21352431 -221311922 - MIR SINE MIR -14 248 118 2071 93 31 7 chr1 21352483 21352774 -221311579 - AluY SINE Alu -13 298 1 1899 163 0 3 chr1 21352879 21353186 -221311167 + AluJb SINE Alu 1 306 -6 183 180 20 80 chr1 21353305 21353355 -221310998 - MER5A DNA MER1_type 0 189 143 559 149 9 28 chr1 21353366 21353473 -221310880 - FLAM_A SINE Alu -4 138 34 622 196 27 34 chr1 21353473 21353621 -221310732 - MER5A DNA MER1_type -40 149 3 2315 81 0 13 chr1 21353780 21354078 -221310275 - AluSq SINE Alu -19 294 1 1436 118 9 22 chr1 21354078 21354306 -221310047 - AluJb SINE Alu -10 302 78 2277 103 0 3 chr1 21355123 21355435 -221308918 - AluSx SINE Alu -1 311 1 1755 176 7 3 chr1 21356066 21356372 -221307981 + AluJo SINE Alu 1 307 -5 1870 161 3 3 chr1 21356819 21357130 -221307223 - AluJo SINE Alu -1 311 1 257 323 20 10 chr1 21357241 21357340 -221307013 - L2 LINE L2 0 3272 3173 232 321 0 12 chr1 21357554 21357638 -221306715 - MIR SINE MIR -6 256 174 2160 88 27 0 chr1 21357805 21358101 -221306252 + AluSx SINE Alu 1 304 -8 245 327 59 10 chr1 21358115 21358216 -221306137 - MIR SINE MIR -128 134 29 493 252 0 0 chr1 21358381 21358484 -221305869 + L2 LINE L2 3205 3307 -6 2394 68 0 7 chr1 21358573 21358883 -221305470 - AluY SINE Alu -3 308 1 422 289 20 85 chr1 21359138 21359339 -221305014 - L2 LINE L2 0 3272 3085 238 310 45 39 chr1 21359584 21359739 -221304614 + MIR SINE MIR 21 176 -86 351 283 102 17 chr1 21360125 21360331 -221304022 + MIR3 SINE MIR 4 231 -31 1823 132 0 7 chr1 21361387 21361660 -221302693 + AluJo SINE Alu 35 305 -7 415 306 2 0 chr1 21361746 21361872 -221302481 + MIR SINE MIR 34 160 -75 613 321 0 16 chr1 21361894 21362087 -221302266 + MIR SINE MIR 20 209 -53 203 244 0 0 chr1 21362756 21362801 -221301552 + (CCCTG)n Simple_repeat Simple_repeat 1 45 0 1894 134 7 7 chr1 21362978 21363276 -221301077 - AluSx SINE Alu -14 298 1 2035 95 3 11 chr1 21363565 21363875 -221300478 - AluSx SINE Alu 0 308 1 259 264 0 110 chr1 21364269 21364360 -221299993 + L1ME3A LINE L1 6052 6132 -38 332 219 32 0 chr1 21364475 21364598 -221299755 + (CA)n Simple_repeat Simple_repeat 2 128 0 282 339 18 9 chr1 21364598 21364707 -221299646 + L2 LINE L2 3189 3298 -15 1055 155 80 5 chr1 21364708 21364908 -221299445 + AluJb SINE Alu 85 299 -13 229 314 0 0 chr1 21365368 21365438 -221298915 - MIR3 SINE MIR -54 154 85 2283 109 0 0 chr1 21365756 21366060 -221298293 + AluSx SINE Alu 1 304 -8 182 333 14 0 chr1 21366185 21366254 -221298099 + L2 LINE L2 2898 2967 -305 420 275 41 56 chr1 21366332 21366574 -221297779 - MIR SINE MIR -3 259 24 224 274 27 0 chr1 21366735 21366808 -221297545 - MIR SINE MIR -115 147 73 216 275 193 15 chr1 21367615 21367956 -221296397 + L2 LINE L2 2637 3066 -247 209 267 0 0 chr1 21368308 21368353 -221296000 - MIR SINE MIR -110 152 108 244 118 294 15 chr1 21368773 21368841 -221295512 - MIR SINE MIR -62 146 60 287 65 22 0 chr1 21368856 21368902 -221295451 + (CA)n Simple_repeat Simple_repeat 2 48 0 2302 100 0 17 chr1 21368944 21369244 -221295109 - AluSx SINE Alu -17 295 1 2516 73 0 10 chr1 21370418 21370732 -221293621 - AluY SINE Alu 0 311 1 195 37 0 0 chr1 21370855 21370882 -221293471 + L2 LINE L2 3028 3054 -218 211 325 102 30 chr1 21371427 21371593 -221292760 + MIR SINE MIR 70 247 -15 2144 141 0 25 chr1 21371752 21372072 -221292281 + AluSx SINE Alu 1 312 0 982 200 11 0 chr1 21372276 21372461 -221291892 + MIR SINE MIR 2 188 -74 1115 133 13 0 chr1 21372901 21373059 -221291294 - FRAM SINE Alu -8 168 9 2579 51 0 3 chr1 21373074 21373369 -221290984 - AluY SINE Alu -17 294 1 2025 161 0 3 chr1 21373474 21373779 -221290574 + AluJb SINE Alu 1 304 -8 518 149 9 28 chr1 21373961 21374068 -221290285 - FLAM_A SINE Alu -4 138 34 616 196 27 34 chr1 21374068 21374216 -221290137 - MER5A DNA MER1_type -40 149 3 2460 81 0 13 chr1 21374374 21374672 -221289681 - AluSq SINE Alu -19 294 1 1526 118 9 22 chr1 21374672 21374900 -221289453 - AluJb SINE Alu -10 302 78 2412 103 0 3 chr1 21375717 21376029 -221288324 - AluSx SINE Alu -1 311 1 1874 176 7 3 chr1 21376660 21376966 -221287387 + AluJo SINE Alu 1 307 -5 1988 161 3 3 chr1 21377413 21377724 -221286629 - AluJo SINE Alu -1 311 1 245 323 20 10 chr1 21377835 21377934 -221286419 - L2 LINE L2 0 3272 3173 229 321 0 12 chr1 21378148 21378232 -221286121 - MIR SINE MIR -6 256 174 2298 88 27 0 chr1 21378399 21378695 -221285658 + AluSx SINE Alu 1 304 -8 237 327 59 10 chr1 21378709 21378810 -221285543 - MIR SINE MIR -128 134 29 487 252 0 0 chr1 21378975 21379078 -221285275 + L2 LINE L2 3205 3307 -6 2540 68 0 7 chr1 21379167 21379477 -221284876 - AluY SINE Alu -3 308 1 407 289 20 85 chr1 21379732 21379933 -221284420 - L2 LINE L2 0 3272 3085 217 310 45 39 chr1 21380178 21380333 -221284020 + MIR SINE MIR 21 176 -86 335 265 98 23 chr1 21380719 21380851 -221283502 + MIR3 SINE MIR 4 145 -63 1935 132 0 7 chr1 21381981 21382254 -221282099 + AluJo SINE Alu 35 305 -7 408 306 2 0 chr1 21382340 21382466 -221281887 + MIR SINE MIR 34 160 -75 609 321 0 16 chr1 21382488 21382681 -221281672 + MIR SINE MIR 20 209 -53 203 244 0 0 chr1 21383351 21383396 -221280957 + (CCCTG)n Simple_repeat Simple_repeat 1 45 0 1966 126 10 10 chr1 21383577 21383871 -221280482 - AluSx SINE Alu -18 294 1 1803 181 23 16 chr1 21384026 21384336 -221280017 + AluJo SINE Alu 1 312 0 487 283 40 0 chr1 21384580 21384732 -221279621 - MIR SINE MIR 0 262 105 1759 158 14 11 chr1 21384753 21385032 -221279321 + AluJo SINE Alu 1 280 -32 369 0 0 0 chr1 21385032 21385073 -221279280 + (TAA)n Simple_repeat Simple_repeat 1 41 0 277 276 112 33 chr1 21385144 21385296 -221279057 + MIR SINE MIR 2 165 -97 740 276 79 21 chr1 21385413 21385743 -221278610 + MLT1K LTR MaLR 210 558 -30 412 284 0 0 chr1 21385769 21385864 -221278489 + MIR SINE MIR 160 254 -8 362 289 61 0 chr1 21385883 21385997 -221278356 - L2 LINE L2 -36 3236 3116 2286 98 0 28 chr1 21386121 21386439 -221277914 - AluSg SINE Alu -1 309 1 330 220 42 25 chr1 21386698 21386709 -221277644 + L1M LINE L1 5256 5265 -2777 2611 42 0 16 chr1 21386709 21387017 -221277336 - AluY SINE Alu -7 304 2 330 220 42 25 chr1 21387017 21387123 -221277230 + L1M LINE L1 5265 5375 -2667 1988 154 0 10 chr1 21387249 21387560 -221276793 + AluJb SINE Alu 1 308 -4 588 330 74 24 chr1 21387593 21388009 -221276344 + L1ME LINE L1 5255 5698 -464 1967 155 0 16 chr1 21388022 21388339 -221276014 - AluSx SINE Alu 0 312 1 761 273 15 25 chr1 21388342 21388735 -221275618 - L1M4 LINE L1 -1107 5039 4609 845 146 16 0 chr1 21388862 21388985 -221275368 + FLAM_C SINE Alu 1 125 -18 322 254 36 42 chr1 21389023 21389188 -221275165 - L1M4 LINE L1 -2658 3488 3325 * 470 299 27 58 chr1 21389176 21389344 -221275009 - L1M4 LINE L1 -3381 2765 2593 2490 60 0 3 chr1 21389344 21389645 -221274708 + AluY SINE Alu 1 300 -11 470 299 27 58 chr1 21389645 21389921 -221274432 - L1M4 LINE L1 -3553 2593 2335 417 214 118 56 chr1 21389942 21390007 -221274346 - Charlie4 DNA MER1_type -1 1960 1900 2180 138 0 13 chr1 21390007 21390319 -221274034 - AluSx SINE Alu -4 308 1 2276 93 0 0 chr1 21390328 21390632 -221273721 - AluSg SINE Alu 0 304 1 417 214 118 56 chr1 21390632 21390732 -221273621 - Charlie4 DNA MER1_type -68 1893 1772 2119 144 0 0 chr1 21390732 21391031 -221273322 - AluSx SINE Alu -13 299 1 277 361 68 5 chr1 21391769 21391960 -221272393 + LTR67 LTR ERVL 352 554 -3 1951 154 7 0 chr1 21392351 21392662 -221271691 + AluJb SINE Alu 1 313 0 2306 66 45 0 chr1 21392675 21392962 -221271391 + AluY SINE Alu 1 300 -11 1053 243 37 90 chr1 21393106 21393225 -221271128 - L2 LINE L2 0 3313 3189 2362 112 3 0 chr1 21393225 21393530 -221270823 - AluSx SINE Alu -6 306 1 1053 243 37 90 chr1 21393530 21393842 -221270511 - L2 LINE L2 -124 3189 2905 1873 94 134 7 chr1 21393922 21394197 -221270156 + AluY SINE Alu 1 310 -1 1340 112 0 0 chr1 21394350 21394519 -221269834 - AluSx SINE Alu -143 169 1 182 293 26 43 chr1 21395243 21395359 -221268994 - L3 LINE CR1 -341 1236 1123 * 439 228 148 0 chr1 21395356 21395505 -221268848 + L2 LINE L2 2909 3079 -193 239 316 53 0 chr1 21395632 21395727 -221268626 - L2 LINE L2 -250 3022 2923 185 207 17 69 chr1 21395864 21395922 -221268431 - L2 LINE L2 -233 3080 3026 292 87 0 0 chr1 21396088 21396194 -221268159 - Alu SINE Alu 0 360 255 587 146 23 11 chr1 21396306 21396483 -221267870 + CT-rich Low_complexity Low_complexity 1 179 0 617 192 24 0 chr1 21396487 21396612 -221267741 - FRAM SINE Alu -11 165 38 1074 283 76 43 chr1 21396620 21397132 -221267221 + L2 LINE L2 2005 2533 -781 277 114 0 0 chr1 21397142 21397186 -221267167 + L1P5 LINE L1 5748 5791 -360 309 258 34 45 chr1 21397187 21397276 -221267077 + L1MC4 LINE L1 6614 6701 -1341 2562 52 43 22 chr1 21397276 21397645 -221266708 + L1PB1 LINE L1 5774 6150 -1 392 339 203 10 chr1 21397656 21398295 -221266058 + L2 LINE L2 2531 3296 -17 234 340 20 0 chr1 21398668 21398768 -221265585 - MIR SINE MIR 0 262 161 888 235 161 37 chr1 21398771 21399175 -221265178 - MLT1H LTR MaLR 0 549 96 2528 80 0 0 chr1 21399233 21399544 -221264809 - AluY SINE Alu 0 311 1 345 243 39 0 chr1 21399545 21399648 -221264705 - MIR SINE MIR -97 165 59 247 208 0 0 chr1 21399822 21399870 -221264483 + MIR SINE MIR 97 144 -118 2202 125 0 10 chr1 21399923 21400227 -221264126 + AluSx SINE Alu 1 301 -11 573 229 19 32 chr1 21400243 21400400 -221263953 + L2 LINE L2 3159 3313 0 1031 181 108 77 chr1 21400593 21400918 -221263435 - MLT1J2 LTR MaLR -113 337 3 481 278 21 98 chr1 21400994 21401228 -221263125 + L2 LINE L2 3094 3309 -4 2513 132 45 22 chr1 21401228 21401692 -221262661 - L1M1 LINE L1 -561 5739 5265 1720 117 0 0 chr1 21401692 21401922 -221262431 + AluSx SINE Alu 64 293 -19 2642 160 13 23 chr1 21401923 21402096 -221262257 + L1MA4 LINE L1 5777 5950 -350 2448 108 0 0 chr1 21402096 21402402 -221261951 + AluSx SINE Alu 1 306 -6 2642 160 13 23 chr1 21402402 21402754 -221261599 + L1MA4 LINE L1 5950 6297 -3 2114 123 7 7 chr1 21403078 21403387 -221260966 + AluSx SINE Alu 1 309 -3 1972 178 0 10 chr1 21403507 21403821 -221260532 - AluJb SINE Alu -1 311 1 253 295 51 0 chr1 21403825 21403903 -221260450 - MIR SINE MIR -61 147 66 2462 88 3 0 chr1 21404248 21404555 -221259798 + AluSg SINE Alu 1 308 -2 695 270 100 46 chr1 21404759 21405148 -221259205 - L2 LINE L2 -6 3307 2898 814 163 0 0 chr1 21405294 21405417 -221258936 + FRAM SINE Alu 40 162 -14 370 288 174 0 chr1 21405483 21405615 -221258738 + MIR3 SINE MIR 36 190 -18 2475 93 0 6 chr1 21405814 21406127 -221258226 + AluSx SINE Alu 1 311 -1 1557 114 9 22 chr1 21406943 21407171 -221257182 + AluJb SINE Alu 78 302 -10 2460 81 0 13 chr1 21407171 21407469 -221256884 + AluSq SINE Alu 1 294 -19 616 196 27 34 chr1 21407628 21407776 -221256577 + MER5A DNA MER1_type 3 149 -40 518 149 9 28 chr1 21407776 21407883 -221256470 + FLAM_A SINE Alu 34 138 -4 2025 161 0 3 chr1 21408065 21408370 -221255983 - AluJb SINE Alu -8 304 1 2202 90 31 7 chr1 21408475 21408764 -221255589 + AluY SINE Alu 1 296 -15 360 323 31 0 chr1 21408818 21408945 -221255408 + MIR SINE MIR 118 248 -14 240 135 0 0 chr1 21409354 21409391 -221254962 + MSTD LTR MaLR 1 37 -391 935 189 112 103 chr1 21409465 21409814 -221254539 + MSTD LTR MaLR 45 396 0 * 1568 179 90 24 chr1 21409814 21410147 -221254206 - MLT1A2 LTR MaLR -16 358 4 951 262 124 32 chr1 21410172 21410640 -221253713 - L2 LINE L2 -47 3266 2779 2221 92 7 0 chr1 21410642 21411005 -221253348 + AluSg SINE Alu 1 365 0 576 294 21 0 chr1 21411133 21411320 -221253033 - MIR SINE MIR -6 256 66 2093 155 7 0 chr1 21411807 21412117 -221252236 + AluSx SINE Alu 1 312 0 1594 192 43 7 chr1 21413179 21413460 -221250893 + AluJo SINE Alu 1 291 -21 387 105 0 0 chr1 21413460 21413517 -221250836 + (GGGGA)n Simple_repeat Simple_repeat 1 57 0 299 261 22 92 chr1 21413542 21413726 -221250627 - MLT1J LTR MaLR -50 461 291 2240 120 7 0 chr1 21413751 21414052 -221250301 - AluSg SINE Alu -7 303 1 883 312 66 27 chr1 21414563 21415047 -221249306 - MLT1J LTR MaLR -8 503 1 202 217 0 17 chr1 21415371 21415431 -221248922 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1700 152 62 42 chr1 21415524 21415880 -221248473 - MLT1A1 LTR MaLR 0 365 3 340 256 32 96 chr1 21416449 21416574 -221247779 - L2 LINE L2 0 3313 3197 2546 61 0 3 chr1 21416710 21417006 -221247347 + AluY SINE Alu 1 295 -16 1091 139 13 0 chr1 21417020 21417178 -221247175 + FRAM SINE Alu 9 168 -8 1169 88 0 0 chr1 21417532 21417679 -221246674 + AluYa5 SINE Alu 147 293 -18 408 232 77 88 chr1 21417681 21417862 -221246491 - MIR3 SINE MIR -29 179 1 221 273 133 49 chr1 21419509 21419652 -221244701 + MIR3 SINE MIR 2 156 -52 306 0 0 0 chr1 21419726 21419760 -221244593 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2012 134 0 0 chr1 21419767 21420042 -221244311 - AluSx SINE Alu -37 275 1 620 244 49 49 chr1 21420108 21420333 -221244020 + MIR SINE MIR 37 262 0 2560 48 0 7 chr1 21420535 21420829 -221243524 + AluY SINE Alu 1 292 -19 190 290 16 16 chr1 21420858 21420920 -221243433 - L2 LINE L2 -493 2821 2760 201 297 161 25 chr1 21420969 21421087 -221243266 + L2 LINE L2 3179 3312 -1 210 118 0 0 chr1 21421375 21421409 -221242944 + (TTGG)n Simple_repeat Simple_repeat 1 34 0 498 203 85 8 chr1 21421415 21421533 -221242820 + L2 LINE L2 3182 3308 -5 236 268 56 0 chr1 21421521 21421592 -221242761 + MIR SINE MIR 172 246 -16 * 183 42 0 0 chr1 21421597 21421621 -221242732 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2304 102 3 0 chr1 21421623 21421917 -221242436 - AluSg SINE Alu -1 309 15 309 284 59 18 chr1 21422116 21422271 -221242082 - MIR SINE MIR -54 208 50 1844 192 0 0 chr1 21422291 21422593 -221241760 + AluJo SINE Alu 2 303 -9 2227 101 0 0 chr1 21422709 21423011 -221241342 - AluSc SINE Alu 0 302 1 194 125 0 0 chr1 21423159 21423191 -221241162 + L2 LINE L2 2916 2947 -325 2108 138 3 3 chr1 21423191 21423495 -221240858 - AluSx SINE Alu -8 304 1 1540 174 91 46 chr1 21423621 21424012 -221240341 + LTR7 LTR ERV1 1 414 -36 2261 71 60 0 chr1 21424012 21424295 -221240058 + AluSg SINE Alu 1 300 -10 1540 174 91 46 chr1 21424295 21424334 -221240019 + LTR7 LTR ERV1 414 450 0 344 278 0 11 chr1 21424337 21424427 -221239926 + MIR SINE MIR 170 258 -4 181 303 11 22 chr1 21424428 21424517 -221239836 + L2 LINE L2 2992 3079 -193 2276 104 0 3 chr1 21424539 21424837 -221239516 - AluSq SINE Alu -16 297 1 605 289 85 82 chr1 21425409 21425676 -221238677 - L2 LINE L2 0 3313 3048 1118 199 9 5 chr1 21425676 21425897 -221238456 + MER58A DNA MER1_type 3 224 0 605 289 85 82 chr1 21425897 21426196 -221238157 - L2 LINE L2 -265 3048 2739 2420 72 0 3 chr1 21426200 21426493 -221237860 - AluSg SINE Alu -18 292 1 344 148 0 0 chr1 21426493 21426554 -221237799 + L1MB3 LINE L1 6113 6173 -10 843 106 8 8 chr1 21426686 21426818 -221237535 + FLAM_C SINE Alu 2 133 0 1823 171 3 0 chr1 21427056 21427342 -221237011 + AluJb SINE Alu 5 291 -21 338 284 53 38 chr1 21427346 21427546 -221236807 - MIR SINE MIR -58 204 3 182 242 45 61 chr1 21428484 21428550 -221235803 - MIR SINE MIR -65 143 79 397 188 0 12 chr1 21428608 21428688 -221235665 + MIR SINE MIR 102 180 -82 2604 84 0 40 chr1 21428712 21429016 -221235337 + THE1B LTR MaLR 1 290 -74 2061 109 0 7 chr1 21429016 21429330 -221235023 - AluSx SINE Alu 0 312 1 2604 84 0 40 chr1 21429330 21429403 -221234950 + THE1B LTR MaLR 290 364 0 448 241 197 31 chr1 21429561 21429775 -221234578 - MIR SINE MIR -24 238 3 269 327 147 5 chr1 21430571 21430759 -221233594 - MIR SINE MIR -27 235 24 552 315 25 15 chr1 21430769 21430966 -221233387 - MIR SINE MIR -24 238 40 2337 97 0 3 chr1 21430966 21431266 -221233087 + AluSx SINE Alu 1 299 -13 2104 121 0 0 chr1 21431898 21432206 -221232147 - AluSg SINE Alu 0 308 1 1187 194 6 118 chr1 21432232 21432562 -221231791 + AluJo SINE Alu 1 293 -9 2182 119 0 26 chr1 21432564 21432876 -221231477 + AluSq SINE Alu 1 304 -9 2336 110 0 0 chr1 21432992 21433293 -221231060 - AluSx SINE Alu -11 301 1 2582 74 0 0 chr1 21433311 21433620 -221230733 - AluY SINE Alu -2 309 1 254 290 226 7 chr1 21433620 21433775 -221230578 - L2 LINE L2 -6 3307 3119 1944 156 0 46 chr1 21433809 21433946 -221230407 + AluJb SINE Alu 1 143 -169 2248 97 4 0 chr1 21433946 21434246 -221230107 + AluSg SINE Alu 1 301 0 1944 156 0 46 chr1 21434246 21434433 -221229920 + AluJb SINE Alu 143 312 0 2629 61 3 0 chr1 21434809 21435119 -221229234 - AluSp SINE Alu -2 311 1 2232 129 0 7 chr1 21435240 21435550 -221228803 + AluSx SINE Alu 1 308 -4 1469 244 106 8 chr1 21435590 21436076 -221228277 - MLT1F1 LTR MaLR -3 564 33 855 195 17 29 chr1 21436280 21436294 -221228059 + AluJo SINE Alu 119 132 -180 738 173 0 23 chr1 21436294 21436427 -221227926 + FLAM_C SINE Alu 1 130 -3 855 195 17 29 chr1 21436427 21436444 -221227909 + AluJo SINE Alu 132 148 -164 3828 139 48 29 chr1 21436444 21437158 -221227195 - LTR8A LTR ERV1 0 727 1 855 195 17 29 chr1 21437158 21437299 -221227054 + AluJo SINE Alu 148 290 -22 1440 44 0 0 chr1 21437299 21437307 -221227046 + (GGAA)n Simple_repeat Simple_repeat 1 188 0 1440 44 0 0 chr1 21437307 21437487 -221226866 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 553 136 8 8 chr1 21437721 21437839 -221226514 + GA-rich Low_complexity Low_complexity 3 120 0 299 286 11 60 chr1 21437842 21438024 -221226329 + HAL1 LINE L1 2333 2505 -2 713 135 8 38 chr1 21438051 21438184 -221226169 + FLAM_C SINE Alu 15 143 0 346 217 35 25 chr1 21438489 21438636 -221225717 - L2 LINE L2 -43 3229 3026 3601 98 3 64 chr1 21439509 21440120 -221224233 + MER4B LTR ERV1 1 574 -36 275 106 0 0 chr1 21440374 21440421 -221223932 + L1MA3 LINE L1 6254 6300 -5 2439 101 0 0 chr1 21440442 21440748 -221223605 + AluSp SINE Alu 1 306 -7 2474 82 8 8 chr1 21440774 21441129 -221223224 - THE1A LTR MaLR 0 355 1 1507 188 44 4 chr1 21441177 21441477 -221222876 + AluJo SINE Alu 1 311 0 2862 199 82 66 chr1 21442155 21443036 -221221317 - MER4D LTR ERV1 -8 895 1 1534 141 38 62 chr1 21443066 21443356 -221220997 - AluJo SINE Alu -21 291 9 23 0 0 0 chr1 21443507 21443530 -221220823 + AT_rich Low_complexity Low_complexity 1 23 0 1339 165 84 60 chr1 21443694 21443745 -221220608 + LTR47A LTR ERVL 2 50 -402 2081 138 16 3 chr1 21443745 21444049 -221220304 - AluSx SINE Alu -4 308 1 1339 165 84 60 chr1 21444049 21444331 -221220022 + LTR47A LTR ERVL 50 343 -109 217 307 53 13 chr1 21444514 21444589 -221219764 + MIR SINE MIR 66 143 -65 231 335 104 9 chr1 21444686 21444865 -221219488 + MIR SINE MIR 38 235 -27 22 0 0 0 chr1 21445032 21445054 -221219299 + GC_rich Low_complexity Low_complexity 1 22 0 228 172 0 35 chr1 21445102 21445160 -221219193 + (CGG)n Simple_repeat Simple_repeat 1 56 0 25 0 0 0 chr1 21445257 21445282 -221219071 + GC_rich Low_complexity Low_complexity 1 25 0 288 242 168 54 chr1 21445854 21446003 -221218350 - MIR SINE MIR -82 180 15 761 231 60 28 chr1 21446180 21446396 -221217957 - MLT2D LTR ERVL 0 414 192 392 262 78 14 chr1 21446423 21446564 -221217789 - MIR3 SINE MIR -51 157 8 2291 86 0 0 chr1 21446837 21447116 -221217237 + AluSg SINE Alu 1 279 -31 2603 64 0 3 chr1 21447183 21447495 -221216858 + AluY SINE Alu 1 311 0 1596 204 0 0 chr1 21447501 21447765 -221216588 + AluJo SINE Alu 1 264 -48 236 132 61 26 chr1 21447800 21447914 -221216439 + (TA)n Simple_repeat Simple_repeat 1 118 0 2244 98 10 7 chr1 21447961 21448258 -221216095 - AluSg SINE Alu -12 298 1 1806 155 32 36 chr1 21449975 21450284 -221214069 + AluJb SINE Alu 1 308 -4 488 245 0 0 chr1 21450293 21450399 -221213954 - MER5A DNA MER1_type -80 109 4 225 309 154 18 chr1 21451619 21451729 -221212624 + L2 LINE L2 3137 3261 -11 217 301 61 49 chr1 21452102 21452265 -221212088 - L2 LINE L2 -174 3098 2934 1912 118 7 15 chr1 21452384 21452656 -221211697 + AluJb SINE Alu 13 282 -30 189 278 61 26 chr1 21453314 21453429 -221210924 + L2 LINE L2 2799 2917 -397 347 232 107 47 chr1 21453827 21454036 -221210317 - LTR45 LTR ERV1 0 525 264 2049 125 3 3 chr1 21454284 21454572 -221209781 - AluJb SINE Alu -13 299 12 392 277 45 0 chr1 21455038 21455150 -221209203 - L2 LINE L2 0 3272 3156 431 274 44 30 chr1 21455167 21455302 -221209051 + L2 LINE L2 3134 3270 -2 1673 109 68 48 chr1 21455446 21455757 -221208596 - MER44D DNA MER2_type -22 587 1 238 200 0 0 chr1 21455777 21455822 -221208531 - MIR SINE MIR -188 74 30 281 183 0 14 chr1 21455847 21455918 -221208435 + (TGGA)n Simple_repeat Simple_repeat 2 71 0 227 313 15 0 chr1 21455940 21456007 -221208346 + L2 LINE L2 3246 3313 0 2329 104 3 0 chr1 21456823 21457121 -221207232 + AluSx SINE Alu 1 299 -13 1758 150 6 72 chr1 21457608 21457942 -221206411 + AluJo SINE Alu 1 312 0 529 251 27 114 chr1 21457942 21457980 -221206373 + L3 LINE CR1 1346 1386 -191 2399 84 0 0 chr1 21457980 21458267 -221206086 + AluSc SINE Alu 1 287 -22 529 251 27 114 chr1 21458267 21458447 -221205906 + L3 LINE CR1 1386 1545 -32 1957 127 25 0 chr1 21458472 21458663 -221205690 - AluSx SINE Alu 0 324 121 2335 74 0 3 chr1 21458663 21458948 -221205405 - AluY SINE Alu -2 309 26 1957 127 25 0 chr1 21458948 21459073 -221205280 - AluSx SINE Alu -203 121 1 2514 83 0 0 chr1 21459083 21459385 -221204968 - AluSg SINE Alu -8 302 1 1820 115 63 17 chr1 21459437 21459724 -221204629 - AluSx SINE Alu -11 301 2 2212 138 0 0 chr1 21461099 21461403 -221202950 + AluSx SINE Alu 1 304 -8 2321 88 0 3 chr1 21463432 21463743 -221200610 - AluY SINE Alu 0 310 1 2222 126 3 0 chr1 21466478 21466779 -221197574 - AluSx SINE Alu -10 302 1 722 153 23 8 chr1 21466795 21466926 -221197427 - FLAM_C SINE Alu 0 133 1 716 297 169 5 chr1 21468616 21469242 -221195111 - L2 LINE L2 -188 3125 2395 886 198 94 15 chr1 21469499 21469701 -221194652 + MER20 DNA MER1_type 1 218 -1 1669 200 87 78 chr1 21470073 21470460 -221193893 - MER113 DNA MER1_type? 0 521 126 1965 147 3 10 chr1 21470460 21470774 -221193579 - AluJo SINE Alu 0 312 1 1669 200 87 78 chr1 21470774 21470902 -221193451 - MER113 DNA MER1_type? -395 126 1 922 128 7 0 chr1 21471405 21471546 -221192807 + AluJb SINE Alu 163 304 -8 419 318 110 69 chr1 21471630 21472092 -221192261 + L3 LINE CR1 1097 1577 0 2038 98 20 14 chr1 21474561 21474858 -221189495 + AluSx SINE Alu 1 299 -13 450 226 89 16 chr1 21475062 21475186 -221189167 - MIR SINE MIR -44 218 86 480 250 64 21 chr1 21476610 21476750 -221187603 + MIR SINE MIR 5 150 -112 1127 162 0 0 chr1 21476828 21477007 -221187346 - AluSg/x SINE Alu 0 312 134 2231 114 0 3 chr1 21477007 21477315 -221187038 - AluSx SINE Alu -5 307 1 297 197 15 0 chr1 21477664 21477738 -221186615 - MIR SINE MIR -59 149 97 426 292 0 15 chr1 21478519 21478649 -221185704 + MLT1K LTR MaLR 122 249 -339 3508 107 4 13 chr1 21478683 21479217 -221185136 + MER1A DNA MER1_type 1 529 0 357 227 133 94 chr1 21479258 21479340 -221185013 + MLT1K LTR MaLR 338 415 -173 2261 93 0 7 chr1 21479340 21479640 -221184713 + AluSp SINE Alu 1 298 -15 2452 64 0 0 chr1 21479643 21479939 -221184414 + AluY SINE Alu 1 296 -15 357 227 133 94 chr1 21479939 21480055 -221184298 + MLT1K LTR MaLR 416 548 -40 1182 213 43 0 chr1 21480317 21480528 -221183825 + MER58A DNA MER1_type 4 223 -1 2271 67 3 0 chr1 21480870 21481203 -221183150 + AluY SINE Alu 1 334 0 2323 82 20 0 chr1 21481209 21481512 -221182841 + AluSc SINE Alu 1 309 0 361 279 116 8 chr1 21482577 21482706 -221181647 - MIR3 SINE MIR -21 187 45 256 205 189 47 chr1 21482716 21482843 -221181510 + MIR SINE MIR 43 187 -75 586 221 124 65 chr1 21482864 21482935 -221181418 - MIR SINE MIR -1 261 196 1973 142 0 28 chr1 21482935 21483253 -221181100 - AluJb SINE Alu -3 309 1 586 221 124 65 chr1 21483253 21483398 -221180955 - MIR SINE MIR -66 196 32 252 77 0 0 chr1 21483953 21483992 -221180361 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 1866 113 46 7 chr1 21484561 21484874 -221179479 + AluSx SINE Alu 1 312 0 243 0 0 0 chr1 21484996 21485023 -221179330 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 685 186 8 8 chr1 21485027 21485145 -221179208 - FLAM_C SINE Alu -25 118 1 2006 115 17 3 chr1 21485152 21485447 -221178906 - AluSx SINE Alu -13 299 1 1801 180 0 0 chr1 21485541 21485846 -221178507 - AluJo SINE Alu -6 306 2 1499 151 11 22 chr1 21485907 21486178 -221178175 - AluJb SINE Alu -39 273 6 2976 191 12 40 chr1 21486179 21486486 -221177867 - L1M4 LINE L1 -1002 5144 4830 2292 94 0 3 chr1 21486486 21486783 -221177570 + AluSx SINE Alu 1 296 -16 2353 74 0 3 chr1 21486784 21487082 -221177271 + AluY SINE Alu 1 297 -14 2976 191 12 40 chr1 21487082 21487506 -221176847 - L1M4 LINE L1 -1315 4831 4431 1088 127 73 0 chr1 21487510 21487675 -221176678 + AluSg/x SINE Alu 133 309 -1 1675 250 56 67 chr1 21487767 21488168 -221176185 + L1MC4a LINE L1 4997 5401 -745 2152 115 3 3 chr1 21488168 21488492 -221175861 + AluSx SINE Alu 2 312 0 1675 250 56 67 chr1 21488492 21488547 -221175806 + L1MC4a LINE L1 5401 5455 -691 2135 134 0 0 chr1 21488547 21488846 -221175507 + AluJb SINE Alu 1 299 -13 1675 250 56 67 chr1 21488846 21489190 -221175163 + L1MC4a LINE L1 5455 5111 -1035 2167 107 0 7 chr1 21489190 21489489 -221174864 + AluSx SINE Alu 1 297 -15 1675 250 56 67 chr1 21489489 21489599 -221174754 + L1MC4a LINE L1 5110 5220 -926 2266 132 30 28 chr1 21489626 21489989 -221174364 - THE1B LTR MaLR 0 364 1 30 0 0 0 chr1 21490025 21490055 -221174298 + AT_rich Low_complexity Low_complexity 1 30 0 1328 147 34 0 chr1 21490648 21490852 -221173501 + AluJb SINE Alu 1 211 -101 1658 104 0 36 chr1 21490876 21491125 -221173228 + AluJo SINE Alu 70 309 -3 1519 243 22 19 chr1 21491180 21491596 -221172757 + MLT1E2 LTR MaLR 207 623 -3 824 215 0 0 chr1 21491618 21491767 -221172586 - AluSg/x SINE Alu -27 285 137 326 343 73 76 chr1 21491928 21492049 -221172304 + L1MEc LINE L1 800 920 -5476 983 193 25 0 chr1 21492049 21492210 -221172143 + FRAM SINE Alu 1 165 -1 326 343 73 76 chr1 21492210 21492460 -221171893 + L1MEc LINE L1 920 1172 -5224 2381 73 0 19 chr1 21492460 21492775 -221171578 + AluY SINE Alu 1 309 -2 326 343 73 76 chr1 21492775 21492798 -221171555 + L1MEc LINE L1 1172 1194 -5202 2063 95 3 11 chr1 21492800 21493110 -221171243 - AluSx SINE Alu 0 308 1 237 264 0 110 chr1 21493504 21493595 -221170758 + L1ME3A LINE L1 6052 6132 -38 332 219 32 0 chr1 21493710 21493833 -221170520 + (CA)n Simple_repeat Simple_repeat 2 128 0 304 339 18 9 chr1 21493833 21493942 -221170411 + L2 LINE L2 3189 3298 -15 1076 155 80 5 chr1 21493943 21494143 -221170210 + AluJb SINE Alu 85 299 -13 247 314 0 0 chr1 21494603 21494673 -221169680 - MIR3 SINE MIR -54 154 85 2308 109 0 0 chr1 21494991 21495295 -221169058 + AluSx SINE Alu 1 304 -8 472 275 41 56 chr1 21495567 21495809 -221168544 - MIR SINE MIR -3 259 24 235 272 136 0 chr1 21495970 21496073 -221168280 - MIR SINE MIR -115 147 31 254 283 244 10 chr1 21496850 21497191 -221167162 + L2 LINE L2 2637 3066 -247 216 267 0 0 chr1 21497543 21497588 -221166765 - MIR SINE MIR -110 152 108 245 118 294 15 chr1 21498008 21498076 -221166277 - MIR SINE MIR -62 146 60 287 65 22 0 chr1 21498091 21498137 -221166216 + (CA)n Simple_repeat Simple_repeat 2 48 0 2199 100 0 17 chr1 21498179 21498479 -221165874 - AluSx SINE Alu -17 295 1 2405 70 0 10 chr1 21499653 21499967 -221164386 - AluY SINE Alu 0 311 1 197 37 0 0 chr1 21500090 21500117 -221164236 + L2 LINE L2 3028 3054 -218 287 325 102 30 chr1 21500662 21500828 -221163525 + MIR SINE MIR 70 247 -15 2051 140 0 28 chr1 21500987 21501308 -221163045 + AluSx SINE Alu 1 312 0 1001 205 11 0 chr1 21501512 21501697 -221162656 + MIR SINE MIR 2 188 -74 370 354 127 13 chr1 21502020 21502137 -221162216 - L1ME4a LINE L1 -28 6093 5991 1685 145 3 85 chr1 21502137 21502309 -221162044 - AluJo SINE Alu -8 304 120 2449 54 0 3 chr1 21502309 21502605 -221161748 - AluY SINE Alu -16 295 1 1685 145 3 85 chr1 21502605 21502637 -221161716 - AluJo SINE Alu -192 120 87 2002 122 30 0 chr1 21502637 21502940 -221161413 + AluSx SINE Alu 1 312 0 1685 145 3 85 chr1 21502940 21503065 -221161288 - AluJo SINE Alu -225 87 1 2091 99 0 48 chr1 21503074 21503387 -221160966 - AluSq SINE Alu -15 298 1 370 354 127 13 chr1 21503387 21503496 -221160857 - L1ME4a LINE L1 -137 5984 5830 314 333 45 40 chr1 21503852 21503960 -221160393 + L2 LINE L2 3001 3112 -201 1283 155 182 35 chr1 21503960 21504218 -221160135 - AluSg SINE Alu -3 297 2 314 333 45 40 chr1 21504218 21504310 -221160043 + L2 LINE L2 3112 3202 -111 2280 103 0 0 chr1 21504389 21504690 -221159663 - AluSg SINE Alu -9 301 1 1733 137 3 68 chr1 21504863 21505184 -221159169 - AluJo SINE Alu -12 300 1 1565 104 0 5 chr1 21505722 21505933 -221158420 - AluSg/x SINE Alu -18 294 85 263 346 78 0 chr1 21506434 21506587 -221157766 + L2 LINE L2 975 1139 -2175 510 248 0 0 chr1 21506610 21506767 -221157586 + (CA)n Simple_repeat Simple_repeat 2 158 0 2274 99 0 3 chr1 21506795 21507107 -221157246 - AluSx SINE Alu -1 311 1 510 258 12 18 chr1 21507333 21507496 -221156857 + L2 LINE L2 1580 1741 -1573 193 254 63 0 chr1 21507484 21507547 -221156806 + L2 LINE L2 3206 3272 0 * 408 219 49 71 chr1 21507613 21507813 -221156540 - MIR SINE MIR -13 195 27 1767 153 14 4 chr1 21508944 21509256 -221155097 + AluJo SINE Alu 1 315 0 399 269 48 0 chr1 21509773 21509877 -221154476 + MIR SINE MIR 24 132 -76 320 276 149 15 chr1 21510257 21510391 -221153962 - L2 LINE L2 -2 3311 3160 1184 306 90 36 chr1 21510458 21510564 -221153789 - L2 LINE L2 -140 3173 3074 1908 165 3 0 chr1 21510564 21510867 -221153486 - AluJo SINE Alu -8 304 1 1184 306 90 36 chr1 21510867 21510893 -221153460 - L2 LINE L2 -239 3074 3051 1994 114 0 29 chr1 21510893 21511201 -221153152 + AluSx SINE Alu 1 299 -13 1184 306 90 36 chr1 21511201 21511681 -221152672 - L2 LINE L2 -262 3051 2519 2000 102 7 7 chr1 21511681 21511989 -221152364 - AluSx SINE Alu 0 308 1 1184 306 90 36 chr1 21511989 21512208 -221152145 - L2 LINE L2 -794 2519 2313 1275 268 44 19 chr1 21512245 21512722 -221151631 + MER74B LTR ERVL 66 554 -68 2216 96 7 0 chr1 21512770 21513072 -221151281 + AluY SINE Alu 1 304 -7 698 343 108 10 chr1 21513080 21513578 -221150775 - L2 LINE L2 -1058 2256 1710 388 315 7 60 chr1 21513692 21513841 -221150512 - MIR SINE MIR -33 229 89 392 315 34 99 chr1 21514326 21514618 -221149735 + L2 LINE L2 3000 3272 0 517 217 6 22 chr1 21514644 21514962 -221149391 + (TGGA)n Simple_repeat Simple_repeat 1 312 0 811 159 0 11 chr1 21515001 21515183 -221149170 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 203 294 0 0 chr1 21515183 21515234 -221149119 + (TGGG)n Simple_repeat Simple_repeat 2 52 0 183 288 0 0 chr1 21515243 21515309 -221149044 + (TGGA)n Simple_repeat Simple_repeat 1 66 0 1033 75 0 0 chr1 21515430 21515564 -221148789 + AluY SINE Alu 163 296 -15 665 284 23 28 chr1 21516563 21516781 -221147572 - MIR SINE MIR -13 249 33 219 347 53 33 chr1 21516926 21517076 -221147277 + MIR SINE MIR 21 145 -63 1641 170 182 30 chr1 21517076 21517511 -221146842 + LTR64 LTR ERVK 1 501 -57 2060 123 10 10 chr1 21517512 21517822 -221146531 - AluJo SINE Alu 0 312 3 2204 96 0 0 chr1 21517927 21518228 -221146125 + AluSx SINE Alu 1 301 0 1837 175 19 10 chr1 21518228 21518537 -221145816 + AluJb SINE Alu 1 312 0 992 158 0 34 chr1 21518545 21518722 -221145631 + AluJo SINE Alu 118 288 -24 420 351 16 5 chr1 21518733 21518921 -221145432 + L1ME LINE L1 5548 5737 -384 1800 144 44 3 chr1 21519111 21519400 -221144953 + AluJo SINE Alu 1 304 -8 474 18 0 0 chr1 21519400 21519455 -221144898 + (TG)n Simple_repeat Simple_repeat 2 56 0 305 302 43 50 chr1 21519480 21519619 -221144734 + L1MC5 LINE L1 7575 7712 -249 783 171 0 16 chr1 21519956 21520085 -221144268 - AluJb SINE Alu -58 254 128 681 242 35 32 chr1 21520215 21520448 -221143905 + MIR SINE MIR 20 256 -6 606 214 184 30 chr1 21520561 21520727 -221143626 + MIR SINE MIR 25 229 -33 1881 150 41 0 chr1 21520727 21521021 -221143332 + AluJb SINE Alu 1 306 -6 606 214 184 30 chr1 21521021 21521055 -221143298 + MIR SINE MIR 229 256 -6 463 302 82 0 chr1 21521632 21521814 -221142539 + MIR SINE MIR 65 261 -1 401 274 131 24 chr1 21522669 21522837 -221141516 + MIR SINE MIR 60 245 -17 482 260 58 35 chr1 21523400 21523573 -221140780 + MIR SINE MIR 16 192 -70 499 186 35 35 chr1 21524032 21524145 -221140208 + FLAM_A SINE Alu 1 113 -29 313 290 77 69 chr1 21524156 21524628 -221139725 - L1MCa LINE L1 -30 8211 7744 2178 124 0 0 chr1 21524628 21524911 -221139442 - AluSx SINE Alu -26 286 4 313 290 77 69 chr1 21524911 21524932 -221139421 - L1MCa LINE L1 -497 7744 1875 231 58 19 39 chr1 21525473 21525525 -221138828 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 2208 97 0 35 chr1 21525525 21525664 -221138689 + AluSx SINE Alu 5 147 -165 2512 71 0 0 chr1 21525664 21525959 -221138394 + AluY SINE Alu 1 295 -16 2208 97 0 35 chr1 21525959 21526138 -221138215 + AluSx SINE Alu 147 312 0 2292 119 0 0 chr1 21526139 21526434 -221137919 + AluSx SINE Alu 7 301 -11 282 339 65 0 chr1 21526692 21526816 -221137537 + MIR SINE MIR 117 248 -14 2242 98 20 3 chr1 21527583 21527880 -221136473 + AluSx SINE Alu 1 302 -10 196 282 28 0 chr1 21528203 21528274 -221136079 - L2 LINE L2 -279 2993 2921 372 183 14 0 chr1 21528407 21528478 -221135875 - L2 LINE L2 -43 3229 3158 1698 58 53 0 chr1 21528676 21528883 -221135470 + AluSq SINE Alu 1 218 -95 224 233 0 27 chr1 21529398 21529471 -221134882 + G-rich Low_complexity Low_complexity 3 73 0 2029 96 100 4 chr1 21530126 21530406 -221133947 + AluSq SINE Alu 1 307 -6 199 333 0 0 chr1 21530520 21530571 -221133782 - L2 LINE L2 -23 3290 3240 1205 151 196 8 chr1 21530682 21530927 -221133426 - AluJo SINE Alu -11 291 1 196 162 68 68 chr1 21533903 21533977 -221130376 + MIR3 SINE MIR 81 154 -54 942 186 0 23 chr1 21534649 21534821 -221129532 + FRAM SINE Alu 1 165 -11 398 312 0 0 chr1 21534985 21535126 -221129227 - MIR SINE MIR -37 225 85 215 329 53 0 chr1 21536444 21536520 -221127833 - L2 LINE L2 -1 3271 3192 500 238 16 25 chr1 21536586 21536708 -221127645 + MIR SINE MIR 13 133 -129 267 270 90 0 chr1 21537195 21537295 -221127058 - L2 LINE L2 -244 3028 2920 262 289 58 13 chr1 21537907 21538063 -221126290 + MIR SINE MIR 24 186 -76 225 236 19 57 chr1 21539326 21539432 -221124921 + MIR SINE MIR 32 133 -129 273 293 134 65 chr1 21539770 21540060 -221124293 - L2 LINE L2 -3 3310 3001 295 223 189 9 chr1 21540965 21541071 -221123282 + MIR SINE MIR 27 150 -68 205 360 0 24 chr1 21541780 21541905 -221122448 + G-rich Low_complexity Low_complexity 3 124 0 351 191 38 92 chr1 21542594 21542725 -221121628 - MIR3 SINE MIR -78 130 7 278 242 56 10 chr1 21542944 21543075 -221121278 + MIR SINE MIR 33 172 -62 280 247 27 33 chr1 21543586 21543736 -221120617 + C-rich Low_complexity Low_complexity 2 150 0 334 338 82 34 chr1 21544762 21544969 -221119384 + MIR SINE MIR 46 262 0 229 188 0 21 chr1 21545021 21545069 -221119284 - Alu SINE Alu -13 289 243 324 118 0 4 chr1 21545079 21545132 -221119221 - Alu SINE Alu -17 285 243 263 114 0 23 chr1 21545132 21545176 -221119177 - Alu SINE Alu -17 285 243 1145 145 24 58 chr1 21545186 21545393 -221118960 - AluJb SINE Alu -27 285 86 208 234 16 47 chr1 21545887 21545951 -221118402 - L2 LINE L2 -39 3274 3213 2460 87 3 0 chr1 21545967 21546266 -221118087 + AluSq SINE Alu 1 300 -13 2334 44 4 7 chr1 21546436 21546711 -221117642 + AluY SINE Alu 1 274 -37 1773 138 63 0 chr1 21546711 21546979 -221117374 - AluSx SINE Alu -26 286 1 2601 62 3 0 chr1 21547852 21548156 -221116197 + AluSp SINE Alu 1 305 -8 1399 194 74 7 chr1 21548163 21548446 -221115907 + AluJo SINE Alu 3 304 -8 1743 148 44 75 chr1 21548467 21548852 -221115501 + MLT1B LTR MaLR 18 390 0 679 158 25 8 chr1 21548873 21548993 -221115360 + FLAM_A SINE Alu 1 122 -11 369 176 157 10 chr1 21549098 21549200 -221115153 - MIR3 SINE MIR -15 193 77 372 215 13 0 chr1 21550549 21550628 -221113725 - MIR SINE MIR -120 142 63 2126 135 3 0 chr1 21551459 21551756 -221112597 + AluSx SINE Alu 1 298 -14 1496 207 23 10 chr1 21552156 21552456 -221111897 + AluJo SINE Alu 1 304 -8 233 326 61 20 chr1 21553665 21553763 -221110590 - L3 LINE CR1 -9 1568 1467 23 0 0 0 chr1 21554956 21554979 -221109374 + AT_rich Low_complexity Low_complexity 1 23 0 2101 129 10 3 chr1 21554999 21555308 -221109045 + AluY SINE Alu 1 311 0 2165 97 17 7 chr1 21555403 21555720 -221108633 + AluSx SINE Alu 1 312 0 293 272 0 12 chr1 21557521 21557602 -221106751 - L2 LINE L2 -2 3311 3232 369 0 0 0 chr1 21557804 21557845 -221106508 + (TG)n Simple_repeat Simple_repeat 2 42 0 701 189 0 0 chr1 21557853 21557975 -221106378 - FLAM_A SINE Alu -11 122 1 196 260 13 52 chr1 21558171 21558248 -221106105 + L2 LINE L2 3240 3313 0 1840 159 11 3 chr1 21558366 21558649 -221105704 + AluJb SINE Alu 16 300 -12 912 239 61 22 chr1 21558828 21559058 -221105295 - MER8 DNA MER2_type 0 239 1 183 80 0 0 chr1 21559466 21559491 -221104862 + (CATA)n Simple_repeat Simple_repeat 3 27 0 811 168 0 0 chr1 21559514 21559633 -221104720 - FLAM_C SINE Alu -23 120 2 272 290 20 20 chr1 21559637 21559737 -221104616 - MIR3 SINE MIR -20 188 89 2134 84 0 58 chr1 21560082 21560393 -221103960 + AluY SINE Alu 1 293 -18 2181 131 0 10 chr1 21560963 21561276 -221103077 - AluSg SINE Alu 0 310 1 1718 143 37 24 chr1 21561831 21561940 -221102413 + AluSx SINE Alu 15 121 -191 513 0 0 0 chr1 21561940 21561997 -221102356 + (CA)n Simple_repeat Simple_repeat 2 58 0 1718 143 37 24 chr1 21561997 21562181 -221102172 + AluSx SINE Alu 121 312 0 2158 153 32 43 chr1 21562233 21562425 -221101928 + Tigger2a DNA MER2_type 2 195 -2513 2178 133 3 0 chr1 21562425 21562734 -221101619 - AluSx SINE Alu -2 310 1 2158 153 32 43 chr1 21562734 21562979 -221101374 + Tigger2a DNA MER2_type 195 434 0 1537 211 10 10 chr1 21563064 21563372 -221100981 + AluJo SINE Alu 5 312 0 3748 209 40 26 chr1 21563494 21563596 -221100757 + Charlie1a DNA MER1_type 2 101 -2660 2177 92 34 7 chr1 21563596 21563889 -221100464 + AluSx SINE Alu 2 302 -10 3748 209 40 26 chr1 21563889 21563901 -221100452 + Charlie1a DNA MER1_type 101 111 -2650 2161 124 16 0 chr1 21563901 21564207 -221100146 - AluSx SINE Alu -1 311 1 3748 209 40 26 chr1 21564207 21564565 -221099788 + Charlie1a DNA MER1_type 111 463 -2298 2303 88 0 7 chr1 21564565 21564859 -221099494 - AluSg SINE Alu -18 292 1 3748 209 40 26 chr1 21564859 21565340 -221099013 + Charlie1a DNA MER1_type 463 970 -485 4673 200 114 23 chr1 21565340 21566903 -221097450 + L1MB7 LINE L1 3841 5643 -541 1901 165 0 23 chr1 21566903 21567206 -221097147 + AluJb SINE Alu 1 296 -16 4673 200 114 23 chr1 21567206 21567714 -221096639 + L1MB7 LINE L1 5643 6104 -80 727 206 119 35 chr1 21567714 21568025 -221096328 + Charlie1 DNA MER1_type 2186 2522 -239 839 190 0 0 chr1 21568053 21568195 -221096158 + AluJb SINE Alu 149 290 -22 978 134 13 92 chr1 21568218 21568326 -221096027 + Charlie1 DNA MER1_type 2542 2622 -139 1979 141 30 10 chr1 21568326 21568625 -221095728 - AluSx SINE Alu -5 307 3 978 134 13 92 chr1 21568625 21568754 -221095599 + Charlie1 DNA MER1_type 2622 2760 -1 2412 100 3 0 chr1 21568978 21569288 -221095065 - AluSp SINE Alu -2 311 1 2254 122 0 6 chr1 21569481 21569793 -221094560 + AluSg SINE Alu 1 310 0 254 280 120 30 chr1 21569868 21569968 -221094385 - MIR SINE MIR 0 262 154 2223 106 0 3 chr1 21569970 21570263 -221094090 - AluY SINE Alu -19 292 1 1846 163 3 26 chr1 21570263 21570570 -221093783 - AluJb SINE Alu -12 300 1 355 235 103 15 chr1 21570594 21570730 -221093623 + L1MC5 LINE L1 7526 7673 -288 2267 103 3 10 chr1 21570736 21571037 -221093316 + AluSp SINE Alu 1 299 -14 610 199 34 14 chr1 21571125 21571271 -221093082 + MLT1A1 LTR MaLR 169 317 -48 2475 249 76 62 chr1 21571290 21571498 -221092855 - L2 LINE L2 -252 3061 2857 2383 88 0 16 chr1 21571498 21571803 -221092550 - AluSg SINE Alu -10 300 1 2475 249 76 62 chr1 21571803 21571875 -221092478 - L2 LINE L2 -456 2857 2787 1529 220 3 10 chr1 21571875 21572171 -221092182 + AluJo SINE Alu 3 296 -16 2055 109 25 0 chr1 21572177 21572472 -221091881 + AluSx SINE Alu 1 302 0 2475 249 76 62 chr1 21572472 21572657 -221091696 - L2 LINE L2 -530 2783 2602 2073 127 20 7 chr1 21572657 21572957 -221091396 - AluSx SINE Alu -8 304 1 2475 249 76 62 chr1 21572957 21573681 -221090672 - L2 LINE L2 -711 2602 1787 243 163 0 0 chr1 21574083 21574126 -221090227 + MER4A LTR ERV1 1 43 -621 1891 134 26 19 chr1 21574176 21574528 -221089825 + MER4A LTR ERV1 252 664 0 1357 204 71 34 chr1 21574543 21574867 -221089486 + MSTB LTR MaLR 40 375 -51 226 143 0 36 chr1 21575477 21575533 -221088820 + (TA)n Simple_repeat Simple_repeat 2 55 0 345 82 0 8 chr1 21575534 21575588 -221088765 - Alu SINE Alu -14 287 245 301 79 0 0 chr1 21575572 21575610 -221088743 - Alu SINE Alu -265 38 1 * 1183 114 0 6 chr1 21575969 21576135 -221088218 - AluSq SINE Alu -20 293 129 1066 163 6 0 chr1 21576333 21576505 -221087848 + AluSq SINE Alu 122 294 -19 2196 125 6 0 chr1 21576505 21576816 -221087537 + AluSq SINE Alu 1 313 0 2143 117 20 0 chr1 21577307 21577607 -221086746 + AluSx SINE Alu 1 306 -6 2029 136 3 0 chr1 21577628 21577914 -221086439 + AluSp SINE Alu 1 287 -26 1852 154 0 17 chr1 21578274 21578598 -221085755 + AluSx SINE Alu 1 319 0 1972 117 17 7 chr1 21578655 21578945 -221085408 + AluSx SINE Alu 1 293 -19 226 300 110 50 chr1 21578987 21579087 -221085266 + MIR SINE MIR 18 123 -139 230 209 0 0 chr1 21579100 21579143 -221085210 + L2 LINE L2 3214 3256 -16 225 260 14 41 chr1 21579470 21579543 -221084810 + MIR SINE MIR 80 150 -112 2528 58 0 0 chr1 21579783 21580078 -221084275 + AluY SINE Alu 1 295 -16 1944 143 43 0 chr1 21580176 21580455 -221083898 + AluSx SINE Alu 1 291 -21 1354 143 76 90 chr1 21580711 21580894 -221083459 - AluJo SINE Alu -15 297 118 1891 168 7 0 chr1 21580894 21581203 -221083150 + AluJb SINE Alu 1 311 -1 1354 143 76 90 chr1 21581203 21581320 -221083033 - AluJo SINE Alu -194 118 1 190 296 239 0 chr1 21581571 21581713 -221082640 + MIR3 SINE MIR 33 208 0 1691 166 28 0 chr1 21581949 21582233 -221082120 - AluJo SINE Alu -20 292 1 34 65 0 0 chr1 21584826 21584888 -221079465 + AT_rich Low_complexity Low_complexity 1 62 0 244 308 99 44 chr1 21585543 21585725 -221078628 + MIR SINE MIR 2 193 -69 716 169 0 0 chr1 21585840 21585958 -221078395 + FLAM_C SINE Alu 1 118 -15 261 75 0 0 chr1 21585962 21586002 -221078351 + (CA)n Simple_repeat Simple_repeat 2 41 0 3121 147 48 19 chr1 21586113 21586321 -221078032 + Tigger3b DNA MER2_type 3 204 -2824 2260 89 0 30 chr1 21586321 21586625 -221077728 + AluSc SINE Alu 1 295 -14 3121 147 48 19 chr1 21586625 21586939 -221077414 + Tigger3b DNA MER2_type 204 540 -691 629 261 0 0 chr1 21586939 21587069 -221077284 - FLAM_A SINE Alu -12 130 1 2657 123 43 0 chr1 21587165 21587556 -221076797 + Tigger3b DNA MER2_type 823 1230 -1 33 0 0 0 chr1 21587629 21587662 -221076691 + AT_rich Low_complexity Low_complexity 1 33 0 207 152 0 0 chr1 21588896 21588942 -221075411 + A-rich Low_complexity Low_complexity 1 46 0 2264 104 0 3 chr1 21589068 21589377 -221074976 - AluY SINE Alu -3 308 1 232 256 0 49 chr1 21590308 21590390 -221073963 + MER117 DNA MER1_type 78 155 -42 2250 115 7 0 chr1 21590411 21590715 -221073638 - AluSx SINE Alu -6 306 1 259 247 22 22 chr1 21590808 21590897 -221073456 + A-rich Low_complexity Low_complexity 2 90 0 2356 90 3 0 chr1 21593252 21593551 -221070802 - AluSx SINE Alu -12 300 1 640 227 23 0 chr1 21593786 21593914 -221070439 + AluJo SINE Alu 6 136 -176 1704 167 16 22 chr1 21593927 21594238 -221070115 + AluJb SINE Alu 1 309 -3 2553 75 3 0 chr1 21594246 21594553 -221069800 + AluSg SINE Alu 1 308 -2 887 213 6 0 chr1 21594573 21594760 -221069593 + AluJo SINE Alu 118 305 0 2134 119 10 13 chr1 21594864 21595176 -221069177 + AluSx SINE Alu 1 311 -1 1130 95 0 0 chr1 21595273 21595420 -221068933 + AluSg/x SINE Alu 161 307 -5 1756 169 38 0 chr1 21595605 21595895 -221068458 - AluJb SINE Alu -11 301 1 375 262 10 19 chr1 21595970 21596073 -221068280 + L2 LINE L2 3212 3313 0 2518 56 7 0 chr1 21596095 21596401 -221067952 - AluY SINE Alu -3 308 1 1582 138 89 11 chr1 21596568 21596837 -221067516 - AluJb SINE Alu -22 290 1 21 0 0 0 chr1 21598313 21598334 -221066019 + GC_rich Low_complexity Low_complexity 1 21 0 268 228 31 47 chr1 21598879 21599006 -221065347 + C-rich Low_complexity Low_complexity 2 126 0 25 75 0 0 chr1 21599022 21599075 -221065278 + GC_rich Low_complexity Low_complexity 1 53 0 1561 142 43 25 chr1 21600180 21600461 -221063892 + AluJo SINE Alu 1 286 -26 1336 175 35 45 chr1 21600472 21600613 -221063740 + AluJb SINE Alu 5 146 -166 2180 92 20 7 chr1 21600613 21600907 -221063446 + AluY SINE Alu 1 298 -13 1336 175 35 45 chr1 21600907 21601051 -221063302 + AluJb SINE Alu 146 287 -25 2077 96 58 3 chr1 21601058 21601349 -221063004 + AluSg SINE Alu 1 307 -3 2069 138 3 0 chr1 21601353 21601664 -221062689 + AluSx SINE Alu 1 312 0 2288 105 0 0 chr1 21602026 21602322 -221062031 - AluSx SINE Alu -16 296 1 699 194 16 0 chr1 21602586 21602710 -221061643 - FLAM_A SINE Alu -7 126 1 2131 97 31 3 chr1 21603130 21603420 -221060933 - AluSx SINE Alu -8 304 7 25 0 0 0 chr1 21603628 21603653 -221060700 + AT_rich Low_complexity Low_complexity 1 25 0 1566 164 63 4 chr1 21603653 21603921 -221060432 - AluJo SINE Alu -28 284 1 340 173 0 0 chr1 21604435 21604487 -221059866 + MER46C DNA MER2_type 285 336 -2 1444 129 62 0 chr1 21604491 21604732 -221059621 - Tigger7 DNA MER2_type 0 2487 2232 755 142 8 24 chr1 21604733 21604860 -221059493 + AluJb SINE Alu 2 126 -186 309 153 0 34 chr1 21604861 21604920 -221059433 - Tigger7 DNA MER2_type -281 58 2 354 150 133 133 chr1 21605665 21605723 -221058630 + MER81 DNA DNA 2 62 -52 2199 119 7 0 chr1 21605723 21606026 -221058327 - AluSg SINE Alu -5 305 1 354 150 133 133 chr1 21606026 21606080 -221058273 + MER81 DNA DNA 61 114 0 1261 168 0 0 chr1 21606167 21606370 -221057983 + AluSx SINE Alu 1 203 -109 570 99 0 25 chr1 21606370 21606554 -221057799 + AluSx SINE Alu 69 303 0 1275 98 0 0 chr1 21606554 21606718 -221057635 + AluSx SINE Alu 132 295 -15 2351 75 0 3 chr1 21606949 21607242 -221057111 - AluSc SINE Alu -17 292 1 2332 75 0 0 chr1 21607515 21607822 -221056531 - AluY SINE Alu 0 307 1 2574 60 0 16 chr1 21608171 21608486 -221055867 + AluY SINE Alu 2 311 0 2466 81 0 7 chr1 21608559 21608866 -221055487 + AluSx SINE Alu 1 305 -7 266 253 105 11 chr1 21609003 21609098 -221055255 - MIR SINE MIR -37 225 122 1350 165 139 0 chr1 21609098 21609364 -221054989 + AluJb SINE Alu 1 303 -9 645 211 76 23 chr1 21609832 21610003 -221054350 - MER5A DNA MER1_type 0 189 10 402 131 16 0 chr1 21610206 21610267 -221054086 + AluS SINE Alu 1 62 -246 621 182 25 8 chr1 21660267 21660388 -221003965 - AluJb SINE Alu -188 124 2 185 245 75 0 chr1 21660416 21660469 -221003884 - MIR SINE MIR -136 72 16 351 317 33 0 chr1 21660550 21660670 -221003683 + MIR SINE MIR 117 240 -22 187 333 48 8 chr1 21661204 21661330 -221003023 - L2 LINE L2 -248 3024 2894 1136 204 63 5 chr1 21661969 21662190 -221002163 - AluJo SINE Alu -78 234 1 336 137 0 0 chr1 21662190 21662241 -221002112 - Alu SINE Alu -9 292 242 28 0 0 0 chr1 21662241 21662269 -221002084 + AT_rich Low_complexity Low_complexity 1 28 0 1794 166 26 0 chr1 21662609 21662911 -221001442 - AluJo SINE Alu -2 310 1 6811 20 7 2 chr1 21663494 21664352 -221000001 - L1PA4 LINE L1 -80 6075 5211 2310 90 0 56 chr1 21664891 21665214 -220999139 + AluSx SINE Alu 1 305 -7 1703 168 18 18 chr1 21665505 21665790 -220998563 + AluJo SINE Alu 1 285 -27 1192 131 0 0 chr1 21665935 21666095 -220998258 + AluSg/x SINE Alu 132 291 -21 506 251 42 33 chr1 21666346 21666561 -220997792 + SVA Other Other 649 865 -521 6498 77 23 32 chr1 21666628 21667591 -220996762 + SVA Other Other 433 1386 0 196 0 56 56 chr1 21667595 21667631 -220996722 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 1752 154 45 3 chr1 21668013 21668305 -220996048 - AluJb SINE Alu -8 304 1 1979 150 3 10 chr1 21668688 21668988 -220995365 + AluJb SINE Alu 1 298 -14 678 195 23 0 chr1 21669269 21669397 -220994956 - FLAM_A SINE Alu -2 131 1 31 26 0 0 chr1 21669587 21669625 -220994728 + AT_rich Low_complexity Low_complexity 1 38 0 525 155 0 0 chr1 21669657 21669741 -220994612 - AluJb SINE Alu -20 292 209 495 121 0 147 chr1 21669747 21669882 -220994471 - AluJb SINE Alu 0 312 212 2111 92 7 13 chr1 21669882 21670187 -220994166 + L1PA13 LINE L1 5861 6163 0 495 121 0 147 chr1 21670187 21670200 -220994153 - AluJb SINE Alu -100 212 199 260 113 52 41 chr1 21670200 21670297 -220994056 + GA-rich Low_complexity Low_complexity 1 98 0 6660 122 93 12 chr1 21670303 21671460 -220992893 + MER52C LTR ERV1 28 1278 0 523 295 78 50 chr1 21671566 21671885 -220992468 - L1M4c LINE L1 -6028 356 29 2144 89 4 7 chr1 21672229 21672509 -220991844 - AluSx SINE Alu -33 279 1 2388 69 3 16 chr1 21672581 21672884 -220991469 - AluY SINE Alu -11 300 2 2306 75 0 0 chr1 21673234 21673541 -220990812 + AluY SINE Alu 1 307 0 2271 76 7 3 chr1 21673814 21674105 -220990248 + AluSc SINE Alu 1 292 -17 1261 98 0 0 chr1 21674336 21674500 -220989853 - AluSx SINE Alu -15 297 134 198 0 0 0 chr1 21674500 21674522 -220989831 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 601 122 0 0 chr1 21674522 21674604 -220989749 - AluSx SINE Alu -28 281 200 429 50 0 67 chr1 21674609 21674669 -220989684 - AluSx SINE Alu -174 139 84 1541 142 43 25 chr1 21675621 21675902 -220988451 + AluJo SINE Alu 1 286 -26 1321 175 35 45 chr1 21675913 21676054 -220988299 + AluJb SINE Alu 5 146 -166 2163 92 20 7 chr1 21676054 21676348 -220988005 + AluY SINE Alu 1 298 -13 1321 175 35 45 chr1 21676348 21676492 -220987861 + AluJb SINE Alu 146 287 -25 2046 97 59 3 chr1 21676499 21676789 -220987564 + AluSg SINE Alu 1 306 -4 2052 138 3 0 chr1 21676793 21677104 -220987249 + AluSx SINE Alu 1 312 0 2269 105 0 0 chr1 21677464 21677760 -220986593 - AluSx SINE Alu -16 296 1 750 194 16 0 chr1 21678024 21678148 -220986205 - FLAM_A SINE Alu -7 126 1 2115 97 31 3 chr1 21678568 21678858 -220985495 - AluSx SINE Alu -8 304 7 25 0 0 0 chr1 21679067 21679092 -220985261 + AT_rich Low_complexity Low_complexity 1 25 0 1552 164 63 4 chr1 21679092 21679360 -220984993 - AluJo SINE Alu -28 284 1 343 173 0 0 chr1 21679874 21679926 -220984427 + MER46C DNA MER2_type 285 336 -2 1461 129 62 0 chr1 21679930 21680171 -220984182 - Tigger7 DNA MER2_type 0 2487 2232 805 142 8 24 chr1 21680172 21680299 -220984054 + AluJb SINE Alu 2 126 -186 307 153 0 34 chr1 21680300 21680359 -220983994 - Tigger7 DNA MER2_type -281 58 2 392 150 133 133 chr1 21681104 21681162 -220983191 + MER81 DNA DNA 2 62 -52 2181 119 7 0 chr1 21681162 21681465 -220982888 - AluSg SINE Alu -5 305 1 392 150 133 133 chr1 21681465 21681519 -220982834 + MER81 DNA DNA 61 114 0 439 236 51 32 chr1 21681679 21681836 -220982517 - L1MEd LINE L1 -2787 3342 3183 787 96 0 0 chr1 21681836 21681940 -220982413 - AluSg/x SINE Alu -3 309 206 567 222 189 23 chr1 21681940 21682069 -220982284 - L1MEd LINE L1 -2938 3191 3085 852 163 0 15 chr1 21682069 21682204 -220982149 - FLAM_C SINE Alu 0 133 1 567 222 189 23 chr1 21682204 21682380 -220981973 - L1MEd LINE L1 -3044 3085 2835 434 276 84 41 chr1 21682383 21682798 -220981555 - L1MEd LINE L1 -4756 1554 1080 1565 191 33 3 chr1 21682852 21683155 -220981198 - AluJo SINE Alu 0 312 1 417 310 78 20 chr1 21683239 21683484 -220980869 - L1MEd LINE L1 -5295 824 566 183 129 0 0 chr1 21684719 21684750 -220979603 + (A)n Simple_repeat Simple_repeat 1 31 0 519 208 8 54 chr1 21684809 21684939 -220979414 + FLAM_A SINE Alu 1 124 -9 323 279 51 13 chr1 21685488 21685567 -220978786 - MIR SINE MIR -158 104 23 2193 110 0 0 chr1 21685659 21685941 -220978412 - AluSx SINE Alu -25 287 6 2541 81 0 0 chr1 21685958 21686267 -220978086 - AluSc SINE Alu 0 309 1 2280 113 3 0 chr1 21687509 21687809 -220976544 - AluSc SINE Alu -8 301 1 362 177 9 106 chr1 21687948 21688061 -220976292 + MER103 DNA DNA 24 125 -41 229 382 24 8 chr1 21688983 21689106 -220975247 - L2 LINE L2 -229 3084 2960 31 26 0 0 chr1 21690737 21690775 -220973578 + AT_rich Low_complexity Low_complexity 1 38 0 11555 23 4 1 chr1 21691085 21693131 -220971222 - L1PA2 LINE L1 0 6155 4106 2490 24 0 0 chr1 21693131 21693419 -220970934 + L1PA2 LINE L1 3842 4129 -2017 21 0 0 0 chr1 21693419 21693440 -220970913 + AT_rich Low_complexity Low_complexity 1 21 0 5631 204 81 18 chr1 21693513 21693644 -220970709 + L1M1 LINE L1 3503 3624 -3941 1425 189 57 17 chr1 21693644 21693941 -220970412 + AluJb SINE Alu 1 309 -3 5631 204 81 18 chr1 21693941 21695135 -220969218 + L1M1 LINE L1 3624 4951 -2614 1778 185 10 0 chr1 21695135 21695432 -220968921 + AluJb SINE Alu 1 300 -12 5631 204 81 18 chr1 21695432 21695559 -220968794 + L1M1 LINE L1 4951 5069 -2496 1035 175 0 6 chr1 21695560 21695726 -220968627 - AluJb SINE Alu -113 199 35 1596 195 3 13 chr1 21695726 21696024 -220968329 - AluJo SINE Alu -17 295 1 2299 86 14 0 chr1 21696690 21696981 -220967372 - AluSc SINE Alu -14 295 1 1858 172 14 0 chr1 21698163 21698454 -220965899 - AluJb SINE Alu -17 295 1 2103 101 7 3 chr1 21698465 21698753 -220965600 - AluSg SINE Alu -21 289 1 1086 90 0 0 chr1 21698753 21698886 -220965467 - AluSg SINE Alu -176 134 2 1725 127 80 4 chr1 21698990 21699265 -220965088 - AluSx SINE Alu -16 296 1 280 246 18 0 chr1 21700718 21700775 -220963578 + U7 snRNA snRNA 2 59 -4 28 0 0 0 chr1 21700777 21700805 -220963548 + AT_rich Low_complexity Low_complexity 1 28 0 387 280 47 51 chr1 21701609 21701845 -220962508 - L1MC4a LINE L1 -125 7683 7449 2151 125 7 0 chr1 21701846 21702142 -220962211 - AluSp SINE Alu -15 298 1 366 226 43 0 chr1 21702223 21702316 -220962037 - HAL1 LINE L1 -2309 198 102 1702 164 34 20 chr1 21702321 21702614 -220961739 - AluJo SINE Alu -15 297 1 1990 125 0 3 chr1 21702709 21703019 -220961334 + AluSx SINE Alu 1 309 0 7111 157 32 34 chr1 21703121 21704035 -220960318 - L1PA12 LINE L1 0 6168 5254 2232 81 36 23 chr1 21704035 21704344 -220960009 + AluSq SINE Alu 1 313 0 7111 157 32 34 chr1 21704344 21704856 -220959497 - L1PA12 LINE L1 -914 5254 4743 2364 67 0 0 chr1 21704856 21705178 -220959175 + AluY SINE Alu 1 322 0 7111 157 32 34 chr1 21705178 21705856 -220958497 - L1PA12 LINE L1 -1425 4743 4051 308 259 171 85 chr1 21705897 21706202 -220958151 + L2 LINE L2 2965 3295 -18 471 230 230 29 chr1 21706203 21706412 -220957941 + MIR SINE MIR 6 256 -6 779 318 5 5 chr1 21706540 21706760 -220957593 + MIR SINE MIR 31 250 -12 2071 126 13 3 chr1 21707440 21707741 -220956612 - AluJb SINE Alu -8 304 1 263 298 119 0 chr1 21707958 21708042 -220956311 + L2 LINE L2 3113 3206 -66 227 287 139 28 chr1 21708103 21708211 -220956142 + MIR SINE MIR 65 184 -78 2385 103 3 0 chr1 21708241 21708551 -220955802 + AluSx SINE Alu 1 311 -1 23 54 0 0 chr1 21709024 21709061 -220955292 + AT_rich Low_complexity Low_complexity 1 37 0 535 248 45 19 chr1 21710077 21710234 -220954119 - MIR SINE MIR -1 261 101 1560 135 0 0 chr1 21711215 21711445 -220952908 + AluSq SINE Alu 1 230 -83 2328 75 0 3 chr1 21711621 21711914 -220952439 - AluSc SINE Alu -17 292 1 2305 75 0 0 chr1 21712187 21712494 -220951859 - AluY SINE Alu 0 307 1 2432 69 0 16 chr1 21712844 21713148 -220951205 + AluY SINE Alu 2 300 -11 2525 76 0 6 chr1 21713220 21713534 -220950819 + AluSx SINE Alu 1 312 0 292 253 105 11 chr1 21713676 21713771 -220950582 - MIR SINE MIR -37 225 122 1334 165 139 0 chr1 21713771 21714037 -220950316 + AluJb SINE Alu 1 303 -9 706 211 76 23 chr1 21714505 21714676 -220949677 - MER5A DNA MER1_type 0 189 10 2288 116 7 0 chr1 21714879 21715189 -220949164 + AluSx SINE Alu 1 312 0 704 247 29 29 chr1 21715630 21715682 -220948671 - MER5B DNA MER1_type -7 171 120 180 0 0 0 chr1 21715682 21715702 -220948651 + (GA)n Simple_repeat Simple_repeat 1 20 0 704 247 29 29 chr1 21715702 21715819 -220948534 - MER5B DNA MER1_type -57 121 2 185 338 14 28 chr1 21716182 21716253 -220948100 - MIR3 SINE MIR -130 78 9 617 124 0 41 chr1 21716419 21716516 -220947837 - FRAM SINE Alu -19 157 65 1398 129 14 5 chr1 21716728 21716937 -220947416 - AluSg/x SINE Alu -19 291 81 22 0 0 0 chr1 21717338 21717360 -220946993 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 21717559 21717581 -220946772 + AT_rich Low_complexity Low_complexity 1 22 0 214 191 0 0 chr1 21718148 21718190 -220946163 + A-rich Low_complexity Low_complexity 1 42 0 277 315 81 0 chr1 21718252 21718363 -220945990 - MIR SINE MIR -48 214 95 2216 118 0 0 chr1 21718469 21718766 -220945587 + AluSx SINE Alu 1 297 -15 1839 158 11 0 chr1 21719176 21719490 -220944863 - AluJb SINE Alu 0 317 1 1723 171 0 44 chr1 21719551 21719866 -220944487 - AluJo SINE Alu -11 301 1 473 276 35 14 chr1 21719876 21720021 -220944332 + MLT1J LTR MaLR 69 216 -295 774 185 0 27 chr1 21720029 21720175 -220944178 + FLAM_C SINE Alu 2 143 0 2221 110 10 0 chr1 21720209 21720519 -220943834 - AluSq SINE Alu 0 313 1 2564 174 132 137 chr1 21720619 21721076 -220943277 + L1MC3 LINE L1 6684 7142 -643 244 157 0 180 chr1 21721076 21721165 -220943188 + MLT1F1 LTR MaLR 50 122 -445 2564 174 132 137 chr1 21721165 21721295 -220943058 + L1MC3 LINE L1 7142 7271 -514 1827 141 4 18 chr1 21721295 21721571 -220942782 - AluJo SINE Alu -17 295 24 2564 174 132 137 chr1 21721571 21721985 -220942368 + L1MC3 LINE L1 7271 7769 -16 1047 121 13 0 chr1 21722173 21722330 -220942023 + AluSg/x SINE Alu 146 304 -6 23 0 0 0 chr1 21722416 21722439 -220941914 + AT_rich Low_complexity Low_complexity 1 23 0 252 303 182 10 chr1 21722745 21722844 -220941509 + L2 LINE L2 3193 3308 -5 2143 89 16 23 chr1 21723032 21723336 -220941017 + AluSx SINE Alu 1 302 -10 1143 105 0 0 chr1 21724175 21724328 -220940025 + FRAM SINE Alu 8 160 -16 1321 130 5 0 chr1 21724339 21724539 -220939814 + MER1B DNA MER1_type 1 201 -96 256 310 0 0 chr1 21725389 21725447 -220938906 + (CA)n Simple_repeat Simple_repeat 2 59 0 1095 127 6 0 chr1 21726856 21727014 -220937339 - AluSg/x SINE Alu -5 305 147 334 115 0 19 chr1 21727015 21727067 -220937286 - AluSp/q SINE Alu -96 207 157 1668 88 0 5 chr1 21727067 21727283 -220937070 - AluSq SINE Alu -98 215 1 2393 69 0 0 chr1 21727500 21727790 -220936563 + AluY SINE Alu 1 290 -21 1933 92 4 0 chr1 21728080 21728330 -220936023 - AluSq SINE Alu -19 294 44 233 278 0 0 chr1 21728805 21728816 -220935537 + MER3 DNA MER1_type 37 47 -162 551 263 134 6 chr1 21728816 21728995 -220935358 - MER3 DNA MER1_type 0 209 8 1977 136 3 26 chr1 21729077 21729244 -220935109 - AluSx SINE Alu -17 295 137 2357 100 3 0 chr1 21729244 21729554 -220934799 - AluY SINE Alu 0 311 1 1977 136 3 26 chr1 21729554 21729688 -220934665 - AluSx SINE Alu -175 137 1 2118 129 0 13 chr1 21730045 21730354 -220933999 - AluSx SINE Alu -7 305 1 198 0 0 0 chr1 21730355 21730377 -220933976 + (TTC)n Simple_repeat Simple_repeat 3 24 0 893 118 0 8 chr1 21730395 21730514 -220933839 - FLAM_C SINE Alu -25 118 1 847 103 41 0 chr1 21730770 21730915 -220933438 + L1MA7 LINE L1 6140 6290 -1 625 182 0 25 chr1 21731252 21731373 -220932980 + FLAM_A SINE Alu 11 128 -14 1726 179 3 20 chr1 21732382 21732683 -220931670 + AluJo SINE Alu 1 296 -16 1291 113 113 0 chr1 21732685 21732870 -220931483 + AluSq SINE Alu 1 206 -107 207 167 22 67 chr1 21733196 21733286 -220931067 + (TCTCTG)n Simple_repeat Simple_repeat 6 91 0 967 94 8 0 chr1 21733394 21733551 -220930802 - AluSg/x SINE Alu 0 313 156 882 55 0 0 chr1 21733552 21733662 -220930691 - AluSp SINE Alu -203 110 1 504 134 21 21 chr1 21734257 21734354 -220929999 + FLAM_A SINE Alu 43 139 -3 280 263 38 0 chr1 21735113 21735193 -220929160 - MER5A DNA MER1_type -103 86 4 1632 170 3 39 chr1 21735783 21736105 -220928248 + AluJb SINE Alu 12 323 0 22 35 0 0 chr1 21736138 21736167 -220928186 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 21736751 21736774 -220927579 + AT_rich Low_complexity Low_complexity 1 23 0 2555 59 0 3 chr1 21738240 21738544 -220925809 + AluY SINE Alu 1 303 -8 1488 252 98 42 chr1 21739279 21740047 -220924306 + L2 LINE L2 2420 3240 -73 2320 62 3 7 chr1 21740074 21740363 -220923990 + AluSg1 SINE Alu 1 288 -21 1952 131 25 0 chr1 21740958 21741252 -220923101 - AluSx SINE Alu 0 301 1 181 434 85 0 chr1 21741394 21741523 -220922830 + L2 LINE L2 3122 3261 -11 22 0 0 0 chr1 21741920 21741942 -220922411 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 21742141 21742163 -220922190 + AT_rich Low_complexity Low_complexity 1 22 0 214 191 0 0 chr1 21742730 21742772 -220921581 + A-rich Low_complexity Low_complexity 1 42 0 286 315 81 0 chr1 21742834 21742945 -220921408 - MIR SINE MIR -48 214 95 2215 118 0 0 chr1 21743051 21743348 -220921005 + AluSx SINE Alu 1 297 -15 1849 158 11 0 chr1 21743758 21744072 -220920281 - AluJb SINE Alu 0 317 1 1749 171 0 44 chr1 21744133 21744448 -220919905 - AluJo SINE Alu -11 301 1 417 276 35 14 chr1 21744458 21744603 -220919750 + MLT1J LTR MaLR 69 216 -295 720 184 0 27 chr1 21744610 21744757 -220919596 + FLAM_C SINE Alu 1 143 0 2455 87 3 0 chr1 21744791 21745103 -220919250 - AluSp SINE Alu 0 313 1 347 188 125 31 chr1 21745240 21745336 -220919017 + MLT1J LTR MaLR 403 507 -4 224 301 97 29 chr1 21748425 21748528 -220915825 + MIR SINE MIR 40 149 -59 346 346 69 15 chr1 21748609 21748739 -220915614 + MIR3 SINE MIR 9 145 -63 532 240 171 28 chr1 21748767 21748984 -220915369 + MIR SINE MIR 1 248 -14 1593 206 29 14 chr1 21749586 21749935 -220914418 - MLT1A2 LTR MaLR -3 371 18 690 171 0 89 chr1 21750672 21750818 -220913535 - FLAM_A SINE Alu 0 133 1 2567 66 0 0 chr1 21750852 21751156 -220913197 + AluY SINE Alu 1 304 -7 520 239 15 31 chr1 21751817 21751947 -220912406 - L2 LINE L2 0 3313 3186 217 250 0 0 chr1 21752302 21752350 -220912003 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 700 183 107 41 chr1 21752640 21752837 -220911516 - MER20 DNA MER1_type -2 217 8 1219 149 0 0 chr1 21753261 21753442 -220910911 - AluSg/x SINE Alu 0 312 132 1673 167 18 18 chr1 21753590 21753872 -220910481 - AluJo SINE Alu -30 282 1 2274 90 0 56 chr1 21754163 21754486 -220909867 - AluSx SINE Alu -7 305 1 621 243 148 28 chr1 21754544 21754956 -220909397 - L1ME3A LINE L1 -208 5962 5491 5299 66 32 0 chr1 21755191 21755933 -220908420 - L1PA8A LINE L1 -27 6104 5339 540 246 130 46 chr1 21755987 21756332 -220908021 - L1ME3A LINE L1 -818 5328 4955 1455 210 3 30 chr1 21756424 21756729 -220907624 - AluJo SINE Alu -15 297 1 261 271 0 0 chr1 21756774 21756844 -220907509 + L1ME3A LINE L1 6078 6147 -23 276 300 71 13 chr1 21756845 21756999 -220907354 - MER63 DNA MER1_type 0 1060 677 1490 205 8 0 chr1 21757094 21757348 -220907005 + AluJo SINE Alu 19 274 -38 1836 158 26 29 chr1 21757384 21757694 -220906659 + AluJo SINE Alu 1 309 -3 365 256 16 8 chr1 21757770 21757895 -220906458 + L1MC4a LINE L1 5757 5882 -1926 1460 150 84 25 chr1 21758160 21758434 -220905919 + AluJo SINE Alu 1 290 -22 188 314 0 20 chr1 21758626 21758677 -220905676 + MIR SINE MIR 20 69 -139 342 353 46 14 chr1 21758788 21759008 -220905345 + MIR SINE MIR 37 261 -1 474 286 47 42 chr1 21759082 21759274 -220905079 - MIR SINE MIR -13 249 57 2048 106 0 75 chr1 21759291 21759611 -220904742 - AluSx SINE Alu -16 296 1 21 36 0 0 chr1 21759614 21759642 -220904711 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 21761031 21761055 -220903298 + AT_rich Low_complexity Low_complexity 1 24 0 463 201 24 33 chr1 21761171 21761308 -220903045 + L1ME LINE L1 5512 5649 -472 3334 219 64 43 chr1 21761457 21761915 -220902438 + L1M4 LINE L1 3950 4397 -1749 1993 148 10 3 chr1 21761915 21762218 -220902135 + AluSx SINE Alu 1 305 -7 3334 219 64 43 chr1 21762218 21762948 -220901405 + L1M4 LINE L1 4397 5163 -983 1872 173 0 3 chr1 21762949 21763238 -220901115 + AluJb SINE Alu 1 288 -24 266 0 0 29 chr1 21763249 21763284 -220901069 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1844 157 10 3 chr1 21763325 21763619 -220900734 + AluJb SINE Alu 1 296 -16 351 0 0 0 chr1 21763621 21763660 -220900693 + (CA)n Simple_repeat Simple_repeat 2 40 0 1149 156 141 51 chr1 21763687 21763784 -220900569 + AluJo SINE Alu 15 102 -210 2303 100 0 3 chr1 21763784 21764094 -220900259 + AluSx SINE Alu 3 311 -1 1149 156 141 51 chr1 21764094 21764252 -220900101 + AluJo SINE Alu 102 293 -19 1747 168 28 0 chr1 21764254 21764540 -220899813 + AluJo SINE Alu 3 296 -16 2054 120 3 19 chr1 21764781 21765090 -220899263 + AluSg SINE Alu 1 304 -6 185 272 62 12 chr1 21765808 21765889 -220898464 + MIR SINE MIR 117 201 -61 1856 114 43 85 chr1 21766292 21766644 -220897709 - MER1B DNA MER1_type 0 337 1 362 299 26 8 chr1 21766718 21766835 -220897518 - MIR SINE MIR -16 246 128 21 0 0 0 chr1 21769799 21769820 -220894533 + AT_rich Low_complexity Low_complexity 1 21 0 181 318 200 12 chr1 21769992 21770162 -220894191 + MIR SINE MIR 5 206 -56 2366 77 20 0 chr1 21770934 21771233 -220893120 - AluY SINE Alu -6 305 1 21 0 0 0 chr1 21771234 21771255 -220893098 + AT_rich Low_complexity Low_complexity 1 21 0 2092 134 0 0 chr1 21771410 21771702 -220892651 - AluSx SINE Alu -6 306 15 1837 149 0 43 chr1 21771897 21772199 -220892154 - AluJb SINE Alu -23 289 1 221 232 0 74 chr1 21772836 21772931 -220891422 + A-rich Low_complexity Low_complexity 3 90 0 2254 67 0 58 chr1 21772934 21773247 -220891106 + AluY SINE Alu 1 295 -16 564 143 0 0 chr1 21774293 21774377 -220889976 - AluJb SINE Alu -22 290 207 1329 182 3 84 chr1 21774378 21774675 -220889678 - AluJo SINE Alu -39 273 1 802 102 79 0 chr1 21775964 21776091 -220888262 + MER85 DNA T2_type 1 137 -2 6575 142 42 27 chr1 21776991 21777618 -220886735 + Tigger3b DNA MER2_type 1 656 -2372 1622 166 86 14 chr1 21777618 21777908 -220886445 + AluJo SINE Alu 1 311 -1 6575 142 42 27 chr1 21777908 21778491 -220885862 + Tigger3b DNA MER2_type 656 1229 -2 236 163 81 23 chr1 21779316 21779402 -220884951 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 620 173 0 0 chr1 21779683 21779793 -220884560 + FLAM_C SINE Alu 33 142 -1 23 0 0 0 chr1 21779794 21779817 -220884536 + AT_rich Low_complexity Low_complexity 1 23 0 635 208 106 21 chr1 21779832 21780068 -220884285 + MER112 DNA MER1_type 1 256 0 2376 86 3 0 chr1 21780173 21780474 -220883879 - AluSp SINE Alu -11 302 1 192 200 0 0 chr1 21781957 21781997 -220882356 + A-rich Low_complexity Low_complexity 1 40 0 2388 81 3 0 chr1 21783511 21783806 -220880547 - AluSg SINE Alu -14 296 1 2143 129 0 0 chr1 21784091 21784385 -220879968 - AluSx SINE Alu -18 294 1 1042 221 149 10 chr1 21784481 21784770 -220879583 + MER58B DNA MER1_type 10 338 -3 1614 183 3 10 chr1 21785792 21786092 -220878261 - AluJb SINE Alu -14 298 1 368 307 47 24 chr1 21786723 21786850 -220877503 + MIR3 SINE MIR 53 182 -26 273 29 0 0 chr1 21788256 21788290 -220876063 + (CA)n Simple_repeat Simple_repeat 2 35 0 7642 29 6 4 chr1 21788838 21789782 -220874571 - L1PA4 LINE L1 -3 6152 5213 2311 97 0 7 chr1 21790312 21790612 -220873741 + AluSx SINE Alu 1 298 -14 1857 159 0 3 chr1 21791223 21791519 -220872834 - AluJo SINE Alu -9 303 9 2165 114 7 0 chr1 21791748 21792055 -220872298 + AluSg SINE Alu 1 309 -1 1782 165 23 0 chr1 21792729 21793032 -220871321 + AluJo SINE Alu 1 310 -2 28 0 0 0 chr1 21793372 21793400 -220870953 + AT_rich Low_complexity Low_complexity 1 28 0 348 125 0 0 chr1 21793400 21793448 -220870905 + Alu SINE Alu 243 290 -12 1405 209 50 4 chr1 21793451 21793729 -220870624 + AluJo SINE Alu 1 291 -21 1250 184 48 32 chr1 21794729 21794979 -220869374 + AluJo SINE Alu 35 288 -24 503 249 56 20 chr1 21795180 21795362 -220868991 - L1M4 LINE L1 -2909 3237 3042 2512 55 0 7 chr1 21795362 21795669 -220868684 - AluY SINE Alu -6 305 1 503 249 56 20 chr1 21795669 21795735 -220868618 - L1M4 LINE L1 -3104 3042 2980 2097 185 73 29 chr1 21795737 21796213 -220868140 + MLT1D LTR MaLR 1 497 -8 873 224 190 3 chr1 21796228 21796554 -220867799 - L1M4 LINE L1 -3195 2951 2565 448 228 44 61 chr1 21796708 21796845 -220867508 - MLT1D LTR MaLR -105 400 287 3107 237 75 48 chr1 21796845 21797762 -220866591 + L1ME1 LINE L1 3553 4518 -1628 2185 69 0 4 chr1 21797762 21798038 -220866315 + AluY SINE Alu 37 311 0 3107 237 75 48 chr1 21798038 21798433 -220865920 + L1ME1 LINE L1 4518 4901 -1245 1582 226 82 53 chr1 21798431 21798775 -220865578 + L1ME1 LINE L1 5516 5881 -285 * 1708 150 10 43 chr1 21798775 21799075 -220865278 + AluJb SINE Alu 1 290 -22 1582 226 82 53 chr1 21799075 21799240 -220865113 + L1ME1 LINE L1 5881 6040 -126 1686 180 7 0 chr1 21799779 21800068 -220864285 - AluJo SINE Alu -21 291 1 793 157 8 15 chr1 21800270 21800404 -220863949 - FLAM_A SINE Alu 0 133 1 369 295 9 37 chr1 21800497 21800685 -220863668 - L1MC/D LINE L1 -736 5434 5293 1661 199 14 0 chr1 21800768 21801065 -220863288 - AluJb SINE Alu -11 301 1 2330 85 10 0 chr1 21801471 21801764 -220862589 - AluSp SINE Alu -15 298 3 27 73 0 0 chr1 21802557 21802612 -220861741 + AT_rich Low_complexity Low_complexity 1 55 0 322 247 88 65 chr1 21802775 21802945 -220861408 + L1M4 LINE L1 4649 4822 -1324 2175 92 28 0 chr1 21803872 21804156 -220860197 - AluSp SINE Alu -20 293 2 274 325 13 0 chr1 21804362 21804439 -220859914 + L2 LINE L2 3158 3235 -37 393 279 79 13 chr1 21804525 21804674 -220859679 - MIR SINE MIR -63 145 3 228 35 0 0 chr1 21805370 21805399 -220858954 + (TA)n Simple_repeat Simple_repeat 2 30 0 232 367 47 8 chr1 21805400 21805528 -220858825 + L2 LINE L2 3180 3312 -1 2013 117 13 17 chr1 21806119 21806418 -220857935 - AluSx SINE Alu -10 302 5 200 129 0 0 chr1 21806963 21806994 -220857359 + L2 LINE L2 3281 3311 -2 1548 192 11 0 chr1 21807115 21807391 -220856962 - AluJo SINE Alu -33 279 1 585 302 233 0 chr1 21807742 21807944 -220856409 + MIR SINE MIR 14 262 0 1744 171 44 0 chr1 21807957 21808255 -220856098 + AluJo SINE Alu 1 311 -1 1155 116 18 0 chr1 21808606 21808770 -220855583 - AluSq SINE Alu -13 300 134 1311 154 13 13 chr1 21809418 21809645 -220854708 - AluJo SINE Alu -11 301 75 2104 90 17 7 chr1 21809968 21810258 -220854095 - AluSc SINE Alu -16 293 1 2180 172 37 11 chr1 21810284 21810721 -220853632 - L1MB7 LINE L1 -16 6168 5721 698 238 66 6 chr1 21811170 21811371 -220852982 - MIR SINE MIR 0 262 48 4251 101 35 159 chr1 21811472 21812130 -220852223 - Tigger1 DNA MER2_type 0 2418 1771 821 172 8 0 chr1 21812130 21812258 -220852095 - FLAM_A SINE Alu -13 129 1 4251 101 35 159 chr1 21812258 21812425 -220851928 - Tigger1 DNA MER2_type -647 1771 1585 512 206 7 96 chr1 21812425 21812561 -220851792 - FLAM_A SINE Alu -15 127 4 241 91 0 0 chr1 21812561 21812594 -220851759 - Tigger1 DNA MER2_type -830 1588 1556 188 290 0 32 chr1 21812594 21812656 -220851697 - L2 LINE L2 -619 2695 2636 8207 128 78 35 chr1 21812743 21813205 -220851148 - Tigger1 DNA MER2_type -866 1552 1111 2301 105 0 0 chr1 21813205 21813501 -220850852 + AluSc SINE Alu 1 296 -13 8207 128 78 35 chr1 21813501 21814526 -220849827 - Tigger1 DNA MER2_type -1307 1111 1 271 333 95 66 chr1 21814737 21814935 -220849418 - L2 LINE L2 -583 2731 2540 2148 104 0 4 chr1 21814935 21815215 -220849138 + AluSg SINE Alu 1 279 -31 271 333 95 66 chr1 21815215 21815502 -220848851 - L2 LINE L2 -774 2540 2232 361 192 0 90 chr1 21815503 21815581 -220848772 - AluJ/FLAM SINE Alu -245 57 2 308 242 11 33 chr1 21815584 21815675 -220848678 + L1ME1 LINE L1 6064 6152 -14 184 300 0 0 chr1 21816088 21816138 -220848215 - L2 LINE L2 -1898 1416 1367 339 274 296 18 chr1 21816392 21816615 -220847738 + L2 LINE L2 3013 3297 -16 211 338 0 0 chr1 21816769 21816840 -220847513 + MIR SINE MIR 84 154 -108 839 170 0 0 chr1 21817119 21817278 -220847075 - L1MA4A LINE L1 -6 6297 6139 21 0 0 0 chr1 21818159 21818180 -220846173 + AT_rich Low_complexity Low_complexity 1 21 0 601 261 86 116 chr1 21818588 21819208 -220845145 + L1MEd LINE L1 224 824 -5295 2124 119 7 0 chr1 21819559 21819854 -220844499 - AluSx SINE Alu -15 297 1 2414 84 0 7 chr1 21820386 21820695 -220843658 + AluSg SINE Alu 1 307 -3 2110 130 0 3 chr1 21821407 21821715 -220842638 - AluSx SINE Alu -5 307 1 201 234 0 0 chr1 21823266 21823313 -220841040 + GA-rich Low_complexity Low_complexity 2 48 0 24 0 0 0 chr1 21824310 21824334 -220840019 + AT_rich Low_complexity Low_complexity 1 24 0 1086 172 6 0 chr1 21824571 21824745 -220839608 + FRAM SINE Alu 1 169 -7 618 14 0 0 chr1 21825534 21825605 -220838748 + (TG)n Simple_repeat Simple_repeat 2 72 0 1811 190 0 0 chr1 21825792 21826097 -220838256 + AluJo SINE Alu 1 305 -7 247 276 0 0 chr1 21826100 21826158 -220838195 + GA-rich Low_complexity Low_complexity 1 58 0 1189 174 116 27 chr1 21826310 21826596 -220837757 + AluJb SINE Alu 1 309 0 400 258 45 59 chr1 21826773 21827028 -220837325 + L1ME4a LINE L1 5624 5881 -240 1644 165 3 63 chr1 21827028 21827343 -220837010 - AluJb SINE Alu -15 297 2 207 0 0 0 chr1 21827348 21827371 -220836982 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 400 258 45 59 chr1 21827371 21827396 -220836957 + L1ME4a LINE L1 5885 5906 -215 326 264 23 78 chr1 21827611 21827740 -220836613 + MER20B DNA MER1_type 64 185 -598 674 265 23 50 chr1 21828130 21828349 -220836004 - MIR SINE MIR 0 262 50 1777 183 23 0 chr1 21828627 21828928 -220835425 + AluJb SINE Alu 1 308 -4 426 179 32 0 chr1 21829088 21829211 -220835142 + GA-rich Low_complexity Low_complexity 3 129 0 1744 112 0 0 chr1 21830381 21830614 -220833739 + AluSx SINE Alu 3 235 -77 195 42 0 0 chr1 21830623 21830647 -220833706 + (A)n Simple_repeat Simple_repeat 1 24 0 436 285 87 23 chr1 21831052 21831224 -220833129 - MIR SINE MIR -48 214 32 2162 117 3 7 chr1 21833808 21834107 -220830246 - AluSc SINE Alu -11 298 1 2174 102 0 3 chr1 21834220 21834539 -220829814 + AluSq SINE Alu 1 318 0 1185 215 68 31 chr1 21835372 21835697 -220828656 + MER58B DNA MER1_type 1 337 -4 2240 111 3 0 chr1 21835909 21836216 -220828137 + AluSg SINE Alu 1 308 -2 589 318 109 70 chr1 21836381 21836878 -220827475 - L2 LINE L2 -86 3227 2751 1881 181 0 10 chr1 21836878 21837187 -220827166 - AluJb SINE Alu -6 306 1 589 318 109 70 chr1 21837187 21837623 -220826730 - L2 LINE L2 -562 2751 2263 361 36 125 0 chr1 21837831 21837887 -220826466 + THE1C LTR MaLR 1 63 -312 671 308 130 14 chr1 21837954 21838246 -220826107 - L2 LINE L2 -557 2757 2432 180 0 0 0 chr1 21838270 21838290 -220826063 + (A)n Simple_repeat Simple_repeat 1 20 0 813 131 0 25 chr1 21838322 21838444 -220825909 - AluJ SINE Alu -12 300 182 733 125 27 0 chr1 21838444 21838556 -220825797 - AluJ SINE Alu -197 115 1 9664 186 37 16 chr1 21838883 21841308 -220823045 + L1P5 LINE L1 2825 5310 -841 378 0 0 0 chr1 21841308 21841350 -220823003 + (TAA)n Simple_repeat Simple_repeat 2 43 0 9664 186 37 16 chr1 21841350 21841799 -220822554 + L1P5 LINE L1 5310 5748 -403 2234 97 21 0 chr1 21841839 21842129 -220822224 + AluSq SINE Alu 3 298 -15 1595 172 34 24 chr1 21842136 21842433 -220821920 + AluJo SINE Alu 6 305 -7 29 0 0 25 chr1 21842737 21842755 -220821598 + AT_rich Low_complexity Low_complexity 1 18 -21 2308 87 0 0 chr1 21842755 21843041 -220821312 + AluSc SINE Alu 1 286 -23 29 0 0 25 chr1 21843041 21843062 -220821291 + AT_rich Low_complexity Low_complexity 18 39 0 660 204 0 0 chr1 21843130 21843272 -220821081 - L1MA4 LINE L1 -117 6183 6042 1211 135 86 37 chr1 21843803 21844047 -220820306 - Tigger2 DNA MER2_type 0 2718 2463 3408 139 39 88 chr1 21844106 21844572 -220819781 - Tigger2 DNA MER2_type -1964 754 341 840 169 0 0 chr1 21844572 21844702 -220819651 - FLAM_C SINE Alu -1 132 3 3408 139 39 88 chr1 21844702 21845028 -220819325 - Tigger2 DNA MER2_type -2377 341 1 1726 104 119 40 chr1 21845324 21845602 -220818751 + AluSx SINE Alu 1 300 -12 357 320 34 20 chr1 21845830 21845977 -220818376 - MIR3 SINE MIR -20 188 40 3271 157 43 5 chr1 21846271 21846875 -220817478 - MER73 LTR ERVL 0 644 18 343 274 44 0 chr1 21847031 21847144 -220817209 - MER94 DNA DNA -15 119 2 400 326 114 22 chr1 21847421 21847648 -220816705 - MIR SINE MIR -2 260 13 2173 105 7 7 chr1 21848128 21848422 -220815931 - AluSx SINE Alu -14 298 5 290 143 182 39 chr1 21848458 21848535 -220815818 + Charlie8 DNA MER1_type 294 381 -2036 543 185 139 0 chr1 21849618 21849726 -220814627 - FLAM_A SINE Alu -8 125 3 2068 121 0 23 chr1 21849827 21850132 -220814221 - AluSx SINE Alu -14 298 1 1013 216 135 17 chr1 21850300 21850596 -220813757 - MER2 DNA MER2_type -14 331 1 27 0 0 0 chr1 21850936 21850963 -220813390 + AT_rich Low_complexity Low_complexity 1 27 0 1008 133 32 0 chr1 21851618 21851776 -220812577 - AluSg/x SINE Alu -13 297 135 2198 103 3 0 chr1 21851983 21852273 -220812080 + AluY SINE Alu 1 291 -20 287 218 7 129 chr1 21852279 21852332 -220812021 + L1MC4a LINE L1 5780 5838 -1970 2346 83 0 0 chr1 21852332 21852622 -220811731 + AluSq SINE Alu 1 290 -23 287 218 7 129 chr1 21852622 21852715 -220811638 + L1MC4a LINE L1 5838 5908 -1900 1903 139 24 0 chr1 21853289 21853583 -220810770 - AluSx SINE Alu -11 301 1 2051 123 3 7 chr1 21854002 21854302 -220810051 + AluSx SINE Alu 1 299 -13 2626 276 114 24 chr1 21855538 21856549 -220807804 - L2 LINE L2 -731 2583 1482 204 67 0 0 chr1 21857021 21857051 -220807302 + (A)n Simple_repeat Simple_repeat 1 30 0 37 23 0 0 chr1 21857261 21857305 -220807048 + AT_rich Low_complexity Low_complexity 1 44 0 189 345 0 0 chr1 21857375 21857430 -220806923 + MIR SINE MIR 92 146 -62 976 244 0 31 chr1 21857445 21857674 -220806679 + MER58A DNA MER1_type 1 222 -2 1464 44 0 0 chr1 21857826 21858006 -220806347 - L1PA4 LINE L1 0 6155 5976 823 132 22 15 chr1 21858406 21858542 -220805811 + AluSq/x SINE Alu 1 137 -175 2318 95 0 0 chr1 21858842 21859137 -220805216 - AluSx SINE Alu -17 295 1 21 89 0 0 chr1 21859137 21859193 -220805160 + AT_rich Low_complexity Low_complexity 1 56 0 693 190 9 0 chr1 21859364 21859480 -220804873 - FLAM_C SINE Alu -16 117 1 2175 121 0 7 chr1 21859489 21859796 -220804557 - AluSc SINE Alu -4 305 1 2145 127 0 10 chr1 21860139 21860447 -220803906 + AluSg SINE Alu 1 305 -5 413 158 24 24 chr1 21860487 21860569 -220803784 - AluJ/FRAM SINE Alu -11 301 220 212 198 0 70 chr1 21860681 21860767 -220803586 + (CCCCG)n Simple_repeat Simple_repeat 4 83 0 315 188 25 25 chr1 21861171 21861251 -220803102 + AluJ/FRAM SINE Alu 220 299 -3 1662 155 17 14 chr1 21861308 21861598 -220802755 - AluSq SINE Alu -22 291 1 774 130 0 89 chr1 21861604 21861750 -220802603 - FLAM_C SINE Alu 0 133 1 1809 158 0 3 chr1 21861982 21862266 -220802087 + AluSx SINE Alu 26 308 -4 707 203 8 8 chr1 21862275 21862408 -220801945 + AluJo/FLAM SINE Alu 1 133 -179 2595 47 0 0 chr1 21862411 21862712 -220801641 + AluY SINE Alu 1 301 -10 544 112 0 11 chr1 21862818 21862907 -220801446 - L1M3 LINE L1 -751 5583 5496 1689 138 50 0 chr1 21862907 21863167 -220801186 - AluSx SINE Alu -16 296 24 2268 229 30 23 chr1 21863189 21863935 -220800418 - L1M3 LINE L1 -884 5262 4512 359 301 128 19 chr1 21864129 21864285 -220800068 - L2 LINE L2 -349 2965 2793 208 365 46 57 chr1 21864626 21864908 -220799445 + L2 LINE L2 2812 3090 -182 5548 79 51 43 chr1 21864942 21865876 -220798477 - SVA Other Other 0 1386 445 4711 64 29 16 chr1 21866112 21866797 -220797556 - SVA Other Other -688 698 5 2297 119 0 0 chr1 21868181 21868492 -220795861 + AluSx SINE Alu 1 311 -1 1519 198 0 8 chr1 21868753 21869021 -220795332 + AluSx SINE Alu 1 266 -46 1311 181 26 0 chr1 21869667 21869899 -220794454 + Tigger7 DNA MER2_type 30 267 -2220 392 200 53 21 chr1 21869910 21870005 -220794348 + Tigger7 DNA MER2_type 2390 2487 0 521 259 111 0 chr1 21870626 21870788 -220793565 - L2 LINE L2 -40 3273 3094 2306 59 45 0 chr1 21870967 21871257 -220793096 - AluY SINE Alu -8 303 1 733 209 0 8 chr1 21871274 21871408 -220792945 + FLAM_A SINE Alu 1 133 0 259 32 0 0 chr1 21872779 21872810 -220791543 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 1672 196 3 7 chr1 21872810 21873095 -220791258 - AluJo SINE Alu -28 284 1 1825 88 4 4 chr1 21873395 21873659 -220790694 - AluSc SINE Alu 0 303 40 21 36 0 0 chr1 21873743 21873771 -220790582 + AT_rich Low_complexity Low_complexity 1 28 0 994 150 0 25 chr1 21874111 21874271 -220790082 + FRAM SINE Alu 1 153 -23 239 75 175 0 chr1 21874273 21874313 -220790040 - L1MB2 LINE L1 0 6171 6125 1825 174 92 36 chr1 21874324 21874715 -220789638 - MSTB1 LTR MaLR -19 413 1 2028 83 72 7 chr1 21874724 21875001 -220789352 - AluSg SINE Alu -15 295 1 558 223 0 8 chr1 21875001 21875055 -220789298 - L1MB3 LINE L1 -41 6142 6089 1470 199 20 43 chr1 21875055 21875357 -220788996 + AluJo SINE Alu 1 295 -17 558 223 0 8 chr1 21875357 21875432 -220788921 - L1MB3 LINE L1 -94 6089 6014 895 182 56 20 chr1 21875432 21875630 -220788723 - MER46A DNA MER2_type 0 236 32 2624 68 0 0 chr1 21875643 21875954 -220788399 - AluY SINE Alu 0 311 1 1958 160 9 9 chr1 21875959 21876303 -220788050 - L1MB3 LINE L1 -161 6022 5679 222 37 0 0 chr1 21876304 21876331 -220788022 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1908 108 7 42 chr1 21876339 21876625 -220787728 - AluSx SINE Alu -36 276 1 1509 176 99 0 chr1 21876625 21876897 -220787456 - AluJb SINE Alu -13 299 1 1004 212 43 48 chr1 21876902 21877508 -220786845 - L1M4c LINE L1 -4066 2318 1622 2163 100 13 10 chr1 21877959 21878268 -220786085 + AluSq SINE Alu 1 310 -3 2771 17 0 0 chr1 21878641 21878942 -220785411 + AluYb8 SINE Alu 1 301 -17 2342 107 0 0 chr1 21878976 21879286 -220785067 + AluSg SINE Alu 1 310 0 1246 170 81 35 chr1 21879548 21879860 -220784493 + MER33 DNA MER1_type 1 310 -14 1684 176 19 7 chr1 21879869 21880176 -220784177 - AluJo SINE Alu -1 311 1 1755 150 16 39 chr1 21880263 21880569 -220783784 + AluJo SINE Alu 1 299 -13 730 239 0 50 chr1 21881272 21881431 -220782922 + FRAM SINE Alu 1 143 -33 180 0 0 0 chr1 21881431 21881451 -220782902 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1218 179 113 44 chr1 21881543 21881817 -220782536 - AluJb SINE Alu -19 293 1 966 283 122 42 chr1 21882130 21882373 -220781980 + L2 LINE L2 2558 2780 -533 1765 145 54 85 chr1 21882373 21882760 -220781593 - THE1C LTR MaLR 0 375 1 966 283 122 42 chr1 21882760 21883211 -220781142 + L2 LINE L2 2780 3313 0 24 0 0 0 chr1 21883421 21883445 -220780908 + AT_rich Low_complexity Low_complexity 1 24 0 1586 193 14 14 chr1 21883594 21883890 -220780463 - AluJo SINE Alu -16 296 1 2204 94 24 0 chr1 21883898 21884185 -220780168 - AluSc SINE Alu -15 294 1 273 225 14 0 chr1 21884251 21884322 -220780031 + MER94 DNA DNA 1 72 -62 1058 159 24 0 chr1 21884393 21884563 -220779790 - FRAM SINE Alu -8 168 1 2310 109 3 0 chr1 21884855 21885159 -220779194 + AluSx SINE Alu 5 309 -3 704 134 0 0 chr1 21885535 21885632 -220778721 + AluJ/FLAM SINE Alu 2 98 -214 718 221 16 0 chr1 21885707 21885829 -220778524 + AluJb SINE Alu 2 125 -187 1806 47 5 0 chr1 21885832 21886044 -220778309 - AluY SINE Alu -17 294 82 2719 102 27 35 chr1 21886144 21886468 -220777885 + L1PA15 LINE L1 5746 6068 -97 2148 116 3 22 chr1 21886468 21886779 -220777574 + AluSx SINE Alu 1 305 -7 2719 102 27 35 chr1 21886779 21886858 -220777495 + L1PA15 LINE L1 6068 6146 -19 25 51 0 0 chr1 21886860 21886899 -220777454 + AT_rich Low_complexity Low_complexity 1 39 0 1690 175 3 18 chr1 21887108 21887394 -220776959 + AluJo SINE Alu 1 282 -30 755 355 139 16 chr1 21887423 21888184 -220776169 - L2 LINE L2 -445 2869 2015 227 233 50 0 chr1 21888404 21888464 -220775889 + MIR SINE MIR 190 252 -10 1838 162 23 7 chr1 21888497 21888799 -220775554 - AluSx SINE Alu -5 307 1 1080 173 0 0 chr1 21889003 21889171 -220775182 - AluJb SINE Alu -9 303 136 1550 176 19 42 chr1 21889197 21889504 -220774849 + AluJo SINE Alu 1 300 -12 2312 105 3 0 chr1 21889949 21890253 -220774100 + AluSx SINE Alu 1 305 -7 1780 165 7 7 chr1 21890261 21890552 -220773801 + AluSx SINE Alu 1 291 -21 810 187 0 0 chr1 21890690 21890813 -220773540 + FLAM_C SINE Alu 1 123 -10 1966 155 0 10 chr1 21891118 21891415 -220772938 - AluSx SINE Alu -18 294 1 2102 123 7 7 chr1 21891621 21891923 -220772430 - AluSx SINE Alu -10 302 1 480 85 0 0 chr1 21891923 21891982 -220772371 - AluSq/x SINE Alu -176 136 78 1244 153 5 10 chr1 21891982 21892191 -220772162 - AluSx SINE Alu -100 212 5 4049 40 39 2 chr1 21892312 21892830 -220771523 - L1P LINE L1 -1972 4174 3638 7755 43 2 5 chr1 21892830 21894448 -220769905 + L1PA5 LINE L1 4534 6149 -5 22 0 0 0 chr1 21894448 21894470 -220769883 + AT_rich Low_complexity Low_complexity 1 22 0 5496 40 0 5 chr1 21894483 21895144 -220769209 + L1PA5 LINE L1 5519 6176 0 360 258 19 0 chr1 21895199 21895296 -220769057 + FRAM/FAM SINE Alu 1 72 -103 601 164 43 0 chr1 21895415 21895531 -220768822 - MER46C DNA MER2_type -69 269 149 1477 175 12 4 chr1 21895700 21895951 -220768402 - AluJo SINE Alu -59 253 1 2199 172 57 2 chr1 21896454 21896860 -220767493 + L1PB4 LINE L1 5715 6142 -14 695 137 43 0 chr1 21897294 21897411 -220766942 + L1MB3 LINE L1 6059 6180 -3 1396 229 21 11 chr1 21897920 21898296 -220766057 + L1MC3 LINE L1 4758 5137 -1009 821 142 0 31 chr1 21898297 21898424 -220765929 + FLAM_C SINE Alu 1 123 -20 466 219 8 126 chr1 21898433 21898598 -220765755 + L1MC3 LINE L1 5121 5249 -897 1691 184 13 7 chr1 21898598 21898908 -220765445 + AluJb SINE Alu 1 312 0 466 219 8 126 chr1 21898908 21898988 -220765365 + L1MC3 LINE L1 5249 5337 -809 1509 186 52 4 chr1 21899006 21899275 -220765078 - AluJo SINE Alu -30 282 1 2090 219 24 91 chr1 21899277 21899851 -220764502 + L1MC3 LINE L1 5317 5864 -302 285 98 0 0 chr1 21899851 21899892 -220764461 + Alu SINE Alu 242 282 -20 2090 219 24 91 chr1 21899892 21900144 -220764209 + L1MC3 LINE L1 5864 6131 -35 1365 157 66 15 chr1 21900147 21900421 -220763932 + L1MB8 LINE L1 5584 5871 -307 553 246 7 21 chr1 21900828 21900970 -220763383 - MIR SINE MIR -90 172 33 1981 145 6 6 chr1 21902169 21902480 -220761873 + AluSx SINE Alu 1 311 -1 2146 106 20 0 chr1 21902897 21903190 -220761163 + AluSq SINE Alu 1 299 -14 2213 119 0 0 chr1 21904325 21904620 -220759733 + AluSx SINE Alu 1 295 -17 200 125 25 0 chr1 21904620 21904660 -220759693 + (TA)n Simple_repeat Simple_repeat 2 42 0 306 0 0 0 chr1 21904660 21904694 -220759659 + (CA)n Simple_repeat Simple_repeat 2 35 0 536 229 206 56 chr1 21904696 21904813 -220759540 - MIR SINE MIR -15 247 149 2028 121 0 43 chr1 21904813 21905135 -220759218 + AluJb SINE Alu 4 311 -1 536 229 206 56 chr1 21905135 21905231 -220759122 - MIR SINE MIR -113 149 2 1160 178 54 31 chr1 21905299 21905558 -220758795 + AluJo SINE Alu 29 293 -19 1137 150 62 5 chr1 21905648 21905841 -220758512 + MER2 DNA MER2_type 1 204 -141 1273 186 51 41 chr1 21905841 21906165 -220758188 - AluJb SINE Alu 0 312 1 525 151 0 0 chr1 21906199 21906272 -220758081 - AluJ/FLAM SINE Alu -238 74 2 544 293 90 5 chr1 21906272 21906460 -220757893 + L2 LINE L2 3109 3312 -1 2521 50 0 10 chr1 21906811 21907110 -220757243 + AluY SINE Alu 1 296 -15 2143 104 7 3 chr1 21907115 21907413 -220756940 + AluSq SINE Alu 1 299 -14 1360 259 132 84 chr1 21907725 21907920 -220756433 + L1MCc LINE L1 19 203 -6220 2244 95 7 7 chr1 21907920 21908216 -220756137 + AluSq SINE Alu 1 296 -17 1360 259 132 84 chr1 21908216 21908997 -220755356 + L1MCc LINE L1 203 945 -5478 646 149 75 0 chr1 21908997 21909104 -220755249 + AluJo/FLAM SINE Alu 2 116 -186 2143 111 0 14 chr1 21909104 21909401 -220754952 - AluSx SINE Alu -4 308 16 1360 259 132 84 chr1 21909401 21909540 -220754813 + L1MCc LINE L1 944 1328 -5095 521 259 126 66 chr1 21909808 21910072 -220754281 + L1MCc LINE L1 1369 1616 -5325 2126 131 0 23 chr1 21910072 21910378 -220753975 + AluSx SINE Alu 1 299 -13 521 259 126 66 chr1 21910378 21910821 -220753532 + L1MCc LINE L1 1616 2128 -4813 1594 167 39 39 chr1 21910821 21911132 -220753221 + AluJb SINE Alu 1 311 -1 521 259 126 66 chr1 21911132 21911185 -220753168 + L1MCc LINE L1 2128 2176 -4765 1562 185 34 20 chr1 21911569 21911861 -220752492 - AluJo SINE Alu -16 296 1 2095 136 0 3 chr1 21911904 21912205 -220752148 - AluSx SINE Alu -12 300 1 2364 84 0 7 chr1 21912347 21912646 -220751707 - AluSg SINE Alu -13 297 1 2073 142 3 3 chr1 21913508 21913819 -220750534 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr1 21915004 21915031 -220749322 + AT_rich Low_complexity Low_complexity 1 27 0 568 222 27 0 chr1 21915241 21915586 -220748767 + (CATA)n Simple_repeat Simple_repeat 1 354 0 2100 109 3 26 chr1 21917926 21918229 -220746124 - AluSg SINE Alu -14 296 1 243 88 0 0 chr1 21918323 21918357 -220745996 + (CA)n Simple_repeat Simple_repeat 2 35 0 2424 81 0 0 chr1 21918357 21918653 -220745700 - AluSx SINE Alu -16 296 1 1495 157 100 0 chr1 21918951 21919212 -220745141 + AluJb SINE Alu 1 287 -25 1457 124 171 19 chr1 21919506 21919763 -220744590 - AluSg1 SINE Alu -11 298 3 557 153 9 27 chr1 21921189 21921300 -220743053 - FAM SINE Alu -2 183 75 2146 124 3 0 chr1 21921333 21921640 -220742713 - AluSx SINE Alu -4 308 1 225 0 0 0 chr1 21922382 21922407 -220741946 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr1 21923227 21923248 -220741105 + AT_rich Low_complexity Low_complexity 1 21 0 2287 80 0 10 chr1 21923289 21923588 -220740765 - AluSg SINE Alu -14 296 1 1583 178 3 25 chr1 21924122 21924408 -220739945 + AluJo SINE Alu 3 282 -30 207 0 0 0 chr1 21924414 21924437 -220739916 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1466 170 180 23 chr1 21924551 21925049 -220739304 + Tigger1 DNA MER2_type 1 643 -1775 717 171 0 0 chr1 21925138 21925249 -220739104 - AluJb SINE Alu -187 125 15 3512 193 78 50 chr1 21925273 21925715 -220738638 + Charlie1 DNA MER1_type 1470 1898 -863 2124 54 68 0 chr1 21925715 21925993 -220738360 + AluSc SINE Alu 1 297 -12 3512 193 78 50 chr1 21925993 21926124 -220738229 + Charlie1 DNA MER1_type 1898 2024 -737 1730 175 3 7 chr1 21926124 21926409 -220737944 - AluJb SINE Alu -28 284 1 3512 193 78 50 chr1 21926409 21926789 -220737564 + Charlie1 DNA MER1_type 2024 2451 -310 389 138 38 25 chr1 21926868 21926948 -220737405 + Charlie1 DNA MER1_type 2444 2524 -237 875 162 78 0 chr1 21926975 21927129 -220737224 - FRAM SINE Alu 0 166 1 296 367 28 18 chr1 21928775 21928884 -220735469 - MIR SINE MIR -129 133 24 180 0 0 0 chr1 21931226 21931246 -220733107 + (GGA)n Simple_repeat Simple_repeat 3 22 0 228 271 186 0 chr1 21931684 21931786 -220732567 + MIR SINE MIR 21 151 -63 636 240 82 20 chr1 21932059 21932190 -220732163 + MER3 DNA MER1_type 2 150 -59 1901 174 0 0 chr1 21932190 21932494 -220731859 - AluSx SINE Alu -8 304 1 636 240 82 20 chr1 21932494 21932558 -220731795 + MER3 DNA MER1_type 150 209 0 4389 134 22 52 chr1 21932908 21933097 -220731256 - Tigger1 DNA MER2_type -1 2417 2224 2242 90 14 0 chr1 21933097 21933387 -220730966 - AluSg SINE Alu -16 294 1 4389 134 22 52 chr1 21933387 21933576 -220730777 - Tigger1 DNA MER2_type -194 2224 2031 1927 142 13 10 chr1 21933576 21933885 -220730468 - AluSx SINE Alu -2 310 1 4389 134 22 52 chr1 21933885 21934196 -220730157 - Tigger1 DNA MER2_type -387 2031 1754 2167 114 3 3 chr1 21934196 21934504 -220729849 - AluSq SINE Alu -5 308 1 4389 134 22 52 chr1 21934504 21934641 -220729712 - Tigger1 DNA MER2_type -664 1754 1614 532 234 9 0 chr1 21934750 21934857 -220729496 - FLAM_A SINE Alu -33 109 2 9069 124 47 31 chr1 21934857 21936417 -220727936 - Tigger1 DNA MER2_type -832 1586 1 544 342 88 53 chr1 21936925 21937006 -220727347 + L3 LINE CR1 611 688 -889 1723 58 22 18 chr1 21937006 21937232 -220727121 - AluY SINE Alu -2 309 83 544 342 88 53 chr1 21937232 21937966 -220726387 + L3 LINE CR1 688 1455 -122 22 0 0 0 chr1 21938240 21938262 -220726091 + AT_rich Low_complexity Low_complexity 1 22 0 330 255 57 28 chr1 21938781 21938887 -220725466 + MIR SINE MIR 95 203 -59 2363 78 0 3 chr1 21938892 21939187 -220725166 + AluSc SINE Alu 3 296 -13 855 147 81 33 chr1 21939213 21939424 -220724929 - L1M3 LINE L1 -709 5474 5254 347 74 0 0 chr1 21939425 21939479 -220724874 - Alu SINE Alu -1 301 248 24 32 0 0 chr1 21939956 21939987 -220724366 + AT_rich Low_complexity Low_complexity 1 31 0 1823 158 3 35 chr1 21939988 21940298 -220724055 - AluJb SINE Alu -12 300 1 2121 124 3 3 chr1 21940724 21941031 -220723322 - AluSx SINE Alu -5 307 1 543 319 93 20 chr1 21941498 21941702 -220722651 - MIR SINE MIR -26 236 18 295 234 117 54 chr1 21942068 21942187 -220722166 - MIR SINE MIR -41 167 53 34 42 0 0 chr1 21942340 21942388 -220721965 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 21943270 21943292 -220721061 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr1 21943572 21943609 -220720744 + (CA)n Simple_repeat Simple_repeat 2 38 0 198 91 0 0 chr1 21945953 21945986 -220718367 + (A)n Simple_repeat Simple_repeat 1 33 0 1418 166 0 65 chr1 21948340 21948630 -220715723 - AluJo SINE Alu -5 307 37 709 106 9 26 chr1 21948642 21948755 -220715598 - FLAM_A SINE Alu -12 130 20 255 294 141 25 chr1 21949770 21949933 -220714420 + MIR SINE MIR 20 201 -61 243 296 12 12 chr1 21949951 21950032 -220714321 - MIR SINE MIR -108 154 74 285 214 0 0 chr1 21952261 21952317 -220712036 - MIR SINE MIR -10 252 197 2210 120 0 0 chr1 21952476 21952768 -220711585 + AluSq SINE Alu 3 294 -19 198 0 0 0 chr1 21952874 21952896 -220711457 + (A)n Simple_repeat Simple_repeat 1 22 0 312 227 145 82 chr1 21952910 21953117 -220711236 + L1ME4a LINE L1 5724 5943 -178 27 0 0 0 chr1 21953285 21953312 -220711041 + AT_rich Low_complexity Low_complexity 1 27 0 802 179 80 0 chr1 21953364 21953515 -220710838 + AluJb SINE Alu 136 298 -14 22 35 0 0 chr1 21953566 21953595 -220710758 + AT_rich Low_complexity Low_complexity 1 29 0 2279 99 0 10 chr1 21953695 21953998 -220710355 - AluSx SINE Alu -12 300 1 232 299 34 20 chr1 21954213 21954360 -220709993 + L1P LINE L1 4904 5052 -1094 1755 185 3 3 chr1 21954537 21954839 -220709514 - AluJo SINE Alu -10 302 1 2260 82 0 0 chr1 21955031 21955311 -220709042 - AluSg SINE Alu -30 280 1 696 208 7 7 chr1 21955347 21955501 -220708852 + MER3 DNA MER1_type 12 165 -44 1826 124 99 3 chr1 21955523 21955806 -220708547 + AluSg SINE Alu 1 310 0 482 175 103 0 chr1 21955827 21955953 -220708400 - L1MB2 LINE L1 -16 6155 6017 233 188 24 94 chr1 21955959 21956044 -220708309 + MER3 DNA MER1_type 131 209 0 370 288 69 31 chr1 21956272 21956432 -220707921 + Charlie1a DNA MER1_type 5 170 -1285 1531 164 16 52 chr1 21956649 21957016 -220707337 + L1MB8 LINE L1 5825 6178 0 630 199 93 33 chr1 21957192 21957343 -220707010 + FRAM SINE Alu 1 160 -6 354 109 0 0 chr1 21957802 21957848 -220706505 - Alu SINE Alu -257 46 1 1873 148 36 7 chr1 21957896 21958199 -220706154 + AluSq SINE Alu 1 312 -1 264 212 0 0 chr1 21958201 21958267 -220706086 + GA-rich Low_complexity Low_complexity 3 68 0 260 342 52 19 chr1 21958269 21958424 -220705929 - L3 LINE CR1 -969 608 449 1033 110 0 0 chr1 21958779 21958915 -220705438 + AluSq/x SINE Alu 1 136 -176 27 0 0 0 chr1 21960021 21960048 -220704305 + AT_rich Low_complexity Low_complexity 1 27 0 2147 135 0 0 chr1 21960172 21960468 -220703885 + AluSx SINE Alu 1 296 -16 398 326 105 11 chr1 21960546 21960736 -220703617 + MIR SINE MIR 24 231 -31 2986 110 32 6 chr1 21960972 21961445 -220702908 + L1P4 LINE L1 5280 5764 -401 1517 189 56 56 chr1 21961555 21961931 -220702422 - L1MD2 LINE L1 -69 6290 5915 650 224 128 5 chr1 21961952 21962148 -220702205 + Charlie1a DNA MER1_type 332 551 -904 245 163 0 0 chr1 21962196 21962239 -220702114 + Charlie1a DNA MER1_type 1408 1450 -5 2672 204 29 0 chr1 21962862 21963387 -220700966 + L1PBa LINE L1 1 540 -6323 25 0 0 0 chr1 21963452 21963477 -220700876 + AT_rich Low_complexity Low_complexity 1 25 0 320 315 24 24 chr1 21963830 21963957 -220700396 + L1M4c LINE L1 540 666 -5718 2227 107 3 0 chr1 21964053 21964343 -220700010 + AluSx SINE Alu 1 291 -21 1955 140 3 6 chr1 21964476 21964791 -220699562 - L1PA15 LINE L1 0 6165 5852 2053 134 3 3 chr1 21964801 21965100 -220699253 - AluSx SINE Alu -13 299 1 1405 206 57 73 chr1 21965101 21965660 -220698693 + L1M4c LINE L1 908 1457 -4927 430 187 168 0 chr1 21965660 21965767 -220698586 + FLAM_C SINE Alu 1 125 -18 520 217 89 19 chr1 21965767 21965924 -220698429 + L1M4c LINE L1 1435 1602 -4782 1896 193 52 27 chr1 21966035 21966516 -220697837 + L1MB3 LINE L1 5684 6176 -7 218 175 0 25 chr1 21966541 21966581 -220697772 - MIR SINE MIR -87 121 83 532 245 60 20 chr1 21967102 21967253 -220697100 - AluSp SINE Alu -20 293 137 1705 148 44 7 chr1 21967255 21967526 -220696827 - AluSx SINE Alu -31 281 1 713 183 8 0 chr1 21967693 21967819 -220696534 + FLAM_C SINE Alu 1 127 -6 1576 159 9 59 chr1 21968052 21968372 -220695981 - AluJo SINE Alu -2 310 7 2077 144 19 27 chr1 21968424 21968791 -220695562 + THE1B LTR MaLR 1 364 0 273 157 45 56 chr1 21968835 21968924 -220695429 - MER33 DNA MER1_type -14 349 262 * 515 210 9 20 chr1 21968912 21969039 -220695314 - MER33 DNA MER1_type -250 74 1 2052 134 7 0 chr1 21969108 21969421 -220694932 + AluSx SINE Alu 1 315 0 326 336 49 16 chr1 21971728 21971850 -220692503 - MIR SINE MIR -90 172 47 1246 185 53 69 chr1 21972010 21972313 -220692040 + AluJo SINE Alu 1 298 -14 2609 180 71 92 chr1 21973482 21974656 -220689697 + MER52C LTR ERV1 51 1276 -2 1967 158 3 3 chr1 21974799 21975102 -220689251 + AluJb SINE Alu 1 303 -9 196 188 141 16 chr1 21975533 21975597 -220688756 - L2 LINE L2 -5 3308 3237 338 186 395 16 chr1 21976088 21976212 -220688141 + MER5B DNA MER1_type 8 178 0 1615 214 17 30 chr1 21977101 21977682 -220686671 + L1M4 LINE L1 4590 5124 -1022 615 193 42 78 chr1 21977693 21977885 -220686468 + AluSc SINE Alu 112 296 -13 955 145 16 5 chr1 21977888 21978142 -220686211 + L1M4 LINE L1 5170 5425 -743 2018 197 91 13 chr1 21978204 21978786 -220685567 + MER21B LTR ERV1 2 655 -208 2461 144 46 5 chr1 21978904 21979321 -220685032 + MER57B LTR ERV1 1 434 0 901 153 0 0 chr1 21979456 21979587 -220684766 - FLAM_C SINE Alu -12 131 1 1713 183 33 0 chr1 21980175 21980476 -220683877 - AluJb SINE Alu -1 311 1 1521 150 88 11 chr1 21981808 21982082 -220682271 + AluJb SINE Alu 1 295 -17 1336 166 0 14 chr1 21982836 21983047 -220681306 - AluJb SINE Alu -2 310 103 1388 194 51 17 chr1 21983050 21983343 -220681010 + AluJo SINE Alu 5 307 -5 444 300 62 48 chr1 21985149 21985376 -220678977 - MIR SINE MIR -22 240 11 2098 178 112 20 chr1 21985427 21985973 -220678380 + LTR48 LTR ERV1 192 787 0 1266 260 109 25 chr1 21986491 21987021 -220677332 + LTR41 LTR ERVL 3 577 -196 709 299 15 15 chr1 21987047 21987311 -220677042 + ERVL LTR ERVL 2980 3243 -2521 408 241 241 10 chr1 21987367 21987562 -220676791 + LTR41 LTR ERVL 423 662 -111 1392 162 0 45 chr1 21987866 21988113 -220676240 + AluJo SINE Alu 71 306 -6 517 247 202 4 chr1 21989452 21989699 -220674654 + L1ME1 LINE L1 5866 6161 -5 1430 194 13 61 chr1 21989768 21990078 -220674275 + AluJo SINE Alu 1 295 -17 322 274 18 9 chr1 21990090 21990203 -220674150 + (CATATA)n Simple_repeat Simple_repeat 6 119 0 380 198 87 8 chr1 21990604 21990730 -220673623 - Charlie4 DNA MER1_type -32 1929 1794 5859 61 24 32 chr1 21990742 21991617 -220672736 + SVA Other Other 1 868 -518 1926 127 28 10 chr1 21992290 21992581 -220671772 + AluSq SINE Alu 1 296 -17 1905 129 0 0 chr1 21992748 21993038 -220671315 + AluSx SINE Alu 21 310 0 1072 199 79 14 chr1 21993664 21993880 -220670473 + AluJo SINE Alu 1 230 -82 2005 127 0 56 chr1 21995283 21995606 -220668747 - AluSx SINE Alu -7 305 1 3215 48 5 11 chr1 21995738 21996176 -220668177 - L1P LINE L1 -1594 4552 4118 6649 56 19 42 chr1 21996383 21997359 -220666994 + SVA Other Other 433 1386 0 25 51 0 0 chr1 21998285 21998324 -220666029 + AT_rich Low_complexity Low_complexity 1 39 0 1230 260 55 11 chr1 21999886 22000321 -220664032 + L1ME3A LINE L1 5496 5949 -221 258 314 6 51 chr1 22001107 22001282 -220663071 - Charlie8 DNA MER1_type -2154 263 97 958 185 6 12 chr1 22001397 22001570 -220662783 - AluJ SINE Alu -12 300 129 830 188 0 0 chr1 22001608 22001741 -220662612 - AluJ SINE Alu -169 133 1 21 36 0 0 chr1 22001846 22001874 -220662479 + AT_rich Low_complexity Low_complexity 1 28 0 1673 167 21 14 chr1 22002834 22003122 -220661231 - AluJb SINE Alu -22 290 1 389 309 8 0 chr1 22003124 22003250 -220661103 + MLT1E1 LTR MaLR 4 130 -524 680 222 43 101 chr1 22003314 22003502 -220660851 - L2 LINE L2 -503 2811 2640 746 223 60 6 chr1 22003502 22003668 -220660685 + FAM SINE Alu 1 175 0 680 222 43 101 chr1 22003668 22003736 -220660617 - L2 LINE L2 -674 2640 2570 610 268 55 11 chr1 22003788 22003971 -220660382 - L2 LINE L2 0 3313 3123 945 175 85 0 chr1 22004026 22004237 -220660116 - MER46A DNA MER2_type -7 229 1 383 315 9 0 chr1 22004297 22004405 -220659948 - L2 LINE L2 -976 2338 2230 2304 121 3 0 chr1 22004614 22004919 -220659434 - AluSx SINE Alu -6 306 1 1894 182 0 3 chr1 22004930 22005232 -220659121 - AluJo SINE Alu -11 301 1 225 210 0 16 chr1 22005426 22005474 -220658879 + (TA)n Simple_repeat Simple_repeat 2 50 -12 2205 107 3 3 chr1 22005474 22005763 -220658590 - AluSx SINE Alu -23 289 1 225 210 0 16 chr1 22005763 22005776 -220658577 + (TA)n Simple_repeat Simple_repeat 50 62 0 997 182 0 12 chr1 22005924 22006094 -220658259 - AluJb SINE Alu -12 300 133 1901 117 0 60 chr1 22006600 22006900 -220657453 - AluSx SINE Alu -30 282 1 783 205 70 12 chr1 22008261 22008432 -220655921 + AluJo SINE Alu 112 292 -20 320 317 191 0 chr1 22008472 22008655 -220655698 + MIR SINE MIR 22 239 -23 881 167 172 11 chr1 22008849 22009029 -220655324 + AluJb SINE Alu 83 291 -21 214 178 0 0 chr1 22009167 22009212 -220655141 + A-rich Low_complexity Low_complexity 1 45 0 2258 134 0 0 chr1 22009992 22010305 -220654048 - AluSq SINE Alu 0 313 1 464 108 0 0 chr1 22010741 22010815 -220653538 + Alu SINE Alu 236 309 -3 2208 94 19 23 chr1 22010965 22011272 -220653081 + AluSx SINE Alu 3 308 -4 384 247 0 0 chr1 22011360 22011445 -220652908 + MIR SINE MIR 168 252 -10 712 261 53 0 chr1 22011452 22011640 -220652713 + MIR SINE MIR 44 241 -21 1122 196 54 0 chr1 22011667 22011891 -220652462 - MER46A DNA MER2_type 0 236 1 201 304 0 25 chr1 22012331 22012410 -220651943 + L2 LINE L2 3191 3267 -5 1684 186 0 35 chr1 22013993 22014304 -220650049 + AluJo SINE Alu 1 300 -12 1927 113 92 0 chr1 22014422 22014704 -220649649 + AluSg SINE Alu 1 308 -2 714 173 0 16 chr1 22015122 22015249 -220649104 + FLAM_C SINE Alu 1 125 -18 2219 82 4 0 chr1 22015258 22015572 -220648781 - AluY SINE Alu 0 315 1 25 0 0 0 chr1 22015572 22015597 -220648756 + AT_rich Low_complexity Low_complexity 1 25 0 693 228 73 56 chr1 22015752 22015984 -220648369 - MIR SINE MIR -19 243 8 208 290 50 30 chr1 22016048 22016148 -220648205 + L2 LINE L2 2716 2817 -497 509 154 0 0 chr1 22016186 22016277 -220648076 - MER3 DNA MER1_type -80 129 86 231 331 37 59 chr1 22016316 22016452 -220647901 + L2 LINE L2 2909 3041 -272 637 184 0 18 chr1 22016679 22016793 -220647560 - AluJb SINE Alu -16 296 185 21 0 0 0 chr1 22016943 22016964 -220647389 + AT_rich Low_complexity Low_complexity 1 21 0 741 213 31 76 chr1 22017010 22017235 -220647118 - MER20 DNA MER1_type -4 215 1 24 0 0 0 chr1 22017398 22017422 -220646931 + AT_rich Low_complexity Low_complexity 1 24 0 804 155 14 27 chr1 22017661 22017809 -220646544 + AluJo SINE Alu 3 148 -164 3058 206 17 31 chr1 22017815 22018157 -220646196 + L1MA4A LINE L1 2617 2962 -3886 1993 128 0 25 chr1 22018157 22018478 -220645875 + AluSq SINE Alu 1 313 0 3058 206 17 31 chr1 22018478 22019282 -220645071 + L1MA4A LINE L1 2962 3744 -3104 402 134 12 12 chr1 22019314 22019396 -220644957 + AluS SINE Alu 225 306 -3 3831 170 38 78 chr1 22019396 22020019 -220644334 + L1MA4A LINE L1 5412 6059 -946 1628 168 11 14 chr1 22020019 22020304 -220644049 + AluJo SINE Alu 23 306 -6 3831 170 38 78 chr1 22020304 22020478 -220643875 + L1MA4A LINE L1 6059 6238 -767 2344 88 3 3 chr1 22020478 22020786 -220643567 + AluSp SINE Alu 1 308 -5 3831 170 38 78 chr1 22020786 22021582 -220642771 + L1MA4A LINE L1 6238 6956 -49 2181 128 0 0 chr1 22021582 22021880 -220642473 + AluSx SINE Alu 1 298 -14 3831 170 38 78 chr1 22021880 22021918 -220642435 + L1MA4A LINE L1 6956 6994 -11 355 332 71 33 chr1 22021999 22022210 -220642143 + L3 LINE CR1 494 712 -865 1709 189 0 50 chr1 22022265 22022583 -220641770 + AluJo SINE Alu 1 302 -10 1406 154 0 69 chr1 22022603 22022751 -220641602 + AluJo SINE Alu 1 127 -185 2136 99 7 0 chr1 22022751 22023044 -220641309 + AluSx SINE Alu 3 297 -15 1406 154 0 69 chr1 22023044 22023142 -220641211 + AluJo SINE Alu 127 230 -82 309 119 0 0 chr1 22223145 22223187 -220441166 - Alu SINE Alu -258 45 4 932 150 4 78 chr1 22223333 22223573 -220440780 - AluJb SINE Alu -15 297 2 1437 158 26 0 chr1 22223575 22223809 -220440544 + AluJo SINE Alu 55 294 -18 734 102 39 8 chr1 22224461 22224588 -220439765 + AluSp/q SINE Alu 180 310 -3 249 273 86 40 chr1 22224647 22224845 -220439508 + L1ME LINE L1 5706 5912 -209 2619 226 69 3 chr1 22226024 22226629 -220437724 - MER82 DNA MER2_type -8 645 1 230 304 214 0 chr1 22226708 22226820 -220437533 + MIR3 SINE MIR 37 172 -36 21 0 0 0 chr1 22226893 22226914 -220437439 + AT_rich Low_complexity Low_complexity 1 21 0 40 37 0 0 chr1 22227614 22227668 -220436685 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr1 22229579 22229602 -220434751 + (CA)n Simple_repeat Simple_repeat 1 23 0 304 279 50 9 chr1 22229606 22229771 -220434582 - MLT1L LTR MaLR -60 528 353 251 274 0 0 chr1 22230380 22230442 -220433911 + MIR SINE MIR 82 143 -65 1371 186 39 81 chr1 22230731 22231113 -220433240 + MLT1A2 LTR MaLR 8 373 -1 1098 240 102 0 chr1 22231120 22231424 -220432929 - MER89 LTR ERV1 -24 535 201 447 266 70 0 chr1 22231894 22232022 -220432331 + MIR SINE MIR 123 259 -3 195 42 0 0 chr1 22232183 22232207 -220432146 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 1972 156 81 36 chr1 22233138 22233229 -220431124 - L1MB7 LINE L1 -314 5870 5785 1348 203 7 32 chr1 22233229 22233418 -220430935 - AluJo SINE Alu -10 302 123 2325 59 3 0 chr1 22233418 22233707 -220430646 + AluY SINE Alu 1 290 -21 1348 203 7 32 chr1 22233707 22233827 -220430526 - AluJo SINE Alu -189 123 1 1686 173 0 3 chr1 22233830 22234150 -220430203 - AluJo SINE Alu 0 319 1 1972 156 81 36 chr1 22234150 22234471 -220429882 - L1MB7 LINE L1 -400 5784 5434 1045 259 90 32 chr1 22234473 22234979 -220429374 - L2 LINE L2 -8 3305 2772 2254 105 0 3 chr1 22234980 22235293 -220429060 + AluSx SINE Alu 1 312 0 1660 149 22 7 chr1 22235407 22235718 -220428635 - AluJb SINE Alu 0 320 6 246 162 0 0 chr1 22235722 22235756 -220428597 + MIR3 SINE MIR 122 155 -53 427 316 0 9 chr1 22235756 22235870 -220428483 + MER5B DNA MER1_type 1 113 -65 296 248 97 62 chr1 22236699 22236844 -220427509 + L2 LINE L2 2989 3138 -175 2342 90 7 0 chr1 22236862 22237172 -220427181 - AluSq SINE Alu -1 312 1 1583 136 47 36 chr1 22237294 22237429 -220426924 - AluJo SINE Alu -30 282 150 1666 151 0 89 chr1 22237429 22237766 -220426587 - AluJb SINE Alu -3 309 3 1583 136 47 36 chr1 22237766 22237909 -220426444 - AluJo SINE Alu -162 150 1 991 203 15 71 chr1 22237919 22238050 -220426303 - L1MB8 LINE L1 -11 6167 6057 2078 77 13 37 chr1 22238050 22238348 -220426005 + AluY SINE Alu 13 303 -8 991 203 15 71 chr1 22238348 22238482 -220425871 - L1MB8 LINE L1 -121 6057 5917 1301 173 36 28 chr1 22238482 22238613 -220425740 + AluJb SINE Alu 1 136 -176 2490 36 7 0 chr1 22238613 22238914 -220425439 + AluY SINE Alu 1 303 -8 1301 173 36 28 chr1 22238914 22239030 -220425323 + AluJb SINE Alu 136 250 -62 254 243 142 46 chr1 22239235 22239474 -220424879 + L1ME LINE L1 5596 5857 -264 1903 113 13 13 chr1 22239475 22239784 -220424569 + AluSx SINE Alu 2 310 -2 244 241 19 0 chr1 22239835 22239889 -220424464 + L1ME4a LINE L1 5606 5660 -699 1143 144 77 0 chr1 22239941 22240135 -220424218 + AluJo SINE Alu 75 283 -29 21 0 0 0 chr1 22240439 22240460 -220423893 + AT_rich Low_complexity Low_complexity 1 21 0 2235 90 3 0 chr1 22240460 22240760 -220423593 + AluY SINE Alu 1 301 -10 365 303 35 35 chr1 22240930 22240946 -220423407 + L1ME4a LINE L1 5969 5984 -137 2243 106 0 0 chr1 22240946 22241257 -220423096 + AluSq SINE Alu 1 311 -2 365 303 35 35 chr1 22241257 22241382 -220422971 + L1ME4a LINE L1 5983 6110 -11 222 37 0 0 chr1 22242030 22242057 -220422296 + (CA)n Simple_repeat Simple_repeat 1 27 0 1953 121 3 33 chr1 22243031 22243338 -220421015 - AluSx SINE Alu -14 298 1 227 276 13 13 chr1 22243380 22243451 -220420902 + L2 LINE L2 2466 2537 -773 189 0 0 0 chr1 22243451 22243472 -220420881 + (CCCCAG)n Simple_repeat Simple_repeat 2 22 0 2395 56 0 16 chr1 22243566 22243869 -220420484 - AluY SINE Alu -13 298 1 2517 143 2 27 chr1 22243869 22244281 -220420072 - L1MC1 LINE L1 -482 5851 5450 297 0 0 0 chr1 22244363 22244396 -220419957 + (TA)n Simple_repeat Simple_repeat 2 34 0 2326 108 22 40 chr1 22244620 22244991 -220419362 - THE1B LTR MaLR 0 364 1 391 266 0 21 chr1 22245389 22245483 -220418870 + L1MC4 LINE L1 6615 6706 -1336 1808 155 0 14 chr1 22245483 22245780 -220418573 + AluJo SINE Alu 1 293 -19 304 218 35 58 chr1 22245780 22245795 -220418558 - L1MC3 LINE L1 -1209 6576 6562 2333 73 0 13 chr1 22245808 22246121 -220418232 - AluY SINE Alu -2 309 1 1514 173 20 10 chr1 22246383 22246684 -220417669 + AluJo SINE Alu 1 304 -8 294 206 58 62 chr1 22246704 22246774 -220417579 - L1P LINE L1 -2383 3763 3694 252 0 0 0 chr1 22246774 22246802 -220417551 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 1753 147 0 3 chr1 22246806 22247091 -220417262 - AluJb SINE Alu -28 284 1 294 206 58 62 chr1 22247091 22247181 -220417172 - L1P LINE L1 -2455 3691 3606 195 382 0 45 chr1 22247410 22247520 -220416833 + MIR3 SINE MIR 104 208 0 1440 137 9 0 chr1 22247574 22247793 -220416560 + AluJb SINE Alu 83 303 -9 947 116 0 58 chr1 22248391 22248563 -220415790 - L1PA5 LINE L1 0 6154 5993 1146 92 0 12 chr1 22248568 22248732 -220415621 - L1PA5 LINE L1 0 6154 5993 922 180 0 17 chr1 22248732 22248910 -220415443 - FRAM SINE Alu -2 174 1 1799 111 11 4 chr1 22249359 22249630 -220414723 - AluSq SINE Alu -40 273 1 469 204 43 0 chr1 22249667 22249760 -220414593 - MIR SINE MIR -77 185 89 1482 127 79 0 chr1 22249806 22250035 -220414318 - AluJo SINE Alu -32 280 34 2236 110 0 0 chr1 22250290 22250598 -220413755 - AluSx SINE Alu -4 308 1 255 322 11 0 chr1 22250603 22250690 -220413663 - MIR SINE MIR -60 148 61 195 343 56 35 chr1 22250795 22250938 -220413415 - MIR SINE MIR -71 191 46 505 230 22 7 chr1 22250971 22251106 -220413247 - L2 LINE L2 -7 3306 3170 210 262 98 16 chr1 22251137 22251198 -220413155 + L3 LINE CR1 574 639 -938 180 111 0 0 chr1 22251430 22251457 -220412896 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 2006 121 0 7 chr1 22251593 22251890 -220412463 - AluSx SINE Alu -17 295 1 2367 158 51 32 chr1 22251902 22251976 -220412377 - L1MB8 LINE L1 -1 6177 6106 2428 58 0 10 chr1 22251976 22252287 -220412066 - AluY SINE Alu -3 308 1 2367 158 51 32 chr1 22252287 22252706 -220411647 - L1MB8 LINE L1 -72 6106 5675 1639 159 15 0 chr1 22252714 22252985 -220411368 - AluJo SINE Alu -21 291 17 1459 159 60 19 chr1 22252991 22253011 -220411342 - L1MB7 LINE L1 -1 6183 6165 2225 98 0 0 chr1 22253011 22253306 -220411047 + AluSq SINE Alu 1 295 -18 1459 159 60 19 chr1 22253306 22253599 -220410754 - L1MB7 LINE L1 -19 6165 5857 917 140 7 0 chr1 22253714 22253857 -220410496 + AluSx SINE Alu 58 201 -111 8380 118 8 2 chr1 22253857 22255002 -220409351 + THE1A-int LTR MaLR 429 1580 0 2426 102 11 8 chr1 22255002 22255354 -220408999 + THE1A LTR MaLR 1 353 -2 711 184 9 0 chr1 22255355 22255469 -220408884 - AluJb SINE Alu -197 115 1 271 236 34 45 chr1 22255469 22255558 -220408795 + L1MC4 LINE L1 7815 7902 -140 2446 56 0 13 chr1 22255683 22255988 -220408365 + AluSp SINE Alu 1 301 -12 379 306 68 38 chr1 22255997 22256232 -220408121 + L1ME LINE L1 4428 4669 -1477 632 151 118 34 chr1 22256240 22256359 -220407994 + FLAM_C SINE Alu 3 131 -2 325 77 0 0 chr1 22256404 22256443 -220407910 - MER4A LTR ERV1 -72 592 554 413 330 46 29 chr1 22256488 22257088 -220407265 + L1ME LINE L1 4824 5432 -749 285 307 0 0 chr1 22257139 22257214 -220407139 + L1ME LINE L1 5442 5516 -650 2169 81 3 0 chr1 22258792 22259108 -220405245 - AluSx SINE Alu 0 317 1 6964 129 60 11 chr1 22259109 22259698 -220404655 - MER41-int LTR ERV1 -2603 3343 2784 2188 92 7 0 chr1 22259698 22260004 -220404349 - AluY SINE Alu -3 308 1 6964 129 60 11 chr1 22260004 22260043 -220404310 - MER41-int LTR ERV1 -3162 2784 2748 2095 125 0 19 chr1 22260043 22260356 -220403997 - AluSx SINE Alu -5 307 1 6964 129 60 11 chr1 22260356 22260866 -220403487 - MER41-int LTR ERV1 -3198 2748 2149 2066 114 0 10 chr1 22260867 22261174 -220403179 + AluSg SINE Alu 1 304 -6 189 0 0 0 chr1 22261323 22261344 -220403009 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1946 139 7 0 chr1 22261349 22261652 -220402701 - AluSp SINE Alu -8 305 1 2330 193 50 76 chr1 22261652 22261839 -220402514 + L1M4 LINE L1 4319 4509 -1637 1428 174 18 18 chr1 22261839 22262121 -220402232 - AluJb SINE Alu -30 282 1 2330 193 50 76 chr1 22262121 22262339 -220402014 + L1M4 LINE L1 4509 4731 -1415 2160 99 0 0 chr1 22262339 22262641 -220401712 - AluSc SINE Alu -7 302 1 2330 193 50 76 chr1 22262641 22262908 -220401445 + L1M4 LINE L1 4731 4975 -1171 873 218 0 29 chr1 22262908 22263082 -220401271 + AluJb SINE Alu 125 293 -19 2082 141 8 45 chr1 22263082 22263427 -220400926 + L1M4 LINE L1 4985 5319 -852 1880 127 53 0 chr1 22263427 22263711 -220400642 + AluJb SINE Alu 1 299 -13 2082 141 8 45 chr1 22263711 22263818 -220400535 + L1M4 LINE L1 5319 5428 -743 292 77 295 0 chr1 22263864 22263933 -220400420 + L1M4 LINE L1 5403 5488 -690 1975 71 0 4 chr1 22264052 22264306 -220400047 - AluY SINE Alu -58 253 1 1246 144 36 0 chr1 22264306 22264500 -220399853 - AluSx SINE Alu -111 201 1 679 135 199 7 chr1 22264502 22264643 -220399710 + MLT1A1-int LTR MaLR 1563 1730 -5 1722 150 81 32 chr1 22264649 22264787 -220399566 + MLT1A1 LTR MaLR 3 133 -232 1696 184 3 3 chr1 22264787 22265076 -220399277 + AluJb SINE Alu 1 292 -20 207 0 0 0 chr1 22265076 22265099 -220399254 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1722 150 81 32 chr1 22265108 22265315 -220399038 + MLT1A1 LTR MaLR 133 365 0 484 143 0 41 chr1 22265316 22265414 -220398939 + L1MB5 LINE L1 6081 6174 0 1693 148 10 96 chr1 22265415 22265813 -220398540 + L1MB8 LINE L1 5815 6178 0 3937 132 17 22 chr1 22265834 22266402 -220397951 - MER41B LTR ERV1 0 635 68 2220 82 0 0 chr1 22266402 22266723 -220397630 - AluSg SINE Alu 0 321 1 3937 132 17 22 chr1 22266723 22266791 -220397562 - MER41B LTR ERV1 -567 68 1 12419 94 27 11 chr1 22266794 22268070 -220396283 - MER41B-int LTR ERV1 -2 5944 4628 2081 117 7 3 chr1 22268070 22268369 -220395984 + AluSx SINE Alu 1 300 -12 12419 94 27 11 chr1 22268369 22268887 -220395466 - MER41B-int LTR ERV1 -1318 4628 4120 2111 141 35 28 chr1 22270460 22270837 -220393516 - MER41B-int LTR ERV1 -1808 4138 3582 1827 113 7 29 chr1 22270837 22271111 -220393242 + AluSx SINE Alu 1 268 -44 2111 141 35 28 chr1 22271111 22271201 -220393152 - MER41B-int LTR ERV1 -2364 3582 3494 4073 136 5 0 chr1 22271210 22271811 -220392542 - LTR10E LTR ERV1 -29 604 1 11702 148 51 62 chr1 22271811 22272017 -220392336 - MER41B-int LTR ERV1 -2447 3499 3292 2308 93 3 0 chr1 22272017 22272328 -220392025 - AluSx SINE Alu 0 312 1 11702 148 51 62 chr1 22272328 22272918 -220391435 - MER41B-int LTR ERV1 -2654 3292 2697 2431 68 3 0 chr1 22272918 22273225 -220391128 - AluY SINE Alu -3 308 1 11702 148 51 62 chr1 22273225 22273264 -220391089 - MER41B-int LTR ERV1 -3249 2697 2659 2118 125 0 19 chr1 22273264 22273577 -220390776 - AluSx SINE Alu -5 307 1 11702 148 51 62 chr1 22273577 22274088 -220390265 - MER41B-int LTR ERV1 -3287 2659 2144 2299 88 0 10 chr1 22274088 22274396 -220389957 + AluSg SINE Alu 1 305 -5 11702 148 51 62 chr1 22274396 22274952 -220389401 - MER41B-int LTR ERV1 -3802 2144 1583 2067 117 7 0 chr1 22274952 22275251 -220389102 - AluSx SINE Alu -11 301 1 11702 148 51 62 chr1 22275251 22275389 -220388964 - MER41B-int LTR ERV1 -4363 1583 1445 1832 136 38 79 chr1 22275389 22275780 -220388573 + THE1C LTR MaLR 1 375 0 11702 148 51 62 chr1 22275780 22276164 -220388189 - MER41B-int LTR ERV1 -4501 1445 1058 1967 78 95 0 chr1 22276164 22276448 -220387905 + AluY SINE Alu 1 311 0 11702 148 51 62 chr1 22276448 22277273 -220387080 - MER41B-int LTR ERV1 -4888 1058 327 843 149 0 8 chr1 22277273 22277407 -220386946 - FLAM_C SINE Alu 0 133 1 11702 148 51 62 chr1 22277407 22277731 -220386622 - MER41B-int LTR ERV1 -5619 327 1 2500 137 9 19 chr1 22277731 22277802 -220386551 - MER41B LTR ERV1 0 635 565 2136 106 0 10 chr1 22277802 22278105 -220386248 + AluSx SINE Alu 1 300 -12 2500 137 9 19 chr1 22278105 22278456 -220385897 - MER41B LTR ERV1 -70 565 217 189 0 0 0 chr1 22278456 22278477 -220385876 + (T)n Simple_repeat Simple_repeat 1 21 0 6507 63 23 41 chr1 22278496 22279468 -220384885 - SVA Other Other 0 1386 433 1227 92 33 64 chr1 22279481 22279946 -220384407 - SVA Other Other -520 866 519 4946 69 54 55 chr1 22279969 22280919 -220383434 - SVA Other Other -518 868 57 1028 31 0 8 chr1 22280919 22281048 -220383305 + (GGGAGA)n Simple_repeat Simple_repeat 1 128 0 1168 114 76 14 chr1 22281048 22281097 -220383256 - MER41B LTR ERV1 -411 224 179 1923 138 7 0 chr1 22281097 22281387 -220382966 - AluSx SINE Alu -20 292 1 1168 114 76 14 chr1 22281387 22281548 -220382805 - MER41B LTR ERV1 -456 179 1 411 208 83 101 chr1 22281551 22281676 -220382677 + L1MC4 LINE L1 7789 7912 -130 1051 164 5 59 chr1 22281676 22281754 -220382599 - MER3 DNA MER1_type 0 209 128 2082 77 7 14 chr1 22281754 22282041 -220382312 + AluY SINE Alu 23 307 -4 1051 164 5 59 chr1 22282041 22282181 -220382172 - MER3 DNA MER1_type -81 128 3 411 208 83 101 chr1 22282181 22282223 -220382130 + L1MC4 LINE L1 7912 7953 -89 2022 203 62 16 chr1 22282280 22282719 -220381634 + LTR2B LTR ERV1 32 490 0 3467 131 115 31 chr1 22282767 22283417 -220380936 + MER50 LTR ERV1 7 711 -23 513 288 54 16 chr1 22283695 22283879 -220380474 + MIR SINE MIR 29 219 -43 295 250 65 28 chr1 22284508 22284616 -220379737 + MIR SINE MIR 41 152 -110 365 213 147 88 chr1 22284663 22284708 -220379645 + MIR SINE MIR 119 160 -102 2140 90 0 0 chr1 22284708 22285013 -220379340 + AluSg SINE Alu 1 305 0 365 213 147 88 chr1 22285013 22285100 -220379253 + MIR SINE MIR 160 262 0 2084 133 0 0 chr1 22285109 22285409 -220378944 - AluSx SINE Alu -12 300 1 378 163 12 23 chr1 22285496 22285582 -220378771 + MER46C DNA MER2_type 30 114 -224 2376 60 3 16 chr1 22285606 22285921 -220378432 + AluY SINE Alu 1 311 0 481 227 0 0 chr1 22285981 22286078 -220378275 + MER46C DNA MER2_type 242 338 0 753 270 169 27 chr1 22286213 22286620 -220377733 - LTR67 LTR ERVL -9 548 84 514 279 91 32 chr1 22286849 22287068 -220377285 - MIR SINE MIR -24 238 7 533 244 7 7 chr1 22287068 22287203 -220377150 + MER117 DNA MER1_type 5 139 -58 871 245 61 0 chr1 22287204 22287482 -220376871 + L1M4 LINE L1 2649 2943 -3203 981 170 0 0 chr1 22287482 22287647 -220376706 + FAM SINE Alu 10 174 -11 451 214 19 105 chr1 22287647 22287716 -220376637 + L1M4 LINE L1 2967 3040 -3106 1928 83 4 15 chr1 22287716 22287981 -220376372 + AluY SINE Alu 34 295 -16 451 214 19 105 chr1 22287981 22288121 -220376232 + L1M4 LINE L1 3040 3158 -2988 606 254 75 28 chr1 22288370 22288583 -220375770 - MLT1K LTR MaLR 0 588 366 245 222 37 26 chr1 22288669 22288747 -220375606 - MLT1H LTR MaLR -267 173 57 1419 177 55 50 chr1 22289678 22289722 -220374631 - MLT1A1 LTR MaLR -2 363 321 2555 105 5 30 chr1 22289722 22290095 -220374258 + THE1B LTR MaLR 1 364 0 1419 177 55 50 chr1 22290095 22290411 -220373942 - MLT1A1 LTR MaLR -44 321 1 208 275 88 38 chr1 22290514 22290594 -220373759 + MIR SINE MIR 30 113 -95 291 305 62 23 chr1 22290702 22290830 -220373523 + MIR SINE MIR 50 182 -80 2091 108 0 0 chr1 22291803 22292091 -220372262 - AluSx SINE Alu -13 299 12 612 277 89 57 chr1 22292158 22292494 -220371859 - L2 LINE L2 -1 3312 2966 244 209 0 0 chr1 22292562 22292623 -220371730 - MER106A DNA MER1_type -76 160 118 2251 85 0 0 chr1 22292737 22293031 -220371322 + AluSx SINE Alu 1 294 -18 277 268 232 72 chr1 22293118 22293424 -220370929 + L2 LINE L2 2306 2660 -654 2283 95 3 0 chr1 22293698 22294004 -220370349 + AluSc SINE Alu 1 307 -2 719 144 0 25 chr1 22295310 22295428 -220368925 - FLAM_C SINE Alu -27 116 2 1961 99 61 0 chr1 22295453 22295746 -220368607 - AluY SINE Alu 0 311 1 339 338 124 0 chr1 22295752 22295897 -220368456 - MIR SINE MIR -53 209 47 195 366 65 0 chr1 22296095 22296188 -220368165 + L2 LINE L2 3194 3292 -21 2070 82 4 0 chr1 22296189 22296459 -220367894 - AluSx SINE Alu -18 294 24 184 294 0 0 chr1 22296771 22296822 -220367531 + L2 LINE L2 3211 3261 -52 327 222 42 0 chr1 22296865 22296937 -220367416 + L2 LINE L2 3239 3313 0 2362 63 0 10 chr1 22297070 22297371 -220366982 - AluY SINE Alu -13 298 1 204 306 14 0 chr1 22297374 22297446 -220366907 - MIR SINE MIR -14 248 176 465 207 59 30 chr1 22297866 22298001 -220366352 - MIR SINE MIR -28 234 96 2260 93 0 0 chr1 22298001 22298292 -220366061 + AluSx SINE Alu 1 291 -21 2058 98 20 0 chr1 22298296 22298592 -220365761 + AluSp SINE Alu 3 304 -9 1193 80 0 0 chr1 22298592 22298754 -220365599 + AluY SINE Alu 133 294 -17 232 143 95 0 chr1 22298756 22298798 -220365555 - MER3 DNA MER1_type -117 92 47 194 186 23 0 chr1 22299930 22299973 -220364380 + L2 LINE L2 3014 3057 -215 303 261 27 0 chr1 22300505 22300600 -220363753 - MIR SINE MIR -76 132 32 494 237 64 17 chr1 22300684 22300899 -220363454 + MIR SINE MIR 18 244 -18 312 248 0 41 chr1 22301227 22301330 -220363023 + MIR SINE MIR 73 152 -56 1921 123 24 3 chr1 22301376 22301669 -220362684 - AluSx SINE Alu -13 299 1 2077 121 10 3 chr1 22302160 22302466 -220361887 + AluSx SINE Alu 1 308 -4 692 197 23 15 chr1 22302475 22302607 -220361746 + FLAM_A SINE Alu 1 133 0 1047 311 33 19 chr1 22302617 22303102 -220361251 + L1MC4a LINE L1 5425 5916 -1892 270 0 0 0 chr1 22303120 22303150 -220361203 + (TG)n Simple_repeat Simple_repeat 2 31 0 2216 103 0 0 chr1 22303207 22303507 -220360846 + AluSx SINE Alu 1 300 -12 1640 153 0 4 chr1 22303684 22303938 -220360415 - AluJb SINE Alu -59 253 1 262 192 96 0 chr1 22303944 22304017 -220360336 + MER113 DNA MER1_type? 106 185 -336 250 286 24 0 chr1 22304066 22304150 -220360203 + MER113 DNA MER1_type? 381 466 -55 267 306 83 28 chr1 22304184 22304292 -220360061 + L2 LINE L2 3144 3257 -15 360 316 15 23 chr1 22304899 22305032 -220359321 + MIR3 SINE MIR 10 141 -67 1312 145 4 26 chr1 22305040 22305267 -220359086 + AluJo SINE Alu 12 233 -79 324 257 0 14 chr1 22305267 22305341 -220359012 - LTR28 LTR ERV1 0 1020 948 2583 218 137 33 chr1 22305391 22306206 -220358147 - LTR28 LTR ERV1 -69 951 3 512 117 0 0 chr1 22306207 22306284 -220358069 + AluJo SINE Alu 231 307 -5 1986 143 0 10 chr1 22306371 22306678 -220357675 - AluSx SINE Alu -8 304 1 2453 72 0 0 chr1 22306755 22307061 -220357292 - AluY SINE Alu -5 306 1 182 111 0 0 chr1 22307195 22307222 -220357131 - L2 LINE L2 -23 3290 3264 414 291 35 35 chr1 22307610 22307782 -220356571 + L2 LINE L2 2468 2639 -675 180 330 31 31 chr1 22307932 22308029 -220356324 + L2 LINE L2 2844 2940 -373 224 302 0 0 chr1 22308129 22308192 -220356161 + GA-rich Low_complexity Low_complexity 3 65 0 425 49 0 16 chr1 22308193 22308254 -220356099 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 229 371 57 0 chr1 22308738 22308843 -220355510 + L2 LINE L2 3198 3308 -5 197 271 0 0 chr1 22309326 22309374 -220354979 - L2 LINE L2 -1 3312 3265 531 262 43 0 chr1 22309730 22309871 -220354482 - L2 LINE L2 -797 2517 2371 863 130 15 130 chr1 22309922 22310122 -220354231 + AluJo SINE Alu 83 259 -53 423 248 35 9 chr1 22310353 22310466 -220353887 - MLT1I LTR MaLR -17 392 277 358 289 21 0 chr1 22310542 22310639 -220353714 - L2 LINE L2 0 3272 3174 1776 169 10 0 chr1 22310790 22311085 -220353268 + AluJb SINE Alu 1 298 -14 25 31 0 0 chr1 22311496 22311528 -220352825 + AT_rich Low_complexity Low_complexity 1 32 0 331 167 0 0 chr1 22311528 22311582 -220352771 - FLAM SINE Alu -2 131 78 276 292 9 26 chr1 22311622 22311735 -220352618 + L1ME LINE L1 4842 4952 -1194 1819 158 6 10 chr1 22311739 22312050 -220352303 + AluJb SINE Alu 1 310 -2 673 245 165 14 chr1 22312063 22312185 -220352168 + L1ME LINE L1 5047 5149 -1021 1760 174 3 7 chr1 22312185 22312489 -220351864 + AluJb SINE Alu 1 303 -9 673 245 165 14 chr1 22312489 22312857 -220351496 + L1ME LINE L1 5149 5595 -575 29 0 0 0 chr1 22316788 22316817 -220347536 + GC_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 22316952 22316982 -220347371 + GC_rich Low_complexity Low_complexity 1 30 0 538 288 11 80 chr1 22317266 22317540 -220346813 - MLT1-int LTR MaLR -107 1264 1010 1424 211 59 8 chr1 22317648 22318004 -220346349 - L1ME2 LINE L1 -263 5901 5528 220 229 66 16 chr1 22318977 22319038 -220345315 - MIR3 SINE MIR -7 201 138 589 262 83 38 chr1 22319613 22319899 -220344454 + LTR33 LTR ERVL 8 275 -248 401 395 9 9 chr1 22319937 22320160 -220344193 + HERV16 LTR ERVL 1228 1450 -3546 633 285 45 20 chr1 22320345 22320545 -220343808 + HERV16 LTR ERVL 1799 2003 -3761 351 270 0 0 chr1 22320566 22320640 -220343713 + LTR16B LTR ERVL 1 74 -390 1992 235 61 62 chr1 22321331 22321956 -220342397 - MLT1E3 LTR MaLR 0 624 1 371 387 38 8 chr1 22322094 22322360 -220341993 + L1ME1 LINE L1 182 455 -5941 297 241 36 45 chr1 22322797 22322909 -220341444 + L1ME1 LINE L1 2698 2808 -3407 21 71 0 0 chr1 22323031 22323073 -220341280 + AT_rich Low_complexity Low_complexity 1 42 0 1289 289 27 37 chr1 22323115 22323703 -220340650 + L1ME1 LINE L1 3919 4500 -1715 327 96 0 0 chr1 22323723 22323775 -220340578 + (TG)n Simple_repeat Simple_repeat 2 53 0 219 69 0 0 chr1 22323904 22323933 -220340420 + (TA)n Simple_repeat Simple_repeat 2 30 0 248 176 153 0 chr1 22323935 22324020 -220340333 + L1ME3 LINE L1 1995 2092 -4334 * 2216 268 72 15 chr1 22323998 22324356 -220339997 + L1ME1 LINE L1 5578 5914 -532 5048 72 11 19 chr1 22324356 22325021 -220339332 - PABL_A LTR ERV1 0 660 2 2216 268 72 15 chr1 22325021 22325478 -220338875 + L1ME1 LINE L1 5914 6440 -6 954 262 112 16 chr1 22325497 22325981 -220338372 + L1ME3 LINE L1 4609 5138 -1288 1878 63 0 4 chr1 22326789 22327026 -220337327 - L1PA6 LINE L1 -10 6144 5909 1374 284 97 46 chr1 22327055 22328029 -220336324 + L1ME3 LINE L1 5142 6065 -377 1943 118 38 14 chr1 22328029 22328318 -220336035 - AluSx SINE Alu -16 296 1 1374 284 97 46 chr1 22328318 22328373 -220335980 + L1ME3 LINE L1 6065 6116 -326 2523 170 5 2 chr1 22328373 22328803 -220335550 + MSTB1 LTR MaLR 1 431 -1 1374 284 97 46 chr1 22328803 22329007 -220335346 + L1ME3 LINE L1 6116 6441 -1 243 321 86 1 chr1 22329299 22329445 -220334908 + MIR SINE MIR 34 189 -73 3563 209 38 23 chr1 22330080 22331175 -220333178 + L1MB7 LINE L1 5041 6158 -26 1924 165 10 0 chr1 22331281 22331584 -220332769 + AluJo SINE Alu 1 306 -6 283 269 95 0 chr1 22331722 22331821 -220332532 + MIR SINE MIR 47 153 -67 213 316 96 7 chr1 22331848 22331984 -220332369 + MER5A DNA MER1_type 14 161 -28 248 246 15 15 chr1 22333565 22333630 -220330723 + MIR SINE MIR 82 146 -62 2216 87 7 23 chr1 22335998 22336307 -220328046 + AluSg SINE Alu 1 304 -6 909 86 0 0 chr1 22336307 22336424 -220327929 + AluSg/x SINE Alu 196 312 0 2348 95 0 0 chr1 22336432 22336726 -220327627 + AluSg1 SINE Alu 2 295 -14 2180 257 87 27 chr1 22336726 22337592 -220326761 - MLT-int LTR MaLR -165 1570 597 512 164 17 43 chr1 22337592 22337708 -220326645 - AluJb SINE Alu -10 302 190 4453 210 23 19 chr1 22337836 22338073 -220326280 - L1M4 LINE L1 -1895 4251 4016 1960 122 104 27 chr1 22338073 22338409 -220325944 + THE1B LTR MaLR 1 362 -2 4453 210 23 19 chr1 22338409 22339248 -220325105 - L1M4 LINE L1 -2130 4016 3171 182 235 367 0 chr1 22339249 22339347 -220325006 - MIR SINE MIR -128 134 1 308 296 47 41 chr1 22340339 22340508 -220323845 - MIR SINE MIR -43 219 50 437 281 188 10 chr1 22340791 22340983 -220323370 - MIR SINE MIR -34 228 3 354 222 0 0 chr1 22342429 22342501 -220321852 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 286 43 0 chr1 22343407 22343477 -220320876 + GA-rich Low_complexity Low_complexity 3 75 0 231 188 125 0 chr1 22344885 22344949 -220319404 + HAL1 LINE L1 2281 2352 -155 195 204 0 0 chr1 22345072 22345116 -220319237 + (TA)n Simple_repeat Simple_repeat 2 45 0 291 360 47 14 chr1 22345278 22345553 -220318800 + L1MC/D LINE L1 5490 5772 -387 183 295 116 8 chr1 22345639 22345768 -220318585 - MIR SINE MIR -16 246 104 180 0 0 0 chr1 22345898 22345918 -220318435 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 526 50 50 0 chr1 22346700 22346780 -220317573 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 33 66 0 0 chr1 22346798 22346859 -220317494 + AT_rich Low_complexity Low_complexity 1 61 0 1351 196 24 21 chr1 22346931 22347222 -220317131 + AluJo SINE Alu 14 305 -7 1196 273 81 29 chr1 22347297 22347711 -220316642 - L1 LINE L1 -1443 4703 4259 290 98 20 0 chr1 22347711 22347762 -220316591 + (TG)n Simple_repeat Simple_repeat 2 53 0 1196 273 81 29 chr1 22347762 22347831 -220316522 - L1 LINE L1 -1887 4259 4195 440 298 71 47 chr1 22347828 22348237 -220316116 - L1MCa LINE L1 -4701 1516 1098 * 269 244 101 8 chr1 22348479 22348598 -220315755 - L1MCa LINE L1 -5451 945 816 1600 154 0 19 chr1 22348598 22348864 -220315489 - AluSq SINE Alu -3 310 50 1090 266 28 8 chr1 22349167 22349555 -220314798 + L1M4 LINE L1 4859 5254 -892 365 344 21 10 chr1 22349558 22349750 -220314603 + MLT2D LTR ERVL 1 194 -220 270 189 68 0 chr1 22349775 22349849 -220314504 + MLT2B2 LTR ERVL 367 445 -70 515 321 43 45 chr1 22351470 22351912 -220312441 + L1MC4 LINE L1 7189 7629 -413 248 313 17 9 chr1 22351982 22352097 -220312256 - L1MC4 LINE L1 -467 7575 7460 282 132 0 0 chr1 22353247 22353300 -220311053 + (GA)n Simple_repeat Simple_repeat 1 53 0 2088 109 3 11 chr1 22353695 22353979 -220310374 + AluSx SINE Alu 1 282 -30 475 226 96 27 chr1 22354147 22354293 -220310060 + L1ME2 LINE L1 5988 6143 -21 284 188 43 0 chr1 22354327 22354396 -220309957 + L1MC4 LINE L1 7689 7760 -282 335 253 52 5 chr1 22354396 22354543 -220309810 + MLT2D LTR ERVL 39 194 -220 550 317 43 45 chr1 22356267 22356709 -220307644 + L1MC4 LINE L1 7189 7629 -413 269 304 17 9 chr1 22356780 22356895 -220307458 - L1MC4 LINE L1 -467 7575 7460 282 132 0 0 chr1 22358048 22358101 -220306252 + (GA)n Simple_repeat Simple_repeat 1 53 0 249 151 0 0 chr1 22359591 22359644 -220304709 + GA-rich Low_complexity Low_complexity 1 53 0 345 47 0 0 chr1 22361148 22361191 -220303162 + (CA)n Simple_repeat Simple_repeat 2 44 0 261 0 0 0 chr1 22361190 22361219 -220303134 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 16978 81 2 18 chr1 22363436 22365825 -220298528 + L1P LINE L1 875 3226 -2920 1748 158 0 0 chr1 22366545 22366818 -220297535 + AluSx SINE Alu 38 310 -2 298 232 42 42 chr1 22369953 22370048 -220294305 + L1MB5 LINE L1 6071 6165 -9 372 277 44 13 chr1 22370973 22371132 -220293221 - MIR SINE MIR -3 259 96 892 261 130 25 chr1 22371405 22371840 -220292513 + MLT1E2 LTR MaLR 137 654 0 282 29 0 0 chr1 22371905 22371940 -220292413 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1991 123 7 4 chr1 22372098 22372375 -220291978 + AluSq SINE Alu 9 313 0 244 0 0 0 chr1 22372375 22372402 -220291951 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 326 245 61 55 chr1 22372729 22372892 -220291461 + L1MB8 LINE L1 5990 6153 -25 974 294 79 5 chr1 22372902 22373296 -220291057 + L1MCa LINE L1 21 443 -5983 * 3242 208 56 12 chr1 22373294 22374772 -220289581 + L1MC2 LINE L1 4721 6341 -3 266 191 0 16 chr1 22375238 22375301 -220289052 + GA-rich Low_complexity Low_complexity 4 65 0 250 135 250 67 chr1 22375448 22375503 -220288850 + L1ME3A LINE L1 6037 6081 -89 1833 171 0 0 chr1 22375503 22375802 -220288551 - AluJb SINE Alu -11 301 3 250 135 250 67 chr1 22375802 22375850 -220288503 + L1ME3A LINE L1 6081 6159 -11 21 36 0 0 chr1 22376923 22376951 -220287402 + GC_rich Low_complexity Low_complexity 1 28 0 334 155 0 14 chr1 22377510 22377581 -220286772 + FLAM SINE Alu 63 132 -1 1655 134 0 0 chr1 22377714 22377960 -220286393 - AluSq SINE Alu -5 308 63 925 125 0 0 chr1 22377960 22378096 -220286257 - AluSg/x SINE Alu -40 272 137 395 255 159 13 chr1 22378476 22378633 -220285720 + MIR SINE MIR 76 255 -7 * 538 286 27 32 chr1 22378630 22378815 -220285538 - MIR SINE MIR 0 262 79 2108 103 3 3 chr1 22378816 22379107 -220285246 + AluSx SINE Alu 1 291 -21 2058 98 20 0 chr1 22379111 22379407 -220284946 + AluSp SINE Alu 3 304 -9 1193 80 0 0 chr1 22379407 22379569 -220284784 + AluY SINE Alu 133 294 -17 232 143 95 0 chr1 22379571 22379613 -220284740 - MER3 DNA MER1_type -117 92 47 194 186 23 0 chr1 22380745 22380788 -220283565 + L2 LINE L2 3014 3057 -215 303 261 27 0 chr1 22381322 22381417 -220282936 - MIR SINE MIR -76 132 32 2306 91 0 0 chr1 22381676 22381974 -220282379 - AluSg SINE Alu -12 298 1 282 56 0 0 chr1 22382033 22382069 -220282284 + (GA)n Simple_repeat Simple_repeat 2 37 0 2396 91 0 0 chr1 22382692 22383001 -220281352 + AluSx SINE Alu 1 309 -3 225 321 24 24 chr1 22383047 22383131 -220281222 - MIR3 SINE MIR -11 197 114 291 54 0 0 chr1 22384305 22384342 -220280011 + (TG)n Simple_repeat Simple_repeat 1 37 0 1184 163 64 0 chr1 22384426 22384628 -220279725 - MSTC LTR MaLR 0 428 214 977 161 0 0 chr1 22384628 22384783 -220279570 - FRAM SINE Alu -4 172 18 835 151 157 27 chr1 22384804 22384989 -220279364 - MSTC LTR MaLR -219 209 1 698 228 85 16 chr1 22385655 22385844 -220278509 - MIR SINE MIR -37 225 24 380 230 183 8 chr1 22386287 22386413 -220277940 + MIR SINE MIR 69 216 -46 351 317 92 7 chr1 22386510 22386652 -220277701 + L1ME4a LINE L1 5963 6116 -5 228 319 165 11 chr1 22386759 22386947 -220277406 + MLT1K LTR MaLR 82 298 -290 216 158 0 0 chr1 22386947 22386985 -220277368 + T-rich Low_complexity Low_complexity 1 38 0 314 267 35 79 chr1 22387027 22387142 -220277211 + MLT1K LTR MaLR 370 474 -114 1703 132 0 135 chr1 22387142 22387491 -220276862 - AluJb SINE Alu 0 302 1 314 267 35 79 chr1 22387491 22387577 -220276776 + MLT1K LTR MaLR 474 562 -26 2024 126 3 28 chr1 22388445 22388763 -220275590 + AluSx SINE Alu 1 310 -2 2082 112 26 0 chr1 22388943 22389246 -220275107 + AluSx SINE Alu 1 311 -1 252 59 0 0 chr1 22389414 22389448 -220274905 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 308 257 27 0 chr1 22389472 22389546 -220274807 + L1MB3 LINE L1 5881 5956 -227 204 344 62 47 chr1 22389555 22389683 -220274670 + L2 LINE L2 3139 3268 -4 257 336 82 14 chr1 22389790 22389998 -220274355 + L2 LINE L2 1931 2152 -1162 6972 54 9 16 chr1 22390157 22391631 -220272722 - SVA Other Other -875 1386 3 773 167 0 36 chr1 22391648 22391786 -220272567 - FLAM_A SINE Alu 0 133 1 561 267 56 95 chr1 22392409 22392584 -220271769 + L2 LINE L2 2967 3147 -166 198 71 0 0 chr1 22392584 22392612 -220271741 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2030 90 0 11 chr1 22392620 22392899 -220271454 - AluSc SINE Alu -33 276 1 1913 108 0 44 chr1 22392899 22393220 -220271133 - AluSx SINE Alu 0 308 1 561 267 56 95 chr1 22393220 22393392 -220270961 + L2 LINE L2 3152 3311 -2 235 188 62 0 chr1 22393557 22393605 -220270748 + MIR SINE MIR 114 164 -98 2199 116 3 0 chr1 22394052 22394362 -220269991 - AluSx SINE Alu -1 311 1 870 203 0 0 chr1 22394403 22394561 -220269792 - FRAM SINE Alu -18 158 1 246 254 151 38 chr1 22394630 22394804 -220269549 + MIR3 SINE MIR 8 191 -56 335 294 129 12 chr1 22394937 22395107 -220269246 - MIR3 SINE MIR -3 205 16 2002 138 0 7 chr1 22395412 22395716 -220268637 + AluJb SINE Alu 1 302 -10 409 166 137 68 chr1 22395971 22396176 -220268177 + MER113 DNA MER1_type? 3 221 -300 297 221 128 12 chr1 22396198 22396284 -220268069 + MIR3 SINE MIR 59 154 -54 260 149 43 0 chr1 22396412 22396459 -220267894 + L3 LINE CR1 1421 1469 -108 249 331 139 7 chr1 22396620 22396771 -220267582 - MIR SINE MIR -56 206 36 381 221 29 37 chr1 22397027 22397163 -220267190 + (CAGAGA)n Simple_repeat Simple_repeat 5 139 0 262 146 24 12 chr1 22397399 22397481 -220266872 + G-rich Low_complexity Low_complexity 6 88 0 206 254 16 0 chr1 22397651 22397714 -220266639 + G-rich Low_complexity Low_complexity 1 64 0 281 201 277 55 chr1 22398905 22399035 -220265318 - MIR SINE MIR -47 161 8 372 257 64 28 chr1 22399419 22399528 -220264825 - L2 LINE L2 -5 3308 3196 344 309 79 7 chr1 22399670 22399809 -220264544 + MIR SINE MIR 77 225 -37 262 301 9 35 chr1 22400202 22400315 -220264038 - MIR3 SINE MIR -94 114 5 392 251 161 14 chr1 22400602 22400756 -220263597 + MIR3 SINE MIR 21 194 -35 337 237 161 0 chr1 22400900 22400993 -220263360 + MIR SINE MIR 16 123 -85 258 32 0 0 chr1 22401414 22401445 -220262908 + (TTA)n Simple_repeat Simple_repeat 2 32 0 502 281 51 36 chr1 22401487 22401683 -220262670 - MIR3 SINE MIR -4 204 6 411 189 122 0 chr1 22401797 22401887 -220262466 + MIR SINE MIR 40 140 -68 666 243 103 35 chr1 22402067 22402326 -220262027 + Charlie8 DNA MER1_type 64 1417 -1000 220 224 0 60 chr1 22403179 22403246 -220261107 - MIR3 SINE MIR -36 172 110 550 237 119 0 chr1 22403599 22403717 -220260636 - FLAM_C SINE Alu -10 133 2 2058 112 0 0 chr1 22403756 22404043 -220260310 - AluSx SINE Alu -25 287 1 248 51 0 26 chr1 22404187 22404226 -220260127 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1900 128 0 29 chr1 22404228 22404534 -220259819 - AluJo SINE Alu -15 297 1 449 252 43 0 chr1 22404797 22404912 -220259441 - MIR SINE MIR -31 231 112 1848 157 57 11 chr1 22405217 22405567 -220258786 - MER47A DNA MER2_type 0 366 1 385 267 227 0 chr1 22405567 22405739 -220258614 - MIR SINE MIR -5 257 47 333 187 13 0 chr1 22405999 22406074 -220258279 + MIR SINE MIR 46 121 -141 535 267 106 6 chr1 22406140 22406301 -220258052 - MER117 DNA MER1_type -3 194 18 400 302 219 6 chr1 22406660 22406829 -220257524 - MIR SINE MIR -9 253 49 2031 140 0 0 chr1 22407975 22408275 -220256078 + AluSx SINE Alu 1 300 -12 217 259 19 0 chr1 22408496 22408550 -220255803 + MIR SINE MIR 75 129 -79 1708 146 9 25 chr1 22408575 22408891 -220255462 - AluJo SINE Alu 0 312 2 1944 102 61 0 chr1 22408916 22409209 -220255144 - AluY SINE Alu 0 311 1 339 338 124 0 chr1 22409215 22409360 -220254993 - MIR SINE MIR -53 209 47 195 366 65 0 chr1 22409558 22409651 -220254702 + L2 LINE L2 3194 3292 -21 2070 82 4 0 chr1 22409652 22409922 -220254431 - AluSx SINE Alu -18 294 24 184 294 0 0 chr1 22410232 22410283 -220254070 + L2 LINE L2 3211 3261 -52 327 222 42 0 chr1 22410326 22410398 -220253955 + L2 LINE L2 3239 3313 0 2371 63 0 10 chr1 22410531 22410833 -220253520 - AluY SINE Alu -12 299 1 204 306 14 0 chr1 22410836 22410908 -220253445 - MIR SINE MIR -14 248 176 522 228 38 99 chr1 22411328 22411463 -220252890 - MIR SINE MIR -28 234 115 2005 113 0 41 chr1 22411463 22411782 -220252571 + AluSx SINE Alu 1 306 -6 522 228 38 99 chr1 22411782 22411857 -220252496 - MIR SINE MIR -147 115 37 266 222 44 56 chr1 22412221 22412311 -220252042 - MIR SINE MIR -141 121 33 2427 73 0 0 chr1 22412459 22412762 -220251591 - AluSg SINE Alu -7 303 1 1080 166 6 0 chr1 22412800 22412969 -220251384 + FAM SINE Alu 1 170 -5 332 282 8 34 chr1 22412986 22413103 -220251250 - MIR SINE MIR -137 125 12 231 306 14 0 chr1 22414054 22414126 -220250227 - L2 LINE L2 0 3272 3200 2196 90 0 0 chr1 22414178 22414467 -220249886 + AluSq SINE Alu 14 302 -11 454 125 62 0 chr1 22414600 22414680 -220249673 - AluSg/x SINE Alu -9 303 219 1931 109 0 0 chr1 22414781 22415048 -220249305 - AluSx SINE Alu -45 267 1 255 282 92 44 chr1 22415070 22415364 -220248989 - L1M4 LINE L1 -3161 2985 2678 2269 70 3 0 chr1 22415617 22415939 -220248414 - AluSp SINE Alu 0 323 1 1876 164 3 0 chr1 22416157 22416456 -220247897 - AluSq SINE Alu -13 300 1 1854 139 10 3 chr1 22416618 22416912 -220247441 - AluJb SINE Alu 0 312 17 1218 190 164 23 chr1 22416953 22417216 -220247137 - AluSg SINE Alu 0 300 1 1965 136 3 16 chr1 22417459 22417775 -220246578 - AluJb SINE Alu 0 312 1 1646 139 7 18 chr1 22418478 22418648 -220245705 - AluJo SINE Alu -9 303 136 2202 87 19 16 chr1 22418648 22418958 -220245395 - AluSx SINE Alu -1 311 1 1646 139 7 18 chr1 22418958 22419068 -220245285 - AluJo SINE Alu -176 136 26 2191 111 3 0 chr1 22419885 22420191 -220244162 - AluSx SINE Alu -5 307 1 596 274 36 18 chr1 22420551 22420719 -220243634 + MIR3 SINE MIR 36 206 -2 667 228 18 24 chr1 22420832 22420999 -220243354 + MIR SINE MIR 7 172 -90 247 304 128 10 chr1 22421162 22421264 -220243089 - MIR SINE MIR -72 190 77 2190 115 0 10 chr1 22421341 22421655 -220242698 + AluSq SINE Alu 3 313 0 1606 134 36 0 chr1 22421721 22421974 -220242379 - AluJb SINE Alu -48 264 3 508 304 209 0 chr1 22422581 22422811 -220241542 + L2 LINE L2 3033 3310 -3 1681 169 14 10 chr1 22423034 22423329 -220241024 + AluJo SINE Alu 1 296 -16 386 292 28 26 chr1 22423506 22423677 -220240676 + MIR3 SINE MIR 8 179 -63 387 240 112 27 chr1 22424103 22424295 -220240058 - MLT1K LTR MaLR -7 589 397 438 237 89 30 chr1 22424380 22424515 -220239838 - MLT1K LTR MaLR -444 144 2 2413 76 0 0 chr1 22424593 22424897 -220239456 - AluY SINE Alu -7 304 1 223 292 52 65 chr1 22425386 22425541 -220238812 + MIR SINE MIR 1 153 -72 383 241 271 8 chr1 22425634 22425767 -220238586 + MIR SINE MIR 74 241 -21 210 310 70 54 chr1 22425775 22425904 -220238449 - MIR SINE MIR -5 257 127 205 226 57 0 chr1 22425936 22425989 -220238364 + MIR SINE MIR 81 136 -72 281 298 115 0 chr1 22426558 22426699 -220237654 + MIR SINE MIR 42 206 -56 1121 175 5 0 chr1 22426882 22427088 -220237265 + MIR SINE MIR 56 262 0 218 308 0 0 chr1 22427278 22427343 -220237010 + MIR SINE MIR 56 120 -142 2416 74 0 6 chr1 22427346 22427657 -220236696 - AluY SINE Alu -2 309 1 347 248 156 9 chr1 22428130 22428239 -220236114 + MIR SINE MIR 31 155 -107 394 304 43 0 chr1 22429040 22429155 -220235198 - MIR SINE MIR -142 120 1 251 219 203 0 chr1 22430141 22430205 -220234148 + MIR3 SINE MIR 94 170 -38 2036 97 14 0 chr1 22430261 22430539 -220233814 + AluSx SINE Alu 1 282 -30 1873 142 48 7 chr1 22430571 22430860 -220233493 + AluJo SINE Alu 1 301 -11 198 321 0 0 chr1 22430860 22430913 -220233440 - MER5A DNA MER1_type -56 133 81 1008 111 0 0 chr1 22431163 22431307 -220233046 + AluSp/q SINE Alu 158 301 -12 300 164 45 0 chr1 22431307 22431374 -220232979 - L1ME3 LINE L1 -118 6044 5975 193 299 60 15 chr1 22431783 22431850 -220232503 + MIR SINE MIR 114 183 -79 220 318 57 0 chr1 22431927 22432015 -220232338 - MIR SINE MIR -78 130 38 679 33 11 0 chr1 22432058 22432148 -220232205 + MER57-int LTR ERV1 7057 7147 -390 519 178 16 47 chr1 22432149 22432162 -220232191 + LTR54B LTR ERV1 5 17 -481 1997 124 7 10 chr1 22432162 22432460 -220231893 + AluSx SINE Alu 1 297 -15 519 178 16 47 chr1 22432460 22432575 -220231778 + LTR54B LTR ERV1 17 129 -369 1265 124 58 35 chr1 22432577 22432834 -220231519 + MER57A-int LTR ERV1 7275 7537 0 1564 149 107 104 chr1 22432834 22432980 -220231373 + MER57A LTR ERV1 1 145 -258 2304 109 0 0 chr1 22432980 22433292 -220231061 - AluSx SINE Alu 0 312 1 1564 149 107 104 chr1 22433292 22433503 -220230850 + MER57A LTR ERV1 145 363 -40 1985 104 0 0 chr1 22433503 22433795 -220230558 - AluSc SINE Alu 0 312 21 1564 149 107 104 chr1 22433795 22433837 -220230516 + MER57A LTR ERV1 363 403 0 274 260 31 52 chr1 22434139 22434235 -220230118 + MIR SINE MIR 96 189 -73 180 170 151 0 chr1 22434460 22434513 -220229840 + MIR SINE MIR 111 171 -91 * 195 204 68 0 chr1 22434497 22434541 -220229812 + L2 LINE L2 3246 3292 -21 198 282 0 0 chr1 22434704 22434743 -220229610 + L2 LINE L2 3211 3249 -23 331 258 67 50 chr1 22434752 22434872 -220229481 + L2 LINE L2 3150 3271 -1 186 300 0 20 chr1 22435331 22435381 -220228972 - MIR SINE MIR -56 152 104 207 382 41 16 chr1 22436169 22436292 -220228061 - L2 LINE L2 -50 3222 3097 326 294 0 0 chr1 22436796 22436898 -220227455 - L1M4 LINE L1 -2098 4048 3947 700 282 31 31 chr1 22436903 22437130 -220227223 + L2 LINE L2 2155 2381 -933 2056 127 37 0 chr1 22437165 22437465 -220226888 - AluSx SINE Alu -1 311 1 326 47 0 0 chr1 22437536 22437579 -220226774 - tRNA-Gln-CAG tRNA tRNA -32 43 1 517 276 36 20 chr1 22437581 22437777 -220226576 + L1M4 LINE L1 4415 4613 -1533 409 247 62 45 chr1 22437762 22437940 -220226413 + L1ME1 LINE L1 5940 6120 -46 * 403 243 63 0 chr1 22438007 22438118 -220226235 + MIR SINE MIR 36 153 -55 958 245 141 35 chr1 22438263 22438688 -220225665 - L1ME3A LINE L1 -9 6161 5692 225 318 47 23 chr1 22438701 22438830 -220225523 - L1ME3A LINE L1 -546 5624 5493 352 282 77 83 chr1 22439200 22439356 -220224997 - L1ME4a LINE L1 -3 6118 5964 2426 55 7 0 chr1 22439425 22439734 -220224619 - AluY SINE Alu 0 311 1 23 0 0 0 chr1 22439854 22439877 -220224476 + AT_rich Low_complexity Low_complexity 1 23 0 2325 76 17 0 chr1 22439884 22440185 -220224168 + AluSp SINE Alu 5 310 -3 22 100 0 9 chr1 22440219 22440265 -220224088 + AT_rich Low_complexity Low_complexity 1 46 -63 782 141 0 31 chr1 22440265 22440393 -220223960 - FLAM_A SINE Alu -9 124 1 22 100 0 9 chr1 22440393 22440456 -220223897 + AT_rich Low_complexity Low_complexity 46 109 0 522 184 28 78 chr1 22440702 22440919 -220223434 - L1ME4a LINE L1 -12 6109 5904 248 287 16 39 chr1 22440888 22441017 -220223336 - L1ME4a LINE L1 -1 6120 5995 * 446 174 230 56 chr1 22441193 22441354 -220222999 + MER5A DNA MER1_type 1 189 0 309 274 118 0 chr1 22441483 22441585 -220222768 + L2 LINE L2 3199 3312 -1 341 248 7 95 chr1 22441996 22442136 -220222217 - L1MC4 LINE L1 -1333 6989 1977 22 35 0 0 chr1 22442144 22442173 -220222180 + AT_rich Low_complexity Low_complexity 1 29 0 2432 72 0 0 chr1 22442173 22442477 -220221876 - AluY SINE Alu -6 305 2 1097 32 19 13 chr1 22442477 22442632 -220221721 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 2934 69 7 22 chr1 22442637 22443087 -220221266 - LTR7 LTR ERV1 -7 443 1 2094 100 0 27 chr1 22443088 22443387 -220220966 - AluSx SINE Alu -21 291 1 2376 66 0 10 chr1 22443437 22443742 -220220611 - AluY SINE Alu -9 302 1 1695 170 21 7 chr1 22444028 22444317 -220220036 + AluJo SINE Alu 1 293 -19 2230 108 0 0 chr1 22444326 22444623 -220219730 + AluSx SINE Alu 1 297 -15 338 289 106 56 chr1 22444675 22444855 -220219498 - L1MC4 LINE L1 -5919 497 309 365 326 167 0 chr1 22444861 22444993 -220219360 + MIR SINE MIR 102 255 -7 665 195 17 0 chr1 22445274 22445392 -220218961 - FRAM SINE Alu -46 130 11 674 247 75 34 chr1 22445411 22445736 -220218617 - L1ME3 LINE L1 0 6162 5823 186 365 0 14 chr1 22446579 22446653 -220217700 + MIR SINE MIR 119 191 -71 225 386 80 11 chr1 22447053 22447186 -220217167 - MIR SINE MIR -50 212 63 2099 123 3 3 chr1 22447186 22447487 -220216866 - AluSx SINE Alu -10 302 2 225 386 80 11 chr1 22447487 22447529 -220216824 - MIR SINE MIR -199 63 25 346 229 136 51 chr1 22447972 22448090 -220216263 + MIR SINE MIR 22 149 -113 240 293 13 60 chr1 22448911 22449061 -220215292 - L1ME3A LINE L1 -92 6078 5936 1351 146 130 0 chr1 22449072 22449325 -220215028 - AluJo SINE Alu -26 286 1 2210 108 7 0 chr1 22449335 22449632 -220214721 - AluSx SINE Alu -13 299 1 1251 126 19 0 chr1 22449705 22449919 -220214434 - Tigger1 DNA MER2_type -1 2417 2200 597 210 0 8 chr1 22449915 22450034 -220214319 - Tigger1 DNA MER2_type -2279 139 22 * 184 400 38 0 chr1 22450134 22450239 -220214114 - L2 LINE L2 -38 3234 3126 240 336 35 35 chr1 22450976 22451089 -220213264 + MIR3 SINE MIR 94 206 -2 225 218 77 51 chr1 22451162 22451240 -220213113 + MIR SINE MIR 104 183 -79 588 313 66 29 chr1 22452292 22452535 -220211818 + MIR SINE MIR 9 260 -2 379 324 60 33 chr1 22452961 22453143 -220211210 + MIR SINE MIR 26 212 -50 251 53 0 26 chr1 22453495 22453533 -220210820 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 2141 106 0 22 chr1 22453945 22454256 -220210097 - AluSx SINE Alu -8 304 1 1874 148 0 23 chr1 22454258 22454562 -220209791 - AluJb SINE Alu -15 297 1 368 302 103 0 chr1 22454567 22454683 -220209670 - MIR SINE MIR -120 142 15 468 289 94 20 chr1 22455289 22455490 -220208863 + MIR SINE MIR 47 262 0 241 237 51 0 chr1 22457138 22457197 -220207156 + MIR SINE MIR 110 171 -91 359 338 52 28 chr1 22457595 22457808 -220206545 + L2 LINE L2 2912 3129 -143 203 286 19 20 chr1 22458240 22458347 -220206006 - MIR SINE MIR -62 146 46 696 216 14 0 chr1 22458777 22458925 -220205428 + MIR SINE MIR 4 153 -109 266 130 0 0 chr1 22459000 22459046 -220205307 - MLT1F LTR MaLR 0 567 522 2345 83 0 6 chr1 22459056 22459369 -220204984 + AluY SINE Alu 1 311 0 1985 147 0 10 chr1 22459373 22459679 -220204674 + AluJo SINE Alu 1 303 -9 857 146 104 0 chr1 22459680 22459824 -220204529 + AluJo/FRAM SINE Alu 133 291 -21 1955 152 154 14 chr1 22459824 22460258 -220204095 - MLT1F LTR MaLR -41 501 7 180 289 19 0 chr1 22460451 22460503 -220203850 - MIR SINE MIR -56 152 100 511 255 37 31 chr1 22460654 22460815 -220203538 + MIR SINE MIR 33 194 -68 2338 98 0 9 chr1 22460817 22461132 -220203221 + AluSx SINE Alu 1 312 0 200 297 47 0 chr1 22461859 22461923 -220202430 + MIR SINE MIR 25 91 -171 232 318 119 8 chr1 22462911 22463037 -220201316 + MIR SINE MIR 103 242 -20 909 46 23 0 chr1 22463857 22463988 -220200365 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 528 254 146 5 chr1 22464455 22464640 -220199713 + MIR SINE MIR 36 246 -16 283 272 193 26 chr1 22464838 22464952 -220199401 + MIR SINE MIR 12 144 -118 334 218 178 10 chr1 22466209 22466310 -220198043 + MIR SINE MIR 71 188 -74 1979 132 0 7 chr1 22466315 22466650 -220197703 + AluSx SINE Alu 1 333 0 279 170 89 185 chr1 22466756 22466817 -220197536 - L2 LINE L2 -1 3271 3228 2188 82 51 0 chr1 22466817 22467111 -220197242 + AluSp SINE Alu 1 309 -4 279 170 89 185 chr1 22467111 22467184 -220197169 - L2 LINE L2 -44 3228 3150 502 286 90 33 chr1 22467322 22467567 -220196786 - MIR SINE MIR -1 261 3 1671 195 10 0 chr1 22467806 22468104 -220196249 + AluJo SINE Alu 1 301 -11 2457 60 0 22 chr1 22468107 22468425 -220195928 + AluY SINE Alu 1 311 0 1729 184 7 0 chr1 22468431 22468740 -220195613 + AluJb SINE Alu 2 312 0 312 206 82 0 chr1 22468800 22468859 -220195494 + MER113 DNA MER1_type? 1 72 -449 2399 69 3 0 chr1 22468859 22469162 -220195191 - AluY SINE Alu -7 304 1 312 206 82 0 chr1 22469162 22469199 -220195154 + MER113 DNA MER1_type? 72 105 -416 2464 99 25 8 chr1 22469291 22469653 -220194700 - L1PB1 LINE L1 -2 6149 5782 210 191 0 0 chr1 22469653 22469695 -220194658 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 3513 81 6 10 chr1 22469702 22470189 -220194164 - L1PB1 LINE L1 -360 5791 5303 2522 50 0 0 chr1 22470189 22470488 -220193865 - AluY SINE Alu -12 299 1 3513 81 6 10 chr1 22470488 22470592 -220193761 - L1PB1 LINE L1 -848 5303 5200 1199 274 18 9 chr1 22470609 22470949 -220193404 - LTR16C LTR ERVL 0 491 149 258 347 0 20 chr1 22471054 22471152 -220193201 + MIR SINE MIR 21 116 -92 394 266 13 5 chr1 22471750 22471869 -220192484 - MLT1J2 LTR MaLR -289 161 64 1766 151 17 3 chr1 22472080 22472379 -220191974 + AluJb SINE Alu 1 303 -9 1147 45 0 0 chr1 22472430 22472562 -220191791 + AluY SINE Alu 1 132 -179 1726 92 119 8 chr1 22473149 22473410 -220190943 + AluSg SINE Alu 1 290 -20 196 294 20 0 chr1 22473663 22473714 -220190639 - L2 LINE L2 -28 3285 3234 476 300 29 8 chr1 22473750 22473898 -220190455 - MIR SINE MIR -60 148 16 740 288 30 21 chr1 22474374 22474610 -220189743 - MIR SINE MIR -11 251 14 180 77 0 0 chr1 22474979 22475005 -220189348 + (TGGGGG)n Simple_repeat Simple_repeat 6 31 0 823 278 186 29 chr1 22475809 22476084 -220188269 - L2 LINE L2 -254 3059 2829 2390 74 0 19 chr1 22476084 22476393 -220187960 + AluSg SINE Alu 1 303 -7 823 278 186 29 chr1 22476393 22476875 -220187478 - L2 LINE L2 -484 2829 2183 224 261 98 76 chr1 22476866 22476958 -220187395 - MIR SINE MIR -149 113 20 * 782 178 0 0 chr1 22477109 22477227 -220187126 + AluJo SINE Alu 1 118 -184 696 213 0 0 chr1 22477243 22477370 -220186983 + AluJo SINE Alu 183 309 -3 221 307 0 40 chr1 22477445 22477520 -220186833 - MIR3 SINE MIR -25 183 112 361 299 39 39 chr1 22478913 22479067 -220185286 - MIR SINE MIR -78 184 31 226 283 0 0 chr1 22479119 22479172 -220185181 + (TGAG)n Simple_repeat Simple_repeat 3 55 0 335 186 0 0 chr1 22479753 22479812 -220184541 - L2 LINE L2 -1 3312 3254 1156 123 21 16 chr1 22480060 22480247 -220184106 - MER53 DNA DNA -1 188 1 285 247 20 34 chr1 22480490 22480636 -220183717 + (CAGAGA)n Simple_repeat Simple_repeat 1 144 0 217 379 106 0 chr1 22481182 22481314 -220183039 - MIR SINE MIR -7 255 110 496 325 91 17 chr1 22482081 22482312 -220182041 - MIR SINE MIR -14 248 1 727 300 22 22 chr1 22483439 22483669 -220180684 - MIR SINE MIR -13 249 20 332 234 234 8 chr1 22484404 22484532 -220179821 - MIR3 SINE MIR -32 176 20 255 313 221 0 chr1 22486772 22486903 -220177450 - L2 LINE L2 0 3272 3113 * 351 331 16 0 chr1 22486902 22487023 -220177330 + L2 LINE L2 3150 3272 0 517 260 107 60 chr1 22487050 22487406 -220176947 - L2 LINE L2 -173 3099 2725 332 276 82 8 chr1 22487837 22487971 -220176382 + L2 LINE L2 2657 2800 -514 543 272 169 14 chr1 22487989 22488202 -220176151 - MIR SINE MIR -1 261 16 425 323 85 40 chr1 22488514 22488664 -220175689 + L2 LINE L2 2620 2785 -529 2379 64 3 0 chr1 22488664 22488959 -220175394 + AluY SINE Alu 1 296 -15 425 323 85 40 chr1 22488959 22489031 -220175322 + L2 LINE L2 2785 2852 -462 1060 184 6 0 chr1 22489080 22489254 -220175099 - FAM SINE Alu 0 175 1 202 289 132 16 chr1 22489337 22489458 -220174895 + L2 LINE L2 3008 3142 -171 286 222 0 0 chr1 22490118 22490181 -220174172 - MIR SINE MIR -153 109 47 434 289 34 27 chr1 22490262 22490411 -220173942 - MIR SINE MIR -54 208 59 440 280 8 8 chr1 22490556 22490674 -220173679 + MIR SINE MIR 20 137 -125 251 246 9 0 chr1 22491998 22492108 -220172245 + GA-rich Low_complexity Low_complexity 2 112 0 213 270 14 14 chr1 22492125 22492199 -220172154 + GA-rich Low_complexity Low_complexity 3 76 0 313 341 6 39 chr1 22492311 22492546 -220171807 + GA-rich Low_complexity Low_complexity 1 227 0 195 296 0 0 chr1 22492791 22492835 -220171518 + L2 LINE L2 3250 3293 -20 312 102 0 0 chr1 22492835 22492884 -220171469 + (TGGA)n Simple_repeat Simple_repeat 2 50 0 945 180 0 0 chr1 22492906 22493151 -220171202 + (TGGG)n Simple_repeat Simple_repeat 1 245 0 255 286 0 0 chr1 22494488 22494551 -220169802 + MIR SINE MIR 53 115 -93 229 260 0 0 chr1 22494700 22494750 -220169603 + CT-rich Low_complexity Low_complexity 2 51 0 345 242 289 0 chr1 22495390 22495539 -220168814 - MIR SINE MIR -67 195 4 727 158 0 36 chr1 22498503 22498642 -220165711 + L1PB3 LINE L1 6021 6154 0 344 254 88 18 chr1 22498671 22498785 -220165568 - MIR3 SINE MIR -72 136 15 326 264 171 7 chr1 22499029 22499169 -220165184 + L2 LINE L2 2896 3058 -214 293 304 98 0 chr1 22499227 22499329 -220165024 - MIR SINE MIR 0 262 151 590 355 50 16 chr1 22500216 22500458 -220163895 - MIR SINE MIR -12 250 1 325 223 78 29 chr1 22500565 22500668 -220163685 + MIR3 SINE MIR 71 178 -30 472 284 196 5 chr1 22500988 22501182 -220163171 + MIR SINE MIR 22 252 -10 313 336 130 0 chr1 22501865 22501996 -220162357 + MIR3 SINE MIR 25 172 -36 413 278 32 8 chr1 22502269 22502395 -220161958 + MIR SINE MIR 16 144 -118 2143 121 0 0 chr1 22503456 22503753 -220160600 - AluSx SINE Alu -15 297 1 185 239 22 0 chr1 22503845 22503891 -220160462 - L2 LINE L2 -2 3270 3224 510 17 0 0 chr1 22504198 22504257 -220160096 + (CA)n Simple_repeat Simple_repeat 2 60 0 333 253 94 18 chr1 22504292 22504447 -220159906 + MIR SINE MIR 34 198 -64 * 542 239 268 34 chr1 22504436 22504645 -220159708 - MIR SINE MIR -3 259 2 382 288 45 0 chr1 22504795 22504906 -220159447 + L2 LINE L2 3176 3291 -22 * 919 264 56 20 chr1 22504904 22505154 -220159199 - MIR SINE MIR -2 260 2 456 241 28 0 chr1 22506284 22506392 -220157961 - MER5A DNA MER1_type -60 129 19 210 341 12 0 chr1 22506895 22506977 -220157376 + L2 LINE L2 3159 3241 -31 311 261 0 11 chr1 22507462 22507550 -220156803 + GA-rich Low_complexity Low_complexity 1 87 0 32 0 0 0 chr1 22510477 22510509 -220153844 + GC_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr1 22510534 22510564 -220153789 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 22510625 22510653 -220153700 + GC_rich Low_complexity Low_complexity 1 28 0 210 91 0 0 chr1 22510659 22510692 -220153661 + (CGGGG)n Simple_repeat Simple_repeat 1 33 0 33 0 0 0 chr1 22510704 22510737 -220153616 + GC_rich Low_complexity Low_complexity 1 33 0 419 316 167 0 chr1 22510919 22511087 -220153266 - MIR SINE MIR -14 248 53 363 235 219 8 chr1 22511284 22511403 -220152950 + MIR3 SINE MIR 40 183 -25 299 241 46 0 chr1 22512410 22512497 -220151856 - MIR3 SINE MIR -25 183 93 294 296 56 32 chr1 22512598 22512723 -220151630 + MIR3 SINE MIR 45 172 -36 254 220 198 11 chr1 22512908 22512999 -220151354 - MIR SINE MIR -59 149 42 317 298 32 0 chr1 22513306 22513400 -220150953 + MIR SINE MIR 46 142 -120 808 275 47 0 chr1 22513517 22513750 -220150603 + MIR SINE MIR 19 262 0 361 296 45 30 chr1 22513786 22513918 -220150435 + L2 LINE L2 3137 3270 -2 * 388 329 14 41 chr1 22513911 22514057 -220150296 - MIR SINE MIR -1 261 120 222 326 107 21 chr1 22514895 22515105 -220149248 - MIR SINE MIR -4 258 9 2265 103 3 3 chr1 22515460 22515772 -220148581 - AluSp SINE Alu -1 312 1 284 234 0 0 chr1 22515991 22516055 -220148298 + MIR SINE MIR 65 128 -134 183 42 0 0 chr1 22516162 22516186 -220148167 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1815 112 0 103 chr1 22516328 22516494 -220147859 + AluSx SINE Alu 1 118 -194 2318 80 0 10 chr1 22516494 22516796 -220147557 + AluSc SINE Alu 1 299 -10 1815 112 0 103 chr1 22516796 22516959 -220147394 + AluSx SINE Alu 118 296 -16 207 100 0 0 chr1 22516959 22516989 -220147364 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 403 265 176 24 chr1 22517029 22517199 -220147154 - MIR SINE MIR -14 248 53 428 324 69 6 chr1 22517781 22517954 -220146399 - MIR SINE MIR -62 200 17 560 184 281 11 chr1 22518089 22518274 -220146079 - MIR SINE MIR -21 241 7 1830 132 43 13 chr1 22518311 22518614 -220145739 - AluJo SINE Alu 0 312 1 1468 176 30 43 chr1 22518614 22518915 -220145438 - AluJo SINE Alu -15 297 1 2349 99 0 0 chr1 22519460 22519773 -220144580 + AluSq SINE Alu 1 313 0 440 216 30 52 chr1 22519800 22519934 -220144419 - MIR3 SINE MIR -67 141 11 211 273 93 27 chr1 22520070 22520194 -220144159 - MIR SINE MIR -62 146 10 319 319 38 59 chr1 22520390 22520628 -220143725 - MIR SINE MIR 0 262 30 1517 201 4 4 chr1 22520676 22520955 -220143398 + AluJo SINE Alu 3 281 -31 269 179 71 18 chr1 22521104 22521160 -220143193 + MIR SINE MIR 124 182 -80 401 227 38 45 chr1 22522441 22522573 -220141780 - MIR SINE MIR -71 191 61 208 283 76 76 chr1 22523019 22523164 -220141189 - MIR SINE MIR -35 227 83 301 265 10 31 chr1 22523458 22523556 -220140797 - L2 LINE L2 -2 3270 3175 279 314 29 10 chr1 22523829 22523931 -220140422 + MIR SINE MIR 42 145 -63 577 251 24 48 chr1 22524049 22524216 -220140137 + MIR SINE MIR 87 249 -13 877 188 85 1 chr1 22524231 22524425 -220139928 + MIR SINE MIR 6 213 -37 182 36 0 36 chr1 22524454 22524482 -220139871 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 2353 103 0 0 chr1 22524581 22524891 -220139462 + AluSp SINE Alu 1 310 -3 213 121 0 0 chr1 22524894 22524927 -220139426 + (GGA)n Simple_repeat Simple_repeat 3 35 0 336 48 0 0 chr1 22524930 22524972 -220139381 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 204 240 40 0 chr1 22525093 22525143 -220139210 + L3 LINE CR1 1514 1565 -12 1933 139 9 25 chr1 22525143 22525460 -220138893 - AluJb SINE Alu 0 312 1 636 283 105 19 chr1 22525531 22525856 -220138497 + L1MC4a LINE L1 5600 5954 -167 1792 161 6 50 chr1 22525859 22526182 -220138171 + AluJb SINE Alu 1 309 -3 2226 123 3 0 chr1 22526182 22526492 -220137861 + AluSx SINE Alu 1 311 -1 368 367 54 0 chr1 22526596 22526743 -220137610 + L1ME4a LINE L1 5966 6120 -1 364 356 87 5 chr1 22526761 22526980 -220137373 - MIR SINE MIR -19 243 7 632 280 28 6 chr1 22527430 22527612 -220136741 + MIR SINE MIR 21 206 -56 333 302 45 49 chr1 22527945 22528210 -220136143 + L2 LINE L2 2712 2975 -339 1935 137 0 41 chr1 22528913 22529227 -220135126 - AluSx SINE Alu -11 301 1 672 300 152 10 chr1 22529349 22529659 -220134694 + L2 LINE L2 2919 3272 0 396 245 59 20 chr1 22529704 22529806 -220134547 - MIR SINE MIR -123 139 34 246 322 11 11 chr1 22529819 22529906 -220134447 - MIR3 SINE MIR -36 172 86 255 331 136 0 chr1 22529978 22530147 -220134206 - MIR SINE MIR -52 210 19 658 263 108 33 chr1 22530322 22530535 -220133818 - MIR SINE MIR -3 259 31 354 332 46 63 chr1 22530796 22530882 -220133471 + L2 LINE L2 2908 2994 -278 360 0 0 0 chr1 22530882 22530922 -220133431 + (CA)n Simple_repeat Simple_repeat 2 41 0 354 332 46 63 chr1 22530922 22531202 -220133151 + L2 LINE L2 2994 3268 -4 2432 78 3 0 chr1 22531284 22531593 -220132760 + AluSg SINE Alu 1 310 0 317 255 34 47 chr1 22531774 22531890 -220132463 - MIR SINE MIR -75 133 39 524 271 40 0 chr1 22532189 22532340 -220132013 + L2 LINE L2 2909 3065 -248 745 322 70 4 chr1 22532348 22532590 -220131763 + MIR SINE MIR 5 262 0 2305 89 0 13 chr1 22532624 22532937 -220131416 + AluSg1 SINE Alu 1 309 0 270 167 37 0 chr1 22533010 22533064 -220131289 - MIR SINE MIR -116 146 91 360 345 0 17 chr1 22533067 22533183 -220131170 + L2 LINE L2 3200 3313 0 1130 143 0 0 chr1 22533340 22533515 -220130838 + AluJb SINE Alu 137 311 -1 648 273 34 46 chr1 22533957 22534195 -220130158 + MIR SINE MIR 16 250 -12 280 324 165 0 chr1 22534404 22534574 -220129779 + MIR SINE MIR 48 245 -17 1646 146 0 11 chr1 22535224 22535484 -220128869 + AluSx SINE Alu 40 296 -16 306 251 40 10 chr1 22535612 22535722 -220128631 - MIR SINE MIR -82 126 15 380 317 32 8 chr1 22536178 22536301 -220128052 - MIR SINE MIR -62 146 21 649 280 123 0 chr1 22536417 22536628 -220127725 + MIR SINE MIR 24 260 -2 497 261 138 0 chr1 22537405 22537593 -220126760 - MIR SINE MIR -21 241 28 180 176 0 0 chr1 22539419 22539453 -220124900 + (CA)n Simple_repeat Simple_repeat 1 34 0 228 246 15 0 chr1 22539548 22539613 -220124740 + (CA)n Simple_repeat Simple_repeat 1 66 0 24 32 0 0 chr1 22539745 22539776 -220124577 + GC_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr1 22539832 22539863 -220124490 + GC_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr1 22539910 22539931 -220124422 + (CCCCCG)n Simple_repeat Simple_repeat 3 23 0 22 35 0 0 chr1 22540007 22540036 -220124317 + GC_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chr1 22540077 22540136 -220124217 + GC_rich Low_complexity Low_complexity 1 59 0 494 296 25 0 chr1 22540265 22540425 -220123928 + MIR SINE MIR 94 257 -5 338 61 20 0 chr1 22541548 22541597 -220122756 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 234 91 0 0 chr1 22541615 22541648 -220122705 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 237 65 0 0 chr1 22542063 22542094 -220122259 + (TGGGGG)n Simple_repeat Simple_repeat 3 33 0 716 239 5 70 chr1 22542306 22542519 -220121834 + MIR SINE MIR 51 249 -13 1902 172 3 0 chr1 22542531 22542839 -220121514 + AluJb SINE Alu 1 309 -3 2144 132 3 0 chr1 22542839 22543150 -220121203 + AluSx SINE Alu 1 312 0 348 317 32 0 chr1 22543240 22543363 -220120990 + L1MC4a LINE L1 5736 5862 -1946 192 297 47 0 chr1 22543397 22543461 -220120892 + MIR SINE MIR 47 113 -149 274 260 48 29 chr1 22543988 22544092 -220120261 + MIR SINE MIR 36 141 -67 2167 97 40 0 chr1 22544131 22544429 -220119924 + AluSg SINE Alu 1 310 0 203 280 20 0 chr1 22544922 22544972 -220119381 - MIR SINE MIR -16 246 196 * 340 208 26 13 chr1 22544952 22545029 -220119324 - L2 LINE L2 -22 3291 3214 209 341 87 0 chr1 22545691 22545817 -220118536 + MIR3 SINE MIR 12 148 -60 298 274 142 0 chr1 22545919 22546032 -220118321 + MER20B DNA MER1_type 1 129 -654 345 291 97 8 chr1 22546070 22546204 -220118149 + MER20B DNA MER1_type 194 339 -444 2099 115 23 13 chr1 22546267 22546571 -220117782 + AluSx SINE Alu 1 307 -5 756 171 8 0 chr1 22546581 22546698 -220117655 + FLAM_C SINE Alu 1 118 -25 21 0 0 0 chr1 22546703 22546724 -220117629 + AT_rich Low_complexity Low_complexity 1 21 0 1942 72 133 0 chr1 22546923 22547186 -220117167 - AluSp SINE Alu -5 298 1 457 271 100 7 chr1 22547758 22547898 -220116455 - MIR SINE MIR -21 241 89 389 362 78 12 chr1 22548256 22548329 -220116024 + MIR SINE MIR 2 69 -193 2027 119 7 0 chr1 22548329 22548615 -220115738 - AluSx SINE Alu -24 288 1 389 362 78 12 chr1 22548615 22548784 -220115569 + MIR SINE MIR 69 260 -2 2074 125 0 10 chr1 22548952 22549249 -220115104 + AluSx SINE Alu 5 298 -14 762 212 92 42 chr1 22549480 22549697 -220114656 + MIR SINE MIR 23 250 -12 307 310 228 7 chr1 22549729 22549874 -220114479 + MIR3 SINE MIR 17 193 -15 271 326 33 0 chr1 22550151 22550243 -220114110 + MIR SINE MIR 79 173 -89 341 121 0 35 chr1 22550320 22550378 -220113975 + MIR3 SINE MIR 132 187 -21 521 248 273 15 chr1 22550719 22550917 -220113436 + MIR SINE MIR 2 250 -12 386 320 49 0 chr1 22551963 22552113 -220112240 - MIR SINE MIR -58 150 35 223 309 63 32 chr1 22552217 22552343 -220112010 - MIR SINE MIR -57 151 22 189 161 0 0 chr1 22552581 22552612 -220111741 - L2 LINE L2 -18 3254 3224 329 257 55 50 chr1 22552893 22553053 -220111300 - MIR SINE MIR -62 146 12 558 352 45 0 chr1 22553054 22553253 -220111100 - MIR SINE MIR -20 242 35 252 163 23 0 chr1 22553311 22553354 -220110999 + MIR SINE MIR 93 136 -72 254 348 22 0 chr1 22553373 22553465 -220110888 + L2 LINE L2 3171 3264 -8 262 235 62 0 chr1 22553974 22554055 -220110298 - MIR SINE MIR -135 127 42 385 292 59 0 chr1 22555675 22555817 -220108536 + MIR SINE MIR 32 147 -61 34 55 0 0 chr1 22557415 22557470 -220106883 + GC_rich Low_complexity Low_complexity 1 55 0 535 241 11 0 chr1 22557478 22557618 -220106735 - MIR SINE MIR -61 147 22 232 204 19 0 chr1 22558027 22558081 -220106272 - MIR SINE MIR -84 124 70 193 224 121 17 chr1 22558967 22559025 -220105328 - MER5A DNA MER1_type -75 114 51 223 224 66 53 chr1 22560939 22561015 -220103338 - L2 LINE L2 -46 3226 3150 220 321 49 0 chr1 22561401 22561482 -220102871 - MIR SINE MIR -56 152 68 2112 106 0 47 chr1 22562095 22562229 -220102124 + AluSx SINE Alu 1 140 -172 2140 89 55 0 chr1 22562229 22562520 -220101833 + AluSc SINE Alu 2 308 -1 2112 106 0 47 chr1 22562520 22562707 -220101646 + AluSx SINE Alu 140 307 -5 301 345 76 67 chr1 22563469 22563692 -220100661 - MIR SINE MIR -21 241 17 249 159 0 0 chr1 22564007 22564051 -220100302 + (TG)n Simple_repeat Simple_repeat 2 45 0 1198 138 61 0 chr1 22564159 22564355 -220099998 - AluJo SINE Alu -20 292 85 200 296 74 25 chr1 22565241 22565322 -220099031 - MER5A DNA MER1_type -80 109 25 2134 97 21 0 chr1 22567686 22567975 -220096378 - AluSq SINE Alu -18 295 1 251 239 0 42 chr1 22568987 22569058 -220095295 - HAL1 LINE L1 0 2507 2440 285 267 61 23 chr1 22569124 22569240 -220095113 - HAL1 LINE L1 -72 2435 2312 2134 125 0 0 chr1 22569240 22569543 -220094810 - AluSx SINE Alu -9 303 1 285 267 61 23 chr1 22569543 22569557 -220094796 - HAL1 LINE L1 -195 2312 2300 609 325 126 12 chr1 22569765 22570251 -220094102 - HAL1 LINE L1 -444 2063 1523 344 319 60 92 chr1 22570267 22570576 -220093777 - HAL1 LINE L1 -1347 1160 793 2020 131 7 0 chr1 22570576 22570873 -220093480 + AluSg SINE Alu 1 299 -11 344 319 60 92 chr1 22570873 22570927 -220093426 - HAL1 LINE L1 -1714 793 739 1658 150 61 10 chr1 22570960 22571253 -220093100 + AluSx SINE Alu 1 308 -4 5223 170 56 35 chr1 22571258 22571364 -220092989 - L1MA4 LINE L1 -17 6283 6181 1470 169 4 11 chr1 22571364 22571625 -220092728 - AluJo SINE Alu -10 302 44 5223 170 56 35 chr1 22571625 22573302 -220091051 - L1MA4 LINE L1 -119 6181 4542 1959 126 44 7 chr1 22573302 22573596 -220090757 - AluSx SINE Alu -7 305 1 5223 170 56 35 chr1 22573596 22573669 -220090684 - L1MA4 LINE L1 -1758 4542 4472 251 162 0 0 chr1 22573669 22573706 -220090647 - tRNA-Val-GTT tRNA tRNA -39 37 1 5223 170 56 35 chr1 22573706 22573816 -220090537 - L1MA4 LINE L1 -1828 4472 4366 1679 167 36 0 chr1 22573816 22574097 -220090256 + AluSx SINE Alu 1 291 -21 5223 170 56 35 chr1 22574097 22574517 -220089836 - L1MA4 LINE L1 -1934 4366 3791 354 245 5 98 chr1 22574778 22574982 -220089371 - HAL1 LINE L1 -2131 376 192 279 91 0 0 chr1 22576208 22576252 -220088101 + FLAM_A SINE Alu 90 133 0 1938 164 3 19 chr1 22577903 22578220 -220086133 - AluJo SINE Alu 0 312 1 2245 114 3 3 chr1 22578424 22578730 -220085623 + AluSp SINE Alu 1 306 -7 1984 149 0 3 chr1 22578747 22579035 -220085318 + AluSx SINE Alu 5 291 -21 222 338 0 0 chr1 22580002 22580070 -220084283 - L2 LINE L2 -15 3298 3231 2484 77 0 6 chr1 22581682 22581993 -220082360 + AluSg1 SINE Alu 1 309 0 1304 129 55 0 chr1 22582897 22583099 -220081254 + AluJo SINE Alu 70 282 -30 318 264 33 66 chr1 22583298 22583510 -220080843 + L1MC5 LINE L1 7235 7439 -522 2171 114 7 3 chr1 22583548 22583856 -220080497 + AluSp SINE Alu 1 309 -4 2609 74 0 0 chr1 22584773 22585083 -220079270 + AluY SINE Alu 1 310 -1 1608 85 0 5 chr1 22586086 22586298 -220078055 + AluY SINE Alu 83 293 -18 363 301 56 48 chr1 22587073 22587283 -220077070 + MIR3 SINE MIR 9 217 -45 1869 148 3 7 chr1 22587357 22587655 -220076698 + AluSp SINE Alu 1 297 -16 1620 197 3 0 chr1 22588187 22588492 -220075861 - AluSx SINE Alu -1 311 6 1355 229 10 7 chr1 22588501 22588803 -220075550 - AluJb SINE Alu -7 305 3 296 223 102 102 chr1 22589313 22589519 -220074834 + L1ME3A LINE L1 5965 6170 0 199 248 143 0 chr1 22589556 22589661 -220074692 - L2 LINE L2 -2495 819 700 349 248 113 7 chr1 22589675 22589816 -220074537 + Charlie4 DNA MER1_type 105 260 -1701 1125 189 42 4 chr1 22589836 22590074 -220074279 + AluSx SINE Alu 1 247 -65 958 193 0 0 chr1 22591607 22591778 -220072575 + AluSg/x SINE Alu 139 309 -3 492 161 85 34 chr1 22592873 22592991 -220071362 - MER53 DNA DNA -65 124 1 291 109 0 0 chr1 22593252 22593298 -220071055 + L2 LINE L2 3267 3312 -1 279 275 192 0 chr1 22594467 22594587 -220069766 + MIR SINE MIR 53 195 -67 201 267 0 0 chr1 22595228 22595273 -220069080 + GA-rich Low_complexity Low_complexity 1 45 0 378 217 29 51 chr1 22596011 22596149 -220068204 + MIR SINE MIR 11 144 -67 1993 140 0 3 chr1 22596172 22596486 -220067867 - AluSq SINE Alu 0 313 1 2109 113 27 3 chr1 22597554 22597846 -220066507 + AluSg SINE Alu 1 299 -11 2238 119 0 6 chr1 22597846 22598158 -220066195 + AluSg SINE Alu 1 310 0 540 310 43 17 chr1 22599182 22599482 -220064871 + L2 LINE L2 2537 2844 -470 259 311 133 7 chr1 22599496 22599647 -220064706 + MER3 DNA MER1_type 40 209 0 * 892 170 101 37 chr1 22599647 22599701 -220064652 - MER3 DNA MER1_type -143 66 1 370 321 111 55 chr1 22599702 22600082 -220064271 + L2 LINE L2 2872 3272 0 1409 208 49 14 chr1 22600500 22600784 -220063569 - AluJo SINE Alu -18 294 1 483 252 57 46 chr1 22601291 22601472 -220062881 + L1ME3A LINE L1 5767 5948 -222 336 272 10 19 chr1 22601708 22601811 -220062542 + GA-rich Low_complexity Low_complexity 4 105 0 191 211 0 0 chr1 22604600 22604638 -220059715 - MIR SINE MIR -178 84 47 1632 180 11 7 chr1 22604644 22604972 -220059381 + AluSx SINE Alu 1 329 0 2027 130 7 0 chr1 22604981 22605265 -220059088 + AluSg SINE Alu 1 286 -24 252 0 0 0 chr1 22605268 22605296 -220059057 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 35 0 0 0 chr1 22605322 22605357 -220058996 + AT_rich Low_complexity Low_complexity 1 35 0 2327 105 0 10 chr1 22605364 22605677 -220058676 + AluSg SINE Alu 1 310 0 588 110 12 0 chr1 22605691 22605773 -220058580 - FRAM SINE Alu -31 145 63 1358 161 104 8 chr1 22605873 22606122 -220058231 - AluJo SINE Alu -39 273 1 268 279 23 0 chr1 22606396 22606482 -220057871 + L1MC/D LINE L1 5772 5859 -1949 25 75 0 0 chr1 22606890 22606943 -220057410 + AT_rich Low_complexity Low_complexity 1 53 0 1406 173 102 19 chr1 22607751 22608017 -220056336 - AluJo SINE Alu -19 293 6 759 304 129 41 chr1 22608017 22608681 -220055672 + HAL1 LINE L1 78 800 -1707 411 216 34 91 chr1 22608900 22609017 -220055336 + MIR SINE MIR 85 190 -72 2042 154 0 0 chr1 22609017 22609323 -220055030 + AluSx SINE Alu 5 310 -2 411 216 34 91 chr1 22609323 22609381 -220054972 + MIR SINE MIR 190 250 -12 2240 114 3 0 chr1 22609565 22609864 -220054489 - AluSx SINE Alu -12 300 1 273 230 0 0 chr1 22609963 22610037 -220054316 + CT-rich Low_complexity Low_complexity 1 74 0 1643 188 0 23 chr1 22610037 22610346 -220054007 - AluJb SINE Alu -10 302 1 1378 197 47 11 chr1 22611218 22611497 -220052856 - AluJo SINE Alu -21 291 3 650 193 0 4 chr1 22611799 22611971 -220052382 + AluJo SINE Alu 2 235 -77 3642 166 63 19 chr1 22612826 22613526 -220050827 - MER44D DNA MER2_type -1 604 2 2238 68 43 0 chr1 22613683 22613962 -220050391 + AluY SINE Alu 1 291 -20 1806 163 0 3 chr1 22614057 22614339 -220050014 + AluJb SINE Alu 1 281 -31 236 91 23 0 chr1 22614342 22614386 -220049967 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1693 135 77 0 chr1 22614613 22614898 -220049455 + AluSg SINE Alu 2 306 0 247 256 48 56 chr1 22614967 22615092 -220049261 + L1ME LINE L1 5568 5691 -430 1990 100 4 0 chr1 22615495 22615755 -220048598 - AluSg SINE Alu -12 298 38 2039 96 12 78 chr1 22615921 22616255 -220048098 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 22616369 22616392 -220047961 + AT_rich Low_complexity Low_complexity 1 23 0 807 146 0 29 chr1 22616404 22616541 -220047812 + FLAM_C SINE Alu 1 133 0 1861 99 80 56 chr1 22616545 22616847 -220047506 + AluSq SINE Alu 1 309 -4 2058 136 0 19 chr1 22617447 22617763 -220046590 - AluSx SINE Alu 0 312 3 637 170 121 21 chr1 22617770 22617911 -220046442 - FRAM SINE Alu -11 155 1 1621 188 0 0 chr1 22619226 22619492 -220044861 + AluJo SINE Alu 37 302 -10 1914 151 34 0 chr1 22619496 22619787 -220044566 + AluJb SINE Alu 1 301 -11 2122 115 20 3 chr1 22620170 22620465 -220043888 + AluSx SINE Alu 1 300 -12 516 249 61 56 chr1 22622132 22622329 -220042024 + MIR SINE MIR 20 217 -45 2208 108 0 3 chr1 22622403 22622700 -220041653 + AluSp SINE Alu 1 296 -17 2300 107 0 0 chr1 22625940 22626239 -220038114 + AluSg1 SINE Alu 4 302 -7 1768 158 30 7 chr1 22627093 22627380 -220036973 + AluSx SINE Alu 1 297 -15 186 43 0 0 chr1 22627380 22627403 -220036950 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1320 128 59 0 chr1 22627435 22627638 -220036715 + AluSg/x SINE Alu 89 303 -9 2276 110 7 0 chr1 22627693 22627993 -220036360 - AluSc SINE Alu -7 302 1 2018 134 3 3 chr1 22628200 22628499 -220035854 - AluSx SINE Alu -13 299 1 1428 137 92 92 chr1 22628629 22628964 -220035389 + L1MA7 LINE L1 5934 6271 -20 2267 114 7 0 chr1 22628964 22629270 -220035083 - AluSq SINE Alu -5 308 1 1428 137 92 92 chr1 22629270 22629291 -220035062 + L1MA7 LINE L1 6270 6290 -1 256 295 74 42 chr1 22629612 22629707 -220034646 + L2 LINE L2 3176 3273 -40 929 184 94 25 chr1 22629802 22629849 -220034504 + AluJo SINE Alu 85 127 -185 2171 117 0 7 chr1 22629849 22630149 -220034204 + AluSq SINE Alu 1 298 -15 2319 88 0 0 chr1 22630149 22630456 -220033897 + AluSq SINE Alu 1 307 0 929 184 94 25 chr1 22630456 22630607 -220033746 + AluJo SINE Alu 126 299 -13 343 198 125 0 chr1 22631209 22631305 -220033048 - L1MA9 LINE L1 0 6312 6205 23 0 0 0 chr1 22632087 22632110 -220032243 + AT_rich Low_complexity Low_complexity 1 23 0 874 207 29 29 chr1 22632226 22632400 -220031953 - AluJ SINE Alu -21 291 118 1808 153 0 55 chr1 22632421 22632589 -220031764 - AluSx SINE Alu -22 290 145 1957 135 32 26 chr1 22632589 22632900 -220031453 - AluSq SINE Alu 0 313 1 1808 153 0 55 chr1 22632900 22633038 -220031315 - AluSx SINE Alu -167 145 1 814 154 8 8 chr1 22633064 22633187 -220031166 - AluJ SINE Alu -187 125 3 24 53 0 0 chr1 22633201 22633239 -220031114 + AT_rich Low_complexity Low_complexity 1 38 0 1624 189 6 22 chr1 22634073 22634390 -220029963 - AluJo SINE Alu 0 312 1 979 182 6 0 chr1 22634555 22634720 -220029633 + AluJb SINE Alu 140 305 -7 2351 95 0 3 chr1 22635077 22635373 -220028980 - AluSx SINE Alu -17 295 1 870 224 53 33 chr1 22635533 22636047 -220028306 - Charlie2 DNA MER1_type -37 2825 2217 437 242 91 42 chr1 22636048 22636213 -220028140 - Charlie2 DNA MER1_type -2624 238 66 1718 128 0 4 chr1 22636215 22636457 -220027896 - AluSx SINE Alu -17 295 55 1965 115 49 0 chr1 22636622 22636908 -220027445 - AluSx SINE Alu -12 300 1 453 124 57 48 chr1 22637084 22637189 -220027164 + AluSp/q SINE Alu 205 310 -3 2403 144 60 70 chr1 22637189 22637562 -220026791 - L1MA7 LINE L1 -14 6277 5909 2161 98 7 3 chr1 22637562 22637858 -220026495 - AluSp SINE Alu -16 297 1 2403 144 60 70 chr1 22637858 22637998 -220026355 - L1MA7 LINE L1 -382 5909 5769 619 272 110 35 chr1 22638319 22638746 -220025607 + L1MEd LINE L1 742 1200 -4919 348 25 0 0 chr1 22638786 22638826 -220025527 + U7 snRNA snRNA 1 40 -23 235 290 100 50 chr1 22638866 22639166 -220025187 + HAL1 LINE L1 1372 1686 -821 1565 184 18 7 chr1 22639341 22639624 -220024729 + AluJo SINE Alu 1 286 -26 2336 108 0 13 chr1 22639904 22640220 -220024133 + AluSx SINE Alu 1 312 0 260 53 26 0 chr1 22640224 22640262 -220024091 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr1 22640653 22640676 -220023677 + AT_rich Low_complexity Low_complexity 1 23 0 216 342 54 18 chr1 22641094 22641205 -220023148 - L2 LINE L2 -2125 1189 1075 344 228 97 97 chr1 22641284 22641490 -220022863 + L1ME3A LINE L1 5965 6170 0 216 250 144 0 chr1 22641528 22641632 -220022721 - L2 LINE L2 -2496 818 700 361 248 113 7 chr1 22641646 22641787 -220022566 + Charlie4 DNA MER1_type 105 260 -1701 2179 125 10 10 chr1 22641807 22642119 -220022234 + AluSx SINE Alu 1 312 0 2403 93 3 3 chr1 22642142 22642454 -220021899 + AluSq SINE Alu 1 312 -1 264 59 0 0 chr1 22642931 22642965 -220021388 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 1145 142 205 35 chr1 22642985 22643239 -220021114 + AluJb SINE Alu 11 307 -5 1286 143 219 8 chr1 22643870 22644107 -220020246 + AluSx SINE Alu 1 287 -15 2541 72 0 0 chr1 22645219 22645525 -220018828 - AluSq SINE Alu -7 306 1 2017 147 3 0 chr1 22646281 22646581 -220017772 + AluSx SINE Alu 1 301 -11 234 171 0 0 chr1 22646775 22646816 -220017537 - Alu SINE Alu -64 102 62 1744 236 242 44 chr1 22646871 22647248 -220017105 + L2 LINE L2 2005 2306 -1007 1693 205 0 0 chr1 22647248 22647555 -220016798 - AluJo SINE Alu -5 307 1 1744 236 242 44 chr1 22647555 22648243 -220016110 + L2 LINE L2 2306 3301 -12 2324 91 0 29 chr1 22648243 22648551 -220015802 + AluSp SINE Alu 1 299 -14 2178 101 3 0 chr1 22649413 22649699 -220014654 + AluSg SINE Alu 24 310 0 686 149 9 9 chr1 22649747 22649854 -220014499 - L1PB4 LINE L1 -13 6143 6037 21 0 0 0 chr1 22650535 22650556 -220013797 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 22650610 22650634 -220013719 + AT_rich Low_complexity Low_complexity 1 24 0 1540 151 92 11 chr1 22650922 22651194 -220013159 + AluSx SINE Alu 1 294 -18 2151 125 10 0 chr1 22651197 22651501 -220012852 + AluSx SINE Alu 1 307 -5 2183 123 0 0 chr1 22651533 22651833 -220012520 + AluSg SINE Alu 1 300 -10 1023 235 208 86 chr1 22652137 22652810 -220011543 + LTR41 LTR ERVL 7 761 -12 1781 163 33 3 chr1 22652931 22653231 -220011122 + AluJb SINE Alu 1 309 -3 276 206 16 16 chr1 22653231 22653286 -220011067 + LTR41 LTR ERVL 714 771 -2 805 180 8 0 chr1 22653403 22653531 -220010822 + FLAM_C SINE Alu 2 130 -13 2267 81 11 0 chr1 22653536 22653846 -220010507 + AluSp SINE Alu 1 313 0 2009 127 19 13 chr1 22653851 22654158 -220010195 + AluSx SINE Alu 1 309 -3 25 31 0 0 chr1 22654841 22654873 -220009480 + AT_rich Low_complexity Low_complexity 1 32 0 24 67 0 0 chr1 22654913 22654958 -220009395 + AT_rich Low_complexity Low_complexity 1 45 0 231 36 0 0 chr1 22655250 22655278 -220009075 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 553 228 44 0 chr1 22655482 22655618 -220008735 + L1MC4a LINE L1 5407 5548 -2260 1975 210 106 90 chr1 22655622 22655838 -220008515 + L1MC4a LINE L1 5587 5798 -2010 351 0 0 0 chr1 22655838 22655877 -220008476 + (CA)n Simple_repeat Simple_repeat 2 40 0 1975 210 106 90 chr1 22655877 22656134 -220008219 + L1MC4a LINE L1 5798 6049 -1759 1943 117 44 0 chr1 22656134 22656408 -220007945 + AluSg SINE Alu 1 286 -24 342 0 0 0 chr1 22656408 22656446 -220007907 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1975 210 106 90 chr1 22656446 22656542 -220007811 + L1MC4a LINE L1 6049 6142 -1666 2194 108 0 32 chr1 22656542 22656858 -220007495 + AluSx SINE Alu 1 306 -6 1975 210 106 90 chr1 22656858 22657109 -220007244 + L1MC4a LINE L1 6142 6423 -1385 3217 192 135 12 chr1 22657110 22657947 -220006406 + L1MC4 LINE L1 6774 7713 -329 2153 92 9 19 chr1 22658086 22658402 -220005951 + AluSq SINE Alu 1 313 0 2236 94 10 7 chr1 22658465 22658772 -220005581 + AluSp SINE Alu 1 308 -5 864 163 137 26 chr1 22658947 22659137 -220005216 - AluJo SINE Alu -16 296 86 950 185 5 54 chr1 22659261 22659445 -220004908 + FAM SINE Alu 1 175 0 2027 133 3 16 chr1 22659636 22659945 -220004408 + AluSx SINE Alu 1 305 -7 2592 59 0 0 chr1 22660238 22660541 -220003812 + AluSg SINE Alu 1 303 -7 2179 113 0 3 chr1 22661184 22661475 -220002878 + AluSp SINE Alu 1 290 -23 243 88 0 0 chr1 22661475 22661509 -220002844 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 1927 159 0 3 chr1 22661810 22662106 -220002247 + AluSx SINE Alu 3 297 -15 1878 102 0 23 chr1 22662118 22662383 -220001970 + AluSg1 SINE Alu 40 298 -11 1164 224 75 8 chr1 22662383 22662651 -220001702 - MER21B LTR ERV1 -566 297 12 2145 106 7 3 chr1 22662986 22663278 -220001075 + AluSx SINE Alu 1 293 -19 866 157 16 94 chr1 22663392 22663583 -220000770 + AluSg/x SINE Alu 135 310 0 1599 166 11 19 chr1 22663738 22664009 -220000344 + AluSx SINE Alu 1 269 -43 1694 139 47 0 chr1 22665723 22665997 -219998356 - AluSx SINE Alu -25 287 1 2136 89 3 64 chr1 22666008 22666321 -219998032 - AluSp SINE Alu -16 297 4 32 0 0 0 chr1 22666368 22666400 -219997953 + AT_rich Low_complexity Low_complexity 1 32 0 1466 149 0 105 chr1 22666552 22666875 -219997478 + AluJb SINE Alu 1 289 -23 2306 117 0 0 chr1 22667046 22667354 -219996999 - AluSx SINE Alu -4 308 1 1825 146 0 71 chr1 22667646 22667832 -219996521 - AluJb SINE Alu -12 300 145 2193 98 3 7 chr1 22667832 22668128 -219996225 - AluY SINE Alu -16 295 1 1825 146 0 71 chr1 22668128 22668264 -219996089 - AluJb SINE Alu -167 145 1 2259 112 0 0 chr1 22668304 22668600 -219995753 - AluSx SINE Alu -16 296 1 2339 113 0 0 chr1 22668658 22668969 -219995384 - AluSq SINE Alu -2 311 1 2163 108 0 20 chr1 22669217 22669523 -219994830 - AluSx SINE Alu -12 300 1 1862 150 3 35 chr1 22669800 22669973 -219994380 - AluJb SINE Alu -9 303 143 2436 83 0 0 chr1 22669973 22670273 -219994080 - AluY SINE Alu -9 302 3 1862 150 3 35 chr1 22670273 22670412 -219993941 - AluJb SINE Alu -169 143 1 243 0 0 0 chr1 22670639 22670666 -219993687 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1986 122 0 0 chr1 22670668 22670938 -219993415 - AluSq SINE Alu -43 270 1 2407 96 0 0 chr1 22671251 22671552 -219992801 - AluSx SINE Alu -11 301 1 815 172 16 0 chr1 22671552 22671674 -219992679 - AluJb SINE Alu -187 125 2 2057 112 3 11 chr1 22671953 22672240 -219992113 + AluSx SINE Alu 19 303 -9 207 279 33 33 chr1 22672313 22672374 -219991979 + MIR SINE MIR 25 85 -177 183 253 13 67 chr1 22672471 22672546 -219991807 + L2 LINE L2 2911 2981 -291 * 468 272 68 27 chr1 22672514 22672661 -219991692 + MIR SINE MIR 44 196 -66 1929 150 0 7 chr1 22672670 22672957 -219991396 + AluJb SINE Alu 3 287 -25 1473 111 14 24 chr1 22672969 22673176 -219991177 + AluSg/x SINE Alu 90 294 -18 2402 83 7 3 chr1 22673301 22673601 -219990752 + AluSx SINE Alu 1 301 -11 259 235 127 77 chr1 22673642 22673902 -219990451 - L1ME3 LINE L1 -84 6078 5806 850 137 0 8 chr1 22673906 22674030 -219990323 - FLAM_C SINE Alu -8 135 13 422 210 22 22 chr1 22674043 22674181 -219990172 - L1ME3 LINE L1 -351 5811 5674 820 231 6 23 chr1 22674184 22674357 -219989996 - AluJb SINE Alu -11 301 132 2001 134 14 0 chr1 22674372 22674662 -219989691 + AluSx SINE Alu 1 294 -18 483 96 0 130 chr1 22674665 22674780 -219989573 - L1PA14 LINE L1 -134 6027 5928 346 306 22 22 chr1 22674780 22674914 -219989439 - L1ME3 LINE L1 -1052 5094 4961 741 273 14 19 chr1 22675078 22675287 -219989066 + AluJo SINE Alu 97 304 -8 2371 92 0 0 chr1 22675863 22676157 -219988196 - AluY SINE Alu -17 294 1 269 100 0 0 chr1 22676402 22676442 -219987911 + FLAM SINE Alu 93 132 -1 2290 88 0 29 chr1 22676459 22676767 -219987586 + AluSg SINE Alu 1 299 -11 787 212 20 0 chr1 22676798 22676944 -219987409 + AluJb SINE Alu 64 212 -100 764 115 0 64 chr1 22676988 22677144 -219987209 - AluSg/x SINE Alu 0 310 165 747 137 58 0 chr1 22677259 22677398 -219986955 - L1MB8 LINE L1 -216 5962 5816 3445 193 51 19 chr1 22677412 22678392 -219985961 - L1MB5 LINE L1 -16 6158 5260 2252 100 3 6 chr1 22678392 22678703 -219985650 - AluSx SINE Alu -2 310 1 1229 182 55 33 chr1 22678711 22678886 -219985467 - AluJo SINE Alu -8 304 119 1943 89 28 98 chr1 22678886 22679212 -219985141 + AluYb8 SINE Alu 2 304 -14 1229 182 55 33 chr1 22679212 22679311 -219985042 - AluJo SINE Alu -193 119 24 710 191 8 8 chr1 22679346 22679477 -219984876 - FLAM_A SINE Alu 0 133 3 1332 185 53 59 chr1 22679477 22679795 -219984558 - L1M4 LINE L1 -579 5605 5281 2290 93 0 53 chr1 22679795 22680117 -219984236 - AluSg SINE Alu -5 305 1 1332 185 53 59 chr1 22680117 22680262 -219984091 - L1M4 LINE L1 -903 5281 5137 1488 208 14 14 chr1 22680294 22680573 -219983780 - AluJo SINE Alu -29 283 5 1311 162 3 125 chr1 22680667 22680994 -219983359 - AluJo SINE Alu -14 288 2 2361 82 24 0 chr1 22680997 22681291 -219983062 - AluSq SINE Alu -12 301 1 255 61 0 0 chr1 22681337 22681370 -219982983 + (T)n Simple_repeat Simple_repeat 1 33 0 737 170 0 0 chr1 22681396 22681508 -219982845 - FLAM_C SINE Alu -18 125 14 442 289 23 29 chr1 22681805 22681978 -219982375 - L1MC/D LINE L1 -2162 5646 5475 827 188 0 0 chr1 22682068 22682201 -219982152 - FLAM_A SINE Alu 0 133 1 1860 145 35 11 chr1 22682408 22682691 -219981662 + AluSx SINE Alu 1 290 -22 860 189 0 0 chr1 22682724 22682867 -219981486 + AluJb SINE Alu 157 299 -13 1937 125 14 4 chr1 22682926 22683253 -219981100 - AluSx SINE Alu 0 330 1 2300 113 0 0 chr1 22683254 22683556 -219980797 - AluSc SINE Alu -7 302 1 1604 145 0 126 chr1 22683738 22684107 -219980246 - AluSx SINE Alu 0 328 1 368 299 76 0 chr1 22684110 22684294 -219980059 - L1MC/D LINE L1 -2028 5780 5583 738 169 22 0 chr1 22684441 22684577 -219979776 - FLAM_C SINE Alu 0 143 5 2216 115 10 0 chr1 22684679 22684984 -219979369 - AluSg SINE Alu -2 308 1 2220 126 0 16 chr1 22685005 22685322 -219979031 - AluSx SINE Alu 0 312 1 2470 68 0 0 chr1 22685325 22685620 -219978733 - AluY SINE Alu -16 295 1 477 277 107 94 chr1 22685686 22686016 -219978337 - L1MC/D LINE L1 -984 5162 4823 2229 120 7 0 chr1 22686016 22686324 -219978029 - AluSp SINE Alu -3 310 1 477 277 107 94 chr1 22686324 22686459 -219977894 - L1MC/D LINE L1 -1323 4823 4691 91 19 0 0 chr1 22686470 22686575 -219977778 + AT_rich Low_complexity Low_complexity 1 105 0 2234 106 0 0 chr1 22686575 22686867 -219977486 - AluSg SINE Alu -17 293 2 971 245 176 7 chr1 22686870 22687249 -219977104 + L2 LINE L2 2771 3207 -106 867 216 22 17 chr1 22687263 22687444 -219976909 - AluJo SINE Alu -13 299 118 445 220 110 28 chr1 22687520 22687629 -219976724 - MIR SINE MIR -74 188 71 330 296 28 80 chr1 22687626 22687802 -219976551 + MIR SINE MIR 83 249 -13 * 862 224 0 0 chr1 22687810 22687999 -219976354 + AluSg/x SINE Alu 137 312 0 2424 87 0 0 chr1 22688106 22688405 -219975948 - AluSg1 SINE Alu -10 299 1 483 153 0 0 chr1 22688405 22688477 -219975876 - AluS SINE Alu -17 293 222 393 277 54 23 chr1 22688565 22688695 -219975658 + L2 LINE L2 2925 3058 -214 204 118 29 0 chr1 22688733 22688767 -219975586 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1401 176 49 104 chr1 22688805 22688887 -219975466 - MER69 DNA AcHobo -11 2515 2430 2334 119 0 0 chr1 22688887 22689189 -219975164 + AluSx SINE Alu 1 302 -10 1401 176 49 104 chr1 22689189 22689332 -219975021 - MER69 DNA AcHobo -96 2430 2281 809 178 0 22 chr1 22689332 22689467 -219974886 - FLAM_C SINE Alu -1 132 1 1401 176 49 104 chr1 22689467 22689535 -219974818 - MER69 DNA AcHobo -245 2281 2211 1964 161 0 16 chr1 22689535 22689840 -219974513 - AluJo SINE Alu -10 302 3 2168 119 0 7 chr1 22689849 22690151 -219974202 - AluSg SINE Alu -10 300 1 1401 176 49 104 chr1 22690151 22690231 -219974122 - MER69 DNA AcHobo -323 2203 2120 2521 78 0 0 chr1 22690231 22690540 -219973813 - AluY SINE Alu -2 309 1 1401 176 49 104 chr1 22690540 22690681 -219973672 - MER69 DNA AcHobo -406 2120 2017 1167 251 138 5 chr1 22690685 22691075 -219973278 - MER69 DNA AcHobo -658 568 127 2048 121 10 7 chr1 22691077 22691367 -219972986 - AluSx SINE Alu 0 312 22 2280 102 0 37 chr1 22691410 22691734 -219972619 - AluSx SINE Alu 0 312 1 1059 138 0 0 chr1 22691734 22691879 -219972474 - AluSq/x SINE Alu -168 145 1 269 245 0 64 chr1 22691906 22691972 -219972381 - MER4D LTR ERV1 -70 802 733 720 128 13 77 chr1 22691972 22692016 -219972337 - L1MB2 LINE L1 -7 6164 6119 1436 142 32 91 chr1 22692016 22692232 -219972121 - AluJo SINE Alu -21 291 97 1866 77 85 8 chr1 22692232 22692492 -219971861 - AluSx SINE Alu -12 300 21 1436 142 32 91 chr1 22692492 22692584 -219971769 - AluJo SINE Alu -215 97 1 720 128 13 77 chr1 22692584 22692695 -219971658 - L1MB2 LINE L1 -52 6119 6019 269 245 0 64 chr1 22692695 22692722 -219971631 - MER4D LTR ERV1 -139 733 715 325 77 0 0 chr1 22692731 22692783 -219971570 + Alu SINE Alu 1 52 -250 604 113 0 62 chr1 22692885 22692982 -219971371 - AluSg/x SINE Alu -132 180 90 1929 150 0 7 chr1 22692994 22693281 -219971072 - AluJb SINE Alu -25 287 3 468 272 68 27 chr1 22693290 22693437 -219970916 - MIR SINE MIR -66 196 44 183 253 13 67 chr1 22693405 22693480 -219970873 - L2 LINE L2 -291 2981 2911 * 207 279 33 33 chr1 22693577 22693638 -219970715 - MIR SINE MIR -177 85 25 2057 112 3 11 chr1 22693711 22693998 -219970355 - AluSx SINE Alu -9 303 19 789 172 16 0 chr1 22694277 22694399 -219969954 + AluJb SINE Alu 2 125 -187 2008 86 4 0 chr1 22694399 22694654 -219969699 + AluSx SINE Alu 1 256 -56 361 178 0 27 chr1 22694654 22694727 -219969626 - MER41C LTR ERV1 -483 71 1 187 370 63 0 chr1 22694728 22694855 -219969498 - L2 LINE L2 -1207 2107 1973 2446 101 0 0 chr1 22694856 22695162 -219969191 - AluSx SINE Alu -6 306 1 198 0 0 0 chr1 22695222 22695244 -219969109 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2194 112 0 0 chr1 22695258 22695544 -219968809 - AluSg SINE Alu -24 286 1 1706 193 24 3 chr1 22695544 22695840 -219968513 - AluJb SINE Alu -10 302 1 813 157 7 189 chr1 22695842 22696059 -219968294 - AluJb SINE Alu -20 292 136 2504 73 0 0 chr1 22696059 22696360 -219967993 - AluY SINE Alu 0 311 11 813 157 7 189 chr1 22696360 22696422 -219967931 - AluJb SINE Alu -176 136 64 1260 137 0 0 chr1 22696508 22696683 -219967670 + AluSg/x SINE Alu 133 307 -5 1883 145 3 48 chr1 22696695 22697006 -219967347 + AluJb SINE Alu 1 297 -15 962 170 0 55 chr1 22697011 22697236 -219967117 - MER33 DNA MER1_type -244 80 1 451 281 186 0 chr1 22697240 22697461 -219966892 + L2 LINE L2 1812 2073 -1241 364 206 59 81 chr1 22697465 22697601 -219966752 - LTR27 LTR ERV1 -2 634 502 2315 172 121 28 chr1 22697648 22697923 -219966430 - LTR28 LTR ERV1 -443 577 329 2335 110 0 0 chr1 22697923 22698224 -219966129 + AluSg SINE Alu 1 301 -9 2315 172 121 28 chr1 22698224 22698476 -219965877 - LTR28 LTR ERV1 -691 329 1 1953 141 39 0 chr1 22698589 22698873 -219965480 - AluSx SINE Alu -17 295 1 257 236 18 0 chr1 22698873 22698928 -219965425 + MER91 DNA MER1_type 135 190 0 1245 213 29 0 chr1 22699545 22699785 -219964568 + MIR SINE MIR 6 252 -10 250 192 55 27 chr1 22699812 22699885 -219964468 + MER113 DNA MER1_type? 38 112 -409 2352 69 0 0 chr1 22699905 22700207 -219964146 + AluSg SINE Alu 3 304 0 2190 88 0 69 chr1 22700457 22700776 -219963577 + AluSp SINE Alu 1 297 -16 1744 139 47 0 chr1 22700787 22701061 -219963292 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr1 22702430 22702453 -219961900 + GC_rich Low_complexity Low_complexity 1 23 0 2256 91 3 0 chr1 22703415 22703713 -219960640 + AluSp SINE Alu 1 299 -14 237 348 72 14 chr1 22703829 22703967 -219960386 - L2 LINE L2 -221 3051 2906 2366 61 7 7 chr1 22704030 22704387 -219959966 + AluY SINE Alu 2 358 0 2308 90 0 10 chr1 22704484 22704783 -219959570 - AluSq SINE Alu -17 296 1 2436 80 3 57 chr1 22704783 22705070 -219959283 - MER41B LTR ERV1 -270 365 103 1991 123 14 0 chr1 22705070 22705354 -219958999 + AluSg SINE Alu 1 288 -22 2436 80 3 57 chr1 22705354 22705452 -219958901 - MER41B LTR ERV1 -532 103 1 2092 131 7 0 chr1 22705730 22706028 -219958325 + AluJb SINE Alu 1 300 -12 2571 242 87 38 chr1 22706028 22706532 -219957821 + L2 LINE L2 1658 2136 -1178 4359 47 30 39 chr1 22706532 22706578 -219957775 - LTR10C LTR ERV1 0 591 546 2424 82 0 3 chr1 22706578 22706881 -219957472 + AluSc SINE Alu 1 302 -7 4359 47 30 39 chr1 22706881 22707120 -219957233 - LTR10C LTR ERV1 -45 546 307 2414 79 7 13 chr1 22707120 22707425 -219956928 + AluSp SINE Alu 1 303 -10 4359 47 30 39 chr1 22707425 22707654 -219956699 - LTR10C LTR ERV1 -284 307 79 2112 93 25 4 chr1 22707654 22707933 -219956420 - AluSp SINE Alu -26 287 3 4359 47 30 39 chr1 22707933 22708012 -219956341 - LTR10C LTR ERV1 -512 79 1 2571 242 87 38 chr1 22708012 22708348 -219956005 + L2 LINE L2 2136 2543 -771 292 73 24 0 chr1 22708396 22708437 -219955916 - AluJo SINE Alu -147 155 114 1711 117 0 43 chr1 22708444 22708701 -219955652 + AluSx SINE Alu 57 302 -10 229 188 58 101 chr1 22708712 22708781 -219955572 + L2 LINE L2 2570 2635 -679 3098 129 7 66 chr1 22708781 22708811 -219955542 + MER4B LTR ERV1 1 31 -579 2365 87 0 10 chr1 22708811 22709111 -219955242 + AluSq SINE Alu 1 297 -16 3098 129 7 66 chr1 22709111 22709690 -219954663 + MER4B LTR ERV1 31 574 -36 325 191 330 17 chr1 22709720 22709835 -219954518 + L2 LINE L2 2631 2781 -533 1006 172 5 61 chr1 22709835 22710033 -219954320 + AluJo SINE Alu 1 187 -125 2463 99 0 0 chr1 22710094 22710398 -219953955 + AluSq SINE Alu 1 304 -9 2483 87 3 0 chr1 22710398 22710710 -219953643 + AluSq SINE Alu 1 313 0 2924 158 39 58 chr1 22710710 22711245 -219953108 - MER41B LTR ERV1 -37 598 74 2048 94 0 4 chr1 22711245 22711501 -219952852 + AluY SINE Alu 1 255 -56 2924 158 39 58 chr1 22711501 22711574 -219952779 - MER41B LTR ERV1 -561 74 1 187 370 63 0 chr1 22711575 22711702 -219952651 - L2 LINE L2 -1207 2107 1973 2446 101 0 0 chr1 22711703 22712009 -219952344 - AluSx SINE Alu -6 306 1 1554 116 91 8 chr1 22712115 22712356 -219951997 - AluSx SINE Alu -31 281 21 583 176 11 0 chr1 22712356 22712447 -219951906 - AluJ/FLAM SINE Alu -219 93 2 664 119 9 0 chr1 22712450 22712559 -219951794 - L1MB2 LINE L1 -43 6128 6019 2046 85 4 4 chr1 22712595 22712855 -219951498 + AluSx SINE Alu 1 260 -52 644 100 0 0 chr1 22712855 22712945 -219951408 + AluSg/x SINE Alu 217 306 -6 2448 93 0 0 chr1 22712945 22713256 -219951097 + AluY SINE Alu 1 311 0 277 214 0 18 chr1 22713273 22713329 -219951024 - MER69 DNA AcHobo -1164 62 8 1699 112 142 0 chr1 22713482 22713742 -219950611 - AluSx SINE Alu -15 297 1 349 252 20 102 chr1 22713912 22713965 -219950388 - MIR SINE MIR -26 236 180 2376 102 0 10 chr1 22713965 22714270 -219950083 - AluSg SINE Alu -8 302 1 349 252 20 102 chr1 22714270 22714363 -219949990 - MIR SINE MIR -82 180 102 229 329 27 0 chr1 22714443 22714516 -219949837 - MIR3 SINE MIR -51 157 83 * 797 281 124 39 chr1 22714515 22714903 -219949450 - L2 LINE L2 0 3313 2893 380 315 56 39 chr1 22715757 22715935 -219948418 + MIR SINE MIR 65 245 -17 2422 84 0 0 chr1 22715939 22716238 -219948115 + AluSc SINE Alu 1 299 -10 233 254 75 0 chr1 22716456 22716523 -219947830 - MIR SINE MIR -22 240 169 469 207 57 33 chr1 22716523 22716772 -219947581 - MLT1L LTR MaLR 0 615 309 2236 82 10 3 chr1 22716801 22717094 -219947259 - AluSx SINE Alu -17 295 1 674 267 42 2 chr1 22717143 22717330 -219947023 - MIR SINE MIR -42 166 5 26 0 0 0 chr1 22717587 22717613 -219946740 + GC_rich Low_complexity Low_complexity 1 26 0 295 264 24 8 chr1 22718017 22718142 -219946211 + (CA)n Simple_repeat Simple_repeat 1 127 0 752 164 23 0 chr1 22718422 22718550 -219945803 + FLAM_C SINE Alu 3 133 0 32 0 0 0 chr1 22718550 22718582 -219945771 + AT_rich Low_complexity Low_complexity 1 32 0 365 307 61 0 chr1 22718582 22718696 -219945657 + MIR SINE MIR 136 256 -6 510 182 30 10 chr1 22719369 22719468 -219944885 - MIR3 SINE MIR -48 160 60 991 251 191 25 chr1 22719649 22720199 -219944154 + L2 LINE L2 2019 2659 -655 1670 156 13 53 chr1 22720236 22720537 -219943816 - AluJb SINE Alu 0 312 24 1555 132 75 233 chr1 22720537 22720779 -219943574 - L1MC3 LINE L1 -10 7775 7496 180 0 0 0 chr1 22720779 22720799 -219943554 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2169 109 0 14 chr1 22720805 22721098 -219943255 - AluSx SINE Alu -23 289 1 1164 67 0 0 chr1 22721098 22721233 -219943120 - AluSp SINE Alu -178 135 1 1555 132 75 233 chr1 22721233 22721634 -219942719 - L1MC3 LINE L1 -292 7493 7114 421 261 71 78 chr1 22721641 22721924 -219942429 + L2 LINE L2 2696 2976 -338 2220 83 10 0 chr1 22722013 22722302 -219942051 + AluSp SINE Alu 1 292 -21 425 17 33 0 chr1 22722348 22722408 -219941945 + MSTA LTR MaLR 321 382 -46 37 69 0 0 chr1 22722408 22722480 -219941873 + AT_rich Low_complexity Low_complexity 1 72 0 914 183 33 64 chr1 22722481 22722672 -219941681 + L1MB3 LINE L1 5918 6101 -82 3041 101 31 0 chr1 22722672 22723086 -219941267 - MSTA LTR MaLR -1 427 1 914 183 33 64 chr1 22723086 22723166 -219941187 + L1MB3 LINE L1 6101 6182 -1 2397 44 40 0 chr1 22723176 22723473 -219940880 + AluYa5 SINE Alu 2 310 -1 504 278 73 16 chr1 22723503 22723694 -219940659 + L2 LINE L2 3111 3312 -1 416 196 83 83 chr1 22723703 22723836 -219940517 + MIR SINE MIR 111 243 -19 2003 120 3 0 chr1 22723837 22724120 -219940233 + AluJb SINE Alu 1 284 -28 333 277 216 0 chr1 22724167 22724315 -219940038 + MIR SINE MIR 21 200 -62 390 236 165 16 chr1 22724916 22725043 -219939310 + MIR SINE MIR 29 174 -88 24 32 0 0 chr1 22726150 22726181 -219938172 + AT_rich Low_complexity Low_complexity 1 31 0 1219 214 79 6 chr1 22727846 22728187 -219936166 + Charlie4a DNA MER1_type 28 393 -115 189 0 0 0 chr1 22728196 22728217 -219936136 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 444 224 47 9 chr1 22728240 22728347 -219936006 - MER81 DNA DNA -2 112 2 192 293 43 112 chr1 22728575 22728691 -219935662 - MIR SINE MIR -3 259 152 2185 116 10 0 chr1 22728701 22729004 -219935349 - AluSx SINE Alu -6 306 1 1607 186 49 0 chr1 22729004 22729289 -219935064 - AluJo SINE Alu -13 299 1 909 127 0 8 chr1 22729291 22729425 -219934928 - AluJo/FLAM SINE Alu -179 133 1 2203 88 3 14 chr1 22729435 22729730 -219934623 - AluSp SINE Alu -21 292 1 241 204 0 0 chr1 22729796 22729814 -219934539 + Alu SINE Alu 118 135 -168 288 70 23 0 chr1 22729814 22729857 -219934496 + Alu SINE Alu 1 44 -258 2018 110 4 0 chr1 22729857 22730138 -219934215 + AluSx SINE Alu 10 291 -21 723 208 73 62 chr1 22730138 22730330 -219934023 - MIR SINE MIR -62 200 7 353 252 49 16 chr1 22730552 22730675 -219933678 - MIR3 SINE MIR -70 138 12 410 283 110 6 chr1 22731504 22731683 -219932670 - MIR SINE MIR -18 244 47 222 306 36 27 chr1 22732100 22732211 -219932142 - MIR SINE MIR -56 152 41 2297 90 0 10 chr1 22733322 22733632 -219930721 + AluSq SINE Alu 1 307 -6 307 282 122 50 chr1 22734976 22735157 -219929196 + L2 LINE L2 3106 3299 -14 243 79 0 0 chr1 22735157 22735195 -219929158 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 226 314 12 12 chr1 22735840 22735926 -219928427 + GA-rich Low_complexity Low_complexity 5 90 0 414 280 113 36 chr1 22736903 22737071 -219927282 - MIR SINE MIR -67 195 15 270 226 24 36 chr1 22737956 22738040 -219926313 + (CTCA)n Simple_repeat Simple_repeat 4 86 0 668 195 0 0 chr1 22738082 22738195 -219926158 - FAM SINE Alu -71 114 2 2341 95 0 0 chr1 22738610 22738915 -219925438 + AluSx SINE Alu 1 305 -7 264 294 1 60 chr1 22739056 22739148 -219925205 - MIR SINE MIR -111 97 10 358 277 155 14 chr1 22739166 22739233 -219925120 - MIR SINE MIR -8 254 198 2213 98 3 3 chr1 22739233 22739528 -219924825 - AluSq SINE Alu -16 297 3 358 277 155 14 chr1 22739528 22739608 -219924745 - MIR SINE MIR -64 198 86 2106 68 14 37 chr1 22740199 22740495 -219923858 - AluSx SINE Alu -23 289 1 723 245 64 60 chr1 22740635 22740760 -219923593 - MIR SINE MIR -12 250 127 2260 109 0 0 chr1 22740760 22741072 -219923281 + AluSx SINE Alu 1 312 0 723 245 64 60 chr1 22741072 22741195 -219923158 - MIR SINE MIR -135 127 1 1671 133 4 12 chr1 22743029 22743213 -219921140 - AluSx SINE Alu 0 318 135 2081 107 17 3 chr1 22743213 22743513 -219920840 - AluY SINE Alu -7 304 1 1671 133 4 12 chr1 22743513 22743609 -219920744 - AluSx SINE Alu -183 135 40 624 144 0 0 chr1 22743609 22743699 -219920654 - AluJ/FLAM SINE Alu -222 90 1 285 296 23 29 chr1 22743757 22743929 -219920424 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 259 304 107 0 chr1 22744294 22744406 -219919947 - MIR SINE MIR -116 146 23 341 192 283 0 chr1 22745441 22745540 -219918813 - MIR3 SINE MIR -53 155 29 416 270 63 69 chr1 22746423 22746557 -219917796 + MER91B DNA MER1_type 3 137 -53 1960 119 42 0 chr1 22746557 22746842 -219917511 - AluSx SINE Alu -15 297 1 416 270 63 69 chr1 22746842 22746896 -219917457 + MER91B DNA MER1_type 137 190 0 1192 213 29 0 chr1 22747512 22747752 -219916601 + MIR SINE MIR 6 252 -10 237 309 21 0 chr1 22747758 22747852 -219916501 + MER113 DNA MER1_type? 17 112 -409 2262 69 0 0 chr1 22747872 22748174 -219916179 + AluSg SINE Alu 3 304 0 1741 143 11 7 chr1 22748275 22748577 -219915776 - AluSx SINE Alu 0 308 6 242 397 22 15 chr1 22748673 22748809 -219915544 - MIR SINE MIR -108 154 18 2309 98 0 0 chr1 22749621 22749916 -219914437 + AluSx SINE Alu 1 295 -17 401 230 11 0 chr1 22749920 22750007 -219914346 - MIR SINE MIR 0 262 175 415 204 11 0 chr1 22750015 22750103 -219914250 + MER3 DNA MER1_type 17 105 -104 274 361 57 0 chr1 22751240 22751362 -219912991 + L2 LINE L2 3144 3272 0 234 269 194 0 chr1 22751362 22751455 -219912898 + L2 LINE L2 3162 3272 0 233 250 216 0 chr1 22752366 22752482 -219911871 + MER104 DNA Tc2 1 141 -39 282 286 9 67 chr1 22752482 22752587 -219911766 - MIR SINE MIR -139 123 25 2226 82 3 3 chr1 22752588 22752880 -219911473 - AluSg SINE Alu -18 292 1 476 258 161 0 chr1 22753604 22753759 -219910594 + MER104 DNA MER2_type 1 180 0 795 236 95 21 chr1 22753789 22753877 -219910476 - MIR SINE MIR 0 262 182 2388 77 0 0 chr1 22753877 22754175 -219910178 - AluSx SINE Alu -14 298 1 795 236 95 21 chr1 22754175 22754327 -219910026 - MIR SINE MIR -80 182 4 360 254 108 75 chr1 22756317 22756362 -219907991 - MIR SINE MIR -50 212 170 2228 53 3 30 chr1 22756362 22756707 -219907646 + AluY SINE Alu 1 311 0 360 254 108 75 chr1 22756707 22756865 -219907488 - MIR SINE MIR -92 170 4 1287 306 43 20 chr1 22758855 22759311 -219905042 + L2 LINE L2 2603 3091 -222 2251 95 3 0 chr1 22759311 22759616 -219904737 - AluSx SINE Alu -6 306 1 1287 306 43 20 chr1 22759616 22759845 -219904508 + L2 LINE L2 3091 3313 0 1421 319 161 22 chr1 22760380 22761535 -219902818 + L2 LINE L2 1070 2384 -930 996 289 56 19 chr1 22761535 22761912 -219902441 + LTR16C LTR ERVL 1 391 -100 2109 123 0 3 chr1 22761945 22762245 -219902108 - AluSg SINE Alu -11 299 1 281 360 59 20 chr1 22762248 22762401 -219901952 + L2 LINE L2 2473 2631 -683 2120 98 21 0 chr1 22763394 22763680 -219900673 - AluY SINE Alu -19 292 1 496 313 60 34 chr1 22763680 22763913 -219900440 - L2 LINE L2 -12 3260 3022 465 336 0 8 chr1 22764022 22764153 -219900200 + L2 LINE L2 3143 3272 0 252 273 41 41 chr1 22764131 22764252 -219900101 - L2 LINE L2 -225 3047 2927 * 820 102 79 31 chr1 22764271 22764398 -219899955 + FLAM_C SINE Alu 1 133 0 526 290 13 18 chr1 22765039 22765197 -219899156 + L1ME LINE L1 5572 5730 -391 2264 112 3 3 chr1 22765197 22765509 -219898844 + AluSx SINE Alu 1 312 0 526 290 13 18 chr1 22765509 22765574 -219898779 + L1ME LINE L1 5730 5794 -327 2082 101 50 0 chr1 22765688 22765986 -219898367 + AluSq SINE Alu 1 313 0 2372 77 7 3 chr1 22765986 22766296 -219898057 + AluY SINE Alu 1 311 0 602 171 111 0 chr1 22766496 22766613 -219897740 + FLAM_A SINE Alu 1 130 -3 835 160 8 0 chr1 22766620 22766751 -219897602 + FLAM_C SINE Alu 1 132 -1 507 263 63 23 chr1 22767440 22767615 -219896738 + MIR SINE MIR 9 190 -72 397 312 64 23 chr1 22769130 22769348 -219895005 + MLT1K LTR MaLR 3 229 -359 303 311 22 22 chr1 22769432 22769567 -219894786 + MLT1K LTR MaLR 448 582 -6 1251 178 28 91 chr1 22769958 22770278 -219894075 - AluJo SINE Alu 0 302 3 669 292 49 5 chr1 22770282 22770467 -219893886 + MIR SINE MIR 8 200 -62 2043 132 7 0 chr1 22770622 22770925 -219893428 - AluSq SINE Alu -8 305 1 2203 104 3 0 chr1 22770936 22771233 -219893120 - AluSx SINE Alu -14 298 1 209 267 0 0 chr1 22771321 22771366 -219892987 + (ATG)n Simple_repeat Simple_repeat 1 45 0 389 293 134 18 chr1 22771585 22771749 -219892604 + MIR3 SINE MIR 23 205 -3 230 79 0 26 chr1 22772392 22772430 -219891923 + (GGA)n Simple_repeat Simple_repeat 2 38 0 219 154 26 0 chr1 22774052 22774091 -219890262 + (CCA)n Simple_repeat Simple_repeat 2 41 0 1987 133 0 7 chr1 22774150 22774443 -219889910 - AluJb SINE Alu -7 305 15 550 279 175 0 chr1 22774481 22774664 -219889689 + MIR SINE MIR 47 261 -1 239 344 13 18 chr1 22774832 22774982 -219889371 - MIR SINE MIR -19 243 11 311 229 24 36 chr1 22776100 22776183 -219888170 - MIR SINE MIR -78 184 103 233 276 112 0 chr1 22776432 22776530 -219887823 - MIR3 SINE MIR -52 156 48 523 289 66 20 chr1 22777010 22777207 -219887146 - MIR SINE MIR -6 256 51 196 392 11 39 chr1 22777906 22778087 -219886266 - MIR SINE MIR -1 261 86 418 204 124 45 chr1 22778095 22778296 -219886057 + LTR16A1 LTR ERVL 142 358 -99 273 271 198 10 chr1 22778360 22778456 -219885897 - MIR SINE MIR -87 175 62 194 274 75 82 chr1 22778990 22779136 -219885217 + L2 LINE L2 2868 3012 -260 2299 92 0 6 chr1 22779671 22779985 -219884368 + AluSx SINE Alu 1 312 0 595 261 106 24 chr1 22780148 22780355 -219883998 - MIR SINE MIR -13 249 26 2292 89 7 0 chr1 22780389 22780691 -219883662 - AluSq SINE Alu -9 304 1 290 333 27 9 chr1 22780709 22780820 -219883533 + MIR SINE MIR 95 207 -55 193 213 0 21 chr1 22780855 22780902 -219883451 - MIR SINE MIR -143 65 20 344 316 156 8 chr1 22781688 22781849 -219882504 - MIR3 SINE MIR -63 145 3 837 321 146 40 chr1 22782063 22782549 -219881804 - L3 LINE CR1 -18 1559 1001 2269 104 0 0 chr1 22782549 22782846 -219881507 - AluSx SINE Alu -15 297 1 837 321 146 40 chr1 22782846 22782935 -219881418 - L3 LINE CR1 -576 1001 923 272 304 123 34 chr1 22783831 22784035 -219880318 - L2 LINE L2 -24 3248 3027 2196 125 0 0 chr1 22784554 22784865 -219879488 + AluSx SINE Alu 2 312 0 303 272 65 0 chr1 22785147 22785239 -219879114 + MIR SINE MIR 117 214 -48 423 0 0 0 chr1 22785293 22785340 -219879013 + (CA)n Simple_repeat Simple_repeat 2 48 0 251 297 14 0 chr1 22785390 22785460 -219878893 + MER3 DNA MER1_type 1 71 -138 256 36 0 91 chr1 22785460 22785515 -219878838 - MADE1 DNA Mariner 0 80 31 * 380 235 168 0 chr1 22785514 22785633 -219878720 + MER3 DNA MER1_type 71 209 0 529 337 23 0 chr1 22785641 22785816 -219878537 - L3 LINE CR1 -133 1444 1266 240 308 86 12 chr1 22785962 22786102 -219878251 + MIR SINE MIR 27 141 -67 1865 148 0 23 chr1 22786216 22786521 -219877832 - AluJo SINE Alu -14 298 1 208 379 73 16 chr1 22786631 22786755 -219877598 - MIR SINE MIR -130 132 2 298 270 106 15 chr1 22786759 22786914 -219877439 - MIR3 SINE MIR -21 187 19 634 316 35 13 chr1 22786970 22787201 -219877152 - MIR SINE MIR -5 257 22 278 229 10 0 chr1 22789602 22789698 -219874655 + (TGGA)n Simple_repeat Simple_repeat 3 99 0 207 284 23 23 chr1 22789989 22790077 -219874276 + G-rich Low_complexity Low_complexity 2 89 0 961 120 0 0 chr1 22791366 22791499 -219872854 - FLAM_C SINE Alu 0 133 1 1190 123 0 0 chr1 22791813 22791984 -219872369 - FRAM SINE Alu -6 170 1 332 345 126 34 chr1 22791993 22792199 -219872154 + L3 LINE CR1 1010 1234 -343 324 267 48 19 chr1 22792226 22792331 -219872022 + MIR SINE MIR 23 130 -132 379 337 59 25 chr1 22792380 22792582 -219871771 + MIR SINE MIR 52 260 -2 338 320 33 8 chr1 22792709 22792831 -219871522 + L3 LINE CR1 1382 1506 -71 288 294 92 8 chr1 22793956 22794075 -219870278 + L2 LINE L2 2978 3106 -166 282 233 67 113 chr1 22794177 22794327 -219870026 + MIR SINE MIR 105 247 -15 353 302 56 16 chr1 22794344 22794470 -219869883 + L2 LINE L2 3138 3268 -4 1702 166 0 0 chr1 22794506 22794771 -219869582 - AluJo SINE Alu -14 298 34 2099 91 57 17 chr1 22795486 22795784 -219868569 + AluSx SINE Alu 1 310 -2 230 234 39 26 chr1 22796369 22796446 -219867907 + GA-rich Low_complexity Low_complexity 2 79 0 214 209 37 15 chr1 22796565 22796699 -219867654 + (CAGAGA)n Simple_repeat Simple_repeat 2 138 0 430 310 29 11 chr1 22796704 22796878 -219867475 + GA-rich Low_complexity Low_complexity 1 177 0 343 298 24 0 chr1 22798888 22798972 -219865381 - L2 LINE L2 -11 3302 3217 318 292 21 0 chr1 22800382 22800478 -219863875 + L2 LINE L2 2941 3038 -234 553 247 240 17 chr1 22800479 22800775 -219863578 + L1ME1 LINE L1 5799 6160 -6 244 200 235 35 chr1 22800860 22800975 -219863378 + L2 LINE L2 3176 3313 0 201 284 40 14 chr1 22801338 22801412 -219862941 - MER5A DNA MER1_type -18 171 96 387 287 277 0 chr1 22802283 22802485 -219861868 - MIR SINE MIR 0 262 5 218 326 10 61 chr1 22802879 22802977 -219861376 - MIR SINE MIR -88 120 28 1719 111 8 0 chr1 22803550 22803784 -219860569 + AluSx SINE Alu 57 292 -20 896 284 11 11 chr1 22803792 22804053 -219860300 + MER46C DNA MER2_type 78 338 0 261 204 0 0 chr1 22804053 22804102 -219860251 - MIR SINE MIR -105 157 109 600 335 26 4 chr1 22805263 22805493 -219858860 - MIR SINE MIR -8 254 20 249 247 79 22 chr1 22805648 22805737 -219858616 + MIR3 SINE MIR 12 105 -103 231 211 145 13 chr1 22805829 22805905 -219858448 + L2 LINE L2 3209 3294 -19 219 295 148 0 chr1 22805923 22806060 -219858293 - MIR SINE MIR -63 145 44 2245 77 3 13 chr1 22806208 22806544 -219857809 + AluSq SINE Alu 1 313 0 180 289 0 0 chr1 22806842 22806887 -219857466 + MIR3 SINE MIR 116 160 -48 429 332 75 58 chr1 22806904 22807320 -219857033 - L2 LINE L2 0 3272 2850 216 295 66 85 chr1 22807957 22808040 -219856313 + L2 LINE L2 2737 2820 -493 326 42 21 0 chr1 22808040 22808088 -219856265 + (CA)n Simple_repeat Simple_repeat 2 50 0 216 295 66 85 chr1 22808088 22808121 -219856232 + L2 LINE L2 2820 2852 -461 297 68 0 0 chr1 22808121 22808165 -219856188 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 295 66 85 chr1 22808165 22808342 -219856011 + L2 LINE L2 2852 3039 -274 2193 88 0 0 chr1 22808353 22808637 -219855716 + AluSq SINE Alu 10 293 -20 1612 154 4 0 chr1 22808654 22808900 -219855453 + AluJo SINE Alu 42 288 -24 186 43 0 0 chr1 22808901 22808924 -219855429 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 348 258 129 0 chr1 22808928 22809021 -219855332 - MIR SINE MIR -68 140 36 193 281 11 34 chr1 22810241 22810330 -219854023 + MIR3 SINE MIR 96 182 -26 1664 126 85 7 chr1 22810428 22810698 -219853655 - AluJo SINE Alu -21 291 1 748 237 40 50 chr1 22810743 22810941 -219853412 + MIR SINE MIR 61 256 -6 2082 81 60 3 chr1 22811728 22812013 -219852340 + AluSg SINE Alu 1 301 -9 246 227 320 21 chr1 22813298 22813395 -219850958 + MIR SINE MIR 25 150 -58 336 223 184 10 chr1 22813472 22813575 -219850778 + L2 LINE L2 3193 3313 0 506 312 77 37 chr1 22813671 22813874 -219850479 - MIR SINE MIR -18 244 35 393 301 135 0 chr1 22813916 22814079 -219850274 + MIR SINE MIR 21 205 -57 228 242 10 40 chr1 22814658 22814757 -219849596 + (CAGCC)n Simple_repeat Simple_repeat 2 97 0 580 229 92 7 chr1 22815056 22815209 -219849144 + MIR SINE MIR 67 232 -30 337 275 83 4 chr1 22815352 22815491 -219848862 - MIR3 SINE MIR -8 200 49 198 175 108 133 chr1 22815459 22815579 -219848774 + MIR SINE MIR 37 153 -109 * 2046 145 0 0 chr1 22815583 22815879 -219848474 + AluSx SINE Alu 2 297 -15 318 394 81 5 chr1 22816725 22816946 -219847407 + MIR SINE MIR 23 260 -2 477 285 169 20 chr1 22817015 22817317 -219847036 - L2 LINE L2 -85 3228 2882 181 365 48 0 chr1 22817316 22817379 -219846974 - MIR SINE MIR -71 191 126 * 227 398 11 0 chr1 22817474 22817567 -219846786 + MIR SINE MIR 41 134 -74 329 243 216 27 chr1 22818514 22818529 -219845824 - MIR SINE MIR -51 211 200 703 189 85 99 chr1 22818529 22818647 -219845706 + MER3 DNA MER1_type 1 119 -90 2375 90 0 3 chr1 22818647 22818959 -219845394 + AluSx SINE Alu 2 312 0 2044 112 0 45 chr1 22818963 22819098 -219845255 + AluSg SINE Alu 1 141 -169 2126 121 0 13 chr1 22819098 22819412 -219844941 + AluY SINE Alu 1 310 -1 2044 112 0 45 chr1 22819412 22819588 -219844765 + AluSg SINE Alu 141 298 -12 703 189 85 99 chr1 22819588 22819676 -219844677 + MER3 DNA MER1_type 122 209 0 329 243 216 27 chr1 22819676 22819808 -219844545 - MIR SINE MIR -62 200 36 183 223 131 85 chr1 23020003 23020105 -219644248 - MIR3 SINE MIR -3 205 94 447 239 37 18 chr1 23020105 23020214 -219644139 + MER81 DNA DNA 4 114 0 183 223 131 85 chr1 23020214 23020241 -219644112 - MIR3 SINE MIR -114 94 70 2278 105 44 22 chr1 23020480 23020843 -219643510 - THE1C LTR MaLR -4 371 1 230 298 169 8 chr1 23020857 23020981 -219643372 - L2 LINE L2 -6 3266 3123 583 167 0 0 chr1 23021066 23021150 -219643203 + AluS SINE Alu 2 85 -227 2048 156 3 0 chr1 23021214 23021515 -219642838 + AluJb SINE Alu 1 302 -10 927 124 0 0 chr1 23021808 23021937 -219642416 - AluSq SINE Alu -48 265 137 2274 111 3 0 chr1 23021937 23022235 -219642118 - AluSx SINE Alu -13 299 1 1742 141 6 35 chr1 23022237 23022437 -219641916 - MER49 LTR ERV1 -20 903 714 2313 102 0 3 chr1 23022437 23022731 -219641622 + AluSq SINE Alu 1 293 -20 1742 141 6 35 chr1 23022731 23022843 -219641510 - MER49 LTR ERV1 -209 714 600 1052 179 0 0 chr1 23022844 23023006 -219641347 + FAM SINE Alu 1 162 -23 3029 130 35 58 chr1 23023017 23023291 -219641062 - MER49 LTR ERV1 -328 595 316 1734 143 63 37 chr1 23023291 23023591 -219640762 + AluJb SINE Alu 1 308 -4 3029 130 35 58 chr1 23023591 23023739 -219640614 - MER49 LTR ERV1 -607 316 166 2150 106 0 26 chr1 23023739 23024041 -219640312 - AluSx SINE Alu -18 294 1 3029 130 35 58 chr1 23024041 23024226 -219640127 - MER49 LTR ERV1 -757 166 1 245 254 0 0 chr1 23024307 23024366 -219639987 + MLT1I LTR MaLR 41 99 -310 1806 140 3 62 chr1 23024366 23024687 -219639666 + AluJb SINE Alu 1 302 -10 1538 188 13 40 chr1 23024702 23025006 -219639347 + AluJb SINE Alu 1 296 -16 591 215 68 6 chr1 23025092 23025255 -219639098 + MLT1I LTR MaLR 235 407 -2 539 308 67 20 chr1 23025369 23025422 -219638931 - L1ME3 LINE L1 -248 5914 5865 2107 126 36 0 chr1 23025422 23025600 -219638753 - AluSx SINE Alu 0 312 117 522 83 0 0 chr1 23025600 23025672 -219638681 + (TA)n Simple_repeat Simple_repeat 2 73 0 2107 126 36 0 chr1 23025672 23025794 -219638559 - AluSx SINE Alu -195 117 1 539 308 67 20 chr1 23025794 23026084 -219638269 - L1ME3 LINE L1 -297 5865 5555 1889 103 0 27 chr1 23026233 23026496 -219637857 - AluSx SINE Alu -20 292 37 2377 76 7 0 chr1 23027121 23027409 -219636944 - AluSg SINE Alu -20 290 1 2232 139 0 0 chr1 23027473 23027776 -219636577 + AluSx SINE Alu 1 303 -9 2559 72 3 0 chr1 23027781 23028087 -219636266 + AluSp SINE Alu 1 307 -6 1208 113 18 0 chr1 23028160 23028328 -219636025 + AluSq SINE Alu 132 302 -11 1752 90 5 0 chr1 23028354 23028576 -219635777 + AluSq SINE Alu 88 310 -3 2256 207 29 8 chr1 23028576 23029059 -219635294 + LTR65 LTR ERV1 171 663 -6 2170 142 3 0 chr1 23029076 23029379 -219634974 - AluSx SINE Alu -6 306 3 1951 152 3 10 chr1 23029382 23029684 -219634669 - AluJo SINE Alu -12 300 1 442 304 180 58 chr1 23029705 23029745 -219634608 - L2 LINE L2 0 3313 3279 2528 81 0 0 chr1 23029745 23030053 -219634300 - AluSq SINE Alu -5 308 1 442 304 180 58 chr1 23030053 23030065 -219634288 - L2 LINE L2 -34 3279 3270 2575 70 0 3 chr1 23030065 23030377 -219633976 - AluY SINE Alu 0 311 1 442 304 180 58 chr1 23030377 23030648 -219633705 - L2 LINE L2 -43 3270 3033 2127 138 0 0 chr1 23030648 23030937 -219633416 + AluSx SINE Alu 1 289 -23 2602 74 0 3 chr1 23030937 23031248 -219633105 + AluSq SINE Alu 1 310 -3 442 304 180 58 chr1 23031248 23031355 -219632998 - L2 LINE L2 -279 3034 2827 292 227 62 82 chr1 23031506 23031603 -219632750 - MIR3 SINE MIR -8 200 106 2192 102 0 0 chr1 23032034 23032319 -219632034 - AluSx SINE Alu -27 285 1 247 275 11 62 chr1 23032650 23032763 -219631590 - MIR SINE MIR -28 180 73 352 270 63 24 chr1 23033386 23033512 -219630841 + MIR SINE MIR 84 214 -48 2135 110 7 16 chr1 23033678 23033987 -219630366 - AluSx SINE Alu -6 306 1 2298 108 7 7 chr1 23034159 23034465 -219629888 + AluSx SINE Alu 2 307 -5 378 273 130 78 chr1 23034632 23035002 -219629351 - L1ME4a LINE L1 -12 6109 5721 2153 74 47 30 chr1 23035448 23035747 -219628606 + AluSc SINE Alu 1 304 -5 558 90 51 0 chr1 23036100 23036178 -219628175 - AluJb SINE Alu -10 302 221 870 124 39 0 chr1 23036178 23036307 -219628046 - AluJb SINE Alu -124 188 55 2541 73 0 0 chr1 23036307 23036608 -219627745 - AluSp SINE Alu -12 301 1 1122 88 0 0 chr1 23036609 23036745 -219627608 - AluSq/x SINE Alu -177 136 1 618 129 50 0 chr1 23036745 23036846 -219627507 - FAM SINE Alu -3 182 77 2019 149 7 0 chr1 23037010 23037305 -219627048 + AluSg SINE Alu 1 297 -13 207 0 0 0 chr1 23038440 23038463 -219625890 + (T)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr1 23038479 23038500 -219625853 + AT_rich Low_complexity Low_complexity 1 21 0 2423 75 3 0 chr1 23039369 23039663 -219624690 + AluY SINE Alu 1 295 -16 30 0 0 0 chr1 23039716 23039746 -219624607 + AT_rich Low_complexity Low_complexity 1 30 0 2310 67 42 3 chr1 23039748 23040032 -219624321 + AluY SINE Alu 1 295 -16 1776 138 80 4 chr1 23040211 23040487 -219623866 - AluSg SINE Alu -13 297 1 2414 99 0 0 chr1 23040752 23041056 -219623297 - AluSx SINE Alu -8 304 1 2275 106 10 0 chr1 23041058 23041350 -219623003 - AluSq SINE Alu -9 304 10 1908 173 0 7 chr1 23041358 23041659 -219622694 - AluJb SINE Alu -13 299 1 1170 163 31 66 chr1 23041692 23041919 -219622434 - MER20 DNA MER1_type 0 219 1 2378 101 0 0 chr1 23042064 23042362 -219621991 + AluSx SINE Alu 1 298 -14 2319 109 3 0 chr1 23042419 23042722 -219621631 + AluSp SINE Alu 1 304 -9 442 306 139 14 chr1 23042776 23042992 -219621361 - MIR SINE MIR -10 252 10 2332 99 0 10 chr1 23043039 23043352 -219621001 - AluSg SINE Alu 0 310 1 2343 65 7 7 chr1 23043580 23043870 -219620483 + AluY SINE Alu 1 290 -21 1746 149 30 4 chr1 23043883 23044151 -219620202 + AluJo SINE Alu 18 292 -20 274 176 11 11 chr1 23044151 23044242 -219620111 + (TA)n Simple_repeat Simple_repeat 2 92 0 2048 148 13 0 chr1 23044519 23044823 -219619530 + AluSx SINE Alu 1 308 -4 249 296 40 99 chr1 23045809 23045867 -219618486 + L2 LINE L2 2948 3008 -264 1497 163 81 8 chr1 23045867 23046125 -219618228 - AluJb SINE Alu -3 309 33 249 296 40 99 chr1 23046125 23046218 -219618135 + L2 LINE L2 3008 3090 -182 196 271 0 0 chr1 23046332 23046380 -219617973 + L2 LINE L2 3193 3240 -73 2588 74 0 0 chr1 23046450 23046759 -219617594 - AluY SINE Alu -2 309 1 2449 97 0 0 chr1 23046761 23047070 -219617283 - AluSc SINE Alu 0 309 1 280 294 44 0 chr1 23047544 23047612 -219616741 + MIR SINE MIR 67 137 -71 1792 184 7 0 chr1 23047833 23048138 -219616215 + AluJo SINE Alu 1 307 -5 1641 139 0 137 chr1 23048138 23048482 -219615871 + AluJb SINE Alu 1 297 -15 2368 96 0 16 chr1 23048484 23048787 -219615566 + AluSg SINE Alu 1 298 -12 556 256 19 13 chr1 23048820 23048976 -219615377 - L1ME3A LINE L1 -20 6150 5994 662 250 109 16 chr1 23049231 23049423 -219614930 + MIR SINE MIR 48 257 -5 2140 99 0 24 chr1 23049487 23049804 -219614549 - AluSx SINE Alu 0 312 5 2460 72 0 3 chr1 23049887 23050192 -219614161 - AluY SINE Alu -7 304 1 757 298 158 23 chr1 23050198 23050641 -219613712 - L2 LINE L2 -4 3309 2807 1287 124 33 19 chr1 23051162 23051372 -219612981 - AluJo SINE Alu -13 299 87 2167 111 21 0 chr1 23051377 23051665 -219612688 - AluSx SINE Alu -18 294 1 2048 123 22 0 chr1 23051675 23051978 -219612375 - AluSx SINE Alu 0 309 1 265 225 61 52 chr1 23052055 23052175 -219612178 - L1ME3 LINE L1 -81 6081 5961 1561 194 80 65 chr1 23053141 23053614 -219610739 + MLT2B1 LTR ERVL 1 480 -40 289 155 72 0 chr1 23053620 23053717 -219610636 + (TA)n Simple_repeat Simple_repeat 1 104 0 2165 129 3 0 chr1 23053740 23054042 -219610311 - AluSx SINE Alu -9 303 1 311 57 0 75 chr1 23054072 23054125 -219610228 + MLT2B1 LTR ERVL 472 520 0 1886 126 100 0 chr1 23054196 23054466 -219609887 - AluSg SINE Alu -13 297 1 251 336 18 18 chr1 23054466 23054579 -219609774 - L2 LINE L2 -528 2786 2674 2368 86 3 3 chr1 23054596 23054899 -219609454 - AluSc SINE Alu -6 303 1 1922 134 20 36 chr1 23054903 23055208 -219609145 - AluJb SINE Alu -10 302 3 2489 78 3 3 chr1 23055421 23055727 -219608626 + AluSx SINE Alu 2 307 -5 1468 266 105 21 chr1 23055833 23056349 -219608004 - MLT1K LTR MaLR -3 585 27 284 227 140 67 chr1 23056806 23056956 -219607397 + L1ME LINE L1 5713 5873 -248 941 76 0 69 chr1 23056970 23057101 -219607252 - FLAM_C SINE Alu -10 133 12 2197 113 10 0 chr1 23057138 23057429 -219606924 - AluSq SINE Alu -19 294 1 2174 115 0 32 chr1 23057429 23057741 -219606612 - AluSq SINE Alu -10 303 1 727 254 64 18 chr1 23057805 23058025 -219606328 + MIR SINE MIR 33 262 0 2377 101 0 10 chr1 23058052 23058360 -219605993 + AluSg SINE Alu 1 305 -5 2582 47 0 3 chr1 23058454 23058754 -219605599 - AluY SINE Alu -12 299 1 1717 156 32 7 chr1 23058955 23059275 -219605078 + AluJb SINE Alu 1 327 0 250 275 101 81 chr1 23059432 23059541 -219604812 + MIR SINE MIR 84 198 -64 2056 115 10 13 chr1 23059541 23059846 -219604507 + AluSx SINE Alu 1 304 -8 250 275 101 81 chr1 23059846 23059885 -219604468 + MIR SINE MIR 198 235 -27 219 308 8 0 chr1 23060317 23060437 -219603916 + G-rich Low_complexity Low_complexity 4 124 0 1393 117 0 93 chr1 23061608 23061865 -219602488 - AluJb SINE Alu -16 296 64 25 0 0 0 chr1 23062232 23062257 -219602096 + AT_rich Low_complexity Low_complexity 1 25 0 294 29 0 0 chr1 23062300 23062335 -219602018 + (TA)n Simple_repeat Simple_repeat 1 35 0 2695 51 0 0 chr1 23062354 23062665 -219601688 - AluY SINE Alu 0 311 1 1744 168 14 7 chr1 23062903 23063195 -219601158 - AluJb SINE Alu -13 299 6 473 284 39 0 chr1 23063467 23063594 -219600759 + L2 LINE L2 3182 3313 0 998 235 45 20 chr1 23064438 23064685 -219599668 + MIR SINE MIR 7 259 -3 2233 120 3 0 chr1 23064797 23065096 -219599257 - AluSp SINE Alu -13 300 1 2266 97 0 16 chr1 23065133 23065441 -219598912 - AluSx SINE Alu -9 303 1 394 277 226 7 chr1 23065509 23065646 -219598707 + MER5A DNA MER1_type 14 180 -9 2241 89 3 54 chr1 23065898 23066211 -219598142 - AluSp SINE Alu -16 297 1 1648 171 9 35 chr1 23066221 23066537 -219597816 - AluJo SINE Alu -4 308 1 1312 65 0 0 chr1 23066541 23066695 -219597658 - AluSp SINE Alu -16 297 144 2365 84 14 0 chr1 23066959 23067256 -219597097 - AluSx SINE Alu -11 301 1 2161 112 20 0 chr1 23067472 23067768 -219596585 + AluSx SINE Alu 1 302 -10 2508 78 0 3 chr1 23068537 23068843 -219595510 + AluSq SINE Alu 1 305 -8 2309 82 0 52 chr1 23068945 23069273 -219595080 - AluSx SINE Alu -1 311 1 2228 120 10 3 chr1 23069339 23069648 -219594705 - AluSx SINE Alu -1 311 1 764 129 0 79 chr1 23070018 23070178 -219594175 + FLAM_C SINE Alu 5 153 0 190 261 65 0 chr1 23070754 23070800 -219593553 + L2 LINE L2 3215 3263 -9 2121 113 3 3 chr1 23071140 23071432 -219592921 - AluSx SINE Alu -20 292 1 1836 154 7 17 chr1 23071705 23072003 -219592350 - AluSx SINE Alu -17 295 1 1873 96 38 45 chr1 23072101 23072392 -219591961 - AluSx SINE Alu -15 297 9 297 216 91 23 chr1 23072475 23072563 -219591790 - MIR SINE MIR -87 175 82 331 322 122 22 chr1 23072968 23073148 -219591205 - MIR SINE MIR -16 246 49 1792 114 12 4 chr1 23073206 23073452 -219590901 - AluSx SINE Alu -44 268 21 936 188 0 0 chr1 23073645 23073799 -219590554 + AluSg/x SINE Alu 141 294 -18 406 310 74 28 chr1 23073978 23074194 -219590159 - L2 LINE L2 -146 3167 2930 1896 99 4 0 chr1 23074194 23074436 -219589917 + AluSp SINE Alu 1 243 -70 406 310 74 28 chr1 23074436 23074545 -219589808 - L2 LINE L2 -383 2930 2827 1599 175 31 64 chr1 23074576 23074730 -219589623 - MLT1A1 LTR MaLR -4 361 203 1611 99 43 96 chr1 23074730 23075053 -219589300 - AluSx SINE Alu -2 310 5 1599 175 31 64 chr1 23075053 23075258 -219589095 - MLT1A1 LTR MaLR -162 203 14 724 183 0 28 chr1 23075366 23075508 -219588845 + AluJb SINE Alu 159 296 -16 388 233 41 48 chr1 23076365 23076511 -219587842 + L2 LINE L2 3169 3313 0 2365 105 3 0 chr1 23076583 23076888 -219587465 - AluSx SINE Alu -6 306 1 1581 175 7 38 chr1 23076888 23077179 -219587174 - AluJb SINE Alu -30 282 1 1638 190 23 16 chr1 23077190 23077500 -219586853 - AluSx SINE Alu 0 312 1 4465 56 27 34 chr1 23077544 23077864 -219586489 + LTR10C LTR ERV1 1 317 -274 2468 93 0 3 chr1 23077864 23078176 -219586177 - AluY SINE Alu 0 311 1 4465 56 27 34 chr1 23078176 23078445 -219585908 + LTR10C LTR ERV1 317 586 -5 2625 51 0 3 chr1 23078445 23078756 -219585597 - AluY SINE Alu -1 310 1 1596 212 137 90 chr1 23079278 23079504 -219584849 - MER21B LTR ERV1 -150 713 499 2557 72 0 0 chr1 23079504 23079809 -219584544 - AluY SINE Alu -6 305 1 1596 212 137 90 chr1 23079809 23080246 -219584107 - MER21B LTR ERV1 -364 499 19 2418 100 0 7 chr1 23080667 23080977 -219583376 + AluSx SINE Alu 1 308 -4 1769 153 40 0 chr1 23081089 23081363 -219582990 - AluJo SINE Alu -27 285 1 2193 110 0 13 chr1 23081479 23081787 -219582566 - AluY SINE Alu -6 305 2 652 168 18 9 chr1 23082013 23082126 -219582227 - AluJb SINE Alu -194 118 5 2067 166 81 75 chr1 23082137 23082644 -219581709 - LTR54 LTR ERV1 0 510 1 461 250 10 0 chr1 23082773 23082869 -219581484 + MER2 DNA MER2_type 2 98 -247 594 246 89 30 chr1 23083038 23083241 -219581112 - MIR SINE MIR -2 260 46 1849 117 8 0 chr1 23083590 23083838 -219580515 + AluSx SINE Alu 1 250 -62 204 40 0 0 chr1 23083839 23083864 -219580489 + (CA)n Simple_repeat Simple_repeat 2 26 0 879 245 30 17 chr1 23083867 23084104 -219580249 + MIR SINE MIR 23 262 0 1633 148 10 61 chr1 23084271 23084582 -219579771 + AluJb SINE Alu 1 295 -17 34 24 0 0 chr1 23084897 23084938 -219579415 + AT_rich Low_complexity Low_complexity 1 41 0 301 202 143 0 chr1 23085043 23085127 -219579226 - HsTC2 DNA Tc2 -1795 103 8 2333 93 13 13 chr1 23086539 23086851 -219577502 - AluSx SINE Alu 0 312 1 283 257 49 109 chr1 23087494 23087677 -219576676 - MIR3 SINE MIR -6 202 31 2217 121 0 0 chr1 23088301 23088590 -219575763 + AluSg SINE Alu 1 289 -21 2410 89 0 3 chr1 23090288 23090592 -219573761 - AluSp SINE Alu -9 304 2 2188 121 0 7 chr1 23090733 23091031 -219573322 + AluSx SINE Alu 1 296 -16 477 161 0 0 chr1 23091125 23091206 -219573147 - L1M4 LINE L1 -1251 4895 4815 3019 195 77 54 chr1 23091216 23092362 -219571991 - L1MB5 LINE L1 -175 5999 4808 2265 128 0 0 chr1 23092362 23092667 -219571686 + AluSx SINE Alu 1 305 -7 3019 195 77 54 chr1 23092667 23093135 -219571218 - L1MB5 LINE L1 -1366 4808 4353 2084 111 0 0 chr1 23093275 23093537 -219570816 - AluSx SINE Alu -29 283 22 180 0 0 0 chr1 23099206 23099226 -219565127 + (T)n Simple_repeat Simple_repeat 1 20 0 310 280 27 0 chr1 23100726 23100801 -219563552 - MER5B DNA MER1_type -99 79 3 2831 10 0 0 chr1 23101707 23102009 -219562344 - AluY SINE Alu -9 302 1 2467 72 0 0 chr1 23102690 23102981 -219561372 - AluY SINE Alu -20 291 1 252 0 0 0 chr1 23103361 23103389 -219560964 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1903 136 0 4 chr1 23103391 23103671 -219560682 - AluSg SINE Alu -31 279 1 271 182 76 15 chr1 23104119 23104185 -219560168 - MER91B DNA MER1_type -2 188 119 295 252 57 89 chr1 23104225 23104348 -219560005 - MER91B DNA MER1_type -60 130 12 221 305 50 57 chr1 23104483 23104624 -219559729 - MIR3 SINE MIR -42 166 27 2028 105 54 0 chr1 23104678 23104954 -219559399 - AluSx SINE Alu -21 291 1 268 243 29 78 chr1 23105765 23105868 -219558485 - MER5A DNA MER1_type -74 115 18 27 0 0 0 chr1 23106008 23106035 -219558318 + AT_rich Low_complexity Low_complexity 1 27 0 1889 135 17 0 chr1 23106178 23106466 -219557887 - AluJb SINE Alu -19 293 1 328 258 55 16 chr1 23106713 23106841 -219557512 - MIR SINE MIR -14 248 116 453 205 144 107 chr1 23107192 23107407 -219556946 - MIR SINE MIR -18 244 22 231 167 0 0 chr1 23107415 23107457 -219556896 + T-rich Low_complexity Low_complexity 1 42 0 468 301 66 0 chr1 23107837 23108020 -219556333 + MIR SINE MIR 49 243 -19 190 182 0 68 chr1 23107986 23108030 -219556323 + L2 LINE L2 3214 3254 -18 * 319 252 122 26 chr1 23108649 23108764 -219555589 + MIR SINE MIR 20 145 -63 2343 88 0 7 chr1 23109279 23109575 -219554778 - AluSp SINE Alu -19 294 1 326 280 119 18 chr1 23109841 23110009 -219554344 + MIR SINE MIR 1 185 -77 799 248 92 0 chr1 23110212 23110418 -219553935 + MIR SINE MIR 2 226 -36 2664 65 23 54 chr1 23111381 23111768 -219552585 - THE1C LTR MaLR 0 375 1 256 217 133 42 chr1 23111779 23111899 -219552454 - L2 LINE L2 -66 3247 3117 2053 170 76 46 chr1 23112272 23112771 -219551582 - L1MB8 LINE L1 -5 6173 5660 331 275 128 0 chr1 23112986 23113130 -219551223 + MIR SINE MIR 50 210 -52 23 33 0 0 chr1 23113563 23113593 -219550760 + AT_rich Low_complexity Low_complexity 1 30 0 185 290 166 10 chr1 23114493 23114651 -219549702 - MIR SINE MIR -64 144 4 2409 97 0 0 chr1 23115002 23115310 -219549043 - AluSg SINE Alu -2 308 1 325 285 99 20 chr1 23115359 23115510 -219548843 + MIR SINE MIR 26 188 -74 498 234 154 27 chr1 23117094 23117282 -219547071 - MIR SINE MIR -2 260 49 290 94 19 38 chr1 23117565 23117618 -219546735 + AluSc SINE Alu 80 131 -168 510 143 0 0 chr1 23117629 23117699 -219546654 - AluJo/FRAM SINE Alu -31 281 212 2206 105 0 7 chr1 23117699 23117995 -219546358 - AluSg SINE Alu -11 299 6 2520 65 0 10 chr1 23118231 23118537 -219545816 + AluY SINE Alu 1 303 -8 247 198 68 9 chr1 23120475 23120558 -219543795 + MIR SINE MIR 87 142 -66 2036 132 3 7 chr1 23120962 23121257 -219543096 + AluSx SINE Alu 1 294 -18 413 299 22 15 chr1 23123503 23123640 -219540713 - MIR SINE MIR -118 144 7 1064 229 0 0 chr1 23123668 23123878 -219540475 - AluJb SINE Alu -9 303 94 235 280 129 32 chr1 23126327 23126420 -219537933 + MIR SINE MIR 156 257 -5 468 35 0 0 chr1 23126584 23126642 -219537711 + (TG)n Simple_repeat Simple_repeat 2 59 0 364 316 281 0 chr1 23129179 23129350 -219535003 - MIR SINE MIR -34 228 10 249 274 88 29 chr1 23129391 23129493 -219534860 - MIR SINE MIR -68 140 33 292 348 8 17 chr1 23129691 23129809 -219534544 - MIR SINE MIR -110 152 36 1011 239 56 16 chr1 23130904 23131155 -219533198 - MIR SINE MIR 0 262 2 307 374 63 44 chr1 23131218 23131488 -219532865 - L3b LINE CR1 -196 1387 1113 203 314 38 31 chr1 23131714 23131873 -219532480 + L2 LINE L2 2885 3044 -228 340 340 106 11 chr1 23131920 23132108 -219532245 - MIR SINE MIR -37 225 20 301 272 184 15 chr1 23132454 23132590 -219531763 + MIR SINE MIR 1 159 -103 193 234 21 0 chr1 23133032 23133079 -219531274 - MIR3 SINE MIR -9 199 152 338 209 48 38 chr1 23133366 23133471 -219530882 - L2 LINE L2 -6 3307 3202 310 348 52 32 chr1 23133725 23133912 -219530441 - MIR SINE MIR -51 211 16 353 352 16 0 chr1 23134197 23134322 -219530031 - MIR SINE MIR -50 212 86 502 219 6 43 chr1 23135024 23135188 -219529165 + L1MC4 LINE L1 7882 8039 -3 237 301 86 43 chr1 23135871 23136034 -219528319 + L2 LINE L2 2936 3105 -167 541 148 16 94 chr1 23136057 23136121 -219528232 + MIR SINE MIR 10 61 -201 2395 71 0 3 chr1 23136121 23136432 -219527921 - AluY SINE Alu -1 310 1 541 148 16 94 chr1 23136432 23136495 -219527858 + MIR SINE MIR 61 127 -135 330 318 15 38 chr1 23136588 23136720 -219527633 + MIR3 SINE MIR 3 131 -77 249 189 57 0 chr1 23138047 23138100 -219526253 + MIR SINE MIR 94 149 -59 498 216 133 55 chr1 23138336 23138517 -219525836 - MIR SINE MIR -39 223 29 254 285 234 0 chr1 23138536 23138694 -219525659 + L3 LINE CR1 1297 1491 -86 216 316 13 13 chr1 23138711 23138787 -219525566 - MER5A DNA MER1_type -4 185 110 242 314 66 29 chr1 23138993 23139130 -219525223 + MIR SINE MIR 113 254 -8 228 351 43 0 chr1 23139798 23139892 -219524461 + MIR3 SINE MIR 70 167 -41 413 218 59 15 chr1 23140411 23140542 -219523811 - MIR SINE MIR -62 146 15 209 339 34 0 chr1 23140589 23140648 -219523705 + L2 LINE L2 3198 3258 -14 321 270 212 1 chr1 23141921 23142087 -219522266 + MIR3 SINE MIR 2 196 -54 331 300 73 9 chr1 23142722 23142832 -219521521 - MIR SINE MIR -117 145 29 202 333 0 0 chr1 23144082 23144136 -219520217 + MIR SINE MIR 43 96 -112 323 238 10 50 chr1 23145389 23145490 -219518863 - L2 LINE L2 -1 3271 3175 267 238 32 0 chr1 23145611 23145674 -219518679 + MIR SINE MIR 58 122 -86 788 210 45 25 chr1 23145802 23146002 -219518351 + MER20 DNA MER1_type 16 219 0 488 271 42 9 chr1 23146696 23146896 -219517457 - MIR SINE MIR -33 229 26 269 186 198 23 chr1 23147064 23147150 -219517203 - MIR SINE MIR -76 132 32 273 191 101 4 chr1 23147689 23147770 -219516583 + MIR SINE MIR 54 139 -69 404 171 171 38 chr1 23148487 23148592 -219515761 + MIR SINE MIR 27 145 -63 205 51 51 0 chr1 23148668 23148707 -219515646 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 2021 60 0 0 chr1 23199301 23199551 -219464802 + AluSg SINE Alu 59 308 -2 404 219 143 8 chr1 23199758 23199877 -219464476 - MIR SINE MIR -108 154 20 314 293 66 14 chr1 23200053 23200199 -219464154 + MIR3 SINE MIR 28 186 -22 457 222 10 48 chr1 23200498 23200603 -219463750 + MLT1I LTR MaLR 38 174 -277 272 291 19 19 chr1 23200692 23200795 -219463558 + MLT1I LTR MaLR 304 406 -3 234 150 0 0 chr1 23200873 23200913 -219463440 + (TCCC)n Simple_repeat Simple_repeat 4 43 0 204 280 20 20 chr1 23201034 23201134 -219463219 + L2 LINE L2 2973 3072 -200 462 223 151 59 chr1 23201619 23201857 -219462496 + MIR SINE MIR 2 261 -1 2267 93 0 3 chr1 23202046 23202348 -219462005 + AluSg SINE Alu 1 301 -9 2200 72 0 10 chr1 23202350 23202682 -219461671 + AluY SINE Alu 1 311 0 416 347 42 28 chr1 23202725 23202938 -219461415 - MIR SINE MIR -27 235 20 221 240 240 21 chr1 23203363 23203459 -219460894 - MIR SINE MIR -63 145 29 796 65 0 9 chr1 23203466 23203600 -219460753 - SVA Other Other 0 1386 1279 557 298 125 48 chr1 23204396 23204644 -219459709 + L2 LINE L2 3003 3269 -3 207 255 216 0 chr1 23204669 23204771 -219459582 - MER5A DNA MER1_type 0 189 66 684 251 100 13 chr1 23205164 23205403 -219458950 + MER115 DNA AcHobo 116 375 -318 1509 182 176 21 chr1 23205656 23205996 -219458357 - MSTD LTR MaLR 0 396 4 223 302 269 11 chr1 23206013 23206195 -219458158 - MIR SINE MIR -12 250 22 228 253 55 33 chr1 23207315 23207406 -219456947 - MIR SINE MIR -82 126 34 341 286 82 41 chr1 23208090 23208261 -219456092 - L2 LINE L2 -1 3271 3094 2043 118 0 55 chr1 23208655 23208985 -219455368 + AluSx SINE Alu 1 312 0 261 259 0 0 chr1 23208993 23209051 -219455302 - L2 LINE L2 -208 3064 3007 1865 122 35 65 chr1 23209059 23209428 -219454925 - THE1B LTR MaLR -6 358 1 811 345 36 21 chr1 23209504 23209893 -219454460 - L2 LINE L2 -481 2833 2439 377 240 10 34 chr1 23209906 23209938 -219454415 - MIR SINE MIR -60 148 117 2284 104 0 0 chr1 23209938 23210237 -219454116 - AluSq SINE Alu -14 299 1 377 240 10 34 chr1 23210237 23210333 -219454020 - MIR SINE MIR -91 117 58 201 304 226 9 chr1 23211345 23211460 -219452893 + MIR SINE MIR 76 215 -47 1823 124 27 40 chr1 23211556 23211854 -219452499 + AluJo SINE Alu 1 294 -18 248 263 0 66 chr1 23211871 23211947 -219452406 + L2 LINE L2 3199 3269 -3 346 304 113 43 chr1 23212007 23212237 -219452116 + MIR SINE MIR 12 257 -5 243 286 229 0 chr1 23212344 23212449 -219451904 + MLT1K LTR MaLR 102 230 -358 460 262 91 27 chr1 23212493 23212680 -219451673 + MLT1K LTR MaLR 373 571 -17 270 252 37 19 chr1 23213332 23213439 -219450914 + LTR67 LTR ERVL 449 557 0 506 238 34 14 chr1 23213893 23214040 -219450313 + MLT1K LTR MaLR 110 259 -329 411 351 84 44 chr1 23214194 23214468 -219449885 - L2 LINE L2 -9 3263 2969 2122 114 0 10 chr1 23214468 23214767 -219449586 + AluSx SINE Alu 1 296 -16 411 351 84 44 chr1 23214767 23214859 -219449494 - L2 LINE L2 -303 2969 2882 481 287 35 14 chr1 23215147 23215290 -219449063 - MER5B DNA MER1_type 0 178 33 894 212 0 0 chr1 23215290 23215460 -219448893 - FRAM SINE Alu -7 169 1 294 217 61 87 chr1 23215526 23215618 -219448735 - Charlie8 DNA MER1_type -132 198 108 2142 52 0 31 chr1 23215618 23215904 -219448449 - AluY SINE Alu 0 311 35 294 217 61 87 chr1 23215904 23215926 -219448427 - Charlie8 DNA MER1_type -222 108 87 726 272 27 2 chr1 23215978 23216171 -219448182 - MIR SINE MIR -58 150 1 503 282 77 10 chr1 23216806 23217001 -219447352 - MIR SINE MIR -12 250 43 2096 103 0 14 chr1 23217420 23217712 -219446641 + AluSg SINE Alu 2 289 -21 249 170 57 0 chr1 23218310 23218363 -219445990 + CT-rich Low_complexity Low_complexity 3 58 0 1190 169 15 5 chr1 23218953 23219206 -219445147 + L1MB3 LINE L1 5762 5984 -199 552 322 57 1 chr1 23219559 23219793 -219444560 + MIR SINE MIR 15 262 0 735 235 24 25 chr1 23219850 23220053 -219444300 + MIR SINE MIR 46 256 -6 304 319 51 6 chr1 23220096 23220253 -219444100 + MIR3 SINE MIR 3 166 -42 22 0 0 0 chr1 23220916 23220938 -219443415 + AT_rich Low_complexity Low_complexity 1 22 0 235 335 46 31 chr1 23221121 23221315 -219443038 - L2 LINE L2 -482 2832 2636 283 265 128 10 chr1 23221672 23221774 -219442579 - MIR SINE MIR -63 145 32 * 357 232 70 2 chr1 23221725 23221838 -219442515 + MIR SINE MIR 28 145 -63 468 325 103 14 chr1 23222082 23222374 -219441979 + L2 LINE L2 569 886 -2428 768 259 110 59 chr1 23223128 23223584 -219440769 + MLT1J LTR MaLR 24 502 -9 456 296 146 46 chr1 23223610 23224042 -219440311 + L2 LINE L2 2035 2509 -805 3462 145 70 39 chr1 23224055 23224441 -219439912 + L1MB3 LINE L1 5444 5864 -319 2367 79 0 0 chr1 23224441 23224732 -219439621 + AluY SINE Alu 21 311 0 3462 145 70 39 chr1 23224732 23225063 -219439290 + L1MB3 LINE L1 5864 6183 0 1419 131 4 49 chr1 23225073 23225318 -219439035 - AluSq SINE Alu -6 307 74 2121 105 6 62 chr1 23225318 23225641 -219438712 - AluSx SINE Alu -7 305 1 231 357 56 25 chr1 23225699 23225985 -219438368 + L2 LINE L2 2600 2894 -420 625 164 0 0 chr1 23226446 23226550 -219437803 + AluSp/q SINE Alu 192 295 -18 385 299 126 10 chr1 23226610 23226817 -219437536 - MIR SINE MIR -11 251 21 197 289 0 72 chr1 23227201 23227284 -219437069 + MIR SINE MIR 68 144 -118 189 0 0 0 chr1 23227284 23227305 -219437048 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 479 139 0 0 chr1 23227316 23227388 -219436965 - AluJo SINE Alu -30 282 211 1015 182 5 64 chr1 23227458 23227678 -219436675 - AluJo SINE Alu -105 207 1 2158 113 25 0 chr1 23227978 23228262 -219436091 + AluSx SINE Alu 1 291 -21 323 267 30 111 chr1 23228263 23228398 -219435955 + L1MC4 LINE L1 6558 6681 -1361 200 289 0 26 chr1 23228611 23228687 -219435666 - MIR SINE MIR -86 122 49 275 71 24 0 chr1 23228691 23228733 -219435620 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 340 295 134 0 chr1 23228803 23228952 -219435401 - MIR SINE MIR -79 183 15 190 160 40 0 chr1 23229570 23229620 -219434733 + CT-rich Low_complexity Low_complexity 1 52 0 362 327 48 18 chr1 23229626 23229794 -219434559 + MIR SINE MIR 2 174 -88 369 283 90 36 chr1 23230037 23230203 -219434150 + MER5A DNA MER1_type 15 189 0 1858 136 0 70 chr1 23230363 23230525 -219433828 - AluJb SINE Alu -18 294 163 2091 123 3 13 chr1 23230525 23230825 -219433528 - AluSx SINE Alu -15 297 1 1858 136 0 70 chr1 23230825 23230978 -219433375 - AluJb SINE Alu -149 163 1 224 79 26 0 chr1 23231114 23231152 -219433201 + MIR SINE MIR 112 150 -112 195 261 0 0 chr1 23231219 23231265 -219433088 - L2 LINE L2 -17 3255 3210 * 347 302 58 0 chr1 23231242 23231381 -219432972 - MIR SINE MIR -34 228 82 261 291 0 38 chr1 23231442 23231521 -219432832 + C-rich Low_complexity Low_complexity 4 79 0 2404 108 0 0 chr1 23231763 23232068 -219432285 - AluSx SINE Alu -7 305 1 209 169 102 17 chr1 23232115 23232174 -219432179 - L2 LINE L2 -14 3258 3195 295 294 11 11 chr1 23232555 23232647 -219431706 + L2 LINE L2 2970 3061 -211 181 328 16 0 chr1 23233495 23233559 -219430794 + L2 LINE L2 3206 3270 -2 1065 217 43 4 chr1 23233677 23233907 -219430446 - MIR SINE MIR -18 244 6 269 353 140 14 chr1 23234604 23234825 -219429528 + MIR SINE MIR 14 262 0 1187 228 161 21 chr1 23234885 23235271 -219429082 + MLT1K LTR MaLR 146 585 -3 231 282 245 37 chr1 23235471 23235826 -219428527 - L2 LINE L2 0 3272 2844 2427 253 63 41 chr1 23236137 23236270 -219428083 - L1ME3A LINE L1 -91 6079 5950 2251 120 0 0 chr1 23236270 23236569 -219427784 - AluSx SINE Alu -13 299 1 2427 253 63 41 chr1 23236569 23237106 -219427247 - L1ME3A LINE L1 -220 5950 5426 2524 66 0 10 chr1 23237106 23237410 -219426943 - AluY SINE Alu -10 301 1 2427 253 63 41 chr1 23237410 23237488 -219426865 - L1ME3A LINE L1 -744 5426 5351 2404 86 0 3 chr1 23237488 23237790 -219426563 - AluSx SINE Alu -11 301 1 2427 253 63 41 chr1 23237790 23238290 -219426063 - L1ME3A LINE L1 -819 5351 4863 1903 167 0 3 chr1 23238290 23238583 -219425770 - AluJb SINE Alu -20 292 1 2427 253 63 41 chr1 23238583 23238764 -219425589 - L1ME3A LINE L1 -1307 4863 4610 405 0 0 0 chr1 23238764 23238809 -219425544 + (CA)n Simple_repeat Simple_repeat 1 45 0 2427 253 63 41 chr1 23238809 23238897 -219425456 - L1ME3A LINE L1 -1560 4610 4525 1708 122 0 0 chr1 23239032 23239262 -219425091 + AluSg/x SINE Alu 74 303 -7 2074 109 3 14 chr1 23239390 23239698 -219424655 - AluSx SINE Alu 0 305 1 667 257 85 18 chr1 23239699 23239971 -219424382 - L1ME4a LINE L1 -243 5878 5589 180 254 48 16 chr1 23239982 23240045 -219424308 - MIR SINE MIR -125 83 19 1814 159 3 39 chr1 23240450 23240758 -219423595 - AluJo SINE Alu -15 297 1 285 288 42 34 chr1 23240767 23240885 -219423468 + MIR SINE MIR 74 192 -70 333 333 0 9 chr1 23241841 23241955 -219422398 + MIR SINE MIR 54 166 -96 5420 176 31 45 chr1 23242024 23242572 -219421781 - L1MC2 LINE L1 -8 6336 5782 2430 100 3 0 chr1 23242572 23242881 -219421472 - AluSg SINE Alu 0 310 1 5420 176 31 45 chr1 23242881 23244757 -219419596 - L1MC2 LINE L1 -562 5782 3960 429 20 0 0 chr1 23244757 23244807 -219419546 + (TG)n Simple_repeat Simple_repeat 2 51 0 5420 176 31 45 chr1 23244807 23244842 -219419511 - L1MC2 LINE L1 -2384 3960 3926 227 259 123 0 chr1 23244850 23244931 -219419422 + MIR SINE MIR 162 252 -10 1030 207 55 17 chr1 23244954 23245191 -219419162 + MIR SINE MIR 17 262 0 227 213 0 0 chr1 23245193 23245240 -219419113 + (TTA)n Simple_repeat Simple_repeat 1 47 0 415 298 209 0 chr1 23245310 23245468 -219418885 + MIR SINE MIR 38 228 -34 2318 102 3 22 chr1 23245482 23245795 -219418558 - AluSp SINE Alu -6 307 1 237 65 0 0 chr1 23245797 23245828 -219418525 + (TTA)n Simple_repeat Simple_repeat 2 32 0 327 203 114 0 chr1 23245940 23246019 -219418334 + L3 LINE CR1 1382 1469 -108 2300 114 0 16 chr1 23246138 23246455 -219417898 + AluSx SINE Alu 1 312 0 334 294 24 24 chr1 23246628 23246754 -219417599 - MIR SINE MIR -58 150 25 561 355 28 47 chr1 23247032 23247204 -219417149 - L2 LINE L2 0 3272 3107 1347 211 147 20 chr1 23247204 23247598 -219416755 - MLT1J2 LTR MaLR -4 446 3 561 355 28 47 chr1 23247598 23247743 -219416610 - L2 LINE L2 -165 3107 2961 935 212 26 0 chr1 23248190 23248383 -219415970 + MER58A DNA MER1_type 27 224 0 231 358 84 0 chr1 23248736 23248831 -219415522 - MIR SINE MIR -71 191 89 183 277 46 15 chr1 23249392 23249457 -219414896 + L2 LINE L2 3247 3313 0 279 79 0 0 chr1 23249723 23249761 -219414592 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 197 65 32 0 chr1 23250135 23250166 -219414187 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 2514 61 3 0 chr1 23250172 23250469 -219413884 - AluY SINE Alu -13 298 1 218 200 0 20 chr1 23250684 23250734 -219413619 - MIR SINE MIR -137 125 77 217 258 134 10 chr1 23252495 23252592 -219411761 - MIR SINE MIR -73 189 81 835 265 117 31 chr1 23253236 23253682 -219410671 - L2 LINE L2 -23 3290 2807 352 301 115 19 chr1 23253703 23253859 -219410494 - MIR3 SINE MIR -9 199 29 307 263 148 38 chr1 23253895 23254104 -219410249 - MIR SINE MIR 0 262 31 1702 144 58 7 chr1 23255404 23255681 -219408672 - AluJo SINE Alu -9 303 13 2278 114 0 0 chr1 23255702 23256023 -219408330 - AluSg SINE Alu 0 310 1 331 364 66 28 chr1 23256199 23256518 -219407835 + L2 LINE L2 2941 3271 -1 293 284 84 44 chr1 23257304 23257579 -219406774 + HAL1b LINE L1 668 953 -395 303 309 97 33 chr1 23257757 23258301 -219406052 + L1MC4a LINE L1 2904 3482 -2664 1089 271 104 66 chr1 23258398 23258568 -219405785 + L1MC4a LINE L1 5255 5417 -2391 2071 137 3 13 chr1 23258568 23258881 -219405472 - AluSx SINE Alu -2 310 1 1089 271 104 66 chr1 23258881 23259393 -219404960 + L1MC4a LINE L1 5417 5963 -1845 23 0 0 0 chr1 23259514 23259537 -219404816 + AT_rich Low_complexity Low_complexity 1 23 0 1665 105 0 4 chr1 23259586 23259814 -219404539 + AluSg/x SINE Alu 84 310 0 1097 237 123 26 chr1 23260690 23261153 -219403200 - MLT1E2 LTR MaLR -88 542 57 588 313 71 18 chr1 23261227 23261451 -219402902 - MIR SINE MIR 0 262 27 2283 116 0 10 chr1 23261453 23261755 -219402598 - AluSq SINE Alu -14 299 1 565 307 32 0 chr1 23262657 23262846 -219401507 + MIR SINE MIR 47 241 -21 455 317 116 25 chr1 23262862 23263380 -219400973 + L2 LINE L2 2100 2664 -650 271 218 27 82 chr1 23263402 23263512 -219400841 + L2 LINE L2 2871 2974 -298 249 325 112 10 chr1 23263614 23263807 -219400546 + MIR SINE MIR 30 246 -16 1487 138 54 62 chr1 23264077 23264115 -219400238 - AluJb SINE Alu -3 309 272 2470 92 0 0 chr1 23264115 23264419 -219399934 - AluSx SINE Alu -8 304 1 1487 138 54 62 chr1 23264419 23264656 -219399697 - AluJb SINE Alu -40 272 36 460 252 99 13 chr1 23264752 23264903 -219399450 - MIR SINE MIR -56 206 43 868 231 41 0 chr1 23265356 23265551 -219398802 + MER63A DNA MER1_type 1 203 -7 414 0 0 0 chr1 23266011 23266057 -219398296 + (CA)n Simple_repeat Simple_repeat 1 46 0 452 265 145 5 chr1 23266754 23266938 -219397415 + MIR SINE MIR 38 246 -16 216 265 0 0 chr1 23266971 23267020 -219397333 + (TG)n Simple_repeat Simple_repeat 1 49 0 438 237 111 15 chr1 23267065 23267200 -219397153 + MIR SINE MIR 82 229 -33 221 304 0 14 chr1 23267619 23267688 -219396665 - MIR SINE MIR -121 141 74 204 380 56 26 chr1 23267795 23267990 -219396363 + L2 LINE L2 2698 2898 -416 239 321 55 18 chr1 23268114 23268223 -219396130 + L2 LINE L2 3133 3245 -27 272 217 87 0 chr1 23268541 23268610 -219395743 - MIR SINE MIR -98 164 90 2525 152 124 21 chr1 23268745 23269259 -219395094 + MLT1F1 LTR MaLR 1 567 0 1071 230 91 19 chr1 23269269 23269651 -219394702 + L1ME3A LINE L1 5731 6161 -1 252 291 70 38 chr1 23270406 23270564 -219393789 + L2 LINE L2 2854 3016 -256 1344 144 22 121 chr1 23270565 23270651 -219393702 + AluYb8 SINE Alu 36 129 -189 207 0 0 0 chr1 23270651 23270674 -219393679 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1344 144 22 121 chr1 23270674 23270900 -219393453 + AluYb8 SINE Alu 129 317 -1 254 344 32 45 chr1 23270978 23271135 -219393218 + L2 LINE L2 3159 3313 0 278 234 39 0 chr1 23271254 23271331 -219393022 - MIR SINE MIR -108 154 75 1143 48 24 12 chr1 23271456 23271622 -219392731 + (TTTC)n Simple_repeat Simple_repeat 2 169 0 2073 116 11 0 chr1 23271626 23271902 -219392451 - AluSx SINE Alu -33 279 1 299 308 23 8 chr1 23271969 23272101 -219392252 - MIR3 SINE MIR -2 206 71 207 219 0 0 chr1 23272088 23272129 -219392224 + L2 LINE L2 3231 3271 -1 * 561 197 8 8 chr1 23272247 23272364 -219391989 - MIR SINE MIR -98 164 48 197 147 0 0 chr1 23273150 23273184 -219391169 + MIR SINE MIR 110 143 -65 209 266 138 32 chr1 23273222 23273316 -219391037 - MER5A DNA MER1_type -62 127 24 504 338 26 13 chr1 23273828 23274059 -219390294 - MIR SINE MIR -28 234 1 405 227 11 0 chr1 23274185 23274273 -219390080 - MIR SINE MIR -109 153 65 1001 263 30 13 chr1 23274278 23274579 -219389774 - LTR16C LTR ERVL 0 491 186 503 226 8 0 chr1 23274724 23274857 -219389496 + (TCCA)n Simple_repeat Simple_repeat 4 137 0 1006 178 10 0 chr1 23274881 23275500 -219388853 + (TCCA)n Simple_repeat Simple_repeat 1 625 0 428 280 59 37 chr1 23276064 23276294 -219388059 - MIR SINE MIR -15 247 9 505 303 10 27 chr1 23276527 23276705 -219387648 + MIR SINE MIR 38 212 -50 257 343 62 38 chr1 23277478 23277688 -219386665 + MIR SINE MIR 48 262 0 297 296 44 30 chr1 23277779 23277914 -219386439 - MIR3 SINE MIR -69 139 3 216 282 103 0 chr1 23278550 23278628 -219385725 + MIR SINE MIR 107 192 -70 773 244 51 0 chr1 23278807 23279004 -219385349 - MER63B DNA MER1_type 0 434 228 590 256 17 28 chr1 23279252 23279432 -219384921 - MER63B DNA MER1_type -239 197 20 2035 115 4 0 chr1 23279432 23279741 -219384612 - AluSx SINE Alu 0 314 5 717 254 52 21 chr1 23279774 23279967 -219384386 - MIR SINE MIR -5 257 59 282 306 40 24 chr1 23280708 23280832 -219383521 + MIR SINE MIR 113 238 -24 316 257 0 0 chr1 23280839 23280909 -219383444 - MIR SINE MIR -116 146 77 182 333 54 0 chr1 23281073 23281166 -219383187 - MIR SINE MIR -143 119 22 197 231 19 0 chr1 23281185 23281237 -219383116 + MIR SINE MIR 78 130 -78 1880 149 10 0 chr1 23281452 23281747 -219382606 + AluSp SINE Alu 1 298 -15 226 298 192 7 chr1 23282148 23282299 -219382054 + L2 LINE L2 2928 3106 -166 196 304 36 0 chr1 23282371 23282427 -219381926 + L2 LINE L2 3215 3272 0 375 284 37 37 chr1 23282740 23282874 -219381479 - MIR SINE MIR -62 200 67 348 313 149 0 chr1 23283696 23283830 -219380523 + MIR SINE MIR 44 197 -65 2153 107 0 0 chr1 23283913 23284229 -219380124 - AluSx SINE Alu 0 316 1 1897 133 0 54 chr1 23284234 23284550 -219379803 - AluSx SINE Alu -11 301 3 1728 193 35 80 chr1 23284563 23284699 -219379654 - L1MB8 LINE L1 0 6178 6037 180 0 0 0 chr1 23284699 23284719 -219379634 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1568 187 3 7 chr1 23284721 23285004 -219379349 - AluJb SINE Alu -30 282 1 1728 193 35 80 chr1 23285004 23285376 -219378977 - L1MB8 LINE L1 -142 6036 5690 290 96 0 19 chr1 23285691 23285743 -219378610 + (CA)n Simple_repeat Simple_repeat 2 52 0 238 327 100 9 chr1 23285745 23285855 -219378498 - MIR SINE MIR -97 165 46 949 220 39 0 chr1 23286850 23287082 -219377271 + L1ME2 LINE L1 5913 6153 -11 1641 145 64 14 chr1 23287142 23287425 -219376928 + AluJb SINE Alu 1 297 -15 279 0 0 0 chr1 23287425 23287456 -219376897 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 336 24 0 0 chr1 23287456 23287497 -219376856 + (CAGG)n Simple_repeat Simple_repeat 2 42 0 225 259 0 0 chr1 23288119 23288177 -219376176 + (CA)n Simple_repeat Simple_repeat 2 59 0 299 324 203 7 chr1 23288350 23288498 -219375855 + MIR SINE MIR 35 211 -51 271 307 34 11 chr1 23289386 23289474 -219374879 + MIR SINE MIR 35 124 -84 195 206 127 16 chr1 23289586 23289649 -219374704 + MIR3 SINE MIR 3 72 -136 346 299 8 55 chr1 23290260 23290276 -219374077 - L2 LINE L2 -2 3311 3296 189 0 0 0 chr1 23290276 23290297 -219374056 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 346 299 8 55 chr1 23290297 23290407 -219373946 - L2 LINE L2 -17 3296 3191 206 285 153 22 chr1 23290408 23290545 -219373808 + L2 LINE L2 3158 3312 -1 352 306 19 37 chr1 23290810 23290918 -219373435 + MIR SINE MIR 33 138 -70 192 321 0 0 chr1 23291537 23291593 -219372760 + MIR SINE MIR 5 60 -202 190 337 72 0 chr1 23291563 23291646 -219372707 + L2 LINE L2 3109 3197 -75 * 328 311 47 19 chr1 23291632 23291738 -219372615 - MIR SINE MIR -74 188 80 467 231 109 26 chr1 23292264 23292420 -219371933 + MIR3 SINE MIR 27 195 -13 243 206 0 63 chr1 23293079 23293142 -219371211 + MIR3 SINE MIR 104 162 -46 201 39 0 0 chr1 23293615 23293641 -219370712 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr1 23293775 23293797 -219370556 + AT_rich Low_complexity Low_complexity 1 22 0 415 313 30 0 chr1 23293909 23294043 -219370310 + MIR SINE MIR 93 230 -32 273 319 21 0 chr1 23294353 23294447 -219369906 - MIR SINE MIR -59 203 108 201 375 131 9 chr1 23294501 23294730 -219369623 - MIR SINE MIR -4 258 2 751 189 5 63 chr1 23295188 23295378 -219368975 + MER20 DNA MER1_type 1 179 -40 317 276 147 35 chr1 23295680 23295850 -219368503 + MIR3 SINE MIR 20 208 0 456 229 16 8 chr1 23295946 23296068 -219368285 + MER58B DNA MER1_type 217 339 -2 186 282 84 14 chr1 23296213 23296284 -219368069 + MIR SINE MIR 108 183 -79 731 258 60 17 chr1 23296576 23296809 -219367544 - MIR SINE MIR -16 246 4 839 202 93 16 chr1 23297296 23297544 -219366809 - MER69 DNA AcHobo 0 2526 2260 251 98 20 59 chr1 23297545 23297596 -219366757 - MER69 DNA AcHobo -1115 111 63 441 0 0 0 chr1 23298144 23298193 -219366160 + (TG)n Simple_repeat Simple_repeat 1 49 0 375 132 0 0 chr1 23298193 23298261 -219366092 + (GA)n Simple_repeat Simple_repeat 2 69 0 244 318 73 18 chr1 23298294 23298404 -219365949 - MIR3 SINE MIR -50 158 43 320 280 8 15 chr1 23299268 23299400 -219364953 + LTR33 LTR ERVL 16 146 -375 561 234 32 7 chr1 23299462 23299616 -219364737 + LTR33 LTR ERVL 278 435 -86 762 176 16 0 chr1 23299645 23299770 -219364583 - AluSq/x SINE Alu -183 129 3 473 236 108 0 chr1 23300346 23300494 -219363859 - L2 LINE L2 -616 2698 2535 2214 107 0 0 chr1 23300544 23300844 -219363509 + AluY SINE Alu 1 300 -11 186 268 18 0 chr1 23301120 23301176 -219363177 + L2 LINE L2 3227 3283 -30 312 228 140 18 chr1 23301253 23301367 -219362986 - MIR3 SINE MIR -68 140 13 188 65 0 32 chr1 23301375 23301406 -219362947 + (CCCCCT)n Simple_repeat Simple_repeat 5 34 0 271 310 121 0 chr1 23301596 23301738 -219362615 - MIR3 SINE MIR -26 182 21 207 114 0 0 chr1 23302127 23302162 -219362191 + (GGCTG)n Simple_repeat Simple_repeat 4 38 0 1920 143 3 7 chr1 23302251 23302552 -219361801 + AluJo SINE Alu 1 300 -12 401 320 180 15 chr1 23302596 23302802 -219361551 - MIR SINE MIR -20 242 3 327 269 158 39 chr1 23303733 23303967 -219360386 + L3 LINE CR1 1305 1566 -11 1093 191 0 31 chr1 23303972 23304197 -219360156 - MER58A DNA MER1_type -1 223 6 393 117 0 0 chr1 23304340 23304400 -219359953 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 192 241 0 0 chr1 23304487 23304545 -219359808 + (TTCA)n Simple_repeat Simple_repeat 2 59 0 219 254 119 0 chr1 23304755 23304814 -219359539 - L2 LINE L2 -58 3255 3190 273 246 105 9 chr1 23304821 23304935 -219359418 - L2 LINE L2 -284 2988 2864 494 282 35 0 chr1 23304956 23305126 -219359227 + (CGTG)n Simple_repeat Simple_repeat 4 179 0 328 319 113 8 chr1 23305740 23305927 -219358426 + MIR SINE MIR 34 261 -1 290 325 104 26 chr1 23306111 23306265 -219358088 + MIR SINE MIR 71 236 -26 * 350 317 85 0 chr1 23306257 23306431 -219357922 - MIR SINE MIR 0 262 65 204 390 28 7 chr1 23307492 23307633 -219356720 - MIR SINE MIR -21 241 98 245 310 0 0 chr1 23308134 23308221 -219356132 + (TGG)n Simple_repeat Simple_repeat 2 88 0 355 298 190 30 chr1 23308475 23308844 -219355509 - L2 LINE L2 -1 3271 2844 509 230 6 0 chr1 23309319 23309497 -219354856 + (TG)n Simple_repeat Simple_repeat 2 180 0 186 43 0 0 chr1 23309566 23309589 -219354764 + (TG)n Simple_repeat Simple_repeat 2 24 0 1240 271 142 12 chr1 23309722 23310435 -219353918 - L2 LINE L2 0 3313 2503 514 274 19 13 chr1 23310649 23310831 -219353522 + MIR SINE MIR 37 215 -47 288 278 148 28 chr1 23310939 23311047 -219353306 - MIR SINE MIR -66 142 22 783 89 9 0 chr1 23311225 23311337 -219353016 - AluSg/x SINE Alu -2 307 195 420 143 0 0 chr1 23311551 23311621 -219352732 + (TG)n Simple_repeat Simple_repeat 2 71 0 1968 100 10 48 chr1 23313204 23313515 -219350838 - AluSg SINE Alu -11 299 1 187 295 33 0 chr1 23313588 23313649 -219350704 + L2 LINE L2 3244 3306 -7 2318 100 0 0 chr1 23314347 23314648 -219349705 + AluSx SINE Alu 1 301 -11 198 280 47 37 chr1 23314868 23314975 -219349378 - L2 LINE L2 -787 2527 2420 283 241 58 23 chr1 23315046 23315133 -219349220 + MIR SINE MIR 80 169 -93 847 177 4 16 chr1 23315815 23316075 -219348278 + (TTCA)n Simple_repeat Simple_repeat 1 256 0 599 208 11 11 chr1 23316087 23316265 -219348088 + (TTCA)n Simple_repeat Simple_repeat 3 180 0 200 59 29 0 chr1 23316305 23316339 -219348014 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chr1 23317208 23317239 -219347114 + AT_rich Low_complexity Low_complexity 1 31 0 560 255 88 56 chr1 23317717 23317968 -219346385 + MIR SINE MIR 4 262 0 474 313 31 19 chr1 23318007 23318167 -219346186 + MIR SINE MIR 101 262 0 271 209 267 12 chr1 23318332 23318418 -219345935 - MIR SINE MIR -63 145 38 222 150 0 0 chr1 23318485 23318525 -219345828 + (ATG)n Simple_repeat Simple_repeat 1 40 0 375 326 39 16 chr1 23318534 23318663 -219345690 - MIR SINE MIR -37 225 94 231 311 14 0 chr1 23318814 23318888 -219345465 - MIR3 SINE MIR -52 156 82 242 299 55 47 chr1 23319459 23319586 -219344767 + MIR3 SINE MIR 38 165 -43 487 324 42 24 chr1 23320181 23320394 -219343959 + MIR SINE MIR 29 245 -17 220 250 0 0 chr1 23320601 23320649 -219343704 + L2 LINE L2 3263 3310 -3 414 0 0 0 chr1 23320979 23321025 -219343328 + (TG)n Simple_repeat Simple_repeat 2 47 0 282 259 26 35 chr1 23321167 23321283 -219343070 - L2 LINE L2 -184 3129 3015 581 293 19 43 chr1 23321409 23321617 -219342736 + MIR SINE MIR 60 262 0 247 309 149 48 chr1 23321776 23321944 -219342409 - MIR SINE MIR -45 217 33 433 281 98 24 chr1 23322395 23322559 -219341794 + MIR3 SINE MIR 16 191 -17 946 238 21 148 chr1 23322573 23322769 -219341584 - L2 LINE L2 0 3313 3094 1819 170 23 0 chr1 23322769 23323069 -219341284 - AluJb SINE Alu 0 312 6 946 238 21 148 chr1 23323069 23323431 -219340922 - L2 LINE L2 -219 3094 2826 365 223 75 0 chr1 23323484 23323578 -219340775 + MER20B DNA MER1_type 63 163 -620 1837 179 0 22 chr1 23323609 23324005 -219340348 + AluJb SINE Alu 1 389 0 4227 161 26 23 chr1 23324010 23324244 -219340109 + L1MB3 LINE L1 5441 5673 -510 1913 150 0 3 chr1 23324244 23324550 -219339803 - AluSx SINE Alu -7 305 1 4227 161 26 23 chr1 23324550 23325055 -219339298 + L1MB3 LINE L1 5673 6182 -1 2193 112 3 6 chr1 23325064 23325378 -219338975 + AluSq SINE Alu 1 313 0 452 300 75 31 chr1 23325423 23325716 -219338637 - L2 LINE L2 -534 2780 2475 218 352 109 31 chr1 23326741 23326934 -219337419 - L3b LINE CR1 -4 1579 1372 1504 245 125 12 chr1 23326941 23327452 -219336901 + MLT1K LTR MaLR 1 569 -19 250 347 37 21 chr1 23327464 23327654 -219336699 - L3b LINE CR1 -218 1365 1173 500 309 121 42 chr1 23327658 23328062 -219336291 - MLT1K LTR MaLR -2 586 151 1104 96 0 0 chr1 23328284 23328493 -219335860 + (TCCA)n Simple_repeat Simple_repeat 1 209 0 363 44 0 0 chr1 23328513 23328558 -219335795 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 356 262 35 41 chr1 23328717 23328862 -219335491 - L2 LINE L2 -183 3089 2946 328 335 21 7 chr1 23329417 23329560 -219334793 + MIR SINE MIR 4 151 -57 383 259 206 8 chr1 23330116 23330247 -219334106 - MIR3 SINE MIR -35 173 17 434 246 42 17 chr1 23330354 23330472 -219333881 - MIR SINE MIR -63 145 25 210 275 58 0 chr1 23330779 23330848 -219333505 + MIR SINE MIR 81 153 -55 319 206 15 0 chr1 23331461 23331529 -219332824 + MER117 DNA MER1_type 128 196 -1 494 281 163 0 chr1 23331727 23331880 -219332473 - MER91A DNA MER1_type -17 179 2 414 241 52 0 chr1 23332534 23332650 -219331703 - MIR3 SINE MIR -6 202 81 291 247 270 0 chr1 23332882 23332971 -219331382 - MER91A DNA MER1_type 0 196 84 596 259 129 35 chr1 23333038 23333239 -219331114 + MIR SINE MIR 11 230 -32 254 306 19 28 chr1 23333646 23333754 -219330599 - L2 LINE L2 0 3313 3207 737 309 49 8 chr1 23334288 23334534 -219329819 + MIR SINE MIR 7 262 0 374 127 0 16 chr1 23384931 23385031 -219279322 + Alu SINE Alu 235 302 0 461 157 12 0 chr1 23385036 23385119 -219279234 + FLAM_A SINE Alu 48 131 -11 192 200 0 0 chr1 23385148 23385193 -219279160 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 424 273 55 0 chr1 23385244 23385372 -219278981 - MIR SINE MIR -117 145 11 657 139 0 0 chr1 23386116 23386224 -219278129 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 1201 267 25 47 chr1 23386232 23386394 -219277959 - L2 LINE L2 -1 3312 3148 1307 106 78 18 chr1 23386394 23386611 -219277742 + MER30 DNA MER1_type 1 230 0 1201 267 25 47 chr1 23386611 23386894 -219277459 - L2 LINE L2 -165 3148 2877 523 274 39 46 chr1 23386915 23387174 -219277179 + MIR SINE MIR 6 262 0 2102 142 0 19 chr1 23387189 23387507 -219276846 + AluJo SINE Alu 1 312 0 870 186 6 6 chr1 23387526 23387687 -219276666 + FRAM SINE Alu 1 161 -5 284 293 131 0 chr1 23388219 23388318 -219276035 - L2 LINE L2 -5 3308 3197 1104 142 16 0 chr1 23388321 23388504 -219275849 + MER5A DNA MER1_type 1 186 -3 951 141 0 7 chr1 23388504 23388639 -219275714 + AluSq/x SINE Alu 1 134 -178 1499 179 24 12 chr1 23388642 23388893 -219275460 + AluSx SINE Alu 6 259 -53 474 88 0 0 chr1 23388923 23388991 -219275362 + (GAATG)n Simple_repeat Simple_repeat 3 70 0 1264 239 110 87 chr1 23389054 23389573 -219274780 + MLT1H1 LTR MaLR 1 531 -11 284 315 111 6 chr1 23389683 23389845 -219274508 + MIR3 SINE MIR 15 193 -15 623 216 94 22 chr1 23389992 23390173 -219274180 + MIR SINE MIR 21 214 -48 241 323 8 39 chr1 23390408 23390535 -219273818 + MIR SINE MIR 70 192 -70 212 271 0 0 chr1 23390649 23390708 -219273645 + MIR SINE MIR 88 146 -62 251 0 59 0 chr1 23390776 23390810 -219273543 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1823 171 0 0 chr1 23390810 23391090 -219273263 - AluJb SINE Alu -32 280 1 2207 118 3 16 chr1 23391098 23391412 -219272941 - AluSq SINE Alu -3 310 1 509 215 56 98 chr1 23391449 23391663 -219272690 + MER102a DNA MER1_type 124 328 -2 291 280 29 65 chr1 23392128 23392269 -219272084 + MIR SINE MIR 15 149 -63 2431 145 29 2 chr1 23392639 23393054 -219271299 + MSTB LTR MaLR 1 426 0 1917 253 52 21 chr1 23393054 23393568 -219270785 + MLT1K LTR MaLR 59 588 0 209 227 0 0 chr1 23393606 23393650 -219270703 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 195 146 0 0 chr1 23393663 23393704 -219270649 + (TGAG)n Simple_repeat Simple_repeat 3 43 0 554 250 22 7 chr1 23393872 23394008 -219270345 + MIR SINE MIR 88 225 -37 311 322 41 12 chr1 23394196 23394367 -219269986 - MER5A DNA MER1_type -8 181 6 383 253 0 0 chr1 23394386 23394469 -219269884 - MIR SINE MIR -65 143 61 182 206 0 0 chr1 23394930 23394964 -219269389 + MIR SINE MIR 220 253 -9 693 249 47 14 chr1 23396091 23396344 -219268009 + MIR SINE MIR 1 260 -2 791 133 0 37 chr1 23397108 23397243 -219267110 + FLAM_C SINE Alu 2 131 -2 329 224 49 56 chr1 23397274 23397304 -219267049 + L1ME1 LINE L1 3930 3959 -2187 2470 89 0 0 chr1 23397304 23397606 -219266747 + AluSq SINE Alu 1 302 -11 329 224 49 56 chr1 23397606 23397718 -219266635 + L1ME1 LINE L1 3959 4071 -2075 2727 213 101 24 chr1 23397722 23398171 -219266182 + L1ME1 LINE L1 4963 5376 -790 1597 166 22 42 chr1 23398171 23398526 -219265827 - MER7A DNA MER2_type 0 346 1 2727 213 101 24 chr1 23398526 23399194 -219265159 + L1ME1 LINE L1 5376 6161 -5 203 246 0 82 chr1 23400122 23400183 -219264170 - L2 LINE L2 -346 2968 2913 1114 251 68 38 chr1 23400240 23400610 -219263743 + MLT1K LTR MaLR 192 572 -16 803 296 14 0 chr1 23400780 23400996 -219263357 + MIR SINE MIR 30 248 -14 251 248 96 45 chr1 23401114 23401271 -219263082 + L2 LINE L2 2372 2536 -778 224 231 327 0 chr1 23401285 23401408 -219262945 + MER5A DNA MER1_type 4 174 -15 418 159 9 115 chr1 23401420 23401533 -219262820 - MER5B DNA MER1_type -6 172 72 599 283 7 0 chr1 23401773 23401925 -219262428 - MIR SINE MIR -85 177 25 1420 213 81 64 chr1 23402958 23403380 -219260973 + L1ME1 LINE L1 5736 6164 0 313 298 96 83 chr1 23403509 23403811 -219260542 + L2 LINE L2 2967 3272 0 212 248 171 9 chr1 23404375 23404480 -219259873 - L2 LINE L2 -1 3271 3150 878 259 71 0 chr1 23404543 23404782 -219259571 - MIR SINE MIR -5 257 2 344 211 14 0 chr1 23404805 23404876 -219259477 - L2 LINE L2 -1 3312 3241 207 283 80 62 chr1 23405771 23405884 -219258469 + MER5A DNA MER1_type 46 160 -29 2485 63 0 13 chr1 23405884 23406185 -219258168 - AluY SINE Alu -14 297 1 313 371 34 0 chr1 23406410 23406588 -219257765 - MIR SINE MIR -70 192 9 284 312 72 22 chr1 23407143 23407281 -219257072 - MIR3 SINE MIR -34 174 30 808 231 77 28 chr1 23408084 23408117 -219256236 + MIR SINE MIR 2 32 -230 2165 62 51 0 chr1 23408117 23408393 -219255960 + AluY SINE Alu 1 290 -21 808 231 77 28 chr1 23408393 23408606 -219255747 + MIR SINE MIR 32 260 -2 647 150 50 94 chr1 23408655 23408791 -219255562 + FRAM SINE Alu 4 134 -168 2116 67 0 34 chr1 23408791 23409058 -219255295 - AluSg SINE Alu -18 292 35 647 150 50 94 chr1 23409058 23409081 -219255272 + FRAM SINE Alu 134 156 -10 274 219 16 16 chr1 23409902 23409966 -219254387 + MLT1D LTR MaLR 1 64 -441 2017 138 14 7 chr1 23409968 23410258 -219254095 + AluSp SINE Alu 1 292 -21 715 127 38 13 chr1 23410281 23410439 -219253914 + GA-rich Low_complexity Low_complexity 4 165 0 277 108 0 0 chr1 23410439 23410476 -219253877 + (GGGGA)n Simple_repeat Simple_repeat 3 39 0 1694 201 73 32 chr1 23410476 23410914 -219253439 + MLT1D LTR MaLR 50 505 0 249 135 0 0 chr1 23410914 23410950 -219253403 + MLT1L LTR MaLR 570 605 -10 1016 168 0 18 chr1 23411003 23411170 -219253183 - FRAM SINE Alu -13 163 1 481 302 113 15 chr1 23411171 23411408 -219252945 - MIR SINE MIR -5 257 3 200 152 43 0 chr1 23411726 23411772 -219252581 + (TG)n Simple_repeat Simple_repeat 1 48 0 972 175 0 0 chr1 23411772 23411926 -219252427 - FRAM SINE Alu -22 154 1 221 236 0 0 chr1 23411975 23412030 -219252323 - MER5A DNA MER1_type -126 63 9 1487 256 73 25 chr1 23412200 23413010 -219251343 + L2 LINE L2 2457 3313 0 885 160 123 0 chr1 23413660 23413847 -219250506 - MER20 DNA MER1_type -6 213 4 430 271 131 25 chr1 23413862 23414106 -219250247 + L1ME4a LINE L1 5830 6099 -22 235 265 88 0 chr1 23414106 23414174 -219250179 - L2 LINE L2 -26 3287 3214 2107 131 10 0 chr1 23414303 23414593 -219249760 + AluJb SINE Alu 1 293 -19 210 273 0 0 chr1 23414666 23414721 -219249632 + L2 LINE L2 3258 3312 -1 192 254 70 14 chr1 23414709 23414780 -219249573 - L2 LINE L2 -548 2766 2692 * 385 273 15 53 chr1 23415135 23415267 -219249086 + L3 LINE CR1 841 967 -610 1030 190 0 0 chr1 23415433 23415617 -219248736 - MIR SINE MIR 0 262 79 487 214 87 8 chr1 23415791 23415917 -219248436 - L2 LINE L2 0 3272 3137 807 259 119 124 chr1 23416143 23417156 -219247197 - L2 LINE L2 -409 2905 1898 279 79 0 0 chr1 23417768 23417806 -219246547 + (ATG)n Simple_repeat Simple_repeat 3 40 0 208 327 7 80 chr1 23417936 23418043 -219246310 - MIR SINE MIR 0 262 168 1986 129 38 0 chr1 23418043 23418330 -219246023 - AluJb SINE Alu -14 298 1 208 327 7 80 chr1 23418330 23418372 -219245981 - MIR SINE MIR -94 168 124 1683 160 7 55 chr1 23419208 23419515 -219244838 - AluJo SINE Alu -20 292 1 698 256 90 5 chr1 23419668 23419879 -219244474 + MIR SINE MIR 21 249 -13 776 320 55 42 chr1 23419909 23420343 -219244010 - L2 LINE L2 0 3272 2833 222 378 126 0 chr1 23420414 23420549 -219243804 + MIR SINE MIR 110 261 -1 698 212 148 18 chr1 23420624 23420841 -219243512 + MIR SINE MIR 5 249 -13 2723 165 21 2 chr1 23420923 23421445 -219242908 - L1MA7 LINE L1 -6 6285 5754 318 26 0 0 chr1 23421446 23421485 -219242868 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1627 111 13 85 chr1 23421593 23421900 -219242453 - L1MA7 LINE L1 -535 5765 5481 2365 100 10 10 chr1 23422243 23422554 -219241799 + AluSq SINE Alu 1 311 -2 197 314 100 0 chr1 23423053 23423123 -219241230 + MIR SINE MIR 121 197 -65 215 306 38 75 chr1 23423931 23424091 -219240262 - MIR3 SINE MIR -14 194 41 228 338 14 0 chr1 23424203 23424274 -219240079 + L2 LINE L2 3234 3305 -8 224 304 35 29 chr1 23424416 23424587 -219239766 + (CTGGGG)n Simple_repeat Simple_repeat 6 177 0 356 297 142 14 chr1 23425290 23425438 -219238915 + MIR SINE MIR 19 185 -77 695 218 0 30 chr1 23425503 23425668 -219238685 + MIR SINE MIR 12 171 -91 413 250 31 16 chr1 23425669 23425797 -219238556 - LTR67 LTR ERVL 0 557 428 1973 180 56 0 chr1 23426414 23426792 -219237561 - L1MB7 LINE L1 -27 6157 5759 206 157 0 20 chr1 23427131 23427182 -219237171 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 1161 95 0 0 chr1 23427201 23427370 -219236983 + (TGGA)n Simple_repeat Simple_repeat 4 172 0 1721 166 53 0 chr1 23427444 23427609 -219236744 - AluJb SINE Alu -14 298 110 192 40 0 0 chr1 23427609 23427634 -219236719 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1721 166 53 0 chr1 23427634 23427751 -219236602 - AluJb SINE Alu -202 110 1 181 303 28 73 chr1 23428010 23428119 -219236234 - MIR SINE MIR -59 149 46 360 0 0 0 chr1 23428300 23428340 -219236013 + (TG)n Simple_repeat Simple_repeat 2 41 0 240 143 0 0 chr1 23428348 23428390 -219235963 + (GA)n Simple_repeat Simple_repeat 1 42 0 457 274 72 20 chr1 23428713 23428866 -219235487 + MIR SINE MIR 23 183 -79 957 193 71 14 chr1 23428909 23429121 -219235232 + MER58A DNA MER1_type 1 224 0 813 286 24 5 chr1 23429303 23429516 -219234837 + MIR SINE MIR 34 250 -12 322 248 10 10 chr1 23430009 23430110 -219234243 + MIR SINE MIR 52 152 -56 2226 94 0 13 chr1 23430481 23430788 -219233565 + AluSx SINE Alu 2 304 -8 628 283 11 6 chr1 23431072 23431249 -219233104 + MIR SINE MIR 6 183 -79 983 106 0 0 chr1 23431375 23431507 -219232846 + AluSq/x SINE Alu 4 135 -178 1982 128 7 10 chr1 23431507 23431813 -219232540 + AluSx SINE Alu 1 305 -7 300 260 72 69 chr1 23431839 23432025 -219232328 - MIR SINE MIR -45 217 23 270 376 55 0 chr1 23432365 23432530 -219231823 - MIR3 SINE MIR 0 208 35 622 185 117 31 chr1 23432673 23432835 -219231518 + MIR SINE MIR 63 238 -24 577 227 16 8 chr1 23433332 23433460 -219230893 + MIR SINE MIR 27 155 -107 1013 222 124 33 chr1 23433952 23434443 -219229910 - L1MC4a LINE L1 -17 6149 6016 1726 148 0 24 chr1 23434448 23434762 -219229591 - AluJb SINE Alu 0 307 1 613 290 6 6 chr1 23435089 23435265 -219229088 - MIR SINE MIR -21 241 66 589 311 31 34 chr1 23435573 23435895 -219228458 - L1ME4a LINE L1 -223 5898 5578 406 232 131 0 chr1 23436199 23436298 -219228055 + MIR SINE MIR 41 152 -56 474 183 108 17 chr1 23436298 23436418 -219227935 + FLAM_C SINE Alu 1 131 -2 278 326 8 47 chr1 23436525 23436654 -219227699 - MIR SINE MIR -68 140 17 2648 98 19 3 chr1 23437494 23437863 -219226490 - THE1C LTR MaLR 0 375 1 238 331 166 0 chr1 23438375 23438520 -219225833 + MIR SINE MIR 3 171 -91 269 207 24 37 chr1 23438814 23438896 -219225457 - L1MC4a LINE L1 -2009 5799 5719 780 210 69 28 chr1 23439229 23439470 -219224883 + MIR SINE MIR 6 262 0 540 244 70 0 chr1 23440591 23440770 -219223583 - MIR SINE MIR -52 210 17 259 248 52 50 chr1 23440807 23440926 -219223427 + MER5A DNA MER1_type 1 131 -47 1335 132 0 24 chr1 23441164 23441399 -219222954 - AluJb SINE Alu 0 314 85 263 278 76 97 chr1 23441888 23442032 -219222321 - MIR3 SINE MIR -66 142 2 684 286 71 109 chr1 23442260 23442602 -219221751 + L2 LINE L2 2383 2737 -576 1115 41 7 0 chr1 23442602 23442747 -219221606 + (TTCC)n Simple_repeat Simple_repeat 4 149 0 684 286 71 109 chr1 23442747 23442781 -219221572 + L2 LINE L2 2737 2771 -542 1994 122 0 3 chr1 23442781 23443077 -219221276 - AluSx SINE Alu -17 295 1 684 286 71 109 chr1 23443077 23443644 -219220709 + L2 LINE L2 2771 3311 -2 2600 149 29 5 chr1 23443674 23444089 -219220264 - MSTB LTR MaLR 0 426 2 710 224 4 96 chr1 23444652 23444902 -219219451 - MLT1K LTR MaLR -13 575 349 591 212 13 40 chr1 23445571 23445605 -219218748 + MER103 DNA DNA 1 34 -132 2038 118 54 48 chr1 23445605 23445977 -219218376 + THE1C LTR MaLR 1 374 -1 591 212 13 40 chr1 23445977 23446093 -219218260 + MER103 DNA DNA 34 147 -19 389 206 157 88 chr1 23446165 23446369 -219217984 + MIR SINE MIR 13 230 -32 1757 97 112 8 chr1 23446844 23447112 -219217241 - AluSg SINE Alu -14 296 1 293 188 78 0 chr1 23447427 23447491 -219216862 + MLT1K LTR MaLR 517 585 -3 1603 189 0 23 chr1 23447531 23447833 -219216520 + AluJo SINE Alu 1 295 -17 423 321 0 0 chr1 23447834 23447940 -219216413 - L2 LINE L2 -3 3310 3205 276 209 0 52 chr1 23448101 23448235 -219216118 + GA-rich Low_complexity Low_complexity 4 130 0 11073 192 32 22 chr1 23448235 23448938 -219215415 - L1MB3 LINE L1 -140 6043 5348 2126 111 0 0 chr1 23448938 23449257 -219215096 - AluSg SINE Alu 0 310 1 11073 192 32 22 chr1 23449257 23450448 -219213905 - L1MB3 LINE L1 -835 5348 4170 647 197 15 8 chr1 23450448 23450580 -219213773 + FLAM_A SINE Alu 1 133 0 11073 192 32 22 chr1 23450580 23451559 -219212794 - L1MB3 LINE L1 -2013 4170 3124 2115 125 0 16 chr1 23451559 23451872 -219212481 - AluSx SINE Alu -4 308 1 11073 192 32 22 chr1 23451872 23452367 -219211986 - L1MB3 LINE L1 -3059 3124 2635 755 139 14 21 chr1 23452367 23452511 -219211842 - LTR21A LTR ERV1 -19 486 344 670 204 153 61 chr1 23452532 23452728 -219211625 - LTR21A LTR ERV1 -103 402 189 667 253 12 10 chr1 23452856 23453052 -219211301 - L1MB3 LINE L1 -3537 2609 2418 1097 177 25 20 chr1 23453058 23453261 -219211092 + L1MCa LINE L1 351 554 -5872 5889 99 38 8 chr1 23453261 23454097 -219210256 - MER4D LTR ERV1 -2 901 41 4682 116 25 26 chr1 23454097 23454220 -219210133 + MER50 LTR ERV1 1 123 -611 1860 118 20 27 chr1 23454220 23454517 -219209836 + AluSx SINE Alu 2 296 -16 4682 116 25 26 chr1 23454517 23455116 -219209237 + MER50 LTR ERV1 123 722 -12 254 184 20 20 chr1 23455154 23455203 -219209150 + MER50-int LTR ERV1 1 49 -7156 358 147 88 0 chr1 23455204 23455272 -219209081 - MER50 LTR ERV1 -660 74 1 238 111 22 44 chr1 23455272 23455317 -219209036 - MER4D LTR ERV1 -859 44 1 278 239 15 15 chr1 23455317 23455384 -219208969 + L1MCa LINE L1 549 615 -5811 5702 127 34 51 chr1 23455387 23455664 -219208689 + L1MCa LINE L1 573 853 -5573 2227 106 3 0 chr1 23455664 23455966 -219208387 + AluSg SINE Alu 1 303 -7 5702 127 34 51 chr1 23455966 23456909 -219207444 + L1MCa LINE L1 853 1864 -4562 1994 141 0 0 chr1 23456909 23457207 -219207146 + AluJb SINE Alu 1 298 -14 359 204 123 31 chr1 23457207 23457328 -219207025 + L1ME1 LINE L1 6047 6334 0 441 293 153 31 chr1 23457331 23457683 -219206670 - L2 LINE L2 -615 2699 2305 308 173 0 0 chr1 23458344 23458396 -219205957 + MIR SINE MIR 183 234 -28 421 246 64 53 chr1 23458413 23458600 -219205753 + HAL1b LINE L1 1159 1347 -1 854 286 39 0 chr1 23458627 23458861 -219205492 + MIR SINE MIR 20 262 0 2170 96 6 19 chr1 23458889 23459202 -219205151 - AluSg SINE Alu -1 309 1 2106 70 0 4 chr1 23460029 23460301 -219204052 - AluSq SINE Alu -10 303 33 331 217 0 0 chr1 23460334 23460394 -219203959 - L2 LINE L2 -3 3310 3251 1839 83 0 40 chr1 23461480 23461757 -219202596 + AluSq SINE Alu 40 305 -8 1031 197 122 56 chr1 23462447 23462767 -219201586 + MER58B DNA MER1_type 1 341 0 217 252 47 126 chr1 23462942 23463069 -219201284 - MIR SINE MIR -21 241 125 490 264 0 74 chr1 23463429 23463592 -219200761 - L2 LINE L2 0 3313 3163 669 237 77 41 chr1 23463646 23463840 -219200513 - MIR SINE MIR -13 249 49 293 293 73 32 chr1 23463840 23463963 -219200390 + L2 LINE L2 3141 3268 -45 2077 104 0 10 chr1 23464025 23464341 -219200012 - AluSx SINE Alu 0 313 1 479 301 103 52 chr1 23464344 23464750 -219199603 - L2 LINE L2 -12 3301 2875 271 258 186 8 chr1 23464772 23464896 -219199457 + MIR SINE MIR 47 192 -70 699 132 110 37 chr1 23467001 23467137 -219197216 + FRAM SINE Alu 1 146 -30 484 306 190 29 chr1 23467958 23468305 -219196048 + L2 LINE L2 2354 2756 -558 24 0 0 0 chr1 23468722 23468746 -219195607 + AT_rich Low_complexity Low_complexity 1 24 0 970 113 0 7 chr1 23468763 23468905 -219195448 - AluJb SINE Alu -171 141 1 474 244 26 0 chr1 23468994 23469109 -219195244 - L1MC/D LINE L1 -2290 5518 5401 691 335 36 31 chr1 23469139 23469950 -219194403 - L1MC/D LINE L1 -913 5233 4419 213 247 49 62 chr1 23470137 23470218 -219194135 + L2 LINE L2 3193 3272 0 27 29 0 0 chr1 23470390 23470424 -219193929 + AT_rich Low_complexity Low_complexity 1 34 0 455 261 45 8 chr1 23470463 23470597 -219193756 - MIR SINE MIR 0 262 124 273 228 113 3 chr1 23470643 23470746 -219193607 - MIR SINE MIR -62 146 36 194 292 97 0 chr1 23471786 23471858 -219192495 + L2 LINE L2 3141 3219 -53 1056 280 16 0 chr1 23472235 23472492 -219191861 + MIR SINE MIR 2 262 0 467 315 34 7 chr1 23472588 23472734 -219191619 + MIR3 SINE MIR 58 207 -1 793 221 62 67 chr1 23472998 23473238 -219191115 - MIR SINE MIR 0 262 24 1071 217 33 8 chr1 23474078 23474318 -219190035 - MIR SINE MIR -15 247 2 265 220 290 30 chr1 23474441 23474541 -219189812 + L2 LINE L2 3185 3310 -3 548 236 114 12 chr1 23474603 23474857 -219189496 - L1ME4a LINE L1 -4 6117 5838 304 127 0 0 chr1 23474890 23474945 -219189408 - L1MB7 LINE L1 -18 6166 6112 3564 168 126 68 chr1 23474959 23475960 -219188393 - MER52C LTR ERV1 0 1278 9 4315 151 21 32 chr1 23475963 23476778 -219187575 - L1MB7 LINE L1 -100 6084 5279 1176 256 58 59 chr1 23476878 23477544 -219186809 + L2 LINE L2 2629 3313 0 443 354 128 37 chr1 23477785 23478277 -219186076 - L2 LINE L2 -431 2883 2347 5806 151 33 26 chr1 23478474 23478690 -219185663 + L1MC1 LINE L1 3 216 -6210 1951 120 3 0 chr1 23478690 23478973 -219185380 + AluSx SINE Alu 1 284 -28 889 126 8 0 chr1 23478846 23478973 -219185380 + AluSg/x SINE Alu 155 311 0 222 0 35 0 chr1 23478973 23479002 -219185351 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 5806 151 33 26 chr1 23479002 23480142 -219184211 + L1MC1 LINE L1 215 1374 -5052 4603 221 58 8 chr1 23480199 23482618 -219181735 + L1MC1 LINE L1 3528 6148 -465 2504 66 0 10 chr1 23482618 23482921 -219181432 - AluY SINE Alu -11 300 1 1162 61 0 0 chr1 23482923 23483054 -219181299 - AluSg1 SINE Alu -178 131 1 521 158 25 211 chr1 23483082 23483163 -219181190 - L2 LINE L2 -15 3298 3204 1470 157 0 0 chr1 23483163 23483379 -219180974 + AluJb SINE Alu 85 300 -12 521 158 25 211 chr1 23483379 23483462 -219180891 - L2 LINE L2 -109 3204 3107 882 120 0 23 chr1 23483462 23483595 -219180758 + AluJo/FLAM SINE Alu 4 133 -169 2340 80 3 13 chr1 23483597 23483896 -219180457 + AluSc SINE Alu 3 298 -11 521 158 25 211 chr1 23483896 23484006 -219180347 - L2 LINE L2 -207 3106 3072 2240 96 27 0 chr1 23484664 23484957 -219179396 - AluSc SINE Alu -8 301 1 421 330 34 46 chr1 23485039 23485102 -219179251 - MIR SINE MIR -8 254 192 983 162 32 16 chr1 23485102 23485287 -219179066 - MER53 DNA DNA -1 188 1 421 330 34 46 chr1 23485287 23485462 -219178891 - MIR SINE MIR -70 192 19 1094 238 18 0 chr1 23485654 23485877 -219178476 + MIR SINE MIR 16 242 -20 288 333 81 0 chr1 23485904 23486015 -219178338 - MIR3 SINE MIR -51 157 38 514 281 33 104 chr1 23486206 23486349 -219178004 - L2 LINE L2 -1 3271 3119 2254 112 0 22 chr1 23486349 23486662 -219177691 + AluSx SINE Alu 1 306 -6 1990 118 0 94 chr1 23486663 23486992 -219177361 + AluSq SINE Alu 1 298 -15 514 281 33 104 chr1 23486992 23487269 -219177084 - L2 LINE L2 -152 3120 2879 2423 115 25 6 chr1 23488100 23488457 -219175896 - THE1B LTR MaLR 0 364 1 204 297 27 14 chr1 23488531 23488605 -219175748 + L2 LINE L2 2409 2483 -831 273 291 110 1 chr1 23488617 23488750 -219175603 + MIR SINE MIR 33 178 -30 2279 130 0 0 chr1 23488843 23489150 -219175203 + AluSx SINE Alu 1 307 -5 191 292 26 53 chr1 23489469 23489582 -219174771 + MIR SINE MIR 150 259 -3 319 289 11 11 chr1 23489639 23489729 -219174624 + L2 LINE L2 3183 3272 0 2378 111 0 0 chr1 23489878 23490184 -219174169 + AluSx SINE Alu 1 306 -6 996 242 142 3 chr1 23490185 23490503 -219173850 - L2 LINE L2 -17 3296 2935 2273 81 0 3 chr1 23491078 23491393 -219172960 - AluSg SINE Alu 0 314 1 588 310 58 47 chr1 23491648 23491925 -219172428 - L1ME3 LINE L1 -336 5826 5539 743 200 0 29 chr1 23491925 23492095 -219172258 + L1PA16 LINE L1 5998 6162 -4 588 310 58 47 chr1 23492095 23492349 -219172004 - L1ME3 LINE L1 -623 5539 5289 807 224 33 61 chr1 23492474 23492719 -219171634 + MLT1J LTR MaLR 26 263 -248 401 220 167 65 chr1 23492813 23492875 -219171478 - L1ME3 LINE L1 -976 5170 5116 2473 63 3 0 chr1 23492875 23493174 -219171179 + AluY SINE Alu 1 300 -11 401 220 167 65 chr1 23493174 23493279 -219171074 - L1ME3 LINE L1 -1030 5116 4986 327 291 143 48 chr1 23493381 23493485 -219170868 - L1ME3 LINE L1 -2018 4128 4035 2421 73 0 13 chr1 23493485 23493787 -219170566 + AluSp SINE Alu 1 298 -15 327 291 143 48 chr1 23493787 23493892 -219170461 - L1ME3 LINE L1 -2111 4035 3899 226 309 0 0 chr1 23493994 23494075 -219170278 - L1ME3 LINE L1 -2410 3736 3656 921 166 7 13 chr1 23494082 23494233 -219170120 + AluJo SINE Alu 1 150 -162 265 256 23 15 chr1 23494312 23494445 -219169908 + CT-rich Low_complexity Low_complexity 5 138 0 385 260 12 17 chr1 23494462 23494635 -219169718 + CT-rich Low_complexity Low_complexity 5 176 0 589 180 41 25 chr1 23494752 23494874 -219169479 - FLAM_C SINE Alu -18 125 2 332 326 100 3 chr1 23494896 23495255 -219169098 - L1ME3 LINE L1 -3246 2900 2507 343 183 54 75 chr1 23495413 23495506 -219168847 + L1MC4 LINE L1 6613 6703 -1339 2223 110 10 0 chr1 23495561 23495853 -219168500 + AluSq SINE Alu 1 295 -18 378 283 100 44 chr1 23495903 23496083 -219168270 - L1MC4a LINE L1 -1577 6231 6042 411 207 60 40 chr1 23496140 23496290 -219168063 + LTR41 LTR ERVL 35 187 -586 251 282 56 0 chr1 23496466 23496537 -219167816 + LTR41 LTR ERVL 587 661 -112 790 212 66 10 chr1 23496537 23496735 -219167618 - MER3 DNA MER1_type 0 209 1 572 236 14 34 chr1 23496965 23497113 -219167240 + MER58B DNA MER1_type 197 341 0 481 169 0 0 chr1 23497140 23497217 -219167136 - MER2 DNA MER2_type 0 345 269 1802 53 0 5 chr1 23497256 23497463 -219166890 + AluY SINE Alu 1 206 -105 738 214 0 0 chr1 23497569 23497790 -219166563 + (TCCA)n Simple_repeat Simple_repeat 1 221 0 798 173 0 0 chr1 23497859 23498021 -219166332 + (TCCA)n Simple_repeat Simple_repeat 1 162 0 186 294 14 140 chr1 23498403 23498546 -219165807 + L2 LINE L2 3180 3304 -9 1360 183 11 68 chr1 23498548 23498827 -219165526 + AluJo SINE Alu 1 263 -49 219 405 0 8 chr1 23499178 23499309 -219165044 + MIR SINE MIR 9 138 -124 184 152 0 0 chr1 23499431 23499464 -219164889 + L2 LINE L2 3023 3055 -217 230 309 0 0 chr1 23499563 23499618 -219164735 + (CCCTAG)n Simple_repeat Simple_repeat 6 60 0 468 240 56 40 chr1 23500419 23500544 -219163809 + L2 LINE L2 3185 3311 -2 384 315 42 7 chr1 23500548 23500691 -219163662 - MIR SINE MIR -69 193 46 780 258 18 31 chr1 23501062 23501287 -219163066 - MIR SINE MIR -13 249 28 434 333 118 0 chr1 23501331 23501517 -219162836 + MIR SINE MIR 48 255 -7 2035 113 24 3 chr1 23501787 23502078 -219162275 - AluSq SINE Alu -12 301 5 247 150 50 67 chr1 23502395 23502455 -219161898 - MIR SINE MIR -62 146 88 289 277 11 49 chr1 23502919 23503103 -219161250 + GA-rich Low_complexity Low_complexity 1 177 0 190 152 0 61 chr1 23503118 23503184 -219161169 + (CAGAGA)n Simple_repeat Simple_repeat 6 67 0 2513 264 171 31 chr1 23503916 23505288 -219159065 - L2 LINE L2 -42 3271 1707 309 145 0 0 chr1 23505763 23505825 -219158528 + (CA)n Simple_repeat Simple_repeat 2 63 0 1270 214 55 7 chr1 23505885 23506194 -219158159 - MER46C DNA MER2_type 0 338 15 204 125 0 0 chr1 23506319 23506351 -219158002 + (TG)n Simple_repeat Simple_repeat 1 32 0 202 298 0 0 chr1 23506455 23506502 -219157851 - L3 LINE CR1 -72 1505 1459 238 148 37 0 chr1 23506605 23506659 -219157694 + CT-rich Low_complexity Low_complexity 2 57 0 627 207 0 8 chr1 23506849 23506970 -219157383 + AluJb SINE Alu 193 312 0 186 43 0 0 chr1 23506976 23506999 -219157354 + (GGAGAA)n Simple_repeat Simple_repeat 3 25 0 2338 93 3 22 chr1 23507000 23507311 -219157042 + AluY SINE Alu 1 305 -6 22 80 0 0 chr1 23507415 23507465 -219156888 + AT_rich Low_complexity Low_complexity 1 50 0 893 228 51 32 chr1 23507492 23507805 -219156548 - L1MD3 LINE L1 0 8042 7735 238 248 30 59 chr1 23508081 23508182 -219156171 - MIR SINE MIR -120 142 45 2332 97 3 3 chr1 23508817 23509117 -219155236 + AluSx SINE Alu 1 300 -12 246 228 0 0 chr1 23509137 23509194 -219155159 + L1ME LINE L1 5603 5659 -462 1983 108 4 21 chr1 23509512 23509791 -219154562 + AluSx SINE Alu 27 300 -12 800 166 7 14 chr1 23509825 23509964 -219154389 + FLAM_C SINE Alu 1 138 -5 2200 133 0 0 chr1 23509966 23510275 -219154078 + AluSx SINE Alu 1 309 -3 201 159 0 0 chr1 23510279 23510323 -219154030 + A-rich Low_complexity Low_complexity 1 44 0 770 265 81 63 chr1 23510366 23510886 -219153467 - L1ME4a LINE L1 -61 6060 5532 958 177 18 58 chr1 23510934 23511160 -219153193 - MER96B DNA MER1_type? -2 415 199 1971 130 50 13 chr1 23511410 23511711 -219152642 + AluJb SINE Alu 1 312 0 248 100 25 0 chr1 23511972 23512012 -219152341 + MER96B DNA MER1_type? 190 230 -187 183 129 0 0 chr1 23512066 23512097 -219152256 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 447 318 35 18 chr1 23512206 23512376 -219151977 + MIR SINE MIR 53 225 -37 208 287 113 40 chr1 23512421 23512571 -219151782 - L2 LINE L2 -3 3310 3150 517 210 14 0 chr1 23513033 23513171 -219151182 + GA-rich Low_complexity Low_complexity 4 143 0 350 221 90 0 chr1 23513210 23513332 -219151021 + L1ME4a LINE L1 5947 6079 -42 1953 153 10 3 chr1 23513368 23513675 -219150678 + AluSx SINE Alu 1 309 -3 231 36 0 0 chr1 23514298 23514326 -219150027 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 344 286 201 0 chr1 23515260 23515418 -219148935 - MIR SINE MIR -65 143 11 751 177 6 6 chr1 23515756 23515931 -219148422 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 716 155 6 23 chr1 23515958 23516132 -219148221 + (TGGA)n Simple_repeat Simple_repeat 1 171 0 545 163 7 26 chr1 23516150 23516303 -219148050 + (TGGA)n Simple_repeat Simple_repeat 1 150 0 1112 127 13 0 chr1 23519024 23519181 -219145172 - AluSg/x SINE Alu -21 289 131 433 121 0 0 chr1 23519181 23519239 -219145114 - AluS SINE Alu -254 59 2 1616 151 9 78 chr1 23519278 23519597 -219144756 - AluJo SINE Alu -1 311 15 483 299 34 20 chr1 23519605 23519809 -219144544 + L1ME LINE L1 5561 5767 -354 235 36 0 0 chr1 23519809 23519837 -219144516 + MER41A LTR ERV1 400 427 -127 2407 100 0 0 chr1 23519837 23520148 -219144205 - AluSx SINE Alu -1 311 1 2334 115 0 10 chr1 23520801 23521115 -219143238 + AluSx SINE Alu 1 311 -1 1199 74 0 0 chr1 23521119 23521267 -219143086 + AluYa5 SINE Alu 136 283 -28 396 311 136 57 chr1 23521274 23521798 -219142555 + L2 LINE L2 1696 2260 -1054 221 275 109 74 chr1 23521798 23522027 -219142326 + L2 LINE L2 2715 2951 -363 1874 158 0 42 chr1 23522155 23522466 -219141887 - AluSx SINE Alu -14 298 1 234 0 0 0 chr1 23522592 23522618 -219141735 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 2103 98 0 11 chr1 23523122 23523397 -219140956 + AluSq SINE Alu 40 311 -2 568 317 221 16 chr1 23523472 23523784 -219140569 + L3 LINE CR1 431 806 -771 2134 94 35 11 chr1 23523939 23524226 -219140127 + AluSx SINE Alu 1 294 -18 1967 145 14 0 chr1 23524254 23524543 -219139810 + AluJo SINE Alu 1 293 -19 692 229 22 45 chr1 23524543 23524766 -219139587 + L1MC5 LINE L1 7714 7931 -30 336 164 149 0 chr1 23525350 23525417 -219138936 - MER45A DNA AcHobo -1 177 101 1953 142 0 39 chr1 23525897 23526058 -219138295 - AluJo SINE Alu -15 297 152 2153 120 10 32 chr1 23526058 23526366 -219137987 - AluSx SINE Alu -11 301 1 1953 142 0 39 chr1 23526366 23526513 -219137840 - AluJo SINE Alu -160 152 1 515 254 108 0 chr1 23527638 23527768 -219136585 - L2 LINE L2 -7 3265 3122 218 250 60 36 chr1 23528445 23528529 -219135824 + MIR SINE MIR 127 212 -50 2242 107 0 0 chr1 23528768 23529058 -219135295 - AluSc SINE Alu -19 290 1 221 186 186 49 chr1 23529727 23529829 -219134524 + MIR SINE MIR 113 228 -34 307 170 0 0 chr1 23529846 23529893 -219134460 + L1PA16 LINE L1 6037 6083 -83 2270 98 0 13 chr1 23530201 23530508 -219133845 - AluY SINE Alu -8 303 1 2469 57 7 0 chr1 23530934 23531232 -219133121 - AluSp SINE Alu -13 300 1 870 293 29 0 chr1 23531463 23531705 -219132648 - MIR SINE MIR 0 262 14 473 191 129 52 chr1 23532154 23532364 -219131989 - L1ME4a LINE L1 -292 5829 5604 2204 120 0 0 chr1 23532660 23532959 -219131394 - AluSx SINE Alu -13 299 1 1867 163 17 0 chr1 23532996 23533296 -219131057 + AluJo SINE Alu 1 305 -7 329 255 265 29 chr1 23533296 23533489 -219130864 - MIR SINE MIR -6 256 11 21 82 0 0 chr1 23533589 23533638 -219130715 + AT_rich Low_complexity Low_complexity 1 49 0 1790 160 0 70 chr1 23533650 23533981 -219130372 - AluJo SINE Alu -2 310 3 1659 203 0 10 chr1 23534006 23534312 -219130041 - AluJo SINE Alu -7 305 3 988 216 0 0 chr1 23534497 23534668 -219129685 - FAM SINE Alu -4 171 1 1989 113 68 0 chr1 23534729 23535021 -219129332 - AluSx SINE Alu 0 312 1 433 321 62 42 chr1 23535263 23535440 -219128913 + MIR3 SINE MIR 3 183 -25 788 236 78 21 chr1 23536560 23536779 -219127574 + MIR SINE MIR 5 228 -34 2965 163 17 36 chr1 23536876 23537369 -219126984 - LTR53 LTR ERVL 0 519 35 1877 137 13 30 chr1 23537369 23537669 -219126684 - AluJb SINE Alu -17 295 1 2965 163 17 36 chr1 23537669 23537704 -219126649 - LTR53 LTR ERVL -484 35 1 505 221 182 7 chr1 23538327 23538481 -219125872 + MER5A DNA MER1_type 9 189 0 439 302 140 9 chr1 23538484 23538706 -219125647 + MIR SINE MIR 12 262 0 469 252 24 3 chr1 23539044 23539170 -219125183 + MIR SINE MIR 47 175 -33 262 246 0 18 chr1 23539891 23539948 -219124405 + MIR3 SINE MIR 102 157 -51 1738 144 32 11 chr1 23541419 23541703 -219122650 - AluJb SINE Alu -22 290 1 22 0 0 0 chr1 23542315 23542337 -219122016 + AT_rich Low_complexity Low_complexity 1 22 0 222 222 37 19 chr1 23542480 23542534 -219121819 - MIR SINE MIR 0 262 208 2058 89 4 4 chr1 23542589 23542860 -219121493 + AluSc SINE Alu 38 308 -1 685 88 0 11 chr1 23542939 23543030 -219121323 - AluJ/FLAM SINE Alu -221 91 2 1264 200 15 48 chr1 23543302 23543424 -219120929 + MIR SINE MIR 1 126 -136 2495 66 3 0 chr1 23543424 23543728 -219120625 - AluY SINE Alu -6 305 1 1264 200 15 48 chr1 23543728 23543875 -219120478 + MIR SINE MIR 126 261 -1 1154 207 48 51 chr1 23543967 23544319 -219120034 - L1ME2 LINE L1 -2 6145 5795 799 206 53 18 chr1 23544315 23544485 -219119868 - L1ME2 LINE L1 -568 5579 5404 * 360 318 58 13 chr1 23544606 23544799 -219119554 - L1MCa LINE L1 -898 1889 1443 536 241 88 58 chr1 23544815 23545076 -219119277 - L1MCa LINE L1 -4910 1506 1238 2009 114 7 17 chr1 23545089 23545388 -219118965 - AluSx SINE Alu -16 296 1 372 265 127 24 chr1 23545388 23545641 -219118712 - L1ME2 LINE L1 -864 5265 4987 183 80 0 0 chr1 23545677 23545702 -219118651 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1188 23 0 0 chr1 23545702 23545832 -219118521 - AluY SINE Alu -181 130 1 807 296 78 49 chr1 23545891 23546401 -219117952 - L1ME2 LINE L1 -5547 572 48 252 0 0 0 chr1 23546970 23546998 -219117355 + (A)n Simple_repeat Simple_repeat 1 28 0 35 0 0 0 chr1 23547099 23547134 -219117219 + AT_rich Low_complexity Low_complexity 1 35 0 5987 224 68 15 chr1 23547489 23547972 -219116381 - L1MC1 LINE L1 -1 6612 6156 2502 45 0 26 chr1 23547972 23548280 -219116073 + AluY SINE Alu 1 300 -11 5987 224 68 15 chr1 23548280 23550608 -219113745 - L1MC1 LINE L1 -457 6156 3645 7212 156 62 25 chr1 23550706 23551896 -219112457 - L1MC1 LINE L1 -4963 1463 209 2045 120 3 0 chr1 23551896 23552217 -219112136 - AluSx SINE Alu 0 322 1 7212 156 62 25 chr1 23552217 23552433 -219111920 - L1MC1 LINE L1 -6217 209 3 371 354 123 44 chr1 23552630 23553215 -219111138 + L2 LINE L2 2347 2977 -337 2788 255 110 35 chr1 23553363 23554625 -219109728 - L2 LINE L2 0 3313 1938 403 346 28 11 chr1 23554728 23554910 -219109443 + MIR SINE MIR 78 262 0 213 39 0 0 chr1 23556065 23556091 -219108262 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2280 85 0 4 chr1 23556096 23556377 -219107976 - AluSg SINE Alu -30 280 1 607 302 78 12 chr1 23557179 23557424 -219106929 - MIR SINE MIR 0 262 2 183 42 0 0 chr1 23558614 23558638 -219105715 + (TC)n Simple_repeat Simple_repeat 1 24 0 1084 188 49 163 chr1 23558658 23559114 -219105239 - L1ME1 LINE L1 -6 6160 5754 532 245 82 0 chr1 23559114 23559273 -219105080 + MIR SINE MIR 75 246 -16 461 326 22 28 chr1 23559581 23559759 -219104594 - MER5A DNA MER1_type -9 180 4 249 280 90 30 chr1 23559885 23559985 -219104368 - L2 LINE L2 -5 3267 3162 2216 97 0 14 chr1 23560675 23560998 -219103355 - AluSx SINE Alu 0 319 1 339 274 24 0 chr1 23561046 23561130 -219103223 + MIR SINE MIR 55 140 -122 529 250 79 38 chr1 23561760 23562000 -219102353 - MLT1K LTR MaLR -46 542 293 817 168 8 44 chr1 23562022 23562277 -219102076 - MLT2B3 LTR ERVL -83 460 225 254 119 0 24 chr1 23562746 23562788 -219101565 - L2 LINE L2 -5 3308 3268 371 214 141 7 chr1 23562914 23563048 -219101305 + MIR SINE MIR 33 183 -79 1659 215 91 48 chr1 23564111 23564629 -219099724 - MLT1F1 LTR MaLR 0 567 4 210 335 78 30 chr1 23565590 23565757 -219098596 - L2 LINE L2 -1090 2224 2050 472 304 159 14 chr1 23566225 23566445 -219097908 - L2 LINE L2 -3 3269 3018 192 324 105 29 chr1 23567452 23567557 -219096796 + L2 LINE L2 3122 3234 -38 597 154 0 0 chr1 23567829 23567939 -219096414 + (TGGA)n Simple_repeat Simple_repeat 4 113 0 931 247 53 18 chr1 23568212 23568495 -219095858 - L1ME4a LINE L1 -295 5826 5534 195 42 0 0 chr1 23568790 23568814 -219095539 + (CA)n Simple_repeat Simple_repeat 1 24 0 640 261 86 21 chr1 23569536 23569770 -219094583 - MIR SINE MIR -4 258 10 554 261 21 28 chr1 23569893 23570035 -219094318 - MIR SINE MIR -111 151 11 804 272 63 8 chr1 23572280 23572519 -219091834 + MIR SINE MIR 5 256 -6 271 226 0 108 chr1 23572565 23572658 -219091695 - L1ME LINE L1 -440 5681 5599 216 313 0 15 chr1 23573309 23573376 -219090977 + GA-rich Low_complexity Low_complexity 1 66 0 2216 116 0 7 chr1 23574521 23574831 -219089522 - AluSx SINE Alu -4 308 1 342 353 21 13 chr1 23574881 23575032 -219089321 - MIR SINE MIR -65 143 37 213 358 37 15 chr1 23577488 23577622 -219086731 + MIR SINE MIR 111 247 -15 1409 119 36 5 chr1 23578408 23578627 -219085726 + L1MA1 LINE L1 6075 6300 -2 1997 98 0 4 chr1 23578644 23578909 -219085444 + AluY SINE Alu 44 307 -4 248 122 0 20 chr1 23579029 23579078 -219085275 - MADE1 DNA Mariner 0 80 33 1003 289 144 13 chr1 23579423 23580067 -219084286 + L2 LINE L2 2592 3313 0 * 1423 243 71 129 chr1 23580038 23580538 -219083815 - L2 LINE L2 -9 3304 2777 2482 163 105 4 chr1 23580538 23580997 -219083356 - MLT1D LTR MaLR 0 505 1 1423 243 71 129 chr1 23580997 23581447 -219082906 - L2 LINE L2 -536 2777 2334 288 60 100 40 chr1 23581447 23581497 -219082856 - MLT1D LTR MaLR 0 505 453 1423 243 71 129 chr1 23581497 23581700 -219082653 - L2 LINE L2 -979 2334 2121 180 0 0 0 chr1 23583363 23583383 -219080970 + (CACAG)n Simple_repeat Simple_repeat 3 22 0 674 305 16 28 chr1 23583388 23583637 -219080716 + MIR SINE MIR 17 262 0 187 301 53 35 chr1 23583818 23583931 -219080422 - L2 LINE L2 -2 3270 3156 716 225 51 34 chr1 23584542 23584778 -219079575 + MIR SINE MIR 23 262 0 474 354 101 13 chr1 23586269 23586506 -219077847 + MIR SINE MIR 5 262 0 404 363 38 14 chr1 23587123 23587335 -219077018 + MIR SINE MIR 46 262 0 385 303 0 0 chr1 23587260 23587359 -219076994 - MIR SINE MIR -1 261 163 * 259 220 0 0 chr1 23587360 23587410 -219076943 - MIR SINE MIR -209 53 4 584 265 34 0 chr1 23587669 23587816 -219076537 + MIR SINE MIR 32 183 -79 1153 129 0 6 chr1 23587946 23588116 -219076237 - AluSg/x SINE Alu -10 302 134 2508 49 0 13 chr1 23588128 23588433 -219075920 - AluY SINE Alu -10 301 1 1665 205 135 9 chr1 23588433 23588965 -219075388 - HsTC2 DNA Tc2 -35 1863 1265 303 241 232 0 chr1 23588966 23589078 -219075275 - HsTC2 DNA Tc2 -1760 138 1 713 183 104 37 chr1 23589124 23589288 -219075065 + MER69A DNA AcHobo 1 175 -2 1737 139 17 43 chr1 23593717 23594018 -219070335 - AluJo SINE Alu -19 293 1 431 282 48 77 chr1 23596083 23596292 -219068061 + MIR SINE MIR 3 205 -57 207 285 190 19 chr1 23597009 23597112 -219067241 + MIR SINE MIR 5 101 -107 250 283 14 101 chr1 23598998 23599136 -219065217 + L2 LINE L2 3142 3267 -5 183 80 0 0 chr1 23599312 23599337 -219065016 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 2158 109 7 7 chr1 23599388 23599691 -219064662 + AluSx SINE Alu 1 303 -9 708 305 71 4 chr1 23599700 23599753 -219064600 - MIR SINE MIR -2 260 212 2067 133 0 13 chr1 23599753 23600062 -219064291 - AluSx SINE Alu -7 305 1 708 305 71 4 chr1 23600062 23600247 -219064106 - MIR SINE MIR -50 212 6 2568 79 20 14 chr1 23600895 23601250 -219063103 - L1PA13 LINE L1 0 6163 5807 273 352 67 43 chr1 23601473 23601683 -219062670 - MIR SINE MIR -46 216 2 245 360 68 31 chr1 23601700 23601861 -219062492 - MIR SINE MIR -44 218 52 772 221 149 11 chr1 23602038 23602219 -219062134 + MER3 DNA MER1_type 4 209 0 192 292 62 15 chr1 23602244 23602309 -219062044 - MIR SINE MIR -170 92 25 279 228 68 0 chr1 23602575 23602661 -219061692 - MIR SINE MIR -62 146 66 200 276 295 0 chr1 23603076 23603181 -219061172 + MIR3 SINE MIR 69 204 -4 227 267 221 0 chr1 23603190 23603276 -219061077 + MIR SINE MIR 35 139 -69 352 294 73 7 chr1 23603787 23603923 -219060430 + MIR SINE MIR 2 146 -116 813 166 43 6 chr1 23604658 23604821 -219059532 - L1MB3 LINE L1 -3 6180 6012 408 222 38 48 chr1 23604822 23604995 -219059358 - L1MB2 LINE L1 -135 6049 5890 1863 134 16 29 chr1 23605000 23605306 -219059047 - AluJb SINE Alu -9 303 2 1273 273 140 12 chr1 23605459 23606054 -219058299 - L2 LINE L2 -19 3294 2617 442 182 101 0 chr1 23606054 23606153 -219058200 + Cheshire DNA MER1_type 657 765 -1655 521 262 77 32 chr1 23606185 23606406 -219057947 - L2 LINE L2 -787 2527 2297 223 318 34 23 chr1 23606717 23606805 -219057548 + MIR3 SINE MIR 109 197 -11 399 218 95 28 chr1 23607056 23607173 -219057180 + MER106B DNA MER1_type 28 136 -923 2282 112 0 0 chr1 23607173 23607485 -219056868 + AluSx SINE Alu 1 312 0 399 218 95 28 chr1 23607485 23607555 -219056798 + MER106B DNA MER1_type 136 1057 -2 260 299 88 48 chr1 23607607 23607754 -219056599 - L2 LINE L2 -47 3225 3073 279 399 29 7 chr1 23608046 23608184 -219056169 + MIR3 SINE MIR 2 142 -66 445 201 158 14 chr1 23608267 23608406 -219055947 - MIR SINE MIR -55 207 49 339 245 43 58 chr1 23608914 23609053 -219055300 + L2 LINE L2 2913 3049 -223 398 276 89 0 chr1 23609210 23609333 -219055020 - MIR SINE MIR -98 164 31 493 301 111 65 chr1 23609397 23609532 -219054821 + L2 LINE L2 3020 3147 -166 2146 114 0 3 chr1 23609532 23609829 -219054524 + AluSx SINE Alu 1 296 -16 493 301 111 65 chr1 23609829 23609972 -219054381 + L2 LINE L2 3147 3311 -2 359 314 105 0 chr1 23610019 23610172 -219054181 - MIR SINE MIR -75 187 19 287 294 22 0 chr1 23610702 23610794 -219053559 + MIR3 SINE MIR 101 194 -14 486 235 8 0 chr1 23610803 23610922 -219053431 - MER3 DNA MER1_type 0 2624 2505 381 206 0 0 chr1 23610923 23610996 -219053357 - MER3 DNA MER1_type -97 112 40 270 325 0 0 chr1 23611340 23611420 -219052933 - MIR SINE MIR -32 230 151 1085 158 0 0 chr1 23611424 23611588 -219052765 + FRAM SINE Alu 1 164 -12 24 0 0 0 chr1 23611608 23611632 -219052721 + AT_rich Low_complexity Low_complexity 1 24 0 226 229 16 16 chr1 23611634 23611695 -219052658 - MIR SINE MIR -104 158 98 414 0 0 0 chr1 23611756 23611802 -219052551 + (TG)n Simple_repeat Simple_repeat 2 47 0 325 347 44 49 chr1 23612368 23612593 -219051760 - L1MEd LINE L1 -4941 1178 955 541 198 6 6 chr1 23612594 23612751 -219051602 + CT-rich Low_complexity Low_complexity 1 157 0 841 191 4 4 chr1 23612772 23613324 -219051029 + CT-rich Low_complexity Low_complexity 1 552 0 390 291 199 15 chr1 23613875 23614071 -219050282 + MIR SINE MIR 28 259 -3 2153 91 0 3 chr1 23614189 23614475 -219049878 - AluSx SINE Alu -27 285 1 310 222 0 0 chr1 23614475 23614538 -219049815 - MIR SINE MIR -38 224 162 837 162 15 0 chr1 23614540 23614676 -219049677 - AluSq/x SINE Alu -174 138 1 389 187 13 0 chr1 23614676 23614751 -219049602 - MIR SINE MIR -99 163 88 189 239 22 0 chr1 23615575 23615621 -219048732 - L2 LINE L2 -1 3312 3266 349 215 86 11 chr1 23616347 23616440 -219047913 - MIR SINE MIR -66 142 43 354 263 21 100 chr1 23617844 23618084 -219046269 - L2 LINE L2 -169 3103 2883 248 319 0 0 chr1 23618991 23619063 -219045290 + MIR SINE MIR 50 121 -141 419 218 50 10 chr1 23619318 23619419 -219044934 + MIR SINE MIR 16 120 -88 235 288 144 15 chr1 23619518 23619650 -219044703 + L2 LINE L2 3121 3269 -3 330 26 0 0 chr1 23620208 23620231 -219044122 + (CA)n Simple_repeat Simple_repeat 1 62 0 330 26 0 0 chr1 23620231 23620270 -219044083 + (CA)n Simple_repeat Simple_repeat 1 39 0 434 272 56 31 chr1 23620563 23620725 -219043628 - MIR SINE MIR -74 188 23 541 265 38 43 chr1 23621100 23621285 -219043068 + MIR SINE MIR 15 198 -64 279 208 0 0 chr1 23621354 23621407 -219042946 - MIR SINE MIR -90 118 66 484 287 34 106 chr1 23621869 23622284 -219042069 - L2 LINE L2 -513 2801 2417 185 235 118 0 chr1 23623125 23623176 -219041177 + L3 LINE CR1 1518 1574 -3 2133 120 0 7 chr1 23623256 23623555 -219040798 + AluSq SINE Alu 1 297 -16 365 317 78 14 chr1 23623644 23623786 -219040567 + L2 LINE L2 3163 3313 0 287 172 26 86 chr1 23623830 23623865 -219040488 + Charlie5 DNA MER1_type 2472 2508 -77 2351 105 0 0 chr1 23623865 23624178 -219040175 - AluSq SINE Alu 0 313 1 287 172 26 86 chr1 23624178 23624258 -219040095 + Charlie5 DNA MER1_type 2508 2580 -5 480 237 35 9 chr1 23624962 23625076 -219039277 - MIR SINE MIR -46 216 100 281 306 99 8 chr1 23625457 23625578 -219038775 - L2 LINE L2 0 3272 3141 1811 146 19 44 chr1 23626436 23626751 -219037602 - AluJb SINE Alu -5 307 1 264 269 99 14 chr1 23626904 23627045 -219037308 + Charlie8 DNA MER1_type 69 221 -2196 315 317 25 17 chr1 23627114 23627234 -219037119 - L3 LINE CR1 -45 1532 1412 450 313 130 19 chr1 23627307 23627515 -219036838 + MIR SINE MIR 20 250 -12 365 268 41 0 chr1 23627971 23628068 -219036285 - MIR SINE MIR -82 180 80 180 0 0 0 chr1 23628637 23628657 -219035696 + (CGG)n Simple_repeat Simple_repeat 2 21 0 39 38 0 0 chr1 23628787 23628840 -219035513 + GC_rich Low_complexity Low_complexity 1 53 0 266 212 25 25 chr1 23628864 23628982 -219035371 + (CGG)n Simple_repeat Simple_repeat 1 118 0 270 248 29 86 chr1 23631661 23631766 -219032587 - MIR SINE MIR -69 193 95 274 268 43 73 chr1 23633046 23633210 -219031143 - MIR3 SINE MIR -11 197 39 243 248 291 21 chr1 23633347 23633488 -219030865 - MIR SINE MIR -76 186 8 521 325 50 10 chr1 23633645 23633845 -219030508 + MIR SINE MIR 53 260 -2 186 346 62 0 chr1 23633863 23633944 -219030409 - L2 LINE L2 -11 3261 3176 607 259 17 7 chr1 23634012 23634193 -219030160 - MIR SINE MIR -58 150 2 325 118 15 44 chr1 23634612 23634680 -219029673 - MIR SINE MIR -71 137 72 532 294 68 4 chr1 23635103 23635337 -219029016 + MIR SINE MIR 11 261 -1 366 326 0 0 chr1 23635420 23635595 -219028758 + (CA)n Simple_repeat Simple_repeat 2 176 0 510 289 15 43 chr1 23636464 23636678 -219027675 - MIR SINE MIR -45 217 6 234 258 15 15 chr1 23636883 23636949 -219027404 - MER5A DNA MER1_type -77 112 47 183 345 45 55 chr1 23636929 23636950 -219027403 + L3b LINE CR1 1469 1489 -94 * 1671 152 85 0 chr1 23636950 23637233 -219027120 + AluJb SINE Alu 1 307 -5 183 345 45 55 chr1 23637233 23637321 -219027032 + L3b LINE CR1 1489 1577 -6 275 247 90 11 chr1 23637440 23637529 -219026824 + MIR SINE MIR 63 158 -104 263 290 29 80 chr1 23637782 23637919 -219026434 - MIR SINE MIR -62 146 69 397 293 27 14 chr1 23638473 23638620 -219025733 - MIR SINE MIR -12 250 102 2337 68 0 3 chr1 23639166 23639461 -219024892 - AluY SINE Alu -17 294 1 4384 166 39 15 chr1 23639478 23640142 -219024211 - L1MB3 LINE L1 0 6183 5486 2173 113 0 0 chr1 23640142 23640433 -219023920 - AluSx SINE Alu -21 291 1 4384 166 39 15 chr1 23640433 23640750 -219023603 - L1MB3 LINE L1 -697 5486 5178 289 344 0 11 chr1 23640929 23641022 -219023331 - L2 LINE L2 -558 2756 2665 183 280 40 27 chr1 23641270 23641345 -219023008 + L2 LINE L2 3198 3273 -40 1013 198 39 0 chr1 23642412 23642619 -219021734 - MIR SINE MIR -35 227 13 438 219 0 0 chr1 23642942 23643047 -219021306 + (TG)n Simple_repeat Simple_repeat 1 105 0 680 225 0 3 chr1 23643071 23643434 -219020919 + (TG)n Simple_repeat Simple_repeat 1 361 0 431 275 0 11 chr1 23643497 23643679 -219020674 + (TG)n Simple_repeat Simple_repeat 1 180 0 522 275 2 0 chr1 23643692 23644204 -219020149 + (TG)n Simple_repeat Simple_repeat 1 513 0 250 167 42 0 chr1 23644209 23644257 -219020096 + (TATG)n Simple_repeat Simple_repeat 4 53 0 274 154 0 0 chr1 23644259 23644311 -219020042 + MER4-int LTR ERV1 1111 1162 -5436 411 289 0 0 chr1 23644314 23644487 -219019866 + (TG)n Simple_repeat Simple_repeat 2 174 0 * 499 243 0 17 chr1 23644458 23644639 -219019714 + (TATG)n Simple_repeat Simple_repeat 1 178 0 260 292 15 0 chr1 23644639 23644704 -219019649 + (CGTG)n Simple_repeat Simple_repeat 3 68 0 2355 86 3 3 chr1 23645308 23645621 -219018732 - AluSq SINE Alu 0 313 1 425 279 118 0 chr1 23645880 23646016 -219018337 - MIR SINE MIR -52 210 59 329 239 133 62 chr1 23646256 23646416 -219017937 - MIR SINE MIR -74 188 4 270 330 9 19 chr1 23646679 23646785 -219017568 - MIR SINE MIR -56 152 48 410 226 85 9 chr1 23647750 23647856 -219016497 - MIR SINE MIR -65 143 30 311 320 123 0 chr1 23648666 23648788 -219015565 + MIR SINE MIR 44 180 -82 469 284 75 40 chr1 23648794 23648995 -219015358 - MIR SINE MIR -33 229 22 345 314 31 106 chr1 23650006 23650429 -219013924 - L2 LINE L2 -27 3245 2855 190 303 123 8 chr1 23650698 23650820 -219013533 + L2 LINE L2 3137 3272 0 211 341 114 0 chr1 23650998 23651130 -219013223 + MER5A DNA MER1_type 38 184 -5 331 339 18 0 chr1 23651422 23651531 -219012822 + MIR SINE MIR 45 155 -107 572 204 70 14 chr1 23654647 23654789 -219009564 + MIR SINE MIR 102 251 -11 300 267 105 19 chr1 23655112 23655217 -219009136 - MIR SINE MIR -119 143 30 234 361 14 0 chr1 23655287 23655359 -219008994 - L2 LINE L2 0 3313 3241 458 321 211 22 chr1 23655500 23656039 -219008314 + L2 LINE L2 1689 2329 -985 976 96 0 0 chr1 23656290 23656415 -219007938 + AluJo/FLAM SINE Alu 1 125 -187 1719 165 14 0 chr1 23656417 23656702 -219007651 - AluJb SINE Alu -22 290 2 327 370 118 14 chr1 23656831 23657247 -219007106 + L2 LINE L2 2830 3288 -25 340 318 62 4 chr1 23657493 23657679 -219006674 - MIR SINE MIR -62 146 1 2152 109 0 0 chr1 23659019 23659313 -219005040 - AluSg SINE Alu -16 294 1 969 114 8 0 chr1 23659318 23659450 -219004903 - AluSq/x SINE Alu -179 133 1 733 213 53 12 chr1 23659561 23659730 -219004623 + MER5A DNA MER1_type 14 189 0 378 351 40 17 chr1 23659902 23660076 -219004277 + MIR SINE MIR 41 218 -44 543 322 57 9 chr1 23660596 23660807 -219003546 - MIR SINE MIR -32 230 10 261 299 13 0 chr1 23660889 23660966 -219003387 - MIR SINE MIR -64 144 67 390 245 58 32 chr1 23661720 23661809 -219002544 - MER117 DNA MER1_type -37 160 63 1929 128 14 0 chr1 23661809 23662140 -219002213 - AluSx SINE Alu 0 335 1 390 245 58 32 chr1 23662140 23662204 -219002149 - MER117 DNA MER1_type -134 63 2 416 291 14 80 chr1 23663697 23663910 -219000443 + MIR SINE MIR 51 249 -13 881 180 0 6 chr1 23664780 23664958 -218999395 + GA-rich Low_complexity Low_complexity 2 178 0 223 118 78 0 chr1 23664971 23665022 -218999331 + GA-rich Low_complexity Low_complexity 3 57 0 859 151 0 27 chr1 23665041 23665226 -218999127 + GA-rich Low_complexity Low_complexity 1 180 0 894 146 23 7 chr1 23665253 23665557 -218998796 + GA-rich Low_complexity Low_complexity 1 309 0 310 302 60 17 chr1 23667928 23668044 -218996309 - MIR3 SINE MIR -47 161 41 204 333 173 7 chr1 23669542 23669692 -218994661 - MIR SINE MIR -54 208 34 231 322 75 98 chr1 23669838 23670133 -218994220 - L2 LINE L2 -4 3268 2981 1149 315 72 22 chr1 23670196 23671280 -218993073 + L1ME3 LINE L1 4507 5673 -489 1381 237 101 14 chr1 23671280 23671698 -218992655 - LTR16A1 LTR ERVL -2 455 2 1149 315 72 22 chr1 23671698 23671988 -218992365 + L1ME3 LINE L1 5673 5947 -215 549 114 23 0 chr1 23672252 23672340 -218992013 + L1MC2 LINE L1 6253 6342 -2 790 319 62 3 chr1 23672529 23672867 -218991486 + L2 LINE L2 2502 2859 -455 1396 197 72 14 chr1 23672879 23673048 -218991305 - AluJb SINE Alu -5 307 113 262 0 26 26 chr1 23673048 23673087 -218991266 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1396 197 72 14 chr1 23673087 23673207 -218991146 - AluJb SINE Alu -199 113 1 260 363 101 56 chr1 23673235 23673662 -218990691 + L2 LINE L2 2809 3254 -18 418 303 42 14 chr1 23673745 23673887 -218990466 + MIR SINE MIR 84 229 -33 814 304 9 5 chr1 23674739 23674953 -218989400 - MIR SINE MIR -13 249 35 1857 170 0 13 chr1 23675147 23675583 -218988770 - AluJo SINE Alu 0 436 5 771 174 0 30 chr1 23675864 23675996 -218988357 + AluJb SINE Alu 7 134 -178 234 0 0 0 chr1 23676021 23676047 -218988306 + (A)n Simple_repeat Simple_repeat 1 26 0 228 256 35 12 chr1 23676050 23676136 -218988217 + (TG)n Simple_repeat Simple_repeat 2 89 0 273 233 17 0 chr1 23676535 23676595 -218987758 - MIR SINE MIR -108 154 94 409 335 147 20 chr1 23677154 23677447 -218986906 + L3 LINE CR1 1119 1448 -129 687 256 26 21 chr1 23677520 23677711 -218986642 - MIR SINE MIR -64 198 7 426 326 156 18 chr1 23678121 23678345 -218986008 + MIR SINE MIR 8 262 0 387 315 0 0 chr1 23678855 23678966 -218985387 + MIR SINE MIR 80 190 -72 403 288 19 0 chr1 23679482 23679642 -218984711 + (TCTG)n Simple_repeat Simple_repeat 3 165 0 2257 107 0 0 chr1 23680321 23680621 -218983732 - AluSc SINE Alu -9 300 1 198 315 55 14 chr1 23680689 23680762 -218983591 + L2 LINE L2 3193 3268 -4 206 333 43 0 chr1 23680767 23680836 -218983517 + L2 LINE L2 3195 3266 -6 222 37 0 0 chr1 23680850 23680877 -218983476 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 533 229 0 0 chr1 23681248 23681369 -218982984 - MIR SINE MIR -63 145 40 537 226 15 30 chr1 23681453 23681586 -218982767 + L2 LINE L2 3183 3313 0 290 288 73 9 chr1 23681741 23681868 -218982485 - MIR SINE MIR -65 143 9 468 333 48 14 chr1 23682371 23682581 -218981772 - MIR SINE MIR -33 229 13 326 345 6 51 chr1 23682664 23682841 -218981512 + MIR3 SINE MIR 16 184 -24 241 208 19 0 chr1 23682981 23683034 -218981319 - MIR SINE MIR -81 127 74 221 233 0 9 chr1 23683112 23683188 -218981165 + T-rich Low_complexity Low_complexity 1 75 0 344 292 62 0 chr1 23684203 23684316 -218980037 + MIR SINE MIR 25 144 -118 202 268 0 18 chr1 23684403 23684459 -218979894 + C-rich Low_complexity Low_complexity 5 59 0 375 219 37 0 chr1 23684475 23684557 -218979796 + MIR SINE MIR 108 192 -70 437 215 47 116 chr1 23684693 23684865 -218979488 - L1ME3 LINE L1 -35 6127 5968 2265 96 0 0 chr1 23685759 23686085 -218978268 - AluSx SINE Alu 0 326 1 307 254 0 0 chr1 23686142 23686209 -218978144 - MIR SINE MIR -61 147 81 211 236 170 38 chr1 23686336 23686442 -218977911 - MIR3 SINE MIR -74 134 15 2036 120 0 0 chr1 23686582 23686890 -218977463 - AluSx SINE Alu 0 308 1 790 323 5 0 chr1 23687632 23687855 -218976498 - MIR SINE MIR 0 262 39 1535 155 28 38 chr1 23688072 23688230 -218976123 - AluJo SINE Alu -19 293 138 2030 125 13 0 chr1 23688230 23688533 -218975820 - AluSq SINE Alu -4 309 3 1535 155 28 38 chr1 23688533 23688665 -218975688 - AluJo SINE Alu -174 138 6 923 94 0 8 chr1 23688763 23688878 -218975475 + AluSx SINE Alu 1 116 -197 405 0 0 0 chr1 23688878 23688923 -218975430 + (CTA)n Simple_repeat Simple_repeat 1 45 0 923 94 0 8 chr1 23688923 23688935 -218975418 + AluSx SINE Alu 116 127 -186 2050 144 48 129 chr1 23689267 23689510 -218974843 + L1MB3 LINE L1 5684 5860 -323 1815 89 12 4 chr1 23689510 23689756 -218974597 + AluSx SINE Alu 2 249 -63 2050 144 48 129 chr1 23689756 23690055 -218974298 + L1MB3 LINE L1 5860 6182 -1 606 278 37 37 chr1 23690174 23690365 -218973988 + MIR SINE MIR 8 198 -64 555 307 24 28 chr1 23690362 23690574 -218973779 - MIR SINE MIR -1 261 51 * 384 274 92 7 chr1 23691064 23691245 -218973108 - MLT1I LTR MaLR 0 428 269 207 269 104 30 chr1 23692566 23692700 -218971653 + MER5A DNA MER1_type 24 167 -22 208 213 98 16 chr1 23692716 23692777 -218971576 - MIR3 SINE MIR -53 155 90 350 141 248 50 chr1 23693100 23693221 -218971132 - MER53 DNA DNA -44 145 1 285 286 92 8 chr1 23693226 23693345 -218971008 + MIR SINE MIR 89 217 -45 2095 110 0 3 chr1 23693529 23693821 -218970532 + AluSc SINE Alu 1 291 -18 933 145 0 7 chr1 23693821 23693998 -218970355 + AluSx SINE Alu 133 308 0 504 273 55 12 chr1 23694005 23694170 -218970183 + MIR SINE MIR 72 243 -19 219 114 0 0 chr1 23694683 23694718 -218969635 + (T)n Simple_repeat Simple_repeat 1 35 0 292 357 0 0 chr1 23694850 23694962 -218969391 - MIR SINE MIR -110 152 41 1427 220 81 63 chr1 23695440 23695935 -218968418 + L1ME3 LINE L1 5653 6156 -6 2021 122 7 0 chr1 23696054 23696349 -218968004 - AluSp SINE Alu -16 297 1 728 254 14 5 chr1 23697070 23697279 -218967074 + LTR37B LTR ERV1 6 216 -252 681 258 3 97 chr1 23697306 23697604 -218966749 + LTR37B LTR ERV1 197 466 -2 204 250 75 12 chr1 23697637 23697717 -218966636 + MIR SINE MIR 62 146 -62 2299 86 6 13 chr1 23697816 23698130 -218966223 + AluSx SINE Alu 1 312 0 2110 110 0 13 chr1 23698151 23698450 -218965903 + AluSx SINE Alu 1 295 -17 417 231 12 142 chr1 23698470 23698639 -218965714 - MIR3 SINE MIR -27 181 35 276 341 65 0 chr1 23698975 23699098 -218965255 + L3 LINE CR1 1346 1476 -101 8667 176 69 51 chr1 23699187 23700908 -218963445 - MER52A LTR ERV1 0 1755 4 1883 145 0 7 chr1 23700908 23701204 -218963149 - AluJb SINE Alu -6 306 13 358 305 61 30 chr1 23701250 23701461 -218962892 - MIR SINE MIR -28 234 16 214 94 0 0 chr1 23702370 23702402 -218961951 + L2 LINE L2 3277 3308 -5 283 246 18 18 chr1 23702517 23702631 -218961722 + (TG)n Simple_repeat Simple_repeat 1 114 0 466 254 58 0 chr1 23703291 23703437 -218960916 + MIR SINE MIR 43 197 -65 377 189 40 0 chr1 23703815 23703889 -218960464 - MIR SINE MIR -113 149 73 2095 118 0 3 chr1 23704886 23705191 -218959162 - AluSq SINE Alu -9 304 1 730 251 72 14 chr1 23705240 23705447 -218958906 + MIR SINE MIR 44 262 0 220 234 104 13 chr1 23705446 23705523 -218958830 - MIR SINE MIR -62 200 117 * 2343 82 0 13 chr1 23705575 23705891 -218958462 + AluSx SINE Alu 1 312 0 185 291 36 18 chr1 23705916 23705971 -218958382 - MIR SINE MIR -195 67 12 186 43 0 0 chr1 23706398 23706421 -218957932 + (CA)n Simple_repeat Simple_repeat 1 23 0 226 273 20 20 chr1 23707045 23707144 -218957209 - MIR SINE MIR -74 134 36 333 229 95 9 chr1 23708382 23708487 -218955866 + MIR SINE MIR 76 189 -73 342 0 0 0 chr1 23708574 23708612 -218955741 + (CA)n Simple_repeat Simple_repeat 2 39 0 201 39 0 0 chr1 23709264 23709290 -218955063 + (CTG)n Simple_repeat Simple_repeat 3 28 0 753 249 73 10 chr1 23709786 23709991 -218954362 + MIR SINE MIR 42 259 -3 344 256 67 11 chr1 23710585 23710675 -218953678 - MIR SINE MIR -87 175 81 208 299 15 0 chr1 23710924 23710991 -218953362 - MIR SINE MIR -111 151 84 406 244 111 15 chr1 23711253 23711388 -218952965 + MIR3 SINE MIR 11 158 -50 281 269 43 0 chr1 23711406 23711499 -218952854 - Charlie8 DNA MER1_type -2140 277 181 383 204 0 11 chr1 23711519 23711607 -218952746 - MER69A DNA AcHobo 0 177 91 728 250 104 5 chr1 23711621 23711841 -218952512 + L1MD2 LINE L1 6084 6325 -34 266 208 10 52 chr1 23711842 23711938 -218952415 - MER69A DNA AcHobo -56 121 30 364 244 45 51 chr1 23711949 23712105 -218952248 - Charlie8 DNA MER1_type -2250 167 13 331 269 19 10 chr1 23712152 23712256 -218952097 - MIR SINE MIR -69 139 35 206 170 0 38 chr1 23712371 23712424 -218951929 + CT-rich Low_complexity Low_complexity 2 52 0 273 273 11 11 chr1 23713701 23713789 -218950564 + (TGAA)n Simple_repeat Simple_repeat 1 88 0 427 191 0 0 chr1 23713793 23713877 -218950476 - MIR SINE MIR -1 261 178 258 304 0 0 chr1 23713924 23714003 -218950350 + L2 LINE L2 3181 3259 -54 283 303 84 22 chr1 23714440 23714618 -218949735 + L2 LINE L2 2871 3059 -213 192 250 23 0 chr1 23714877 23714921 -218949432 + L2 LINE L2 3133 3177 -95 279 203 0 0 chr1 23714992 23715051 -218949302 + (CA)n Simple_repeat Simple_repeat 2 60 0 313 333 23 0 chr1 23715074 23715161 -218949192 - L1MC4 LINE L1 -1339 6703 6615 312 227 13 27 chr1 23715139 23715214 -218949139 - L1MCa LINE L1 -4358 2068 1995 * 203 233 0 33 chr1 23715214 23715274 -218949079 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 609 242 3 3 chr1 23715274 23715621 -218948732 + (CA)n Simple_repeat Simple_repeat 1 347 0 418 217 171 19 chr1 23716404 23716579 -218947774 - MIR SINE MIR -53 155 4 2158 110 0 16 chr1 23716645 23716955 -218947398 + AluSx SINE Alu 1 305 -7 325 259 167 0 chr1 23717429 23717537 -218946816 + L2 LINE L2 3181 3306 -7 384 283 20 0 chr1 23717542 23717641 -218946712 + MIR3 SINE MIR 106 206 -2 292 288 136 15 chr1 23717955 23718087 -218946266 - MIR SINE MIR -93 169 22 247 378 18 0 chr1 23718560 23718671 -218945682 + MER5A DNA MER1_type 3 115 -74 235 270 40 0 chr1 23718761 23718835 -218945518 + MIR SINE MIR 44 120 -88 288 262 60 12 chr1 23719236 23719320 -218945033 - MIR SINE MIR -141 121 34 557 264 96 0 chr1 23719741 23719919 -218944434 - MIR SINE MIR -3 259 65 185 382 0 0 chr1 23720020 23720096 -218944257 - MIR SINE MIR -2 260 185 446 300 56 14 chr1 23720168 23720381 -218943972 + MIR SINE MIR 34 253 -9 346 244 32 62 chr1 23720740 23720886 -218943467 + MIR SINE MIR 51 188 -63 399 306 27 20 chr1 23721073 23721220 -218943133 + L3 LINE CR1 1347 1494 -83 187 349 36 12 chr1 23721365 23721394 -218942959 + L3 LINE CR1 1478 1505 -72 3142 153 19 75 chr1 23721394 23721592 -218942761 + L1MB5 LINE L1 5572 5780 -394 860 146 0 0 chr1 23721592 23721722 -218942631 + FLAM_A SINE Alu 1 130 -3 3142 153 19 75 chr1 23721722 23721764 -218942589 + L1MB5 LINE L1 5780 5823 -351 4532 168 81 6 chr1 23721764 23722567 -218941786 - MER21B LTR ERV1 0 863 1 3142 153 19 75 chr1 23722567 23722964 -218941389 + L1MB5 LINE L1 5823 6174 0 187 349 36 12 chr1 23722964 23723017 -218941336 + L3 LINE CR1 1505 1562 -15 281 278 42 0 chr1 23723196 23723268 -218941085 + MIR SINE MIR 81 155 -107 737 269 57 92 chr1 23723388 23723897 -218940456 + L2 LINE L2 2823 3313 0 785 168 6 0 chr1 23723900 23724079 -218940274 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1021 130 2 12 chr1 23724095 23724594 -218939759 + (TGGA)n Simple_repeat Simple_repeat 1 493 0 273 372 54 0 chr1 23724954 23725100 -218939253 - MIR SINE MIR -63 145 42 327 255 96 0 chr1 23725165 23725259 -218939094 + MIR SINE MIR 90 192 -70 381 320 129 0 chr1 23725308 23725533 -218938820 - MIR SINE MIR -5 257 4 366 284 37 37 chr1 23725541 23725703 -218938650 + MER117 DNA MER1_type 7 168 -29 324 281 33 25 chr1 23725831 23725952 -218938401 - MIR3 SINE MIR -2 206 85 190 221 52 78 chr1 23726634 23726711 -218937642 + L2 LINE L2 3198 3272 0 290 221 115 10 chr1 23726714 23726818 -218937535 + L2 LINE L2 3158 3272 0 326 339 107 0 chr1 23726889 23727066 -218937287 - MIR SINE MIR -21 241 46 226 245 94 38 chr1 23727229 23727335 -218937018 + L2 LINE L2 2646 2757 -557 452 287 25 49 chr1 23728101 23728323 -218936030 - MIR SINE MIR -42 220 5 2007 144 0 3 chr1 23728829 23729135 -218935218 - AluJb SINE Alu -7 305 1 268 227 15 15 chr1 23729467 23729533 -218934820 - MLT1K LTR MaLR -7 581 516 263 188 10 16 chr1 23729858 23729955 -218934398 - MER5A DNA MER1_type 0 189 29 882 130 0 22 chr1 23729956 23730094 -218934259 - FLAM_C SINE Alu -8 135 1 235 294 141 0 chr1 23730143 23730235 -218934118 - MIR SINE MIR -111 151 47 347 244 157 0 chr1 23730285 23730400 -218933953 - MIR SINE MIR -21 241 109 413 322 169 6 chr1 23730625 23730802 -218933551 - MIR SINE MIR -36 226 21 238 344 33 0 chr1 23730841 23730931 -218933422 + MIR SINE MIR 12 104 -158 378 276 19 0 chr1 23730982 23731087 -218933266 - L1ME LINE L1 -440 5681 5575 656 199 143 0 chr1 23731327 23731488 -218932865 + MER5A DNA MER1_type 6 189 0 1697 195 43 0 chr1 23731496 23731819 -218932534 - MER58B DNA MER1_type 0 341 5 756 284 70 0 chr1 23732374 23732575 -218931778 + MIR SINE MIR 48 262 0 514 265 154 12 chr1 23732617 23732779 -218931574 - MER5A DNA MER1_type -1 188 4 210 37 0 0 chr1 23733116 23733143 -218931210 + (CA)n Simple_repeat Simple_repeat 2 28 0 352 311 40 27 chr1 23733304 23733452 -218930901 + MIR3 SINE MIR 10 159 -49 209 305 17 0 chr1 23734013 23734072 -218930281 - MIR SINE MIR -53 209 150 645 147 0 0 chr1 23734174 23734283 -218930070 + (TTCC)n Simple_repeat Simple_repeat 4 112 0 2039 154 0 0 chr1 23734290 23734602 -218929751 - AluSx SINE Alu 0 312 1 2024 139 0 0 chr1 23734712 23735006 -218929347 - AluJb SINE Alu -18 294 1 518 268 132 15 chr1 23735181 23735386 -218928967 + MIR SINE MIR 33 261 -1 1911 161 0 0 chr1 23735398 23735702 -218928651 + AluJo SINE Alu 1 304 -8 181 182 0 0 chr1 23735714 23735747 -218928606 + MIR SINE MIR 222 254 -8 332 180 100 10 chr1 23736301 23736401 -218927952 + MIR SINE MIR 80 188 -74 386 190 51 0 chr1 23736632 23736711 -218927642 + MIR SINE MIR 60 142 -66 375 183 28 0 chr1 23736764 23736835 -218927518 + MIR3 SINE MIR 117 189 -19 692 288 107 0 chr1 23737238 23737453 -218926900 - MIR SINE MIR -7 255 18 665 295 24 0 chr1 23737463 23737694 -218926659 - MIR SINE MIR -1 261 26 518 319 27 22 chr1 23737958 23738143 -218926210 - MIR SINE MIR -17 245 60 1271 202 32 16 chr1 23739700 23739952 -218924401 + MIR SINE MIR 3 258 -4 312 306 174 21 chr1 23740106 23740616 -218923737 + L2 LINE L2 2465 3044 -228 933 169 103 0 chr1 23741008 23741203 -218923150 + MER20 DNA MER1_type 1 215 -4 2106 114 0 7 chr1 23741323 23741622 -218922731 - AluSx SINE Alu -15 297 1 244 243 88 40 chr1 23741871 23742019 -218922334 + MIR3 SINE MIR 33 187 -21 339 220 124 0 chr1 23742689 23742784 -218921569 - MIR SINE MIR -45 163 58 251 150 50 33 chr1 23742887 23742947 -218921406 - MIR SINE MIR -63 145 85 405 294 117 6 chr1 23743020 23743200 -218921153 + MIR SINE MIR 63 262 0 369 223 0 0 chr1 23743509 23743603 -218920750 + (CA)n Simple_repeat Simple_repeat 2 95 0 323 193 11 0 chr1 23743717 23743805 -218920548 + (CA)n Simple_repeat Simple_repeat 2 90 0 680 161 0 32 chr1 23743817 23744003 -218920350 + (CA)n Simple_repeat Simple_repeat 1 180 0 618 180 8 25 chr1 23744016 23744294 -218920059 + (CA)n Simple_repeat Simple_repeat 1 273 0 713 185 6 0 chr1 23744314 23744487 -218919866 + (CA)n Simple_repeat Simple_repeat 1 174 0 189 281 0 18 chr1 23744513 23744570 -218919783 - MIR SINE MIR -67 141 86 311 352 14 0 chr1 23744836 23744978 -218919375 + CT-rich Low_complexity Low_complexity 1 144 0 393 277 15 23 chr1 23745516 23745646 -218918707 + MIR SINE MIR 18 146 -62 280 290 48 32 chr1 23745745 23745869 -218918484 - MIR3 SINE MIR -34 174 49 1985 125 3 0 chr1 23746213 23746508 -218917845 - AluSx SINE Alu -16 296 1 240 250 404 0 chr1 23746509 23746613 -218917740 - MIR SINE MIR -4 258 113 434 296 22 45 chr1 23746892 23747071 -218917282 - L2 LINE L2 -1 3312 3138 891 300 64 0 chr1 23747071 23747321 -218917032 - MLT1C LTR MaLR -2 465 200 407 227 34 25 chr1 23747345 23747464 -218916889 - MIR SINE MIR -118 144 25 1272 291 87 43 chr1 23747543 23748049 -218916304 + MLT1K LTR MaLR 15 542 -46 2264 96 0 0 chr1 23748229 23748521 -218915832 + AluSx SINE Alu 1 292 -20 294 29 0 0 chr1 23748761 23748796 -218915557 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 217 366 23 19 chr1 23749343 23749559 -218914794 - L2 LINE L2 -799 2515 2299 242 289 108 56 chr1 23749645 23749894 -218914459 + L2 LINE L2 2854 3115 -157 633 259 204 5 chr1 23749930 23750146 -218914207 + MIR SINE MIR 3 261 -1 278 203 162 0 chr1 23751136 23751210 -218913143 + Charlie1 DNA MER1_type 7 92 -2669 * 725 176 5 37 chr1 23751208 23751395 -218912958 + Charlie1 DNA MER1_type 2464 2644 -117 1213 143 11 0 chr1 23751395 23751584 -218912769 - AluSg/x SINE Alu -5 305 115 328 224 71 12 chr1 23751615 23751700 -218912653 + Charlie1 DNA MER1_type 2672 2761 0 246 260 79 94 chr1 23751713 23751840 -218912513 + L2 LINE L2 3189 3313 0 520 286 94 82 chr1 23751870 23752283 -218912070 + L2 LINE L2 2836 3253 -19 303 288 0 113 chr1 23752393 23752553 -218911800 + MIR SINE MIR 72 213 -49 412 226 0 144 chr1 23752586 23752633 -218911720 - MIR3 SINE MIR -5 203 151 2137 123 0 3 chr1 23752633 23752941 -218911412 + AluSg SINE Alu 1 307 -3 412 226 0 144 chr1 23752941 23753039 -218911314 - MIR3 SINE MIR -57 151 79 291 323 113 0 chr1 23753139 23753272 -218911081 + MIR3 SINE MIR 33 180 -28 329 285 80 58 chr1 23753273 23753585 -218910768 + L1ME4a LINE L1 5363 5681 -483 286 315 55 20 chr1 23753650 23753796 -218910557 + L1ME4a LINE L1 5783 5933 -188 394 192 41 0 chr1 23753819 23753892 -218910461 - Tigger4(Zombi) DNA MER2_type 0 2731 2656 2342 48 0 7 chr1 23753937 23754227 -218910126 + AluY SINE Alu 14 301 -10 1049 169 0 0 chr1 23754227 23754405 -218909948 + AluSg/x SINE Alu 132 309 -1 277 270 50 20 chr1 23754887 23754987 -218909366 - MIR3 SINE MIR -2 206 104 315 179 18 0 chr1 23754987 23755043 -218909310 + MER115 DNA AcHobo 1 57 -636 427 220 40 0 chr1 23755046 23755146 -218909207 - MER5C DNA MER1_type 0 324 221 2340 90 3 0 chr1 23755147 23755457 -218908896 + AluSp SINE Alu 2 312 -1 1146 173 20 28 chr1 23755463 23755711 -218908642 + L1MB2 LINE L1 5925 6170 -1 181 272 239 0 chr1 23755913 23756005 -218908348 - MER5C DNA MER1_type -208 116 3 2509 205 83 42 chr1 23756005 23756605 -218907748 + Zaphod DNA AcHobo 58 682 -3349 * 2757 188 57 3 chr1 23756586 23757219 -218907134 + Zaphod DNA AcHobo 3284 3950 -81 857 213 6 6 chr1 23757219 23757388 -218906965 - AluJb SINE Alu -9 303 135 410 204 10 0 chr1 23757389 23757487 -218906866 + (CATA)n Simple_repeat Simple_repeat 2 100 0 583 145 0 0 chr1 23757495 23757578 -218906775 - AluS SINE Alu -227 85 3 336 152 165 0 chr1 23757580 23757659 -218906694 + Zaphod DNA AcHobo 3940 4031 0 188 188 0 0 chr1 23757709 23757741 -218906612 - L3 LINE CR1 -1226 351 320 621 119 0 0 chr1 23757855 23757939 -218906414 + AluSx SINE Alu 2 85 -228 421 185 12 12 chr1 23757939 23758020 -218906333 - MER3 DNA MER1_type -128 81 1 516 189 27 14 chr1 23758031 23758179 -218906174 - Charlie5 DNA MER1_type -30 2582 2433 1327 104 0 63 chr1 23758197 23758438 -218905915 + AluSx SINE Alu 85 310 0 503 295 58 6 chr1 23758493 23758649 -218905704 + MIR SINE MIR 40 203 -59 2340 209 52 15 chr1 23758656 23759191 -218905162 - MLT1F1 LTR MaLR -12 555 1 534 247 103 0 chr1 23759291 23759437 -218904916 - MIR SINE MIR -52 210 50 2070 110 7 0 chr1 23759537 23759827 -218904526 + AluSg SINE Alu 1 292 -18 286 302 21 10 chr1 23760223 23760319 -218904034 + MIR SINE MIR 23 119 -143 1077 178 14 33 chr1 23760440 23760653 -218903700 - MER3 DNA MER1_type 0 209 1 1195 163 30 75 chr1 23760664 23760745 -218903608 - MER33 DNA MER1_type -2264 321 238 2113 120 7 0 chr1 23760745 23761054 -218903299 + AluSx SINE Alu 1 311 -1 1195 163 30 75 chr1 23761054 23761151 -218903202 - MER33 DNA MER1_type -2347 238 138 819 113 7 71 chr1 23761151 23761292 -218903061 + FLAM_C SINE Alu 2 133 0 1195 163 30 75 chr1 23761292 23761443 -218902910 - MER33 DNA MER1_type -2447 138 6 426 306 0 30 chr1 23761461 23761595 -218902758 + MIR SINE MIR 22 151 -111 1144 171 18 142 chr1 23761759 23761928 -218902425 - AluYb8 SINE Alu -11 297 109 1723 137 7 0 chr1 23761928 23762198 -218902155 - AluSq SINE Alu 0 313 42 1144 171 18 142 chr1 23762198 23762216 -218902137 - AluYb8 SINE Alu -199 109 90 2269 92 0 0 chr1 23762216 23762511 -218901842 - AluSx SINE Alu -17 295 1 1144 171 18 142 chr1 23762511 23762661 -218901692 - AluYb8 SINE Alu -218 90 1 205 309 48 12 chr1 23762707 23762791 -218901562 + L2 LINE L2 3123 3209 -63 300 303 46 9 chr1 23763052 23763161 -218901192 + MIR3 SINE MIR 68 180 -28 286 328 46 23 chr1 23763257 23763388 -218900965 + MIR SINE MIR 128 261 -1 339 130 0 0 chr1 23763407 23763461 -218900892 + (TG)n Simple_repeat Simple_repeat 2 55 0 771 252 38 9 chr1 23763606 23763816 -218900537 - MIR SINE MIR -45 217 2 5540 48 4 6 chr1 23763938 23764622 -218899731 + L1PA8 LINE L1 5483 6165 -7 512 241 8 23 chr1 23765447 23765580 -218898773 + MIR3 SINE MIR 71 201 -7 2060 126 7 0 chr1 23765580 23765874 -218898479 + AluSq SINE Alu 1 296 -17 210 268 93 31 chr1 23766091 23766188 -218898165 + MIR3 SINE MIR 13 115 -93 1983 148 0 16 chr1 23766456 23766773 -218897580 - AluJo SINE Alu 0 312 1 195 146 0 0 chr1 23767041 23767082 -218897271 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 312 297 59 8 chr1 23767631 23767749 -218896604 - MIR3 SINE MIR -75 133 10 396 247 78 13 chr1 23767785 23767938 -218896415 + MIR SINE MIR 35 197 -56 283 228 119 10 chr1 23768176 23768277 -218896076 - L2 LINE L2 -1 3271 3160 970 195 6 0 chr1 23768430 23768594 -218895759 + FRAM SINE Alu 1 165 -1 180 250 0 77 chr1 23768596 23768648 -218895705 - MIR SINE MIR -133 129 82 193 384 17 23 chr1 23768941 23769113 -218895240 - L2 LINE L2 -423 2891 2721 591 259 79 0 chr1 23769230 23769419 -218894934 - MIR SINE MIR -17 245 42 349 353 0 8 chr1 23769893 23770015 -218894338 + L1ME4a LINE L1 5795 5915 -206 300 333 52 30 chr1 23770047 23770182 -218894171 + HAL1b LINE L1 1204 1341 -7 255 222 14 42 chr1 23770258 23770330 -218894023 + L2 LINE L2 3020 3089 -183 1433 154 77 35 chr1 23770405 23770716 -218893637 + MER33 DNA MER1_type 1 324 0 353 256 12 0 chr1 23770752 23770834 -218893519 - MIR SINE MIR -82 126 44 6603 45 2 0 chr1 23770837 23771623 -218892730 + L1PA5 LINE L1 5360 6147 -7 466 232 20 21 chr1 23771971 23772116 -218892237 - MIR3 SINE MIR -23 185 37 762 329 121 9 chr1 23772338 23772767 -218891586 + L2 LINE L2 2827 3303 -10 251 204 56 0 chr1 23772861 23772915 -218891438 + MIR SINE MIR 87 143 -65 183 234 26 78 chr1 23773148 23773225 -218891128 - L2 LINE L2 -91 3181 3109 292 182 18 0 chr1 23773597 23773652 -218890701 + MIR SINE MIR 87 142 -66 408 272 140 7 chr1 23773696 23773898 -218890455 + MIR SINE MIR 18 248 -14 185 244 0 0 chr1 23774007 23774048 -218890305 + L2 LINE L2 3265 3305 -8 46 68 0 0 chr1 23775690 23775778 -218888575 + GC_rich Low_complexity Low_complexity 1 88 0 52 58 0 0 chr1 23775889 23775976 -218888377 + GC_rich Low_complexity Low_complexity 1 87 0 199 137 20 20 chr1 23776046 23776097 -218888256 + (CGGG)n Simple_repeat Simple_repeat 3 53 0 35 92 0 0 chr1 23776144 23776242 -218888111 + GC_rich Low_complexity Low_complexity 1 98 0 39 22 0 0 chr1 23776403 23776449 -218887904 + GC_rich Low_complexity Low_complexity 1 46 0 27 49 0 0 chr1 23776495 23776536 -218887817 + GC_rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr1 23776709 23776742 -218887611 + GC_rich Low_complexity Low_complexity 1 33 0 244 294 140 9 chr1 23777189 23777296 -218887057 - MIR SINE MIR -71 137 45 260 255 69 20 chr1 23778303 23778405 -218885948 + MIR3 SINE MIR 68 174 -34 246 293 0 85 chr1 23778418 23778524 -218885829 + MIR SINE MIR 101 197 -65 214 347 36 31 chr1 23779496 23779689 -218884664 - L2 LINE L2 -431 2883 2690 239 286 65 26 chr1 23779750 23779827 -218884526 + L2 LINE L2 3132 3211 -61 614 303 110 0 chr1 23779838 23780092 -218884261 + L2 LINE L2 3011 3292 -21 191 302 151 47 chr1 23780790 23780896 -218883457 + MIR SINE MIR 14 130 -132 1985 125 0 23 chr1 23781338 23781642 -218882711 - AluSx SINE Alu -15 297 1 415 285 53 13 chr1 23782518 23782669 -218881684 + MIR SINE MIR 73 229 -33 478 277 36 24 chr1 23782812 23783053 -218881300 + MIR SINE MIR 21 261 -1 2323 71 3 10 chr1 23783380 23783690 -218880663 - AluSq SINE Alu -4 309 2 723 254 57 14 chr1 23783703 23783912 -218880441 - MIR SINE MIR -32 230 13 285 283 73 15 chr1 23784195 23784344 -218880009 - MIR SINE MIR -61 201 41 694 207 67 0 chr1 23784363 23784527 -218879826 + Charlie8 DNA MER1_type 73 247 -2170 426 347 7 7 chr1 23784616 23784763 -218879590 + MIR3 SINE MIR 46 192 -16 918 289 128 7 chr1 23784857 23785265 -218879088 - MLT1H1 LTR MaLR -23 532 76 187 250 0 125 chr1 23785636 23785740 -218878613 + L2 LINE L2 11 101 -3213 * 208 267 209 0 chr1 23785727 23785813 -218878540 + L2 LINE L2 3209 3312 -1 386 297 0 0 chr1 23785939 23786050 -218878303 + MIR SINE MIR 84 194 -68 424 268 21 0 chr1 23786508 23786605 -218877748 - Charlie8 DNA MER1_type -2163 254 156 1680 188 10 7 chr1 23786611 23786919 -218877434 - AluJb SINE Alu -3 309 1 180 0 0 0 chr1 23786956 23786976 -218877377 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1106 156 0 0 chr1 23786976 23787143 -218877210 - AluSg/x SINE Alu -37 273 107 867 154 0 0 chr1 23787164 23787300 -218877053 - FLAM_C SINE Alu -7 136 1 324 254 100 9 chr1 23787300 23787410 -218876943 - Charlie8 DNA MER1_type -2294 123 4 268 204 191 39 chr1 23787440 23787543 -218876810 - MIR SINE MIR -65 143 39 * 343 329 48 24 chr1 23787522 23787689 -218876664 - L3 LINE CR1 -189 1388 1218 302 301 103 19 chr1 23787703 23787859 -218876494 + MIR3 SINE MIR 2 170 -38 * 466 257 86 37 chr1 23787834 23788021 -218876332 - L2 LINE L2 -215 3057 2862 510 244 74 40 chr1 23788626 23788802 -218875551 + MIR SINE MIR 20 201 -61 457 296 24 0 chr1 23788938 23789063 -218875290 - MIR SINE MIR -101 161 34 344 208 42 10 chr1 23789102 23789198 -218875155 - L1MC4 LINE L1 -16 8026 7928 186 43 0 0 chr1 23789240 23789263 -218875090 + (TG)n Simple_repeat Simple_repeat 2 24 0 258 347 135 24 chr1 23789463 23789633 -218874720 - MIR SINE MIR -48 214 26 469 287 23 6 chr1 23790206 23790380 -218873973 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 268 271 12 0 chr1 23791000 23791085 -218873268 + (TCCA)n Simple_repeat Simple_repeat 3 88 0 270 200 11 21 chr1 23791196 23791291 -218873062 + CT-rich Low_complexity Low_complexity 1 94 0 373 274 49 61 chr1 23791326 23791412 -218872941 - MIR SINE MIR -18 244 159 2381 93 0 3 chr1 23791412 23791725 -218872628 - AluSx SINE Alu 0 312 1 373 274 49 61 chr1 23791725 23791802 -218872551 - MIR SINE MIR -103 159 83 265 300 143 0 chr1 23791895 23792035 -218872318 - L2 LINE L2 -272 3000 2841 332 264 22 0 chr1 23792571 23792662 -218871691 - MIR SINE MIR -71 137 45 209 146 55 0 chr1 23792732 23792787 -218871566 + T-rich Low_complexity Low_complexity 3 60 0 210 37 0 0 chr1 23792787 23792814 -218871539 + (A)n Simple_repeat Simple_repeat 1 27 0 885 138 0 8 chr1 23792815 23792945 -218871408 - FLAM_C SINE Alu -3 130 2 320 236 0 0 chr1 23793013 23793085 -218871268 + MIR SINE MIR 86 157 -105 331 331 84 21 chr1 23793086 23793228 -218871125 + L2 LINE L2 3148 3298 -15 189 0 0 0 chr1 23793230 23793251 -218871102 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 662 289 10 29 chr1 23793265 23793469 -218870884 - MIR SINE MIR -13 249 50 620 307 123 45 chr1 23794393 23794918 -218869435 + L2 LINE L2 2700 3272 0 186 264 7 129 chr1 23795155 23795295 -218869058 - MIR SINE MIR -91 171 49 620 237 227 8 chr1 23795445 23795996 -218868357 - L2 LINE L2 -96 3217 2548 601 278 13 0 chr1 23796379 23796530 -218867823 + MIR SINE MIR 28 180 -82 2188 104 0 7 chr1 23796561 23796870 -218867483 + AluSg SINE Alu 1 307 -3 281 297 61 74 chr1 23797075 23797223 -218867130 + MIR SINE MIR 70 215 -47 268 170 0 0 chr1 23797930 23797977 -218866376 - MIR SINE MIR -71 137 91 231 36 0 0 chr1 23798044 23798072 -218866281 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2077 108 0 0 chr1 23798074 23798352 -218866001 - AluSq SINE Alu -35 278 1 345 226 48 0 chr1 23798363 23798447 -218865906 - MIR3 SINE MIR -49 159 72 616 267 36 6 chr1 23798597 23798762 -218865591 - MIR SINE MIR -88 174 5 205 385 0 0 chr1 23799303 23799386 -218864967 - MIR SINE MIR -70 192 110 2163 106 3 3 chr1 23799423 23799725 -218864628 - AluSx SINE Alu -10 302 1 215 313 138 0 chr1 23799928 23800008 -218864345 - MIR SINE MIR -14 248 158 1674 166 0 49 chr1 23800145 23800470 -218863883 + AluJo SINE Alu 2 310 -2 541 239 63 7 chr1 23800930 23801072 -218863281 + MIR SINE MIR 9 158 -104 254 142 0 53 chr1 23802007 23802120 -218862233 + (GGGGA)n Simple_repeat Simple_repeat 5 111 0 498 250 70 53 chr1 23802136 23802364 -218861989 + MER113 DNA MER1_type? 249 480 -41 731 226 20 35 chr1 23802742 23802941 -218861412 + MIR SINE MIR 35 230 -32 208 321 25 0 chr1 23803003 23803084 -218861269 - MIR SINE MIR -6 256 174 471 292 36 7 chr1 23804568 23804705 -218859648 + MIR SINE MIR 2 142 -120 1543 185 4 8 chr1 23804729 23804994 -218859359 + AluJb SINE Alu 1 264 -48 183 233 0 0 chr1 23805117 23805160 -218859193 + L2 LINE L2 3034 3076 -196 661 320 28 10 chr1 23805277 23805518 -218858835 - MIR SINE MIR -6 256 3 1642 187 11 0 chr1 23805584 23805867 -218858486 + AluJo SINE Alu 1 286 -26 195 129 0 0 chr1 23805871 23805902 -218858451 + (TG)n Simple_repeat Simple_repeat 2 32 0 208 260 20 10 chr1 23805905 23806005 -218858348 + (TA)n Simple_repeat Simple_repeat 1 101 0 291 36 71 18 chr1 23806101 23806157 -218858196 + T-rich Low_complexity Low_complexity 4 62 0 1610 158 62 0 chr1 23806163 23806436 -218857917 - AluJb SINE Alu -9 303 14 279 273 115 21 chr1 23806487 23806655 -218857698 - MIR SINE MIR 0 262 71 281 277 50 50 chr1 23806942 23807043 -218857310 - MIR SINE MIR -115 147 47 256 271 0 24 chr1 23807427 23807512 -218856841 + MIR3 SINE MIR 74 156 -52 276 298 73 51 chr1 23807515 23807693 -218856660 + MER113 DNA MER1_type? 1 182 -339 838 209 50 10 chr1 23807720 23807921 -218856432 + MIR SINE MIR 15 223 -39 914 228 79 0 chr1 23807967 23808195 -218856158 + MER113 DNA MER1_type? 218 463 -58 620 267 33 12 chr1 23808486 23808708 -218855645 + MIR SINE MIR 37 262 0 219 333 74 0 chr1 23808824 23808905 -218855448 + L2 LINE L2 3202 3288 -25 279 79 0 0 chr1 23808907 23808945 -218855408 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 2084 121 3 0 chr1 23809345 23809642 -218854711 + AluSx SINE Alu 1 298 -14 635 280 48 31 chr1 23810033 23810260 -218854093 - MIR SINE MIR -29 233 4 231 167 0 37 chr1 23810346 23810400 -218853953 - L2 LINE L2 0 3313 3262 29 0 0 0 chr1 23810650 23810679 -218853674 + AT_rich Low_complexity Low_complexity 1 29 0 936 182 0 6 chr1 23810688 23810847 -218853506 - AluJo/FRAM SINE Alu -21 291 134 2182 123 0 0 chr1 23810847 23811155 -218853198 - AluSx SINE Alu -4 308 1 453 250 13 0 chr1 23811949 23812069 -218852284 - MER20B DNA MER1_type -21 198 74 197 307 14 14 chr1 23812273 23812413 -218851940 + L2 LINE L2 2872 3011 -261 287 297 0 27 chr1 23812432 23812543 -218851810 + MIR SINE MIR 58 165 -97 264 229 157 0 chr1 23813141 23813211 -218851142 + L2 LINE L2 3232 3312 -1 354 362 66 0 chr1 23813465 23813617 -218850736 - MIR SINE MIR -97 165 4 242 269 84 8 chr1 23813649 23813768 -218850585 - MIR SINE MIR -116 146 19 1280 163 28 67 chr1 23814121 23814404 -218849949 - AluJo SINE Alu -2 310 39 1805 168 0 7 chr1 23814533 23814831 -218849522 - AluJo SINE Alu -16 296 1 197 265 108 36 chr1 23814831 23814914 -218849439 - MIR SINE MIR -5 257 169 486 220 0 108 chr1 23814981 23815103 -218849250 + MIR SINE MIR 73 170 -92 1993 139 0 7 chr1 23815103 23815412 -218848941 - AluSx SINE Alu -5 307 1 486 220 0 108 chr1 23815412 23815475 -218848878 + MIR SINE MIR 170 238 -24 2194 220 59 42 chr1 23815820 23815907 -218848446 + L1ME3 LINE L1 5562 5646 -516 2426 119 37 99 chr1 23815907 23816172 -218848181 - Tigger2a DNA MER2_type -2274 434 209 1319 166 11 120 chr1 23816172 23816522 -218847831 + AluJo SINE Alu 1 312 0 2426 119 37 99 chr1 23816522 23816719 -218847634 - Tigger2a DNA MER2_type -2499 209 1 2194 220 59 42 chr1 23816719 23817222 -218847131 + L1ME3 LINE L1 5646 6162 0 321 267 193 7 chr1 23817240 23817390 -218846963 + MIR SINE MIR 70 247 -15 582 310 70 41 chr1 23817708 23818251 -218846102 - L2 LINE L2 -23 3249 2691 409 209 12 0 chr1 23818650 23818736 -218845617 - MIR3 SINE MIR -41 167 81 253 289 10 29 chr1 23818916 23819020 -218845333 - MIR SINE MIR 0 262 161 473 221 0 0 chr1 23819480 23819575 -218844778 + MIR SINE MIR 60 154 -108 895 248 60 16 chr1 23819627 23819877 -218844476 + MIR SINE MIR 2 262 0 2364 86 0 0 chr1 23820017 23820319 -218844034 - AluSg SINE Alu -8 302 1 43 0 0 0 chr1 23820394 23820437 -218843916 + AT_rich Low_complexity Low_complexity 1 43 0 2689 23 0 0 chr1 23820576 23820883 -218843470 - AluY SINE Alu -4 307 1 277 313 31 69 chr1 23821280 23821440 -218842913 + MIR3 SINE MIR 44 197 -11 186 349 0 0 chr1 23821469 23821535 -218842818 + L2 LINE L2 3203 3268 -4 939 94 35 0 chr1 23821535 23821706 -218842647 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 222 235 74 0 chr1 23821764 23821845 -218842508 + L2 LINE L2 2919 3005 -308 302 303 12 0 chr1 23821845 23821957 -218842396 + MIR SINE MIR 39 152 -62 224 189 0 0 chr1 23822743 23822789 -218841564 - MIR SINE MIR -56 152 106 346 271 133 13 chr1 23823537 23823688 -218840665 - MIR SINE MIR -74 188 20 309 231 0 15 chr1 23823709 23823774 -218840579 + MER5A DNA MER1_type 21 84 -105 234 258 18 126 chr1 23823711 23823878 -218840475 - MER5B DNA MER1_type -13 165 17 * 469 181 23 99 chr1 23823938 23824109 -218840244 + L1ME4a LINE L1 5964 6121 0 320 229 67 38 chr1 23824200 23824305 -218840048 + MIR SINE MIR 90 197 -65 225 245 0 0 chr1 23824491 23824540 -218839813 - MIR SINE MIR -63 145 97 287 257 71 0 chr1 23825075 23825188 -218839165 + MIR SINE MIR 33 153 -55 276 346 60 16 chr1 23825243 23825428 -218838925 + MIR SINE MIR 69 261 -1 526 212 18 0 chr1 23825844 23825957 -218838396 + MIR SINE MIR 69 183 -79 2213 214 47 20 chr1 23826331 23826821 -218837532 - MLT1D LTR MaLR -2 503 1 411 288 135 6 chr1 23826946 23827109 -218837244 - MIR SINE MIR -9 253 70 1992 100 50 0 chr1 23827130 23827411 -218836942 + AluSx SINE Alu 2 296 -16 2155 112 0 0 chr1 23827930 23828233 -218836120 + AluSx SINE Alu 1 303 -9 454 245 158 33 chr1 23828852 23829036 -218835317 + MIR SINE MIR 56 262 0 273 148 19 19 chr1 23829215 23829269 -218835084 - MIR SINE MIR -92 170 117 473 274 37 46 chr1 23830055 23830287 -218834066 + MIR SINE MIR 27 258 -4 424 272 8 16 chr1 23830834 23830959 -218833394 + MIR SINE MIR 20 143 -119 1574 166 13 23 chr1 23831073 23831380 -218832973 + AluJo SINE Alu 1 304 -8 326 272 37 120 chr1 23831426 23831643 -218832710 + L2 LINE L2 2886 3084 -188 227 306 34 102 chr1 23831996 23832067 -218832286 + L2 LINE L2 3174 3231 -82 1945 137 0 17 chr1 23832067 23832366 -218831987 - AluSx SINE Alu -11 301 8 227 306 34 102 chr1 23832366 23832441 -218831912 + L2 LINE L2 3231 3310 -3 283 319 11 11 chr1 23832441 23832532 -218831821 + (TGGA)n Simple_repeat Simple_repeat 2 92 0 186 246 0 0 chr1 23832753 23832814 -218831539 + (TGGG)n Simple_repeat Simple_repeat 4 64 0 353 331 12 25 chr1 23832816 23832976 -218831377 + (TGGA)n Simple_repeat Simple_repeat 4 161 0 409 265 10 0 chr1 23833318 23833420 -218830933 + MIR SINE MIR 41 143 -119 219 139 0 0 chr1 23833539 23833575 -218830778 + (TGGG)n Simple_repeat Simple_repeat 4 39 0 223 291 51 0 chr1 23833575 23833654 -218830699 + MIR SINE MIR 138 220 -42 386 322 48 44 chr1 23833811 23834084 -218830269 - L2 LINE L2 -56 3216 2943 280 315 147 0 chr1 23834209 23834393 -218829960 + MIR SINE MIR 37 247 -15 211 306 45 36 chr1 23834545 23834656 -218829697 + MIR SINE MIR 86 197 -65 455 282 38 8 chr1 23835339 23835470 -218828883 + MIR SINE MIR 37 171 -91 321 284 129 0 chr1 23835551 23835667 -218828686 + MIR SINE MIR 2 132 -130 430 171 18 90 chr1 23835797 23835908 -218828445 - MIR SINE MIR -70 192 90 181 278 83 68 chr1 23836313 23836446 -218827907 + L2 LINE L2 2713 2847 -467 535 320 128 5 chr1 23836487 23836690 -218827663 + MIR SINE MIR 2 229 -33 477 320 55 62 chr1 23836781 23837056 -218827297 + L2 LINE L2 2998 3270 -2 227 230 52 126 chr1 23837063 23837198 -218827155 - L2 LINE L2 -199 3073 2949 270 261 29 0 chr1 23837451 23837520 -218826833 - L2 LINE L2 -33 3239 3169 408 264 29 0 chr1 23837590 23837703 -218826650 - MIR SINE MIR -63 145 30 551 292 116 5 chr1 23837842 23838058 -218826295 + MIR SINE MIR 20 259 -3 267 282 94 28 chr1 23838793 23839006 -218825347 + L2 LINE L2 2830 3056 -216 467 266 22 35 chr1 23839270 23839496 -218824857 - MER113 DNA MER1_type? -297 224 2 354 361 79 41 chr1 23839552 23839893 -218824460 - L2 LINE L2 -38 3234 2881 390 272 39 0 chr1 23839939 23840042 -218824311 + MIR SINE MIR 78 184 -78 203 222 0 37 chr1 23840608 23840662 -218823691 - MIR SINE MIR -111 151 100 1674 121 0 16 chr1 23840673 23840944 -218823409 - AluSx SINE Alu 0 312 49 259 300 0 22 chr1 23841003 23841093 -218823260 - MIR3 SINE MIR -117 91 4 262 272 37 25 chr1 23841480 23841561 -218822792 + MIR SINE MIR 72 153 -55 423 293 86 0 chr1 23842298 23842438 -218821915 + MIR3 SINE MIR 8 159 -49 387 342 75 35 chr1 23842589 23842788 -218821565 + L2 LINE L2 3063 3269 -3 2449 59 0 0 chr1 23843705 23844011 -218820342 + AluY SINE Alu 1 306 -5 344 310 62 16 chr1 23844323 23844452 -218819901 - MIR SINE MIR -8 254 120 * 556 301 57 21 chr1 23844451 23844669 -218819684 - MIR SINE MIR -6 256 21 713 285 77 9 chr1 23844762 23844983 -218819370 + MIR SINE MIR 26 261 -1 492 231 45 8 chr1 23845660 23845794 -218818559 - MIR3 SINE MIR -47 161 23 236 243 40 40 chr1 23845838 23845912 -218818441 + MIR SINE MIR 81 154 -108 184 250 40 40 chr1 23846219 23846295 -218818058 - L2 LINE L2 -292 2980 2905 237 333 50 10 chr1 23846539 23846638 -218817715 + L2 LINE L2 3091 3193 -79 192 292 0 0 chr1 23846939 23846987 -218817366 + L2 LINE L2 3139 3186 -86 726 277 67 32 chr1 23848177 23848462 -218815891 - MLT1I LTR MaLR -65 344 50 452 224 327 6 chr1 23848484 23848649 -218815704 - MIR SINE MIR -44 218 1 279 195 126 11 chr1 23848653 23848740 -218815613 - MER113 DNA MER1_type? -422 99 3 332 302 48 8 chr1 23848756 23848952 -218815401 + MIR SINE MIR 4 257 -5 533 360 135 20 chr1 23849679 23850079 -218814274 - L2 LINE L2 -1 3271 2826 1334 190 209 38 chr1 23850094 23850136 -218814217 - MLT1F1 LTR MaLR 0 567 534 1785 140 49 25 chr1 23850136 23850422 -218813931 + AluJo SINE Alu 4 296 -16 1334 190 209 38 chr1 23850422 23850867 -218813486 - MLT1F1 LTR MaLR -33 534 1 340 239 31 85 chr1 23851251 23851381 -218812972 - MER5A DNA MER1_type -1 188 66 2113 135 3 0 chr1 23851414 23851718 -218812635 - AluSx SINE Alu -7 305 1 502 265 176 56 chr1 23852248 23852572 -218811781 - L2 LINE L2 0 3313 2951 478 302 12 6 chr1 23852733 23852905 -218811448 - L2 LINE L2 -211 3061 2889 535 282 92 11 chr1 23853628 23853802 -218810551 + MIR SINE MIR 29 216 -46 1287 273 25 48 chr1 23853890 23854136 -218810217 - L1ME4a LINE L1 -3 6118 5868 841 144 0 58 chr1 23854136 23854275 -218810078 - FLAM_C SINE Alu 0 133 3 1287 273 25 48 chr1 23854275 23854679 -218809674 - L1ME4a LINE L1 -253 5868 5483 371 106 15 0 chr1 23855220 23855286 -218809067 + (TCCA)n Simple_repeat Simple_repeat 3 69 0 221 272 75 150 chr1 23855365 23855711 -218808642 - L2 LINE L2 -12 3260 2941 313 323 169 27 chr1 23855877 23856137 -218808216 - L2 LINE L2 0 3272 2976 571 274 109 0 chr1 23856376 23856551 -218807802 - MIR SINE MIR -29 233 40 212 305 9 48 chr1 23856858 23856963 -218807390 - L2 LINE L2 -172 3100 3000 182 274 262 0 chr1 23857149 23857233 -218807120 - MIR3 SINE MIR -46 162 57 351 294 160 21 chr1 23857236 23857423 -218806930 - MIR SINE MIR -29 233 21 284 257 119 10 chr1 23857802 23857903 -218806450 - MIR SINE MIR -62 146 35 234 316 84 65 chr1 23857939 23858094 -218806259 - MIR3 SINE MIR -19 189 32 234 0 0 0 chr1 23858127 23858153 -218806200 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 390 252 48 40 chr1 23858296 23858487 -218805866 - MIR3 SINE MIR -65 143 2 668 297 14 24 chr1 23858710 23858922 -218805431 - L2 LINE L2 -11 3302 3093 216 260 210 10 chr1 23859263 23859363 -218804990 - MIR SINE MIR -123 139 20 501 298 110 11 chr1 23859424 23859615 -218804738 - MIR SINE MIR -13 249 40 487 263 59 12 chr1 23859662 23859825 -218804528 - MIR SINE MIR -32 176 38 1071 222 154 41 chr1 23859855 23860297 -218804056 + L2 LINE L2 1820 2311 -1003 941 281 65 17 chr1 23860345 23860835 -218803518 + L2 LINE L2 2729 3302 -11 248 335 23 21 chr1 23861334 23861460 -218802893 + MIR SINE MIR 59 145 -63 204 316 86 22 chr1 23861725 23861864 -218802489 + MIR SINE MIR 6 153 -109 648 330 14 5 chr1 23862012 23862227 -218802126 + MIR SINE MIR 36 252 -10 439 241 65 0 chr1 23862275 23862383 -218801970 - MIR SINE MIR -109 153 39 231 88 0 0 chr1 23863347 23863381 -218800972 + (TG)n Simple_repeat Simple_repeat 1 34 0 284 310 78 0 chr1 23863748 23863864 -218800489 + MIR SINE MIR 24 148 -114 446 307 55 20 chr1 23864034 23864236 -218800117 - MIR SINE MIR -25 237 29 331 296 0 0 chr1 23865240 23865328 -218799025 - MIR SINE MIR -58 150 63 192 250 153 14 chr1 23865533 23865605 -218798748 - L2 LINE L2 -37 3235 3154 260 346 45 0 chr1 23865666 23865799 -218798554 - L2 LINE L2 -146 3126 2988 392 245 79 72 chr1 23865970 23866023 -218798330 + L1MC4 LINE L1 6564 6615 -1427 2006 137 3 0 chr1 23866023 23866316 -218798037 + AluJb SINE Alu 1 294 -18 392 245 79 72 chr1 23866316 23866401 -218797952 + L1MC4 LINE L1 6615 6703 -1339 376 333 0 0 chr1 23866335 23866425 -218797928 - L1MC4 LINE L1 -1339 6703 6614 * 1072 172 0 6 chr1 23866425 23866599 -218797754 + AluJo SINE Alu 125 297 -15 222 371 50 3 chr1 23866692 23866820 -218797533 - MIR SINE MIR -59 149 47 208 387 9 0 chr1 23866858 23866964 -218797389 + L2 LINE L2 3166 3272 0 186 43 0 0 chr1 23866970 23866993 -218797360 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 375 314 5 43 chr1 23867409 23867594 -218796759 + CT-rich Low_complexity Low_complexity 3 180 0 203 152 0 0 chr1 23868401 23868434 -218795919 + GA-rich Low_complexity Low_complexity 3 35 0 360 226 235 0 chr1 23868660 23868775 -218795578 - MIR3 SINE MIR -47 161 20 664 201 59 3 chr1 23868851 23869012 -218795341 - MIR SINE MIR -11 197 22 276 306 108 9 chr1 23869023 23869134 -218795219 + L2 LINE L2 3192 3313 0 375 121 0 0 chr1 23869134 23869192 -218795161 + (CGGA)n Simple_repeat Simple_repeat 2 59 0 317 333 203 11 chr1 23869950 23870127 -218794226 - MIR SINE MIR -14 248 38 187 326 100 65 chr1 23870257 23870487 -218793866 - L2 LINE L2 -84 3188 2951 2150 123 7 0 chr1 23870515 23870825 -218793528 + AluSx SINE Alu 1 312 0 306 267 20 30 chr1 23870950 23871051 -218793302 + L2 LINE L2 3172 3271 -1 990 205 43 35 chr1 23871299 23871553 -218792800 - MIR SINE MIR -2 260 5 574 214 107 19 chr1 23872206 23872365 -218791988 - MIR SINE MIR -70 192 20 312 331 8 8 chr1 23872605 23872726 -218791627 - L2 LINE L2 -215 3057 2937 360 252 118 0 chr1 23873120 23873239 -218791114 + MIR3 SINE MIR 73 205 -3 519 232 29 14 chr1 23873657 23873795 -218790558 + MIR3 SINE MIR 23 162 -46 326 250 53 97 chr1 23874365 23874420 -218789933 + MIR3 SINE MIR 11 67 -195 1733 185 3 0 chr1 23874420 23874718 -218789635 + AluJo SINE Alu 1 299 -13 326 250 53 97 chr1 23874718 23874860 -218789493 + MIR3 SINE MIR 67 204 -58 311 170 0 0 chr1 23875318 23875371 -218788982 + MIR SINE MIR 103 155 -107 467 297 114 6 chr1 23875778 23875953 -218788400 - MIR SINE MIR -34 228 35 293 295 48 9 chr1 23876331 23876436 -218787917 + MIR3 SINE MIR 77 185 -23 2161 103 17 0 chr1 23876555 23876857 -218787496 + AluSq SINE Alu 1 307 -6 411 304 76 0 chr1 23877153 23877324 -218787029 - MIR SINE MIR -6 256 73 397 229 74 41 chr1 23878007 23878129 -218786224 - MIR SINE MIR -63 145 20 425 299 32 32 chr1 23878603 23878757 -218785596 + MIR3 SINE MIR 17 170 -38 263 310 0 23 chr1 23879456 23879543 -218784810 - MIR SINE MIR -85 123 39 627 237 28 47 chr1 23879939 23880150 -218784203 - MIR SINE MIR -55 207 1 203 284 40 0 chr1 23880696 23880770 -218783583 + MIR SINE MIR 51 127 -81 529 320 113 49 chr1 23880915 23881576 -218782777 + L2 LINE L2 2455 3155 -117 346 293 35 9 chr1 23931764 23931880 -218732473 + MIR3 SINE MIR 42 160 -48 476 212 40 0 chr1 23932041 23932140 -218732213 + MER5A DNA MER1_type 7 109 -80 554 249 85 42 chr1 23932205 23932370 -218731983 + MER5B DNA MER1_type 1 172 -6 1181 204 58 23 chr1 23932519 23932650 -218731703 - MER4E LTR ERV1 0 766 641 2050 145 7 3 chr1 23932650 23932954 -218731399 - AluSx SINE Alu -5 307 3 1181 204 58 23 chr1 23932954 23933170 -218731183 - MER4E LTR ERV1 -125 641 407 1001 245 68 13 chr1 23933483 23933919 -218730434 - L2 LINE L2 -139 3174 2708 941 171 0 0 chr1 23933921 23934061 -218730292 - FRAM SINE Alu -22 154 15 908 221 45 21 chr1 23934094 23934384 -218729969 - AluJo SINE Alu -1 301 5 2251 122 0 0 chr1 23934600 23934894 -218729459 + AluSq SINE Alu 1 294 -19 218 296 230 0 chr1 23934935 23935087 -218729266 - MIR SINE MIR -56 206 20 2267 123 0 0 chr1 23935538 23935839 -218728514 + AluSx SINE Alu 1 301 -11 351 119 36 71 chr1 23936361 23936445 -218727908 - MLT1F LTR MaLR -13 529 449 344 286 8 25 chr1 23936607 23936726 -218727627 - MLT1H LTR MaLR -385 164 48 203 316 44 35 chr1 23936825 23936939 -218727414 - MER5A DNA MER1_type -21 168 54 * 272 316 43 17 chr1 23936859 23936976 -218727377 + MER5A DNA MER1_type 64 183 -6 385 292 23 15 chr1 23937136 23937266 -218727087 - MIR SINE MIR -112 150 20 239 271 0 0 chr1 23937447 23937506 -218726847 - L2 LINE L2 -218 3054 2996 344 312 133 43 chr1 23937590 23937936 -218726417 + L2 LINE L2 2887 3263 -9 224 290 120 20 chr1 23938288 23938388 -218725965 - MIR SINE MIR -123 139 30 303 275 61 30 chr1 23938433 23938564 -218725789 - L2 LINE L2 -207 3106 2972 371 335 84 46 chr1 23938711 23938950 -218725403 + MIR SINE MIR 12 259 -3 645 249 90 21 chr1 23938972 23939161 -218725192 - MIR SINE MIR -3 259 58 309 327 106 30 chr1 23939359 23939558 -218724795 + MIR SINE MIR 20 233 -29 2072 268 72 12 chr1 23939582 23939684 -218724669 - MLT1E2 LTR MaLR -4 622 528 2284 94 0 0 chr1 23939684 23939981 -218724372 + AluSg SINE Alu 1 297 -13 2072 268 72 12 chr1 23939981 23940465 -218723888 - MLT1E2 LTR MaLR -98 528 1 389 278 40 24 chr1 23940478 23940604 -218723749 - MIR3 SINE MIR -4 204 77 487 275 107 81 chr1 23941142 23941524 -218722829 - MLT1H LTR MaLR -127 422 31 804 261 177 32 chr1 23941534 23941913 -218722440 - MLT1J LTR MaLR -48 463 30 350 275 44 0 chr1 23941932 23942023 -218722330 - MIR SINE MIR -63 145 51 223 272 250 7 chr1 23942130 23942266 -218722087 - MIR SINE MIR -9 253 85 259 345 134 7 chr1 23942479 23942621 -218721732 + MIR SINE MIR 23 182 -80 501 270 31 37 chr1 23942843 23943006 -218721347 + MER103 DNA DNA 3 164 -2 295 105 35 0 chr1 23943548 23943605 -218720748 + CT-rich Low_complexity Low_complexity 4 62 0 634 243 286 4 chr1 23943612 23944067 -218720286 - L2 LINE L2 -1 3312 2722 230 346 31 0 chr1 23944287 23944417 -218719936 - MIR3 SINE MIR -11 197 64 778 222 33 0 chr1 23945118 23945303 -218719050 + MIR SINE MIR 20 208 -54 378 258 21 0 chr1 23945652 23945745 -218718608 + MIR SINE MIR 31 125 -83 978 191 0 50 chr1 23945746 23945945 -218718408 + MER5A DNA MER1_type 1 189 0 217 289 39 39 chr1 23946366 23946470 -218717883 + L2 LINE L2 3136 3239 -33 451 333 65 19 chr1 23946515 23946731 -218717622 - MIR SINE MIR -33 229 4 481 282 60 8 chr1 23947500 23947695 -218716658 + MIR SINE MIR 18 228 -34 251 292 136 0 chr1 23948033 23948170 -218716183 - MIR3 SINE MIR -12 196 39 298 301 109 6 chr1 23948586 23948753 -218715600 + MIR SINE MIR 45 233 -29 305 333 0 0 chr1 23948846 23948936 -218715417 + MIR3 SINE MIR 69 158 -50 1824 132 45 7 chr1 23948942 23949070 -218715283 + AluJb SINE Alu 4 126 -186 2058 122 11 0 chr1 23949070 23949357 -218714996 + AluSx SINE Alu 3 292 -20 1824 132 45 7 chr1 23949357 23949516 -218714837 + AluJb SINE Alu 126 302 -10 2000 122 7 0 chr1 23949556 23949842 -218714511 - AluSq SINE Alu -25 288 1 241 79 0 0 chr1 23949981 23950019 -218714334 - L1MB5 LINE L1 -8 6166 6129 474 267 17 0 chr1 23950546 23950666 -218713687 + MIR SINE MIR 20 141 -121 530 304 22 7 chr1 23950985 23951195 -218713158 + MIR SINE MIR 17 235 -27 450 358 61 0 chr1 23951709 23951857 -218712496 + L2 LINE L2 3116 3272 0 1151 59 0 0 chr1 23952173 23952309 -218712044 + AluSq/x SINE Alu 1 136 -177 2024 106 67 0 chr1 23952310 23952594 -218711759 + AluSg SINE Alu 3 305 -5 730 284 95 32 chr1 23952641 23952979 -218711374 + L2 LINE L2 2949 3307 -6 452 259 155 6 chr1 23953441 23953634 -218710719 - MIR SINE MIR -11 251 33 685 320 84 34 chr1 23953867 23954556 -218709797 - L2 LINE L2 -3 3269 2557 2392 85 3 0 chr1 23954568 23954875 -218709478 - AluSp SINE Alu -5 308 1 208 250 0 0 chr1 23955893 23955937 -218708416 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2011 93 22 47 chr1 23955969 23956290 -218708063 - AluSq SINE Alu 0 313 1 551 285 20 71 chr1 23956325 23956588 -218707765 - MIR SINE MIR -6 256 8 452 321 109 0 chr1 23956629 23956813 -218707540 - MIR SINE MIR -6 256 53 2018 139 0 0 chr1 23956822 23957109 -218707244 + AluJb SINE Alu 1 287 -25 592 327 132 27 chr1 23957421 23957743 -218706610 - L2 LINE L2 -1 3271 2870 749 195 54 32 chr1 23957743 23957928 -218706425 - MER53 DNA DNA 0 189 1 592 327 132 27 chr1 23957928 23958090 -218706263 - L2 LINE L2 -402 2870 2726 185 203 162 14 chr1 23958225 23958299 -218706054 - L2 LINE L2 -172 3100 3016 215 368 74 12 chr1 23958393 23958556 -218705797 + L2 LINE L2 2885 3057 -215 2778 104 3 0 chr1 23958569 23958943 -218705410 + THE1C LTR MaLR 1 375 0 887 212 56 0 chr1 23958998 23959196 -218705157 - MIR SINE MIR -49 213 5 180 243 100 0 chr1 23959404 23959474 -218704879 + L2 LINE L2 3150 3226 -46 1721 201 0 6 chr1 23959732 23960046 -218704307 - AluJb SINE Alu 0 312 1 185 318 0 32 chr1 23960191 23960254 -218704099 - L2 LINE L2 -63 3209 3149 269 284 0 71 chr1 23960573 23960714 -218703639 - MLT1H LTR MaLR -390 159 29 268 221 132 15 chr1 23961054 23961122 -218703231 - MER91 DNA MER1_type -1 189 120 225 284 37 0 chr1 23961226 23961307 -218703046 + MIR SINE MIR 64 147 -61 444 293 0 0 chr1 23961369 23961485 -218702868 + MER117 DNA MER1_type 68 183 -14 414 319 89 24 chr1 23961546 23961759 -218702594 + MIR SINE MIR 8 234 -28 218 331 111 47 chr1 23962133 23962265 -218702088 - L2 LINE L2 -1 3312 3165 2099 123 7 0 chr1 23962265 23962574 -218701779 + AluSq SINE Alu 1 311 -2 218 331 111 47 chr1 23962574 23962613 -218701740 - L2 LINE L2 -148 3165 3130 470 250 185 20 chr1 23962675 23962875 -218701478 + MIR SINE MIR 30 262 0 * 756 166 94 155 chr1 23962859 23963124 -218701229 - MIR SINE MIR 0 262 14 250 320 53 53 chr1 23963114 23963264 -218701089 - MIR SINE MIR -46 216 67 * 820 317 95 9 chr1 23964465 23964897 -218699456 + L2 LINE L2 2804 3272 0 1658 268 85 12 chr1 23965380 23965455 -218698898 - L2 LINE L2 -14 3299 3231 2067 113 3 0 chr1 23965455 23965767 -218698586 + AluSx SINE Alu 1 313 0 1878 139 0 57 chr1 23965767 23966098 -218698255 + AluJb SINE Alu 1 312 0 1658 268 85 12 chr1 23966098 23966813 -218697540 - L2 LINE L2 -81 3232 2451 2049 92 67 0 chr1 23966879 23967161 -218697192 + AluSp SINE Alu 1 301 -12 2166 111 3 0 chr1 23967169 23967466 -218696887 + AluSp SINE Alu 1 298 -15 2032 146 0 3 chr1 23967660 23967961 -218696392 + AluJb SINE Alu 1 300 -12 2348 89 10 0 chr1 23967961 23968264 -218696089 + AluSx SINE Alu 1 306 -6 427 269 293 0 chr1 23968332 23968499 -218695854 - MIR SINE MIR -16 246 31 213 241 19 0 chr1 23968798 23968852 -218695501 - MIR SINE MIR -71 137 83 615 285 39 34 chr1 23968919 23969126 -218695227 + MIR SINE MIR 34 241 -21 708 261 14 33 chr1 23969133 23969348 -218695005 - MIR SINE MIR -3 259 49 808 246 23 66 chr1 23969662 23969754 -218694599 + MIR SINE MIR 8 102 -160 345 24 0 0 chr1 23969754 23969796 -218694557 + (TG)n Simple_repeat Simple_repeat 2 43 0 1673 184 4 0 chr1 23969797 23970075 -218694278 - AluJb SINE Alu -33 279 1 808 246 23 66 chr1 23970075 23970128 -218694225 + MIR SINE MIR 102 156 -106 419 179 0 13 chr1 23970128 23970206 -218694147 - MER116 DNA Mariner -3 77 1 808 246 23 66 chr1 23970206 23970313 -218694040 + MIR SINE MIR 156 252 -10 334 216 137 69 chr1 23970544 23970646 -218693707 - L2 LINE L2 -2 3311 3203 331 339 170 6 chr1 23970788 23970959 -218693394 - L2 LINE L2 -173 3099 2901 862 272 51 24 chr1 23971434 23971688 -218692665 + MIR SINE MIR 2 262 0 1980 142 0 16 chr1 23971955 23972271 -218692082 + AluSx SINE Alu 1 311 -1 733 178 104 0 chr1 23972548 23972711 -218691642 - MER58A DNA MER1_type 0 224 45 214 229 0 0 chr1 23972773 23972821 -218691532 - MIR SINE MIR -136 126 79 25 31 0 0 chr1 23973180 23973212 -218691141 + AT_rich Low_complexity Low_complexity 1 32 0 543 279 67 6 chr1 23974192 23974357 -218689996 - MIR3 SINE MIR -15 193 19 186 269 39 0 chr1 23974965 23975017 -218689336 - MIR3 SINE MIR -4 204 151 721 238 12 0 chr1 23975031 23975199 -218689154 - MER117 DNA MER1_type -27 170 1 392 346 38 0 chr1 23975200 23975333 -218689020 - MIR3 SINE MIR -49 159 22 250 186 0 0 chr1 23975491 23975534 -218688819 - L2 LINE L2 -7 3306 3264 * 695 273 78 26 chr1 23975500 23975731 -218688622 - MIR SINE MIR -10 252 10 485 328 148 0 chr1 23976177 23976427 -218687926 - L2 LINE L2 0 3272 2986 371 288 146 26 chr1 23976704 23976930 -218687423 - L2 LINE L2 -193 3079 2827 189 215 25 63 chr1 23977563 23977642 -218686711 - L2 LINE L2 -265 3007 2932 1992 113 0 7 chr1 23978805 23979088 -218685265 + AluSq SINE Alu 1 281 -32 354 23 0 0 chr1 23979088 23979131 -218685222 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 250 350 0 0 chr1 23979245 23979385 -218684968 + (CA)n Simple_repeat Simple_repeat 1 140 0 296 264 11 0 chr1 23979934 23980025 -218684328 - LTR33 LTR ERVL -429 92 1 393 280 23 23 chr1 23980672 23980804 -218683549 + MIR SINE MIR 16 147 -115 2069 115 3 3 chr1 23980862 23981157 -218683196 + AluSg SINE Alu 1 295 -15 281 225 146 22 chr1 23985452 23985541 -218678812 + MIR3 SINE MIR 63 162 -46 390 306 24 28 chr1 23985565 23985734 -218678619 - MIR3 SINE MIR -59 149 10 201 256 0 0 chr1 23986822 23986865 -218677488 - MIR SINE MIR -109 153 111 505 226 13 44 chr1 23986929 23987088 -218677265 + MER5A DNA MER1_type 7 160 -29 663 275 153 13 chr1 23988736 23988965 -218675388 - MIR SINE MIR 0 262 2 256 247 27 0 chr1 23989555 23989628 -218674725 + (CTGGGG)n Simple_repeat Simple_repeat 1 75 0 462 300 63 11 chr1 23989682 23989872 -218674481 + MIR SINE MIR 18 217 -45 254 295 18 80 chr1 23989912 23989980 -218674373 + L2 LINE L2 3205 3265 -48 2947 122 7 2 chr1 23989980 23990406 -218673947 - MSTA LTR MaLR 0 428 1 254 295 18 80 chr1 23990406 23990449 -218673904 + L2 LINE L2 3265 3309 -4 526 208 0 8 chr1 23990469 23990589 -218673764 + MER103 DNA DNA 2 120 -46 636 116 0 26 chr1 23990763 23990864 -218673489 + MSTA LTR MaLR 239 354 -74 222 37 0 0 chr1 23990879 23990906 -218673447 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 411 311 93 59 chr1 23991042 23991331 -218673022 - L2 LINE L2 -41 3231 2933 1175 157 64 149 chr1 23991375 23991784 -218672569 + MLT1A2 LTR MaLR 1 374 0 2504 83 3 0 chr1 23992713 23993025 -218671328 + AluSq SINE Alu 1 313 0 205 319 28 0 chr1 23993398 23993470 -218670883 - MIR SINE MIR -10 252 179 199 164 0 36 chr1 23993477 23993532 -218670821 - MER5C DNA MER1_type -2 322 270 935 179 6 6 chr1 23993536 23993698 -218670655 - FRAM SINE Alu -4 162 1 272 291 23 23 chr1 23993857 23993943 -218670410 - MER5C DNA MER1_type -238 86 1 576 171 19 95 chr1 23993952 23994015 -218670338 - MIR SINE MIR -90 172 106 2427 80 0 16 chr1 23994015 23994327 -218670026 - AluSg SINE Alu -3 307 1 576 171 19 95 chr1 23994327 23994421 -218669932 - MIR SINE MIR -156 106 27 387 217 33 22 chr1 23994596 23994688 -218669665 + L2 LINE L2 3180 3272 0 461 235 61 15 chr1 23994793 23994925 -218669428 + MIR SINE MIR 16 153 -109 2084 133 3 23 chr1 23994928 23995230 -218669123 - AluSx SINE Alu -16 296 1 482 261 94 57 chr1 23995232 23995477 -218668876 - L2 LINE L2 0 3313 3060 624 227 130 5 chr1 23995485 23995670 -218668683 + L1ME3 LINE L1 5889 6096 -66 2366 218 75 31 chr1 23995739 23995804 -218668549 - L2 LINE L2 -248 3065 3004 2153 147 3 0 chr1 23995804 23996110 -218668243 + AluSx SINE Alu 1 307 -5 2366 218 75 31 chr1 23996110 23996425 -218667928 - L2 LINE L2 -309 3004 2704 2120 170 31 13 chr1 23996425 23996814 -218667539 - MLT2C1 LTR ERVL 0 397 2 2366 218 75 31 chr1 23996814 23997211 -218667142 - L2 LINE L2 -609 2704 2241 882 278 76 31 chr1 23997211 23997279 -218667074 - L2 LINE L2 -2206 1108 1045 2384 78 10 0 chr1 23997279 23997573 -218666780 + AluSx SINE Alu 1 297 -15 882 278 76 31 chr1 23997573 23997925 -218666428 - L2 LINE L2 -2269 1045 669 1285 104 0 118 chr1 23997927 23998148 -218666205 + AluJb SINE Alu 1 195 -117 206 239 0 0 chr1 23998294 23998340 -218666013 + L2 LINE L2 3206 3251 -21 903 129 0 0 chr1 23998716 23998840 -218665513 + AluJb SINE Alu 1 124 -188 355 188 86 78 chr1 23999160 23999221 -218665132 + MER63C DNA MER1_type 257 316 -744 2538 85 0 0 chr1 23999221 23999527 -218664826 + AluSc SINE Alu 1 306 -3 1726 163 9 77 chr1 23999535 23999861 -218664492 + AluJo SINE Alu 1 304 -8 355 188 86 78 chr1 23999861 23999918 -218664435 + MER63C DNA MER1_type 322 385 -545 2161 70 11 21 chr1 23999924 24000231 -218664122 - AluSg SINE Alu 0 304 1 370 234 43 0 chr1 24000231 24000325 -218664028 + MER63C DNA MER1_type 821 918 -12 287 303 45 45 chr1 24000345 24000477 -218663876 - MIR SINE MIR -61 147 16 256 200 227 0 chr1 24000830 24000941 -218663412 + MIR SINE MIR 44 186 -76 1117 102 14 0 chr1 24001411 24001558 -218662795 - AluSg/x SINE Alu -1 311 163 1320 157 81 8 chr1 24001565 24001630 -218662723 + AluJo SINE Alu 52 111 -201 240 35 0 0 chr1 24001630 24001659 -218662694 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1320 157 81 8 chr1 24001659 24001829 -218662524 + AluJo SINE Alu 111 304 -8 2285 105 3 10 chr1 24002011 24002316 -218662037 + AluSq SINE Alu 1 303 -10 306 222 0 0 chr1 24002459 24002513 -218661840 + MIR SINE MIR 77 130 -132 1843 196 63 65 chr1 24002529 24002916 -218661437 - MLT1D LTR MaLR 0 505 118 1741 163 14 10 chr1 24002916 24003225 -218661128 + AluJb SINE Alu 5 312 0 1843 196 63 65 chr1 24003225 24003343 -218661010 - MLT1D LTR MaLR -387 118 1 756 225 75 0 chr1 24003707 24003880 -218660473 + MER51C LTR ERV1 455 640 0 728 277 48 0 chr1 24004050 24004238 -218660115 - MIR SINE MIR -9 253 57 253 329 61 0 chr1 24004812 24004894 -218659459 - MER91 DNA MER1_type -58 138 52 1359 168 62 65 chr1 24005148 24005457 -218658896 + AluJo SINE Alu 1 308 -4 1540 196 60 11 chr1 24005501 24005782 -218658571 - AluJb SINE Alu -17 295 1 288 206 29 0 chr1 24005886 24005954 -218658399 - MLT1G1 LTR MaLR 0 595 526 7692 25 0 0 chr1 24006027 24007643 -218656710 - L1PA4 LINE L1 0 6155 4541 1604 223 31 15 chr1 24007643 24008123 -218656230 + L1MD1 LINE L1 2550 3037 -3109 928 204 91 11 chr1 24008123 24008309 -218656044 - AluJo SINE Alu -111 201 1 240 250 29 0 chr1 24008413 24008481 -218655872 - MLT1G1 LTR MaLR 0 595 526 2102 236 49 36 chr1 24008487 24009226 -218655127 + L1MD1 LINE L1 3045 3792 -2354 1825 157 164 8 chr1 24009228 24009624 -218654729 + LOR1b LTR ERV1 4 461 0 1471 130 60 60 chr1 24009738 24009998 -218654355 + LOR1b-int LTR ERV1 122 384 -7736 2204 139 0 0 chr1 24009998 24010300 -218654053 - AluSx SINE Alu -10 302 1 1471 130 60 60 chr1 24010300 24010338 -218654015 + LOR1b-int LTR ERV1 383 420 -7700 204 217 0 0 chr1 24010338 24010384 -218653969 + (TG)n Simple_repeat Simple_repeat 2 47 0 320 261 0 0 chr1 24011256 24011321 -218653032 - LOR1-int LTR ERV1 -7531 589 525 2357 112 0 3 chr1 24011521 24011834 -218652519 + AluSx SINE Alu 1 312 0 747 321 49 41 chr1 24012137 24012651 -218651702 + HERV17 LTR ERV1 3218 3735 -3387 263 322 19 38 chr1 24012653 24012864 -218651489 + HERV17 LTR ERV1 4431 4637 -3119 * 329 318 4 90 chr1 24012857 24012978 -218651375 + HERV17 LTR ERV1 6152 6282 -2344 1866 171 7 0 chr1 24012978 24013271 -218651082 - AluJb SINE Alu -16 296 2 2284 110 3 0 chr1 24013281 24013581 -218650772 - AluSg SINE Alu -9 301 1 329 318 4 90 chr1 24013581 24013703 -218650650 + HERV17 LTR ERV1 6291 6384 -2242 402 19 0 19 chr1 24013722 24013774 -218650579 + LOR1-int LTR ERV1 7166 7216 -904 5188 184 31 56 chr1 24013774 24014022 -218650331 + L1MD1 LINE L1 3789 4042 -2200 2436 88 0 0 chr1 24014022 24014327 -218650026 + AluSg SINE Alu 1 305 -5 5188 184 31 56 chr1 24014327 24014411 -218649942 + L1MD1 LINE L1 4042 4127 -2115 2612 62 0 0 chr1 24014411 24014719 -218649634 + AluY SINE Alu 1 308 -3 5188 184 31 56 chr1 24014719 24015527 -218648826 + L1MD1 LINE L1 4127 4953 -1289 1318 164 18 123 chr1 24015527 24015868 -218648485 - AluYb8 SINE Alu -13 305 1 5188 184 31 56 chr1 24015868 24015910 -218648443 + L1MD1 LINE L1 4953 4995 -1247 1328 164 24 155 chr1 24015910 24016330 -218648023 + MLT1A1 LTR MaLR 1 365 0 5188 184 31 56 chr1 24016330 24016587 -218647766 + L1MD1 LINE L1 4995 5257 -985 1614 218 64 80 chr1 24016587 24016972 -218647381 - MLT1D LTR MaLR 0 505 128 1832 162 14 10 chr1 24016972 24017269 -218647084 + AluJo SINE Alu 2 299 -13 1614 218 64 80 chr1 24017269 24017396 -218646957 - MLT1D LTR MaLR -377 128 1 5188 184 31 56 chr1 24017396 24018320 -218646033 + L1MD1 LINE L1 5257 6085 -157 623 212 26 46 chr1 24018321 24018507 -218645846 - FRAM SINE Alu 0 183 1 463 145 118 13 chr1 24018507 24018645 -218645708 + L1MD1 LINE L1 6075 6359 0 2378 200 98 19 chr1 24018689 24018981 -218645372 + L1ME1 LINE L1 5141 5409 -757 2303 102 0 19 chr1 24018981 24019295 -218645058 + AluY SINE Alu 1 308 -3 2378 200 98 19 chr1 24019295 24019502 -218644851 + L1ME1 LINE L1 5409 5598 -568 2329 92 7 0 chr1 24019502 24019807 -218644546 + AluSg SINE Alu 1 307 -3 2378 200 98 19 chr1 24019807 24020139 -218644214 + L1ME1 LINE L1 5598 6160 -6 1287 133 38 14 chr1 24020145 24020355 -218643998 - AluJb SINE Alu -11 301 87 2296 85 3 0 chr1 24020363 24020656 -218643697 - AluSx SINE Alu -16 296 3 519 124 134 139 chr1 24020674 24020868 -218643485 - MER5C DNA MER1_type -128 196 4 429 271 49 0 chr1 24022099 24022221 -218642132 - MIR3 SINE MIR -20 188 61 430 263 0 83 chr1 24022517 24022673 -218641680 - MIR3 SINE MIR -49 159 17 258 266 221 32 chr1 24022903 24023057 -218641296 + L2 LINE L2 3130 3312 -1 572 271 111 24 chr1 24023505 24023712 -218640641 + MIR SINE MIR 37 261 -1 2358 96 3 7 chr1 24023730 24024033 -218640320 + AluSx SINE Alu 1 302 -10 1803 176 13 0 chr1 24024042 24024344 -218640009 + AluJo SINE Alu 3 308 -4 304 289 45 94 chr1 24024781 24024982 -218639371 - HAL1 LINE L1 -1 2506 2316 1764 241 64 39 chr1 24025025 24025587 -218638766 - L1MC4a LINE L1 -1849 5959 5375 2415 99 0 3 chr1 24025587 24025901 -218638452 - AluSq SINE Alu 0 313 1 1764 241 64 39 chr1 24025901 24026027 -218638326 - L1MC4a LINE L1 -2433 5375 5254 1482 166 8 4 chr1 24026099 24026334 -218638019 - AluJo SINE Alu -76 236 1 404 311 64 21 chr1 24027119 24027316 -218637037 + MIR SINE MIR 40 254 -8 235 160 15 118 chr1 24027694 24027782 -218636571 + MIR SINE MIR 84 141 -67 2587 74 0 3 chr1 24028283 24028592 -218635761 + AluSq SINE Alu 1 308 -5 1694 209 0 0 chr1 24028723 24029029 -218635324 - AluJb SINE Alu -6 306 1 594 274 99 24 chr1 24029084 24029296 -218635057 - MIR SINE MIR -1 261 34 2230 131 0 3 chr1 24029300 24029613 -218634740 - AluSx SINE Alu 0 312 1 2101 100 0 4 chr1 24029724 24029995 -218634358 - AluSg SINE Alu -40 270 1 326 326 79 47 chr1 24030155 24030434 -218633919 - L3 LINE CR1 -270 1307 1020 484 296 87 112 chr1 24030523 24030962 -218633391 + L2 LINE L2 2845 3272 0 2162 99 0 53 chr1 24031883 24032186 -218632167 - AluSx SINE Alu -25 287 1 390 262 134 0 chr1 24032217 24032381 -218631972 + MLT1H LTR MaLR 115 300 -249 408 218 46 20 chr1 24032434 24032565 -218631788 + MLT1H LTR MaLR 403 549 0 395 328 11 0 chr1 24033021 24033157 -218631196 - MIR SINE MIR -62 146 9 249 182 0 0 chr1 24033630 24033674 -218630679 + L2 LINE L2 3016 3059 -213 965 87 0 0 chr1 24033674 24033801 -218630552 - THE1C LTR MaLR 0 375 249 1305 177 23 0 chr1 24033801 24034061 -218630292 + L1MB7 LINE L1 5901 6166 -18 406 171 143 19 chr1 24034070 24034175 -218630178 + MIR SINE MIR 145 262 0 376 296 10 10 chr1 24034170 24034268 -218630085 - L2 LINE L2 -21 3251 3154 * 318 266 204 0 chr1 24034432 24034545 -218629808 + L1M4 LINE L1 3284 3419 -2727 544 278 111 21 chr1 24034545 24034879 -218629474 + L2 LINE L2 2175 2538 -776 1824 161 0 21 chr1 24034903 24035036 -218629317 + AluJb SINE Alu 3 137 -175 2108 159 0 0 chr1 24035036 24035344 -218629009 + AluJb SINE Alu 1 308 -4 1824 161 0 21 chr1 24035344 24035496 -218628857 + AluJb SINE Alu 137 282 -30 267 203 0 0 chr1 24035511 24035570 -218628783 + (CATA)n Simple_repeat Simple_repeat 2 60 0 180 97 0 0 chr1 24035594 24035625 -218628728 + (GA)n Simple_repeat Simple_repeat 2 32 0 448 267 122 22 chr1 24035686 24035866 -218628487 + L2 LINE L2 3114 3311 -2 310 203 0 0 chr1 24036389 24036448 -218627905 - L1ME LINE L1 -739 5431 5373 954 212 126 0 chr1 24036594 24036825 -218627528 + MIR SINE MIR 1 260 -2 351 127 36 0 chr1 24036838 24036893 -218627460 - AluJ/FRAM SINE Alu -13 289 233 1013 135 0 0 chr1 24036894 24037027 -218627326 - AluJo/FLAM SINE Alu -179 133 1 305 258 31 0 chr1 24037203 24037300 -218627053 - L1ME LINE L1 -1161 4985 4886 208 220 40 0 chr1 24037844 24037894 -218626459 + L2 LINE L2 3212 3263 -9 413 325 34 0 chr1 24037906 24038023 -218626330 + MIR SINE MIR 33 153 -55 1847 207 55 16 chr1 24038114 24038507 -218625846 + L1ME1 LINE L1 5702 6115 -51 1845 132 4 11 chr1 24038507 24038780 -218625573 + AluJo SINE Alu 33 303 -9 1847 207 55 16 chr1 24038780 24038826 -218625527 + L1ME1 LINE L1 6115 6158 -8 273 315 67 0 chr1 24039064 24039153 -218625200 - MIR SINE MIR -118 144 50 203 277 32 64 chr1 24039557 24039630 -218624723 - L2 LINE L2 -2 3270 3201 573 250 100 25 chr1 24039630 24039830 -218624523 + MIR SINE MIR 1 215 -47 477 0 0 0 chr1 24040089 24040142 -218624211 + (ATG)n Simple_repeat Simple_repeat 3 55 0 552 231 19 0 chr1 24040520 24040628 -218623725 - MER81 DNA DNA -3 111 2 521 253 136 40 chr1 24041238 24041436 -218622917 + MIR SINE MIR 40 256 -6 1522 155 7 54 chr1 24041454 24041478 -218622875 - AluJo SINE Alu -17 295 271 1586 167 29 20 chr1 24041478 24041784 -218622569 + AluJb SINE Alu 1 309 -3 1522 155 7 54 chr1 24041784 24042056 -218622297 - AluJo SINE Alu -41 271 13 3770 124 40 30 chr1 24042056 24042679 -218621674 + MER4E LTR ERV1 10 639 -127 1942 137 7 3 chr1 24042679 24042985 -218621368 + AluSx SINE Alu 1 307 -5 3770 124 40 30 chr1 24042985 24043115 -218621238 + MER4E LTR ERV1 639 766 0 586 249 85 42 chr1 24043264 24043429 -218620924 - MER5B DNA MER1_type -6 172 1 503 212 40 0 chr1 24043494 24043593 -218620760 - MER5A DNA MER1_type -80 109 7 410 291 26 8 chr1 24043755 24043872 -218620481 - MIR3 SINE MIR -48 160 42 356 306 159 0 chr1 24043948 24044118 -218620235 - MIR SINE MIR -24 238 42 258 171 24 61 chr1 24044150 24044232 -218620121 + MIR SINE MIR 170 248 -14 255 31 0 0 chr1 24044256 24044288 -218620065 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 213 191 106 0 chr1 24044333 24044380 -218619973 + L2 LINE L2 3170 3221 -51 186 221 147 29 chr1 24044733 24044801 -218619552 + L2 LINE L2 2714 2789 -525 819 255 21 34 chr1 24044832 24045067 -218619286 + MIR SINE MIR 31 262 0 1916 133 13 22 chr1 24045155 24045470 -218618883 + AluSx SINE Alu 1 312 0 468 35 0 0 chr1 24045470 24045528 -218618825 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 1875 124 0 0 chr1 24045537 24045810 -218618543 + AluSx SINE Alu 1 273 -39 1069 117 6 6 chr1 24045815 24045994 -218618359 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2085 114 0 3 chr1 24046040 24046338 -218618015 + AluY SINE Alu 1 297 -14 222 224 171 0 chr1 24046450 24046526 -218617827 - L2 LINE L2 -6 3266 3178 1369 263 49 23 chr1 24046533 24046701 -218617652 - L2 LINE L2 -4 3309 3147 1430 165 3 111 chr1 24046701 24046848 -218617505 + AluJb SINE Alu 1 94 -208 2352 73 0 19 chr1 24046848 24047165 -218617188 + AluY SINE Alu 1 311 0 1430 165 3 111 chr1 24047165 24047351 -218617002 + AluJb SINE Alu 94 298 -4 1369 263 49 23 chr1 24047351 24047771 -218616582 - L2 LINE L2 -166 3147 2708 864 171 0 0 chr1 24047773 24047913 -218616440 - FRAM SINE Alu -22 154 15 1745 161 30 3 chr1 24047936 24048240 -218616113 - AluJo SINE Alu 0 312 1 1977 122 3 7 chr1 24048245 24048588 -218615765 - AluSx SINE Alu 0 312 1 518 174 0 12 chr1 24048613 24048699 -218615654 + AluJo SINE Alu 77 161 -151 24 0 0 0 chr1 24048708 24048732 -218615621 + AT_rich Low_complexity Low_complexity 1 24 0 477 261 92 0 chr1 24048732 24048885 -218615468 - L2 LINE L2 -614 2700 2534 1370 126 76 9 chr1 24048885 24049108 -218615245 + MER2 DNA MER2_type 1 238 -107 2002 116 20 7 chr1 24049108 24049411 -218614942 + AluSg SINE Alu 1 307 -3 302 241 230 0 chr1 24049411 24049498 -218614855 - L2 LINE L2 -1084 2230 2124 3847 87 31 61 chr1 24050792 24051288 -218613065 - MER4A LTR ERV1 0 600 125 2033 104 23 3 chr1 24051288 24051587 -218612766 - AluSx SINE Alu -7 305 1 3847 87 31 61 chr1 24051587 24051709 -218612644 - MER4A LTR ERV1 -475 125 1 2166 89 0 40 chr1 24052291 24052617 -218611736 + AluSq SINE Alu 1 313 0 2401 78 0 0 chr1 24052999 24053305 -218611048 + AluSg SINE Alu 1 306 -4 765 256 57 5 chr1 24053876 24054087 -218610266 - LTR33 LTR ERVL -299 222 1 1202 161 24 140 chr1 24054183 24054555 -218609798 + MLT1A1 LTR MaLR 1 329 -36 473 141 0 0 chr1 24054557 24054628 -218609725 + FLAM SINE Alu 57 127 -16 361 89 0 0 chr1 24054628 24054673 -218609680 + MLT1A1 LTR MaLR 347 391 -5 1607 173 73 90 chr1 24054678 24054774 -218609579 + MLT1A1-int LTR MaLR 1 97 -1638 1517 143 26 68 chr1 24054774 24055108 -218609245 - AluSx SINE Alu 0 312 1 1607 173 73 90 chr1 24055108 24055132 -218609221 + MLT1A1-int LTR MaLR 97 120 -1615 2244 95 0 0 chr1 24055132 24055436 -218608917 - AluSx SINE Alu -8 304 1 1607 173 73 90 chr1 24055436 24055724 -218608629 + MLT1A1-int LTR MaLR 120 403 -1332 3922 105 6 48 chr1 24055724 24056350 -218608003 + MER4A LTR ERV1 1 600 0 2957 131 259 40 chr1 24056353 24056824 -218607529 + MER4A-int LTR ERV1 1 367 -6231 1844 150 0 19 chr1 24056824 24057131 -218607222 + AluJb SINE Alu 1 301 -11 2957 131 259 40 chr1 24057131 24057338 -218607015 + MER4A-int LTR ERV1 367 828 -5770 1423 224 31 48 chr1 24057359 24057716 -218606637 + MER4A-int LTR ERV1 1850 2200 -4131 19384 118 88 70 chr1 24057737 24058077 -218606276 + MER4-int LTR ERV1 195 528 -6070 2223 114 0 0 chr1 24058077 24058384 -218605969 + AluSx SINE Alu 1 307 -5 19384 118 88 70 chr1 24058384 24058598 -218605755 + MER4-int LTR ERV1 528 737 -5861 2098 107 23 3 chr1 24058598 24058898 -218605455 + AluSx SINE Alu 1 306 -6 19384 118 88 70 chr1 24058898 24059537 -218604816 + MER4-int LTR ERV1 737 1363 -5235 2107 99 0 3 chr1 24059537 24059872 -218604481 + AluSx SINE Alu 1 334 0 19384 118 88 70 chr1 24059872 24059921 -218604432 + MER4-int LTR ERV1 1363 1410 -5188 2315 82 0 0 chr1 24059921 24060227 -218604126 + AluY SINE Alu 1 306 -5 19384 118 88 70 chr1 24060227 24060587 -218603766 + MER4-int LTR ERV1 1410 1762 -4836 1991 145 3 0 chr1 24060587 24060890 -218603463 + AluSq SINE Alu 1 304 -9 19384 118 88 70 chr1 24060890 24061424 -218602929 + MER4-int LTR ERV1 1762 2285 -4313 1850 113 0 0 chr1 24061424 24061680 -218602673 - AluSx SINE Alu -20 292 37 19384 118 88 70 chr1 24061680 24062421 -218601932 + MER4-int LTR ERV1 2285 3012 -3586 2111 102 3 3 chr1 24062421 24062715 -218601638 - AluSc SINE Alu -15 294 1 19384 118 88 70 chr1 24062715 24064259 -218600094 + MER4-int LTR ERV1 3012 4528 -2070 2307 103 0 0 chr1 24064259 24064569 -218599784 + AluSg SINE Alu 1 310 0 19384 118 88 70 chr1 24064569 24065452 -218598901 + MER4-int LTR ERV1 4528 6473 -125 1647 149 123 20 chr1 24065454 24065862 -218598491 - LTR7 LTR ERV1 0 450 1 3079 159 18 21 chr1 24065862 24066421 -218597932 - HERVH LTR ERV1 0 7713 7157 * 14290 112 30 30 chr1 24066414 24068617 -218595736 - HERVH LTR ERV1 -1697 6016 3813 17944 136 3 18 chr1 24068619 24071473 -218592880 - HERVH LTR ERV1 -4128 3585 773 1999 184 109 16 chr1 24071490 24071941 -218592412 - HERVH LTR ERV1 -7219 494 2 1709 181 108 10 chr1 24071945 24072353 -218592000 - LTR7 LTR ERV1 -2 448 1 751 123 0 87 chr1 24072353 24072426 -218591927 + MER4A-int LTR ERV1 6471 6528 -70 889 150 0 0 chr1 24072426 24072559 -218591794 + FLAM_C SINE Alu 1 133 0 751 123 0 87 chr1 24072559 24072623 -218591730 + MER4A-int LTR ERV1 6528 6596 -2 3571 88 38 97 chr1 24072629 24073071 -218591282 + MER4A LTR ERV1 1 395 -205 1846 104 0 11 chr1 24073071 24073331 -218591022 - AluSx SINE Alu -19 293 37 3571 88 38 97 chr1 24073331 24073526 -218590827 + MER4A LTR ERV1 395 600 0 5519 200 65 71 chr1 24073531 24073673 -218590680 + MSTD-int LTR MaLR 404 545 -1190 1800 133 3 27 chr1 24073673 24073967 -218590386 + AluSg SINE Alu 1 287 -23 5519 200 65 71 chr1 24073967 24074848 -218589505 + MSTD-int LTR MaLR 545 1420 -315 1871 142 7 3 chr1 24074848 24075144 -218589209 + AluJb SINE Alu 1 297 -15 5519 200 65 71 chr1 24075144 24075459 -218588894 + MSTD-int LTR MaLR 1420 1735 0 974 227 61 88 chr1 24075459 24075610 -218588743 + MSTD LTR MaLR 1 155 -241 2185 67 0 64 chr1 24075610 24075756 -218588597 + AluY SINE Alu 1 118 -193 2515 45 0 10 chr1 24075756 24076070 -218588283 + AluY SINE Alu 1 311 0 2185 67 0 64 chr1 24076070 24076236 -218588117 + AluY SINE Alu 118 293 -18 974 227 61 88 chr1 24076236 24076459 -218587894 + MSTD LTR MaLR 155 365 -31 853 188 0 0 chr1 24076473 24076622 -218587731 - AluJb SINE Alu -30 282 134 1966 145 0 7 chr1 24076622 24076926 -218587427 - AluJb SINE Alu -10 302 1 225 91 0 0 chr1 24076930 24076963 -218587390 + MSTD LTR MaLR 342 374 0 580 286 6 37 chr1 24076972 24077133 -218587220 - MIR SINE MIR -89 173 18 1994 113 40 30 chr1 24077218 24077520 -218586833 - AluSx SINE Alu -7 305 1 289 310 0 60 chr1 24077529 24077645 -218586708 - L2 LINE L2 -20 3293 3185 638 244 143 9 chr1 24077934 24078151 -218586202 - MER113 DNA MER1_type? -43 478 233 2238 111 0 0 chr1 24078153 24078459 -218585894 + AluSq SINE Alu 1 306 -7 188 310 132 81 chr1 24079194 24079337 -218585016 - MIR SINE MIR 0 262 107 2063 77 3 95 chr1 24079337 24079673 -218584680 - AluSq SINE Alu -8 305 1 188 310 132 81 chr1 24079673 24079703 -218584650 - MIR SINE MIR -155 107 80 1814 132 30 7 chr1 24080016 24080320 -218584033 + AluJb SINE Alu 1 311 -1 1009 163 36 50 chr1 24080538 24080759 -218583594 + MER20 DNA MER1_type 2 219 0 1758 144 24 10 chr1 24080818 24081116 -218583237 - AluJb SINE Alu -10 302 1 2102 128 0 0 chr1 24081117 24081421 -218582932 - AluSx SINE Alu -8 304 1 244 266 57 65 chr1 24081612 24081736 -218582617 - MIR SINE MIR -62 146 24 288 287 0 28 chr1 24082147 24082255 -218582098 - MIR SINE MIR 0 262 158 1483 141 15 41 chr1 24082490 24082760 -218581593 - AluJo SINE Alu 0 312 50 2118 126 0 0 chr1 24082780 24083089 -218581264 - AluSx SINE Alu -1 311 3 2193 74 47 0 chr1 24083116 24083415 -218580938 + AluSq SINE Alu 1 313 0 3125 122 44 8 chr1 24083431 24083956 -218580397 + L1MB2 LINE L1 5625 6168 -3 1139 84 0 7 chr1 24083998 24084152 -218580201 - AluSx SINE Alu -159 153 1 1733 154 85 3 chr1 24084225 24084543 -218579810 - MER7A DNA MER2_type -4 342 1 988 188 0 0 chr1 24084580 24084740 -218579613 - FRAM SINE Alu -6 160 1 424 288 26 0 chr1 24084742 24084895 -218579458 - L1ME LINE L1 -366 5755 5599 768 208 56 19 chr1 24084909 24085125 -218579228 - HAL1 LINE L1 -6 2501 2278 558 0 0 0 chr1 24085126 24085188 -218579165 + (TA)n Simple_repeat Simple_repeat 1 62 0 2251 49 3 3 chr1 24085189 24085477 -218578876 - AluY SINE Alu -23 288 1 320 284 91 0 chr1 24085570 24085658 -218578695 - HAL1 LINE L1 -265 2242 2147 2214 109 0 0 chr1 24085659 24085971 -218578382 + AluSx SINE Alu 1 312 0 460 196 0 0 chr1 24085988 24086080 -218578273 - HAL1 LINE L1 -342 2165 2074 747 185 0 30 chr1 24086084 24086219 -218578134 - FLAM_A SINE Alu -1 132 2 948 203 41 45 chr1 24086315 24086561 -218577792 - L1ME2 LINE L1 -9 6155 5911 224 234 288 36 chr1 24087030 24087141 -218577212 + L2 LINE L2 3175 3313 0 195 139 0 0 chr1 24087562 24087598 -218576755 + (CGG)n Simple_repeat Simple_repeat 2 37 0 437 345 35 6 chr1 24088599 24088770 -218575583 - MIR SINE MIR -29 233 58 2180 70 7 10 chr1 24089328 24089628 -218574725 + AluSq SINE Alu 1 299 -14 4078 159 105 36 chr1 24089628 24090273 -218574080 - L1MB7 LINE L1 -12 6172 5573 2145 102 3 16 chr1 24090273 24090588 -218573765 - AluSp SINE Alu -2 311 1 1934 119 10 10 chr1 24090594 24090896 -218573457 - AluSx SINE Alu 0 312 11 4078 159 105 36 chr1 24090896 24091733 -218572620 - L1MB7 LINE L1 -615 5569 4563 1759 170 3 0 chr1 24091809 24092097 -218572256 - AluJo SINE Alu -23 289 1 489 260 27 14 chr1 24092400 24092546 -218571807 - MER69A DNA AcHobo -29 148 1 195 295 238 33 chr1 24092717 24092839 -218571514 + MIR SINE MIR 101 247 -15 768 166 122 11 chr1 24093036 24093217 -218571136 - MER3 DNA MER1_type -4 205 5 2229 114 3 0 chr1 24093278 24093577 -218570776 - AluSq SINE Alu -12 301 2 1885 167 10 0 chr1 24093758 24094063 -218570290 + AluJb SINE Alu 1 308 -4 505 75 12 0 chr1 24094213 24094293 -218570060 - L1MA1 LINE L1 0 6302 6222 1804 164 30 3 chr1 24094326 24094630 -218569723 - AluJb SINE Alu 0 312 1 24 53 0 0 chr1 24094997 24095035 -218569318 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr1 24095045 24095068 -218569285 + AT_rich Low_complexity Low_complexity 1 23 0 1557 160 22 47 chr1 24095352 24095670 -218568683 - AluJb SINE Alu -2 310 1 811 158 17 90 chr1 24096100 24096277 -218568076 - AluJb SINE Alu -12 300 137 21 36 0 0 chr1 24097273 24097301 -218567052 + AT_rich Low_complexity Low_complexity 1 28 0 2327 99 0 0 chr1 24097586 24097888 -218566465 - AluSx SINE Alu -10 302 1 251 329 0 0 chr1 24098716 24098786 -218565567 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1527 77 16 0 chr1 24100860 24101054 -218563299 - AluSg/x SINE Alu -24 286 90 405 111 0 0 chr1 24101054 24101108 -218563245 - Alu SINE Alu -254 54 1 2084 106 47 10 chr1 24101200 24101501 -218562852 + AluSx SINE Alu 1 312 0 284 298 98 64 chr1 24101633 24101898 -218562455 - L2 LINE L2 -423 2891 2618 2219 116 3 0 chr1 24103146 24103448 -218560905 - AluSp SINE Alu -8 305 3 1964 135 10 16 chr1 24104946 24105078 -218559275 + AluSx SINE Alu 1 132 -180 207 0 0 0 chr1 24105078 24105101 -218559252 + (CA)n Simple_repeat Simple_repeat 2 24 0 1964 135 10 16 chr1 24105101 24105271 -218559082 + AluSx SINE Alu 132 301 -11 1072 157 55 0 chr1 24105371 24105588 -218558765 - L1MA8 LINE L1 -3 6288 6060 336 24 0 0 chr1 24106199 24106240 -218558113 + (TG)n Simple_repeat Simple_repeat 2 42 0 562 141 0 22 chr1 24106857 24106949 -218557404 - AluJ/FLAM SINE Alu -213 99 10 198 383 64 14 chr1 24107293 24107434 -218556919 + L2 LINE L2 2560 2707 -607 185 336 74 25 chr1 24107764 24107886 -218556467 + L2 LINE L2 3159 3286 -27 1677 172 38 14 chr1 24108463 24108753 -218555600 + AluJo SINE Alu 1 297 -15 2438 85 0 0 chr1 24109384 24109689 -218554664 - AluSg SINE Alu -5 305 1 23 33 0 0 chr1 24109780 24109810 -218554543 + AT_rich Low_complexity Low_complexity 1 30 0 2857 6 0 0 chr1 24110389 24110700 -218553653 - AluYa5 SINE Alu 0 311 1 2161 119 0 0 chr1 24110711 24110997 -218553356 - AluSx SINE Alu -26 286 1 330 214 66 148 chr1 24113971 24114153 -218550200 - MIR3 SINE MIR -10 198 32 1604 159 26 43 chr1 24115568 24115870 -218548483 + AluJb SINE Alu 1 297 -15 26 0 0 0 chr1 24116365 24116391 -218547962 + AT_rich Low_complexity Low_complexity 1 26 0 2268 103 0 13 chr1 24116815 24117125 -218547228 + AluSx SINE Alu 1 306 -6 2099 89 0 4 chr1 24117387 24117656 -218546697 + AluSq SINE Alu 38 305 -8 236 241 132 32 chr1 24118498 24118718 -218545635 - L1ME4a LINE L1 -10 6111 5870 2091 120 3 13 chr1 24118751 24119051 -218545302 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr1 24119060 24119082 -218545271 + AT_rich Low_complexity Low_complexity 1 22 0 509 241 153 17 chr1 24119166 24119402 -218544951 - L1ME4a LINE L1 -304 5817 5550 409 306 161 19 chr1 24120597 24120921 -218543432 + L2 LINE L2 1945 2314 -1000 244 296 42 0 chr1 24121097 24121168 -218543185 + MIR SINE MIR 31 104 -158 237 242 32 16 chr1 24121173 24121235 -218543118 - L3 LINE CR1 -350 1227 1165 2030 162 0 0 chr1 24121325 24121634 -218542719 - AluJb SINE Alu -3 309 1 799 154 0 23 chr1 24122227 24122357 -218541996 + FLAM_A SINE Alu 3 129 -4 441 182 0 0 chr1 24122454 24122531 -218541822 - AluJb SINE Alu -32 280 204 241 117 21 21 chr1 24122532 24122586 -218541767 - Alu SINE Alu -152 150 105 1339 222 31 3 chr1 24122587 24122875 -218541478 - AluJo SINE Alu -16 296 1 32 0 0 0 chr1 24123259 24123291 -218541062 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1 24124607 24124632 -218539721 + AT_rich Low_complexity Low_complexity 1 25 0 1447 111 120 0 chr1 24125749 24125966 -218538387 - AluY SINE Alu -9 302 60 1354 178 66 4 chr1 24125979 24126237 -218538116 - AluJb SINE Alu -16 296 23 602 136 0 0 chr1 24126239 24126327 -218538026 - AluS SINE Alu -225 88 1 623 250 21 0 chr1 24126448 24126592 -218537761 - AluJo SINE Alu -161 151 5 180 179 0 0 chr1 24127195 24127234 -218537119 + (TA)n Simple_repeat Simple_repeat 1 39 0 195 269 60 15 chr1 24129101 24129168 -218535185 + MER5C DNA MER1_type 17 86 -238 2138 121 3 7 chr1 24129609 24129907 -218534446 - AluSx SINE Alu -15 297 1 338 320 59 35 chr1 24129952 24130155 -218534198 - MIR SINE MIR -41 221 14 276 53 0 0 chr1 24131166 24131204 -218533149 + (TG)n Simple_repeat Simple_repeat 2 39 0 259 207 35 35 chr1 24131654 24131712 -218532641 - L2 LINE L2 0 3272 3215 1667 169 10 14 chr1 24131843 24132138 -218532215 - AluJb SINE Alu -18 294 1 246 62 0 0 chr1 24133666 24133698 -218530655 + (TTG)n Simple_repeat Simple_repeat 2 33 0 200 259 0 19 chr1 24136783 24136837 -218527516 + MIR3 SINE MIR 154 206 -2 1259 113 133 0 chr1 24137348 24137551 -218526802 + MER30 DNA MER1_type 1 230 0 220 267 33 33 chr1 24137910 24138000 -218526353 + MIR SINE MIR 103 192 -70 2008 141 7 10 chr1 24138138 24138437 -218525916 + AluSx SINE Alu 1 298 -14 2452 75 0 0 chr1 24138477 24138772 -218525581 + AluY SINE Alu 3 297 -14 535 274 168 0 chr1 24139596 24139793 -218524560 + MIR SINE MIR 32 261 -1 2181 104 21 0 chr1 24140600 24140888 -218523465 - AluSq SINE Alu -19 294 1 212 302 0 0 chr1 24141043 24141096 -218523257 - L2 LINE L2 -38 3234 3182 285 249 73 42 chr1 24141432 24141452 -218522901 - L1MA10 LINE L1 -2 6332 6313 2930 197 128 22 chr1 24141452 24142384 -218521969 - L1ME1 LINE L1 -11 6155 5163 654 150 39 24 chr1 24142384 24142511 -218521842 - AluJb SINE Alu -8 304 176 1856 219 133 17 chr1 24142513 24143161 -218521192 - L1ME1 LINE L1 -1002 5144 4422 1995 102 53 7 chr1 24143250 24143533 -218520820 + AluSx SINE Alu 1 296 -16 32 75 0 0 chr1 24143543 24143610 -218520743 + AT_rich Low_complexity Low_complexity 1 67 0 2389 79 3 0 chr1 24143614 24143906 -218520447 + AluSq SINE Alu 1 293 -20 2079 114 28 10 chr1 24144638 24144928 -218519425 + AluSg SINE Alu 1 295 -15 686 155 0 0 chr1 24145549 24145652 -218518701 - MER46A DNA MER2_type -89 147 45 413 269 92 0 chr1 24146709 24146828 -218517525 + MIR SINE MIR 28 157 -105 182 245 20 0 chr1 24147766 24147815 -218516538 - L2 LINE L2 -90 3223 3174 247 299 109 43 chr1 24148285 24148725 -218515628 + L2 LINE L2 2478 3029 -243 1370 186 145 49 chr1 24152107 24152494 -218511859 - MLT1D LTR MaLR -17 488 65 233 250 29 29 chr1 24155115 24155183 -218509170 - MIR3 SINE MIR -31 177 110 537 268 39 22 chr1 24155335 24155514 -218508839 - MIR3 SINE MIR -7 201 20 1231 97 0 0 chr1 24157550 24157705 -218506648 - AluSg/x SINE Alu -21 291 137 2332 93 10 0 chr1 24157705 24158006 -218506347 - AluSq SINE Alu -9 304 1 493 285 0 21 chr1 24158081 24158225 -218506128 + MIR3 SINE MIR 6 146 -62 214 309 29 0 chr1 24159059 24159127 -218505226 + GA-rich Low_complexity Low_complexity 3 72 0 200 139 116 0 chr1 24162421 24162464 -218501889 + L2 LINE L2 3264 3311 -2 2807 247 84 46 chr1 24163247 24164478 -218499875 + L1MEd LINE L1 1 1271 -4858 1009 216 105 73 chr1 24164574 24164639 -218499714 - MLT1A1 LTR MaLR 0 365 304 2098 138 0 0 chr1 24164639 24164936 -218499417 + AluSx SINE Alu 1 297 -15 1009 216 105 73 chr1 24164936 24165213 -218499140 - MLT1A1 LTR MaLR -61 304 12 866 215 22 154 chr1 24165283 24165517 -218498836 - L2 LINE L2 -640 2674 2515 1363 181 75 43 chr1 24165517 24165798 -218498555 + AluJo SINE Alu 1 290 -22 866 215 22 154 chr1 24165798 24165973 -218498380 - L2 LINE L2 -799 2515 2319 1439 283 111 33 chr1 24165977 24166646 -218497707 - L2 LINE L2 -2063 1251 531 341 280 11 0 chr1 24167329 24167422 -218496931 + L1MB7 LINE L1 6082 6175 -9 237 282 96 19 chr1 24167748 24167904 -218496449 + L2 LINE L2 2723 2890 -424 232 276 0 17 chr1 24168092 24168150 -218496203 + L2 LINE L2 3189 3245 -27 203 301 123 0 chr1 24169324 24169397 -218494956 - MIR SINE MIR -161 101 20 226 322 0 0 chr1 24169787 24169846 -218494507 - L2 LINE L2 0 3272 3214 277 255 75 9 chr1 24169913 24170019 -218494334 + L2 LINE L2 3038 3150 -163 594 263 0 26 chr1 24170471 24170627 -218493726 - MER58A DNA MER1_type -33 191 40 690 186 0 0 chr1 24170627 24170745 -218493608 + FLAM_C SINE Alu 2 119 -24 295 68 102 0 chr1 24170835 24170894 -218493459 + (CATTT)n Simple_repeat Simple_repeat 3 67 0 1483 154 43 53 chr1 24170894 24171193 -218493160 - AluJo SINE Alu -16 296 1 638 237 79 28 chr1 24171377 24171554 -218492799 - L3 LINE CR1 -2 1575 1390 394 228 83 62 chr1 24171561 24171754 -218492599 + L2 LINE L2 3105 3301 -12 959 68 8 0 chr1 24171758 24171890 -218492463 + (GGGA)n Simple_repeat Simple_repeat 1 133 0 2205 115 3 16 chr1 24172119 24172432 -218491921 - AluSx SINE Alu -3 309 1 266 307 110 16 chr1 24172556 24172683 -218491670 + L2 LINE L2 3134 3272 0 287 333 0 12 chr1 24172683 24172767 -218491586 + L3 LINE CR1 1026 1108 -469 247 242 95 21 chr1 24173079 24173174 -218491179 - L2 LINE L2 -669 2645 2544 226 287 9 46 chr1 24173201 24173309 -218491044 - L3 LINE CR1 -575 1002 899 568 261 206 10 chr1 24173343 24173542 -218490811 + MIR SINE MIR 2 239 -23 23 0 0 0 chr1 24173558 24173581 -218490772 + AT_rich Low_complexity Low_complexity 1 23 0 190 331 196 20 chr1 24173656 24173804 -218490549 - L3 LINE CR1 -882 695 522 267 302 198 0 chr1 24174081 24174207 -218490146 - L3 LINE CR1 -1197 380 230 1957 146 0 22 chr1 24174273 24174588 -218489765 + AluJb SINE Alu 5 312 0 1384 208 66 65 chr1 24174624 24175373 -218488980 + L2 LINE L2 2525 3256 -57 2136 101 0 33 chr1 24175467 24175773 -218488580 + AluSx SINE Alu 1 296 -16 1813 147 32 3 chr1 24176283 24176568 -218487785 + AluJo SINE Alu 9 301 -11 491 246 194 0 chr1 24176575 24176750 -218487603 + MIR SINE MIR 51 259 -3 289 299 126 31 chr1 24177391 24177432 -218486921 - MIR3 SINE MIR -12 196 160 1916 147 39 25 chr1 24177432 24177787 -218486566 + MER46B DNA MER2_type 1 235 -1 289 299 126 31 chr1 24177787 24177872 -218486481 - MIR3 SINE MIR -48 160 58 312 233 150 45 chr1 24177975 24178108 -218486245 - MIR SINE MIR -108 154 8 315 71 0 0 chr1 24178572 24178614 -218485739 + (CA)n Simple_repeat Simple_repeat 2 43 0 534 185 0 0 chr1 24178753 24178845 -218485508 - FLAM_C SINE Alu -15 128 37 2271 112 0 0 chr1 24178866 24179169 -218485184 + AluSx SINE Alu 1 303 -9 1621 185 0 34 chr1 24179217 24179515 -218484838 + AluJo SINE Alu 1 288 -24 205 143 41 0 chr1 24179727 24179776 -218484577 + (CA)n Simple_repeat Simple_repeat 2 52 0 361 241 9 17 chr1 24180339 24180455 -218483898 - MIR3 SINE MIR -22 186 72 2165 225 112 59 chr1 24180524 24181061 -218483292 + L1ME LINE L1 47 554 -5516 1721 143 7 55 chr1 24181061 24181392 -218482961 + AluJo SINE Alu 3 319 0 2165 225 112 59 chr1 24181392 24181548 -218482805 + L1ME LINE L1 554 700 -5370 2457 86 0 0 chr1 24181548 24181852 -218482501 + AluSc SINE Alu 1 304 -5 2165 225 112 59 chr1 24181852 24182049 -218482304 + L1ME LINE L1 700 986 -5084 353 320 54 14 chr1 24182709 24182856 -218481497 + MIR3 SINE MIR 17 169 -39 2477 68 0 3 chr1 24183497 24183790 -218480563 - AluSx SINE Alu -20 292 1 1557 196 35 3 chr1 24183915 24184047 -218480306 + AluJo SINE Alu 1 127 -185 1731 154 37 0 chr1 24184047 24184320 -218480033 + AluJo SINE Alu 1 283 -29 1557 196 35 3 chr1 24184320 24184472 -218479881 + AluJo SINE Alu 127 294 -18 345 88 29 15 chr1 24184533 24184601 -218479752 + (GAAAA)n Simple_repeat Simple_repeat 3 71 0 295 304 138 28 chr1 24185152 24185333 -218479020 + MIR SINE MIR 25 225 -37 207 0 0 0 chr1 24185403 24185426 -218478927 + (TC)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr1 24185456 24185478 -218478875 + GC_rich Low_complexity Low_complexity 1 22 0 2337 104 0 0 chr1 24185758 24186067 -218478286 + AluSg SINE Alu 1 309 -1 2008 123 18 4 chr1 24186078 24186355 -218477998 + AluSx SINE Alu 11 291 -21 1053 124 0 0 chr1 24187200 24187345 -218477008 - FRAM SINE Alu -5 171 27 273 309 0 49 chr1 24187373 24187454 -218476899 + MIR SINE MIR 47 123 -85 316 343 84 0 chr1 24187561 24187704 -218476649 + L2 LINE L2 3102 3256 -16 1680 192 0 19 chr1 24187874 24188186 -218476167 - AluJb SINE Alu -1 311 6 1586 150 55 29 chr1 24188331 24188605 -218475748 - AluJo SINE Alu -30 282 2 215 246 105 26 chr1 24188637 24188751 -218475602 - MIR SINE MIR -45 217 95 1786 160 21 7 chr1 24189385 24189666 -218474687 + AluJb SINE Alu 1 285 -27 2277 106 0 0 chr1 24189680 24189963 -218474390 + AluSx SINE Alu 3 285 -27 222 62 0 0 chr1 24189963 24189995 -218474358 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 237 217 0 72 chr1 24190081 24190150 -218474203 + L2 LINE L2 3248 3311 -2 2436 84 0 0 chr1 24191160 24191459 -218472894 + AluSg SINE Alu 1 299 -11 455 251 126 29 chr1 24192142 24192317 -218472036 - MIR3 SINE MIR 0 208 17 225 0 0 0 chr1 24193780 24193805 -218470548 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 347 281 16 31 chr1 24193849 24193977 -218470376 - MER5A DNA MER1_type 0 189 64 623 176 9 0 chr1 24194286 24194394 -218469959 + FLAM_C SINE Alu 2 110 -33 403 333 69 11 chr1 24194400 24194589 -218469764 + L2 LINE L2 3099 3298 -15 395 314 112 5 chr1 24195111 24195299 -218469054 - MIR SINE MIR -48 214 7 2314 75 0 0 chr1 24195454 24195771 -218468582 - AluY SINE Alu 0 317 1 2448 85 3 0 chr1 24195799 24196105 -218468248 + AluSg SINE Alu 1 307 -3 2249 100 3 3 chr1 24197248 24197547 -218466806 + AluSp SINE Alu 1 299 -14 27 0 0 0 chr1 24197852 24197879 -218466474 + AT_rich Low_complexity Low_complexity 1 27 0 875 158 0 0 chr1 24198479 24198612 -218465741 - FLAM_C SINE Alu 0 133 1 845 237 82 88 chr1 24198726 24198884 -218465469 + L2 LINE L2 2804 2961 -352 2450 87 0 6 chr1 24198884 24199196 -218465157 + AluSx SINE Alu 1 310 -2 845 237 82 88 chr1 24199196 24199534 -218464819 + L2 LINE L2 2961 3297 -16 2307 99 0 0 chr1 24199627 24199934 -218464419 - AluSx SINE Alu 0 307 1 316 182 15 61 chr1 24199934 24200000 -218464353 - AluJo SINE Alu -156 146 84 254 220 0 0 chr1 24200131 24200181 -218464172 - L2 LINE L2 -10 3303 3254 281 250 220 53 chr1 24200477 24200777 -218463576 + L1MC4 LINE L1 7690 8039 -3 29 0 0 0 chr1 24201191 24201220 -218463133 + AT_rich Low_complexity Low_complexity 1 29 0 822 267 159 22 chr1 24201258 24201429 -218462924 + L1MC4 LINE L1 7177 7323 -719 2070 137 0 0 chr1 24201429 24201752 -218462601 + AluSx SINE Alu 1 323 0 822 267 159 22 chr1 24201752 24201938 -218462415 + L1MC4 LINE L1 7323 7584 -458 573 207 193 7 chr1 24201979 24202124 -218462229 + MER58B DNA MER1_type 169 340 -1 1758 169 0 10 chr1 24202147 24202442 -218461911 + AluJo SINE Alu 1 292 -20 1886 154 0 13 chr1 24202445 24202744 -218461609 + AluJb SINE Alu 1 295 -17 1197 94 29 6 chr1 24202769 24202940 -218461413 - L1PA11 LINE L1 0 6174 6000 681 155 75 18 chr1 24203051 24203243 -218461110 - MER46C DNA MER2_type -4 334 92 24 0 0 0 chr1 24203685 24203709 -218460644 + AT_rich Low_complexity Low_complexity 1 24 0 226 387 0 21 chr1 24203870 24203963 -218460390 + MIR3 SINE MIR 2 92 -116 466 83 0 0 chr1 24204174 24204234 -218460119 + Alu SINE Alu 2 61 -248 423 0 0 0 chr1 24204244 24204291 -218460062 + (CA)n Simple_repeat Simple_repeat 2 48 0 339 319 43 21 chr1 24204450 24204578 -218459775 - MIR3 SINE MIR -35 173 40 2442 52 0 33 chr1 24204578 24204883 -218459470 + AluY SINE Alu 4 298 -13 339 319 43 21 chr1 24204883 24204895 -218459458 - MIR3 SINE MIR -168 40 30 4136 142 60 51 chr1 24205066 24205307 -218459046 + L1MB7 LINE L1 5192 5429 -755 2248 119 0 0 chr1 24205307 24205601 -218458752 + AluSq SINE Alu 1 294 -19 4136 142 60 51 chr1 24205601 24205929 -218458424 + L1MB7 LINE L1 5429 5752 -432 2079 126 3 14 chr1 24205929 24206222 -218458131 - AluSx SINE Alu -22 290 1 4136 142 60 51 chr1 24206222 24206606 -218457747 + L1MB7 LINE L1 5752 6156 -28 336 24 0 0 chr1 24206606 24206647 -218457706 + (TG)n Simple_repeat Simple_repeat 2 42 0 452 139 26 9 chr1 24206647 24206669 -218457684 + (TA)n Simple_repeat Simple_repeat 2 22 -96 2172 117 17 0 chr1 24206669 24206969 -218457384 + AluSx SINE Alu 1 305 -7 452 139 26 9 chr1 24206969 24207061 -218457292 + (TA)n Simple_repeat Simple_repeat 22 118 0 1876 140 84 45 chr1 24207337 24207625 -218456728 + Tigger2a DNA MER2_type 2 308 -2400 1676 197 0 7 chr1 24207625 24207915 -218456438 + AluJo SINE Alu 12 299 -13 1876 140 84 45 chr1 24207915 24207982 -218456371 + Tigger2a DNA MER2_type 308 371 -63 1591 179 6 54 chr1 24209632 24209795 -218454558 - AluJo SINE Alu -14 298 156 2321 84 7 7 chr1 24209795 24210093 -218454260 - AluSp SINE Alu -14 299 2 1591 179 6 54 chr1 24210093 24210242 -218454111 - AluJo SINE Alu -156 156 1 459 0 0 0 chr1 24210649 24210700 -218453653 + (CA)n Simple_repeat Simple_repeat 2 52 0 392 169 0 16 chr1 24210700 24210761 -218453592 + Tigger2 DNA MER2_type 2647 2718 0 780 149 0 25 chr1 24210832 24210953 -218453400 + AluJo/FLAM SINE Alu 1 118 -184 2023 142 7 0 chr1 24210953 24211255 -218453098 - AluSg SINE Alu -6 304 1 639 293 35 13 chr1 24211677 24211906 -218452447 - MIR SINE MIR -27 235 2 1842 140 16 32 chr1 24212841 24213149 -218451204 - AluJb SINE Alu -9 303 1 667 245 55 19 chr1 24213311 24213417 -218450936 - MIR SINE MIR 0 262 161 2277 102 0 10 chr1 24213417 24213721 -218450632 - AluSq SINE Alu -12 301 1 667 245 55 19 chr1 24213721 24213833 -218450520 - MIR SINE MIR -101 161 37 2185 84 47 0 chr1 24213989 24214264 -218450089 - AluSc SINE Alu -21 288 1 436 217 203 7 chr1 24214321 24214464 -218449889 + MIR SINE MIR 22 192 -70 1826 139 14 11 chr1 24214472 24214753 -218449600 + AluJb SINE Alu 9 290 -22 2422 60 0 0 chr1 24214764 24215077 -218449276 + AluY SINE Alu 1 313 0 2303 111 0 3 chr1 24215107 24215414 -218448939 + AluSx SINE Alu 1 306 -6 801 110 0 52 chr1 24215450 24215586 -218448767 + FLAM_C SINE Alu 15 143 0 216 286 82 71 chr1 24216053 24216151 -218448202 - MIR SINE MIR -58 150 52 1579 190 18 3 chr1 24216771 24217055 -218447298 + AluJb SINE Alu 21 308 -4 23 0 0 0 chr1 24217055 24217078 -218447275 + AT_rich Low_complexity Low_complexity 1 23 0 2407 65 38 0 chr1 24217641 24217933 -218446420 + AluSc SINE Alu 1 303 -6 2234 112 3 3 chr1 24218989 24219292 -218445061 - AluSx SINE Alu -9 303 1 454 286 201 5 chr1 24219470 24219669 -218444684 + MIR SINE MIR 20 257 -5 2253 115 3 0 chr1 24219671 24219975 -218444378 + AluSg SINE Alu 1 305 -5 2198 114 10 0 chr1 24220480 24220779 -218443574 - AluSq SINE Alu -11 302 1 261 0 0 0 chr1 24221611 24221640 -218442713 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 815 182 134 27 chr1 24221673 24221860 -218442493 + AluSg/x SINE Alu 74 280 -32 1744 197 39 6 chr1 24221870 24222226 -218442127 + L1ME1 LINE L1 5733 6100 -66 1368 158 19 46 chr1 24222226 24222485 -218441868 + AluJo SINE Alu 29 280 -32 2273 58 0 41 chr1 24222485 24222776 -218441577 - AluY SINE Alu -6 305 27 335 238 94 99 chr1 24223360 24223541 -218440812 + MIR SINE MIR 54 233 -29 903 122 115 27 chr1 24223612 24223760 -218440593 + AluSq SINE Alu 131 291 -22 2376 86 10 0 chr1 24224047 24224349 -218440004 + AluSx SINE Alu 1 305 -7 286 275 104 44 chr1 24224666 24224848 -218439505 + MARNA DNA Mariner 107 299 -287 1742 171 10 3 chr1 24225000 24225293 -218439060 + AluJb SINE Alu 1 295 -17 1631 146 3 97 chr1 24225343 24225458 -218438895 + AluJo SINE Alu 1 125 -187 2110 114 0 0 chr1 24225458 24225768 -218438585 + AluSx SINE Alu 2 311 0 1631 146 3 97 chr1 24225768 24225972 -218438381 + AluJo SINE Alu 125 291 -21 2294 110 7 3 chr1 24226317 24226626 -218437727 + AluSg SINE Alu 1 310 0 1725 120 112 8 chr1 24226635 24226902 -218437451 + AluSg SINE Alu 3 297 -13 2486 58 0 3 chr1 24227007 24227300 -218437053 + AluY SINE Alu 1 292 -19 389 224 168 50 chr1 24227387 24227566 -218436787 + MIR SINE MIR 57 256 -6 255 278 0 14 chr1 24227568 24227640 -218436713 + MIR SINE MIR 177 247 -15 2344 102 0 3 chr1 24227652 24227957 -218436396 + AluSq SINE Alu 2 305 -8 671 329 108 9 chr1 24229059 24229403 -218434950 - L2 LINE L2 -15 3298 2921 657 147 54 23 chr1 24229435 24229564 -218434789 + FLAM_C SINE Alu 10 142 -1 2269 91 10 16 chr1 24229690 24229998 -218434355 + AluSg SINE Alu 1 306 -4 1087 164 45 81 chr1 24230058 24230368 -218433985 + L1ME3A LINE L1 5867 6165 -5 1752 62 0 0 chr1 24230386 24230597 -218433756 - AluY SINE Alu -11 300 90 665 168 0 0 chr1 24230652 24230759 -218433594 + U6 snRNA snRNA 1 107 0 2334 97 7 0 chr1 24230908 24231207 -218433146 + AluSg SINE Alu 1 301 -9 1711 153 19 39 chr1 24231216 24231524 -218432829 + AluJo SINE Alu 1 302 -10 377 212 186 0 chr1 24231769 24231882 -218432471 + MIR SINE MIR 45 178 -84 459 130 0 0 chr1 24231905 24231974 -218432379 + U6 snRNA snRNA 5 73 -34 2438 59 10 0 chr1 24232162 24232452 -218431901 + AluY SINE Alu 1 293 -18 646 157 0 0 chr1 24233204 24233317 -218431036 + L1ME1 LINE L1 6063 6161 -5 1380 195 0 16 chr1 24233338 24233595 -218430758 + AluJb SINE Alu 1 253 -59 182 36 0 36 chr1 24233610 24233638 -218430715 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 210 71 0 0 chr1 24233997 24234025 -218430328 + (A)n Simple_repeat Simple_repeat 1 28 0 214 307 0 27 chr1 24234093 24234168 -218430185 - MIR SINE MIR -102 106 34 413 287 43 55 chr1 24234169 24234321 -218430032 + MIR SINE MIR 3 151 -111 2359 82 10 7 chr1 24234321 24234626 -218429727 + AluSx SINE Alu 1 306 -6 413 287 43 55 chr1 24234626 24234731 -218429622 + MIR SINE MIR 151 256 -6 31 58 0 0 chr1 24235826 24235878 -218428475 + GC_rich Low_complexity Low_complexity 1 52 0 27 49 0 0 chr1 24235891 24235932 -218428421 + GC_rich Low_complexity Low_complexity 1 41 0 49 80 0 0 chr1 24236047 24236159 -218428194 + GC_rich Low_complexity Low_complexity 1 112 0 22 99 0 0 chr1 24236238 24236309 -218428044 + GC_rich Low_complexity Low_complexity 1 71 0 219 271 8 34 chr1 24236624 24236742 -218427611 + C-rich Low_complexity Low_complexity 5 119 0 1931 108 61 4 chr1 24237031 24237308 -218427045 + AluJb SINE Alu 7 299 -13 285 221 35 23 chr1 24237318 24237404 -218426949 + MIR SINE MIR 163 249 -13 417 264 18 42 chr1 24237427 24237594 -218426759 + MIR3 SINE MIR 17 179 -29 261 0 0 0 chr1 24237920 24237949 -218426404 + (CA)n Simple_repeat Simple_repeat 2 30 0 284 294 56 16 chr1 24238246 24238372 -218425981 + MIR SINE MIR 105 235 -27 2369 109 0 0 chr1 24238402 24238715 -218425638 - AluSq SINE Alu 0 313 1 1836 126 10 36 chr1 24238747 24239049 -218425304 + AluJb SINE Alu 1 294 -18 181 130 0 37 chr1 24239049 24239103 -218425250 + (TA)n Simple_repeat Simple_repeat 1 52 0 696 195 85 14 chr1 24239894 24240075 -218424278 + MIR SINE MIR 41 234 -28 1888 156 0 7 chr1 24240325 24240454 -218423899 + AluJo SINE Alu 1 129 -183 2100 133 0 3 chr1 24240454 24240763 -218423590 - AluSx SINE Alu -4 308 1 2202 90 38 0 chr1 24240772 24241061 -218423292 - AluSg SINE Alu -2 308 9 1888 156 0 7 chr1 24241061 24241228 -218423125 + AluJo SINE Alu 137 305 -7 202 222 0 0 chr1 24241245 24241290 -218423063 + T-rich Low_complexity Low_complexity 2 46 0 1914 163 3 10 chr1 24241292 24241605 -218422748 - AluSx SINE Alu -1 311 1 2526 143 71 69 chr1 24241954 24242473 -218421880 - MLT2B1 LTR ERVL 0 520 1 279 0 0 0 chr1 24242878 24242909 -218421444 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 182 333 0 0 chr1 24242910 24242976 -218421377 - MIR SINE MIR -7 255 190 259 273 39 0 chr1 24243042 24243119 -218421234 - MIR SINE MIR -110 152 73 236 278 89 22 chr1 24243207 24243297 -218421056 + MIR SINE MIR 69 164 -98 193 300 67 33 chr1 24243480 24243570 -218420783 + L2 LINE L2 3139 3231 -41 195 280 0 0 chr1 24243595 24243645 -218420708 - L2 LINE L2 -1 3271 3222 264 256 37 0 chr1 24243768 24243850 -218420503 - L2 LINE L2 -164 3108 3024 478 216 0 10 chr1 24243851 24243953 -218420400 - MIR SINE MIR -141 121 21 2334 99 0 10 chr1 24244011 24244313 -218420040 - AluSx SINE Alu -13 299 1 1997 138 0 32 chr1 24244827 24245138 -218419215 - AluJo SINE Alu -10 302 2 228 301 41 49 chr1 24245361 24245484 -218418869 + MIR SINE MIR 24 145 -117 21 36 0 0 chr1 24245649 24245677 -218418676 + GC_rich Low_complexity Low_complexity 1 28 0 323 277 72 0 chr1 24246103 24246186 -218418167 - MIR SINE MIR -88 174 86 491 356 64 9 chr1 24246218 24246437 -218417916 - MIR SINE MIR -24 238 8 213 299 60 0 chr1 24246461 24246528 -218417825 + L2 LINE L2 3218 3288 -25 187 336 9 36 chr1 24246597 24246707 -218417646 - L3 LINE CR1 -74 1503 1397 2165 127 7 0 chr1 24246736 24247027 -218417326 - AluSx SINE Alu -19 293 1 658 264 164 68 chr1 24247177 24247560 -218416793 + MLT1J1 LTR MaLR 14 433 -13 186 333 0 43 chr1 24247579 24247648 -218416705 + L2 LINE L2 3233 3298 -15 671 292 19 56 chr1 24247989 24248194 -218416159 + MIR SINE MIR 3 197 -65 2360 110 3 0 chr1 24248194 24248503 -218415850 - AluSx SINE Alu -2 310 1 671 292 19 56 chr1 24248503 24248564 -218415789 + MIR SINE MIR 197 259 -3 2186 86 0 21 chr1 24248715 24248995 -218415358 - AluSg SINE Alu 0 310 37 293 301 0 78 chr1 24249157 24249271 -218415082 + MIR SINE MIR 94 193 -69 2511 96 3 0 chr1 24249271 24249583 -218414770 + AluSp SINE Alu 1 313 0 293 301 0 78 chr1 24249583 24249634 -218414719 + MIR SINE MIR 193 246 -16 1284 192 120 8 chr1 24249744 24250010 -218414343 + AluSg SINE Alu 1 296 -14 2437 84 0 13 chr1 24250011 24250320 -218414033 + AluY SINE Alu 2 306 -5 583 298 20 83 chr1 24250547 24250692 -218413661 - MIR SINE MIR -15 247 123 2199 129 0 16 chr1 24250692 24251009 -218413344 + AluSx SINE Alu 1 312 0 583 298 20 83 chr1 24251009 24251115 -218413238 - MIR SINE MIR -139 123 12 289 323 25 43 chr1 24251401 24251444 -218412909 + L2 LINE L2 2625 2667 -647 2254 125 0 0 chr1 24251444 24251747 -218412606 - AluSx SINE Alu -9 303 1 289 323 25 43 chr1 24251747 24251864 -218412489 + L2 LINE L2 2667 2782 -532 197 62 0 31 chr1 24252418 24252450 -218411903 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 1535 149 0 0 chr1 24252475 24252696 -218411657 - AluJb SINE Alu -91 221 1 285 250 36 36 chr1 24252999 24253063 -218411290 + MIR3 SINE MIR 89 155 -53 2272 106 3 0 chr1 24253063 24253355 -218410998 + AluSx SINE Alu 1 293 -19 285 250 36 36 chr1 24253355 24253402 -218410951 + MIR3 SINE MIR 154 200 -8 348 242 32 0 chr1 24253443 24253538 -218410815 + L2 LINE L2 3193 3290 -23 459 335 94 38 chr1 24253547 24253813 -218410540 + L3 LINE CR1 987 1267 -310 272 296 34 0 chr1 24253929 24254017 -218410336 + MIR SINE MIR 55 145 -63 375 92 0 0 chr1 24254045 24254106 -218410247 - Alu SINE Alu -254 48 1 2287 108 10 3 chr1 24254175 24254482 -218409871 + AluSq SINE Alu 1 309 -4 2246 93 0 27 chr1 24254557 24254858 -218409495 + AluSc SINE Alu 5 297 -12 1940 171 0 3 chr1 24254975 24255280 -218409073 - AluJb SINE Alu -5 307 4 473 255 0 0 chr1 24255280 24255386 -218408967 + MIR SINE MIR 61 166 -96 185 290 32 16 chr1 24255432 24255494 -218408859 + MIR3 SINE MIR 146 208 0 330 26 0 0 chr1 24255935 24255974 -218408379 + (TG)n Simple_repeat Simple_repeat 2 40 0 268 219 68 0 chr1 24256062 24256135 -218408218 - MIR SINE MIR -85 177 100 768 252 106 18 chr1 24256248 24256474 -218407879 + MIR SINE MIR 16 261 -1 1077 168 0 0 chr1 24256695 24256868 -218407485 + FAM SINE Alu 1 173 -2 2300 88 17 0 chr1 24257122 24257418 -218406935 - AluSp SINE Alu -12 301 1 2232 122 0 0 chr1 24257446 24257741 -218406612 - AluJb SINE Alu -17 295 1 1622 147 122 4 chr1 24258159 24258438 -218405915 - AluJo SINE Alu 0 312 1 211 229 49 0 chr1 24258623 24258684 -218405669 - MIR SINE MIR -107 155 92 1768 157 64 7 chr1 24258684 24258965 -218405388 + AluJb SINE Alu 1 297 -15 2438 100 0 0 chr1 24258966 24259277 -218405076 + AluSq SINE Alu 1 311 -2 205 250 18 98 chr1 24259285 24259359 -218404994 - MIR SINE MIR -157 105 41 2036 153 0 3 chr1 24259359 24259654 -218404699 - AluJb SINE Alu -9 303 10 205 250 18 98 chr1 24259654 24259691 -218404662 - MIR SINE MIR -221 41 3 2365 97 10 0 chr1 24260508 24260808 -218403545 + AluSc SINE Alu 1 303 -6 21 0 0 0 chr1 24260955 24260976 -218403377 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr1 24262354 24262380 -218401973 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2280 103 7 0 chr1 24263393 24263684 -218400669 - AluSg SINE Alu -17 293 1 251 246 0 0 chr1 24263693 24263754 -218400599 + MER21B LTR ERV1 407 467 -396 1777 147 3 43 chr1 24263775 24264075 -218400278 - AluJo SINE Alu -10 302 15 2297 101 10 0 chr1 24264111 24264409 -218399944 + AluSp SINE Alu 1 301 -12 330 294 121 16 chr1 24264572 24264764 -218399589 - MIR SINE MIR -1 261 51 2225 101 30 0 chr1 24265397 24265693 -218398660 + AluSx SINE Alu 1 305 -7 782 150 8 15 chr1 24265703 24265836 -218398517 + FLAM_C SINE Alu 1 132 -1 646 135 0 0 chr1 24265937 24266033 -218398320 + FLAM_A SINE Alu 37 132 -10 2395 50 40 24 chr1 24266038 24266336 -218398017 + AluY SINE Alu 1 303 -8 677 304 70 38 chr1 24266337 24266807 -218397546 + L1ME3 LINE L1 5509 5993 -169 1474 90 147 19 chr1 24266864 24267075 -218397278 - AluSg SINE Alu -72 238 1 1846 161 0 7 chr1 24267075 24267354 -218396999 - AluJo SINE Alu -25 287 11 1036 178 43 0 chr1 24267373 24267558 -218396795 - AluJo SINE Alu 0 312 120 2106 142 0 16 chr1 24267641 24267952 -218396401 - AluSx SINE Alu -4 308 3 429 272 19 0 chr1 24268056 24268159 -218396194 + MIR SINE MIR 41 145 -63 323 238 175 48 chr1 24268277 24268466 -218395887 + MIR SINE MIR 8 220 -42 685 175 0 0 chr1 24268478 24268622 -218395731 - FLAM_C SINE Alu 0 144 1 335 240 48 40 chr1 24268993 24269118 -218395235 + MLT1K LTR MaLR 155 280 -308 1896 158 3 19 chr1 24269490 24269801 -218394552 - AluJb SINE Alu -6 306 1 359 272 91 10 chr1 24269802 24270001 -218394352 + MIR SINE MIR 38 252 -10 2049 131 13 19 chr1 24270003 24270341 -218394012 - AluSx SINE Alu 0 312 1 270 210 86 12 chr1 24270762 24270843 -218393510 + MIR SINE MIR 117 203 -59 2093 94 56 0 chr1 24270860 24271147 -218393206 - AluSx SINE Alu -9 303 1 1925 172 10 0 chr1 24271326 24271623 -218392730 + AluJo SINE Alu 1 300 -12 639 263 1 7 chr1 24271636 24271811 -218392542 + L1ME LINE L1 5592 5766 -398 835 147 15 29 chr1 24271811 24271947 -218392406 + FLAM_C SINE Alu 1 134 -9 900 87 8 0 chr1 24271953 24272079 -218392274 + THE1B LTR MaLR 198 324 -40 2557 48 3 3 chr1 24272079 24272373 -218391980 - AluY SINE Alu -17 294 1 210 298 0 0 chr1 24272376 24272433 -218391920 + MIR SINE MIR 119 175 -87 206 191 24 0 chr1 24272442 24272484 -218391869 - MIR SINE MIR -94 114 72 1076 218 151 65 chr1 24272532 24272840 -218391513 + MLT1H LTR MaLR 80 437 -112 3234 116 10 4 chr1 24272840 24273347 -218391006 + L1PB1 LINE L1 5640 6149 -2 1076 218 151 65 chr1 24273347 24273469 -218390884 + MLT1H LTR MaLR 437 547 -2 2233 98 14 0 chr1 24273495 24273790 -218390563 - AluSq SINE Alu -14 299 1 436 282 78 95 chr1 24273867 24273994 -218390359 + L2 LINE L2 2560 2688 -584 2268 70 42 3 chr1 24273994 24274278 -218390075 - AluY SINE Alu -16 295 1 436 282 78 95 chr1 24274278 24274805 -218389548 + L2 LINE L2 2688 3226 -46 574 253 19 19 chr1 24274849 24275003 -218389350 + MIR3 SINE MIR 7 160 -48 287 300 56 67 chr1 24275003 24275065 -218389288 + MER5B DNA MER1_type 1 62 -116 2123 111 3 36 chr1 24275065 24275372 -218388981 + AluSx SINE Alu 1 297 -15 287 300 56 67 chr1 24275372 24275489 -218388864 + MER5B DNA MER1_type 62 178 0 2309 106 3 7 chr1 24275708 24276011 -218388342 - AluSx SINE Alu -10 302 1 1013 128 7 0 chr1 24276096 24276237 -218388116 + AluJo SINE Alu 1 142 -170 2363 112 3 0 chr1 24276238 24276550 -218387803 + AluSq SINE Alu 1 313 0 216 0 0 0 chr1 24276574 24276598 -218387755 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 456 241 43 9 chr1 24276637 24276753 -218387600 - MIR3 SINE MIR -42 166 47 758 159 185 51 chr1 24276758 24276939 -218387414 + MER33 DNA MER1_type 12 167 -2418 2272 104 7 13 chr1 24276939 24277248 -218387105 - AluSx SINE Alu -5 307 1 758 159 185 51 chr1 24277248 24277342 -218387011 + MER33 DNA MER1_type 167 324 0 818 245 30 47 chr1 24277505 24277738 -218386615 - MIR SINE MIR 0 262 34 211 219 0 0 chr1 24277811 24277852 -218386501 - L2 LINE L2 -7 3265 3225 285 246 263 9 chr1 24277950 24278029 -218386324 - MER5A DNA MER1_type -6 183 125 2039 155 20 0 chr1 24278029 24278326 -218386027 - AluSx SINE Alu -9 303 1 285 246 263 9 chr1 24278326 24278360 -218385993 - MER5A DNA MER1_type -64 125 41 555 211 112 6 chr1 24278424 24278585 -218385768 - MIR3 SINE MIR -15 193 16 398 269 85 14 chr1 24279065 24279206 -218385147 + MIR SINE MIR 31 181 -81 459 0 0 0 chr1 24279558 24279609 -218384744 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1674 182 10 19 chr1 24279609 24279911 -218384442 - AluJo SINE Alu -13 299 1 2226 124 3 3 chr1 24280775 24281074 -218383279 - AluSx SINE Alu -13 299 1 1955 102 11 4 chr1 24281189 24281454 -218382899 + AluSc SINE Alu 39 305 -4 700 197 8 0 chr1 24281674 24281806 -218382547 - FLAM_C SINE Alu 0 133 1 267 253 226 32 chr1 24281832 24282018 -218382335 + L2 LINE L2 3020 3241 -31 1944 157 0 0 chr1 24282093 24282373 -218381980 + AluJb SINE Alu 1 280 -32 216 0 0 0 chr1 24282374 24282398 -218381955 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 424 200 36 36 chr1 24282412 24282522 -218381831 + L2 LINE L2 2742 2851 -463 288 270 127 66 chr1 24282507 24282766 -218381587 + L2 LINE L2 2998 3272 -41 * 508 271 133 26 chr1 24282794 24283083 -218381270 - L2 LINE L2 -1048 2266 1934 2088 153 0 0 chr1 24283083 24283390 -218380963 + AluJb SINE Alu 1 307 -5 508 271 133 26 chr1 24283390 24283439 -218380914 - L2 LINE L2 -1380 1934 1892 207 0 0 0 chr1 24284219 24284242 -218380111 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 250 350 0 0 chr1 24284356 24284496 -218379857 + (CA)n Simple_repeat Simple_repeat 1 140 0 318 264 11 0 chr1 24285045 24285136 -218379217 - LTR33 LTR ERVL -429 92 1 356 216 60 43 chr1 24285802 24285918 -218378435 + MIR SINE MIR 36 153 -55 2215 129 0 3 chr1 24285973 24286283 -218378070 + AluSg SINE Alu 1 309 -1 1613 141 15 41 chr1 24286303 24286573 -218377780 + AluJo SINE Alu 50 312 0 281 287 0 28 chr1 24286808 24286916 -218377437 + MIR SINE MIR 158 262 0 221 263 51 68 chr1 24287333 24287451 -218376902 + MIR SINE MIR 31 146 -62 2263 128 0 0 chr1 24287642 24287946 -218376407 + AluSx SINE Alu 1 304 -8 1902 153 23 10 chr1 24287947 24288255 -218376098 + AluJb SINE Alu 1 312 0 956 163 36 50 chr1 24288304 24288525 -218375828 - MER20 DNA MER1_type 0 219 2 1974 132 30 7 chr1 24288743 24289047 -218375306 - AluJb SINE Alu -1 311 1 2257 77 0 95 chr1 24289394 24289730 -218374623 + AluSq SINE Alu 1 304 -9 253 315 67 0 chr1 24291606 24291695 -218372658 - MIR SINE MIR -118 144 50 189 277 32 64 chr1 24292099 24292193 -218372160 - L2 LINE L2 -2 3270 3180 * 536 281 68 11 chr1 24292174 24292372 -218371981 + MIR SINE MIR 8 215 -47 396 0 0 0 chr1 24292631 24292675 -218371678 + (ATG)n Simple_repeat Simple_repeat 3 46 0 544 214 10 0 chr1 24293063 24293161 -218371192 - MER81 DNA DNA -14 100 2 479 253 136 40 chr1 24293771 24293969 -218370384 + MIR SINE MIR 40 256 -6 2385 59 3 3 chr1 24294017 24294306 -218370047 + AluY SINE Alu 7 295 -16 32 75 0 0 chr1 24294316 24294383 -218369970 + AT_rich Low_complexity Low_complexity 1 67 0 2425 78 3 0 chr1 24294387 24294680 -218369673 + AluSq SINE Alu 1 294 -19 2016 115 35 10 chr1 24295412 24295700 -218368653 + AluSg SINE Alu 1 295 -15 686 155 0 0 chr1 24296321 24296424 -218367929 - MER46A DNA MER2_type -89 147 45 2139 135 35 11 chr1 24297325 24297696 -218366657 + L1MB2 LINE L1 5789 6168 -3 1208 84 0 7 chr1 24297738 24297892 -218366461 - AluSx SINE Alu -159 153 1 1748 154 85 3 chr1 24297965 24298283 -218366070 - MER7A DNA MER2_type -4 342 1 965 200 0 0 chr1 24298320 24298480 -218365873 - FRAM SINE Alu -6 160 1 427 288 26 0 chr1 24298482 24298635 -218365718 - L1ME LINE L1 -366 5755 5599 781 208 56 19 chr1 24298649 24298865 -218365488 - HAL1 LINE L1 -6 2501 2278 252 0 0 0 chr1 24298866 24298894 -218365459 + (TA)n Simple_repeat Simple_repeat 1 28 0 2376 49 3 3 chr1 24298895 24299183 -218365170 - AluY SINE Alu -23 288 1 2115 146 0 0 chr1 24299365 24299674 -218364679 + AluJb SINE Alu 1 309 -3 213 242 32 16 chr1 24299764 24299826 -218364527 + L3 LINE CR1 1165 1227 -350 222 296 42 0 chr1 24299831 24299902 -218364451 - MIR SINE MIR -158 104 31 279 329 154 6 chr1 24300078 24300403 -218363950 - L2 LINE L2 -1000 2314 1942 13508 17 2 2 chr1 24304769 24306477 -218357876 - L1P1 LINE L1 -608 5547 3839 1016 81 22 7 chr1 24306477 24306613 -218357740 - AluSq/x SINE Alu -175 138 1 1800 232 45 13 chr1 24306613 24307164 -218357189 - L1M4 LINE L1 -3173 2973 2405 319 248 110 28 chr1 24307200 24307345 -218357008 + L1ME2 LINE L1 3325 3481 -2665 1000 138 0 0 chr1 24307445 24307583 -218356770 - AluSq/x SINE Alu -174 138 1 1578 214 35 38 chr1 24307585 24308038 -218356315 + L1ME2 LINE L1 5578 6029 -135 237 180 20 0 chr1 24308089 24308139 -218356214 + LTR66 LTR ERVL 395 445 -165 341 183 0 0 chr1 24308139 24308210 -218356143 + L1ME2 LINE L1 6093 6163 -1 1484 177 51 4 chr1 24308244 24308523 -218355830 + AluJo SINE Alu 17 307 0 2753 107 90 2 chr1 24308809 24309221 -218355132 - MER83 LTR ERV1 0 448 1 2018 118 10 3 chr1 24309230 24309519 -218354834 + MSTC LTR MaLR 138 428 0 279 219 0 37 chr1 24309684 24309766 -218354587 + L1MC5 LINE L1 7072 7150 -811 1949 155 3 3 chr1 24309779 24310069 -218354284 + AluJb SINE Alu 1 290 -22 235 118 0 0 chr1 24310075 24310109 -218354244 + L1MC4 LINE L1 7210 7243 -799 865 207 40 55 chr1 24310160 24310471 -218353882 + L1MC5 LINE L1 7269 7415 -393 1825 236 86 6 chr1 24310471 24310950 -218353403 + LTR40a LTR ERVL 1 517 -2 329 217 0 0 chr1 24310964 24311024 -218353329 + HERVL40 LTR ERVL 17 76 -5454 1919 175 37 52 chr1 24311055 24311513 -218352840 + MLT1D LTR MaLR 21 471 -34 31 0 0 0 chr1 24311733 24311764 -218352589 + AT_rich Low_complexity Low_complexity 1 31 0 700 185 0 0 chr1 24311767 24311886 -218352467 - FLAM_C SINE Alu -14 119 1 2228 58 0 18 chr1 24312615 24312891 -218351462 - AluSq SINE Alu -16 297 27 703 253 164 68 chr1 24313105 24313488 -218350865 + MLT1J1 LTR MaLR 14 433 -13 451 284 26 0 chr1 24313917 24314033 -218350320 + MIR SINE MIR 3 121 -141 2374 97 0 0 chr1 24314148 24314446 -218349907 - AluSx SINE Alu -14 298 1 2140 87 0 22 chr1 24314663 24314939 -218349414 - AluSg SINE Alu -4 306 37 257 295 0 83 chr1 24315111 24315215 -218349138 + MIR SINE MIR 104 192 -70 2481 96 3 0 chr1 24315215 24315527 -218348826 + AluSp SINE Alu 1 313 0 257 295 0 83 chr1 24315527 24315578 -218348775 + MIR SINE MIR 192 246 -16 1208 199 120 8 chr1 24315688 24315954 -218348399 + AluSg SINE Alu 1 296 -14 2409 81 0 13 chr1 24315955 24316262 -218348091 + AluY SINE Alu 2 304 -7 421 247 21 10 chr1 24316489 24316634 -218347719 - MIR SINE MIR -15 247 102 1998 125 10 17 chr1 24316634 24316929 -218347424 + AluSx SINE Alu 1 293 -19 646 157 0 0 chr1 24317681 24317794 -218346559 + L1ME1 LINE L1 6063 6161 -5 1380 195 0 16 chr1 24317815 24318072 -218346281 + AluJb SINE Alu 1 253 -59 182 36 0 36 chr1 24318087 24318115 -218346238 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 210 71 0 0 chr1 24318474 24318502 -218345851 + (A)n Simple_repeat Simple_repeat 1 28 0 214 307 0 27 chr1 24318570 24318645 -218345708 - MIR SINE MIR -102 106 34 357 231 54 75 chr1 24318646 24318793 -218345560 + MIR3 SINE MIR 3 146 -62 2004 125 13 10 chr1 24318798 24319103 -218345250 + AluSx SINE Alu 1 306 -6 953 158 19 0 chr1 24319231 24319389 -218344964 - AluSx SINE Alu -151 161 1 292 292 80 29 chr1 24319632 24319769 -218344584 - MIR SINE MIR -33 229 86 261 0 0 0 chr1 24319785 24319814 -218344539 + (CAA)n Simple_repeat Simple_repeat 2 30 0 504 269 86 25 chr1 24319835 24320032 -218344321 - MIR SINE MIR -26 236 28 188 272 105 70 chr1 24320043 24320081 -218344272 + MIR SINE MIR 112 147 -115 2117 144 0 0 chr1 24320081 24320373 -218343980 + AluJb SINE Alu 1 292 -20 188 272 105 70 chr1 24320373 24320448 -218343905 + MIR SINE MIR 147 229 -33 1398 163 31 56 chr1 24320994 24321314 -218343039 + AluJo SINE Alu 1 312 0 379 265 175 5 chr1 24321561 24321750 -218342603 + MIR SINE MIR 29 249 -13 904 140 53 13 chr1 24322013 24322163 -218342190 + AluJb SINE Alu 136 291 -21 267 308 0 0 chr1 24322207 24322272 -218342081 - MIR SINE MIR -62 146 82 1878 81 116 8 chr1 24322444 24322702 -218341651 + AluSg SINE Alu 1 286 -24 21 0 0 0 chr1 24322703 24322724 -218341629 + AT_rich Low_complexity Low_complexity 1 21 0 422 252 170 19 chr1 24322741 24322947 -218341406 - MIR SINE MIR -16 246 10 2479 48 0 3 chr1 24323010 24323305 -218341048 - AluY SINE Alu -17 294 1 234 0 0 0 chr1 24323819 24323845 -218340508 + (T)n Simple_repeat Simple_repeat 1 26 0 1449 186 13 42 chr1 24324109 24324416 -218339937 + AluSx SINE Alu 4 301 -11 3173 139 65 57 chr1 24324916 24325118 -218339235 - L1MB7 LINE L1 -213 5971 5772 2079 126 3 14 chr1 24325118 24325411 -218338942 + AluSx SINE Alu 1 290 -22 3173 139 65 57 chr1 24325411 24325739 -218338614 - L1MB7 LINE L1 -412 5772 5430 2248 119 0 0 chr1 24325739 24326033 -218338320 - AluSq SINE Alu -19 294 1 3173 139 65 57 chr1 24326033 24326274 -218338079 - L1MB7 LINE L1 -754 5430 5192 2243 102 17 0 chr1 24326457 24326750 -218337603 - AluSx SINE Alu -14 298 1 329 299 91 13 chr1 24326754 24326908 -218337445 - L1MC3 LINE L1 -1567 6218 6053 * 1159 206 183 3 chr1 24326903 24327214 -218337139 - L1ME LINE L1 -405 5761 5395 3393 77 21 10 chr1 24327640 24328120 -218336233 + L1MA1 LINE L1 5660 6144 -158 2421 77 0 0 chr1 24328126 24328413 -218335940 - AluSg1 SINE Alu -22 287 1 24 0 0 0 chr1 24328413 24328437 -218335916 + AT_rich Low_complexity Low_complexity 1 24 0 270 270 20 60 chr1 24328542 24328642 -218335711 + L2 LINE L2 3173 3268 -45 1368 49 71 5 chr1 24329246 24329430 -218334923 - MLT2A2 LTR ERVL 0 453 258 307 197 16 0 chr1 24329531 24329592 -218334761 + MER21B LTR ERV1 369 430 -433 260 309 12 0 chr1 24329633 24329717 -218334636 + MER21B LTR ERV1 25 109 -754 1535 185 130 5 chr1 24329718 24330102 -218334251 + MER21B LTR ERV1 431 862 -1 398 179 0 0 chr1 24330108 24330175 -218334178 - LTR40a LTR ERVL -449 70 4 912 192 53 107 chr1 24330177 24330458 -218333895 - HERVL40 LTR ERVL -3 5527 5262 731 302 71 44 chr1 24330418 24330828 -218333525 - MER89-int LTR ERV1 -298 6503 6083 * 2275 81 32 16 chr1 24330983 24331291 -218333062 + AluSq SINE Alu 1 313 0 1787 237 89 18 chr1 24331436 24331950 -218332403 - MER92C LTR ERV1 -3 551 1 827 329 19 24 chr1 24332238 24332649 -218331704 - MER92C-int LTR ERV1 -248 6553 6145 324 189 54 0 chr1 24332658 24332732 -218331621 - HERVL40 LTR ERVL -1284 4246 4169 1153 201 73 7 chr1 24332835 24333109 -218331244 - L1ME LINE L1 -1239 4907 4616 520 236 175 13 chr1 24333117 24333345 -218331008 + L1M4 LINE L1 2562 2829 -3317 24 0 0 0 chr1 24333522 24333546 -218330807 + AT_rich Low_complexity Low_complexity 1 24 0 2001 163 46 107 chr1 24333925 24334422 -218329931 + MLT1C LTR MaLR 1 467 0 2163 150 18 14 chr1 24334422 24334897 -218329456 + MLT1C-int LTR MaLR 1 590 -781 1353 96 6 0 chr1 24334997 24335175 -218329178 - AluY SINE Alu -132 179 1 486 166 93 58 chr1 24335196 24335245 -218329108 - L1ME LINE L1 -3652 2494 2448 895 125 0 0 chr1 24335245 24335414 -218328939 - FLAM_C SINE Alu 0 169 1 486 166 93 58 chr1 24335414 24335502 -218328851 - L1ME LINE L1 -3698 2448 2351 2716 39 0 0 chr1 24336188 24336498 -218327855 + AluYa8 SINE Alu 1 310 0 366 296 64 61 chr1 24336678 24337151 -218327202 - L2 LINE L2 -89 3183 2711 599 295 0 30 chr1 24337538 24337738 -218326615 + MIR SINE MIR 48 241 -21 339 260 77 0 chr1 24337801 24337905 -218326448 + L2 LINE L2 3136 3247 -25 339 25 0 0 chr1 24337910 24337950 -218326403 + (TGGA)n Simple_repeat Simple_repeat 2 41 0 2110 133 3 3 chr1 24338368 24338677 -218325676 - AluSx SINE Alu -3 309 1 276 100 0 0 chr1 24338679 24338719 -218325634 + (TG)n Simple_repeat Simple_repeat 1 40 0 386 241 131 7 chr1 24338720 24338857 -218325496 - MIR SINE MIR -35 227 74 249 296 98 23 chr1 24339091 24339223 -218325130 - MIR3 SINE MIR -9 199 58 * 598 256 134 0 chr1 24339210 24339382 -218324971 + MIR SINE MIR 20 214 -48 1823 171 0 3 chr1 24339392 24339694 -218324659 - AluSx SINE Alu 0 301 1 4725 104 41 38 chr1 24339737 24340885 -218323468 - MER11A LTR ERVK 0 1266 1 1743 166 15 0 chr1 24340888 24341159 -218323194 - AluJo SINE Alu -36 276 2 185 79 0 53 chr1 24341247 24341285 -218323068 - MIR SINE MIR -153 55 20 2558 52 0 7 chr1 24342039 24342345 -218322008 + AluY SINE Alu 1 304 -7 508 194 136 0 chr1 24342372 24342475 -218321878 + AluJo/FLAM SINE Alu 1 117 -185 1752 117 8 0 chr1 24342475 24342723 -218321630 + AluSq SINE Alu 36 285 -28 5881 91 42 74 chr1 24342729 24343317 -218321036 - L1MA3 LINE L1 -79 6226 5682 2313 94 3 3 chr1 24343317 24343625 -218320728 - AluSc SINE Alu -1 308 1 5881 91 42 74 chr1 24343625 24344041 -218320312 - L1MA3 LINE L1 -623 5682 5254 670 119 50 0 chr1 24344048 24344149 -218320204 + MLT1D LTR MaLR 400 505 0 405 251 27 9 chr1 24344159 24344285 -218320068 - MER31-int LTR ERV1 -474 5789 4108 2070 114 28 0 chr1 24344292 24344581 -218319772 + AluSx SINE Alu 1 297 -15 458 62 16 0 chr1 24344730 24344794 -218319559 - Alu SINE Alu -252 66 2 363 127 0 16 chr1 24344805 24344868 -218319485 + MER69 DNA AcHobo 2462 2523 -3 345 292 71 0 chr1 24344913 24345067 -218319286 + MIR SINE MIR 97 261 -1 1588 169 3 91 chr1 24345236 24345567 -218318786 + AluSq SINE Alu 2 303 -10 267 31 0 0 chr1 24345729 24345761 -218318592 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 940 170 181 6 chr1 24345764 24345935 -218318418 - AluSg/x SINE Alu -25 284 84 768 101 13 128 chr1 24346126 24346236 -218318117 + AluJo/FLAM SINE Alu 1 91 -211 2500 71 0 3 chr1 24346236 24346544 -218317809 - AluY SINE Alu -3 308 2 768 101 13 128 chr1 24346544 24346582 -218317771 + AluJo/FLAM SINE Alu 91 132 -170 468 228 0 0 chr1 24346582 24346674 -218317679 + AluJb SINE Alu 208 299 -13 214 203 228 13 chr1 24346711 24346790 -218317563 + MIR3 SINE MIR 101 196 -12 425 233 163 0 chr1 24347262 24347391 -218316962 - MIR SINE MIR 0 262 113 36 23 0 0 chr1 24347397 24347440 -218316913 + AT_rich Low_complexity Low_complexity 1 43 0 666 92 0 0 chr1 24347442 24347529 -218316824 - AluSc SINE Alu -91 218 132 2487 65 0 16 chr1 24347529 24347835 -218316518 - AluY SINE Alu -10 301 1 1898 133 0 62 chr1 24347843 24348152 -218316201 - AluJb SINE Alu -22 290 1 320 284 25 0 chr1 24348157 24348223 -218316130 - MIR SINE MIR -174 88 18 2270 120 3 0 chr1 24348223 24348524 -218315829 - AluSx SINE Alu -10 302 1 320 284 25 0 chr1 24348524 24348538 -218315815 - MIR SINE MIR -244 18 6 536 252 9 0 chr1 24348570 24348685 -218315668 - MIR SINE MIR -93 169 54 7090 66 22 19 chr1 24348700 24350348 -218314005 - SVA Other Other -686 1379 1 231 36 0 0 chr1 24350349 24350377 -218313976 + (GA)n Simple_repeat Simple_repeat 1 28 0 2170 132 0 3 chr1 24351071 24351375 -218312978 - AluSx SINE Alu -7 305 3 25 0 0 0 chr1 24351752 24351777 -218312576 + AT_rich Low_complexity Low_complexity 1 25 0 1539 147 0 0 chr1 24355591 24355815 -218308538 - AluSg/x SINE Alu -18 294 71 465 307 84 17 chr1 24355851 24356030 -218308323 - MIR SINE MIR -57 205 15 1906 155 3 10 chr1 24356054 24356351 -218308002 + AluJo SINE Alu 1 295 -17 2236 105 3 3 chr1 24356520 24356835 -218307518 - AluSq SINE Alu 0 315 1 386 220 35 98 chr1 24357156 24357272 -218307081 - MER103 DNA DNA -3 163 41 1848 169 0 45 chr1 24357272 24357409 -218306944 + AluJb SINE Alu 1 143 -169 2434 80 0 10 chr1 24357409 24357721 -218306632 + AluY SINE Alu 1 309 -2 2202 118 0 25 chr1 24357729 24358016 -218306337 + AluSx SINE Alu 1 281 -31 216 0 0 0 chr1 24358016 24358040 -218306313 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2202 118 0 25 chr1 24358040 24358066 -218306287 + AluSx SINE Alu 281 306 -6 1848 169 0 45 chr1 24358066 24358233 -218306120 + AluJb SINE Alu 150 300 -12 386 220 35 98 chr1 24358233 24358289 -218306064 - MER103 DNA DNA -125 41 2 261 280 130 30 chr1 24360012 24360112 -218304241 + L2 LINE L2 3151 3260 -12 27 0 0 0 chr1 24361241 24361268 -218303085 + GC_rich Low_complexity Low_complexity 1 27 0 588 107 0 0 chr1 24362552 24362636 -218301717 + HY4 scRNA scRNA 1 84 -9 375 262 213 6 chr1 24362700 24362883 -218301470 + MIR SINE MIR 2 222 -40 22 0 0 0 chr1 24364050 24364072 -218300281 + AT_rich Low_complexity Low_complexity 1 22 0 475 250 69 66 chr1 24364284 24364604 -218299749 - L2 LINE L2 -122 3150 2830 225 200 254 27 chr1 24365096 24365170 -218299183 + MIR SINE MIR 5 61 -201 2163 106 7 0 chr1 24365170 24365454 -218298899 + AluSg SINE Alu 13 298 -12 225 200 254 27 chr1 24365454 24365489 -218298864 + MIR SINE MIR 61 139 -123 847 149 56 104 chr1 24365491 24365675 -218298678 + L1MB2 LINE L1 5934 6104 -67 1910 155 7 0 chr1 24365675 24365959 -218298394 + AluSx SINE Alu 1 286 -26 847 149 56 104 chr1 24365959 24366023 -218298330 + L1MB2 LINE L1 6104 6170 -1 213 250 170 20 chr1 24366027 24366127 -218298226 + MIR SINE MIR 146 260 -2 * 727 239 32 11 chr1 24366106 24366294 -218298059 - MIR SINE MIR 0 262 71 239 316 60 17 chr1 24366402 24366519 -218297834 - L2 LINE L2 -181 3091 2970 1957 93 102 12 chr1 24366652 24367021 -218297332 + LTR7 LTR ERV1 1 450 0 2561 77 0 0 chr1 24367263 24367574 -218296779 + AluY SINE Alu 1 311 0 1825 138 0 77 chr1 24367771 24367910 -218296443 + AluJo SINE Alu 5 153 -159 1868 136 47 4 chr1 24367910 24368189 -218296164 - AluSx SINE Alu -20 292 2 1825 138 0 77 chr1 24368189 24368375 -218295978 + AluJo SINE Alu 153 305 -7 1694 191 11 3 chr1 24368380 24368663 -218295690 + AluJo SINE Alu 5 289 -23 2248 92 6 44 chr1 24368949 24369265 -218295088 - AluSx SINE Alu -8 304 1 323 252 84 49 chr1 24369449 24369592 -218294761 - L2 LINE L2 -279 2993 2846 2284 81 0 58 chr1 24370061 24370370 -218293983 + AluSg SINE Alu 1 291 -19 1918 111 41 4 chr1 24370380 24370676 -218293677 + AluSx SINE Alu 1 306 0 327 264 122 37 chr1 24370808 24370862 -218293491 + MER5A DNA MER1_type 6 54 -135 2175 145 3 0 chr1 24370862 24371172 -218293181 + AluJo SINE Alu 1 311 -1 327 264 122 37 chr1 24371172 24371282 -218293071 + MER5A DNA MER1_type 54 186 -3 253 246 15 31 chr1 24371463 24371528 -218292825 + MIR SINE MIR 25 88 -120 2430 89 0 10 chr1 24371610 24371913 -218292440 + AluSq SINE Alu 1 300 -13 2088 137 0 3 chr1 24371924 24372238 -218292115 + AluSx SINE Alu 1 313 0 1859 136 0 4 chr1 24372463 24372721 -218291632 + AluSx SINE Alu 1 257 -55 210 26 77 0 chr1 24372726 24372765 -218291588 + A-rich Low_complexity Low_complexity 2 43 0 268 98 0 39 chr1 24373109 24373160 -218291193 - MADE1 DNA Mariner -31 49 1 699 196 15 15 chr1 24373380 24373513 -218290840 - FLAM_A SINE Alu 0 133 1 438 240 262 27 chr1 24373849 24374032 -218290321 + MIR SINE MIR 20 245 -17 695 200 77 82 chr1 24374249 24374349 -218290004 - MIR SINE MIR -11 251 151 2334 79 31 0 chr1 24374349 24374639 -218289714 - AluSp SINE Alu -14 299 1 695 200 77 82 chr1 24374639 24374733 -218289620 - MIR SINE MIR -111 151 58 844 253 39 0 chr1 24374785 24374963 -218289390 + MER91A DNA MER1_type 12 196 0 675 277 97 15 chr1 24374963 24375161 -218289192 - MIR SINE MIR -46 216 2 2603 58 0 3 chr1 24375297 24375607 -218288746 + AluY SINE Alu 1 309 -2 182 269 75 15 chr1 24375648 24375715 -218288638 + MIR SINE MIR 84 154 -108 196 258 275 25 chr1 24375781 24375901 -218288452 - MIR SINE MIR -76 186 37 1406 69 0 6 chr1 24376962 24377136 -218287217 - AluSg/x SINE Alu -9 303 131 180 216 0 0 chr1 24377197 24377234 -218287119 + L2 LINE L2 3019 3055 -217 328 258 67 0 chr1 24377263 24377352 -218287001 - MIR3 SINE MIR -11 197 103 274 267 81 0 chr1 24378234 24378320 -218286033 + MIR3 SINE MIR 109 201 -7 1802 127 0 99 chr1 24378507 24378831 -218285522 - AluJb SINE Alu -14 298 7 2291 110 0 7 chr1 24378849 24379024 -218285329 - AluSx SINE Alu -4 308 134 2379 85 0 0 chr1 24379024 24379318 -218285035 - AluY SINE Alu -16 295 2 2291 110 0 7 chr1 24379318 24379451 -218284902 - AluSx SINE Alu -178 134 2 2461 88 0 0 chr1 24380499 24380795 -218283558 - AluSc SINE Alu -13 296 1 1741 153 26 42 chr1 24380969 24381282 -218283071 - AluJb SINE Alu -4 308 1 2116 131 7 3 chr1 24381505 24381802 -218282551 + AluSq SINE Alu 1 298 -15 1158 110 6 12 chr1 24381802 24381966 -218282387 + AluSg/x SINE Alu 135 297 -13 651 218 0 98 chr1 24382040 24382214 -218282139 + MER63A DNA MER1_type 54 210 0 2167 119 6 38 chr1 24382486 24382805 -218281548 + AluSx SINE Alu 1 309 -3 317 229 143 19 chr1 24383187 24383292 -218281061 + L2 LINE L2 3155 3272 0 201 338 113 63 chr1 24383462 24383622 -218280731 + L2 LINE L2 3039 3214 -58 2021 95 46 7 chr1 24383622 24383907 -218280446 - AluSc SINE Alu -13 296 1 201 338 113 63 chr1 24383907 24383968 -218280385 + L2 LINE L2 3214 3271 -1 1734 164 4 0 chr1 24384214 24384488 -218279865 + AluJo SINE Alu 1 275 -37 457 111 28 0 chr1 24384509 24384581 -218279772 + AluSp/q SINE Alu 232 305 -8 757 199 192 8 chr1 24384588 24384737 -218279616 + L1MC4 LINE L1 7732 7852 -190 273 98 0 0 chr1 24384737 24384778 -218279575 + (CA)n Simple_repeat Simple_repeat 2 42 0 757 199 192 8 chr1 24384778 24384889 -218279464 + L1MC4 LINE L1 7852 8040 -2 2504 61 0 0 chr1 24384916 24385210 -218279143 - AluY SINE Alu -17 294 1 952 264 137 48 chr1 24385429 24385845 -218278508 - L2 LINE L2 -2 3311 2859 367 254 127 0 chr1 24385855 24385965 -218278388 + L2 LINE L2 2732 2855 -459 2350 95 3 13 chr1 24386032 24386337 -218278016 + AluSx SINE Alu 1 302 -10 213 218 55 36 chr1 24386584 24386639 -218277714 + MIR3 SINE MIR 130 185 -23 194 269 62 106 chr1 24386593 24386801 -218277552 - MIR3 SINE MIR -3 205 7 * 1012 248 67 17 chr1 24387414 24387713 -218276640 - MER21B LTR ERV1 -54 809 496 1190 98 0 23 chr1 24387718 24387891 -218276462 - AluSg/x SINE Alu -14 298 130 274 267 81 0 chr1 24389104 24389190 -218275163 + MIR3 SINE MIR 109 201 -7 1802 127 0 99 chr1 24389377 24389701 -218274652 - AluJb SINE Alu -14 298 7 2302 107 0 7 chr1 24389719 24389894 -218274459 - AluSx SINE Alu -4 308 134 2480 65 0 0 chr1 24389894 24390187 -218274166 - AluY SINE Alu -17 294 2 2302 107 0 7 chr1 24390187 24390320 -218274033 - AluSx SINE Alu -178 134 2 2468 85 0 0 chr1 24391370 24391665 -218272688 - AluSc SINE Alu -14 295 1 850 169 14 27 chr1 24391861 24392009 -218272344 - AluJb SINE Alu -22 290 145 2204 110 20 0 chr1 24392673 24392974 -218271379 + AluSq SINE Alu 1 307 -6 2203 104 7 0 chr1 24393078 24393375 -218270978 + AluSq SINE Alu 1 299 -14 246 75 0 57 chr1 24393384 24393437 -218270916 + (GAAAA)n Simple_repeat Simple_repeat 5 54 0 414 178 40 30 chr1 24393439 24393540 -218270813 - MER69A DNA AcHobo -43 134 33 636 96 0 184 chr1 24393541 24393677 -218270676 - FLAM_C SINE Alu -13 130 20 258 119 24 0 chr1 24393682 24393724 -218270629 - MER69A DNA AcHobo -133 44 2 717 158 96 6 chr1 24393734 24393911 -218270442 - Charlie4 DNA MER1_type -6 1955 1763 2419 93 0 3 chr1 24393916 24394227 -218270126 - AluY SINE Alu -1 310 1 2534 56 0 3 chr1 24394606 24394909 -218269444 - AluY SINE Alu -9 302 1 215 250 0 0 chr1 24394916 24394968 -218269385 - MIR3 SINE MIR -6 202 151 2745 106 2 54 chr1 24395057 24395501 -218268852 + MER1A DNA MER1_type 1 421 -108 2501 14 0 11 chr1 24395527 24395812 -218268541 + AluYa5 SINE Alu 1 282 -29 609 101 0 0 chr1 24395912 24395991 -218268362 - AluS SINE Alu -233 80 2 519 227 84 92 chr1 24396005 24396248 -218268105 - MER21B LTR ERV1 -398 465 176 776 170 0 15 chr1 24396248 24396383 -218267970 - FLAM_C SINE Alu 0 133 1 519 227 84 92 chr1 24396383 24396558 -218267795 - MER21B LTR ERV1 -687 176 1 4222 84 11 6 chr1 24396588 24397137 -218267216 + MER41A LTR ERV1 3 554 0 354 164 0 45 chr1 24397234 24397301 -218267052 - AluSc SINE Alu -10 289 226 691 185 7 7 chr1 24397660 24397795 -218266558 + AluJb SINE Alu 2 136 -176 1751 176 22 26 chr1 24398258 24398571 -218265782 - AluJb SINE Alu 0 312 1 2045 91 16 52 chr1 24398580 24398889 -218265464 - AluSp SINE Alu -15 298 1 2074 141 3 3 chr1 24398890 24399196 -218265157 - AluSg SINE Alu -4 306 1 293 163 51 35 chr1 24399618 24399734 -218264619 + (CA)n Simple_repeat Simple_repeat 1 114 -615 3466 106 27 12 chr1 24399734 24400252 -218264101 - MER1A DNA MER1_type 0 527 2 293 163 51 35 chr1 24400252 24400336 -218264017 + (CA)n Simple_repeat Simple_repeat 114 729 0 600 274 59 10 chr1 24400431 24400635 -218263718 + MIR SINE MIR 33 246 -16 310 315 252 0 chr1 24401230 24401373 -218262980 + MIR SINE MIR 82 260 -2 273 282 35 0 chr1 24401462 24401547 -218262806 - MER103 DNA DNA -75 91 4 360 272 52 23 chr1 24401626 24401764 -218262589 - MIR3 SINE MIR -68 140 11 2316 100 0 7 chr1 24402458 24402759 -218261594 + AluSx SINE Alu 1 299 -13 376 298 48 8 chr1 24403483 24403607 -218260746 + MIR SINE MIR 104 232 -30 2201 124 3 10 chr1 24403636 24403942 -218260411 + AluSq SINE Alu 2 305 -8 507 355 11 11 chr1 24404070 24404259 -218260094 + MIR SINE MIR 7 195 -67 639 240 5 62 chr1 24404981 24405189 -218259164 - MIR SINE MIR -31 231 36 376 277 67 0 chr1 24405312 24405431 -218258922 - L2 LINE L2 0 3313 3187 559 254 94 66 chr1 24405443 24405667 -218258686 - MIR SINE MIR -7 255 22 1877 158 3 29 chr1 24405667 24405978 -218258375 - AluJb SINE Alu -5 307 5 559 254 94 66 chr1 24405978 24405997 -218258356 - MIR SINE MIR -240 22 5 435 38 0 0 chr1 24406041 24406094 -218258259 + (TA)n Simple_repeat Simple_repeat 2 54 0 1455 189 115 9 chr1 24406138 24406460 -218257893 - MLT1A2 LTR MaLR -18 356 1 2266 101 0 26 chr1 24406584 24406890 -218257463 - AluSx SINE Alu -14 298 1 1547 158 8 20 chr1 24407168 24407422 -218256931 - AluJo SINE Alu -60 252 2 316 283 121 10 chr1 24407707 24407806 -218256547 - MER91C DNA MER1_type -30 110 1 412 320 23 6 chr1 24408492 24408667 -218255686 + L2 LINE L2 2569 2746 -568 525 110 0 12 chr1 24408670 24408752 -218255601 + MER1B DNA MER1_type 1 81 -256 * 1277 122 5 5 chr1 24408741 24408930 -218255423 + MER1B DNA MER1_type 151 339 0 658 279 153 46 chr1 24408938 24408973 -218255380 + L2 LINE L2 2750 2780 -533 1972 171 3 0 chr1 24408973 24409283 -218255070 + AluSx SINE Alu 1 311 -1 658 279 153 46 chr1 24409283 24409760 -218254593 + L2 LINE L2 2780 3313 0 693 263 6 11 chr1 24410172 24410347 -218254006 + MIR SINE MIR 18 191 -71 499 264 68 0 chr1 24410412 24410560 -218253793 - MIR SINE MIR -13 249 92 263 364 36 32 chr1 24411185 24411405 -218252948 + L2 LINE L2 2892 3112 -160 813 264 23 72 chr1 24411509 24411591 -218252762 + Charlie8 DNA MER1_type 24 108 -2309 1871 129 31 28 chr1 24411591 24411878 -218252475 + AluJb SINE Alu 1 288 -24 813 264 23 72 chr1 24411878 24412060 -218252293 + Charlie8 DNA MER1_type 108 275 -2142 2311 96 0 3 chr1 24412230 24412522 -218251831 + AluSc SINE Alu 2 292 -17 348 224 40 104 chr1 24412781 24412988 -218251365 - MER20B DNA MER1_type -143 76 4 300 284 138 0 chr1 24413016 24413125 -218251228 - MER117 DNA MER1_type -43 154 31 1970 255 116 24 chr1 24413391 24413534 -218250819 + L2 LINE L2 2077 2205 -1108 1724 125 98 0 chr1 24413534 24413835 -218250518 - AluSx SINE Alu 0 326 1 1970 255 116 24 chr1 24413835 24414752 -218249601 + L2 LINE L2 2205 3311 -2 2353 92 0 52 chr1 24414838 24415190 -218249163 - AluSg SINE Alu 0 335 1 294 270 81 9 chr1 24415659 24415770 -218248583 + L2 LINE L2 2846 2964 -308 1910 141 0 17 chr1 24415987 24416285 -218248068 + AluSx SINE Alu 1 293 -19 757 121 0 64 chr1 24416285 24416425 -218247928 - AluJo/FLAM SINE Alu -170 132 2 2295 84 7 0 chr1 24416601 24416886 -218247467 + AluSg SINE Alu 21 307 -3 290 267 133 9 chr1 24417268 24417373 -218246980 + L2 LINE L2 3155 3272 0 2248 114 0 0 chr1 24417703 24418002 -218246351 - AluSx SINE Alu -13 299 1 649 217 0 103 chr1 24418274 24418449 -218245904 - MER63A DNA MER1_type 0 210 54 2226 113 14 0 chr1 24418523 24418816 -218245537 - AluSg SINE Alu -13 297 1 331 314 39 20 chr1 24419213 24419366 -218244987 + MIR SINE MIR 35 190 -72 298 218 0 13 chr1 24419543 24419621 -218244732 - MLT1B LTR MaLR -280 110 34 2532 81 0 0 chr1 24419623 24419932 -218244421 + AluY SINE Alu 1 309 -2 204 40 0 0 chr1 24419978 24420003 -218244350 + (CCA)n Simple_repeat Simple_repeat 2 26 0 1856 175 0 3 chr1 24420131 24420423 -218243930 - AluJo SINE Alu -18 294 4 453 186 0 0 chr1 24420641 24420727 -218243626 + MIR SINE MIR 102 187 -75 257 191 0 0 chr1 24420742 24420789 -218243564 - L2 LINE L2 -3 3310 3264 301 281 175 9 chr1 24421378 24421492 -218242861 + L2 LINE L2 3136 3268 -4 391 258 38 23 chr1 24422296 24422428 -218241925 - MIR3 SINE MIR -30 178 45 254 267 0 103 chr1 24422589 24422640 -218241713 - MIR SINE MIR -50 212 178 1154 120 17 81 chr1 24422640 24422874 -218241479 + MER20B DNA MER1_type 1 219 0 254 267 0 103 chr1 24422874 24422938 -218241415 - MIR SINE MIR -84 178 109 631 203 196 0 chr1 24422942 24423100 -218241253 + MIR SINE MIR 69 257 -5 1733 191 98 32 chr1 24424121 24424593 -218239760 - MLT1D LTR MaLR 0 505 3 577 311 133 20 chr1 24424611 24424859 -218239494 - Charlie8 DNA MER1_type -2141 276 1 22 35 0 0 chr1 24425368 24425397 -218238956 + AT_rich Low_complexity Low_complexity 1 29 0 650 181 155 20 chr1 24425641 24425847 -218238506 + MIR SINE MIR 31 262 0 343 329 42 30 chr1 24425982 24426149 -218238204 - MIR SINE MIR -77 185 17 338 288 69 16 chr1 24426637 24426794 -218237559 + MIR SINE MIR 18 176 -58 1418 127 5 32 chr1 24426798 24426851 -218237502 + AluJo SINE Alu 87 140 -172 2346 96 0 10 chr1 24426851 24427152 -218237201 + AluY SINE Alu 1 298 -13 1418 127 5 32 chr1 24427152 24427319 -218237034 + AluJo SINE Alu 140 301 -11 2840 176 45 45 chr1 24427332 24427921 -218236432 - L1MB7 LINE L1 0 6184 5593 2381 68 7 36 chr1 24427921 24428228 -218236125 - AluSp SINE Alu -15 298 1 2840 176 45 45 chr1 24428228 24428301 -218236052 - L1MB7 LINE L1 -590 5594 5522 271 277 24 12 chr1 24428301 24428384 -218235969 + MIR SINE MIR 174 257 -5 915 184 30 24 chr1 24428738 24428906 -218235447 + AluJo SINE Alu 1 169 -143 1132 188 62 26 chr1 24428907 24429122 -218235231 + MER33 DNA MER1_type 5 236 -2349 1981 151 3 7 chr1 24429122 24429414 -218234939 + AluJo SINE Alu 1 291 -21 1132 188 62 26 chr1 24429414 24429506 -218234847 + MER33 DNA MER1_type 236 323 -1 588 281 70 5 chr1 24429547 24429732 -218234621 - MIR SINE MIR -46 216 20 366 258 95 23 chr1 24429994 24430186 -218234167 - MIR3 SINE MIR -1 207 1 306 254 21 14 chr1 24431348 24431490 -218232863 + (CGGGG)n Simple_repeat Simple_repeat 2 144 0 2199 117 0 3 chr1 24431785 24432083 -218232270 + AluSx SINE Alu 1 297 -15 324 0 0 0 chr1 24432088 24432124 -218232229 + (CA)n Simple_repeat Simple_repeat 2 37 0 2080 111 7 34 chr1 24432178 24432338 -218232015 - AluSx SINE Alu -23 289 139 2392 76 0 7 chr1 24432338 24432640 -218231713 - AluY SINE Alu -11 300 1 2080 111 7 34 chr1 24432640 24432776 -218231577 - AluSx SINE Alu -173 139 1 420 220 40 10 chr1 24432857 24432957 -218231396 + MIR SINE MIR 45 147 -61 221 229 0 0 chr1 24433519 24433567 -218230786 - L2 LINE L2 -5 3308 3261 2485 93 0 0 chr1 24434029 24434340 -218230013 - AluSx SINE Alu -1 311 1 21 0 0 0 chr1 24434404 24434425 -218229928 + AT_rich Low_complexity Low_complexity 1 21 0 1662 104 142 19 chr1 24434682 24434950 -218229403 + AluSg1 SINE Alu 1 301 -8 491 211 16 39 chr1 24435218 24435346 -218229007 + MIR SINE MIR 17 141 -67 212 321 47 38 chr1 24435631 24435737 -218228616 - MIR SINE MIR -53 209 103 2381 93 0 0 chr1 24435984 24436275 -218228078 + AluSg SINE Alu 2 292 -18 200 278 0 103 chr1 24436278 24436375 -218227978 + MIR SINE MIR 19 105 -103 24 32 0 0 chr1 24436529 24436560 -218227793 + AT_rich Low_complexity Low_complexity 1 31 0 247 345 0 0 chr1 24436719 24436829 -218227524 + A-rich Low_complexity Low_complexity 1 110 0 238 235 73 0 chr1 24437493 24437561 -218226792 - MIR SINE MIR -67 141 69 186 213 85 0 chr1 24437841 24437888 -218226465 + L2 LINE L2 3263 3313 0 226 271 86 14 chr1 24437899 24437969 -218226384 - MIR SINE MIR -112 150 76 186 43 0 0 chr1 24437977 24438000 -218226353 + (GAA)n Simple_repeat Simple_repeat 2 24 0 195 297 30 69 chr1 24438304 24438405 -218225948 + MIR SINE MIR 42 138 -70 485 328 51 15 chr1 24438415 24438610 -218225743 - MIR3 SINE MIR -3 205 4 261 217 43 14 chr1 24440650 24440719 -218223634 - MIR SINE MIR -131 131 61 338 238 0 12 chr1 24442975 24443059 -218221294 + MIR SINE MIR 57 139 -123 210 154 26 0 chr1 24443238 24443277 -218221076 + MIR SINE MIR 81 120 -88 206 248 268 20 chr1 24443528 24443681 -218220672 - MIR SINE MIR -4 258 68 246 253 0 40 chr1 24443694 24443769 -218220584 - MIR SINE MIR -171 91 20 366 301 57 8 chr1 24444076 24444199 -218220154 - MIR SINE MIR -114 148 20 208 130 37 19 chr1 24444487 24444541 -218219812 + (CCCCG)n Simple_repeat Simple_repeat 2 56 0 335 327 0 9 chr1 24445718 24445828 -218218525 - MIR SINE MIR -82 126 18 2416 74 7 3 chr1 24446305 24446615 -218217738 - AluY SINE Alu 0 311 1 1779 119 72 18 chr1 24446658 24446936 -218217417 + AluSx SINE Alu 1 293 -19 202 268 0 75 chr1 24447534 24447583 -218216770 + MIR SINE MIR 51 102 -160 1625 176 65 7 chr1 24447583 24447873 -218216480 - AluJb SINE Alu -5 307 1 202 268 0 75 chr1 24447873 24447956 -218216397 + MIR SINE MIR 102 217 -45 346 276 75 0 chr1 24448204 24448385 -218215968 + MIR SINE MIR 51 252 -10 * 357 246 110 27 chr1 24448382 24448512 -218215841 - MIR SINE MIR -64 144 12 578 270 65 20 chr1 24448719 24448919 -218215434 + MIR SINE MIR 4 212 -50 2118 124 0 0 chr1 24448979 24449278 -218215075 - AluSx SINE Alu -13 299 1 1870 179 0 0 chr1 24449339 24449651 -218214702 - AluJb SINE Alu 0 312 1 1890 119 0 55 chr1 24449659 24449971 -218214382 - AluSx SINE Alu -17 295 1 556 206 167 33 chr1 24450048 24450228 -218214125 + MIR SINE MIR 59 262 0 528 242 132 11 chr1 24450671 24450861 -218213492 + MIR SINE MIR 38 250 -12 2247 83 0 16 chr1 24450935 24451248 -218213105 + AluY SINE Alu 1 308 -3 419 270 9 0 chr1 24451377 24451488 -218212865 + MIR SINE MIR 92 203 -59 749 168 0 0 chr1 24451567 24451722 -218212631 - AluJb SINE Alu 0 311 157 216 281 0 0 chr1 24451796 24451853 -218212500 - MIR SINE MIR -1 261 205 201 224 20 0 chr1 24452035 24452084 -218212269 + MIR SINE MIR 118 167 -95 1482 169 37 44 chr1 24452525 24452821 -218211532 - AluJo SINE Alu -18 294 1 1944 115 16 48 chr1 24452827 24453000 -218211353 - AluSc SINE Alu -5 304 144 2177 97 0 7 chr1 24453000 24453300 -218211053 - AluY SINE Alu -13 298 1 1944 115 16 48 chr1 24453300 24453440 -218210913 - AluSc SINE Alu -165 144 1 539 160 10 40 chr1 24453446 24453546 -218210807 - FLAM_A SINE Alu -14 128 32 266 355 47 0 chr1 24453564 24453671 -218210682 - MIR3 SINE MIR -54 154 43 531 291 95 0 chr1 24453728 24453886 -218210467 - MIR SINE MIR -70 192 20 712 295 45 0 chr1 24454796 24455020 -218209333 + MIR SINE MIR 3 236 -26 353 246 76 17 chr1 24455031 24455149 -218209204 + MIR SINE MIR 63 187 -75 1826 167 0 3 chr1 24455189 24455489 -218208864 - AluJo SINE Alu -13 299 1 855 172 0 8 chr1 24455609 24455743 -218208610 + FLAM_C SINE Alu 1 133 0 953 51 17 0 chr1 24456018 24456135 -218208218 + AluSq/x SINE Alu 13 131 -181 2084 101 10 7 chr1 24456137 24456434 -218207919 + AluSx SINE Alu 1 298 -14 738 125 58 8 chr1 24456614 24456734 -218207619 + AluJb SINE Alu 6 131 -181 2369 66 3 0 chr1 24456736 24457040 -218207313 + AluY SINE Alu 1 305 -6 2051 113 0 56 chr1 24457196 24457516 -218206837 + AluSx SINE Alu 1 302 -10 2163 72 0 30 chr1 24457521 24457825 -218206528 + AluY SINE Alu 1 295 -16 2386 42 0 7 chr1 24457867 24458155 -218206198 - AluY SINE Alu -11 300 15 2128 123 3 3 chr1 24458460 24458769 -218205584 + AluSx SINE Alu 1 309 -3 2068 43 0 8 chr1 24458947 24459205 -218205148 + AluY SINE Alu 54 309 -2 198 182 68 0 chr1 24459667 24459711 -218204642 - MIR SINE MIR -93 115 69 2143 106 0 23 chr1 24459782 24460085 -218204268 - AluSx SINE Alu -16 296 1 2114 103 10 0 chr1 24460085 24460376 -218203977 - AluSx SINE Alu -18 294 1 3389 119 15 96 chr1 24460376 24460417 -218203936 - L1MB7 LINE L1 -209 5975 5932 2224 91 0 0 chr1 24460417 24460704 -218203649 + AluSx SINE Alu 21 307 -5 3389 119 15 96 chr1 24460704 24460840 -218203513 - L1MB7 LINE L1 -252 5932 5787 769 168 8 8 chr1 24460840 24460971 -218203382 + AluJo/FLAM SINE Alu 1 131 -171 2141 93 3 20 chr1 24460971 24461271 -218203082 + AluSx SINE Alu 1 295 -17 3389 119 15 96 chr1 24461271 24461323 -218203030 - L1MB7 LINE L1 -396 5788 5733 1649 156 58 7 chr1 24461323 24461598 -218202755 - AluJb SINE Alu -21 291 3 3389 119 15 96 chr1 24461598 24462027 -218202326 - L1MB7 LINE L1 -451 5733 5374 2112 110 0 7 chr1 24462027 24462327 -218202026 - AluSq SINE Alu -15 298 1 3389 119 15 96 chr1 24462327 24462384 -218201969 - L1MB7 LINE L1 -810 5374 5314 261 0 0 0 chr1 24462394 24462423 -218201930 + (CA)n Simple_repeat Simple_repeat 2 30 0 290 292 88 0 chr1 24462456 24462569 -218201784 - MIR SINE MIR -83 179 57 2088 137 0 0 chr1 24462586 24462893 -218201460 - AluSx SINE Alu 0 312 6 2412 44 17 0 chr1 24462897 24463195 -218201158 - AluY SINE Alu -8 303 1 208 269 0 0 chr1 24463207 24463259 -218201094 - L2 LINE L2 -1 3312 3261 229 183 50 17 chr1 24463365 24463425 -218200928 - L1ME4a LINE L1 0 6121 6060 213 238 250 0 chr1 24463706 24463790 -218200563 + MIR SINE MIR 71 175 -87 382 340 131 11 chr1 24463925 24464116 -218200237 + MIR SINE MIR 48 261 -1 200 322 56 0 chr1 24464117 24464207 -218200146 - L2 LINE L2 -19 3294 3200 607 299 51 8 chr1 24464278 24464512 -218199841 - MIR SINE MIR -6 256 13 420 20 0 0 chr1 24464684 24464733 -218199620 + (TG)n Simple_repeat Simple_repeat 2 50 0 2056 102 0 31 chr1 24464733 24465026 -218199327 - AluSx SINE Alu -28 284 1 1846 147 7 3 chr1 24465028 24465321 -218199032 - AluJb SINE Alu -18 294 1 647 338 26 4 chr1 24465386 24465617 -218198736 - MIR SINE MIR -5 257 22 498 264 78 0 chr1 24465825 24465954 -218198399 + MIR SINE MIR 123 261 -1 328 289 17 43 chr1 24466003 24466134 -218198219 - MIR SINE MIR -62 146 35 266 208 0 0 chr1 24466394 24466447 -218197906 - L2 LINE L2 -217 3055 3003 1771 113 62 0 chr1 24466518 24466793 -218197560 + AluSx SINE Alu 1 292 -20 529 293 77 49 chr1 24466804 24467050 -218197303 - MIR SINE MIR 0 262 10 541 292 60 43 chr1 24467472 24467705 -218196648 + MIR SINE MIR 20 256 -6 210 71 0 0 chr1 24468230 24468258 -218196095 + (A)n Simple_repeat Simple_repeat 1 28 0 229 253 103 35 chr1 24469163 24469250 -218195103 + MIR3 SINE MIR 10 102 -106 195 258 11 65 chr1 24469284 24469377 -218194976 - L2 LINE L2 -1 3271 3184 333 230 30 10 chr1 24469752 24469852 -218194501 + MIR SINE MIR 42 143 -65 218 268 0 0 chr1 24470204 24470260 -218194093 - MIR SINE MIR -111 151 96 276 262 90 16 chr1 24470299 24470421 -218193932 - MIR SINE MIR -96 166 36 903 74 8 8 chr1 24470432 24470554 -218193799 - AluJo SINE Alu -178 134 13 316 295 205 13 chr1 24470822 24470978 -218193375 - MIR SINE MIR -14 248 63 271 235 12 37 chr1 24471221 24471302 -218193051 - MIR SINE MIR -110 98 20 1642 93 110 0 chr1 24471399 24471635 -218192718 - AluSq SINE Alu -51 262 1 243 364 20 0 chr1 24471730 24471829 -218192524 - MIR SINE MIR -127 135 35 298 262 28 47 chr1 24471888 24471995 -218192358 + MIR3 SINE MIR 82 186 -22 308 255 255 7 chr1 24472265 24472418 -218191935 - MIR SINE MIR -50 212 22 270 0 0 0 chr1 24472615 24472645 -218191708 + (TG)n Simple_repeat Simple_repeat 1 30 0 324 324 88 7 chr1 24472751 24472899 -218191454 + MIR SINE MIR 25 184 -78 202 234 43 0 chr1 24473131 24473178 -218191175 + MIR SINE MIR 109 157 -105 365 266 51 46 chr1 24473940 24474134 -218190219 - MIR SINE MIR -62 146 3 300 268 45 27 chr1 24475245 24475357 -218188996 - MIR SINE MIR -90 172 59 1844 149 3 0 chr1 24475383 24475705 -218188648 - AluSx SINE Alu 0 312 1 2159 90 7 17 chr1 24476040 24476341 -218188012 + AluSx SINE Alu 1 298 -14 291 192 192 13 chr1 24476496 24476574 -218187779 + MER117 DNA MER1_type 1 92 -105 187 246 49 49 chr1 24476614 24476675 -218187678 + MIR SINE MIR 45 105 -103 1007 194 43 0 chr1 24476923 24477134 -218187219 + MIR SINE MIR 2 221 -41 339 283 88 0 chr1 24477191 24477304 -218187049 + MIR3 SINE MIR 32 154 -54 1749 179 3 0 chr1 24478734 24479035 -218185318 - AluJo SINE Alu -10 302 1 2168 95 9 49 chr1 24479223 24479400 -218184953 - AluSq SINE Alu 0 313 153 2192 110 0 0 chr1 24479400 24479701 -218184652 - AluSq SINE Alu -12 301 1 2168 95 9 49 chr1 24479701 24479849 -218184504 - AluSq SINE Alu -160 153 1 387 276 8 16 chr1 24479849 24479976 -218184377 - L1ME LINE L1 -421 5700 5575 635 307 66 89 chr1 24480770 24480988 -218183365 + L2 LINE L2 2720 2941 -331 2047 108 0 17 chr1 24480988 24481311 -218183042 - AluSg SINE Alu 0 318 1 1752 168 0 3 chr1 24481318 24481609 -218182744 - AluJb SINE Alu -22 290 1 635 307 66 89 chr1 24481609 24481946 -218182407 + L2 LINE L2 2947 3271 -1 1363 254 99 61 chr1 24482261 24482817 -218181536 - MLT1K LTR MaLR -10 578 2 684 160 14 35 chr1 24483361 24483505 -218180848 + MIR SINE MIR 46 186 -76 1772 146 3 17 chr1 24483507 24483809 -218180544 + AluJb SINE Alu 13 310 -2 910 150 0 0 chr1 24483811 24483944 -218180409 + FLAM_C SINE Alu 1 133 0 395 274 18 9 chr1 24483962 24484075 -218180278 - MIR SINE MIR -78 130 17 848 199 107 20 chr1 24484476 24484641 -218179712 + MER58C DNA MER1_type 1 187 -2233 1957 97 10 31 chr1 24484641 24484931 -218179422 - AluSx SINE Alu -8 304 21 848 199 107 20 chr1 24484931 24484961 -218179392 + MER58C DNA MER1_type 187 213 -2 574 248 15 0 chr1 24484963 24485100 -218179253 - MIR3 SINE MIR -50 158 20 2309 97 0 0 chr1 24485357 24485655 -218178698 - AluSx SINE Alu -14 298 1 205 245 0 0 chr1 24485677 24485726 -218178627 - MIR SINE MIR -67 141 93 370 80 0 0 chr1 24485830 24485880 -218178473 - AluSc SINE Alu -64 235 186 453 19 0 0 chr1 24485880 24485934 -218178419 + (CA)n Simple_repeat Simple_repeat 1 54 0 377 255 156 14 chr1 24486011 24486152 -218178201 + MIR3 SINE MIR 38 198 -10 325 326 30 21 chr1 24486162 24486331 -218178022 + MIR SINE MIR 14 146 -62 22 0 0 0 chr1 24486356 24486378 -218177975 + AT_rich Low_complexity Low_complexity 1 22 0 1897 146 3 0 chr1 24486385 24486680 -218177673 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 24487028 24487050 -218177303 + AT_rich Low_complexity Low_complexity 1 22 0 251 303 45 0 chr1 24487053 24487142 -218177211 + MIR SINE MIR 100 192 -70 2028 113 0 3 chr1 24487256 24487581 -218176772 - AluSq SINE Alu 0 324 1 289 339 9 0 chr1 24487586 24487695 -218176658 - MIR SINE MIR -51 211 102 27 0 0 0 chr1 24487715 24487742 -218176611 + AT_rich Low_complexity Low_complexity 1 27 0 1774 144 27 27 chr1 24487961 24488259 -218176094 + AluJb SINE Alu 1 298 -14 700 240 97 19 chr1 24488266 24488524 -218175829 - L2 LINE L2 -1321 1993 1716 1830 131 61 3 chr1 24488554 24488882 -218175471 - L1MB3 LINE L1 -23 6160 5814 1998 109 39 0 chr1 24488882 24489167 -218175186 + AluSx SINE Alu 1 296 -16 2197 113 7 0 chr1 24491951 24492261 -218172092 - AluSx SINE Alu 0 312 1 671 196 25 106 chr1 24493359 24493453 -218170900 + MER5A DNA MER1_type 1 101 -88 1509 113 35 9 chr1 24493453 24493684 -218170669 + AluSx SINE Alu 55 291 -21 1993 121 3 7 chr1 24493684 24493981 -218170372 + AluY SINE Alu 1 296 -15 671 196 25 106 chr1 24493981 24494084 -218170269 + MER5A DNA MER1_type 99 183 -6 307 28 0 0 chr1 24494116 24494152 -218170201 - U2 snRNA snRNA -152 36 1 421 314 26 47 chr1 24494154 24494489 -218169864 + L2 LINE L2 2686 3023 -249 9498 23 1 209 chr1 24494510 24496260 -218168093 - SVA Other Other 0 1386 1 23 0 0 0 chr1 24496414 24496437 -218167916 + AT_rich Low_complexity Low_complexity 1 23 0 1825 175 41 78 chr1 24496574 24497090 -218167263 + L1MB7 LINE L1 5446 5966 -218 1710 181 10 3 chr1 24497090 24497400 -218166953 + AluJo SINE Alu 1 312 0 1920 70 0 0 chr1 24497407 24497648 -218166705 + AluSx SINE Alu 63 303 -9 1065 166 0 81 chr1 24497648 24497788 -218166565 + L1MB8 LINE L1 4949 5099 -1047 1666 140 7 14 chr1 24497788 24498066 -218166287 - AluJo SINE Alu -1 311 36 1065 166 0 81 chr1 24498066 24498149 -218166204 + L1MB8 LINE L1 5099 5147 -999 2111 91 38 0 chr1 24498149 24498436 -218165917 - AluSc SINE Alu -11 298 1 1065 166 0 81 chr1 24498436 24498495 -218165858 + L1MB8 LINE L1 5147 5209 -937 815 176 0 14 chr1 24498495 24498637 -218165716 - AluJo SINE Alu -172 140 1 538 182 143 26 chr1 24498637 24498791 -218165562 + L1MB8 LINE L1 5908 6079 -99 410 246 203 40 chr1 24498810 24499086 -218165267 + L1M4 LINE L1 3845 4165 -1981 190 273 0 0 chr1 24499146 24499190 -218165163 - L2 LINE L2 -3 3310 3267 2491 65 0 56 chr1 24499302 24499625 -218164728 - AluY SINE Alu -6 305 1 2249 129 0 0 chr1 24499902 24500212 -218164141 - AluSx SINE Alu -2 310 1 196 250 36 0 chr1 24500213 24500269 -218164084 - L2 LINE L2 -13 3300 3243 791 164 22 87 chr1 24500382 24500506 -218163847 - MER5A DNA MER1_type -2 187 77 2517 93 3 0 chr1 24500506 24500818 -218163535 + AluSp SINE Alu 1 313 0 791 164 22 87 chr1 24500818 24500876 -218163477 - MER5A DNA MER1_type -112 77 17 219 231 0 19 chr1 24500926 24500978 -218163375 - L2 LINE L2 -75 3197 3147 1861 157 31 3 chr1 24501047 24501341 -218163012 + AluJb SINE Alu 1 302 -10 388 38 0 0 chr1 24501377 24501430 -218162923 - MADE1 DNA Mariner 0 80 28 598 224 109 12 chr1 24501434 24501599 -218162754 - MIR SINE MIR -79 183 3 1495 113 5 5 chr1 24501837 24502040 -218162313 + AluJb SINE Alu 1 203 -109 306 291 182 0 chr1 24502320 24502430 -218161923 - MIR SINE MIR -60 202 73 243 111 0 0 chr1 24502442 24502478 -218161875 - MER96 DNA MER1_type? -139 36 1 2412 97 3 0 chr1 24502906 24503215 -218161138 - AluSg SINE Alu 0 310 1 2027 150 0 3 chr1 24503217 24503517 -218160836 - AluJo SINE Alu 0 312 14 2070 105 31 14 chr1 24503797 24504083 -218160270 - AluSx SINE Alu -21 291 1 347 315 99 0 chr1 24504214 24504395 -218159958 - MIR SINE MIR -26 236 38 976 161 0 60 chr1 24504424 24504498 -218159855 + MER5A DNA MER1_type 3 80 -109 2319 99 0 10 chr1 24504498 24504801 -218159552 + AluSx SINE Alu 1 300 -12 976 161 0 60 chr1 24504801 24504925 -218159428 + MER5A DNA MER1_type 80 189 0 234 333 67 15 chr1 24505035 24505170 -218159183 - L2 LINE L2 -188 3084 2943 2615 49 0 7 chr1 24505295 24505600 -218158753 - AluY SINE Alu -8 303 1 2197 92 0 55 chr1 24505673 24506000 -218158353 - AluSg1 SINE Alu 0 309 1 623 169 17 102 chr1 24506028 24506205 -218158148 + MLT1D LTR MaLR 5 166 -339 2036 142 0 10 chr1 24506212 24506500 -218157853 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr1 24506502 24506540 -218157813 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1950 150 28 3 chr1 24506544 24506831 -218157522 - AluJb SINE Alu -18 294 1 3059 225 88 51 chr1 24506839 24507219 -218157134 - L2 LINE L2 -245 3068 2704 2111 140 19 7 chr1 24507219 24507527 -218156826 + AluSx SINE Alu 1 312 0 3059 225 88 51 chr1 24507527 24507760 -218156593 - L2 LINE L2 -609 2704 2481 2426 100 0 3 chr1 24507760 24508071 -218156282 + AluSg SINE Alu 1 310 0 3059 225 88 51 chr1 24508071 24508665 -218155688 - L2 LINE L2 -832 2481 1819 692 173 120 0 chr1 24508665 24508798 -218155555 + AluJb SINE Alu 137 285 -27 907 176 0 55 chr1 24508799 24508964 -218155389 - AluJo SINE Alu -66 246 91 3509 118 95 2 chr1 24509149 24509727 -218154626 + MER41B LTR ERV1 3 634 -1 461 291 63 54 chr1 24510067 24510078 -218154275 + MIR SINE MIR 19 28 -234 1700 166 9 69 chr1 24510078 24510220 -218154133 + AluJb SINE Alu 1 150 -162 2329 67 0 14 chr1 24510220 24510527 -218153826 + AluY SINE Alu 4 306 0 1700 166 9 69 chr1 24510527 24510715 -218153638 + AluJb SINE Alu 150 312 0 461 291 63 54 chr1 24510715 24510920 -218153433 + MIR SINE MIR 28 233 -29 198 0 0 0 chr1 24510920 24510942 -218153411 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 478 287 242 29 chr1 24511044 24511671 -218152682 - L2 LINE L2 -219 3053 2231 1125 133 21 11 chr1 24511672 24511860 -218152493 + MLT1D LTR MaLR 1 190 -315 1456 150 0 121 chr1 24511862 24512169 -218152184 + AluJb SINE Alu 33 302 -10 1043 152 47 6 chr1 24512180 24512351 -218152002 + AluJb SINE Alu 132 309 -3 2318 86 30 0 chr1 24512356 24512658 -218151695 + AluSp SINE Alu 1 311 -2 1015 214 87 29 chr1 24512675 24512916 -218151437 + MLT1D LTR MaLR 176 464 -41 1579 69 0 5 chr1 24512916 24513104 -218151249 + AluSx SINE Alu 1 187 -125 1015 214 87 29 chr1 24513104 24513149 -218151204 + MLT1D LTR MaLR 464 505 0 318 315 67 25 chr1 24513169 24513407 -218150946 - L2 LINE L2 -1114 2200 1953 632 202 0 0 chr1 24513407 24513526 -218150827 + FRAM SINE Alu 49 167 -9 2028 155 20 0 chr1 24513639 24513942 -218150411 - AluJb SINE Alu 0 312 4 302 250 90 0 chr1 24513947 24514047 -218150306 - L1ME4a LINE L1 0 6121 6013 189 0 0 0 chr1 24514117 24514138 -218150215 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 255 306 169 31 chr1 24514155 24514315 -218150038 - MIR SINE MIR -78 184 3 371 270 36 0 chr1 24514520 24514631 -218149722 - MIR SINE MIR -79 183 69 257 276 9 38 chr1 24514726 24514831 -218149522 + (CGGGG)n Simple_repeat Simple_repeat 1 102 0 313 261 13 26 chr1 24515040 24515193 -218149160 + G-rich Low_complexity Low_complexity 2 152 0 21 95 0 0 chr1 24515226 24515289 -218149064 + GC_rich Low_complexity Low_complexity 1 63 0 252 233 120 80 chr1 24516477 24516520 -218147833 + MIR SINE MIR 5 45 -217 2587 49 3 13 chr1 24516520 24516828 -218147525 - AluY SINE Alu -6 305 1 252 233 120 80 chr1 24516828 24516934 -218147419 + MIR SINE MIR 45 160 -102 2049 144 0 0 chr1 24516965 24517250 -218147103 - AluSx SINE Alu -21 291 7 528 256 42 42 chr1 24518276 24518467 -218145886 - MIR3 SINE MIR -2 206 16 1906 145 48 3 chr1 24519313 24519603 -218144750 - AluJb SINE Alu -9 303 1 2377 102 0 6 chr1 24520704 24521017 -218143336 - AluY SINE Alu 0 311 1 2401 93 0 0 chr1 24521021 24521312 -218143041 - AluSq SINE Alu -21 292 2 349 290 22 43 chr1 24521481 24521619 -218142734 - L2 LINE L2 -25 3288 3154 832 213 6 0 chr1 24521619 24521783 -218142570 + FRAM SINE Alu 1 165 -1 228 308 11 22 chr1 24521879 24521970 -218142383 + L2 LINE L2 2170 2259 -1055 1049 76 0 0 chr1 24522094 24522225 -218142128 - AluSg/x SINE Alu -5 307 177 1838 111 0 0 chr1 24522225 24522459 -218141894 + AluSx SINE Alu 47 280 -32 195 358 147 0 chr1 24522496 24522605 -218141748 + L2 LINE L2 3148 3272 0 1127 295 139 23 chr1 24522660 24523118 -218141235 - L2 LINE L2 -344 2970 2567 2308 118 0 6 chr1 24523118 24523432 -218140921 - AluSx SINE Alu 0 312 1 1127 295 139 23 chr1 24523432 24523516 -218140837 - L2 LINE L2 -747 2567 2494 1571 185 72 14 chr1 24523516 24523808 -218140545 - AluJo SINE Alu -3 309 1 1127 295 139 23 chr1 24523808 24523953 -218140400 - L2 LINE L2 -820 2494 2202 593 239 168 63 chr1 24524008 24524478 -218139875 - LTR67 LTR ERVL -1 556 6 913 260 63 48 chr1 24524594 24524613 -218139740 - L2 LINE L2 -1099 2215 2198 2332 93 7 3 chr1 24524613 24524923 -218139430 + AluSx SINE Alu 1 311 -1 913 260 63 48 chr1 24524923 24525238 -218139115 - L2 LINE L2 -1116 2198 1876 2159 92 46 0 chr1 24525240 24525521 -218138832 + AluSx SINE Alu 13 306 -6 364 259 65 41 chr1 24526152 24526322 -218138031 + MER5B DNA MER1_type 5 178 0 561 239 112 43 chr1 24526498 24526727 -218137626 + MIR SINE MIR 9 252 -10 675 167 7 43 chr1 24527022 24527160 -218137193 + FLAM_C SINE Alu 1 133 0 204 265 0 0 chr1 24527181 24527230 -218137123 + MER5B DNA MER1_type 2 50 -128 1647 167 48 0 chr1 24527243 24527554 -218136799 - L1MB7 LINE L1 -17 6167 5842 190 205 0 0 chr1 24527598 24527637 -218136716 - MIR SINE MIR -36 226 188 450 291 42 18 chr1 24527761 24527926 -218136427 - MIR SINE MIR -88 174 6 617 336 90 32 chr1 24527977 24528355 -218135998 - L2 LINE L2 0 3272 2873 443 272 58 0 chr1 24528849 24529022 -218135331 - MIR3 SINE MIR 0 208 26 376 273 78 45 chr1 24529282 24529436 -218134917 - MIR3 SINE MIR -27 181 23 572 272 150 5 chr1 24529616 24529829 -218134524 + MIR SINE MIR 7 250 -12 204 318 0 0 chr1 24530041 24530107 -218134246 + L2 LINE L2 2716 2781 -533 298 116 0 0 chr1 24530110 24530153 -218134200 + MIR SINE MIR 15 57 -205 2032 141 3 7 chr1 24530154 24530473 -218133880 - AluJo SINE Alu 0 312 1 2167 113 10 13 chr1 24530604 24530905 -218133448 - AluSg1 SINE Alu -9 300 1 331 314 39 20 chr1 24531302 24531455 -218132898 + MIR SINE MIR 35 190 -72 2399 88 0 10 chr1 24531514 24531821 -218132532 - AluSg1 SINE Alu 0 309 6 281 279 58 0 chr1 24531862 24531948 -218132405 + MIR3 SINE MIR 84 174 -34 287 306 52 8 chr1 24531988 24532122 -218132231 + MER117 DNA MER1_type 1 140 -57 1120 105 0 49 chr1 24532124 24532322 -218132031 + AluY SINE Alu 131 320 0 2140 100 18 4 chr1 24532332 24532633 -218131720 + AluSx SINE Alu 1 305 0 493 328 150 21 chr1 24533148 24533435 -218130918 - L3 LINE CR1 -1 1576 1253 2221 120 6 19 chr1 24533694 24534010 -218130343 + AluSx SINE Alu 1 312 0 275 236 106 62 chr1 24534014 24534175 -218130178 + MIR SINE MIR 62 229 -33 633 309 122 0 chr1 24534337 24534567 -218129786 - MIR SINE MIR -3 259 2 965 140 105 0 chr1 24534588 24534759 -218129594 - MER5A DNA MER1_type 0 189 1 1300 200 0 99 chr1 24534806 24535009 -218129344 - AluY SINE Alu 0 311 154 2221 119 0 0 chr1 24535009 24535302 -218129051 + AluSx SINE Alu 1 293 -19 1300 200 0 99 chr1 24535302 24535443 -218128910 - AluY SINE Alu -157 154 1 2321 81 7 0 chr1 24535618 24535903 -218128450 + AluSg SINE Alu 21 307 -3 290 267 133 9 chr1 24536285 24536390 -218127963 + L2 LINE L2 3155 3272 0 2036 95 46 7 chr1 24536720 24537005 -218127348 - AluSc SINE Alu -13 296 1 2711 39 0 3 chr1 24537172 24537478 -218126875 + AluY SINE Alu 1 305 -6 1366 209 56 133 chr1 24537513 24537795 -218126558 - MLT1J LTR MaLR -2 509 207 1821 140 32 36 chr1 24537795 24538103 -218126250 - AluJo SINE Alu -1 311 5 1366 209 56 133 chr1 24538103 24538129 -218126224 - MLT1J LTR MaLR -304 207 181 4792 101 54 67 chr1 24538129 24538958 -218125395 - L1MC1 LINE L1 -5 6328 5510 2406 102 0 6 chr1 24538958 24539271 -218125082 - AluSx SINE Alu -1 311 1 4792 101 54 67 chr1 24539271 24539335 -218125018 - L1MC1 LINE L1 -823 5510 5447 1366 209 56 133 chr1 24539335 24539360 -218124993 - MLT1J LTR MaLR -330 181 156 403 173 0 12 chr1 24539360 24539441 -218124912 - L1MA10 LINE L1 -1 6333 6254 1366 209 56 133 chr1 24539441 24539656 -218124697 - MLT1J LTR MaLR -355 156 1 243 204 0 20 chr1 24540202 24540251 -218124102 - L2 LINE L2 -2 3270 3223 2274 104 3 3 chr1 24540303 24540601 -218123752 - AluSx SINE Alu -8 304 7 1653 164 87 3 chr1 24540868 24541155 -218123198 - AluJb SINE Alu -1 311 1 846 140 0 22 chr1 24541161 24541297 -218123056 - FLAM_C SINE Alu 0 133 1 424 282 30 90 chr1 24541529 24541685 -218122668 - MIR SINE MIR -12 250 111 2160 105 18 3 chr1 24541685 24541970 -218122383 + AluSq SINE Alu 3 291 -22 424 282 30 90 chr1 24541970 24542047 -218122306 - MIR SINE MIR -151 111 31 200 307 13 0 chr1 24542302 24542377 -218121976 + MIR SINE MIR 62 137 -71 487 278 61 28 chr1 24542830 24543010 -218121343 - MIR SINE MIR -39 223 38 216 271 0 0 chr1 24543952 24544000 -218120353 + (CCA)n Simple_repeat Simple_repeat 2 49 0 629 249 112 5 chr1 24544201 24544398 -218119955 - MIR SINE MIR -21 241 24 596 267 181 0 chr1 24544533 24544754 -218119599 + MIR SINE MIR 2 262 0 257 26 26 0 chr1 24544757 24544795 -218119558 + MADE1 DNA Mariner 42 80 0 1559 201 10 10 chr1 24544878 24545011 -218119342 + AluJb SINE Alu 1 133 -179 2359 94 7 3 chr1 24545011 24545310 -218119043 + AluSx SINE Alu 2 301 -11 1559 201 10 10 chr1 24545310 24545469 -218118884 + AluJb SINE Alu 132 293 -19 277 280 119 8 chr1 24545528 24545646 -218118707 - L2 LINE L2 -5 3267 3137 193 309 0 0 chr1 24545776 24545831 -218118522 - L2 LINE L2 -213 3059 3005 491 165 17 43 chr1 24545843 24545958 -218118395 - MLT1K LTR MaLR -8 580 469 466 266 26 43 chr1 24547008 24547190 -218117163 - MIR SINE MIR -62 146 18 218 250 36 0 chr1 24547474 24547530 -218116823 + MIR SINE MIR 80 137 -125 428 213 88 52 chr1 24548323 24548459 -218115894 - MIR SINE MIR -72 190 50 285 286 103 6 chr1 24549031 24549206 -218115147 - L1ME4a LINE L1 -182 5939 5748 254 303 67 11 chr1 24549728 24549817 -218114536 - MIR SINE MIR -98 110 17 294 275 88 11 chr1 24550150 24550241 -218114112 + MIR SINE MIR 120 217 -45 212 119 24 24 chr1 24550241 24550283 -218114070 - L2 LINE L2 -5 3308 3267 511 220 150 6 chr1 24550550 24550723 -218113630 + MIR SINE MIR 29 226 -36 794 153 107 149 chr1 24550744 24551025 -218113328 + AluSg1 SINE Alu 21 289 -20 264 297 62 8 chr1 24551042 24551170 -218113183 - MIR SINE MIR 0 262 128 212 227 61 30 chr1 24551843 24551909 -218112444 - MIR SINE MIR -1 261 194 1964 168 63 113 chr1 24551935 24552290 -218112063 - MER44D DNA MER2_type -1882 605 223 2138 117 12 24 chr1 24552290 24552631 -218111722 + MER1B DNA MER1_type 1 337 0 1964 168 63 113 chr1 24552631 24552751 -218111602 - MER44D DNA MER2_type -2264 223 99 2128 123 6 19 chr1 24552751 24553067 -218111286 + AluSx SINE Alu 1 312 0 241 194 153 20 chr1 24553071 24553169 -218111184 + MIR SINE MIR 62 172 -90 609 291 116 0 chr1 24553425 24553624 -218110729 - MIR SINE MIR -39 223 2 1013 140 105 0 chr1 24553645 24553816 -218110537 - MER5A DNA MER1_type 0 189 1 1246 200 0 99 chr1 24553863 24554066 -218110287 - AluY SINE Alu 0 311 154 2195 119 0 0 chr1 24554066 24554359 -218109994 + AluSx SINE Alu 1 293 -19 1246 200 0 99 chr1 24554359 24554500 -218109853 - AluY SINE Alu -157 154 1 1112 158 8 0 chr1 24554667 24557709 -218106644 - ALR/Alpha Satellite centromeric 0 3065 1 1164 156 8 1 chr1 24557725 24571696 -218092657 - ALR/Alpha Satellite centromeric 0 14079 1 1563 110 4 13 chr1 24571696 24571924 -218092429 + AluSg/x SINE Alu 80 305 -4 1415 205 51 63 chr1 24571924 24572254 -218092099 - MLT1D LTR MaLR -95 410 78 504 81 0 92 chr1 24572254 24572341 -218092012 + MADE1 DNA Mariner 2 80 0 1415 205 51 63 chr1 24572341 24572383 -218091970 - MLT1D LTR MaLR -427 78 41 2014 88 80 0 chr1 24572383 24572657 -218091696 + AluSx SINE Alu 1 296 -16 1415 205 51 63 chr1 24572657 24572698 -218091655 - MLT1D LTR MaLR -464 41 1 2273 136 26 38 chr1 24572703 24572746 -218091607 + LTR37A LTR ERV1 3 45 -381 1300 192 72 48 chr1 24572746 24572890 -218091463 + MER58B DNA MER1_type 1 140 -2280 2501 59 0 16 chr1 24572890 24573194 -218091159 + AluY SINE Alu 1 299 -12 1300 192 72 48 chr1 24573194 24573382 -218090971 + MER58B DNA MER1_type 140 341 0 2273 136 26 38 chr1 24573382 24573683 -218090670 + LTR37A LTR ERV1 45 344 -82 1997 96 82 14 chr1 24573683 24573974 -218090379 + AluSq SINE Alu 1 311 -2 2273 136 26 38 chr1 24573974 24574055 -218090298 + LTR37A LTR ERV1 344 424 -2 35 24 0 0 chr1 24574316 24574358 -218089995 + AT_rich Low_complexity Low_complexity 1 42 0 1716 167 0 29 chr1 24574367 24574678 -218089675 + AluJo SINE Alu 1 302 -10 207 288 321 0 chr1 24574687 24574871 -218089482 + MIR SINE MIR 20 262 0 192 233 0 0 chr1 24574975 24575018 -218089335 - MIR SINE MIR -70 192 150 1994 140 3 13 chr1 24575038 24575352 -218089001 + AluJb SINE Alu 1 311 -1 547 346 77 3 chr1 24575367 24575653 -218088700 + L3 LINE CR1 1261 1567 -10 526 195 55 39 chr1 24575943 24576071 -218088282 + MER69A DNA AcHobo 47 176 -1 2324 70 23 13 chr1 24576235 24576534 -218087819 + AluY SINE Alu 1 302 -9 761 148 0 8 chr1 24576537 24576659 -218087694 + AluJb SINE Alu 170 290 -22 829 127 0 0 chr1 24576661 24576771 -218087582 + AluSq/x SINE Alu 1 110 -203 277 135 0 0 chr1 24576784 24576821 -218087532 - 7SLRNA srpRNA srpRNA -220 100 64 2152 121 3 3 chr1 24576991 24577281 -218087072 + AluSx SINE Alu 1 290 -22 1569 168 44 37 chr1 24577738 24577860 -218086493 + AluJo SINE Alu 1 121 -191 243 0 0 0 chr1 24577860 24577887 -218086466 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1529 121 0 5 chr1 24577888 24578103 -218086250 - AluSg/x SINE Alu -13 299 86 1569 168 44 37 chr1 24578103 24578275 -218086078 + AluJo SINE Alu 120 299 -13 216 0 0 0 chr1 24578309 24578333 -218086020 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 275 189 0 0 chr1 24579040 24579093 -218085260 - MER20 DNA MER1_type 0 219 167 597 251 17 46 chr1 24579117 24579292 -218085061 + MER69A DNA AcHobo 1 170 -7 1305 178 111 19 chr1 24579353 24579519 -218084834 - AluJo SINE Alu -17 295 93 1986 78 7 26 chr1 24579519 24579788 -218084565 - AluSc SINE Alu -10 299 36 1305 178 111 19 chr1 24579788 24579891 -218084462 - AluJo SINE Alu -219 93 1 2342 81 0 16 chr1 24579918 24580227 -218084126 - AluY SINE Alu -7 304 1 812 183 0 0 chr1 24580233 24580364 -218083989 - FLAM_C SINE Alu -12 131 1 358 279 27 18 chr1 24580369 24580480 -218083873 + MER103 DNA DNA 52 163 -3 2262 109 3 3 chr1 24580802 24581113 -218083240 + AluSq SINE Alu 1 311 -2 1866 149 3 17 chr1 24581286 24581582 -218082771 - AluJo SINE Alu -20 292 1 441 318 81 0 chr1 24581621 24581769 -218082584 + MIR SINE MIR 21 180 -82 1649 124 0 0 chr1 24581821 24582046 -218082307 + AluSg/x SINE Alu 69 293 -17 25 0 0 0 chr1 24585863 24585888 -218078465 + AT_rich Low_complexity Low_complexity 1 25 0 2211 125 0 0 chr1 24586265 24586568 -218077785 + AluSx SINE Alu 3 305 -7 1601 166 23 23 chr1 24586887 24587189 -218077164 - AluJb SINE Alu -10 302 1 424 91 0 0 chr1 24587284 24587339 -218077014 + AluY SINE Alu 133 187 -124 479 187 119 8 chr1 24588372 24588506 -218075847 + MIR SINE MIR 44 192 -70 445 300 69 64 chr1 24588555 24589119 -218075234 + L2 LINE L2 2597 3242 -30 2047 107 3 14 chr1 24589197 24589488 -218074865 - AluSx SINE Alu -24 288 1 1688 163 0 14 chr1 24589618 24589894 -218074459 - AluJo SINE Alu -39 273 2 566 297 169 52 chr1 24589973 24590000 -218074353 - L2 LINE L2 -6 3307 3285 2390 93 0 0 chr1 24590000 24590300 -218074053 + AluSx SINE Alu 2 301 -11 2196 122 0 6 chr1 24590300 24590611 -218073742 + AluSg SINE Alu 1 310 0 566 297 169 52 chr1 24590611 24591003 -218073350 - L2 LINE L2 -27 3286 2838 235 222 25 74 chr1 24591020 24591101 -218073252 - L2 LINE L2 -973 2341 2265 2268 80 10 23 chr1 24591130 24591432 -218072921 + AluSp SINE Alu 1 298 -15 1720 173 22 26 chr1 24591441 24591754 -218072599 + AluJb SINE Alu 1 312 0 2527 40 0 23 chr1 24592112 24592414 -218071939 - AluY SINE Alu -6 305 11 872 189 34 0 chr1 24592860 24593008 -218071345 - FRAM SINE Alu -23 153 1 808 174 0 34 chr1 24593027 24593176 -218071177 + AluJb SINE Alu 149 292 -20 1130 152 0 0 chr1 24593375 24593546 -218070807 - AluSx SINE Alu -141 171 1 1606 158 75 7 chr1 24593783 24594062 -218070291 - AluJb SINE Alu -14 298 1 226 320 157 20 chr1 24594147 24594344 -218070009 + MIR SINE MIR 31 254 -8 2248 104 3 16 chr1 24594482 24594790 -218069563 + AluSx SINE Alu 1 304 -8 1896 150 28 0 chr1 24595012 24595298 -218069055 - AluSx SINE Alu -6 306 13 978 140 0 0 chr1 24595298 24595434 -218068919 - AluJb SINE Alu -176 136 1 2089 123 0 45 chr1 24595593 24595902 -218068451 - AluSx SINE Alu -17 295 1 1879 151 0 3 chr1 24595992 24596323 -218068030 - AluJb SINE Alu 0 330 1 2364 104 0 0 chr1 24596323 24596621 -218067732 - AluSc SINE Alu -10 299 1 2394 97 3 0 chr1 24596643 24596951 -218067402 - AluSp SINE Alu -4 309 1 2181 111 7 14 chr1 24597167 24597464 -218066889 + AluSx SINE Alu 1 295 -17 1165 202 90 0 chr1 24597504 24597781 -218066572 + Charlie4a DNA MER1_type 17 318 -190 986 150 0 135 chr1 24597787 24598047 -218066306 + AluJb SINE Alu 85 309 -3 2645 44 0 0 chr1 24598051 24598349 -218066004 + AluY SINE Alu 1 298 -13 2369 70 3 25 chr1 24598351 24598667 -218065686 + AluY SINE Alu 1 309 -2 774 158 96 6 chr1 24598672 24598849 -218065504 + Charlie4a DNA MER1_type 310 502 -6 246 143 24 0 chr1 24598859 24598901 -218065452 + MER69A DNA AcHobo 2 44 -133 599 88 0 197 chr1 24598906 24599043 -218065310 + FLAM_C SINE Alu 20 129 -14 426 188 40 30 chr1 24599044 24599145 -218065208 + MER69A DNA AcHobo 33 134 -43 246 75 0 57 chr1 24599147 24599200 -218065153 + (TTTTC)n Simple_repeat Simple_repeat 5 54 0 2178 104 7 0 chr1 24599209 24599506 -218064847 - AluSq SINE Alu -14 299 1 2228 103 20 0 chr1 24599609 24599911 -218064442 - AluSq SINE Alu -5 308 1 322 208 240 10 chr1 24607273 24607369 -218056984 + L2 LINE L2 3192 3309 -4 2166 117 10 0 chr1 24607674 24607965 -218056388 - AluY SINE Alu -17 294 1 677 252 0 0 chr1 24608280 24608427 -218055926 + MIR SINE MIR 116 262 0 1194 89 0 95 chr1 24608551 24608741 -218055612 - AluSg/x SINE Alu -7 305 134 1506 75 0 35 chr1 24608741 24608942 -218055411 - AluY SINE Alu -1 310 117 2275 117 0 0 chr1 24609116 24609415 -218054938 + AluSx SINE Alu 1 299 -13 2161 126 10 0 chr1 24610119 24610429 -218053924 - AluSq SINE Alu 0 313 1 635 108 189 0 chr1 24610461 24610572 -218053781 - FLAM_C SINE Alu -10 133 2 221 119 24 0 chr1 24610717 24610759 -218053594 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 372 323 91 35 chr1 24611530 24611762 -218052591 + L1ME4a LINE L1 5875 6119 -2 364 279 5 100 chr1 24611793 24611865 -218052488 + L2 LINE L2 3094 3171 -142 2250 104 0 14 chr1 24611865 24612162 -218052191 - AluSx SINE Alu -19 293 1 364 279 5 100 chr1 24612162 24612279 -218052074 + L2 LINE L2 3171 3265 -48 296 230 70 30 chr1 24612345 24612445 -218051908 + LTR16C LTR ERVL 113 216 -275 2248 119 7 3 chr1 24612834 24613144 -218051209 + AluSx SINE Alu 1 311 -1 2284 119 0 3 chr1 24613461 24613772 -218050581 - AluSx SINE Alu -2 310 1 3746 71 80 5 chr1 24613862 24614414 -218049939 + LTR61 LTR ERV1 1 593 -2 23 0 0 0 chr1 24614562 24614585 -218049768 + AT_rich Low_complexity Low_complexity 1 23 0 1111 128 0 0 chr1 24614585 24614734 -218049619 + FRAM SINE Alu 18 166 -10 525 110 0 12 chr1 24614884 24614966 -218049387 + MER1B DNA MER1_type 1 81 -256 * 1277 122 5 5 chr1 24614955 24615144 -218049209 + MER1B DNA MER1_type 151 339 0 665 281 153 46 chr1 24615152 24615187 -218049166 + L2 LINE L2 2750 2780 -533 1997 168 3 0 chr1 24615187 24615497 -218048856 + AluSx SINE Alu 1 311 -1 665 281 153 46 chr1 24615497 24615974 -218048379 + L2 LINE L2 2780 3313 0 693 263 6 11 chr1 24616386 24616561 -218047792 + MIR SINE MIR 18 191 -71 499 264 68 0 chr1 24616626 24616774 -218047579 - MIR SINE MIR -13 249 92 263 364 36 32 chr1 24617399 24617619 -218046734 + L2 LINE L2 2892 3112 -160 827 260 23 72 chr1 24617723 24617805 -218046548 + Charlie8 DNA MER1_type 24 108 -2309 1871 129 31 28 chr1 24617805 24618092 -218046261 + AluJb SINE Alu 1 288 -24 827 260 23 72 chr1 24618092 24618274 -218046079 + Charlie8 DNA MER1_type 108 275 -2142 2328 95 0 3 chr1 24618444 24618738 -218045615 + AluSc SINE Alu 2 294 -15 372 220 40 104 chr1 24618996 24619203 -218045150 - MER20B DNA MER1_type -143 76 4 300 284 138 0 chr1 24619231 24619340 -218045013 - MER117 DNA MER1_type -43 154 31 1986 254 115 24 chr1 24619606 24619749 -218044604 + L2 LINE L2 2077 2206 -1107 1746 121 98 0 chr1 24619749 24620050 -218044303 - AluSx SINE Alu 0 326 1 1986 254 115 24 chr1 24620050 24620968 -218043385 + L2 LINE L2 2206 3311 -2 2457 96 0 3 chr1 24621050 24621390 -218042963 - AluSx SINE Alu 0 312 1 221 119 24 0 chr1 24621532 24621574 -218042779 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 372 323 91 35 chr1 24622345 24622577 -218041776 + L1ME4a LINE L1 5875 6119 -2 364 279 5 100 chr1 24622608 24622680 -218041673 + L2 LINE L2 3094 3171 -142 2250 104 0 14 chr1 24622680 24622977 -218041376 - AluSx SINE Alu -19 293 1 364 279 5 100 chr1 24622977 24623094 -218041259 + L2 LINE L2 3171 3265 -48 295 214 97 29 chr1 24623157 24623260 -218041093 + LTR16C LTR ERVL 107 216 -275 2283 120 7 0 chr1 24623649 24623958 -218040395 + AluSx SINE Alu 1 311 -1 2269 122 0 3 chr1 24624275 24624586 -218039767 - AluSx SINE Alu -2 310 1 3746 71 80 5 chr1 24624676 24625228 -218039125 + LTR61 LTR ERV1 1 593 -2 23 0 0 0 chr1 24625376 24625399 -218038954 + AT_rich Low_complexity Low_complexity 1 23 0 1130 121 0 0 chr1 24625399 24625548 -218038805 + FRAM SINE Alu 18 166 -10 2445 76 0 17 chr1 24625549 24625850 -218038503 + AluSp SINE Alu 1 296 -17 407 226 174 116 chr1 24626206 24626265 -218038088 + L1ME4a LINE L1 5902 5956 -165 1833 148 41 7 chr1 24626265 24626556 -218037797 - AluSx SINE Alu -11 301 1 2245 122 0 0 chr1 24626566 24626862 -218037491 - AluSx SINE Alu -16 296 1 407 226 174 116 chr1 24626862 24626981 -218037372 + L1ME4a LINE L1 5964 6102 -19 469 235 113 67 chr1 24627002 24627112 -218037241 + L1ME4a LINE L1 5873 5976 -145 266 87 22 0 chr1 24627112 24627158 -218037195 + (TA)n Simple_repeat Simple_repeat 1 47 0 469 235 113 67 chr1 24627158 24627200 -218037153 + L1ME4a LINE L1 5976 6015 -106 2101 112 3 21 chr1 24627200 24627518 -218036835 - AluSg SINE Alu 0 313 1 2021 128 4 4 chr1 24627525 24627829 -218036524 - AluSg SINE Alu 0 304 1 469 235 113 67 chr1 24627829 24627903 -218036450 + L1ME4a LINE L1 6020 6121 0 2393 98 3 0 chr1 24628144 24628451 -218035902 - AluSx SINE Alu -4 308 1 299 214 0 83 chr1 24628452 24628536 -218035817 - HAL1 LINE L1 -2426 81 5 350 263 83 0 chr1 24629029 24629123 -218035230 + L1ME4a LINE L1 5964 6074 -47 2540 87 3 0 chr1 24629123 24629434 -218034919 - AluSp SINE Alu -1 312 1 350 263 83 0 chr1 24629434 24629472 -218034881 + L1ME4a LINE L1 6074 6107 -14 2181 127 0 0 chr1 24629619 24629918 -218034435 - AluJb SINE Alu -11 301 3 207 265 20 0 chr1 24630451 24630500 -218033853 + CT-rich Low_complexity Low_complexity 3 52 0 234 189 19 0 chr1 24630622 24630675 -218033678 + (CA)n Simple_repeat Simple_repeat 1 54 0 263 272 68 48 chr1 24630923 24631026 -218033327 - L2 LINE L2 0 3272 3168 2332 100 0 0 chr1 24631451 24631740 -218032613 - AluSx SINE Alu -23 289 1 2236 124 3 0 chr1 24632689 24632988 -218031365 + AluSx SINE Alu 7 306 -6 1739 222 32 53 chr1 24632992 24633382 -218030971 - L1ME1 LINE L1 -5 6161 5783 2084 141 0 7 chr1 24633382 24633672 -218030681 - AluJb SINE Alu -24 288 1 1739 222 32 53 chr1 24633672 24633812 -218030541 - L1ME1 LINE L1 -383 5783 5642 761 215 58 92 chr1 24634268 24634529 -218029824 - MIR SINE MIR -10 252 1 1931 167 49 24 chr1 24634591 24635016 -218029337 + MER63B DNA MER1_type 1 436 0 257 254 32 75 chr1 24635888 24636044 -218028309 - MIR SINE MIR -60 148 3 213 196 65 0 chr1 24636499 24636545 -218027808 - MIR SINE MIR -97 165 117 278 231 41 33 chr1 24636974 24637095 -218027258 + C-rich Low_complexity Low_complexity 4 125 0 21 0 0 0 chr1 24637287 24637308 -218027045 + GC_rich Low_complexity Low_complexity 1 21 0 432 0 0 0 chr1 24638305 24638353 -218026000 + (TG)n Simple_repeat Simple_repeat 2 49 0 293 233 0 0 chr1 24638490 24638550 -218025803 - MER5A DNA MER1_type -118 71 12 1684 144 14 18 chr1 24638576 24638853 -218025500 - AluJb SINE Alu -14 298 23 2474 67 0 3 chr1 24638859 24639159 -218025194 - AluY SINE Alu -12 299 1 370 208 104 0 chr1 24639937 24640033 -218024320 - L2 LINE L2 -7 3306 3201 1918 139 38 0 chr1 24640315 24640602 -218023751 + AluJo SINE Alu 1 298 -14 428 259 18 9 chr1 24640675 24640787 -218023566 - MIR3 SINE MIR -7 201 89 299 338 41 28 chr1 24640907 24641052 -218023301 + LTR16C LTR ERVL 162 308 -183 859 150 69 19 chr1 24641053 24641213 -218023140 - AluJo SINE Alu -27 285 118 398 215 13 0 chr1 24641214 24641293 -218023060 + LTR16C LTR ERVL 382 461 -30 258 104 39 117 chr1 24641296 24641373 -218022980 - MIR SINE MIR -118 90 20 927 207 53 5 chr1 24641373 24641581 -218022772 - MER20 DNA MER1_type 0 219 2 192 375 52 0 chr1 24642466 24642562 -218021791 + L2 LINE L2 3213 3313 0 347 270 35 26 chr1 24643107 24643222 -218021131 - MIR SINE MIR -60 202 87 2371 109 0 0 chr1 24645132 24645434 -218018919 - AluSx SINE Alu -10 302 1 191 260 77 39 chr1 24645532 24645636 -218018717 + L2 LINE L2 2941 3048 -224 437 257 71 0 chr1 24645706 24645819 -218018534 - L2 LINE L2 -1 3312 3192 435 313 80 36 chr1 24645945 24646169 -218018184 + MIR SINE MIR 17 250 -12 749 262 52 4 chr1 24646864 24647112 -218017241 + MIR SINE MIR 1 260 -2 405 301 49 18 chr1 24647150 24647313 -218017040 - MIR SINE MIR -48 214 47 273 308 15 45 chr1 24647499 24647632 -218016721 + G-rich Low_complexity Low_complexity 1 129 0 1961 165 0 3 chr1 24648159 24648456 -218015897 - AluJb SINE Alu -16 296 1 680 196 143 24 chr1 24648638 24648847 -218015506 - MIR SINE MIR -16 246 13 2040 129 11 0 chr1 24649592 24649879 -218014474 - AluSx SINE Alu -22 290 1 280 269 93 21 chr1 24651421 24651614 -218012739 + L2 LINE L2 2854 3060 -212 181 250 0 0 chr1 24652303 24652347 -218012006 + MIR SINE MIR 110 153 -109 183 200 0 0 chr1 24652924 24652959 -218011394 - L2 LINE L2 -99 3173 3139 1817 146 4 4 chr1 24653221 24653531 -218010822 - AluSx SINE Alu 0 310 1 2258 70 3 0 chr1 24653634 24653919 -218010434 + AluY SINE Alu 1 286 -25 1646 65 5 0 chr1 24654020 24654234 -218010119 + AluY SINE Alu 97 311 0 2385 63 3 3 chr1 24654278 24654579 -218009774 + AluY SINE Alu 1 301 -10 279 226 0 0 chr1 24654741 24654794 -218009559 + MIR SINE MIR 60 112 -150 697 243 151 37 chr1 24655543 24655761 -218008592 + MIR SINE MIR 5 247 -15 232 347 7 40 chr1 24656667 24656817 -218007536 - L2 LINE L2 -448 2866 2722 1765 121 26 18 chr1 24656916 24657189 -218007164 - L1PB4 LINE L1 -5 6151 5877 198 171 0 0 chr1 24657244 24657285 -218007068 + T-rich Low_complexity Low_complexity 1 41 0 1606 103 4 65 chr1 24657285 24657404 -218006949 - AluSq SINE Alu -63 250 154 2022 84 0 81 chr1 24657404 24657727 -218006626 - AluSx SINE Alu -15 297 1 1606 103 4 65 chr1 24657727 24657869 -218006484 - AluSq SINE Alu -159 154 5 289 262 252 0 chr1 24658146 24658253 -218006100 + MIR3 SINE MIR 13 146 -62 322 239 31 33 chr1 24658322 24658420 -218005933 + MIR3 SINE MIR 100 193 -15 1013 130 50 0 chr1 24658494 24658655 -218005698 - MER20 DNA MER1_type -4 215 47 24 0 0 0 chr1 24658668 24658692 -218005661 + AT_rich Low_complexity Low_complexity 1 24 0 1818 155 0 17 chr1 24658911 24659208 -218005145 + AluJb SINE Alu 1 292 -20 314 240 42 49 chr1 24659256 24659394 -218004959 + L1ME LINE L1 5690 5807 -314 1639 144 6 35 chr1 24659394 24659706 -218004647 + AluJo SINE Alu 1 303 -9 314 240 42 49 chr1 24659706 24659718 -218004635 + L1ME LINE L1 5807 5818 -303 537 138 12 0 chr1 24659775 24659855 -218004498 - MER2 DNA MER2_type -264 81 1 222 220 231 11 chr1 24659934 24660025 -218004328 + MIR SINE MIR 41 151 -111 775 130 0 0 chr1 24660027 24660135 -218004218 + Tigger7 DNA MER2_type 3 110 -623 1628 169 10 7 chr1 24660135 24660443 -218003910 - AluSq SINE Alu -4 309 1 1041 149 0 0 chr1 24662438 24662612 -218001741 - AluSg/x SINE Alu -5 305 132 24 53 0 0 chr1 24662781 24662819 -218001534 + AT_rich Low_complexity Low_complexity 1 38 0 905 182 67 6 chr1 24663071 24663236 -218001117 + FAM SINE Alu 1 175 0 570 267 113 10 chr1 24665491 24665686 -217998667 - MIR SINE MIR -30 232 18 1669 166 0 13 chr1 24666444 24666746 -217997607 + AluJb SINE Alu 2 299 -13 391 214 233 0 chr1 24666962 24667065 -217997288 - MER5A DNA MER1_type 0 189 63 2683 152 116 43 chr1 24667075 24667680 -217996673 - L1MB7 LINE L1 0 6184 5536 839 214 46 12 chr1 24669126 24669263 -217995090 - MLT1F1 LTR MaLR -8 559 428 1786 127 0 34 chr1 24669263 24669554 -217994799 + AluJo SINE Alu 1 281 -31 839 214 46 12 chr1 24669554 24669845 -217994508 - MLT1F1 LTR MaLR -139 428 3 720 213 57 0 chr1 24670104 24670245 -217994108 + FAM SINE Alu 1 149 -36 2207 71 0 4 chr1 24670248 24670557 -217993796 - AluY SINE Alu 0 308 1 1013 87 0 53 chr1 24670557 24670707 -217993646 - AluSp SINE Alu -19 294 153 182 311 197 45 chr1 24671003 24671208 -217993145 - L2 LINE L2 -1314 2000 1827 886 193 0 0 chr1 24671208 24671358 -217992995 + FRAM SINE Alu 1 150 -16 182 311 197 45 chr1 24671358 24671680 -217992673 - L2 LINE L2 -1487 1827 1393 293 250 102 28 chr1 24671754 24671862 -217992491 + MER46C DNA MER2_type 63 178 -160 307 121 127 0 chr1 24671914 24671996 -217992357 + L1ME3A LINE L1 5825 5919 -251 186 133 0 0 chr1 24672254 24672284 -217992069 + (TG)n Simple_repeat Simple_repeat 2 31 0 274 243 122 0 chr1 24672451 24672525 -217991828 - MIR SINE MIR -73 189 107 1667 171 20 3 chr1 24672857 24673150 -217991203 + AluSx SINE Alu 1 298 -14 2110 86 3 17 chr1 24673693 24673995 -217990358 - AluSc SINE Alu -11 298 1 333 68 0 0 chr1 24674190 24674234 -217990119 + (GA)n Simple_repeat Simple_repeat 2 45 0 346 268 52 0 chr1 24674388 24674485 -217989868 + MIR SINE MIR 47 148 -60 1333 194 155 85 chr1 24674732 24674798 -217989555 - MLT1D LTR MaLR -2 503 443 1550 138 16 84 chr1 24674798 24675109 -217989244 + AluJo SINE Alu 2 291 -21 1905 140 7 0 chr1 24675110 24675395 -217988958 + AluSx SINE Alu 1 287 -25 1333 194 155 85 chr1 24675395 24675757 -217988596 - MLT1D LTR MaLR -62 443 35 1562 143 47 63 chr1 24675757 24676057 -217988296 - AluJo SINE Alu -17 295 1 1333 194 155 85 chr1 24676057 24676095 -217988258 - MLT1D LTR MaLR -470 35 1 282 311 0 0 chr1 24676367 24676457 -217987896 + MIR SINE MIR 34 123 -85 987 253 59 13 chr1 24676721 24676958 -217987395 + MIR SINE MIR 13 260 -2 2108 99 7 3 chr1 24677037 24677331 -217987022 - AluSp SINE Alu -18 295 1 2283 93 0 0 chr1 24677357 24677658 -217986695 - AluSx SINE Alu -11 301 1 431 308 103 11 chr1 24678724 24678909 -217985444 - MIR SINE MIR 0 262 61 370 227 9 73 chr1 24678922 24679032 -217985321 - L2 LINE L2 -203 3069 2967 964 163 22 22 chr1 24679284 24679468 -217984885 + MLT1A1 LTR MaLR 2 185 -180 941 97 0 84 chr1 24679825 24679910 -217984443 + MLT1A1 LTR MaLR 224 293 -72 2043 92 18 11 chr1 24679910 24680217 -217984136 - AluSq SINE Alu 0 309 1 941 97 0 84 chr1 24680217 24680285 -217984068 + MLT1A1 LTR MaLR 293 365 0 558 272 134 5 chr1 24680285 24680487 -217983866 + MIR SINE MIR 35 262 0 228 213 0 93 chr1 24680634 24680709 -217983644 + MIR SINE MIR 183 250 -12 1783 159 3 28 chr1 24681675 24681995 -217982358 - AluJo SINE Alu 0 312 1 709 199 0 22 chr1 24682005 24682141 -217982212 - FLAM_A SINE Alu 0 133 1 957 51 153 0 chr1 24682150 24682287 -217982066 - AluY SINE Alu -18 293 136 338 350 20 25 chr1 24682372 24682569 -217981784 - L2 LINE L2 -2 3311 3116 1787 116 36 4 chr1 24682705 24683010 -217981343 - AluJb SINE Alu 0 314 1 1732 168 0 14 chr1 24683010 24683306 -217981047 - AluJb SINE Alu -19 293 1 243 204 19 19 chr1 24683366 24683420 -217980933 - L2 LINE L2 -80 3233 3180 649 177 3 233 chr1 24683422 24683584 -217980769 - MIR SINE MIR -16 246 175 2239 100 7 0 chr1 24683584 24683893 -217980460 - AluSx SINE Alu -1 311 1 649 177 3 233 chr1 24683893 24684013 -217980340 - MIR SINE MIR -87 175 29 240 262 16 0 chr1 24684503 24684564 -217979789 + MIR SINE MIR 75 136 -72 1201 77 0 0 chr1 24684611 24684766 -217979587 - L1PB1 LINE L1 -1 6150 5996 2084 98 10 16 chr1 24684772 24685079 -217979274 - AluSx SINE Alu -6 306 2 309 194 79 33 chr1 24685113 24685229 -217979124 - MIR SINE MIR -75 133 20 459 273 42 36 chr1 24686609 24686774 -217977579 - MIR SINE MIR -81 181 16 1637 174 3 7 chr1 24687449 24687475 -217976878 - AluJo SINE Alu -3 309 284 224 0 65 0 chr1 24687475 24687506 -217976847 + (TTTAG)n Simple_repeat Simple_repeat 3 35 0 1637 174 3 7 chr1 24687506 24687789 -217976564 - AluJo SINE Alu -28 284 1 354 293 76 38 chr1 24687852 24688009 -217976344 - L1MC4a LINE L1 -1853 5955 5793 225 0 0 0 chr1 24688247 24688272 -217976081 + (T)n Simple_repeat Simple_repeat 1 25 0 1512 174 0 11 chr1 24688317 24688581 -217975772 - AluJb SINE Alu -51 261 1 552 234 94 42 chr1 24688581 24688867 -217975486 - L1MC4a LINE L1 -1916 5892 5592 21 0 0 0 chr1 24688891 24688912 -217975441 + AT_rich Low_complexity Low_complexity 1 21 0 889 171 76 0 chr1 24689014 24689172 -217975181 + FAM SINE Alu 1 170 -5 1269 127 47 47 chr1 24689373 24689626 -217974727 - AluY SINE Alu -2 309 57 1178 118 0 17 chr1 24689696 24689874 -217974479 - AluSg/x SINE Alu -11 299 125 2334 82 0 0 chr1 24689878 24690182 -217974171 - AluSx SINE Alu -8 304 1 2336 31 0 14 chr1 24690224 24690540 -217973813 - AluY SINE Alu 0 313 2 26 30 0 0 chr1 24690653 24690686 -217973667 + AT_rich Low_complexity Low_complexity 1 33 0 192 77 0 0 chr1 24690852 24690878 -217973475 + (ATG)n Simple_repeat Simple_repeat 3 28 0 363 286 0 0 chr1 24690879 24690963 -217973390 - MIR SINE MIR -21 241 158 1099 185 0 18 chr1 24690988 24691215 -217973138 - AluJo SINE Alu -1 311 89 672 147 6 103 chr1 24691227 24691280 -217973073 - L1MB7 LINE L1 -19 6165 6108 2178 105 3 16 chr1 24691280 24691593 -217972760 + AluSx SINE Alu 1 309 -3 672 147 6 103 chr1 24691593 24691695 -217972658 - L1MB7 LINE L1 -76 6108 6025 468 200 124 0 chr1 24691695 24691800 -217972553 - MIR SINE MIR -99 163 46 332 109 0 0 chr1 24691866 24691912 -217972441 - MER58 DNA MER1_type -18 2402 2357 207 316 13 13 chr1 24691967 24692046 -217972307 + L3 LINE CR1 1359 1437 -140 823 179 26 6 chr1 24692346 24692502 -217971851 + LTR53 LTR ERVL 195 353 -166 1060 149 0 28 chr1 24692510 24692740 -217971613 - FRAM SINE Alu 0 225 1 280 267 117 25 chr1 24692990 24693110 -217971243 + MLT1K LTR MaLR 456 586 -2 1293 196 43 63 chr1 24693314 24693442 -217970911 + AluJo SINE Alu 1 130 -172 1893 114 0 7 chr1 24693442 24693713 -217970640 + AluSx SINE Alu 22 290 -22 1293 196 43 63 chr1 24693713 24693885 -217970468 + AluJo SINE Alu 130 295 -7 1912 134 0 23 chr1 24694160 24694295 -217970058 + AluSx SINE Alu 1 138 -174 2223 108 0 0 chr1 24694295 24694602 -217969751 + AluSx SINE Alu 1 307 -5 1912 134 0 23 chr1 24694602 24694771 -217969582 + AluSx SINE Alu 138 298 -14 36 19 0 19 chr1 24694771 24694782 -217969571 + AT_rich Low_complexity Low_complexity 1 11 -42 2116 109 0 6 chr1 24694782 24695094 -217969259 + AluSq SINE Alu 1 310 -3 36 19 0 19 chr1 24695094 24695136 -217969217 + AT_rich Low_complexity Low_complexity 11 53 0 1669 182 43 29 chr1 24695207 24695624 -217968729 + Charlie4a DNA MER1_type 21 443 -65 1486 126 0 5 chr1 24695636 24695850 -217968503 + AluSx SINE Alu 3 215 -97 1115 113 19 0 chr1 24695852 24696012 -217968341 + L1PA16 LINE L1 5614 5776 -390 1943 119 7 13 chr1 24696015 24696317 -217968036 + AluSx SINE Alu 1 300 -12 2221 114 6 15 chr1 24696317 24696659 -217967694 + L1PA16 LINE L1 5828 6166 0 1760 161 3 3 chr1 24696664 24696962 -217967391 + AluJb SINE Alu 1 298 -14 1841 152 3 0 chr1 24696964 24697280 -217967073 + AluSx SINE Alu 1 312 0 1632 169 0 13 chr1 24698043 24698345 -217966008 + AluJb SINE Alu 2 299 -13 391 214 233 0 chr1 24698561 24698664 -217965689 - MER5A DNA MER1_type 0 189 63 2701 150 116 43 chr1 24698674 24699279 -217965074 - L1MB7 LINE L1 0 6184 5536 864 199 62 28 chr1 24700725 24700862 -217963491 - MLT1F1 LTR MaLR -8 559 428 1786 127 0 34 chr1 24700862 24701153 -217963200 + AluJo SINE Alu 1 281 -31 864 199 62 28 chr1 24701153 24701444 -217962909 - MLT1F1 LTR MaLR -139 428 3 720 213 57 0 chr1 24701703 24701844 -217962509 + FAM SINE Alu 1 149 -36 2327 81 3 0 chr1 24701846 24702143 -217962210 - AluSx SINE Alu -14 298 1 366 254 127 0 chr1 24702210 24702320 -217962033 - L2 LINE L2 -459 2855 2732 939 264 137 48 chr1 24702330 24702746 -217961607 + L2 LINE L2 2859 3311 -2 2475 61 0 0 chr1 24702965 24703259 -217961094 + AluY SINE Alu 1 294 -17 533 205 105 12 chr1 24703286 24703397 -217960956 - L1MC4 LINE L1 -2 8040 7941 273 98 0 0 chr1 24703397 24703438 -217960915 + (TG)n Simple_repeat Simple_repeat 2 42 0 533 205 105 12 chr1 24703438 24703587 -217960766 - L1MC4 LINE L1 -101 7941 7693 499 97 28 0 chr1 24703594 24703666 -217960687 - AluSp/q SINE Alu -8 305 232 1690 164 4 0 chr1 24703687 24703961 -217960392 - AluJo SINE Alu -37 275 1 401 219 172 23 chr1 24703972 24704100 -217960253 - L1MC4 LINE L1 -314 7728 7582 1091 145 257 8 chr1 24704101 24704342 -217960011 - AluSg1 SINE Alu -8 301 1 879 150 123 0 chr1 24704344 24704566 -217959787 - L1MC4 LINE L1 -749 7293 6976 1807 153 17 11 chr1 24704983 24705270 -217959083 + AluJo SINE Alu 1 289 -23 866 202 109 54 chr1 24705329 24705698 -217958655 + MER31-int LTR ERV1 3650 4107 -829 2292 105 0 0 chr1 24705698 24705993 -217958360 - AluSg SINE Alu -15 295 1 2573 43 0 0 chr1 24705999 24706299 -217958054 - AluYa5 SINE Alu -11 300 1 2908 106 2 54 chr1 24706325 24706769 -217957584 - MER1A DNA MER1_type -108 421 1 217 250 0 0 chr1 24706858 24706910 -217957443 + MIR3 SINE MIR 151 202 -6 2463 56 0 7 chr1 24706917 24707221 -217957132 + AluY SINE Alu 1 302 -9 2504 73 0 0 chr1 24707600 24707901 -217956452 + AluY SINE Alu 1 301 -10 2219 117 0 0 chr1 24707922 24708221 -217956132 + AluSx SINE Alu 1 299 -13 2025 138 6 3 chr1 24708923 24709235 -217955118 - AluSq SINE Alu 0 313 1 681 126 189 0 chr1 24709266 24709377 -217954976 - FLAM_C SINE Alu -10 133 2 2176 105 13 19 chr1 24709401 24709716 -217954637 - AluSq SINE Alu 0 313 1 21 36 0 0 chr1 24709719 24709747 -217954606 + AT_rich Low_complexity Low_complexity 1 28 0 182 171 24 0 chr1 24709964 24710005 -217954348 + CT-rich Low_complexity Low_complexity 2 43 0 1442 118 0 0 chr1 24710012 24710216 -217954137 - AluSg/x SINE Alu -37 275 72 1632 151 9 89 chr1 24710274 24710457 -217953896 - AluJo SINE Alu -1 311 166 1757 89 12 32 chr1 24710457 24710703 -217953650 - AluSp SINE Alu -38 275 35 1632 151 9 89 chr1 24710703 24710857 -217953496 - AluJo SINE Alu -146 166 1 2343 97 0 0 chr1 24711583 24711882 -217952471 - AluSg SINE Alu -11 299 1 1646 187 17 17 chr1 24712206 24712500 -217951853 + AluJb SINE Alu 1 294 -18 1597 192 11 11 chr1 24713019 24713300 -217951053 - AluJo SINE Alu -31 281 1 2147 115 0 0 chr1 24713337 24713649 -217950704 + AluSx SINE Alu 1 312 0 792 294 108 51 chr1 24713715 24714124 -217950229 + L2 LINE L2 2551 2935 -378 830 143 0 30 chr1 24714124 24714257 -217950096 - FLAM_C SINE Alu 0 133 5 792 294 108 51 chr1 24714257 24714418 -217949935 + L2 LINE L2 2935 3085 -228 1944 138 0 7 chr1 24714418 24714731 -217949622 - AluSx SINE Alu 0 311 1 792 294 108 51 chr1 24714731 24714844 -217949509 + L2 LINE L2 3085 3276 -37 2211 114 7 0 chr1 24715337 24715634 -217948719 - AluSq SINE Alu -14 299 1 1480 190 0 46 chr1 24715965 24716270 -217948083 + AluJo SINE Alu 1 291 -21 2528 50 0 0 chr1 24716983 24717281 -217947072 - AluY SINE Alu -13 298 1 25 83 0 0 chr1 24717364 24717424 -217946929 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr1 24717467 24717488 -217946865 + AT_rich Low_complexity Low_complexity 1 21 0 2293 75 0 0 chr1 24717548 24717853 -217946500 - AluY SINE Alu 0 305 1 36 40 0 0 chr1 24717920 24717970 -217946383 + AT_rich Low_complexity Low_complexity 1 50 0 806 180 0 22 chr1 24717970 24718109 -217946244 - AluJb SINE Alu -176 136 1 2346 104 0 0 chr1 24719604 24719901 -217944452 + AluSx SINE Alu 1 297 -15 24 53 0 0 chr1 24719935 24719973 -217944380 + AT_rich Low_complexity Low_complexity 1 38 0 342 326 98 36 chr1 24720767 24720960 -217943393 + L2 LINE L2 294 498 -2816 2357 68 14 0 chr1 24720962 24721255 -217943098 - AluSp SINE Alu -16 297 1 312 270 115 0 chr1 24721300 24721448 -217942905 + MER112 DNA MER1_type 37 201 -59 380 324 80 33 chr1 24721481 24721842 -217942511 + L2 LINE L2 505 882 -2432 1058 323 145 18 chr1 24721946 24723021 -217941332 - L2 LINE L2 0 3313 2107 2174 110 10 0 chr1 24724136 24724437 -217939916 - AluSg SINE Alu -6 304 1 2273 82 7 0 chr1 24724671 24724963 -217939390 - AluY SINE Alu -17 294 1 836 164 21 0 chr1 24725806 24725946 -217938407 - FAM SINE Alu -7 42 1 339 177 25 25 chr1 24726692 24726771 -217937582 - HsTC2 DNA Tc2 -36 1862 1784 2493 87 0 0 chr1 24726830 24727142 -217937211 - AluSx SINE Alu 0 312 1 1604 228 97 28 chr1 24727143 24727648 -217936705 - L1MC4a LINE L1 -1979 5829 5290 236 261 43 0 chr1 24727890 24727959 -217936394 - L1MC4a LINE L1 -1133 5013 4942 200 194 0 0 chr1 24731277 24731313 -217933040 + GA-rich Low_complexity Low_complexity 3 38 0 24 53 0 0 chr1 24732579 24732617 -217931736 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr1 24734767 24734794 -217929559 + AT_rich Low_complexity Low_complexity 1 27 0 266 0 29 0 chr1 24735518 24735552 -217928801 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr1 24737421 24737445 -217926908 + AT_rich Low_complexity Low_complexity 1 24 0 1782 158 3 3 chr1 24738909 24739194 -217925159 + AluJo SINE Alu 9 293 -19 2362 52 0 14 chr1 24739540 24739851 -217924502 - AluY SINE Alu 0 307 1 401 255 248 7 chr1 24740435 24740580 -217923773 - MER5A DNA MER1_type -1 188 9 964 130 338 14 chr1 24741052 24741268 -217923085 + AluSg1 SINE Alu 1 286 -23 214 234 21 0 chr1 24741652 24741699 -217922654 - L2 LINE L2 -18 3295 3248 1649 91 159 29 chr1 24741989 24742265 -217922088 - AluSx SINE Alu 0 312 1 1964 131 7 3 chr1 24742294 24742592 -217921761 + AluSx SINE Alu 1 299 -13 406 262 56 94 chr1 24742852 24743085 -217921268 - MIR SINE MIR -27 235 12 1943 150 7 3 chr1 24743331 24743624 -217920729 + AluJb SINE Alu 1 294 -18 251 189 0 0 chr1 24743682 24743735 -217920618 + FLAM SINE Alu 81 133 0 2016 128 3 0 chr1 24743787 24744076 -217920277 - AluSx SINE Alu -16 296 7 2194 92 7 7 chr1 24744308 24744602 -217919751 - AluSx SINE Alu -15 297 4 2092 146 0 3 chr1 24744677 24744978 -217919375 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr1 24745946 24745974 -217918379 + AT_rich Low_complexity Low_complexity 1 28 0 1630 168 42 25 chr1 24746530 24746816 -217917537 + AluJb SINE Alu 1 291 -21 271 313 212 11 chr1 24746915 24747094 -217917259 - MIR SINE MIR -16 246 32 785 126 0 77 chr1 24747099 24747242 -217917111 - FLAM_C SINE Alu -1 132 1 2295 101 0 10 chr1 24748042 24748349 -217916004 + AluSq SINE Alu 1 304 -9 1920 118 0 81 chr1 24748416 24748739 -217915614 + AluSg SINE Alu 1 297 -13 902 102 0 0 chr1 24748740 24748858 -217915495 + AluSq SINE Alu 133 250 -63 198 171 0 0 chr1 24748858 24748899 -217915454 + A-rich Low_complexity Low_complexity 1 41 0 1848 121 26 18 chr1 24748954 24749227 -217915126 + L1PB4 LINE L1 5877 6151 -5 218 303 65 39 chr1 24749326 24749481 -217914872 + L2 LINE L2 2722 2880 -434 665 243 151 37 chr1 24750381 24750599 -217913754 - MIR SINE MIR -15 247 5 277 226 0 0 chr1 24751348 24751401 -217912952 - MIR SINE MIR -150 112 60 2451 66 3 7 chr1 24751563 24751865 -217912488 - AluY SINE Alu -10 301 1 852 135 7 28 chr1 24751865 24752006 -217912347 - AluSq/x SINE Alu -174 138 1 1905 137 0 7 chr1 24752144 24752428 -217911925 - AluSx SINE Alu -30 282 1 187 259 49 37 chr1 24753043 24753124 -217911229 - L2 LINE L2 0 3272 3191 310 269 90 0 chr1 24753563 24753641 -217910712 - L2 LINE L2 -50 3263 3179 465 188 116 22 chr1 24754765 24754903 -217909450 - MIR SINE MIR -12 250 100 21 0 0 0 chr1 24755113 24755134 -217909219 + AT_rich Low_complexity Low_complexity 1 21 0 261 263 0 0 chr1 24755661 24755718 -217908635 - MIR SINE MIR -2 260 204 306 132 0 38 chr1 24755721 24755774 -217908579 + AluJ/FLAM SINE Alu 14 64 -238 243 191 64 0 chr1 24755829 24755876 -217908477 - MIR SINE MIR -119 143 94 2045 151 0 0 chr1 24758244 24758555 -217905798 - AluSx SINE Alu -1 311 1 1019 141 18 0 chr1 24760556 24760726 -217903627 - AluSc SINE Alu -5 304 132 24 53 0 0 chr1 24760895 24760933 -217903420 + AT_rich Low_complexity Low_complexity 1 38 0 860 174 68 6 chr1 24761185 24761346 -217903007 + FAM SINE Alu 1 171 -4 300 137 20 0 chr1 24812299 24812350 -217852003 - Alu SINE Alu -250 52 1 736 86 0 31 chr1 24812351 24812479 -217851874 - Tigger4(Zombi) DNA MER2_type -2019 712 589 1261 92 0 71 chr1 24812479 24812675 -217851678 - AluSq SINE Alu -3 310 129 2414 97 0 3 chr1 24812683 24812994 -217851359 - AluSx SINE Alu -2 310 1 805 126 30 0 chr1 24812994 24813129 -217851224 - Tigger4(Zombi) DNA MER2_type -2134 597 459 2229 66 7 4 chr1 24813129 24813402 -217850951 - AluSx SINE Alu -4 308 35 222 282 118 12 chr1 24813555 24813640 -217850713 + L2 LINE L2 3141 3234 -38 187 310 147 31 chr1 24813716 24813845 -217850508 + MER5B DNA MER1_type 35 178 0 260 206 16 32 chr1 24813908 24813971 -217850382 - MER5A DNA MER1_type 0 189 128 1748 157 65 7 chr1 24814002 24814328 -217850025 - AluJo SINE Alu 0 343 1 213 202 64 0 chr1 24814328 24814396 -217849957 - MER5A DNA MER1_type -114 75 4 1536 116 0 5 chr1 24814920 24815135 -217849218 - AluSg/x SINE Alu -11 301 88 200 150 0 50 chr1 24815148 24815188 -217849165 - MER5A DNA MER1_type -109 80 43 529 136 34 0 chr1 24815296 24815384 -217848969 + AluSg/x SINE Alu 206 296 -13 329 293 10 20 chr1 24815405 24815504 -217848849 - MIR SINE MIR -131 131 34 248 338 120 0 chr1 24816172 24816305 -217848048 + MIR SINE MIR 112 260 -2 302 274 88 44 chr1 24816387 24816500 -217847853 - MIR3 SINE MIR -37 171 54 2020 101 8 4 chr1 24816535 24816803 -217847550 - AluSx SINE Alu 0 312 44 1248 92 0 6 chr1 24816903 24817066 -217847287 - AluSq SINE Alu -151 162 1 2267 212 53 76 chr1 24817070 24817755 -217846598 - L1MEc LINE L1 -5721 675 7 2451 78 3 0 chr1 24817778 24818074 -217846279 + AluSp SINE Alu 1 297 -16 2022 169 3 3 chr1 24818077 24818431 -217845922 - MLT1A1 LTR MaLR 0 365 12 3139 194 26 81 chr1 24818883 24818983 -217845370 - L1MD2 LINE L1 -10 6349 6245 2276 116 0 0 chr1 24818983 24819276 -217845077 - AluSx SINE Alu -9 303 11 3139 194 26 81 chr1 24819276 24819868 -217844485 - L1MD2 LINE L1 -114 6245 5622 2415 64 3 0 chr1 24819868 24820165 -217844188 + AluY SINE Alu 1 298 -13 3139 194 26 81 chr1 24820165 24820281 -217844072 - L1MD2 LINE L1 -737 5622 5501 2150 117 0 3 chr1 24820281 24820572 -217843781 + AluSg SINE Alu 1 290 -20 3139 194 26 81 chr1 24820572 24820613 -217843740 - L1MD2 LINE L1 -858 5501 5543 651 64 27 0 chr1 24820613 24820723 -217843630 + (TA)n Simple_repeat Simple_repeat 2 114 0 1633 119 8 25 chr1 24820814 24821057 -217843296 + AluSq SINE Alu 1 239 -74 289 301 177 8 chr1 24821520 24821680 -217842673 + MIR SINE MIR 3 185 -63 212 369 137 6 chr1 24821917 24822085 -217842268 - MIR SINE MIR -14 248 59 * 263 285 135 36 chr1 24822054 24822140 -217842213 - L2 LINE L2 -453 2861 2785 791 182 0 8 chr1 24822140 24822272 -217842081 - FLAM_C SINE Alu -1 132 2 263 285 135 36 chr1 24822272 24822378 -217841975 - L2 LINE L2 -529 2785 2650 628 257 38 35 chr1 24822497 24822725 -217841628 + MIR SINE MIR 14 247 -15 319 294 59 29 chr1 24823189 24823291 -217841062 + L2 LINE L2 3208 3312 -1 225 65 0 0 chr1 24823354 24823385 -217840968 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 445 294 27 14 chr1 24823389 24823535 -217840818 + MIR SINE MIR 82 229 -33 506 346 80 5 chr1 24823640 24823828 -217840525 + MIR SINE MIR 28 229 -33 533 293 28 11 chr1 24823896 24824077 -217840276 + MIR3 SINE MIR 10 193 -15 199 226 294 10 chr1 24824431 24824533 -217839820 - MIR SINE MIR -62 146 16 2585 60 0 0 chr1 24824558 24824860 -217839493 - AluY SINE Alu -9 302 1 225 0 0 0 chr1 24825020 24825045 -217839308 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 354 237 41 41 chr1 24825047 24825144 -217839209 - L2 LINE L2 -10 3303 3207 407 162 8 2 chr1 24825148 24825230 -217839123 + MSTB LTR MaLR 342 424 -2 882 144 8 0 chr1 24825232 24825364 -217838989 + FLAM_C SINE Alu 1 133 0 2216 103 0 56 chr1 24825696 24826017 -217838336 - AluSx SINE Alu -9 303 1 342 231 77 46 chr1 24826018 24826148 -217838205 + MIR SINE MIR 72 205 -57 2579 70 0 3 chr1 24826454 24826766 -217837587 - AluY SINE Alu 0 311 1 2019 129 14 0 chr1 24826771 24827058 -217837295 - AluSg SINE Alu -19 291 1 438 262 99 35 chr1 24827309 24827368 -217836985 + MIR SINE MIR 20 74 -188 1963 148 37 7 chr1 24827368 24827666 -217836687 + AluJb SINE Alu 1 307 -5 2140 139 3 0 chr1 24827667 24827968 -217836385 + AluSx SINE Alu 1 302 -10 2201 122 0 16 chr1 24827977 24828281 -217836072 + AluSx SINE Alu 1 299 -13 438 262 99 35 chr1 24828281 24828381 -217835972 + MIR SINE MIR 81 202 -60 260 132 226 0 chr1 24828559 24828612 -217835741 - L1MC4 LINE L1 -25 8017 7953 750 257 0 0 chr1 24828649 24828793 -217835560 - FRAM SINE Alu -37 139 1 1387 146 75 50 chr1 24828814 24829135 -217835218 - LTR47A LTR ERVL 0 452 124 620 96 133 59 chr1 24829112 24829247 -217835106 - LTR47A LTR ERVL -257 195 51 * 749 120 137 0 chr1 24829247 24829364 -217834989 + FLAM_C SINE Alu 1 133 -10 338 164 0 0 chr1 24829364 24829419 -217834934 - LTR47A LTR ERVL -397 55 1 1019 202 121 10 chr1 24829419 24829716 -217834637 - L1MC4 LINE L1 -100 7942 7613 2466 96 3 3 chr1 24829721 24830034 -217834319 - AluSq SINE Alu 0 313 1 724 113 50 78 chr1 24831072 24831213 -217833140 + AluJb SINE Alu 2 138 -174 628 197 215 72 chr1 24831224 24831600 -217832753 - LTR33 LTR ERVL 0 521 92 405 246 105 26 chr1 24831751 24831865 -217832488 - MIR3 SINE MIR -73 135 13 1928 186 122 39 chr1 24832296 24832806 -217831547 - MER74B LTR ERVL -15 607 56 455 327 22 88 chr1 24832810 24832921 -217831432 + L1MC4a LINE L1 5757 5874 -1934 1448 159 132 12 chr1 24832921 24833199 -217831154 - AluJb SINE Alu 0 302 1 455 327 22 88 chr1 24833199 24833405 -217830948 + L1MC4a LINE L1 5874 6053 -1755 364 326 126 20 chr1 24833587 24833906 -217830447 - L2 LINE L2 -189 3083 2733 914 200 40 6 chr1 24834058 24834233 -217830120 - MER5A DNA MER1_type -8 181 1 2474 86 0 0 chr1 24834268 24834581 -217829772 - AluSq SINE Alu 0 313 1 485 246 287 31 chr1 24834583 24834872 -217829481 + L2 LINE L2 2926 3288 -25 1670 66 24 5 chr1 24835662 24835875 -217828478 + AluY SINE Alu 87 303 -8 1485 98 94 18 chr1 24836029 24836125 -217828228 + AluSx SINE Alu 9 96 -216 225 0 0 0 chr1 24836125 24836150 -217828203 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1485 98 94 18 chr1 24836150 24836277 -217828076 + AluSx SINE Alu 96 249 -63 188 381 0 12 chr1 24836295 24836379 -217827974 - MIR SINE MIR -93 115 33 424 264 109 0 chr1 24836429 24836539 -217827814 + L2 LINE L2 3191 3312 -1 260 349 91 23 chr1 24836627 24836802 -217827551 - L2 LINE L2 -171 3101 2915 * 301 367 18 9 chr1 24836786 24836895 -217827458 - MIR SINE MIR -141 121 12 414 269 129 6 chr1 24837030 24837201 -217827152 - L2 LINE L2 -6 3266 3075 2244 95 0 3 chr1 24837792 24838075 -217826278 - AluSx SINE Alu -19 293 12 287 222 259 0 chr1 24838084 24838219 -217826134 - L1MC4a LINE L1 -1868 5940 5771 573 229 62 109 chr1 24838343 24838427 -217825926 - MIR SINE MIR -6 256 170 548 179 145 8 chr1 24838427 24838544 -217825809 + FLAM_A SINE Alu 1 133 0 573 229 62 109 chr1 24838544 24838669 -217825684 - MIR SINE MIR -92 170 57 2429 88 0 0 chr1 24838727 24839021 -217825332 - AluSq SINE Alu -19 294 1 2166 121 0 0 chr1 24839237 24839547 -217824806 - AluSx SINE Alu 0 310 1 711 250 105 14 chr1 24839943 24840187 -217824166 + MIR SINE MIR 1 261 -1 1273 152 9 31 chr1 24840894 24841118 -217823235 - AluJo SINE Alu -9 303 85 2426 97 0 0 chr1 24841118 24841417 -217822936 - AluSx SINE Alu -13 299 1 1018 291 21 8 chr1 24841653 24842028 -217822325 - L1MEc LINE L1 -5020 1376 997 771 172 0 0 chr1 24842031 24842147 -217822206 + FLAM_C SINE Alu 2 117 -26 249 139 0 0 chr1 24842256 24842299 -217822054 + (T)n Simple_repeat Simple_repeat 1 43 0 1171 171 8 16 chr1 24842324 24842575 -217821778 - L1MEc LINE L1 -5474 922 674 2337 56 45 0 chr1 24842580 24842867 -217821486 - AluY SINE Alu -9 302 3 234 0 0 0 chr1 24842869 24842895 -217821458 + (T)n Simple_repeat Simple_repeat 1 26 0 2675 92 19 5 chr1 24843005 24843375 -217820978 - THE1C LTR MaLR 0 375 1 241 114 0 0 chr1 24843565 24843600 -217820753 + U2 snRNA snRNA 1 35 -153 400 252 219 32 chr1 24844623 24844869 -217819484 + L2 LINE L2 3008 3299 -14 769 174 0 54 chr1 24844958 24845107 -217819246 - FLAM_C SINE Alu 0 143 3 1486 173 96 7 chr1 24845243 24845393 -217818960 - AluJb SINE Alu -17 295 160 821 19 0 19 chr1 24845393 24845497 -217818856 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 1486 173 96 7 chr1 24845497 24845617 -217818736 - AluJb SINE Alu -152 160 1 307 223 262 0 chr1 24845660 24845763 -217818590 + MIR SINE MIR 85 214 -48 180 270 117 54 chr1 24846383 24846494 -217817859 + L2 LINE L2 3147 3264 -8 619 190 196 28 chr1 24846506 24846685 -217817668 + MER3 DNA MER1_type 1 209 0 2364 99 20 11 chr1 24847401 24847754 -217816599 + THE1C LTR MaLR 3 358 -17 2303 97 7 0 chr1 24847849 24848138 -217816215 - AluSg SINE Alu -19 291 1 22 0 0 0 chr1 24848240 24848262 -217816091 + AT_rich Low_complexity Low_complexity 1 22 0 1717 186 0 30 chr1 24848262 24848558 -217815795 - AluJb SINE Alu -24 288 2 654 142 30 0 chr1 24848614 24848644 -217815709 + CT-rich Low_complexity Low_complexity 1 29 -109 2541 63 0 19 chr1 24848644 24848960 -217815393 - AluY SINE Alu -1 310 1 654 142 30 0 chr1 24848960 24849063 -217815290 + CT-rich Low_complexity Low_complexity 29 138 0 2082 144 0 16 chr1 24849063 24849376 -217814977 - AluSx SINE Alu -4 308 1 406 294 0 0 chr1 24849486 24849588 -217814765 - MIR SINE MIR 0 262 161 1072 142 5 63 chr1 24849592 24849780 -217814573 - AluSg/x SINE Alu 0 310 133 1414 166 46 89 chr1 24849780 24849989 -217814364 - AluJb SINE Alu -1 311 119 423 0 0 0 chr1 24849989 24850036 -217814317 + (TG)n Simple_repeat Simple_repeat 2 48 0 1414 166 46 89 chr1 24850036 24850151 -217814202 - AluJb SINE Alu -193 119 1 1072 142 5 63 chr1 24850151 24850167 -217814186 - AluSg/x SINE Alu -177 133 118 539 274 89 0 chr1 24850210 24850345 -217814008 - MIR SINE MIR -110 152 6 217 265 29 15 chr1 24850562 24850630 -217813723 - MIR SINE MIR -102 106 38 1385 173 113 13 chr1 24850680 24850980 -217813373 + Charlie1b DNA MER1_type 2 331 -192 2171 95 43 13 chr1 24850983 24851118 -217813235 + AluSp SINE Alu 1 131 -182 2457 54 6 50 chr1 24851118 24851435 -217812918 + AluY SINE Alu 1 303 -8 2171 95 43 13 chr1 24851435 24851603 -217812750 + AluSp SINE Alu 131 313 0 430 304 108 13 chr1 24851958 24852116 -217812237 + MIR SINE MIR 20 192 -70 2095 130 14 0 chr1 24852287 24852579 -217811774 + AluSx SINE Alu 3 298 -14 2372 105 0 3 chr1 24852579 24852892 -217811461 + AluSx SINE Alu 1 312 0 382 262 14 64 chr1 24852984 24853125 -217811228 - MER94 DNA DNA 0 134 1 700 174 72 48 chr1 24853416 24853583 -217810770 - MER45A DNA AcHobo -7 171 1 1705 183 15 80 chr1 24853878 24854278 -217810075 + MLT1A2 LTR MaLR 1 374 0 272 314 110 63 chr1 24854387 24854686 -217809667 + L2 LINE L2 2918 3230 -42 265 307 13 0 chr1 24854926 24855001 -217809352 - L2 LINE L2 0 3313 3238 252 298 107 16 chr1 24855079 24855200 -217809153 + MIR SINE MIR 12 143 -119 678 273 96 10 chr1 24855679 24855916 -217808437 - MIR SINE MIR 0 262 7 259 94 57 38 chr1 24855920 24855973 -217808380 + MIR SINE MIR 108 161 -101 519 306 12 12 chr1 24856068 24856228 -217808125 + MIR SINE MIR 31 190 -72 466 277 51 0 chr1 24856476 24856618 -217807735 + MIR SINE MIR 6 151 -100 27 29 0 0 chr1 24857019 24857053 -217807300 + AT_rich Low_complexity Low_complexity 1 34 0 2346 115 0 0 chr1 24857061 24857374 -217806979 + AluSq SINE Alu 1 313 0 511 269 39 85 chr1 24857559 24857709 -217806644 - L1ME LINE L1 -460 5661 5526 2570 62 0 3 chr1 24857709 24858013 -217806340 - AluY SINE Alu -7 304 2 511 269 39 85 chr1 24858013 24858122 -217806231 - L1ME LINE L1 -595 5526 5414 1281 133 121 64 chr1 24858144 24858257 -217806096 - AluJo SINE Alu -39 273 168 1615 104 135 56 chr1 24858257 24858406 -217805947 - AluSx SINE Alu -1 311 175 2205 108 0 0 chr1 24858406 24858694 -217805659 - AluY SINE Alu -23 288 1 1615 104 135 56 chr1 24858694 24858832 -217805521 - AluSx SINE Alu -137 175 1 2187 117 24 0 chr1 24858834 24859125 -217805228 - AluSp SINE Alu -15 298 1 1281 133 121 64 chr1 24859125 24859257 -217805096 - AluJo SINE Alu -144 168 11 2231 91 10 10 chr1 24859293 24859590 -217804763 - AluSx SINE Alu -15 297 1 596 304 34 10 chr1 24860013 24860220 -217804133 + MIR SINE MIR 46 257 -5 180 0 0 0 chr1 24860279 24860299 -217804054 + (TG)n Simple_repeat Simple_repeat 2 21 0 410 283 49 44 chr1 24860911 24861093 -217803260 - MIR3 SINE MIR -3 205 23 789 127 8 15 chr1 24861158 24861292 -217803061 + FLAM_A SINE Alu 1 133 0 395 241 26 52 chr1 24861302 24861418 -217802935 + MER3 DNA MER1_type 12 124 -85 2381 106 3 0 chr1 24861422 24861725 -217802628 - AluSx SINE Alu -8 304 1 221 309 0 0 chr1 24861726 24861781 -217802572 - MIR SINE MIR -117 145 91 217 303 0 57 chr1 24861828 24861950 -217802403 + G-rich Low_complexity Low_complexity 6 120 0 481 183 58 10 chr1 24862314 24862418 -217801935 + MLT1C LTR MaLR 359 467 0 667 265 48 0 chr1 24862465 24862654 -217801699 + L1ME3A LINE L1 5973 6170 0 2209 127 3 10 chr1 24862667 24862981 -217801372 + AluSx SINE Alu 1 312 0 1132 161 60 14 chr1 24863064 24863282 -217801071 - MLT1A2 LTR MaLR -2 372 145 232 211 77 0 chr1 24863368 24863420 -217800933 - MIR SINE MIR -93 169 114 204 89 22 111 chr1 24864160 24864205 -217800148 + MER91B DNA MER1_type 24 64 -126 287 282 19 48 chr1 24864795 24864898 -217799455 - L2 LINE L2 -217 3055 2956 363 296 59 32 chr1 24865141 24865327 -217799026 + MIR SINE MIR 35 225 -37 292 309 7 47 chr1 24865839 24865988 -217798365 + MIR SINE MIR 50 192 -70 2326 94 17 0 chr1 24866189 24866488 -217797865 + AluSg SINE Alu 1 304 -6 2340 68 4 0 chr1 24866488 24866767 -217797586 + AluY SINE Alu 1 281 -30 192 40 0 0 chr1 24866768 24866793 -217797560 + (TA)n Simple_repeat Simple_repeat 1 25 0 368 115 33 0 chr1 24866797 24866858 -217797495 + MIR SINE MIR 73 135 -127 382 247 0 0 chr1 24867139 24867236 -217797117 - L1MB8 LINE L1 -2 6176 6080 281 303 0 0 chr1 24867442 24867508 -217796845 + L2 LINE L2 3241 3306 -7 2297 99 3 7 chr1 24867508 24867811 -217796542 + AluSx SINE Alu 1 302 -10 216 67 0 0 chr1 24867999 24868029 -217796324 + (T)n Simple_repeat Simple_repeat 1 30 0 724 207 35 0 chr1 24868326 24868471 -217795882 + MIR SINE MIR 107 256 -6 445 280 140 33 chr1 24868873 24869338 -217795015 + L2 LINE L2 2740 3252 -61 1146 139 41 0 chr1 24869571 24869743 -217794610 - AluSg/x SINE Alu 0 312 134 2507 73 0 0 chr1 24869743 24870046 -217794307 - AluY SINE Alu -8 303 1 24 0 0 0 chr1 24870047 24870071 -217794282 + AT_rich Low_complexity Low_complexity 1 24 0 218 310 17 78 chr1 24870162 24870278 -217794075 - MIR SINE MIR -65 197 89 252 237 40 13 chr1 24870354 24870430 -217793923 + L2 LINE L2 3195 3272 0 334 311 43 32 chr1 24870763 24870816 -217793537 - L1ME4a LINE L1 0 6121 6070 897 171 32 69 chr1 24870816 24870922 -217793431 - MER3 DNA MER1_type 0 209 114 2129 137 0 3 chr1 24870922 24871222 -217793131 - AluJb SINE Alu -13 299 1 897 171 32 69 chr1 24871222 24871332 -217793021 - MER3 DNA MER1_type -95 114 1 334 311 43 32 chr1 24871332 24871555 -217792798 - L1ME4a LINE L1 -51 6070 5842 297 211 39 19 chr1 24871736 24871840 -217792513 - HAL1b LINE L1 -1 1347 1242 2388 69 0 0 chr1 24871858 24872134 -217792219 - AluSx SINE Alu -15 297 22 195 184 0 0 chr1 24872157 24872195 -217792158 + CT-rich Low_complexity Low_complexity 1 38 0 1752 185 24 0 chr1 24872197 24872489 -217791864 - AluJo SINE Alu -13 299 1 2044 123 10 29 chr1 24872492 24872801 -217791552 - AluJb SINE Alu -9 303 1 686 297 121 34 chr1 24872893 24872998 -217791355 - L1ME4a LINE L1 -116 6005 5911 2318 114 0 0 chr1 24872998 24873296 -217791057 - AluSx SINE Alu -14 298 1 686 297 121 34 chr1 24873296 24873661 -217790692 - L1ME4a LINE L1 -210 5911 5494 1608 188 7 7 chr1 24873663 24873945 -217790408 - AluJb SINE Alu -30 282 1 468 0 0 0 chr1 24873953 24874005 -217790348 + (TTA)n Simple_repeat Simple_repeat 2 53 0 305 98 0 0 chr1 24874008 24874049 -217790304 - FAM SINE Alu -19 156 116 437 255 155 75 chr1 24874084 24874433 -217789920 - L2 LINE L2 -1 3312 2936 1833 133 61 27 chr1 24874537 24874830 -217789523 - AluJo SINE Alu -9 303 1 216 255 0 20 chr1 24875038 24875089 -217789264 - MIR SINE MIR -142 66 17 268 140 60 0 chr1 24875739 24875789 -217788564 - L2 LINE L2 0 3313 3261 349 352 21 7 chr1 24875919 24876061 -217788292 + MIR SINE MIR 39 182 -80 1830 69 4 4 chr1 24877546 24877777 -217786576 - AluSg/x SINE Alu -6 303 73 2497 79 3 0 chr1 24879105 24879409 -217784944 + AluSq SINE Alu 1 305 -8 2414 92 3 0 chr1 24879424 24879729 -217784624 + AluSq SINE Alu 1 306 -7 459 265 77 12 chr1 24880439 24880609 -217783744 + MIR SINE MIR 72 252 -10 544 314 69 16 chr1 24881236 24881481 -217782872 - MIR SINE MIR -3 259 2 372 246 146 8 chr1 24881861 24881991 -217782362 + MIR SINE MIR 4 151 -111 1328 134 97 15 chr1 24882269 24882538 -217781815 + L1MB7 LINE L1 5874 6164 -20 269 279 110 15 chr1 24882597 24882733 -217781620 + MIR SINE MIR 112 260 -2 255 227 126 17 chr1 24883142 24883261 -217781092 - L1ME4a LINE L1 -2 6119 5988 2661 51 0 16 chr1 24883264 24883578 -217780775 - AluY SINE Alu -2 309 1 498 198 0 0 chr1 24885674 24885760 -217778593 + AluJ/FLAM SINE Alu 2 87 -225 2352 82 14 3 chr1 24885761 24886054 -217778299 + AluSq SINE Alu 3 298 -15 2185 116 0 17 chr1 24886071 24886364 -217777989 + AluSx SINE Alu 7 294 -18 323 269 77 51 chr1 24886529 24886685 -217777668 + L2 LINE L2 3020 3179 -93 372 298 62 36 chr1 24886729 24886954 -217777399 - L2 LINE L2 -188 3084 2854 2460 106 0 0 chr1 24887238 24887550 -217776803 + AluSx SINE Alu 1 312 0 209 224 69 0 chr1 24887758 24887816 -217776537 - L2 LINE L2 -4 3309 3248 246 264 0 69 chr1 24887999 24888086 -217776267 + L1ME LINE L1 5389 5469 -693 640 249 129 5 chr1 24888219 24888420 -217775933 + Charlie8 DNA MER1_type 1 226 -2191 324 257 160 35 chr1 24888658 24888802 -217775551 - MIR SINE MIR -64 198 37 715 263 43 5 chr1 24888802 24889011 -217775342 - MIR SINE MIR -5 257 41 438 264 0 9 chr1 24889259 24889395 -217774958 + AluSg/x SINE Alu 174 308 0 358 277 58 80 chr1 24889404 24889473 -217774880 - L2 LINE L2 -612 2702 2633 2159 67 50 21 chr1 24889473 24889756 -217774597 + AluY SINE Alu 2 292 -19 2567 42 10 0 chr1 24889758 24890065 -217774288 + AluY SINE Alu 1 310 -1 358 277 58 80 chr1 24890065 24890180 -217774173 - L2 LINE L2 -682 2632 2519 1044 270 83 33 chr1 24890182 24890760 -217773593 - L2 LINE L2 -1346 1968 1362 2204 128 0 0 chr1 24891081 24891379 -217772974 + AluSx SINE Alu 1 298 -14 319 291 86 0 chr1 24891567 24891684 -217772669 - MIR3 SINE MIR -1 207 81 1044 158 0 2 chr1 24891701 24892158 -217772195 + (CAT)n Simple_repeat Simple_repeat 1 456 0 282 241 69 11 chr1 24892206 24892293 -217772060 - MIR SINE MIR -70 192 101 771 270 58 50 chr1 24892518 24892556 -217771797 + L2 LINE L2 2677 2713 -600 2027 142 0 13 chr1 24892556 24892858 -217771495 + AluSx SINE Alu 1 298 -14 771 270 58 50 chr1 24892858 24892928 -217771425 + L2 LINE L2 2713 2781 -532 2411 72 0 30 chr1 24892928 24893232 -217771121 + AluY SINE Alu 1 295 -16 771 270 58 50 chr1 24893232 24893724 -217770629 + L2 LINE L2 2781 3280 -33 760 213 61 35 chr1 24893727 24893957 -217770396 - MIR SINE MIR -13 249 14 2181 146 0 9 chr1 24894025 24894340 -217770013 + AluSx SINE Alu 1 312 0 1509 289 59 24 chr1 24894482 24894606 -217769747 + L1ME3A LINE L1 5273 5391 -771 2233 91 37 10 chr1 24894606 24894730 -217769623 + AluSq SINE Alu 1 120 -193 2570 59 7 3 chr1 24894730 24895037 -217769316 + AluY SINE Alu 1 308 -3 2233 91 37 10 chr1 24895037 24895209 -217769144 + AluSq SINE Alu 120 305 -8 1509 289 59 24 chr1 24895209 24895741 -217768612 + L1ME3A LINE L1 5391 5952 -210 245 270 16 63 chr1 24895817 24895943 -217768410 + L1ME3A LINE L1 5963 6082 -88 2197 122 7 0 chr1 24896060 24896355 -217767998 + AluSq SINE Alu 1 297 -16 212 260 143 39 chr1 24896380 24896457 -217767896 - L2 LINE L2 -1 3271 3187 748 252 75 35 chr1 24896493 24896719 -217767634 + MIR SINE MIR 17 251 -11 1049 34 0 0 chr1 24896721 24896840 -217767513 + AluY SINE Alu 181 299 -12 284 231 22 55 chr1 24897696 24897787 -217766566 - MIR SINE MIR -58 204 117 333 359 38 16 chr1 24897890 24898074 -217766279 - MER5A DNA MER1_type 0 189 2 221 0 0 33 chr1 24898499 24898529 -217765824 + (CGG)n Simple_repeat Simple_repeat 2 30 0 321 203 54 14 chr1 24898809 24898883 -217765470 + MIR SINE MIR 94 170 -92 1312 94 0 28 chr1 24899753 24899933 -217764420 + AluSg/x SINE Alu 129 303 -7 333 295 90 30 chr1 24899965 24900072 -217764281 - L2 LINE L2 -521 2793 2694 2279 125 0 0 chr1 24900072 24900368 -217763985 + AluSx SINE Alu 1 296 -16 333 295 90 30 chr1 24900368 24900494 -217763859 - L2 LINE L2 -620 2694 2546 759 260 28 124 chr1 24900759 24900999 -217763354 - MLT1K LTR MaLR -8 580 403 2375 110 0 0 chr1 24900999 24901307 -217763046 + AluSx SINE Alu 1 308 -4 759 260 28 124 chr1 24901307 24901524 -217762829 - MLT1K LTR MaLR -185 403 167 279 277 32 32 chr1 24901924 24902018 -217762335 + MIR SINE MIR 120 213 -49 348 83 0 0 chr1 24902048 24902096 -217762257 + (TTCA)n Simple_repeat Simple_repeat 3 50 0 250 290 165 67 chr1 24902097 24902321 -217762032 - L2 LINE L2 -12 3260 3015 198 193 18 70 chr1 24902320 24902377 -217761976 - MIR SINE MIR -11 251 198 * 372 315 8 24 chr1 24903042 24903169 -217761184 - MIR3 SINE MIR -69 139 15 482 306 50 6 chr1 24903365 24903525 -217760828 - MIR SINE MIR -65 197 31 653 290 16 16 chr1 24903629 24903822 -217760531 + MIR SINE MIR 1 193 -69 227 198 0 128 chr1 24904042 24904128 -217760225 + MER69 DNA AcHobo 2452 2526 0 506 211 141 21 chr1 24904136 24904278 -217760075 + MIR SINE MIR 102 260 -2 236 170 223 21 chr1 24904388 24904482 -217759871 - MIR SINE MIR -147 115 3 334 246 206 51 chr1 24905098 24905273 -217759080 + MIR SINE MIR 60 261 -1 806 278 36 20 chr1 24905349 24905597 -217758756 - MIR SINE MIR -9 253 2 255 290 48 34 chr1 24905597 24905735 -217758618 + MIR SINE MIR 52 145 -63 192 351 0 0 chr1 24906057 24906114 -217758239 + MIR SINE MIR 65 121 -141 538 249 52 3 chr1 24906191 24906361 -217757992 + MIR SINE MIR 19 262 0 1256 131 0 16 chr1 24906375 24906551 -217757802 - AluSg/x SINE Alu -3 307 133 2269 105 0 3 chr1 24906551 24906847 -217757506 - AluY SINE Alu -15 296 2 1256 131 0 16 chr1 24906847 24906861 -217757492 - AluSg/x SINE Alu -177 133 120 1598 241 89 8 chr1 24906915 24907388 -217756965 + LTR33 LTR ERVL 3 513 -8 505 324 47 0 chr1 24907493 24907641 -217756712 - L2 LINE L2 -2 3270 3116 1848 115 35 4 chr1 24907664 24907925 -217756428 + AluSx SINE Alu 1 269 -43 194 205 0 26 chr1 24908169 24908208 -217756145 + L2 LINE L2 3035 3072 -200 460 261 43 7 chr1 24908256 24908394 -217755959 - MIR SINE MIR -99 163 21 2427 89 3 0 chr1 24908571 24908874 -217755479 - AluSx SINE Alu -6 306 3 189 74 0 0 chr1 24909525 24909552 -217754801 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 279 281 16 62 chr1 24909720 24909848 -217754505 - L2 LINE L2 -174 3098 2977 466 276 97 7 chr1 24910068 24910213 -217754140 - MIR3 SINE MIR -35 173 16 379 262 96 0 chr1 24910380 24910546 -217753807 - MIR SINE MIR -64 198 56 2348 81 3 10 chr1 24910933 24911228 -217753125 + AluSc SINE Alu 1 293 -16 209 268 0 0 chr1 24911330 24911371 -217752982 - L2 LINE L2 -6 3307 3267 1505 189 0 0 chr1 24911558 24911801 -217752552 + AluJo SINE Alu 11 253 -59 757 226 21 51 chr1 24911828 24912062 -217752291 - MIR SINE MIR 0 262 36 2353 64 0 7 chr1 24912359 24912654 -217751699 - AluY SINE Alu -18 293 1 2407 98 0 0 chr1 24912654 24912951 -217751402 - AluSx SINE Alu -15 297 1 2022 207 47 7 chr1 24912963 24913408 -217750945 - MLT1C LTR MaLR -2 465 3 316 302 163 48 chr1 24913870 24914122 -217750231 + L2 LINE L2 2560 2840 -474 2388 113 0 0 chr1 24914243 24914544 -217749809 - AluSx SINE Alu -11 301 1 203 370 12 0 chr1 24914594 24914675 -217749678 + L2 LINE L2 2916 2997 -275 1549 174 65 4 chr1 24914733 24915008 -217749345 + AluJo SINE Alu 1 292 -20 391 226 98 0 chr1 24915145 24915247 -217749106 + MIR SINE MIR 42 153 -55 342 187 192 0 chr1 24915501 24915607 -217748746 - MIR3 SINE MIR -34 174 46 563 299 96 43 chr1 24916093 24916224 -217748129 - L2 LINE L2 -77 3236 3113 1734 141 108 7 chr1 24916224 24916501 -217747852 + AluSg SINE Alu 1 305 -5 563 299 96 43 chr1 24916501 24916847 -217747506 - L2 LINE L2 -200 3113 2787 2357 92 0 3 chr1 24916847 24917152 -217747201 - AluSx SINE Alu -8 304 1 563 299 96 43 chr1 24917152 24917506 -217746847 - L2 LINE L2 -526 2787 2325 360 239 80 29 chr1 24917578 24917716 -217746637 + L2 LINE L2 3168 3312 -1 953 178 0 0 chr1 24917771 24917928 -217746425 - AluSx SINE Alu -2 308 152 571 132 0 0 chr1 24917929 24918005 -217746348 - AluSx SINE Alu -235 77 2 2411 68 3 3 chr1 24918006 24918301 -217746052 - AluSx SINE Alu -13 299 5 1224 222 20 4 chr1 24918420 24918668 -217745685 - MIR SINE MIR -1 261 10 226 284 176 14 chr1 24918723 24918797 -217745556 + L2 LINE L2 3208 3293 -20 519 222 70 43 chr1 24918906 24919091 -217745262 - MIR SINE MIR -58 204 15 200 200 0 55 chr1 24919284 24919339 -217745014 + C-rich Low_complexity Low_complexity 6 57 0 274 240 125 29 chr1 24919643 24919747 -217744606 + L2 LINE L2 3159 3272 0 690 292 130 34 chr1 24919840 24920193 -217744160 + L2 LINE L2 2926 3312 -1 4330 90 67 7 chr1 24920500 24921099 -217743254 - MER41B LTR ERV1 0 635 1 344 193 0 0 chr1 24921258 24921315 -217743038 - L2 LINE L2 -1 3271 3215 303 315 43 0 chr1 24921675 24921767 -217742586 - L2 LINE L2 0 3272 3177 198 0 0 0 chr1 24921805 24921827 -217742526 + (T)n Simple_repeat Simple_repeat 1 22 0 2475 89 0 13 chr1 24921938 24922254 -217742099 + AluSx SINE Alu 1 312 0 4274 102 19 111 chr1 24922256 24922351 -217742002 + Tigger4(Zombi) DNA MER2_type 1926 2028 -703 2016 160 0 3 chr1 24922351 24922664 -217741689 + AluJb SINE Alu 1 312 0 4274 102 19 111 chr1 24922664 24922824 -217741529 + Tigger4(Zombi) DNA MER2_type 2028 2201 -530 7421 54 2 47 chr1 24922824 24924437 -217739916 + SVA Other Other 1 1384 -2 4274 102 19 111 chr1 24924437 24924511 -217739842 + Tigger4(Zombi) DNA MER2_type 2201 2280 -451 2143 120 0 0 chr1 24924511 24924822 -217739531 - AluSx SINE Alu 0 311 1 4274 102 19 111 chr1 24924822 24924992 -217739361 + Tigger4(Zombi) DNA MER2_type 2280 2464 -267 2501 39 0 48 chr1 24924992 24925303 -217739050 - AluY SINE Alu -15 296 1 4274 102 19 111 chr1 24925303 24925685 -217738668 + Tigger4(Zombi) DNA MER2_type 2464 2731 0 301 261 68 11 chr1 24925686 24925774 -217738579 - MIR SINE MIR -158 104 12 2247 87 0 7 chr1 24925804 24926110 -217738243 + AluSx SINE Alu 2 305 0 292 200 143 0 chr1 24927777 24927847 -217736506 + FRAM SINE Alu 71 150 -16 371 255 209 20 chr1 24927855 24928008 -217736345 + MIR SINE MIR 40 221 -41 265 287 96 11 chr1 24928022 24928116 -217736237 + MIR SINE MIR 53 154 -108 2097 122 0 13 chr1 24928762 24929066 -217735287 + AluSx SINE Alu 1 300 -12 225 321 36 12 chr1 24929601 24929685 -217734668 - L2 LINE L2 -37 3235 3150 478 214 189 19 chr1 24931584 24931743 -217732610 + MIR SINE MIR 59 244 -18 2281 74 30 0 chr1 24931838 24932137 -217732216 - AluY SINE Alu -3 308 1 1497 126 137 36 chr1 24932187 24932465 -217731888 - AluSg SINE Alu -3 307 2 246 286 77 44 chr1 24933165 24933256 -217731097 + MIR3 SINE MIR 10 103 -105 354 219 305 0 chr1 24933414 24933519 -217730834 + MER5A DNA MER1_type 40 176 -13 1132 171 9 43 chr1 24934079 24934290 -217730063 - AluJb SINE Alu -21 291 88 1928 110 0 0 chr1 24934923 24935178 -217729175 - AluSg SINE Alu -12 298 44 188 161 0 0 chr1 24935422 24935453 -217728900 + MIR SINE MIR 7 37 -225 385 162 144 0 chr1 24935463 24935574 -217728779 + L1MA4 LINE L1 6006 6132 -168 904 45 0 27 chr1 24935581 24935693 -217728660 - AluY SINE Alu -9 302 194 886 133 13 0 chr1 24935698 24935856 -217728497 + L1MA4 LINE L1 6138 6297 -3 1598 157 97 0 chr1 24935858 24936126 -217728227 + AluJb SINE Alu 1 294 -18 1451 165 116 15 chr1 24936128 24936395 -217727958 + AluJo SINE Alu 5 298 -14 2375 96 0 0 chr1 24936399 24936702 -217727651 + AluY SINE Alu 1 303 -8 488 214 129 34 chr1 24937202 24937380 -217726973 + MIR SINE MIR 67 261 -1 23 0 0 0 chr1 24937724 24937747 -217726606 + AT_rich Low_complexity Low_complexity 1 23 0 907 162 14 0 chr1 24937819 24937961 -217726392 + FRAM SINE Alu 21 164 -12 2072 112 11 3 chr1 24937961 24938246 -217726107 + AluSq SINE Alu 1 287 -26 199 56 93 0 chr1 24938248 24938302 -217726051 + (TA)n Simple_repeat Simple_repeat 2 60 0 319 262 9 65 chr1 24938304 24938411 -217725942 + L1MC4 LINE L1 6604 6704 -1338 * 323 280 95 53 chr1 24938395 24938584 -217725769 + L1ME4a LINE L1 5768 5964 -157 245 183 94 153 chr1 24938695 24938897 -217725456 + MER112 DNA MER1_type 1 190 -70 210 118 0 0 chr1 24938909 24938943 -217725410 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1926 132 29 0 chr1 24938945 24939218 -217725135 - AluSx SINE Alu -31 281 1 1855 134 105 9 chr1 24939240 24939582 -217724771 - THE1C LTR MaLR 0 375 1 821 195 40 0 chr1 24939595 24939744 -217724609 - FRAM SINE Alu -21 155 1 244 264 10 0 chr1 24939821 24939887 -217724466 - L3 LINE CR1 -10 1572 1506 296 275 121 67 chr1 24939889 24940038 -217724315 + MER5A DNA MER1_type 15 182 -7 1257 178 0 61 chr1 24940319 24940410 -217723943 + AluJo SINE Alu 54 149 -163 2178 127 7 0 chr1 24940410 24940710 -217723643 + AluSx SINE Alu 1 302 -10 2347 79 10 10 chr1 24940712 24941016 -217723337 + AluSc SINE Alu 1 304 -5 1257 178 0 61 chr1 24941016 24941185 -217723168 + AluJo SINE Alu 150 301 -11 1698 137 59 42 chr1 24941185 24941320 -217723033 + AluSx SINE Alu 1 132 -180 2479 57 3 17 chr1 24941320 24941621 -217722732 + AluSp SINE Alu 1 297 -16 1698 137 59 42 chr1 24941621 24941792 -217722561 + AluSx SINE Alu 132 312 0 2468 53 0 10 chr1 24941813 24942112 -217722241 + AluY SINE Alu 1 296 -15 2620 237 144 80 chr1 24942127 24942756 -217721597 - L2 LINE L2 -2 3311 2723 450 145 0 0 chr1 24942756 24942825 -217721528 + AluJb SINE Alu 152 220 -92 2620 237 144 80 chr1 24942825 24943287 -217721066 - L2 LINE L2 -590 2723 2292 1592 181 0 41 chr1 24943287 24943580 -217720773 + AluJo SINE Alu 1 281 -31 2711 48 0 0 chr1 24943581 24943890 -217720463 + AluY SINE Alu 1 309 -2 2620 237 144 80 chr1 24943890 24944519 -217719834 - L2 LINE L2 -1020 2293 1430 255 290 0 86 chr1 24944529 24944622 -217719731 + L2 LINE L2 2101 2185 -1129 * 282 163 0 0 chr1 24944588 24944637 -217719716 - L2 LINE L2 -1882 1432 1384 372 297 50 0 chr1 24944711 24944812 -217719541 - MIR SINE MIR -68 140 35 1071 158 38 6 chr1 24945020 24945203 -217719150 - MER5A DNA MER1_type 0 189 1 220 215 169 15 chr1 24946061 24946126 -217718227 - L2 LINE L2 0 3313 3239 430 173 13 0 chr1 24946135 24946210 -217718143 - MIR SINE MIR -175 87 12 744 224 41 0 chr1 24946215 24946385 -217717968 + MER113 DNA MER1_type? 342 518 -3 439 242 187 16 chr1 24946758 24946940 -217717413 + MIR SINE MIR 20 232 -30 2571 59 7 0 chr1 24947001 24947308 -217717045 + AluY SINE Alu 1 309 -2 190 284 118 29 chr1 24947351 24947453 -217716900 - L2 LINE L2 -656 2658 2548 2482 82 0 0 chr1 24947775 24948078 -217716275 + AluY SINE Alu 1 303 -8 334 277 11 21 chr1 24948458 24948552 -217715801 + L3 LINE CR1 1040 1132 -445 2245 111 0 10 chr1 24948552 24948850 -217715503 + AluSx SINE Alu 1 295 -17 509 154 43 111 chr1 24948850 24948921 -217715432 - MER5A DNA MER1_type -54 135 74 2442 81 3 0 chr1 24948921 24949217 -217715136 + AluSq SINE Alu 1 297 -16 509 154 43 111 chr1 24949217 24949262 -217715091 - MER5A DNA MER1_type -115 74 27 339 258 13 66 chr1 24949301 24949355 -217714998 - L2 LINE L2 -550 2764 2709 691 213 0 22 chr1 24949355 24949491 -217714862 - FLAM_A SINE Alu 0 133 1 339 258 13 66 chr1 24949491 24949587 -217714766 - L2 LINE L2 -605 2709 2622 1145 165 192 4 chr1 24949751 24950011 -217714342 - MER21B LTR ERV1 -201 662 354 239 313 169 0 chr1 24950191 24950274 -217714079 - MIR SINE MIR -109 99 2 2421 109 0 0 chr1 24950484 24950795 -217713558 - AluSx SINE Alu -1 311 1 265 283 243 17 chr1 24951039 24951216 -217713137 - MIR SINE MIR -44 218 2 766 164 8 15 chr1 24951255 24951389 -217712964 - FLAM_A SINE Alu 0 133 1 564 222 151 0 chr1 24951492 24951618 -217712735 + FAM SINE Alu 12 156 -29 2294 101 13 13 chr1 24951618 24951926 -217712427 + AluSg SINE Alu 3 310 0 244 273 193 0 chr1 24952253 24952341 -217712012 - L2 LINE L2 -59 3213 3109 189 292 21 0 chr1 24952342 24952390 -217711963 - L2 LINE L2 -81 3191 3143 2764 159 51 30 chr1 24952439 24953012 -217711341 + L1MB3 LINE L1 5598 6182 -1 25 51 0 0 chr1 24953045 24953084 -217711269 + AT_rich Low_complexity Low_complexity 1 39 0 351 267 79 69 chr1 24953211 24953413 -217710940 - L2 LINE L2 -262 3051 2848 219 178 200 0 chr1 24953725 24953770 -217710583 - MIR SINE MIR -66 142 89 744 221 191 4 chr1 24953775 24954037 -217710316 + MER115 DNA AcHobo 102 412 -281 1873 150 75 112 chr1 24954047 24954459 -217709894 - MLT1D LTR MaLR 0 505 114 854 147 0 0 chr1 24954459 24954575 -217709778 - FLAM_C SINE Alu -17 116 1 1873 150 75 112 chr1 24954575 24954681 -217709672 - MLT1D LTR MaLR -391 114 6 920 210 75 71 chr1 24954686 24954953 -217709400 + MER115 DNA AcHobo 418 685 -8 299 351 136 35 chr1 24955281 24955620 -217708733 - L2 LINE L2 -64 3208 2836 285 89 0 0 chr1 24955640 24955685 -217708668 + (A)n Simple_repeat Simple_repeat 1 45 0 2354 87 19 19 chr1 24955701 24956011 -217708342 + AluSx SINE Alu 3 312 0 312 274 22 74 chr1 24956030 24956165 -217708188 + L2 LINE L2 3145 3272 0 2456 101 0 0 chr1 24956170 24956478 -217707875 + AluSx SINE Alu 1 308 -4 1784 142 84 0 chr1 24956490 24956764 -217707589 + AluJb SINE Alu 1 297 -15 2388 89 0 0 chr1 24956771 24957064 -217707289 + AluSg SINE Alu 1 293 -17 2333 102 16 0 chr1 24957065 24957369 -217706984 + AluSp SINE Alu 2 310 -3 323 194 41 102 chr1 24957370 24957468 -217706885 + MER5B DNA MER1_type 84 175 -3 289 346 132 11 chr1 24957549 24957815 -217706538 - L2 LINE L2 -648 2666 2369 2549 56 0 7 chr1 24957834 24958137 -217706216 - AluY SINE Alu -10 301 1 2324 98 0 3 chr1 24958196 24958501 -217705852 - AluSg SINE Alu -6 304 1 2437 74 3 3 chr1 24958839 24959137 -217705216 + AluSp SINE Alu 1 298 -15 542 239 58 22 chr1 24959307 24959486 -217704867 + L1MC/D LINE L1 5476 5653 -740 2372 75 0 3 chr1 24959545 24959839 -217704514 + AluSx SINE Alu 1 293 -19 2411 72 0 47 chr1 24959839 24960157 -217704196 + AluY SINE Alu 1 303 -8 2223 104 0 0 chr1 24960177 24960476 -217703877 - AluSg SINE Alu 0 302 4 285 29 0 0 chr1 24960478 24960512 -217703841 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2119 108 18 0 chr1 24960512 24960790 -217703563 - AluSx SINE Alu -29 283 1 720 179 0 30 chr1 24960795 24960929 -217703424 - FLAM_C SINE Alu -3 130 1 2528 78 0 0 chr1 24961032 24961338 -217703015 + AluSp SINE Alu 1 306 -7 783 258 43 5 chr1 24961550 24961759 -217702594 + MIR SINE MIR 41 257 -5 356 264 153 28 chr1 24961759 24961903 -217702450 + MIR SINE MIR 37 198 -64 607 249 129 5 chr1 24962141 24962342 -217702011 - Charlie8 DNA MER1_type -2191 226 1 236 264 0 69 chr1 24962475 24962562 -217701791 - L1ME LINE L1 -695 5469 5389 226 224 69 0 chr1 24962745 24962803 -217701550 + L2 LINE L2 3248 3309 -4 2452 106 0 0 chr1 24963019 24963331 -217701022 - AluSx SINE Alu 0 312 1 417 293 62 36 chr1 24963616 24963841 -217700512 + L2 LINE L2 2854 3084 -188 376 294 188 33 chr1 24963885 24964157 -217700196 - L2 LINE L2 -93 3179 2866 2179 116 0 17 chr1 24964206 24964499 -217699854 - AluSx SINE Alu -18 294 7 2371 78 14 3 chr1 24964516 24964811 -217699542 - AluSq SINE Alu -15 298 1 232 127 79 32 chr1 24964811 24964874 -217699479 - MER116 DNA Mariner -14 66 1 1072 139 6 6 chr1 24964922 24965135 -217699218 - AluJo SINE Alu 0 330 118 534 163 96 104 chr1 24965135 24965226 -217699127 + MER113 DNA MER1_type? 32 122 -399 2292 130 0 0 chr1 24965226 24965534 -217698819 - AluSg SINE Alu -2 308 1 534 163 96 104 chr1 24965534 24965682 -217698671 + MER113 DNA MER1_type? 122 269 -252 2108 125 0 3 chr1 24965748 24966036 -217698317 + AluSc SINE Alu 1 287 -22 2250 113 0 3 chr1 24966043 24966345 -217698008 + AluSq SINE Alu 1 301 -12 337 323 89 46 chr1 24966393 24966521 -217697832 - L2 LINE L2 -723 2591 2470 2322 94 0 10 chr1 24966521 24966819 -217697534 + AluSx SINE Alu 1 295 -17 337 323 89 46 chr1 24966819 24966972 -217697381 - L2 LINE L2 -844 2470 2298 660 334 63 52 chr1 24967198 24967525 -217696828 - L2 LINE L2 -929 2385 2046 2250 99 0 33 chr1 24967525 24967828 -217696525 - AluSx SINE Alu -19 293 1 660 334 63 52 chr1 24967828 24968102 -217696251 - L2 LINE L2 -1268 2046 1777 259 206 87 54 chr1 24968119 24968144 -217696209 - L2 LINE L2 -1 3312 3289 2307 118 7 0 chr1 24968144 24968450 -217695903 + AluSx SINE Alu 1 308 -4 259 206 87 54 chr1 24968450 24968516 -217695837 - L2 LINE L2 -24 3289 3218 739 169 46 8 chr1 24968517 24968647 -217695706 + AluJo SINE Alu 1 135 -177 21 0 0 0 chr1 24968647 24968668 -217695685 + AT_rich Low_complexity Low_complexity 1 21 0 2317 83 21 0 chr1 24968668 24968958 -217695395 + AluSp SINE Alu 1 296 -17 357 228 416 0 chr1 24968967 24969116 -217695237 - L2 LINE L2 -80 3233 3023 2045 118 4 0 chr1 24969178 24969458 -217694895 - AluSx SINE Alu -11 301 21 290 294 73 57 chr1 24969526 24969703 -217694650 + L2 LINE L2 2704 2883 -431 568 275 46 62 chr1 24969797 24970037 -217694316 + MIR SINE MIR 20 255 -7 275 327 71 9 chr1 24970177 24970290 -217694063 + MIR SINE MIR 23 142 -120 2396 92 3 0 chr1 24970299 24970593 -217693760 + AluSg SINE Alu 1 295 -15 2352 61 4 0 chr1 24970712 24971032 -217693321 - AluY SINE Alu 0 321 1 22 0 0 0 chr1 24971033 24971055 -217693298 + AT_rich Low_complexity Low_complexity 1 22 0 1906 142 64 3 chr1 24971265 24971560 -217692793 - 7SLRNA srpRNA srpRNA -7 313 1 191 204 45 0 chr1 24971650 24971694 -217692659 + MIR SINE MIR 100 145 -63 219 184 189 160 chr1 24971762 24971795 -217692558 - L2 LINE L2 -1 3312 3281 2443 92 0 3 chr1 24971795 24972101 -217692252 + AluSq SINE Alu 1 305 -8 219 184 189 160 chr1 24972101 24972273 -217692080 - L2 LINE L2 -32 3281 3101 2131 113 30 7 chr1 24972361 24972662 -217691691 - AluSx SINE Alu -4 308 1 2463 97 0 0 chr1 24973092 24973402 -217690951 + AluSx SINE Alu 1 310 -2 328 299 31 31 chr1 24973569 24973696 -217690657 - MIR SINE MIR -125 137 11 1435 132 41 101 chr1 24973878 24974196 -217690157 - AluSq SINE Alu -14 299 1 2259 95 30 0 chr1 24974198 24974494 -217689859 - AluSx SINE Alu -7 305 1 1774 151 38 24 chr1 24974613 24974904 -217689449 + AluJb SINE Alu 1 295 -17 2247 62 7 7 chr1 24974909 24975183 -217689170 + AluY SINE Alu 1 274 -37 36 0 0 0 chr1 24975398 24975434 -217688919 + AT_rich Low_complexity Low_complexity 1 36 0 2459 96 0 0 chr1 24975684 24975986 -217688367 + AluSx SINE Alu 1 302 -10 1837 132 59 33 chr1 24976099 24976402 -217687951 - AluJo SINE Alu -1 311 1 234 255 0 20 chr1 24976610 24976661 -217687692 - MIR SINE MIR -142 66 17 284 140 60 0 chr1 24977311 24977361 -217686992 - L2 LINE L2 0 3313 3261 370 298 38 67 chr1 24977367 24977633 -217686720 + MIR SINE MIR 35 185 -23 1824 69 4 4 chr1 24979117 24979348 -217685005 - AluSg/x SINE Alu -6 303 73 2483 79 3 0 chr1 24980676 24980980 -217683373 + AluSq SINE Alu 1 305 -8 2442 88 3 0 chr1 24980995 24981301 -217683052 + AluSq SINE Alu 1 307 -6 492 265 77 12 chr1 24982011 24982181 -217682172 + MIR SINE MIR 72 252 -10 589 314 69 16 chr1 24982808 24983053 -217681300 - MIR SINE MIR -3 259 2 408 246 146 8 chr1 24983433 24983563 -217680790 + MIR SINE MIR 4 151 -111 1327 130 97 15 chr1 24983841 24984110 -217680243 + L1MB7 LINE L1 5874 6164 -20 295 272 110 15 chr1 24984169 24984305 -217680048 + MIR SINE MIR 112 260 -2 252 220 138 9 chr1 24984724 24984833 -217679520 - L1ME4a LINE L1 -11 6110 5988 2638 51 0 16 chr1 24984836 24985149 -217679204 - AluY SINE Alu -3 308 1 1588 159 43 53 chr1 24987244 24987332 -217677021 + AluJo SINE Alu 1 88 -224 2286 104 0 0 chr1 24987332 24987621 -217676732 + AluSq SINE Alu 3 291 -22 1588 159 43 53 chr1 24987621 24987834 -217676519 + AluJo SINE Alu 88 299 -13 577 301 46 25 chr1 24987869 24988108 -217676245 + MIR SINE MIR 19 262 0 545 235 35 18 chr1 24988172 24988342 -217676011 + L1MC4a LINE L1 5717 5889 -1919 870 173 27 0 chr1 24988395 24988545 -217675808 - AluSx SINE Alu -5 307 154 574 139 0 0 chr1 24988545 24988624 -217675729 - AluSx SINE Alu -212 100 22 965 180 56 2 chr1 24989608 24989846 -217674507 - AluJo SINE Alu -14 298 1 2064 149 7 0 chr1 24990169 24990465 -217673888 + AluSx SINE Alu 1 298 -14 1213 146 43 0 chr1 24991995 24992180 -217672173 + AluJo SINE Alu 3 195 -117 2313 84 3 3 chr1 24992180 24992467 -217671886 - AluY SINE Alu -24 287 1 1257 165 19 5 chr1 24992520 24992726 -217671627 + AluSg/x SINE Alu 90 298 -14 2478 87 0 3 chr1 24992931 24993242 -217671111 - AluSg SINE Alu 0 310 1 229 330 38 66 chr1 24993563 24993589 -217670764 + MIR SINE MIR 22 47 -215 1232 196 88 28 chr1 24993589 24993874 -217670479 + AluSx SINE Alu 1 302 -10 229 330 38 66 chr1 24993874 24993953 -217670400 + MIR SINE MIR 47 124 -138 1617 190 26 0 chr1 24997073 24997341 -217667012 + AluJb SINE Alu 1 275 -37 1864 157 11 0 chr1 24997418 24997705 -217666648 + AluJb SINE Alu 12 301 -11 193 319 11 43 chr1 24997719 24997813 -217666540 - MIR SINE MIR -148 114 24 248 277 134 34 chr1 24998153 24998272 -217666081 - MIR SINE MIR -3 259 129 350 270 108 18 chr1 24998372 24998483 -217665870 - MIR SINE MIR -128 134 14 1793 110 110 18 chr1 24998579 24998860 -217665493 - AluSg1 SINE Alu -2 307 1 1668 179 24 7 chr1 24999061 24999358 -217664995 - AluJb SINE Alu -10 302 1 1725 177 48 22 chr1 24999512 24999868 -217664485 + MLT1A1 LTR MaLR 1 365 0 2144 92 35 50 chr1 24999892 25000209 -217664144 - AluSx SINE Alu 0 312 1 2298 95 0 14 chr1 25000221 25000517 -217663836 - AluSx SINE Alu -20 292 1 187 238 0 71 chr1 25000521 25000563 -217663790 + MER5A DNA MER1_type 150 188 -1 1846 162 10 22 chr1 25000698 25000831 -217663522 + AluJb SINE Alu 1 134 -178 1944 94 4 0 chr1 25000831 25001075 -217663278 + AluSp SINE Alu 1 245 -68 263 27 0 27 chr1 25001076 25001113 -217663240 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 1846 162 10 22 chr1 25001113 25001291 -217663062 + AluJb SINE Alu 133 310 -2 2414 93 13 0 chr1 25001291 25001592 -217662761 + AluSp SINE Alu 1 305 -8 301 157 29 57 chr1 25001593 25001663 -217662690 - L2 LINE L2 -86 3227 3160 2473 83 0 0 chr1 25001663 25001965 -217662388 - AluSc SINE Alu -7 302 1 2611 55 3 0 chr1 25001965 25002272 -217662081 - AluY SINE Alu -2 309 1 216 354 31 24 chr1 25002282 25002409 -217661944 - MER5B DNA MER1_type -44 134 7 357 177 89 13 chr1 25002486 25002565 -217661788 + MIR SINE MIR 107 191 -71 1894 137 47 3 chr1 25003001 25003300 -217661053 + AluSx SINE Alu 1 312 0 1142 184 28 18 chr1 25003313 25003530 -217660823 + MER20 DNA MER1_type 1 219 0 672 217 120 120 chr1 25003535 25003917 -217660436 - MLT1I LTR MaLR -21 388 7 668 67 0 0 chr1 25003925 25004014 -217660339 + L1PB1 LINE L1 6059 6147 -4 552 219 219 44 chr1 25004119 25004245 -217660108 + MIR SINE MIR 14 117 -145 1865 117 24 103 chr1 25004245 25004379 -217659974 + AluYb8 SINE Alu 1 144 -174 2293 125 0 0 chr1 25004379 25004683 -217659670 + AluSg SINE Alu 1 304 -6 2270 82 36 0 chr1 25004685 25004966 -217659387 + AluY SINE Alu 3 293 -18 1865 117 24 103 chr1 25004966 25005169 -217659184 + AluYb8 SINE Alu 145 314 -4 552 219 219 44 chr1 25005169 25005247 -217659106 + MIR SINE MIR 117 254 -8 262 298 64 21 chr1 25005321 25005415 -217658938 - MIR SINE MIR -82 126 29 2507 63 0 0 chr1 25005484 25005784 -217658569 + AluY SINE Alu 1 300 -11 1952 158 0 3 chr1 25005792 25006089 -217658264 + AluJb SINE Alu 10 305 -7 253 241 19 0 chr1 25006089 25006143 -217658210 + MIR SINE MIR 25 79 -183 225 278 42 0 chr1 25006143 25006215 -217658138 + MLT1E3 LTR MaLR 485 559 -65 1916 168 0 0 chr1 25006438 25006735 -217657618 + AluJb SINE Alu 1 297 -15 375 266 0 0 chr1 25007069 25007148 -217657205 - Tigger5 DNA MER2_type -2244 79 1 * 1089 113 73 25 chr1 25007147 25007351 -217657002 - Tigger7 DNA MER2_type -2 2485 2272 * 3325 146 12 16 chr1 25007344 25007905 -217656448 - Tigger7 DNA MER2_type -1908 579 21 372 344 23 0 chr1 25007949 25008080 -217656273 - MIR SINE MIR -29 233 100 195 232 33 59 chr1 25008090 25008178 -217656175 - MIR SINE MIR -73 135 49 727 322 64 4 chr1 25008186 25008453 -217655900 - MER115 DNA AcHobo -71 622 340 651 181 191 71 chr1 25008459 25008741 -217655612 + HAL1 LINE L1 1328 1643 -864 2225 190 114 2 chr1 25008765 25009202 -217655151 + MLT1F LTR MaLR 3 488 -54 1053 233 20 22 chr1 25009206 25009562 -217654791 + LTR2 LTR ERV1 1 449 0 339 140 0 0 chr1 25009562 25009619 -217654734 + MLT1F LTR MaLR 486 542 0 445 211 76 114 chr1 25009647 25009771 -217654582 + MLT1F1 LTR MaLR 71 198 -369 2409 76 0 0 chr1 25009771 25010075 -217654278 + AluSx SINE Alu 1 304 -8 445 211 76 114 chr1 25010075 25010357 -217653996 + MLT1F1 LTR MaLR 198 567 0 404 243 27 108 chr1 25010442 25010562 -217653791 + MIR SINE MIR 49 150 -112 2265 82 20 0 chr1 25010562 25010856 -217653497 - AluSx SINE Alu -12 300 1 404 243 27 108 chr1 25010856 25010920 -217653433 + MIR SINE MIR 150 218 -44 1764 167 7 13 chr1 25011194 25011500 -217652853 - AluJb SINE Alu -8 304 1 474 293 82 9 chr1 25011701 25011933 -217652420 + MER112 DNA MER1_type 1 249 -11 551 254 14 0 chr1 25011941 25012079 -217652274 - MIR3 SINE MIR -14 194 55 621 278 45 53 chr1 25012082 25012132 -217652221 - MIR SINE MIR -2 260 211 2542 43 0 0 chr1 25012132 25012433 -217651920 - AluSc SINE Alu -8 301 1 621 278 45 53 chr1 25012433 25012627 -217651726 - MIR SINE MIR -51 211 18 182 393 0 0 chr1 25012869 25012930 -217651423 + MIR SINE MIR 101 161 -101 200 208 21 0 chr1 25013095 25013143 -217651210 + (CCGAG)n Simple_repeat Simple_repeat 3 51 0 230 266 27 35 chr1 25013525 25013611 -217650742 - MIR SINE MIR -60 148 81 537 232 134 0 chr1 25014363 25014505 -217649848 - MIR3 SINE MIR -3 205 45 2130 101 23 7 chr1 25015269 25015576 -217648777 + AluSx SINE Alu 1 312 0 2032 102 42 0 chr1 25015589 25015872 -217648481 + AluSg SINE Alu 1 295 -15 1966 117 0 0 chr1 25015876 25016149 -217648204 + AluSx SINE Alu 27 299 -13 791 240 57 22 chr1 25016337 25016566 -217647787 + MIR SINE MIR 9 245 -17 397 167 94 0 chr1 25016622 25016718 -217647635 - MER104 DNA Tc2 -2 178 74 2183 113 0 0 chr1 25016806 25017108 -217647245 + AluSx SINE Alu 1 302 -10 616 211 51 58 chr1 25017118 25017274 -217647079 + FRAM SINE Alu 1 155 -11 1738 171 0 3 chr1 25017286 25017572 -217646781 - AluJo SINE Alu -27 285 1 316 304 76 44 chr1 25017572 25017657 -217646696 + L1MCa LINE L1 1902 1983 -4443 1994 91 0 4 chr1 25017657 25017946 -217646407 - AluY SINE Alu 0 308 21 316 304 76 44 chr1 25017946 25018017 -217646336 + L1MCa LINE L1 1983 2064 -4362 * 384 239 45 23 chr1 25017960 25018048 -217646305 - L1MC4 LINE L1 -1339 6703 6614 383 289 23 0 chr1 25017998 25018100 -217646253 + L1MC4 LINE L1 6614 6703 -1339 * 216 0 0 0 chr1 25018100 25018124 -217646229 + (TG)n Simple_repeat Simple_repeat 2 25 0 2066 114 0 10 chr1 25018125 25018424 -217645929 - AluSx SINE Alu -16 296 1 390 246 120 16 chr1 25018424 25018607 -217645746 + L1MC5 LINE L1 7722 7923 -38 727 245 92 10 chr1 25018617 25018813 -217645540 - MIR SINE MIR -49 213 2 2554 49 0 0 chr1 25018900 25019208 -217645145 - AluY SINE Alu -2 309 2 505 150 20 50 chr1 25019371 25019471 -217644882 - AluSg/x SINE Alu 0 312 216 2101 133 0 0 chr1 25019880 25020182 -217644171 + AluSx SINE Alu 1 302 -10 243 238 286 0 chr1 25020753 25020837 -217643516 + L2 LINE L2 3161 3268 -4 202 29 57 0 chr1 25021290 25021325 -217643028 + (TA)n Simple_repeat Simple_repeat 2 38 0 1760 93 0 8 chr1 25021325 25021561 -217642792 - AluSq SINE Alu -79 234 1 207 0 0 0 chr1 25022391 25022414 -217641939 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2252 49 49 0 chr1 25023042 25023329 -217641024 + AluY SINE Alu 1 301 -10 1127 143 0 6 chr1 25023445 25023620 -217640733 + AluJb SINE Alu 127 300 -12 2499 54 0 10 chr1 25024560 25024874 -217639479 - AluY SINE Alu 0 311 1 285 277 24 0 chr1 25025243 25025326 -217639027 - MIR SINE MIR -70 192 108 279 215 77 0 chr1 25025365 25025430 -217638923 + MIR3 SINE MIR 109 178 -30 187 224 61 0 chr1 25025403 25025452 -217638901 + L3 LINE CR1 1525 1576 -1 * 181 83 56 0 chr1 25031134 25031170 -217633183 + (GGGTG)n Simple_repeat Simple_repeat 3 40 0 1950 123 10 3 chr1 25031897 25032189 -217632164 - AluSx SINE Alu -18 294 1 241 250 47 0 chr1 25032636 25032700 -217631653 - MIR SINE MIR -61 147 81 1879 139 14 3 chr1 25032981 25033275 -217631078 - AluJb SINE Alu -15 297 1 433 303 62 0 chr1 25033803 25033965 -217630388 + MIR SINE MIR 26 197 -65 442 296 74 9 chr1 25034663 25034884 -217629469 - MIR SINE MIR -6 256 20 27 62 0 0 chr1 25034927 25034975 -217629378 + GC_rich Low_complexity Low_complexity 1 48 0 275 275 0 0 chr1 25037474 25037543 -217626810 + L2 LINE L2 3169 3237 -35 523 267 111 74 chr1 25037637 25037701 -217626652 - MIR SINE MIR -1 261 201 2061 102 3 10 chr1 25037701 25037871 -217626482 - AluSq SINE Alu -9 304 135 2284 90 3 0 chr1 25037871 25038170 -217626183 - AluSx SINE Alu -11 301 2 2061 102 3 10 chr1 25038170 25038292 -217626061 - AluSq SINE Alu -178 135 14 523 267 111 74 chr1 25038292 25038491 -217625862 - MIR SINE MIR -61 201 2 186 250 71 0 chr1 25038546 25038602 -217625751 - MIR SINE MIR -62 146 87 977 161 0 18 chr1 25038779 25038947 -217625406 - FRAM SINE Alu -14 162 1 249 307 129 0 chr1 25039382 25039483 -217624870 + L2 LINE L2 2946 3059 -254 2222 235 149 16 chr1 25039588 25040436 -217623917 + L2 LINE L2 1236 2195 -1119 1135 216 139 52 chr1 25040517 25040615 -217623738 + L2 LINE L2 2584 2672 -641 2049 104 0 36 chr1 25040615 25040922 -217623431 - AluSx SINE Alu -16 296 1 1135 216 139 52 chr1 25040922 25041497 -217622856 + L2 LINE L2 2672 3313 0 249 206 130 54 chr1 25041536 25041628 -217622725 + L2 LINE L2 3137 3235 -37 329 256 117 104 chr1 25042428 25042744 -217621609 + L2 LINE L2 2953 3272 0 917 159 7 0 chr1 25043403 25043554 -217620799 - AluJb SINE Alu -2 310 159 2121 111 0 0 chr1 25043587 25043875 -217620478 - AluSx SINE Alu -24 288 1 198 0 0 0 chr1 25043887 25043909 -217620444 + (TA)n Simple_repeat Simple_repeat 2 23 0 2364 67 0 0 chr1 25043909 25044207 -217620146 - AluY SINE Alu -13 298 1 399 243 63 0 chr1 25044280 25044391 -217619962 + MLT1C LTR MaLR 59 176 -291 499 279 14 7 chr1 25044564 25044704 -217619649 + MIR3 SINE MIR 3 143 -65 342 275 141 7 chr1 25044842 25044991 -217619362 + MIR SINE MIR 28 196 -66 971 258 144 26 chr1 25045963 25046447 -217617906 - L2 LINE L2 0 3313 2772 469 360 20 45 chr1 25046712 25047004 -217617349 - L2 LINE L2 0 3272 2988 1289 184 31 23 chr1 25047030 25047286 -217617067 - AluJb SINE Alu -16 296 39 380 303 87 53 chr1 25047286 25047550 -217616803 - L2 LINE L2 -340 2974 2702 2284 99 0 0 chr1 25047557 25047859 -217616494 - AluSx SINE Alu -10 302 1 1656 127 24 103 chr1 25047897 25048237 -217616116 - AluYb8 SINE Alu -5 313 1 377 289 53 59 chr1 25048242 25048394 -217615959 + MIR SINE MIR 67 217 -45 698 162 9 0 chr1 25048540 25048651 -217615702 - FRAM SINE Alu -65 111 1 2263 97 0 0 chr1 25049040 25049338 -217615015 - AluSg SINE Alu -12 298 1 2547 157 17 42 chr1 25049414 25049595 -217614758 + MLT1C LTR MaLR 1 185 -282 2281 90 0 0 chr1 25049595 25049896 -217614457 + AluY SINE Alu 1 301 -10 2547 157 17 42 chr1 25049896 25050153 -217614200 + MLT1C LTR MaLR 185 429 -38 2359 97 0 0 chr1 25050153 25050464 -217613889 - AluY SINE Alu 0 311 1 2547 157 17 42 chr1 25050464 25050503 -217613850 + MLT1C LTR MaLR 429 467 0 1588 147 34 34 chr1 25050601 25050894 -217613459 - AluJo SINE Alu -19 293 1 412 232 222 16 chr1 25051041 25051226 -217613127 - MIR SINE MIR -3 259 37 306 258 11 118 chr1 25051694 25051880 -217612473 - MIR SINE MIR 0 262 97 261 253 66 0 chr1 25051912 25052003 -217612350 - MIR SINE MIR -96 112 16 1788 138 41 7 chr1 25052849 25053140 -217611213 + AluJb SINE Alu 4 304 -8 1972 121 21 0 chr1 25053226 25053515 -217610838 - AluSx SINE Alu -17 295 1 436 224 9 52 chr1 25053518 25053634 -217610719 - L2 LINE L2 -14 3299 3189 303 277 36 80 chr1 25053675 25053812 -217610541 + L1MC4a LINE L1 6984 7114 -694 839 215 48 0 chr1 25053846 25054032 -217610321 - MER3 DNA MER1_type 0 209 15 2090 111 0 0 chr1 25054116 25054405 -217609948 + AluSx SINE Alu 1 289 -23 340 146 0 50 chr1 25054478 25054550 -217609803 - Alu SINE Alu -244 55 1 405 309 20 39 chr1 25054584 25054788 -217609565 - L1ME LINE L1 -302 5819 5620 728 171 16 16 chr1 25054861 25054990 -217609363 - FLAM_C SINE Alu -14 129 1 321 307 109 0 chr1 25055459 25055651 -217608702 + L2 LINE L2 2236 2448 -866 2058 117 3 7 chr1 25055744 25056043 -217608310 + AluSx SINE Alu 2 299 -13 1972 132 0 10 chr1 25056043 25056339 -217608014 + AluJb SINE Alu 1 293 -19 428 285 166 25 chr1 25056570 25056805 -217607548 + L2 LINE L2 3037 3304 -9 406 206 157 0 chr1 25057433 25057535 -217606818 + L2 LINE L2 3189 3306 -7 2231 104 0 10 chr1 25057563 25057871 -217606482 + AluSq SINE Alu 1 305 -8 430 209 40 61 chr1 25057957 25058009 -217606344 - MIR SINE MIR -1 261 209 1967 111 7 4 chr1 25058009 25058320 -217606033 - AluSx SINE Alu 0 314 3 430 209 40 61 chr1 25058320 25058414 -217605939 - MIR SINE MIR -53 209 117 884 115 0 47 chr1 25058417 25058565 -217605788 + AluSg/x SINE Alu 170 310 0 392 309 24 0 chr1 25058565 25058688 -217605665 - MIR SINE MIR -136 126 1 398 273 94 7 chr1 25058871 25059020 -217605333 - MIR SINE MIR -73 135 13 401 292 154 17 chr1 25059251 25059488 -217604865 - MIR SINE MIR 0 262 2 430 156 16 0 chr1 25259535 25259599 -217404754 - AluS SINE Alu -247 66 2 1983 156 3 3 chr1 25259625 25259933 -217404420 + AluSx SINE Alu 1 308 -4 452 321 67 12 chr1 25260088 25260253 -217404100 + MIR SINE MIR 67 240 -22 2572 134 38 17 chr1 25260675 25261094 -217403259 - MSTA LTR MaLR 0 428 1 251 258 65 11 chr1 25261112 25261205 -217403148 + L1ME4a LINE L1 5978 6075 -46 465 199 93 43 chr1 25261422 25261481 -217402872 - Charlie1b DNA MER1_type -2238 523 468 2075 167 0 0 chr1 25261481 25261792 -217402561 + AluJb SINE Alu 1 311 -1 465 199 93 43 chr1 25261792 25261893 -217402460 - Charlie1b DNA MER1_type -2293 468 355 978 186 9 62 chr1 25261908 25262134 -217402219 + MER20 DNA MER1_type 2 215 -4 * 1390 188 35 102 chr1 25262131 25262296 -217402057 - Charlie1b DNA MER1_type -2386 375 200 2045 139 0 13 chr1 25262296 25262606 -217401747 - AluSx SINE Alu 0 312 7 1390 188 35 102 chr1 25262606 25262840 -217401513 - Charlie1b DNA MER1_type -2561 200 3 558 293 82 22 chr1 25263159 25263391 -217400962 - MIR SINE MIR -12 250 5 312 252 78 158 chr1 25263428 25263750 -217400603 - L2 LINE L2 -3 3269 2974 648 204 6 93 chr1 25264398 25264560 -217399793 - MIR SINE MIR -103 159 12 1422 107 0 5 chr1 25264948 25265135 -217399218 - AluSq SINE Alu -15 298 113 535 149 0 0 chr1 25265235 25265322 -217399031 - AluS SINE Alu -226 87 1 1824 132 61 20 chr1 25265609 25265904 -217398449 + AluSc SINE Alu 1 307 -2 28 29 0 0 chr1 25266072 25266107 -217398246 + AT_rich Low_complexity Low_complexity 1 35 0 233 254 0 0 chr1 25266479 25266550 -217397803 - L1MC4 LINE L1 0 8042 7972 2111 128 3 0 chr1 25266803 25267091 -217397262 - AluJo SINE Alu -14 298 10 273 305 28 38 chr1 25267343 25267556 -217396797 - L1MC/D LINE L1 -1923 5885 5675 2809 101 3 3 chr1 25267579 25267954 -217396399 - THE1C LTR MaLR 0 375 1 645 313 34 23 chr1 25267954 25268130 -217396223 - MER91A DNA MER1_type -15 181 4 2446 83 7 0 chr1 25268213 25268513 -217395840 - AluSx SINE Alu -10 302 1 309 194 42 0 chr1 25268670 25268742 -217395611 - L1MA10 LINE L1 0 6334 6260 801 166 33 13 chr1 25268844 25269035 -217395318 + AluJb SINE Alu 159 352 0 183 80 0 0 chr1 25269060 25269085 -217395268 + (GGGAA)n Simple_repeat Simple_repeat 3 27 0 1002 100 24 0 chr1 25269088 25269258 -217395095 + (GAAA)n Simple_repeat Simple_repeat 1 174 0 284 252 194 0 chr1 25269451 25269590 -217394763 - MIR SINE MIR -93 169 4 796 170 44 33 chr1 25269597 25269779 -217394574 + MER20 DNA MER1_type 2 185 -34 537 271 71 51 chr1 25269790 25270045 -217394308 - L2 LINE L2 -25 3288 3029 2303 79 0 0 chr1 25270047 25270325 -217394028 + AluSx SINE Alu 21 298 -14 592 227 46 46 chr1 25271169 25271363 -217392990 - MIR SINE MIR -13 249 56 1254 263 137 37 chr1 25271863 25272160 -217392193 + L2 LINE L2 2216 2482 -831 2248 104 7 0 chr1 25272160 25272457 -217391896 - AluSq SINE Alu -14 299 1 1254 263 137 37 chr1 25272457 25273147 -217391206 + L2 LINE L2 2482 3313 0 431 290 57 45 chr1 25273417 25273593 -217390760 + MIR SINE MIR 14 191 -71 541 333 88 37 chr1 25273654 25274302 -217390051 - L2 LINE L2 -15 3257 2576 438 283 111 38 chr1 25274339 25274654 -217389699 + L1ME4a LINE L1 5562 5899 -222 2298 96 0 0 chr1 25274729 25275033 -217389320 + AluSx SINE Alu 1 304 0 203 191 0 24 chr1 25275367 25275409 -217388944 + MIR SINE MIR 113 153 -55 1684 192 0 31 chr1 25275569 25275744 -217388609 - AluJo SINE Alu -4 308 146 1743 142 43 18 chr1 25275744 25276026 -217388327 - AluSx SINE Alu -23 289 1 1684 192 0 31 chr1 25276026 25276168 -217388185 - AluJo SINE Alu -166 146 1 691 248 7 13 chr1 25276168 25276321 -217388032 - MIR SINE MIR -99 163 12 281 223 146 82 chr1 25276346 25276552 -217387801 + MER112 DNA MER1_type 30 248 -12 396 333 89 14 chr1 25276822 25277035 -217387318 - MIR SINE MIR -5 257 29 276 130 0 0 chr1 25278153 25278199 -217386154 + (CA)n Simple_repeat Simple_repeat 2 47 0 301 261 92 59 chr1 25278322 25278475 -217385878 + MER103 DNA DNA 1 158 -8 2269 107 3 0 chr1 25278481 25278779 -217385574 - AluSp SINE Alu -12 301 3 180 0 0 0 chr1 25278781 25278801 -217385552 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 519 316 45 28 chr1 25279454 25279683 -217384670 + MIR SINE MIR 19 250 -12 2051 139 3 7 chr1 25279746 25280055 -217384298 - AluSx SINE Alu -4 308 1 1856 129 7 42 chr1 25280492 25280637 -217383716 + AluJo SINE Alu 1 131 -181 2363 103 0 3 chr1 25280637 25280938 -217383415 + AluSg SINE Alu 1 300 -10 1856 129 7 42 chr1 25280938 25281101 -217383252 + AluJo SINE Alu 131 298 -14 21 36 0 0 chr1 25281101 25281129 -217383224 + AT_rich Low_complexity Low_complexity 1 28 0 3053 216 80 85 chr1 25281314 25282620 -217381733 - MLT1B-int LTR MaLR -72 1299 1 2007 151 53 21 chr1 25282620 25282998 -217381355 - MLT1B LTR MaLR 0 390 1 525 77 26 0 chr1 25282999 25283077 -217381276 - L1ME LINE L1 -440 5724 5645 1392 143 28 9 chr1 25283080 25283297 -217381056 + AluJo SINE Alu 71 291 -21 309 151 0 0 chr1 25283306 25283359 -217380994 + GA-rich Low_complexity Low_complexity 1 53 0 1515 199 85 2 chr1 25283371 25283792 -217380561 - L1ME LINE L1 -521 5643 5190 2017 157 3 6 chr1 25284306 25284619 -217379734 + AluJb SINE Alu 1 312 0 338 176 167 0 chr1 25284888 25284990 -217379363 - MIR SINE MIR -12 250 132 674 176 115 7 chr1 25285020 25285168 -217379185 - MER20 DNA MER1_type -49 170 7 496 222 19 0 chr1 25285169 25285277 -217379076 - MIR SINE MIR -121 141 32 1890 135 31 7 chr1 25286197 25286485 -217377868 - AluJo SINE Alu -17 295 1 1439 219 50 88 chr1 25286929 25287508 -217376845 - L1MC5 LINE L1 -785 7176 6620 2247 109 0 3 chr1 25287537 25287830 -217376523 - AluSx SINE Alu -20 292 1 1467 271 34 0 chr1 25287847 25288256 -217376097 - MLT1-int LTR MaLR -771 600 178 241 111 44 0 chr1 25288316 25288361 -217375992 + MLT1E2 LTR MaLR 272 318 -308 251 254 17 0 chr1 25288379 25288438 -217375915 + L2 LINE L2 3002 3061 -211 282 87 0 0 chr1 25288944 25288990 -217375363 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 210 127 32 32 chr1 25289164 25289227 -217375126 + CT-rich Low_complexity Low_complexity 1 63 0 1714 150 0 92 chr1 25289318 25289644 -217374709 - AluJo SINE Alu -16 296 1 2095 244 18 8 chr1 25289644 25290147 -217374206 + MLT2B3 LTR ERVL 1 508 -46 2175 94 25 3 chr1 25290156 25290442 -217373911 - AluSg SINE Alu -18 292 1 347 284 91 91 chr1 25290452 25290774 -217373579 - L1MC5 LINE L1 -1879 5929 5605 2407 99 0 6 chr1 25290774 25291087 -217373266 - AluSx SINE Alu 0 312 2 347 284 91 91 chr1 25291087 25291278 -217373075 - L1MC5 LINE L1 -2202 5606 5416 185 245 102 0 chr1 25291641 25291690 -217372663 - L3 LINE CR1 -483 1094 1041 305 227 82 9 chr1 25291756 25291866 -217372487 - L1ME4a LINE L1 -12 6109 5992 1393 196 12 0 chr1 25291969 25292219 -217372134 - AluJo SINE Alu -21 291 39 1761 178 14 3 chr1 25292224 25292517 -217371836 - AluJb SINE Alu -16 296 1 24 0 0 0 chr1 25292517 25292541 -217371812 + AT_rich Low_complexity Low_complexity 1 24 0 229 250 0 0 chr1 25292541 25292589 -217371764 - L1ME4a LINE L1 -543 5578 5531 219 298 43 11 chr1 25293058 25293152 -217371201 + MIR SINE MIR 69 165 -97 306 73 0 0 chr1 25293161 25293202 -217371151 + (TG)n Simple_repeat Simple_repeat 2 42 0 1305 26 0 0 chr1 25293237 25293392 -217370961 + L1PA4 LINE L1 6001 6155 0 1063 227 99 37 chr1 25293419 25293451 -217370902 - L2 LINE L2 -626 2688 2659 2129 117 53 42 chr1 25293451 25293811 -217370542 + THE1B LTR MaLR 1 364 0 1063 227 99 37 chr1 25293811 25294153 -217370200 - L2 LINE L2 -655 2659 2291 1879 151 21 3 chr1 25294174 25294459 -217369894 + AluJb SINE Alu 1 290 -22 330 259 175 6 chr1 25294525 25294691 -217369662 - MER117 DNA MER1_type 0 197 4 2548 75 0 0 chr1 25294737 25295043 -217369310 + AluY SINE Alu 1 306 -5 614 293 80 9 chr1 25295044 25295256 -217369097 + MIR SINE MIR 25 251 -11 17533 126 16 94 chr1 25296410 25300135 -217364218 - L1P LINE L1 -2703 3443 12 654 278 217 34 chr1 25300238 25300736 -217363617 + L2 LINE L2 2446 2851 -462 2064 135 7 0 chr1 25300736 25301039 -217363314 - AluSq SINE Alu -3 310 6 654 278 217 34 chr1 25301039 25301267 -217363086 + L2 LINE L2 2851 3313 0 209 196 33 22 chr1 25301426 25301518 -217362835 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 1122 222 4 47 chr1 25302060 25302317 -217362036 - MIR SINE MIR -15 247 2 410 249 77 72 chr1 25302493 25302674 -217361679 + MIR SINE MIR 7 188 -74 408 223 115 15 chr1 25302780 25302910 -217361443 + MIR SINE MIR 120 262 0 1882 148 30 10 chr1 25302960 25303258 -217361095 + AluJo SINE Alu 1 304 -8 319 194 32 0 chr1 25303309 25303371 -217360982 + MIR SINE MIR 93 156 -106 2327 118 0 6 chr1 25304094 25304408 -217359945 + AluSx SINE Alu 1 312 0 320 226 0 71 chr1 25304509 25304593 -217359760 - MIR SINE MIR -109 153 76 567 271 58 50 chr1 25304668 25304703 -217359650 - MIR SINE MIR -2 260 227 577 51 25 13 chr1 25304703 25304782 -217359571 + MADE1 DNA Mariner 1 80 0 567 271 58 50 chr1 25304782 25304966 -217359387 - MIR SINE MIR -35 227 41 387 218 127 0 chr1 25305121 25305231 -217359122 - L1ME3A LINE L1 -188 5982 5859 2964 197 27 56 chr1 25305503 25306190 -217358163 - L1ME2 LINE L1 -10 6154 5489 1950 147 0 7 chr1 25306190 25306500 -217357853 - AluJb SINE Alu 0 308 1 2964 197 27 56 chr1 25306500 25306577 -217357776 - L1ME2 LINE L1 -675 5489 5411 555 250 150 39 chr1 25306752 25306932 -217357421 + MIR SINE MIR 6 205 -57 371 232 20 20 chr1 25307441 25307540 -217356813 + MIR SINE MIR 28 126 -136 183 286 143 41 chr1 25308334 25308432 -217355921 + L3 LINE CR1 1062 1169 -408 372 265 73 114 chr1 25308756 25308891 -217355462 + L2 LINE L2 2916 3055 -258 1785 177 17 3 chr1 25308891 25309190 -217355163 + AluJb SINE Alu 1 303 -9 372 265 73 114 chr1 25309190 25309450 -217354903 + L2 LINE L2 3055 3295 -18 193 107 0 0 chr1 25310150 25310178 -217354175 - L2 LINE L2 -32 3240 3213 * 201 54 27 81 chr1 25310153 25310190 -217354163 - MIR SINE MIR -29 233 199 619 276 31 85 chr1 25310190 25310427 -217353926 - L2 LINE L2 -13 3300 3080 1896 135 0 78 chr1 25310427 25310761 -217353592 - AluJb SINE Alu 0 312 5 619 276 31 85 chr1 25310761 25310816 -217353537 - L2 LINE L2 -233 3080 3024 407 331 20 7 chr1 25310815 25310966 -217353387 - MIR SINE MIR -62 200 48 * 449 317 48 29 chr1 25311581 25311789 -217352564 + L1MC4a LINE L1 5709 5920 -1888 1102 178 0 0 chr1 25311796 25311970 -217352383 - AluJb SINE Alu -6 306 133 225 0 0 0 chr1 25311970 25311995 -217352358 + (TG)n Simple_repeat Simple_repeat 2 26 0 954 225 74 22 chr1 25311999 25312270 -217352083 + AluJo SINE Alu 19 303 -9 21 36 0 0 chr1 25312407 25312435 -217351918 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr1 25312564 25312600 -217351753 + AT_rich Low_complexity Low_complexity 1 36 0 1012 152 91 0 chr1 25312748 25312913 -217351440 + AluJb SINE Alu 115 294 -18 186 43 0 0 chr1 25312922 25312945 -217351408 + (TATG)n Simple_repeat Simple_repeat 4 26 0 2719 211 53 31 chr1 25313003 25313340 -217351013 + MER82 DNA MER2_type 1 361 -292 1762 198 0 0 chr1 25313340 25313657 -217350696 - AluJo SINE Alu 0 317 1 2719 211 53 31 chr1 25313657 25313957 -217350396 + MER82 DNA MER2_type 361 653 0 428 284 29 0 chr1 25314062 25314164 -217350189 + MIR SINE MIR 157 261 -1 1543 184 57 18 chr1 25314166 25314448 -217349905 + AluJo SINE Alu 11 303 -9 213 279 96 48 chr1 25314823 25314927 -217349426 + L2 LINE L2 3160 3268 -4 1870 137 24 14 chr1 25315019 25315311 -217349042 + AluSx SINE Alu 1 295 -17 623 309 26 18 chr1 25315505 25315749 -217348604 - MIR SINE MIR 0 262 18 297 323 24 118 chr1 25315906 25316374 -217347979 + L2 LINE L2 2840 3263 -9 338 321 85 48 chr1 25316441 25316771 -217347582 + L2 LINE L2 2884 3225 -47 299 297 104 15 chr1 25317099 25317237 -217347116 + MIR SINE MIR 16 162 -60 2433 99 0 6 chr1 25317342 25317654 -217346699 + AluSg SINE Alu 1 310 0 340 118 0 0 chr1 25317733 25317784 -217346569 + MIR SINE MIR 110 160 -102 832 263 83 0 chr1 25317802 25318030 -217346323 + MIR SINE MIR 5 251 -11 350 250 33 22 chr1 25318037 25318129 -217346224 + MIR SINE MIR 153 245 -17 562 133 286 0 chr1 25318755 25318860 -217345493 - AluSq/x SINE Alu -176 136 2 1222 164 14 0 chr1 25318961 25319173 -217345180 - MER2 DNA MER2_type -1 344 130 15197 116 28 10 chr1 25319173 25320121 -217344232 - Tigger1 DNA MER2_type 0 2418 1489 2116 124 3 0 chr1 25320121 25320420 -217343933 + AluSg SINE Alu 1 300 -10 15197 116 28 10 chr1 25320420 25321823 -217342530 - Tigger1 DNA MER2_type -929 1489 24 642 133 150 0 chr1 25321832 25321945 -217342408 - MER2 DNA MER2_type -215 130 1 31 0 0 0 chr1 25322028 25322059 -217342294 + AT_rich Low_complexity Low_complexity 1 31 0 647 221 14 0 chr1 25322249 25322389 -217341964 - MLT1A2 LTR MaLR -51 323 182 238 105 0 140 chr1 25322393 25322450 -217341903 - MLT1A2 LTR MaLR -167 207 159 220 296 37 37 chr1 25322473 25322554 -217341799 + L2 LINE L2 3191 3271 -1 497 180 63 149 chr1 25322593 25322772 -217341581 - MIR SINE MIR -69 139 1 2392 71 26 16 chr1 25323455 25323763 -217340590 + AluSx SINE Alu 1 311 -1 221 217 385 0 chr1 25323917 25324000 -217340353 - MIR SINE MIR -74 188 74 296 241 19 28 chr1 25324272 25324380 -217339973 + GA-rich Low_complexity Low_complexity 1 107 0 411 92 0 15 chr1 25324435 25324500 -217339853 - MLT2B2 LTR ERVL 0 515 452 461 71 83 0 chr1 25324503 25324587 -217339766 + AluY SINE Alu 1 91 -220 331 111 16 32 chr1 25324687 25324750 -217339603 - L1M4 LINE L1 -406 5778 5717 266 136 141 153 chr1 25324755 25324884 -217339469 + Charlie5 DNA MER1_type 2352 2480 -144 2511 78 3 0 chr1 25324884 25325190 -217339163 - AluSp SINE Alu -6 307 1 266 136 141 153 chr1 25325190 25325237 -217339116 + Charlie5 DNA MER1_type 2480 2526 -98 637 287 25 4 chr1 25325644 25325828 -217338525 + MIR3 SINE MIR 18 201 -7 492 239 148 14 chr1 25325840 25325982 -217338371 + MIR SINE MIR 36 196 -66 341 268 43 11 chr1 25325988 25326154 -217338199 - MIR SINE MIR -8 254 8 259 343 101 1 chr1 25326218 25326372 -217337981 - MIR3 SINE MIR -40 168 28 293 331 15 31 chr1 25326640 25326770 -217337583 - L2 LINE L2 -8 3264 3137 1017 273 21 10 chr1 25326787 25327112 -217337241 + L1ME LINE L1 5461 5772 -349 358 239 39 41 chr1 25327394 25327542 -217336811 - L1M2 LINE L1 -722 5442 5289 287 268 107 45 chr1 25327731 25327843 -217336510 + MIR SINE MIR 14 132 -130 2027 203 73 29 chr1 25328001 25328374 -217335979 + MLT1D LTR MaLR 5 405 -100 1719 208 13 0 chr1 25328374 25328682 -217335671 - AluJo SINE Alu 0 312 1 2027 203 73 29 chr1 25328682 25328786 -217335567 + MLT1D LTR MaLR 405 503 -2 500 330 64 14 chr1 25328871 25329089 -217335264 - MIR SINE MIR -14 248 20 875 294 78 35 chr1 25329514 25330034 -217334319 + L1ME LINE L1 5275 5824 -297 1345 155 34 75 chr1 25330130 25330252 -217334101 - L1MB2 LINE L1 0 6171 6046 2427 71 0 10 chr1 25330252 25330560 -217333793 - AluSg SINE Alu -5 305 1 1345 155 34 75 chr1 25330560 25330759 -217333594 - L1MB2 LINE L1 -125 6046 5863 1909 58 58 0 chr1 25331211 25331453 -217332900 - AluY SINE Alu 0 311 56 335 210 0 0 chr1 25332221 25332291 -217332062 + MIR SINE MIR 41 109 -105 621 283 61 20 chr1 25332367 25332565 -217331788 - MIR SINE MIR -55 207 2 532 274 139 10 chr1 25333225 25333433 -217330920 + MIR SINE MIR 7 241 -21 197 175 25 25 chr1 25333422 25333462 -217330891 + L2 LINE L2 3216 3255 -17 * 210 254 55 0 chr1 25333630 25333685 -217330668 - MIR SINE MIR -168 94 37 211 317 73 0 chr1 25333871 25333953 -217330400 - MIR SINE MIR -169 93 6 424 321 48 31 chr1 25334642 25335103 -217329250 - MLT1L LTR MaLR -3 611 123 233 189 113 0 chr1 25335072 25335125 -217329228 - MLT1L LTR MaLR -414 201 143 * 662 209 30 0 chr1 25335200 25335334 -217329019 + MLT1J2 LTR MaLR 18 155 -295 405 288 9 0 chr1 25335364 25335475 -217328878 - MER58C DNA MER1_type 0 215 104 429 246 23 8 chr1 25335495 25335625 -217328728 - MER58C DNA MER1_type -83 132 1 334 263 59 25 chr1 25335660 25335778 -217328575 + MLT1J2 LTR MaLR 265 386 -64 1906 124 59 12 chr1 25335785 25336124 -217328229 - L1MB3 LINE L1 -1 6182 5828 1861 124 4 11 chr1 25336124 25336398 -217327955 - AluSq SINE Alu 0 313 42 2366 88 0 3 chr1 25336398 25336694 -217327659 - AluSx SINE Alu -17 295 1 1628 195 127 22 chr1 25336722 25337138 -217327215 - LTR64 LTR ERVK -96 462 3 231 277 62 27 chr1 25337139 25337251 -217327102 + MIR SINE MIR 14 129 -133 289 307 45 0 chr1 25338315 25338403 -217325950 + MIR SINE MIR 1 92 -170 351 306 104 35 chr1 25339144 25339288 -217325065 + L2 LINE L2 3119 3272 0 219 260 110 14 chr1 25339693 25339766 -217324587 + MIR SINE MIR 111 190 -72 586 320 46 58 chr1 25339916 25340347 -217324006 + L2 LINE L2 2868 3293 -20 352 304 0 0 chr1 25340453 25340532 -217323821 + MIR SINE MIR 1 79 -183 413 294 57 8 chr1 25340532 25340671 -217323682 - MIR SINE MIR -48 160 15 1129 201 13 66 chr1 25340714 25341032 -217323321 + L1MD2 LINE L1 6052 6352 -7 763 254 6 0 chr1 25341278 25341447 -217322906 - MER63A DNA MER1_type 0 210 41 237 283 54 22 chr1 25341790 25341882 -217322471 + MIR3 SINE MIR 82 176 -32 328 238 48 12 chr1 25341948 25342032 -217322321 + MIR SINE MIR 108 194 -68 2061 151 3 0 chr1 25342374 25342672 -217321681 + AluJb SINE Alu 1 299 -13 321 91 0 0 chr1 25342879 25342923 -217321430 - AluSq SINE Alu -257 44 1 1850 124 87 0 chr1 25342924 25343199 -217321154 - AluSx SINE Alu -13 299 1 1173 128 31 0 chr1 25343199 25343394 -217320959 - L1MB3 LINE L1 -354 5829 5629 225 224 0 0 chr1 25343397 25343455 -217320898 + MLT1J1 LTR MaLR 374 431 -15 551 283 6 57 chr1 25343499 25343676 -217320677 - MIR SINE MIR -14 248 81 494 267 51 97 chr1 25343678 25343989 -217320364 - L2 LINE L2 -94 3178 2882 201 243 68 68 chr1 25343975 25344049 -217320304 - MIR SINE MIR -187 75 2 * 211 234 43 0 chr1 25344094 25344141 -217320212 + MIR3 SINE MIR 159 207 -1 2325 102 0 3 chr1 25344451 25344746 -217319607 + AluSx SINE Alu 1 294 -18 1760 144 11 39 chr1 25345032 25345316 -217319037 + AluSx SINE Alu 2 277 -35 787 139 16 8 chr1 25345420 25345542 -217318811 - AluSq/x SINE Alu -188 124 2 767 246 105 13 chr1 25346053 25346281 -217318072 - MIR SINE MIR -7 255 7 622 223 0 105 chr1 25346446 25346609 -217317744 + MER63A DNA MER1_type 5 139 -1549 933 265 0 58 chr1 25346609 25346922 -217317431 + AluY SINE Alu 1 295 -6 622 223 0 105 chr1 25346922 25346987 -217317366 + MER63A DNA MER1_type 139 209 -1 199 279 88 83 chr1 25347199 25347403 -217316950 + L2 LINE L2 2852 3056 -216 632 167 18 0 chr1 25347433 25347547 -217316806 - MSTD LTR MaLR 0 396 281 651 261 4 50 chr1 25347788 25348048 -217316305 + AluSx SINE Alu 42 289 -23 198 0 0 0 chr1 25348048 25348070 -217316283 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 458 246 7 36 chr1 25348137 25348275 -217316078 - MER117 DNA MER1_type -38 159 26 706 220 225 14 chr1 25348279 25348694 -217315659 - MLT1H1 LTR MaLR -24 531 8 633 286 71 50 chr1 25349050 25349431 -217314922 - L2 LINE L2 -2 3311 2923 681 162 0 8 chr1 25349440 25349557 -217314796 - AluJ SINE Alu -11 301 186 943 71 0 0 chr1 25349563 25349675 -217314678 - AluJ SINE Alu -180 132 21 242 253 67 0 chr1 25349780 25349855 -217314498 - L2 LINE L2 -595 2719 2640 1188 168 0 0 chr1 25349993 25350166 -217314187 + AluJo SINE Alu 7 179 -133 270 81 0 0 chr1 25350270 25350307 -217314046 + (GA)n Simple_repeat Simple_repeat 1 37 0 189 243 14 68 chr1 25350510 25350584 -217313769 - L2 LINE L2 -817 2497 2428 444 250 61 71 chr1 25350871 25351067 -217313286 - MLT1K LTR MaLR -339 249 56 716 313 63 14 chr1 25351105 25351389 -217312964 - L3 LINE CR1 -25 1552 1255 208 311 0 27 chr1 25351446 25351520 -217312833 + MIR SINE MIR 23 94 -114 509 301 26 7 chr1 25351524 25351677 -217312676 - MIR SINE MIR -97 165 10 334 213 0 0 chr1 25351669 25351730 -217312623 + MIR SINE MIR 79 139 -69 * 763 209 5 78 chr1 25351736 25351759 -217312594 - MER5A DNA MER1_type -12 177 154 1744 126 4 4 chr1 25351759 25352006 -217312347 - AluJb SINE Alu -53 259 13 763 209 5 78 chr1 25352006 25352173 -217312180 - MER5A DNA MER1_type -35 154 1 2028 105 54 17 chr1 25352259 25352553 -217311800 - AluSx SINE Alu -7 305 1 276 30 0 0 chr1 25352580 25352613 -217311740 + (TG)n Simple_repeat Simple_repeat 1 33 0 228 35 0 0 chr1 25352612 25352641 -217311712 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 1957 144 37 42 chr1 25352737 25353118 -217311235 - Tigger2a DNA MER2_type -51 383 5 871 176 57 10 chr1 25353121 25353314 -217311039 + L1MB7 LINE L1 5964 6165 -19 187 189 0 27 chr1 25353349 25353386 -217310967 - MIR SINE MIR -189 73 38 1015 154 0 12 chr1 25353939 25354101 -217310252 + AluJo SINE Alu 13 172 -140 434 259 244 0 chr1 25354299 25354496 -217309857 - MIR SINE MIR -6 256 12 276 271 47 19 chr1 25354543 25354650 -217309703 + MIR SINE MIR 38 147 -61 2366 78 3 3 chr1 25356396 25356691 -217307662 + AluSg SINE Alu 1 295 -15 2277 97 3 3 chr1 25357068 25357367 -217306986 + AluSx SINE Alu 1 299 -13 590 292 74 25 chr1 25358765 25358967 -217305386 - MIR SINE MIR -4 258 47 291 114 0 0 chr1 25359448 25359492 -217304861 + (TA)n Simple_repeat Simple_repeat 2 45 0 266 288 138 0 chr1 25359492 25359590 -217304763 + MIR SINE MIR 152 262 0 1134 176 73 11 chr1 25359837 25360098 -217304255 - L1ME2 LINE L1 -19 6145 5869 623 168 75 0 chr1 25360672 25360779 -217303574 - FLAM_C SINE Alu -27 116 2 435 243 88 14 chr1 25361122 25361270 -217303083 + MER103 DNA DNA 6 164 -2 306 207 156 43 chr1 25361989 25362110 -217302243 + MIR SINE MIR 10 121 -87 698 269 16 16 chr1 25362932 25363118 -217301235 - MIR3 SINE MIR -7 201 16 832 204 98 27 chr1 25363134 25363359 -217300994 - MIR SINE MIR -10 252 12 766 276 74 21 chr1 25364022 25364267 -217300086 - MIR SINE MIR -1 261 5 476 313 163 13 chr1 25364573 25364800 -217299553 + MIR SINE MIR 2 262 0 186 43 0 0 chr1 25365396 25365419 -217298934 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 437 295 133 0 chr1 25366161 25366334 -217298019 + MIR SINE MIR 35 230 -32 521 302 79 8 chr1 25366454 25366750 -217297603 - L1ME2 LINE L1 -337 5784 5445 2705 49 3 0 chr1 25367011 25367316 -217297037 + AluSp SINE Alu 1 306 -7 195 331 60 60 chr1 25367561 25367694 -217296659 + MIR SINE MIR 109 241 -21 217 150 0 0 chr1 25368088 25368128 -217296225 - L2 LINE L2 -1 3312 3273 443 265 75 45 chr1 25368336 25368500 -217295853 + MIR SINE MIR 30 203 -59 428 106 12 0 chr1 25368500 25368585 -217295768 + (TA)n Simple_repeat Simple_repeat 1 86 0 443 265 75 45 chr1 25368585 25368620 -217295733 + MIR SINE MIR 203 235 -27 242 228 63 25 chr1 25368649 25368728 -217295625 - MIR SINE MIR -64 144 63 209 276 69 0 chr1 25369341 25369399 -217294954 - MER91B DNA MER1_type -128 62 1 2041 103 4 0 chr1 25369858 25370120 -217294233 - AluSq SINE Alu -50 263 1 222 304 109 0 chr1 25370126 25370218 -217294135 + MIR SINE MIR 86 187 -75 701 219 79 14 chr1 25370238 25370448 -217293905 - MIR SINE MIR -8 254 33 678 326 25 17 chr1 25371307 25371543 -217292810 + MIR SINE MIR 13 250 -12 508 272 105 62 chr1 25371523 25371780 -217292573 - L2 LINE L2 -22 3291 3024 * 344 336 26 9 chr1 25372483 25372599 -217291754 + L2 LINE L2 3188 3305 -8 346 193 53 44 chr1 25372630 25372744 -217291609 + MIR SINE MIR 27 141 -121 557 313 71 21 chr1 25374489 25374729 -217289624 + MIR SINE MIR 5 256 -6 566 207 152 0 chr1 25375258 25375403 -217288950 + MIR SINE MIR 19 185 -77 252 304 0 0 chr1 25376019 25376113 -217288240 + MIR SINE MIR 44 137 -71 26 0 0 0 chr1 25377043 25377069 -217287284 + GC_rich Low_complexity Low_complexity 1 26 0 353 324 57 23 chr1 25377239 25377415 -217286938 - MIR SINE MIR 0 262 81 319 296 21 35 chr1 25377489 25377631 -217286722 + L1ME4a LINE L1 5966 6105 -16 812 166 118 0 chr1 25377685 25377713 -217286640 + MER5A DNA MER1_type 1 24 -165 180 0 0 0 chr1 25377713 25377733 -217286620 + (CAT)n Simple_repeat Simple_repeat 1 20 0 812 166 118 0 chr1 25377733 25377873 -217286480 + MER5A DNA MER1_type 24 189 0 416 269 67 8 chr1 25377982 25378116 -217286237 + MIR SINE MIR 47 188 -74 249 262 136 19 chr1 25378402 25378505 -217285848 + L2 LINE L2 3195 3309 -4 250 224 71 12 chr1 25378940 25379025 -217285328 - MIR SINE MIR 0 262 173 560 283 56 28 chr1 25379113 25379293 -217285060 - MIR SINE MIR -76 186 2 371 277 43 77 chr1 25380383 25380618 -217283735 + MIR SINE MIR 28 254 -8 350 330 0 0 chr1 25380793 25380896 -217283457 + CT-rich Low_complexity Low_complexity 3 105 0 443 221 133 33 chr1 25380951 25381132 -217283221 + L2 LINE L2 3113 3311 -2 289 213 199 22 chr1 25381256 25381392 -217282961 + MIR SINE MIR 38 197 -65 253 384 9 0 chr1 25381547 25381659 -217282694 - MIR SINE MIR -1 261 149 * 532 246 73 85 chr1 25381649 25381909 -217282444 + L2 LINE L2 3057 3313 0 254 238 127 0 chr1 25381887 25381950 -217282403 - MIR SINE MIR -118 144 74 * 636 323 30 4 chr1 25382641 25382873 -217281480 + MIR SINE MIR 7 244 -18 228 259 0 0 chr1 25383084 25383142 -217281211 + MIR SINE MIR 37 94 -114 292 328 53 0 chr1 25383196 25383327 -217281026 - MIR SINE MIR 0 262 125 295 343 22 8 chr1 25383985 25384119 -217280234 + MIR SINE MIR 48 183 -79 758 127 24 160 chr1 25384393 25384547 -217279806 + MER5A DNA MER1_type 1 120 -69 1076 187 0 0 chr1 25384547 25384761 -217279592 - L1MA6 LINE L1 -9 6291 6078 758 127 24 160 chr1 25384761 25384819 -217279534 + MER5A DNA MER1_type 120 184 -5 735 235 59 15 chr1 25384849 25385053 -217279300 + MIR SINE MIR 50 262 0 198 200 0 22 chr1 25385131 25385176 -217279177 + L2 LINE L2 3014 3057 -215 404 148 115 25 chr1 25386161 25386283 -217278070 + L2 LINE L2 2906 3038 -234 430 344 0 0 chr1 25386924 25387087 -217277266 - MER117 DNA MER1_type -34 163 1 637 283 132 0 chr1 25387996 25388208 -217276145 - MIR SINE MIR -11 251 12 462 263 75 0 chr1 25388217 25388350 -217276003 + MIR SINE MIR 106 248 -14 460 286 54 22 chr1 25388366 25388551 -217275802 - MIR SINE MIR -64 198 8 2330 84 59 11 chr1 25388648 25389006 -217275347 - THE1C LTR MaLR 0 375 1 787 214 167 0 chr1 25389234 25389468 -217274885 - ORSL DNA AcHobo 0 275 3 489 17 0 0 chr1 25389477 25389535 -217274818 + (CA)n Simple_repeat Simple_repeat 2 59 0 1397 206 0 18 chr1 25389938 25390220 -217274133 + AluSx SINE Alu 23 299 -13 1418 254 44 106 chr1 25390403 25391085 -217273268 + MLT1E2-int LTR MaLR 692 1331 -40 2239 80 4 0 chr1 25391128 25391403 -217272950 + AluSp SINE Alu 29 304 -9 388 209 82 73 chr1 25391441 25391551 -217272802 + MLT1E2 LTR MaLR 3 113 -513 579 260 61 6 chr1 25391551 25391732 -217272621 + MSTD LTR MaLR 1 191 -205 1834 148 54 3 chr1 25391733 25392030 -217272323 + AluSx SINE Alu 1 312 0 272 104 42 0 chr1 25392039 25392087 -217272266 + GA-rich Low_complexity Low_complexity 4 53 0 1253 50 11 11 chr1 25392087 25392267 -217272086 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1134 153 5 11 chr1 25392395 25392585 -217271768 + MSTD LTR MaLR 208 396 0 * 1507 214 49 49 chr1 25392585 25393056 -217271297 + MLT1E2 LTR MaLR 109 624 0 352 355 26 19 chr1 25393137 25393292 -217271061 + MIR SINE MIR 86 241 -21 230 223 140 76 chr1 25393716 25393873 -217270480 - L1ME4a LINE L1 -18 6103 5937 850 228 14 38 chr1 25393874 25394040 -217270313 - MER58A DNA MER1_type -2196 224 63 1907 157 17 10 chr1 25394040 25394340 -217270013 + AluJb SINE Alu 1 302 -10 850 228 14 38 chr1 25394340 25394384 -217269969 - MER58A DNA MER1_type -2357 63 19 1047 236 75 13 chr1 25394518 25394823 -217269530 - MER33 DNA MER1_type 0 324 1 1365 165 13 25 chr1 25395066 25395302 -217269051 + AluJo SINE Alu 48 280 -32 404 277 215 11 chr1 25395464 25395641 -217268712 + MIR SINE MIR 7 219 -43 1100 249 138 2 chr1 25396506 25396935 -217267418 + LTR16C LTR ERVL 5 491 0 448 250 18 9 chr1 25398331 25398443 -217265910 + MIR SINE MIR 26 138 -70 222 310 14 0 chr1 25399427 25399498 -217264855 - MIR SINE MIR -56 152 81 209 105 0 26 chr1 25399651 25399689 -217264664 + (CA)n Simple_repeat Simple_repeat 1 37 0 2610 58 0 7 chr1 25399953 25400261 -217264092 - AluSq SINE Alu -7 306 1 244 172 11 20 chr1 25400966 25401035 -217263318 - MER91 DNA MER1_type 0 140 1 301 239 15 0 chr1 25401505 25401572 -217262781 - MIR SINE MIR -76 132 65 268 217 72 14 chr1 25402571 25402662 -217261691 + MIR SINE MIR 53 145 -63 635 226 84 32 chr1 25402772 25402962 -217261391 + MIR SINE MIR 6 205 -57 230 307 13 0 chr1 25402981 25403056 -217261297 + (CTA)n Simple_repeat Simple_repeat 2 77 0 2418 79 0 13 chr1 25403293 25403597 -217260756 - AluY SINE Alu -11 300 1 583 274 73 27 chr1 25403911 25404130 -217260223 + MIR SINE MIR 2 230 -32 194 239 326 0 chr1 25404150 25404242 -217260111 - MIR3 SINE MIR -51 157 36 433 294 21 42 chr1 25405295 25405438 -217258915 - MIR SINE MIR -67 195 56 462 309 73 0 chr1 25405862 25406027 -217258326 + MIR SINE MIR 11 187 -75 274 295 25 8 chr1 25406382 25406504 -217257849 + CT-rich Low_complexity Low_complexity 1 124 0 629 193 62 57 chr1 25407333 25407509 -217256844 + AluJb SINE Alu 135 311 -1 292 241 25 0 chr1 25408767 25408846 -217255507 + MIR SINE MIR 66 146 -62 358 280 88 32 chr1 25409006 25409180 -217255173 - MIR SINE MIR -62 146 3 678 217 82 45 chr1 25409234 25409478 -217254875 - MIR SINE MIR -11 251 4 336 343 30 15 chr1 25410193 25410327 -217254026 - MIR SINE MIR -75 187 52 594 262 44 44 chr1 25411247 25411506 -217252847 - MIR SINE MIR -5 257 4 512 277 51 75 chr1 25411561 25411814 -217252539 - L3 LINE CR1 -1 1576 1330 516 301 25 20 chr1 25411996 25412192 -217252161 - MIR SINE MIR -7 255 59 249 220 0 34 chr1 25412251 25412310 -217252043 + MIR SINE MIR 77 133 -75 444 299 0 0 chr1 25412532 25412639 -217251714 - MIR SINE MIR -15 247 141 393 234 131 29 chr1 25412853 25413028 -217251325 + L1ME4a LINE L1 5929 6121 0 534 250 106 6 chr1 25413488 25413648 -217250705 - MIR SINE MIR -1 261 86 412 259 184 13 chr1 25414826 25414984 -217249369 - MIR SINE MIR -12 250 66 220 246 53 0 chr1 25415683 25415740 -217248613 + MIR SINE MIR 191 250 -12 505 250 10 0 chr1 25416160 25416260 -217248093 + MIR SINE MIR 51 151 -111 268 317 67 25 chr1 25416280 25416400 -217247953 + L2 LINE L2 3145 3269 -3 288 220 23 28 chr1 25416414 25416591 -217247762 + (TGGG)n Simple_repeat Simple_repeat 3 178 0 195 294 59 0 chr1 25417255 25417323 -217247030 + MIR SINE MIR 158 229 -33 185 62 0 31 chr1 25418175 25418207 -217246146 + (TA)n Simple_repeat Simple_repeat 2 32 0 181 204 19 56 chr1 25418675 25418729 -217245624 + MIR SINE MIR 25 76 -132 574 227 97 0 chr1 25418752 25418906 -217245447 - MER63A DNA MER1_type -10 200 32 2486 88 0 0 chr1 25418937 25419243 -217245110 - AluSg SINE Alu -4 306 1 2461 73 10 0 chr1 25419282 25419583 -217244770 - AluY SINE Alu -7 304 1 191 163 61 41 chr1 25419914 25419963 -217244390 + MIR3 SINE MIR 159 208 0 827 176 39 44 chr1 25419992 25420197 -217244156 + MER96B DNA MER1_type? 21 224 -193 780 186 36 12 chr1 25420443 25420610 -217243743 + MER5B DNA MER1_type 7 177 -1 207 114 0 0 chr1 25421146 25421181 -217243172 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 284 333 101 0 chr1 25421735 25421873 -217242480 - MIR3 SINE MIR -21 187 36 200 289 207 0 chr1 25423048 25423169 -217241184 + MIR3 SINE MIR 14 159 -49 2123 128 10 13 chr1 25423207 25423512 -217240841 + AluSx SINE Alu 1 304 -8 389 225 39 62 chr1 25424254 25424383 -217239970 + MIR SINE MIR 120 245 -17 712 247 37 11 chr1 25424410 25424600 -217239753 + MER117 DNA MER1_type 1 195 -2 582 227 214 0 chr1 25424810 25424964 -217239389 + MIR3 SINE MIR 22 208 0 316 347 62 0 chr1 25425259 25425403 -217238950 - MIR3 SINE MIR -23 185 33 493 367 48 20 chr1 25425415 25425663 -217238690 + MIR SINE MIR 8 262 0 585 281 31 12 chr1 25426507 25426667 -217237686 + MIR SINE MIR 23 185 -77 227 188 0 0 chr1 25426829 25426889 -217237464 - L2 LINE L2 -296 2976 2917 231 261 31 15 chr1 25427314 25427379 -217236974 + MIR SINE MIR 8 73 -189 260 293 96 54 chr1 25428766 25428933 -217235420 - MIR SINE MIR -66 196 23 184 355 0 0 chr1 25429772 25429848 -217234505 - MIR SINE MIR -58 150 75 391 252 101 22 chr1 25429902 25430041 -217234312 + MER103 DNA DNA 17 166 0 2180 117 17 0 chr1 25430567 25430858 -217233495 - AluSx SINE Alu -16 296 1 403 292 175 7 chr1 25430883 25431037 -217233316 - MIR SINE MIR -70 192 13 2296 124 0 0 chr1 25431743 25432049 -217232304 - AluSx SINE Alu -6 306 1 567 224 83 47 chr1 25432051 25432243 -217232110 - MIR SINE MIR -59 203 5 264 310 171 19 chr1 25432397 25432555 -217231798 + MIR SINE MIR 78 259 -3 206 205 26 0 chr1 25432546 25432585 -217231768 - L2 LINE L2 -2 3270 3231 * 408 312 32 8 chr1 25433077 25433202 -217231151 - MIR SINE MIR -66 196 69 311 317 148 7 chr1 25433201 25433343 -217231010 + MIR SINE MIR 90 251 -11 * 1729 166 6 54 chr1 25433362 25433544 -217230809 - AluJo SINE Alu -14 298 136 2564 58 0 0 chr1 25433544 25433835 -217230518 - AluY SINE Alu -20 291 1 1729 166 6 54 chr1 25433835 25433965 -217230388 - AluJo SINE Alu -176 136 1 303 323 12 12 chr1 25434175 25434342 -217230011 + L1ME LINE L1 5694 5860 -261 2192 126 0 10 chr1 25434350 25434652 -217229701 + AluSx SINE Alu 1 299 -13 190 283 113 38 chr1 25434905 25434940 -217229413 + MIR SINE MIR 36 67 -195 2321 94 0 0 chr1 25434940 25435256 -217229097 + AluSx SINE Alu 1 316 0 190 283 113 38 chr1 25435256 25435325 -217229028 + MIR SINE MIR 67 149 -113 225 284 159 0 chr1 25435371 25435459 -217228894 + MIR SINE MIR 154 255 -7 485 267 53 8 chr1 25436077 25436208 -217228145 + MIR SINE MIR 13 149 -113 362 304 39 0 chr1 25437114 25437216 -217227137 + MIR3 SINE MIR 50 155 -53 2587 67 0 3 chr1 25437291 25437603 -217226750 - AluY SINE Alu 0 311 1 2055 146 0 3 chr1 25437667 25437968 -217226385 - AluJb SINE Alu -10 302 3 2286 121 0 0 chr1 25439068 25439365 -217224988 - AluSx SINE Alu -15 297 1 244 305 11 53 chr1 25439612 25439707 -217224646 - L2 LINE L2 0 3272 3182 638 314 128 44 chr1 25439902 25440023 -217224330 + L2 LINE L2 2597 2707 -606 2048 99 42 28 chr1 25440023 25440307 -217224046 + AluSg SINE Alu 1 288 -22 638 314 128 44 chr1 25440307 25440758 -217223595 + L2 LINE L2 2707 3208 -105 524 263 58 13 chr1 25440895 25441051 -217223302 + MIR SINE MIR 79 241 -21 180 0 0 0 chr1 25441054 25441074 -217223279 + (TCC)n Simple_repeat Simple_repeat 2 21 0 1170 201 33 15 chr1 25441123 25441396 -217222957 + MER33 DNA MER1_type 6 283 -41 2254 79 32 0 chr1 25441398 25441678 -217222675 + AluY SINE Alu 1 289 -22 21 36 0 0 chr1 25441721 25441749 -217222604 + AT_rich Low_complexity Low_complexity 1 28 0 756 286 55 8 chr1 25442004 25442242 -217222111 - MIR SINE MIR -12 250 2 219 188 0 21 chr1 25442379 25442427 -217221926 - MIR SINE MIR -111 151 105 386 221 236 16 chr1 25444062 25444189 -217220164 - MIR SINE MIR -74 188 34 208 276 113 0 chr1 25445482 25445586 -217218767 - MIR SINE MIR -75 133 34 1971 163 3 3 chr1 25445951 25446257 -217218096 - AluJo SINE Alu -6 306 1 275 347 91 15 chr1 25447095 25447294 -217217059 - MIR SINE MIR -40 222 9 374 291 97 0 chr1 25447831 25447965 -217216388 - MIR SINE MIR -70 192 46 * 402 247 117 53 chr1 25447956 25448138 -217216215 - MIR SINE MIR -45 217 7 562 194 328 0 chr1 25448577 25448763 -217215590 - MIR SINE MIR -13 249 3 365 269 221 0 chr1 25448804 25448949 -217215404 + MIR3 SINE MIR 29 205 -3 731 186 58 6 chr1 25449148 25449304 -217215049 - MER53 DNA DNA -23 166 3 372 276 78 0 chr1 25449518 25449634 -217214719 - MER63 DNA MER1_type -311 751 1 231 229 0 0 chr1 25449981 25450029 -217214324 + MIR SINE MIR 176 223 -39 219 69 0 0 chr1 25450041 25450070 -217214283 + (CACCAT)n Simple_repeat Simple_repeat 1 29 0 199 375 16 0 chr1 25450203 25450267 -217214086 - L2 LINE L2 -8 3264 3200 631 287 78 10 chr1 25450550 25450769 -217213584 + MIR SINE MIR 17 240 -22 295 317 83 14 chr1 25451167 25451312 -217213041 - MIR3 SINE MIR -6 202 48 434 279 57 0 chr1 25451888 25452010 -217212343 - MIR3 SINE MIR -21 187 59 228 224 0 0 chr1 25452516 25452565 -217211788 - L2 LINE L2 -3 3269 3221 508 230 137 12 chr1 25452568 25452729 -217211624 + MIR SINE MIR 82 262 0 360 331 76 0 chr1 25452965 25453137 -217211216 - MIR3 SINE MIR -3 205 21 2014 115 21 21 chr1 25453477 25453763 -217210590 - AluSx SINE Alu -26 286 1 1788 163 10 13 chr1 25453844 25454022 -217210331 - AluJo SINE Alu -12 300 122 198 0 0 0 chr1 25454022 25454044 -217210309 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 1788 163 10 13 chr1 25454044 25454166 -217210187 - AluJo SINE Alu -190 122 1 2099 171 37 17 chr1 25455427 25455837 -217208516 + LTR52 LTR ERVL 1 418 -3 413 316 47 18 chr1 25456051 25456222 -217208131 - MIR SINE MIR -84 178 3 5132 241 56 17 chr1 25456755 25458449 -217205904 + L1ME3A LINE L1 63 1822 -4574 2584 59 0 0 chr1 25458473 25458776 -217205577 - AluY SINE Alu -8 303 1 21 57 0 0 chr1 25458779 25458814 -217205539 + AT_rich Low_complexity Low_complexity 1 35 0 235 73 171 0 chr1 25458826 25458867 -217205486 + Alu SINE Alu 1 48 -255 1186 139 0 0 chr1 25458875 25459040 -217205313 + AluSg/x SINE Alu 131 295 -17 1060 176 10 10 chr1 25459046 25459245 -217205108 + L1ME3A LINE L1 1868 2066 -4330 238 111 83 0 chr1 25459248 25459284 -217205069 - MER58A DNA MER1_type -1 223 185 475 29 14 29 chr1 25459286 25459356 -217204997 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1019 138 13 13 chr1 25459368 25459520 -217204833 - FRAM SINE Alu -26 150 1 1007 226 0 0 chr1 25459520 25459706 -217204647 - MER58A DNA MER1_type -33 191 6 1898 237 53 6 chr1 25459711 25460410 -217203943 + L1ME3A LINE L1 2057 2740 -3475 991 253 51 22 chr1 25460384 25460740 -217203613 + L1ME3A LINE L1 3626 3991 -2224 * 2377 209 55 16 chr1 25460734 25461293 -217203060 - L1ME1 LINE L1 -253 5913 5333 * 3216 233 73 62 chr1 25461290 25462039 -217202314 + L1ME3A LINE L1 3970 4710 -1521 503 140 9 56 chr1 25462039 25462146 -217202207 + L1MA5 LINE L1 6199 6300 0 3216 233 73 62 chr1 25462146 25462914 -217201439 + L1ME3A LINE L1 4710 5510 -721 2429 186 63 49 chr1 25462918 25463586 -217200767 + L1ME3A LINE L1 5563 6239 0 1984 126 30 10 chr1 25464730 25465031 -217199322 - AluSq SINE Alu -6 307 1 984 217 155 10 chr1 25465036 25465351 -217199002 - L1MB8 LINE L1 0 6247 5885 629 132 270 6 chr1 25465346 25465505 -217198848 - L1MB8 LINE L1 -639 5594 5394 * 1735 147 56 0 chr1 25465535 25465820 -217198533 + AluJo SINE Alu 12 312 0 8408 209 60 28 chr1 25465851 25468048 -217196305 - L1MB8 LINE L1 -827 5388 3105 1989 91 4 4 chr1 25468048 25468301 -217196052 - AluSq SINE Alu -59 254 2 8408 209 60 28 chr1 25468301 25468530 -217195823 - L1MB8 LINE L1 -3110 3105 2885 4883 235 64 78 chr1 25468536 25469891 -217194462 - L1MB8 LINE L1 -3467 2748 1376 779 188 17 33 chr1 25469891 25470072 -217194281 - L1MB3 LINE L1 -2 6181 6004 4883 235 64 78 chr1 25470072 25470488 -217193865 - L1MB8 LINE L1 -4839 1376 956 2171 96 17 0 chr1 25470488 25470780 -217193573 - AluSg1 SINE Alu -12 297 1 4883 235 64 78 chr1 25470780 25471745 -217192608 - L1MB8 LINE L1 -5259 956 93 1810 161 29 0 chr1 25472130 25472410 -217191943 + AluJb SINE Alu 1 288 -24 4381 168 12 4 chr1 25472566 25473292 -217191061 + MER44D DNA MER2_type 1 604 -1 2179 100 0 4 chr1 25473373 25473683 -217190670 + AluSc SINE Alu 1 309 0 399 235 50 8 chr1 25473961 25474080 -217190273 + MIR SINE MIR 47 170 -92 604 247 134 26 chr1 25474179 25474410 -217189943 - MIR SINE MIR 0 262 7 1692 173 11 11 chr1 25474496 25474779 -217189574 - AluJo SINE Alu -24 288 6 343 300 7 21 chr1 25474936 25475076 -217189277 - L3 LINE CR1 -167 1410 1273 475 208 75 0 chr1 25475106 25475212 -217189141 - MER112 DNA MER1_type -146 114 1 490 199 91 34 chr1 25475395 25475571 -217188782 + L2 LINE L2 3014 3199 -114 766 156 8 0 chr1 25475622 25475744 -217188609 + FLAM_C SINE Alu 2 124 -19 180 0 0 0 chr1 25475801 25475821 -217188532 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 320 347 16 0 chr1 25476254 25476378 -217187975 - MIR3 SINE MIR -49 159 34 2357 77 0 7 chr1 25477092 25477390 -217186963 - AluSx SINE Alu -16 296 1 187 309 108 44 chr1 25477509 25477576 -217186777 + L2 LINE L2 2715 2776 -538 2123 94 30 3 chr1 25477576 25477874 -217186479 - AluJb SINE Alu -6 306 1 187 309 108 44 chr1 25477874 25478010 -217186343 + L2 LINE L2 2776 2931 -383 239 280 0 27 chr1 25480909 25480984 -217183369 + L2 LINE L2 3200 3272 0 438 290 36 0 chr1 25481079 25481217 -217183136 - MIR SINE MIR -52 210 68 1521 157 92 0 chr1 25481404 25481665 -217182688 + AluJo SINE Alu 12 296 -16 269 194 90 0 chr1 25481742 25481809 -217182544 - MIR SINE MIR -109 153 81 2187 108 20 0 chr1 25482852 25483147 -217181206 + AluSc SINE Alu 1 301 -8 1863 146 3 17 chr1 25483264 25483559 -217180794 + AluJo SINE Alu 1 291 -21 813 311 34 6 chr1 25483655 25483976 -217180377 - L1ME4a LINE L1 -191 5930 5601 1366 149 39 140 chr1 25484080 25484416 -217179937 + AluJb SINE Alu 1 302 0 414 295 8 8 chr1 25484439 25484568 -217179785 - MIR3 SINE MIR -23 185 57 331 330 0 0 chr1 25484601 25484707 -217179646 - MIR SINE MIR 0 262 157 317 246 119 24 chr1 25484711 25484837 -217179516 + MIR SINE MIR 123 260 -2 * 510 277 20 7 chr1 25484835 25484983 -217179370 - MIR SINE MIR -105 157 8 537 238 14 28 chr1 25485339 25485472 -217178881 + MIR3 SINE MIR 29 159 -49 225 314 0 0 chr1 25485472 25485542 -217178811 - MER5B DNA MER1_type -3 175 106 684 246 38 11 chr1 25485919 25486102 -217178251 - L1ME3A LINE L1 -7 6163 5976 1064 190 99 74 chr1 25486368 25486418 -217177935 - MER74B LTR ERVL -67 555 508 2029 51 47 8 chr1 25486418 25486675 -217177678 + AluY SINE Alu 16 282 -29 1064 190 99 74 chr1 25486675 25487069 -217177284 - MER74B LTR ERVL -114 508 2 261 296 130 12 chr1 25487278 25487440 -217176913 + MIR SINE MIR 47 227 -35 252 291 0 55 chr1 25487595 25487705 -217176648 - MLT1K LTR MaLR -4 584 481 1373 64 137 20 chr1 25488270 25488474 -217175879 - MER30 DNA MER1_type 0 230 3 227 254 45 15 chr1 25488587 25488654 -217175699 + MIR SINE MIR 5 73 -189 314 174 65 2 chr1 25488655 25488740 -217175613 - AluJ/FRAM SINE Alu -1 301 221 561 205 24 8 chr1 25489069 25489196 -217175157 - MIR SINE MIR -76 186 58 278 141 320 0 chr1 25489261 25489339 -217175014 - MER94 DNA DNA 0 134 32 1741 135 0 0 chr1 25489339 25489583 -217174770 - AluSx SINE Alu -12 300 57 3590 122 43 46 chr1 25490843 25491018 -217173335 + MER39B LTR ERV1 1 175 -478 1728 121 29 46 chr1 25491018 25491299 -217173054 + AluJb SINE Alu 11 286 -26 420 20 0 0 chr1 25491299 25491348 -217173005 + (GA)n Simple_repeat Simple_repeat 2 50 0 3590 122 43 46 chr1 25491348 25491826 -217172527 + MER39B LTR ERV1 173 653 0 334 167 0 0 chr1 25492118 25492172 -217172181 - MER116 DNA Mariner -1 79 26 1577 96 0 10 chr1 25492172 25492380 -217171973 + AluSx SINE Alu 1 206 -106 620 211 94 0 chr1 25492432 25492603 -217171750 - Charlie2a DNA MER1_type -169 2693 2507 * 1173 220 33 23 chr1 25492596 25492896 -217171457 - MER93b LTR ERV1 -59 314 12 2009 197 124 98 chr1 25492903 25493277 -217171076 - Charlie2a DNA MER1_type -400 2462 2099 2300 104 3 25 chr1 25493277 25493594 -217170759 - AluSq SINE Alu -3 310 1 2009 197 124 98 chr1 25493594 25494129 -217170224 - Charlie2a DNA MER1_type -763 2099 1529 725 264 92 21 chr1 25494128 25494412 -217169941 - Charlie2a DNA MER1_type -2388 474 171 * 186 259 19 0 chr1 25494911 25494965 -217169388 + L2 LINE L2 3008 3062 -251 2282 84 11 0 chr1 25495186 25495471 -217168882 - AluSp SINE Alu -25 288 1 205 254 32 0 chr1 25495548 25495611 -217168742 - MIR SINE MIR 0 262 198 1110 195 85 0 chr1 25495614 25495850 -217168503 + MIR SINE MIR 1 256 -6 279 150 0 0 chr1 25496032 25496072 -217168281 - MER103 DNA DNA -77 89 50 397 310 60 23 chr1 25496085 25496301 -217168052 - MIR SINE MIR -25 237 14 3064 198 31 38 chr1 25496826 25498381 -217165972 + L1ME4a LINE L1 2049 5293 -1089 751 232 26 55 chr1 25498399 25498671 -217165682 - L1MDa LINE L1 -4071 2471 2208 359 183 49 0 chr1 25498667 25498749 -217165604 + L1ME4a LINE L1 5330 5415 -967 * 263 261 270 0 chr1 25498747 25498862 -217165491 - L1MDa LINE L1 -5919 621 476 * 2117 143 28 25 chr1 25498862 25499218 -217165135 - MLT1A1 LTR MaLR 0 365 9 1727 167 20 68 chr1 25499233 25499531 -217164822 - L1MDa LINE L1 -6145 395 119 2284 93 0 32 chr1 25499531 25499843 -217164510 - AluSq SINE Alu -11 302 1 1727 167 20 68 chr1 25499843 25499940 -217164413 - L1MDa LINE L1 -6421 119 19 2417 59 0 3 chr1 25500014 25500303 -217164050 + AluY SINE Alu 1 288 -23 182 196 22 0 chr1 25501361 25501407 -217162946 - MIR SINE MIR -126 82 36 851 281 44 35 chr1 25501933 25502056 -217162297 + L1ME4a LINE L1 5839 5959 -398 941 165 41 16 chr1 25502056 25502250 -217162103 + L1PA16 LINE L1 5965 6163 -3 851 281 44 35 chr1 25502250 25502560 -217161793 + L1ME4a LINE L1 5959 6276 -81 21 36 0 0 chr1 25502622 25502650 -217161703 + AT_rich Low_complexity Low_complexity 1 28 0 923 276 60 3 chr1 25503831 25504132 -217160221 + LTR16C LTR ERVL 173 490 -1 217 274 75 55 chr1 25504769 25504915 -217159438 + MER5A DNA MER1_type 41 189 0 790 236 31 0 chr1 25505413 25505608 -217158745 - MIR SINE MIR -36 226 26 1536 170 3 70 chr1 25505715 25506027 -217158326 + AluJo SINE Alu 3 293 -19 468 216 11 0 chr1 25506053 25506141 -217158212 - AluS SINE Alu -217 95 7 715 232 76 16 chr1 25506492 25506677 -217157676 - MER117 DNA MER1_type -1 196 1 437 174 0 70 chr1 25507426 25507512 -217156841 + MER63 DNA MER1_type 42 747 -89 343 217 58 80 chr1 25507572 25507710 -217156643 - MIR3 SINE MIR -54 154 20 465 284 135 11 chr1 25507812 25508010 -217156343 + MIR SINE MIR 19 245 -17 293 250 60 36 chr1 25508448 25508532 -217155821 + MER5B DNA MER1_type 1 86 -92 24 0 0 0 chr1 25508882 25508906 -217155447 + AT_rich Low_complexity Low_complexity 1 24 0 183 250 181 0 chr1 25508915 25508987 -217155366 - L3 LINE CR1 -908 669 585 739 328 92 35 chr1 25509027 25509114 -217155239 - L2 LINE L2 -27 3286 3205 342 0 0 0 chr1 25509114 25509152 -217155201 + (TG)n Simple_repeat Simple_repeat 2 39 0 739 328 92 35 chr1 25509152 25509303 -217155050 - L2 LINE L2 -108 3205 3064 4726 72 10 3 chr1 25509303 25509925 -217154428 - L1PA11 LINE L1 -2 6172 5547 739 328 92 35 chr1 25509925 25510170 -217154183 - L2 LINE L2 -249 3064 2779 284 275 56 63 chr1 25510160 25510302 -217154051 - MER5B DNA MER1_type -36 142 2 * 303 319 44 0 chr1 25510360 25510473 -217153880 + L1MC4 LINE L1 7924 8041 -1 187 319 0 0 chr1 25510485 25510532 -217153821 - MER5B DNA MER1_type -130 48 2 712 270 56 0 chr1 25510782 25510960 -217153393 - MER91A DNA MER1_type -1 195 8 264 247 200 12 chr1 25510975 25511060 -217153293 - L2 LINE L2 -1 3271 3171 2470 229 111 6 chr1 25511648 25512321 -217152032 + L1ME3A LINE L1 5417 6160 -10 22 94 0 0 chr1 25512322 25512386 -217151967 + AT_rich Low_complexity Low_complexity 1 64 0 1345 235 53 16 chr1 25512854 25513173 -217151180 + L1ME3A LINE L1 5518 5848 -322 446 312 118 16 chr1 25513599 25513785 -217150568 - MIR SINE MIR -25 237 33 253 189 108 40 chr1 25514062 25514136 -217150217 + MIR SINE MIR 72 150 -112 277 217 0 0 chr1 25514284 25514330 -217150023 - L2 LINE L2 -8 3264 3219 1733 172 0 25 chr1 25514458 25514772 -217149581 + AluJb SINE Alu 1 306 -6 397 279 11 15 chr1 25515345 25515538 -217148815 + MIR SINE MIR 1 262 0 475 256 15 23 chr1 25515563 25515696 -217148657 - MIR3 SINE MIR -62 146 15 1719 98 105 51 chr1 25515750 25516046 -217148307 - AluSx SINE Alu 0 312 1 227 284 28 78 chr1 25516718 25516859 -217147494 - L2 LINE L2 -86 3227 3094 862 191 12 0 chr1 25517069 25517237 -217147116 - FRAM SINE Alu -8 168 1 1983 163 20 8 chr1 25517589 25517946 -217146407 - L1MB8 LINE L1 0 6178 5818 254 306 81 6 chr1 25518396 25518556 -217145797 + Charlie7 DNA MER1_type 2435 2606 -6 782 158 0 8 chr1 25518582 25518715 -217145638 + AluJo SINE Alu 2 133 -169 1229 124 0 60 chr1 25519513 25519714 -217144639 + AluSx SINE Alu 1 189 -123 1987 127 3 0 chr1 25519795 25520106 -217144247 - AluSx SINE Alu 0 312 1 667 230 142 5 chr1 25520563 25520767 -217143586 - MIR SINE MIR -30 232 1 755 182 74 0 chr1 25521189 25521337 -217143016 + AluJo SINE Alu 136 294 -18 387 287 90 7 chr1 25522160 25522297 -217142056 + MIR SINE MIR 38 184 -61 441 236 176 6 chr1 25523139 25523304 -217141049 + L1MD3 LINE L1 7789 7981 -14 563 326 81 27 chr1 25523818 25524302 -217140051 + L1MC4a LINE L1 5376 5885 -1923 2342 80 0 0 chr1 25524304 25524603 -217139750 + AluSp SINE Alu 1 299 -14 2032 115 14 7 chr1 25524629 25524924 -217139429 + AluSq SINE Alu 1 297 -16 1883 218 37 70 chr1 25524929 25524989 -217139364 + L1ME2 LINE L1 5610 5670 -494 3113 58 0 5 chr1 25524989 25525366 -217138987 - THE1C LTR MaLR 0 375 1 1883 218 37 70 chr1 25525366 25525529 -217138824 + L1ME2 LINE L1 5670 5837 -327 2010 117 0 0 chr1 25525529 25525820 -217138533 + AluSx SINE Alu 1 291 -21 1883 218 37 70 chr1 25525820 25525860 -217138493 + L1ME2 LINE L1 5837 5877 -287 1586 81 2 229 chr1 25525860 25526257 -217138096 + AluSx SINE Alu 1 307 -5 1883 218 37 70 chr1 25526257 25526564 -217137789 + L1ME2 LINE L1 5877 6163 -1 185 250 0 11 chr1 25528399 25528487 -217135866 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 355 231 15 15 chr1 25528683 25528780 -217135573 + MIR SINE MIR 17 115 -93 802 185 20 0 chr1 25529166 25529317 -217135036 + MER90 LTR ERV1 1 154 -421 29 0 0 0 chr1 25529345 25529374 -217134979 + AT_rich Low_complexity Low_complexity 1 29 0 2047 198 36 7 chr1 25529376 25529795 -217134558 + MER90 LTR ERV1 184 614 0 602 244 68 34 chr1 25530001 25530177 -217134176 + MIR SINE MIR 9 190 -72 445 249 169 80 chr1 25530207 25530226 -217134127 + MIR SINE MIR 17 33 -229 2285 66 0 44 chr1 25530226 25530543 -217133810 + AluY SINE Alu 1 303 -8 445 249 169 80 chr1 25530543 25530748 -217133605 + MIR SINE MIR 33 261 -1 590 229 33 8 chr1 25530792 25530914 -217133439 + FLAM_A SINE Alu 1 125 -8 1666 134 3 31 chr1 25531069 25531393 -217132960 + AluJb SINE Alu 1 316 0 558 265 22 43 chr1 25533352 25533537 -217130816 - MER5A DNA MER1_type -4 185 5 265 289 202 9 chr1 25533929 25534043 -217130310 - L2 LINE L2 -8 3264 3129 1807 137 10 26 chr1 25534336 25534643 -217129710 + AluJo SINE Alu 1 302 -10 978 162 0 0 chr1 25536073 25536221 -217128132 + MER3 DNA MER1_type 1 148 -61 700 179 113 67 chr1 25536315 25536337 -217128016 + MIR SINE MIR 14 34 -228 2173 87 3 35 chr1 25536337 25536649 -217127704 + AluSp SINE Alu 1 302 -11 700 179 113 67 chr1 25536649 25536821 -217127532 + MIR SINE MIR 34 217 -45 670 288 84 9 chr1 25537046 25537176 -217127177 - MIR SINE MIR -12 250 131 1715 151 3 51 chr1 25537176 25537487 -217126866 + AluJo SINE Alu 1 296 -16 670 288 84 9 chr1 25537487 25537582 -217126771 - MIR SINE MIR -131 131 8 2341 89 0 0 chr1 25537773 25538077 -217126276 + AluSc SINE Alu 1 304 -5 23 0 0 0 chr1 25538598 25538621 -217125732 + AT_rich Low_complexity Low_complexity 1 23 0 246 226 75 62 chr1 25539053 25539103 -217125250 - L1M LINE L1 -2391 5417 5369 2237 109 0 0 chr1 25539103 25539406 -217124947 - AluSq SINE Alu -10 303 1 246 226 75 62 chr1 25539406 25539501 -217124852 - L1M LINE L1 -2439 5369 5270 365 301 127 37 chr1 25539833 25540155 -217124198 - L1 LINE L1 -1116 5030 4680 200 279 154 39 chr1 25540379 25540483 -217123870 - MIR SINE MIR -70 138 23 711 270 80 26 chr1 25540507 25540733 -217123620 - MIR SINE MIR -7 255 18 28 29 0 0 chr1 25540764 25540799 -217123554 + AT_rich Low_complexity Low_complexity 1 35 0 2197 116 3 0 chr1 25540928 25541239 -217123114 - AluSq SINE Alu 0 313 2 1528 162 9 58 chr1 25541247 25541575 -217122778 - AluJb SINE Alu 0 312 1 418 139 63 0 chr1 25541603 25541682 -217122671 - LTR50 LTR ERVL -2 793 710 939 124 0 0 chr1 25541684 25541813 -217122540 + FLAM_C SINE Alu 1 129 -14 854 192 69 54 chr1 25541822 25542077 -217122276 - LTR50 LTR ERVL -89 706 445 2264 103 0 0 chr1 25542077 25542379 -217121974 + AluSx SINE Alu 1 302 -10 854 192 69 54 chr1 25542379 25542399 -217121954 - LTR50 LTR ERVL -350 445 427 2193 101 0 0 chr1 25542708 25543004 -217121349 + AluSx SINE Alu 1 296 -16 273 244 47 35 chr1 25543318 25543404 -217120949 + HAL1 LINE L1 811 897 -1610 1462 126 0 160 chr1 25543411 25543767 -217120586 + AluJb SINE Alu 1 299 -13 2125 94 3 0 chr1 25543857 25544144 -217120209 - AluSq SINE Alu -25 288 1 182 256 179 13 chr1 25544182 25544260 -217120093 - L2 LINE L2 -21 3251 3161 2275 156 54 20 chr1 25544446 25544888 -217119465 - MER45B DNA AcHobo -21 1019 563 450 95 0 0 chr1 25544888 25544951 -217119402 + FRAM/FAM SINE Alu 19 81 -95 951 162 16 22 chr1 25544951 25545136 -217119217 + AluJo SINE Alu 114 297 -15 1919 201 74 88 chr1 25545136 25545409 -217118944 - MER45B DNA AcHobo -465 575 300 2160 94 0 16 chr1 25545409 25545718 -217118635 + AluSx SINE Alu 1 304 -8 1689 131 0 32 chr1 25545719 25546002 -217118351 - AluSx SINE Alu -38 274 1 1919 201 74 88 chr1 25546002 25546309 -217118044 - MER45B DNA AcHobo -739 301 1 1818 131 0 0 chr1 25546737 25547005 -217117348 + AluSx SINE Alu 1 268 -44 1722 158 13 3 chr1 25547696 25547999 -217116354 + AluJo SINE Alu 1 306 -6 1264 158 87 38 chr1 25548067 25548332 -217116021 - AluJo SINE Alu -34 278 1 1820 26 9 22 chr1 25548521 25548751 -217115602 - L1PA6 LINE L1 0 6154 5928 649 220 119 37 chr1 25548850 25549068 -217115285 + MIR SINE MIR 21 256 -6 1911 89 3 56 chr1 25549074 25549402 -217114951 - AluSg SINE Alu 0 312 1 278 100 0 0 chr1 25549725 25549765 -217114588 + LTR50 LTR ERVL 2 41 -754 709 199 294 21 chr1 25549795 25550122 -217114231 + LTR50 LTR ERVL 15 430 -365 520 180 72 0 chr1 25550131 25550270 -217114083 - L1MB7 LINE L1 0 6184 6036 332 181 11 106 chr1 25550260 25550354 -217113999 + L1MB3 LINE L1 5471 5555 -619 * 1732 100 52 0 chr1 25550354 25550603 -217113750 + AluSg SINE Alu 43 304 -6 568 99 0 63 chr1 25550612 25550754 -217113599 + (GGAA)n Simple_repeat Simple_repeat 1 133 0 2353 158 18 87 chr1 25550754 25550811 -217113542 + L1MB3 LINE L1 5551 5610 -573 2053 108 10 0 chr1 25550811 25551106 -217113247 + AluSx SINE Alu 1 298 -14 2353 158 18 87 chr1 25551106 25551206 -217113147 + L1MB3 LINE L1 5610 5715 -468 2697 99 0 8 chr1 25551206 25551571 -217112782 - THE1B LTR MaLR -2 362 1 2353 158 18 87 chr1 25551571 25551728 -217112625 + L1MB3 LINE L1 5715 5881 -302 2313 64 0 10 chr1 25551728 25552024 -217112329 + AluY SINE Alu 1 293 -18 2353 158 18 87 chr1 25552024 25552289 -217112064 + L1MB3 LINE L1 5881 6069 -114 559 159 0 0 chr1 25552289 25552377 -217111976 + FRAM SINE Alu 73 160 -16 230 284 108 0 chr1 25552408 25552510 -217111843 - LTR50 LTR ERVL -119 676 564 518 163 0 0 chr1 25552510 25552608 -217111745 + L1MB3 LINE L1 6085 6182 -1 961 178 93 9 chr1 25552608 25552822 -217111531 - L1MB5 LINE L1 -139 6035 5804 290 200 17 0 chr1 25552827 25552887 -217111466 + LTR50 LTR ERVL 552 612 -183 1375 191 20 31 chr1 25552898 25553417 -217110936 + pTR5 LTR ERV1 772 1332 -1106 3223 151 86 74 chr1 25553433 25554109 -217110244 + LTR12 LTR ERV1 5 688 0 541 232 79 6 chr1 25554124 25554209 -217110144 + LTR50 LTR ERVL 619 696 -99 1331 205 24 24 chr1 25554209 25554507 -217109846 - AluJo SINE Alu -14 298 1 541 232 79 6 chr1 25554507 25554585 -217109768 + LTR50 LTR ERVL 696 794 -1 281 311 57 79 chr1 25555034 25555262 -217109091 - MIR SINE MIR 0 262 40 245 164 16 82 chr1 25555343 25555404 -217108949 + L1ME LINE L1 5534 5590 -531 1377 160 92 18 chr1 25555518 25555675 -217108678 - AluJb SINE Alu -9 303 159 333 0 0 0 chr1 25555675 25555712 -217108641 + (TG)n Simple_repeat Simple_repeat 2 38 0 1377 160 92 18 chr1 25555712 25555836 -217108517 - AluJb SINE Alu -153 159 1 1932 144 41 47 chr1 25555838 25556121 -217108232 + MER47A DNA MER2_type 6 288 -2035 1929 137 3 0 chr1 25556121 25556414 -217107939 + AluSx SINE Alu 1 294 -18 1932 144 41 47 chr1 25556414 25556492 -217107861 + MER47A DNA MER2_type 288 365 -1 1480 148 8 19 chr1 25556713 25556970 -217107383 - AluJb SINE Alu -35 277 24 1789 159 0 13 chr1 25556974 25557275 -217107078 - AluJb SINE Alu -15 297 1 757 265 90 13 chr1 25557555 25557877 -217106476 + L1ME4a LINE L1 5556 5900 -221 1800 123 11 73 chr1 25557955 25558016 -217106337 - MER4A LTR ERV1 -2 662 599 2502 64 0 3 chr1 25558016 25558312 -217106041 + AluY SINE Alu 1 295 -16 1800 123 11 73 chr1 25558312 25558616 -217105737 - MER4A LTR ERV1 -65 599 261 630 72 31 21 chr1 25558616 25558713 -217105640 - MER4A LTR ERV1 -566 98 1 369 272 39 56 chr1 25559185 25559365 -217104988 - L2 LINE L2 -17 3296 3120 775 201 129 68 chr1 25559400 25559663 -217104690 - MLT1J LTR MaLR -2 509 231 2437 107 0 0 chr1 25559667 25559977 -217104376 + AluSg SINE Alu 1 310 0 545 146 42 10 chr1 25560150 25560246 -217104107 + AluJo SINE Alu 36 134 -178 312 181 36 48 chr1 25560258 25560341 -217104012 - MIR SINE MIR -119 143 62 383 188 0 0 chr1 25560521 25560585 -217103768 + L2 LINE L2 3210 3273 -40 1880 188 58 52 chr1 25560602 25560939 -217103414 - L1ME2 LINE L1 -116 6048 5705 1931 129 24 3 chr1 25560939 25561233 -217103120 - AluSq SINE Alu -13 300 1 1880 188 58 52 chr1 25561233 25561412 -217102941 - L1ME2 LINE L1 -459 5705 5529 502 325 12 0 chr1 25562133 25562302 -217102051 + L2 LINE L2 2459 2629 -685 1310 268 63 35 chr1 25562418 25562880 -217101473 - LTR33 LTR ERVL -46 475 1 1118 283 86 8 chr1 25562880 25563160 -217101193 + MLT1K LTR MaLR 76 451 -137 2699 42 0 10 chr1 25563160 25563472 -217100881 + AluY SINE Alu 1 309 -2 1118 283 86 8 chr1 25563472 25563621 -217100732 + MLT1K LTR MaLR 451 587 -1 1948 141 40 13 chr1 25563972 25564276 -217100077 + AluJb SINE Alu 1 312 0 841 126 0 8 chr1 25564750 25564877 -217099476 - FLAM_A SINE Alu -10 132 7 241 240 0 0 chr1 25565232 25565282 -217099071 + GA-rich Low_complexity Low_complexity 3 52 0 255 133 0 0 chr1 25565285 25565330 -217099023 + (GGGGA)n Simple_repeat Simple_repeat 4 48 0 203 148 37 0 chr1 25565781 25565835 -217098518 + C-rich Low_complexity Low_complexity 5 60 0 225 0 0 0 chr1 25566208 25566233 -217098120 + (CGGGG)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr1 25566258 25566282 -217098071 + (A)n Simple_repeat Simple_repeat 1 24 0 1744 144 75 7 chr1 25567220 25567512 -217096841 - AluJb SINE Alu 0 312 1 1738 140 77 0 chr1 25568277 25568562 -217095791 - AluJb SINE Alu 0 312 6 24 32 0 0 chr1 25568872 25568903 -217095450 + AT_rich Low_complexity Low_complexity 1 31 0 379 210 49 12 chr1 25569246 25569327 -217095026 + AluJ/FRAM SINE Alu 219 302 0 1031 191 75 72 chr1 25569398 25569744 -217094609 + L1MC4 LINE L1 7696 8042 0 181 371 89 19 chr1 25570195 25570454 -217093899 + L2 LINE L2 2811 3087 -185 1786 87 35 131 chr1 25570843 25571187 -217093166 + AluSq SINE Alu 1 311 -2 13516 110 41 8 chr1 25571733 25571928 -217092425 - Tigger1 DNA MER2_type -10 2408 2221 1827 156 3 21 chr1 25571928 25572216 -217092137 + AluJb SINE Alu 6 288 -24 13516 110 41 8 chr1 25572216 25574058 -217090295 - Tigger1 DNA MER2_type -197 2221 304 2283 75 0 7 chr1 25574076 25574392 -217089961 + AluSc SINE Alu 1 314 0 1834 160 36 0 chr1 25574578 25574884 -217089469 - Tigger1 DNA MER2_type -2101 317 1 1999 111 4 0 chr1 25575146 25575407 -217088946 + AluSx SINE Alu 35 296 -16 2454 69 0 0 chr1 25576000 25576289 -217088064 + AluY SINE Alu 1 289 -22 687 136 7 130 chr1 25576311 25576428 -217087925 - AluJo SINE Alu -176 136 41 1935 120 42 11 chr1 25576428 25576711 -217087642 + AluSx SINE Alu 1 292 -20 687 136 7 130 chr1 25576711 25576747 -217087606 - AluJo SINE Alu -271 41 2 2187 123 0 0 chr1 25577731 25578031 -217086322 + AluSx SINE Alu 1 300 -12 286 194 108 43 chr1 25578062 25578155 -217086198 + MER5C DNA MER1_type 226 324 0 333 0 0 0 chr1 25578472 25578509 -217085844 + (TG)n Simple_repeat Simple_repeat 1 37 0 2384 98 0 0 chr1 25578907 25579212 -217085141 + AluSg SINE Alu 1 305 -5 843 141 0 0 chr1 25579227 25579355 -217084998 + FLAM_C SINE Alu 1 128 -5 2169 115 0 31 chr1 25580139 25580461 -217083892 - AluSx SINE Alu 0 312 1 848 142 0 16 chr1 25580755 25580882 -217083471 + FLAM_C SINE Alu 1 125 -8 918 128 0 0 chr1 25581087 25581212 -217083141 + FLAM_C SINE Alu 1 125 -18 1882 165 0 35 chr1 25581627 25581803 -217082550 - AluJb SINE Alu -8 304 123 239 0 32 0 chr1 25581803 25581834 -217082519 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1952 148 0 7 chr1 25581836 25582120 -217082233 - AluSx SINE Alu -30 282 1 1882 165 0 35 chr1 25582120 25582255 -217082098 - AluJb SINE Alu -190 122 1 959 128 0 0 chr1 25582263 25582396 -217081957 - FLAM_C SINE Alu 0 133 1 199 260 20 0 chr1 25582756 25582806 -217081547 + L2 LINE L2 3222 3272 0 2992 71 1 22 chr1 25583420 25583913 -217080440 + L1PA4 LINE L1 4461 6178 0 2073 209 25 9 chr1 25583913 25584359 -217079994 + L1 LINE L1 4550 5002 -1144 630 142 9 9 chr1 25584359 25584465 -217079888 + FLAM_A SINE Alu 32 137 -5 256 136 0 0 chr1 25584467 25584511 -217079842 + L1P LINE L1 5002 5045 -1101 2309 118 0 0 chr1 25584610 25584914 -217079439 + AluSx SINE Alu 1 304 -8 983 159 72 0 chr1 25584926 25585133 -217079220 + L1MB4 LINE L1 5958 6179 -1 235 238 16 0 chr1 25585178 25585241 -217079112 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 422 305 67 49 chr1 25585419 25585763 -217078590 + LTR16C LTR ERVL 142 491 0 439 154 13 0 chr1 25586010 25586088 -217078265 - MER116 DNA Mariner -1 79 1 2201 81 0 4 chr1 25586112 25586383 -217077970 - AluSx SINE Alu -16 296 27 458 279 95 0 chr1 25586385 25586543 -217077810 + L1M4 LINE L1 4195 4367 -1779 189 213 0 0 chr1 25586569 25586616 -217077737 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 351 0 0 0 chr1 25586648 25586687 -217077666 + (CA)n Simple_repeat Simple_repeat 2 40 0 648 153 0 0 chr1 25586693 25586791 -217077562 - AluSg/x SINE Alu -19 290 193 21 26 0 26 chr1 25586969 25586988 -217077365 + AT_rich Low_complexity Low_complexity 1 19 -19 1992 96 0 15 chr1 25586988 25587260 -217077093 + AluSx SINE Alu 1 268 -44 21 26 0 26 chr1 25587260 25587279 -217077074 + AT_rich Low_complexity Low_complexity 19 38 0 950 117 0 0 chr1 25587863 25588000 -217076353 - AluSg/x SINE Alu -1 311 175 1342 179 0 0 chr1 25589154 25589366 -217074987 - AluJo SINE Alu -30 282 71 1614 131 112 0 chr1 25590088 25590347 -217074006 - AluSg SINE Alu -22 288 1 1200 272 69 60 chr1 25591305 25592169 -217072184 + L1MEc LINE L1 2153 3003 -3212 817 143 14 14 chr1 25592175 25592315 -217072038 + AluJo SINE Alu 6 145 -167 1498 148 54 40 chr1 25592315 25592593 -217071760 + AluJo SINE Alu 1 282 -30 2376 100 0 0 chr1 25592595 25592895 -217071458 - AluSx SINE Alu -12 300 1 24 0 0 0 chr1 25592898 25592922 -217071431 + AT_rich Low_complexity Low_complexity 1 24 0 664 171 120 0 chr1 25592942 25593059 -217071294 + FLAM_A SINE Alu 1 131 -2 1899 172 0 10 chr1 25593116 25593424 -217070929 + AluJb SINE Alu 2 306 -6 2092 119 4 0 chr1 25593783 25594061 -217070292 + AluSx SINE Alu 11 289 -23 574 193 140 53 chr1 25594680 25594851 -217069502 + MER105 DNA DNA 1 186 -18 2228 116 0 0 chr1 25595249 25595571 -217068782 - AluSx SINE Alu 0 322 1 327 327 27 0 chr1 25595584 25595694 -217068659 - L2 LINE L2 -5 3267 3155 2424 80 10 13 chr1 25595711 25596023 -217068330 + AluY SINE Alu 1 311 0 519 260 41 46 chr1 25596371 25596562 -217067791 + MIR SINE MIR 2 192 -66 2130 135 3 3 chr1 25596562 25596865 -217067488 + AluSx SINE Alu 1 303 -9 2435 69 0 16 chr1 25597365 25597671 -217066682 + AluY SINE Alu 1 301 -10 1427 98 0 0 chr1 25597671 25597854 -217066499 + AluSc SINE Alu 108 290 -19 27 73 0 0 chr1 25600399 25600454 -217063899 + AT_rich Low_complexity Low_complexity 1 55 0 2171 92 10 10 chr1 25600661 25600954 -217063399 + AluSp SINE Alu 1 293 -20 2235 58 0 38 chr1 25601425 25601759 -217062594 - AluY SINE Alu 0 323 1 849 165 0 0 chr1 25601862 25601989 -217062364 + FLAM_A SINE Alu 1 127 -6 244 235 15 15 chr1 25602072 25602140 -217062213 - MIR3 SINE MIR -22 186 119 205 241 52 0 chr1 25604703 25604761 -217059592 - MIR SINE MIR -109 99 39 1702 158 70 0 chr1 25604849 25605122 -217059231 - AluJb SINE Alu -20 292 1 2211 117 3 0 chr1 25605387 25605678 -217058675 - AluSx SINE Alu -20 292 1 443 303 92 35 chr1 25606060 25606301 -217058052 + L1P4 LINE L1 4980 5206 -955 2617 171 22 92 chr1 25606301 25606401 -217057952 - MER41C LTR ERV1 0 554 449 2355 88 7 3 chr1 25606401 25606709 -217057644 - AluSp SINE Alu -4 309 1 2617 171 22 92 chr1 25606709 25606745 -217057608 - MER41C LTR ERV1 -105 449 412 2370 112 0 0 chr1 25606745 25607049 -217057304 + AluSx SINE Alu 1 304 -8 2617 171 22 92 chr1 25607049 25607507 -217056846 - MER41C LTR ERV1 -142 412 1 443 303 92 35 chr1 25607507 25607987 -217056366 + L1P4 LINE L1 5206 5716 -445 1639 185 145 17 chr1 25609091 25609259 -217055094 - MLT1F LTR MaLR 0 542 397 2452 187 72 112 chr1 25609259 25609869 -217054484 + LTR1B LTR ERV1 1 570 -256 2416 68 0 0 chr1 25609869 25610179 -217054174 + AluSc SINE Alu 1 310 0 2452 187 72 112 chr1 25610179 25610427 -217053926 + LTR1B LTR ERV1 570 826 0 1639 185 145 17 chr1 25610427 25610679 -217053674 - MLT1F LTR MaLR -145 397 68 264 242 132 11 chr1 25610867 25610958 -217053395 - MLT1K LTR MaLR -278 310 209 2271 113 0 10 chr1 25611560 25611861 -217052492 + AluSx SINE Alu 4 301 -11 206 257 14 54 chr1 25612042 25612116 -217052237 + L2 LINE L2 3197 3267 -5 2189 139 3 0 chr1 25612339 25612641 -217051712 - AluSx SINE Alu -9 303 1 1385 185 42 8 chr1 25612889 25613149 -217051204 + MER66B LTR ERV1 1 269 -217 315 70 0 0 chr1 25613149 25613192 -217051161 + Alu SINE Alu 1 43 -259 452 292 48 30 chr1 25613239 25613407 -217050946 - MER5B DNA MER1_type 0 178 8 2129 130 0 0 chr1 25613612 25613911 -217050442 - AluSx SINE Alu -13 299 1 511 258 145 32 chr1 25613985 25614042 -217050311 + L2 LINE L2 3107 3156 -157 1962 163 0 0 chr1 25614042 25614342 -217050011 - AluJb SINE Alu -12 300 1 511 258 145 32 chr1 25614342 25614470 -217049883 + L2 LINE L2 3156 3313 0 448 266 89 0 chr1 25614469 25614593 -217049760 - MIR3 SINE MIR -69 139 5 * 353 239 33 0 chr1 25614930 25615022 -217049331 - MIR3 SINE MIR -24 184 90 228 67 0 0 chr1 25615345 25615375 -217048978 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 2032 95 0 53 chr1 25615753 25616038 -217048315 - AluSx SINE Alu -15 297 28 1654 188 3 13 chr1 25616176 25616490 -217047863 - AluJb SINE Alu -1 311 1 276 287 124 74 chr1 25616515 25617057 -217047296 + L2 LINE L2 2737 3309 -4 369 223 173 22 chr1 25617375 25617514 -217046839 - MIR SINE MIR -52 210 51 850 182 6 6 chr1 25617833 25617992 -217046361 + FRAM SINE Alu 1 158 -18 1779 135 35 61 chr1 25617994 25618305 -217046048 + AluSx SINE Alu 1 303 -9 301 338 133 0 chr1 25618456 25618607 -217045746 + MIR3 SINE MIR 37 207 -1 243 284 0 30 chr1 25618590 25618657 -217045696 - L2 LINE L2 -9 3304 3240 * 207 183 0 56 chr1 25619079 25619150 -217045203 + G-rich Low_complexity Low_complexity 3 69 0 364 315 28 0 chr1 25619888 25619996 -217044357 + L2 LINE L2 3158 3268 -4 243 165 16 0 chr1 25621421 25621477 -217042876 + MIR SINE MIR 96 135 -73 2690 46 0 0 chr1 25621506 25621813 -217042540 + AluY SINE Alu 1 307 -4 206 175 25 0 chr1 25621901 25621941 -217042412 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1648 139 12 8 chr1 25622135 25622387 -217041966 + AluJo SINE Alu 46 298 -14 863 202 121 24 chr1 25622599 25622680 -217041673 + ORSL DNA AcHobo 3 75 -200 2145 106 0 45 chr1 25622680 25622992 -217041361 + AluSq SINE Alu 3 300 -13 863 202 121 24 chr1 25622992 25623158 -217041195 + ORSL DNA AcHobo 75 274 -1 2293 103 3 3 chr1 25623256 25623557 -217040796 + AluSx SINE Alu 1 301 -11 632 258 30 6 chr1 25623861 25624028 -217040325 - MIR SINE MIR 0 262 92 388 310 101 16 chr1 25624050 25624179 -217040174 + L2 LINE L2 3133 3272 0 323 293 138 22 chr1 25624622 25624803 -217039550 + HAL1 LINE L1 841 1042 -1465 2417 89 3 3 chr1 25624864 25625177 -217039176 + AluSp SINE Alu 1 313 0 301 350 0 26 chr1 25625641 25625758 -217038595 + L1ME LINE L1 825 938 -5132 431 287 91 48 chr1 25625772 25625852 -217038501 + HAL1b LINE L1 368 443 -905 2373 102 0 13 chr1 25625852 25626167 -217038186 + AluSx SINE Alu 1 311 -1 431 287 91 48 chr1 25626167 25626648 -217037705 + HAL1b LINE L1 443 616 -732 660 218 65 0 chr1 25627024 25627194 -217037159 - MER113 DNA MER1_type? -195 326 146 423 0 0 0 chr1 25627197 25627244 -217037109 + (TG)n Simple_repeat Simple_repeat 2 48 0 1870 128 14 31 chr1 25627244 25627439 -217036914 - AluJb SINE Alu -27 285 95 2240 141 11 16 chr1 25627439 25627815 -217036538 + THE1C LTR MaLR 1 374 -1 1870 128 14 31 chr1 25627815 25627909 -217036444 - AluJb SINE Alu -217 95 1 692 229 18 6 chr1 25627909 25628075 -217036278 - MLT1G1 LTR MaLR -423 172 5 247 379 71 14 chr1 25628796 25628936 -217035417 - L2 LINE L2 -3 3269 3122 183 273 45 34 chr1 25629059 25629147 -217035206 - MIR SINE MIR -6 256 168 309 250 190 0 chr1 25629258 25629358 -217034995 - MIR SINE MIR -123 139 21 609 262 23 35 chr1 25630151 25630323 -217034030 - MIR SINE MIR -13 249 80 881 142 0 8 chr1 25630416 25630550 -217033803 - FLAM_A SINE Alu 0 133 1 228 35 0 0 chr1 25630636 25630665 -217033688 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1875 109 74 0 chr1 25630665 25630922 -217033431 - AluSx SINE Alu -36 276 1 908 178 47 138 chr1 25631174 25631450 -217032903 + MIR SINE MIR 2 252 -10 466 238 114 0 chr1 25631478 25631583 -217032770 + MIR SINE MIR 24 140 -122 1200 194 28 35 chr1 25631585 25631874 -217032479 - AluJo SINE Alu -11 291 5 2399 73 10 13 chr1 25683587 25683887 -216980466 + AluSx SINE Alu 1 299 -13 242 220 150 10 chr1 25684088 25684188 -216980165 + L1ME4a LINE L1 6004 6117 -4 2082 124 3 3 chr1 25684203 25684494 -216979859 + AluSx SINE Alu 5 295 -17 211 294 0 0 chr1 25684504 25684555 -216979798 - MIR SINE MIR -77 131 81 483 267 38 35 chr1 25684649 25684890 -216979463 - MIR SINE MIR -18 244 6 629 155 10 0 chr1 25685240 25685343 -216979010 + AluJb SINE Alu 9 112 -200 313 177 56 5 chr1 25685446 25685609 -216978744 + L1MB8 LINE L1 5884 6130 -48 1063 229 175 23 chr1 25685719 25686200 -216978153 + L1MD3 LINE L1 7429 7982 -13 192 40 0 0 chr1 25686373 25686398 -216977955 + (T)n Simple_repeat Simple_repeat 1 25 0 428 357 0 27 chr1 25686452 25686637 -216977716 + CT-rich Low_complexity Low_complexity 1 180 0 206 262 24 24 chr1 25686614 25686698 -216977655 + (TCTCTG)n Simple_repeat Simple_repeat 3 86 0 * 323 286 23 15 chr1 25686747 25686880 -216977473 + CT-rich Low_complexity Low_complexity 1 134 0 2136 133 3 3 chr1 25687144 25687438 -216976915 - AluJb SINE Alu -13 299 6 2605 65 0 3 chr1 25687504 25687810 -216976543 - AluSc SINE Alu 0 309 5 2038 147 59 7 chr1 25688114 25688300 -216976053 + L1M4 LINE L1 5378 5553 -631 2461 75 3 10 chr1 25688300 25688608 -216975745 + AluSq SINE Alu 1 306 -7 2038 147 59 7 chr1 25688608 25688828 -216975525 + L1M4 LINE L1 5553 5805 -379 363 211 57 68 chr1 25688836 25688885 -216975468 + AluJb SINE Alu 1 49 -253 3581 134 72 7 chr1 25688885 25689481 -216974872 - MER41B LTR ERV1 0 635 1 363 211 57 68 chr1 25689481 25689590 -216974763 + AluJb SINE Alu 49 143 -159 442 199 76 88 chr1 25689808 25689979 -216974374 - MIR SINE MIR -54 208 40 1568 165 4 8 chr1 25690057 25690311 -216974042 - AluJb SINE Alu -59 253 1 191 267 44 78 chr1 25690370 25690460 -216973893 - L2 LINE L2 0 3313 3227 290 357 115 29 chr1 25690582 25690826 -216973527 - L2 LINE L2 -341 2973 2709 1074 81 15 0 chr1 25691004 25691140 -216973213 + AluSq/x SINE Alu 1 138 -174 2457 75 0 22 chr1 25691140 25691458 -216972895 + AluY SINE Alu 1 311 0 1860 178 0 10 chr1 25691468 25691771 -216972582 + AluJb SINE Alu 1 300 -12 511 180 0 0 chr1 25692187 25692276 -216972077 + AluSp/q SINE Alu 213 301 -12 2091 147 3 3 chr1 25692355 25692667 -216971686 + AluJb SINE Alu 1 312 0 262 241 0 17 chr1 25692667 25692717 -216971636 - MIR SINE MIR -16 246 196 299 120 84 30 chr1 25692728 25692781 -216971572 + Alu SINE Alu 242 260 -42 2183 111 3 3 chr1 25692781 25693078 -216971275 + AluSx SINE Alu 1 297 -15 299 120 84 30 chr1 25693078 25693110 -216971243 + Alu SINE Alu 260 289 -13 2166 122 0 27 chr1 25693110 25693446 -216970907 - pTR5 LTR ERV1 -2046 392 66 280 258 31 21 chr1 25693446 25693543 -216970810 - LTR30 LTR ERV1 -80 642 545 989 97 131 11 chr1 25693544 25693719 -216970634 - pTR5 LTR ERV1 -413 2025 1830 839 198 0 19 chr1 25693884 25694041 -216970312 + AluJb SINE Alu 146 299 -13 2157 109 7 7 chr1 25694053 25694347 -216970006 + AluSq SINE Alu 1 294 -19 2247 100 3 0 chr1 25694410 25694701 -216969652 + AluSp SINE Alu 1 292 -21 2216 105 0 3 chr1 25694988 25695292 -216969061 - AluSg SINE Alu -7 303 1 378 220 247 40 chr1 25695775 25695911 -216968442 + MIR SINE MIR 21 192 -70 2377 113 0 0 chr1 25695911 25696221 -216968132 + AluSx SINE Alu 1 310 -2 378 220 247 40 chr1 25696221 25696234 -216968119 + MIR SINE MIR 192 201 -61 251 205 205 110 chr1 25696347 25696474 -216967879 - MIR SINE MIR 0 262 124 608 192 75 34 chr1 25696475 25696621 -216967732 - MIR SINE MIR -103 159 8 2505 74 0 3 chr1 25696864 25697163 -216967190 - AluSp SINE Alu -15 298 1 1653 257 58 19 chr1 25697163 25697626 -216966727 - L2 LINE L2 -7 3306 2826 2332 92 3 0 chr1 25698133 25698426 -216965927 - AluSx SINE Alu -18 294 1 298 300 179 14 chr1 25699330 25699470 -216964883 + MER5A DNA MER1_type 18 180 -9 238 241 35 0 chr1 25699597 25699655 -216964698 + L2 LINE L2 3246 3305 -8 2598 34 10 0 chr1 25699659 25699955 -216964398 + AluY SINE Alu 2 300 -11 198 0 0 0 chr1 25699955 25699977 -216964376 + (TA)n Simple_repeat Simple_repeat 2 23 0 1501 151 10 62 chr1 25700083 25700234 -216964119 - AluJo SINE Alu -36 276 146 1696 146 73 7 chr1 25700234 25700508 -216963845 - AluJb SINE Alu -19 293 2 1501 151 10 62 chr1 25700508 25700647 -216963706 - AluJo SINE Alu -166 146 1 1967 144 26 7 chr1 25701076 25701382 -216962971 - AluSx SINE Alu 0 312 1 1924 121 39 16 chr1 25701523 25701828 -216962525 + AluSx SINE Alu 1 312 0 330 330 17 9 chr1 25701889 25702004 -216962349 - MIR SINE MIR -63 145 30 1982 111 57 0 chr1 25702373 25702653 -216961700 - AluSx SINE Alu -16 296 1 272 265 20 20 chr1 25702691 25702789 -216961564 - L1M4 LINE L1 -2098 4048 3951 2485 71 0 10 chr1 25702852 25703160 -216961193 - AluSc SINE Alu -4 305 1 913 257 46 7 chr1 25703165 25703468 -216960885 - L1MEc LINE L1 -4628 1768 1454 2477 73 0 16 chr1 25703469 25703782 -216960571 - AluY SINE Alu -3 308 1 632 76 0 0 chr1 25703782 25703861 -216960492 - Alu SINE Alu -11 299 221 1093 119 0 6 chr1 25703863 25704023 -216960330 + AluSg/x SINE Alu 136 294 -18 1085 155 31 10 chr1 25704023 25704217 -216960136 + MER1B DNA MER1_type 142 339 0 240 227 106 61 chr1 25704557 25704689 -216959664 + MLT1K LTR MaLR 279 416 -172 975 165 76 76 chr1 25704711 25704948 -216959405 + AluJb SINE Alu 1 237 -75 1593 255 186 54 chr1 25705153 25705936 -216958417 - L2 LINE L2 -194 3078 2102 1630 175 17 24 chr1 25705936 25706233 -216958120 + AluJo SINE Alu 1 295 -17 1593 255 186 54 chr1 25706233 25706665 -216957688 - L2 LINE L2 -1170 2102 1728 2225 120 23 0 chr1 25707089 25707389 -216956964 + AluSx SINE Alu 1 307 -5 350 326 48 20 chr1 25707693 25707840 -216956513 + L2 LINE L2 3163 3313 0 1637 134 43 0 chr1 25707966 25708220 -216956133 - AluSx SINE Alu -47 265 1 995 146 0 0 chr1 25708223 25708374 -216955979 - FRAM SINE Alu -18 158 8 722 251 99 0 chr1 25708374 25708565 -216955788 - MIR SINE MIR -38 224 15 2261 97 0 0 chr1 25708696 25708995 -216955358 + AluSg SINE Alu 1 299 -11 2236 109 0 0 chr1 25709003 25709307 -216955046 + AluSp SINE Alu 1 304 -9 1171 103 6 0 chr1 25709307 25709472 -216954881 + AluSq SINE Alu 134 299 -14 2088 140 0 0 chr1 25709560 25709868 -216954485 + AluJo SINE Alu 3 310 -2 212 299 65 65 chr1 25709885 25710039 -216954314 + L2 LINE L2 2332 2485 -829 31 0 0 0 chr1 25710798 25710829 -216953524 + AT_rich Low_complexity Low_complexity 1 31 0 874 169 36 46 chr1 25712014 25712209 -216952144 + AluJb SINE Alu 102 294 -18 548 257 95 11 chr1 25712566 25712745 -216951608 + MIR SINE MIR 52 245 -17 761 164 132 20 chr1 25712919 25713071 -216951282 - AluJb SINE Alu -4 308 140 1803 151 0 3 chr1 25713221 25713534 -216950819 - AluSx SINE Alu 0 312 1 340 75 0 38 chr1 25713534 25713587 -216950766 + MER4A LTR ERV1 308 358 -306 2096 98 19 41 chr1 25713623 25713940 -216950413 + MER4A LTR ERV1 355 664 0 347 187 133 0 chr1 25714037 25714112 -216950241 - LTR24 LTR ERV1 0 467 383 * 2019 139 18 54 chr1 25714089 25714242 -216950111 - LTR23 LTR ERV1 -62 375 218 1993 125 24 0 chr1 25714242 25714538 -216949815 + AluSx SINE Alu 1 303 -9 2023 100 17 3 chr1 25714542 25714831 -216949522 + AluSg SINE Alu 1 293 -17 2019 139 18 54 chr1 25714831 25715059 -216949294 - LTR23 LTR ERV1 -222 215 3 1300 94 0 0 chr1 25715475 25715645 -216948708 + AluSg/x SINE Alu 133 302 -10 258 237 34 0 chr1 25717094 25717153 -216947200 - MIR3 SINE MIR -10 198 138 2257 92 0 3 chr1 25717429 25717734 -216946619 - AluSx SINE Alu -8 304 1 842 121 23 0 chr1 25717735 25717867 -216946486 - AluJb SINE Alu -177 135 1 702 296 96 70 chr1 25718058 25718219 -216946134 - MLT1K LTR MaLR -129 459 304 2002 113 0 10 chr1 25718219 25718520 -216945833 - AluSx SINE Alu -14 298 1 702 296 96 70 chr1 25718520 25718804 -216945549 - MLT1K LTR MaLR -284 304 2 429 314 0 8 chr1 25719934 25720050 -216944303 - MIR SINE MIR -5 257 143 543 271 39 13 chr1 25720050 25720205 -216944148 + MER91A DNA MER1_type 1 159 -37 210 305 163 21 chr1 25720179 25720320 -216944033 - MIR SINE MIR -93 169 9 * 323 296 183 14 chr1 25720394 25720536 -216943817 + MIR3 SINE MIR 3 168 -40 248 216 128 88 chr1 25720891 25721016 -216943337 + MIR3 SINE MIR 55 184 -24 339 210 29 19 chr1 25721447 25721552 -216942801 + MIR SINE MIR 94 201 -56 454 250 27 9 chr1 25721597 25721709 -216942644 + L2 LINE L2 3190 3303 -10 1297 82 17 82 chr1 25721709 25721849 -216942504 + AluSx SINE Alu 1 122 -190 2026 86 14 3 chr1 25721849 25722139 -216942214 + AluSg SINE Alu 1 293 -17 1297 82 17 82 chr1 25722139 25722230 -216942123 + AluSx SINE Alu 122 217 -95 1422 158 27 27 chr1 25722432 25722691 -216941662 + AluJo SINE Alu 1 259 -53 1752 175 3 0 chr1 25722822 25723119 -216941234 + AluSx SINE Alu 1 298 -14 908 78 0 0 chr1 25723431 25723547 -216940806 - AluSg/x SINE Alu -64 248 133 2026 101 10 3 chr1 25723553 25723841 -216940512 - AluSg SINE Alu -20 290 1 1974 141 3 0 chr1 25723843 25724148 -216940205 - AluSx SINE Alu -5 307 2 325 305 116 42 chr1 25724154 25724560 -216939793 - MLT1L LTR MaLR -70 545 110 1116 310 56 5 chr1 25725000 25725390 -216938963 + L2 LINE L2 1912 2321 -993 1220 163 4 9 chr1 25725390 25725617 -216938736 - AluJb SINE Alu 0 312 87 761 248 87 0 chr1 25725617 25725823 -216938530 + L2 LINE L2 2309 2532 -782 295 291 60 0 chr1 25725825 25725942 -216938411 - L1M4 LINE L1 -917 5229 5106 1963 141 0 3 chr1 25725955 25726254 -216938099 + AluSx SINE Alu 1 298 -14 243 0 0 0 chr1 25726254 25726281 -216938072 + (TA)n Simple_repeat Simple_repeat 1 27 0 1077 262 78 42 chr1 25726340 25726841 -216937512 + L2 LINE L2 2556 3068 -245 1830 138 7 3 chr1 25726906 25727197 -216937156 + AluSc SINE Alu 1 292 -17 234 88 0 0 chr1 25727207 25727241 -216937112 - L1M1 LINE L1 -4701 2864 2831 2198 100 0 0 chr1 25727246 25727545 -216936808 + AluY SINE Alu 1 299 -12 274 134 23 0 chr1 25727690 25727744 -216936609 - Alu SINE Alu -250 53 11 4974 145 29 36 chr1 25727764 25728224 -216936129 - L1MB7 LINE L1 -5 6179 5717 2077 104 0 45 chr1 25728224 25728533 -216935820 + AluSx SINE Alu 1 295 -17 4974 145 29 36 chr1 25728533 25729101 -216935252 - L1MB7 LINE L1 -467 5717 5159 247 54 0 0 chr1 25729103 25729167 -216935186 - Alu SINE Alu 0 331 268 749 154 69 8 chr1 25729269 25729399 -216934954 + FRAM SINE Alu 22 159 -17 2170 108 0 0 chr1 25729402 25729698 -216934655 + AluSx SINE Alu 1 296 -16 1281 224 33 15 chr1 25729698 25730028 -216934325 - L1ME1 LINE L1 -139 6027 5692 2156 116 0 0 chr1 25730044 25730338 -216934015 - AluSx SINE Alu -16 296 3 394 297 39 28 chr1 25730519 25730701 -216933652 - MIR SINE MIR -65 197 14 2109 97 3 3 chr1 25730938 25731237 -216933116 - AluSg SINE Alu -11 299 1 247 246 58 0 chr1 25731295 25731364 -216932989 - MIR SINE MIR -83 179 107 317 281 79 50 chr1 25731364 25731603 -216932750 - MLT1L LTR MaLR -4 605 363 336 240 160 10 chr1 25731690 25731790 -216932563 - MLT1L LTR MaLR -375 240 126 874 206 0 0 chr1 25731848 25732018 -216932335 + FRAM SINE Alu 1 170 -6 2136 92 10 7 chr1 25732019 25732323 -216932030 + AluSx SINE Alu 5 309 -3 2192 68 3 20 chr1 25732326 25732622 -216931731 + AluY SINE Alu 6 296 -15 900 303 66 5 chr1 25732623 25733003 -216931350 + L1ME3A LINE L1 5549 5951 -219 1528 151 3 80 chr1 25733213 25733524 -216930829 + AluJo SINE Alu 12 298 -14 856 169 124 10 chr1 25733608 25733809 -216930544 - AluJo SINE Alu -18 294 71 1127 161 0 27 chr1 25733973 25734197 -216930156 - AluSg SINE Alu -92 218 1 1739 129 3 31 chr1 25734328 25734615 -216929738 + AluJo SINE Alu 1 279 -33 216 67 0 0 chr1 25734617 25734647 -216929706 + (CA)n Simple_repeat Simple_repeat 1 30 0 232 174 145 29 chr1 25734651 25734696 -216929657 + MER103 DNA DNA 19 76 -90 923 202 56 0 chr1 25734696 25734894 -216929459 + MER3 DNA MER1_type 1 209 0 232 174 145 29 chr1 25734894 25734917 -216929436 + MER103 DNA DNA 76 95 -71 2050 96 14 3 chr1 25734959 25735250 -216929103 - AluSx SINE Alu -18 294 1 618 177 41 34 chr1 25735304 25735451 -216928902 - MIR3 SINE MIR -46 162 15 322 299 160 0 chr1 25735493 25735637 -216928716 - MIR SINE MIR -7 255 89 1832 136 7 19 chr1 25736057 25736365 -216927988 + AluJb SINE Alu 1 304 -8 239 119 0 0 chr1 25736490 25736532 -216927821 + AluJo SINE Alu 260 301 -2 892 151 0 76 chr1 25736939 25737111 -216927242 - AluJo SINE Alu -151 161 3 222 37 0 0 chr1 25737119 25737146 -216927207 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 1611 160 32 7 chr1 25737165 25737447 -216926906 - AluSq SINE Alu -20 293 5 1573 127 8 4 chr1 25737867 25738112 -216926241 - AluJb SINE Alu -25 287 42 534 211 0 8 chr1 25738117 25738240 -216926113 - L1MC4 LINE L1 -1 8041 7920 260 304 9 0 chr1 25738246 25738361 -216925992 + (TA)n Simple_repeat Simple_repeat 1 116 0 1913 115 3 33 chr1 25738362 25738666 -216925687 - AluSx SINE Alu -17 295 1 2218 106 3 0 chr1 25738673 25738985 -216925368 - AluSq SINE Alu 0 313 1 743 185 0 0 chr1 25739007 25739126 -216925227 - FLAM_A SINE Alu -14 119 1 2333 97 0 0 chr1 25739166 25739477 -216924876 - AluSx SINE Alu -1 311 1 2197 95 3 0 chr1 25739490 25739784 -216924569 - AluSx SINE Alu -17 295 1 774 279 48 17 chr1 25740094 25740384 -216923969 + L1MC4 LINE L1 7251 7549 -493 957 146 6 12 chr1 25740529 25740693 -216923660 - AluSx SINE Alu -143 169 7 908 113 0 0 chr1 25740827 25740951 -216923402 + FLAM_C SINE Alu 1 124 -19 1243 157 36 39 chr1 25741168 25741474 -216922879 - AluJb SINE Alu -2 310 6 207 238 191 19 chr1 25742246 25742351 -216922002 + L2 LINE L2 94 216 -3098 555 182 0 0 chr1 25743323 25743411 -216920942 + FRAM/FAM SINE Alu 1 87 -89 952 292 79 23 chr1 25743538 25743932 -216920421 + L2 LINE L2 2377 2792 -522 1102 230 28 50 chr1 25743932 25744249 -216920104 + MLT1A1 LTR MaLR 1 310 -55 2217 111 0 9 chr1 25744271 25744587 -216919766 - AluSp SINE Alu 0 313 1 978 168 0 5 chr1 25744587 25744777 -216919576 - L1M4 LINE L1 -978 5168 4980 1693 179 31 70 chr1 25744811 25745131 -216919222 - L1M4 LINE L1 -1153 4993 4691 2018 123 27 0 chr1 25745131 25745432 -216918921 + AluSq SINE Alu 1 309 -4 1693 179 31 70 chr1 25745432 25745524 -216918829 - L1M4 LINE L1 -1455 4691 4597 483 249 216 22 chr1 25745773 25746042 -216918311 + L2 LINE L2 2181 2501 -813 213 225 100 0 chr1 25746211 25746291 -216918062 + L2 LINE L2 3021 3108 -205 1539 181 10 16 chr1 25746291 25746595 -216917758 - AluJb SINE Alu -10 302 1 503 144 0 144 chr1 25746603 25746735 -216917618 - AluJb SINE Alu 0 312 200 333 253 152 0 chr1 25746920 25747019 -216917334 + L3 LINE CR1 1406 1519 -58 364 235 229 20 chr1 25747517 25747670 -216916683 - MIR SINE MIR -6 256 72 253 241 35 58 chr1 25747846 25747933 -216916420 - MIR SINE MIR -70 192 108 959 117 14 7 chr1 25747938 25748083 -216916270 + AluSq/x SINE Alu 1 146 -167 458 256 30 15 chr1 25748218 25748351 -216916002 - LTR37B LTR ERV1 -333 135 1 2057 132 0 0 chr1 25748446 25748749 -216915604 - AluSx SINE Alu -9 303 1 261 216 0 0 chr1 25748812 25748863 -216915490 - MIR SINE MIR -32 230 180 1526 136 0 24 chr1 25749012 25749263 -216915090 + AluSx SINE Alu 2 246 -66 1334 158 15 38 chr1 25749423 25749689 -216914664 + AluJo SINE Alu 2 261 -51 440 286 219 23 chr1 25749850 25749899 -216914454 + L2 LINE L2 1841 1879 -1435 2670 19 0 0 chr1 25749899 25750206 -216914147 + AluYa5 SINE Alu 1 307 -4 440 286 219 23 chr1 25750206 25750544 -216913809 + L2 LINE L2 1879 2304 -1010 899 158 19 0 chr1 25750550 25750708 -216913645 - AluSc SINE Alu -10 299 139 2342 54 24 0 chr1 25750723 25751019 -216913334 - AluY SINE Alu -8 303 1 1645 139 3 58 chr1 25751410 25751720 -216912633 + AluSq SINE Alu 1 293 -20 293 295 0 0 chr1 25751728 25751806 -216912547 + MIR SINE MIR 180 257 -5 395 211 56 0 chr1 25751820 25751910 -216912443 - L2 LINE L2 -8 3264 3170 1222 176 64 78 chr1 25752023 25752318 -216912035 + AluJo SINE Alu 1 291 -11 1883 131 3 7 chr1 25752326 25752624 -216911729 + AluSx SINE Alu 3 299 -13 487 248 34 17 chr1 25752747 25752864 -216911489 - MIR SINE MIR -112 150 32 382 291 8 8 chr1 25752935 25753062 -216911291 - MIR SINE MIR -79 183 57 216 195 24 0 chr1 25753563 25753604 -216910749 + (CAT)n Simple_repeat Simple_repeat 2 43 0 1036 154 0 0 chr1 25753673 25753835 -216910518 - AluSg/x SINE Alu -17 293 132 1972 148 0 7 chr1 25753835 25754145 -216910208 - AluSx SINE Alu -4 308 1 1359 96 38 96 chr1 25754275 25754514 -216909839 + MER30 DNA MER1_type 6 230 0 401 232 384 0 chr1 25754517 25754681 -216909672 + MIR SINE MIR 12 238 -24 275 259 65 9 chr1 25755291 25755399 -216908954 - L1ME4a LINE L1 0 6121 6008 864 151 60 0 chr1 25755424 25755577 -216908776 - AluSg/x SINE Alu -16 296 131 1930 122 3 7 chr1 25755577 25755873 -216908480 - AluSx SINE Alu -17 295 1 864 151 60 0 chr1 25755873 25755885 -216908468 - AluSg/x SINE Alu -181 131 121 189 0 0 0 chr1 25755914 25755935 -216908418 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr1 25755962 25755984 -216908369 + AT_rich Low_complexity Low_complexity 1 22 0 1019 159 26 46 chr1 25756781 25756976 -216907377 + AluJb SINE Alu 1 191 -121 276 294 129 35 chr1 25758279 25758449 -216905904 - MIR SINE MIR -12 250 65 933 187 0 0 chr1 25759620 25759770 -216904583 - AluJb SINE Alu -26 286 137 526 240 129 12 chr1 25759885 25760056 -216904297 + MIR SINE MIR 48 238 -24 375 234 90 28 chr1 25760370 25760515 -216903838 - MIR3 SINE MIR -37 171 18 1079 89 7 0 chr1 25760750 25760885 -216903468 + AluSq/x SINE Alu 1 136 -176 2383 78 14 0 chr1 25760885 25761180 -216903173 + AluY SINE Alu 1 299 -12 198 71 0 0 chr1 25763580 25763608 -216900745 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 1852 151 45 3 chr1 25764106 25764397 -216899956 - AluSx SINE Alu -9 303 1 258 95 0 0 chr1 25764463 25764505 -216899848 + (TTTTTA)n Simple_repeat Simple_repeat 2 43 0 467 189 11 0 chr1 25764950 25765040 -216899313 - L2 LINE L2 -2 3311 3221 201 191 0 132 chr1 25765059 25765127 -216899226 + MIR3 SINE MIR 118 176 -32 498 229 46 15 chr1 25765455 25765586 -216898767 + MIR SINE MIR 26 160 -102 2165 136 0 0 chr1 25765589 25765891 -216898462 + AluSx SINE Alu 1 302 -10 200 184 0 0 chr1 25766014 25766052 -216898301 + MIR SINE MIR 114 151 -111 457 133 27 0 chr1 25766054 25766129 -216898224 + AluS SINE Alu 3 79 -233 1125 154 6 6 chr1 25766343 25766518 -216897835 + AluJb SINE Alu 130 304 -8 775 131 0 44 chr1 25766521 25766658 -216897695 + FLAM_C SINE Alu 1 131 -2 599 208 98 6 chr1 25766793 25766966 -216897387 + MIR SINE MIR 71 259 -3 2130 104 4 4 chr1 25767158 25767438 -216896915 + AluSq SINE Alu 21 300 -13 2093 106 3 7 chr1 25767449 25767756 -216896597 + AluSq SINE Alu 1 306 0 203 321 0 0 chr1 25767879 25767932 -216896421 - MIR SINE MIR -118 90 38 180 250 0 0 chr1 25768003 25768051 -216896302 + (CA)n Simple_repeat Simple_repeat 1 48 0 213 39 0 0 chr1 25768051 25768077 -216896276 + (TC)n Simple_repeat Simple_repeat 2 27 0 470 116 29 0 chr1 25768360 25768429 -216895924 - MLT1B LTR MaLR -296 94 24 205 326 22 0 chr1 25768524 25768613 -216895740 + MIR SINE MIR 172 262 0 2240 75 11 4 chr1 25768763 25769043 -216895310 + AluSc SINE Alu 1 282 -27 2248 134 0 0 chr1 25769062 25769369 -216894984 + AluSx SINE Alu 1 307 -5 2306 99 0 7 chr1 25769372 25769674 -216894679 + AluSx SINE Alu 1 300 -12 1643 170 7 7 chr1 25770396 25770678 -216893675 - AluJb SINE Alu -30 282 1 2389 87 6 3 chr1 25770743 25771055 -216893298 - AluSp SINE Alu 0 313 1 2203 106 0 20 chr1 25771200 25771502 -216892851 - AluSx SINE Alu -16 296 1 286 241 286 0 chr1 25771604 25771737 -216892616 - MER112 DNA MER1_type -2 258 88 252 220 275 28 chr1 25771823 25771932 -216892421 - MER5B DNA MER1_type -17 161 26 2345 68 0 0 chr1 25772259 25772537 -216891816 - AluY SINE Alu -20 291 14 2335 94 0 7 chr1 25772539 25772837 -216891516 - AluSq SINE Alu -17 296 1 1900 130 7 40 chr1 25776125 25776426 -216887927 + AluSg SINE Alu 1 291 -19 1179 207 23 23 chr1 25778652 25778908 -216885445 - AluJo SINE Alu -14 298 43 409 284 120 16 chr1 25779157 25779340 -216885013 - MIR SINE MIR -12 250 49 233 296 0 0 chr1 25779687 25779768 -216884585 + GA-rich Low_complexity Low_complexity 2 82 0 200 264 0 0 chr1 25779768 25779821 -216884532 + (CTG)n Simple_repeat Simple_repeat 3 55 0 452 194 51 0 chr1 25779983 25780081 -216884272 - L1MB8 LINE L1 -17 6161 6059 1394 50 72 0 chr1 25780201 25780381 -216883972 - L1PA4 LINE L1 -3 6152 5960 197 167 0 17 chr1 25780888 25780948 -216883405 + T-rich Low_complexity Low_complexity 2 60 0 202 29 57 0 chr1 25781233 25781268 -216883085 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 219 151 19 38 chr1 25781433 25781486 -216882867 + T-rich Low_complexity Low_complexity 5 56 0 225 94 0 0 chr1 25781875 25781907 -216882446 + (TG)n Simple_repeat Simple_repeat 1 32 0 1616 196 171 17 chr1 25782171 25782580 -216881773 + MLT1F LTR MaLR 63 534 -8 2228 110 0 7 chr1 25783131 25783439 -216880914 - AluSx SINE Alu -6 306 1 1824 112 8 0 chr1 25833599 25833850 -216830503 + AluSx SINE Alu 59 311 -1 307 306 74 19 chr1 25834125 25834233 -216830120 + MIR SINE MIR 37 150 -58 571 188 107 0 chr1 25834315 25834427 -216829926 + FLAM_C SINE Alu 2 125 -8 1197 133 12 0 chr1 25834447 25834613 -216829740 + AluSx SINE Alu 1 168 -144 1056 177 69 0 chr1 25834620 25834652 -216829701 + AluJo SINE Alu 85 113 -199 234 0 0 0 chr1 25834652 25834678 -216829675 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1056 177 69 0 chr1 25834678 25834848 -216829505 + AluJo SINE Alu 113 301 -11 21 0 0 0 chr1 25834866 25834887 -216829466 + AT_rich Low_complexity Low_complexity 1 21 0 425 282 15 23 chr1 25835211 25835342 -216829011 - MIR SINE MIR -100 162 33 533 286 35 12 chr1 25835486 25835657 -216828696 + MIR SINE MIR 21 195 -67 394 310 152 27 chr1 25835696 25836103 -216828250 - L2 LINE L2 0 3313 2856 361 263 79 2 chr1 25836675 25836789 -216827564 + MIR3 SINE MIR 43 159 -49 1837 109 64 8 chr1 25837522 25837815 -216826538 + AluSg SINE Alu 1 308 0 412 280 118 14 chr1 25837868 25838079 -216826274 + L1MC4 LINE L1 7752 7984 -58 2116 149 0 0 chr1 25838081 25838389 -216825964 - AluSx SINE Alu -4 308 1 947 104 80 0 chr1 25838389 25838514 -216825839 - AluSq/x SINE Alu -178 135 1 2260 127 3 0 chr1 25838953 25839261 -216825092 - AluSx SINE Alu -3 309 1 499 317 6 6 chr1 25839496 25839663 -216824690 + MIR3 SINE MIR 17 183 -25 1016 221 110 18 chr1 25840013 25840403 -216823950 - LTR33A LTR ERVL -8 515 90 609 264 106 14 chr1 25840963 25841171 -216823182 - MIR SINE MIR -22 240 14 226 269 226 11 chr1 25841588 25841681 -216822672 - MIR SINE MIR -51 211 99 540 225 123 31 chr1 25841766 25841932 -216822421 - MIR SINE MIR -27 181 24 416 250 60 32 chr1 25841977 25842193 -216822160 - HsTC2 DNA Tc2 0 1898 1677 309 162 29 29 chr1 25842194 25842262 -216822091 - L1MCa LINE L1 -4361 2065 1998 * 320 356 9 9 chr1 25842232 25842347 -216822006 + L1MC4 LINE L1 6614 6728 -1314 2113 136 10 0 chr1 25842433 25842734 -216821619 + AluSx SINE Alu 3 306 -6 283 212 182 0 chr1 25842932 25842998 -216821355 - MER63 DNA MER1_type -5 1055 978 1847 132 44 30 chr1 25843024 25843320 -216821033 + AluJo SINE Alu 1 300 -12 414 151 108 32 chr1 25843337 25843430 -216820923 - MER63 DNA MER1_type -336 726 1 1026 223 48 4 chr1 25843526 25843755 -216820598 - HsTC2 DNA Tc2 -362 1536 1298 305 235 0 35 chr1 25843806 25843891 -216820462 - HsTC2 DNA Tc2 -1816 82 1 2386 105 3 0 chr1 25844341 25844645 -216819708 - AluSx SINE Alu -7 305 1 251 268 197 0 chr1 25844654 25844725 -216819628 + L2 LINE L2 3186 3270 -2 375 105 0 0 chr1 25844976 25845033 -216819320 + (CGGGG)n Simple_repeat Simple_repeat 2 58 0 356 298 13 46 chr1 25845305 25845456 -216818897 + MIR SINE MIR 34 179 -83 572 165 18 37 chr1 25845526 25845635 -216818718 + MER5A DNA MER1_type 2 108 -81 2232 116 3 3 chr1 25845637 25845947 -216818406 - AluSx SINE Alu -2 310 1 1673 154 57 6 chr1 25845966 25846284 -216818069 - L1MB7 LINE L1 -24 6160 5827 22 70 0 0 chr1 25846327 25846370 -216817983 + AT_rich Low_complexity Low_complexity 1 43 0 2393 154 8 3 chr1 25846381 25846771 -216817582 - L1MC1 LINE L1 -17 6316 5925 1645 203 54 44 chr1 25846773 25847069 -216817284 - MSTD LTR MaLR -2 394 92 1962 176 3 0 chr1 25847069 25847375 -216816978 - AluJo SINE Alu -5 307 1 1645 203 54 44 chr1 25847375 25847468 -216816885 - MSTD LTR MaLR -304 92 1 7589 214 55 32 chr1 25847468 25849162 -216815191 - MSTD-int LTR MaLR 0 1735 2 268 83 0 0 chr1 25849164 25849200 -216815153 - MSTD LTR MaLR -17 379 344 222 156 62 0 chr1 25849200 25849264 -216815089 + (TA)n Simple_repeat Simple_repeat 1 68 0 1212 227 62 10 chr1 25849277 25849585 -216814768 - MSTD LTR MaLR -72 324 1 9339 198 26 32 chr1 25849585 25852813 -216811540 - L1MC1 LINE L1 -404 5929 2722 603 136 3 1 chr1 25852816 25852934 -216811419 - L1MB7 LINE L1 -325 5826 5707 2980 173 45 64 chr1 25852942 25853929 -216810424 - L1MB5 LINE L1 -53 6120 5116 2148 149 0 0 chr1 25853929 25854237 -216810116 - AluJb SINE Alu -4 308 1 1465 158 0 29 chr1 25854240 25854481 -216809872 - AluJo SINE Alu 0 312 79 1897 122 59 24 chr1 25854486 25854774 -216809579 - AluSq SINE Alu -13 300 3 2980 173 45 64 chr1 25854774 25854845 -216809508 - L1MB5 LINE L1 -973 5200 5129 1995 183 59 7 chr1 25855537 25855959 -216808394 - MLT1C LTR MaLR 0 467 24 498 136 0 0 chr1 25856150 25856231 -216808122 + (CA)n Simple_repeat Simple_repeat 2 82 0 2191 115 3 6 chr1 25856296 25856610 -216807743 + AluSq SINE Alu 1 313 0 546 279 164 4 chr1 25856626 25856852 -216807501 + LTR16A1 LTR ERVL 196 457 0 200 289 0 0 chr1 25857022 25857074 -216807279 + L2 LINE L2 3019 3070 -243 1438 314 80 34 chr1 25857192 25857393 -216806960 - ERVL LTR ERVL -2071 3693 3503 3433 77 11 17 chr1 25857393 25857906 -216806447 - L1PA10 LINE L1 0 6168 5707 1438 314 80 34 chr1 25857906 25858353 -216806000 - ERVL LTR ERVL -2261 3503 3015 931 230 167 34 chr1 25858366 25858744 -216805609 - MLT1D LTR MaLR -47 458 31 438 306 14 57 chr1 25858777 25858937 -216805416 - ERVL LTR ERVL -2039 2957 2805 2085 110 0 0 chr1 25858937 25859238 -216805115 - AluSx SINE Alu 0 301 1 438 306 14 57 chr1 25859238 25859285 -216805068 - ERVL LTR ERVL -2191 2805 2758 868 249 109 28 chr1 25859423 25859780 -216804573 + LTR16A1 LTR ERVL 70 455 -2 2211 100 68 31 chr1 25859791 25860142 -216804211 - THE1B LTR MaLR 0 364 1 8379 91 30 32 chr1 25860142 25861466 -216802887 - THE1B-int LTR MaLR 0 1580 260 475 111 0 0 chr1 25861466 25861538 -216802815 + THE1B LTR MaLR 224 295 -69 528 328 54 4 chr1 25861540 25861781 -216802572 - ERVL LTR ERVL -2327 2669 2417 779 294 74 11 chr1 25861782 25862051 -216802302 + L2 LINE L2 3027 3312 -1 225 0 0 0 chr1 25862427 25862452 -216801901 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2150 110 0 0 chr1 25863242 25863544 -216800809 - AluSx SINE Alu 0 302 1 382 217 130 17 chr1 25863544 25863659 -216800694 + MIR SINE MIR 114 241 -21 192 40 0 0 chr1 25863662 25863687 -216800666 + (TTA)n Simple_repeat Simple_repeat 2 26 0 243 296 49 12 chr1 25863696 25863777 -216800576 - L2 LINE L2 -189 3083 3000 270 282 35 53 chr1 25863967 25864194 -216800159 + L1ME4a LINE L1 5895 6117 -4 1488 160 94 14 chr1 25864205 25864480 -216799873 + AluJo SINE Alu 3 299 -13 250 259 56 83 chr1 25867606 25867714 -216796639 + MIR3 SINE MIR 50 154 -54 261 75 0 0 chr1 25869661 25869701 -216794652 + (T)n Simple_repeat Simple_repeat 1 40 0 369 263 111 47 chr1 25872210 25872381 -216791972 - MIR3 SINE MIR -2 206 25 659 271 152 0 chr1 25872408 25872618 -216791735 + MIR SINE MIR 2 243 -19 560 235 39 20 chr1 25873880 25874033 -216790320 - MIR SINE MIR -85 177 22 201 261 0 0 chr1 25875173 25875219 -216789134 - L2 LINE L2 -4 3309 3264 1560 153 10 67 chr1 25877013 25877326 -216787027 + AluJo SINE Alu 1 295 -17 234 231 77 0 chr1 25878116 25878168 -216786185 + MIR SINE MIR 119 174 -88 236 346 10 50 chr1 25878536 25878637 -216785716 - MIR SINE MIR -61 147 51 2345 78 3 13 chr1 25878652 25878958 -216785395 + AluSx SINE Alu 1 303 -9 183 394 121 38 chr1 25879203 25879518 -216784835 + L3 LINE CR1 185 525 -1052 328 294 144 0 chr1 25879521 25879681 -216784672 - MER102a DNA MER1_type -2 328 146 294 365 79 0 chr1 25879840 25879966 -216784387 + L3 LINE CR1 878 1013 -564 184 319 43 60 chr1 25880026 25880142 -216784211 + MIR SINE MIR 20 133 -129 204 370 58 7 chr1 25880245 25880383 -216783970 - MIR SINE MIR -98 164 20 281 348 84 7 chr1 25881245 25881400 -216782953 - MIR SINE MIR -15 247 81 262 286 36 12 chr1 25881696 25881780 -216782573 + MIR SINE MIR 96 181 -81 310 297 62 16 chr1 25882008 25882136 -216782217 + MIR SINE MIR 62 195 -67 322 316 168 16 chr1 25882537 25882727 -216781626 - MIR SINE MIR 0 262 44 389 260 136 12 chr1 25883504 25883673 -216780680 + L2 LINE L2 2990 3179 -134 * 744 294 67 68 chr1 25883659 25883790 -216780563 - L2 LINE L2 0 3313 3183 2320 96 0 0 chr1 25883790 25884093 -216780260 + AluSx SINE Alu 1 303 -9 744 294 67 68 chr1 25884093 25884457 -216779896 - L2 LINE L2 -130 3183 2819 211 238 48 0 chr1 25884535 25884598 -216779755 + MER5A DNA MER1_type 120 185 -4 264 317 24 0 chr1 25884929 25885011 -216779342 - MIR SINE MIR -68 194 111 253 242 121 11 chr1 25885212 25885303 -216779050 - MIR SINE MIR -60 148 48 367 227 52 58 chr1 25886164 25886319 -216778034 - MIR3 SINE MIR -65 143 8 * 489 281 52 0 chr1 25886291 25886426 -216777927 - MIR SINE MIR -48 214 73 254 270 45 11 chr1 25886493 25886582 -216777771 - MIR3 SINE MIR -36 172 81 330 91 0 0 chr1 25887214 25887269 -216777084 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 784 286 70 22 chr1 25888329 25888700 -216775653 - L1ME4a LINE L1 -12 6109 5721 336 265 0 0 chr1 25888871 25888969 -216775384 - L1ME4a LINE L1 -392 5729 5632 238 217 167 0 chr1 25890530 25890590 -216773763 + L2 LINE L2 3003 3072 -241 1184 131 16 0 chr1 25890593 25890776 -216773577 - AluJ SINE Alu -6 306 121 257 92 31 46 chr1 25890777 25890842 -216773511 + CT-rich Low_complexity Low_complexity 3 66 0 777 152 48 0 chr1 25890842 25890967 -216773386 - AluJ SINE Alu -169 133 3 1823 186 67 19 chr1 25890968 25891446 -216772907 + Charlie4a DNA MER1_type 2 502 -6 491 322 95 12 chr1 25891459 25891701 -216772652 + L2 LINE L2 3051 3312 -1 791 249 152 38 chr1 25892696 25892733 -216771620 + MER20B DNA MER1_type 213 244 -539 1718 143 53 33 chr1 25892733 25893033 -216771320 + AluJb SINE Alu 1 306 -6 791 249 152 38 chr1 25893033 25893496 -216770857 + MER20B DNA MER1_type 244 770 -13 205 241 0 35 chr1 25893989 25894047 -216770306 - MIR3 SINE MIR -1 207 152 950 249 57 0 chr1 25894066 25894295 -216770058 - MIR SINE MIR -3 259 18 21 57 0 0 chr1 25898366 25898401 -216765952 + GC_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr1 25898562 25898589 -216765764 + GC_rich Low_complexity Low_complexity 1 27 0 23 68 0 0 chr1 25898628 25898672 -216765681 + GC_rich Low_complexity Low_complexity 1 44 0 28 111 0 0 chr1 25898753 25898879 -216765474 + GC_rich Low_complexity Low_complexity 1 126 0 27 0 0 0 chr1 25898922 25898949 -216765404 + GC_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr1 25898955 25898979 -216765374 + GC_rich Low_complexity Low_complexity 1 24 0 416 221 213 8 chr1 25901907 25902034 -216762319 + MIR SINE MIR 90 242 -20 194 184 0 0 chr1 25902639 25902677 -216761676 + MIR SINE MIR 109 146 -62 217 278 258 20 chr1 25903202 25903353 -216761000 - MIR SINE MIR -16 246 60 293 278 19 37 chr1 25903634 25903742 -216760611 - MIR SINE MIR -70 192 87 241 351 126 0 chr1 25904388 25904539 -216759814 - MIR SINE MIR 0 262 93 745 298 19 9 chr1 25904842 25905057 -216759296 - MIR SINE MIR -43 219 3 423 248 62 16 chr1 25905140 25905269 -216759084 - MIR3 SINE MIR -8 200 66 991 193 11 0 chr1 25905849 25906025 -216758328 + MER45A DNA AcHobo 1 178 0 236 243 225 18 chr1 25906174 25906285 -216758068 - MIR SINE MIR -127 135 2 392 289 8 23 chr1 25906832 25906960 -216757393 + MIR3 SINE MIR 78 203 -5 319 301 21 4 chr1 25906973 25907117 -216757236 - MIR3 SINE MIR -58 150 14 1386 199 60 71 chr1 25907260 25907627 -216756726 + MLT1A1 LTR MaLR 3 365 0 216 290 0 28 chr1 25907846 25907953 -216756400 + (CA)n Simple_repeat Simple_repeat 1 104 0 441 297 55 11 chr1 25908637 25908819 -216755534 + L3 LINE CR1 1145 1334 -243 304 218 163 60 chr1 25908988 25909137 -216755216 + MIR SINE MIR 21 182 -26 720 199 0 22 chr1 25909261 25909397 -216754956 + FLAM_A SINE Alu 1 133 0 460 279 25 32 chr1 25910081 25910239 -216754114 - MIR SINE MIR -74 188 32 610 248 60 85 chr1 25910892 25911223 -216753130 - L2 LINE L2 0 3313 2991 561 260 62 0 chr1 25912029 25912206 -216752147 - MIR SINE MIR -3 259 72 247 304 14 0 chr1 25912487 25912556 -216751797 - L3b LINE CR1 -198 1385 1316 966 249 151 37 chr1 25912853 25913084 -216751269 + L2 LINE L2 2804 3007 -306 2304 176 13 71 chr1 25913084 25913618 -216750735 + MLT1D LTR MaLR 1 503 -2 966 249 151 37 chr1 25913618 25913769 -216750584 + L2 LINE L2 3007 3139 -174 672 185 154 6 chr1 25913769 25913931 -216750422 + MER53 DNA DNA 1 186 -3 966 249 151 37 chr1 25913931 25914004 -216750349 + L2 LINE L2 3139 3312 -1 749 239 80 5 chr1 25914099 25914300 -216750053 - MIR SINE MIR -1 261 46 411 98 0 0 chr1 25914693 25914754 -216749599 + (TGAA)n Simple_repeat Simple_repeat 2 62 0 200 239 0 0 chr1 25914764 25914810 -216749543 + MIR SINE MIR 108 153 -109 524 219 92 0 chr1 25914845 25915009 -216749344 - L1ME4a LINE L1 -1 6120 5942 226 316 176 7 chr1 25915249 25915385 -216748968 - L1ME4a LINE L1 -359 5762 5604 224 263 40 53 chr1 25915744 25915820 -216748533 - MIR SINE MIR -79 183 109 181 304 65 0 chr1 25916594 25916686 -216747667 + MIR3 SINE MIR 86 183 -25 508 234 133 6 chr1 25917807 25917965 -216746388 - MIR SINE MIR -48 214 37 233 291 18 73 chr1 25918044 25918154 -216746199 - L2 LINE L2 0 3272 3169 900 223 165 5 chr1 25918745 25918969 -216745384 - MER45C DNA AcHobo 0 953 694 706 202 93 26 chr1 25919009 25919202 -216745151 - MER45C DNA AcHobo -685 268 63 2206 110 0 0 chr1 25919574 25919875 -216744478 + AluSc SINE Alu 1 301 -8 248 235 148 3 chr1 25920115 25920199 -216744154 - MIR SINE MIR -63 145 61 509 224 35 0 chr1 25920409 25920525 -216743828 + MIR SINE MIR 77 196 -66 528 206 9 0 chr1 25920530 25920637 -216743716 + AluJb SINE Alu 195 302 -10 192 250 16 16 chr1 25920637 25920701 -216743652 + MIR SINE MIR 189 252 -10 369 206 20 20 chr1 25921039 25921141 -216743212 - MER103 DNA DNA -61 105 4 524 279 117 11 chr1 25921330 25921509 -216742844 - MIR SINE MIR -43 219 22 183 154 0 0 chr1 25921719 25921733 -216742620 + A-rich Low_complexity Low_complexity 1 14 -25 2362 65 7 0 chr1 25921733 25922042 -216742311 + AluY SINE Alu 1 311 0 183 154 0 0 chr1 25922042 25922066 -216742287 + A-rich Low_complexity Low_complexity 13 39 0 825 227 61 9 chr1 25922076 25922293 -216742060 - MER3 DNA MER1_type -84 125 1 1136 165 110 28 chr1 25922329 25922547 -216741806 + MER46A DNA MER2_type 1 236 0 958 161 0 0 chr1 25922567 25922722 -216741631 - FRAM SINE Alu -18 158 4 300 171 49 37 chr1 25922820 25922902 -216741451 + L1ME4a LINE L1 5966 6048 -73 857 195 0 0 chr1 25923118 25923267 -216741086 + MER45A DNA AcHobo 24 172 -6 225 333 100 0 chr1 25924053 25924173 -216740180 + MIR SINE MIR 95 226 -36 268 269 21 21 chr1 25924303 25924396 -216739957 + MIR3 SINE MIR 63 155 -53 537 223 16 16 chr1 25924450 25924571 -216739782 + L2 LINE L2 3189 3309 -4 199 238 0 0 chr1 25924672 25924714 -216739639 - L2 LINE L2 -13 3259 3218 316 200 33 50 chr1 25924970 25925090 -216739263 - L1ME4a LINE L1 -40 6081 5964 225 301 21 11 chr1 25925955 25925972 -216738381 + LTR3b LTR ERVK 231 246 -191 456 67 0 0 chr1 25925972 25926032 -216738321 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 225 301 21 11 chr1 25926032 25926107 -216738246 + LTR3b LTR ERVK 246 324 -113 713 265 20 5 chr1 25926321 25926521 -216737832 - MIR SINE MIR 0 262 60 454 233 77 2 chr1 25926831 25926980 -216737373 - MIR SINE MIR -37 171 27 266 216 176 0 chr1 25927061 25927135 -216737218 + MIR3 SINE MIR 107 193 -15 226 146 42 21 chr1 25927311 25927359 -216736994 + CT-rich Low_complexity Low_complexity 1 49 0 449 183 24 0 chr1 25928190 25928272 -216736081 + MER81 DNA DNA 2 85 -29 403 318 101 62 chr1 25928544 25928899 -216735454 + L2 LINE L2 2886 3254 -18 541 275 203 0 chr1 25928902 25929109 -216735244 - MIR SINE MIR -10 252 4 310 197 15 0 chr1 25929429 25929495 -216734858 - MIR SINE MIR -60 148 82 231 333 0 46 chr1 25930106 25930214 -216734139 - MIR3 SINE MIR -40 168 66 330 300 10 18 chr1 25930240 25930365 -216733988 - MER5A DNA MER1_type 0 178 59 648 287 125 53 chr1 25930608 25931040 -216733313 + Charlie4a DNA MER1_type 13 475 -33 342 222 0 50 chr1 25932202 25932301 -216732052 - MIR SINE MIR -140 122 29 1504 146 0 80 chr1 25933404 25933706 -216730647 - AluSx SINE Alu -34 278 1 1752 231 5 39 chr1 25933706 25933890 -216730463 + L1PA15-16 LINE L1 2589 2778 -4806 1555 178 39 3 chr1 25933890 25934176 -216730177 + AluJb SINE Alu 1 296 -16 1752 231 5 39 chr1 25934176 25934588 -216729765 + L1PA15-16 LINE L1 2778 3172 -4412 356 101 29 0 chr1 25934588 25934657 -216729696 + AluSp/q SINE Alu 232 302 -1 329 132 0 0 chr1 25934658 25934711 -216729642 + L1PA15-16 LINE L1 3289 3341 -4243 23 0 0 0 chr1 25934812 25934835 -216729518 + AT_rich Low_complexity Low_complexity 1 23 0 48 18 0 0 chr1 25935074 25935129 -216729224 + AT_rich Low_complexity Low_complexity 1 55 0 811 160 100 0 chr1 25937093 25937243 -216727110 + L1PB4 LINE L1 5965 6129 -27 216 160 50 34 chr1 25937380 25937499 -216726854 + (TATAA)n Simple_repeat Simple_repeat 4 124 0 289 253 32 43 chr1 25937522 25937850 -216726503 + (TATAA)n Simple_repeat Simple_repeat 1 324 0 * 324 118 106 10 chr1 25937731 25938045 -216726308 + (TA)n Simple_repeat Simple_repeat 1 344 0 205 171 0 71 chr1 25938053 25938123 -216726230 + (TTATA)n Simple_repeat Simple_repeat 1 65 0 290 262 135 16 chr1 25938801 25938927 -216725426 - MIR3 SINE MIR -58 150 10 642 297 86 5 chr1 25939268 25939477 -216724876 + MIR SINE MIR 20 245 -17 21 0 0 0 chr1 25939618 25939639 -216724714 + AT_rich Low_complexity Low_complexity 1 21 0 1767 185 0 10 chr1 25939756 25940070 -216724283 - AluJo SINE Alu 0 312 2 961 272 152 5 chr1 25940294 25940662 -216723691 - LTR33A LTR ERVL -3 520 99 464 232 0 24 chr1 25940965 25941216 -216723137 + (CA)n Simple_repeat Simple_repeat 1 245 0 224 314 83 33 chr1 25941280 25941401 -216722952 - MIR SINE MIR -88 174 48 285 270 0 0 chr1 25942174 25942248 -216722105 + MIR SINE MIR 49 122 -86 194 174 22 0 chr1 25943356 25943402 -216720951 + GA-rich Low_complexity Low_complexity 2 48 0 219 222 0 0 chr1 25943971 25944025 -216720328 + L2 LINE L2 2917 2970 -302 264 300 75 17 chr1 25944189 25944309 -216720044 - MIR3 SINE MIR -52 156 30 456 279 22 15 chr1 25944707 25944843 -216719510 + MIR SINE MIR 15 151 -111 571 272 22 14 chr1 25944995 25945165 -216719188 - MLT1I LTR MaLR -197 223 59 414 309 174 41 chr1 25945325 25945687 -216718666 + L2 LINE L2 2903 3312 -1 193 303 79 0 chr1 25945954 25946030 -216718323 - MIR SINE MIR -89 173 92 1546 255 108 15 chr1 25946155 25946617 -216717736 + MLT1D LTR MaLR 1 505 0 347 347 40 7 chr1 25946910 25947060 -216717293 - MIR3 SINE MIR -26 182 28 338 233 138 35 chr1 25947239 25947355 -216716998 + MIR3 SINE MIR 58 185 -23 461 250 153 14 chr1 25948850 25948994 -216715359 - MER103 DNA DNA -1 165 2 303 215 65 47 chr1 25949201 25949308 -216715045 - MLT1G1 LTR MaLR -442 153 45 187 283 19 0 chr1 25949674 25949727 -216714626 - L2 LINE L2 -11 3302 3249 732 273 230 20 chr1 25949916 25950407 -216713946 + MLT1G1 LTR MaLR 2 595 0 933 169 36 0 chr1 25950648 25950843 -216713510 + L1MC3 LINE L1 7574 7775 -10 375 239 71 77 chr1 25950953 25951108 -216713245 - MIR3 SINE MIR -39 169 16 413 260 86 10 chr1 25951113 25951304 -216713049 + MIR3 SINE MIR 11 212 -50 478 264 44 6 chr1 25951657 25951816 -216712537 + LTR33 LTR ERVL 1 165 -356 302 227 109 25 chr1 25951836 25951955 -216712398 - MIR3 SINE MIR -10 198 70 741 260 73 10 chr1 25952240 25952444 -216711909 + MIR SINE MIR 30 246 -16 185 246 46 0 chr1 25952480 25952545 -216711808 - MIR3 SINE MIR -25 183 116 266 316 129 97 chr1 25952807 25953085 -216711268 - L2 LINE L2 -3 3269 2983 700 313 110 14 chr1 25953090 25953534 -216710819 - L2 LINE L2 0 3313 2827 220 347 32 0 chr1 25953949 25954044 -216710309 + MIR SINE MIR 36 133 -75 25 0 0 0 chr1 25954670 25954695 -216709658 + GC_rich Low_complexity Low_complexity 1 25 0 454 204 63 56 chr1 25955212 25955354 -216708999 + MIR3 SINE MIR 3 145 -63 307 287 21 11 chr1 25955411 25955505 -216708848 - MIR3 SINE MIR -26 182 88 475 303 0 0 chr1 25955792 25955914 -216708439 - MIR3 SINE MIR -5 203 82 2292 104 7 7 chr1 25956565 25956874 -216707479 - AluSg SINE Alu -1 309 1 281 298 12 12 chr1 25957431 25957515 -216706838 - MER5A DNA MER1_type -32 157 74 1364 183 0 0 chr1 25957797 25958010 -216706343 + AluSg/x SINE Alu 85 297 -15 907 278 66 66 chr1 25958453 25958920 -216705433 - MLT1J LTR MaLR 0 511 45 342 301 24 24 chr1 25958945 25959068 -216705285 - L3 LINE CR1 -193 1384 1262 362 236 31 8 chr1 25959328 25959455 -216704898 - L2 LINE L2 -217 3055 2926 429 198 0 12 chr1 25960779 25960860 -216703493 + MER20 DNA MER1_type 1 80 -139 1711 98 0 0 chr1 25961572 25961787 -216702566 + AluY SINE Alu 1 215 -96 1523 255 83 43 chr1 25961980 25962484 -216701869 - L1M4 LINE L1 -1336 4810 4327 2244 104 17 0 chr1 25962484 25962773 -216701580 - AluSp SINE Alu -19 294 1 1523 255 83 43 chr1 25962773 25962876 -216701477 - L1M4 LINE L1 -1819 4327 4230 690 181 0 30 chr1 25962876 25963009 -216701344 - FLAM_C SINE Alu -4 129 1 1523 255 83 43 chr1 25963009 25963369 -216700984 - L1M4 LINE L1 -1916 4230 3804 250 212 24 123 chr1 25963397 25963489 -216700864 - L1M4 LINE L1 -2726 3420 3351 2169 122 14 0 chr1 25963489 25963784 -216700569 - AluSq SINE Alu -14 299 1 250 212 24 123 chr1 25963784 25963861 -216700492 - L1M4 LINE L1 -2795 3351 3268 271 298 0 65 chr1 25964408 25964532 -216699821 + MIR SINE MIR 100 215 -47 353 283 74 24 chr1 25964810 25965192 -216699161 - L1MC3 LINE L1 -221 5949 5597 1883 188 78 32 chr1 25965212 25965675 -216698678 - MLT1D LTR MaLR 0 505 22 2143 108 11 0 chr1 25965827 25966128 -216698225 - AluSx SINE Alu 0 304 1 331 195 77 16 chr1 25966148 25966313 -216698040 - L1MD2 LINE L1 -16 6343 6070 726 78 0 0 chr1 25966964 25967066 -216697287 + (TTCC)n Simple_repeat Simple_repeat 4 105 0 364 288 23 15 chr1 25967496 25967628 -216696725 - MIR3 SINE MIR -17 191 59 213 233 93 47 chr1 25967743 25967829 -216696524 - MIR SINE MIR -57 151 62 338 276 22 67 chr1 25967974 25968061 -216696292 - MIR SINE MIR -61 147 67 1597 181 9 55 chr1 25968061 25968386 -216695967 - AluJb SINE Alu 0 312 3 338 276 22 67 chr1 25968386 25968432 -216695921 - MIR SINE MIR -141 67 20 401 289 25 8 chr1 25969610 25969731 -216694622 + MIR SINE MIR 49 171 -91 268 288 76 25 chr1 25969856 25969974 -216694379 + MIR3 SINE MIR 11 134 -74 190 363 0 11 chr1 25970053 25970144 -216694209 + MIR SINE MIR 8 97 -165 419 255 7 40 chr1 25970353 25970502 -216693851 - L2 LINE L2 -218 3054 2911 1550 212 21 16 chr1 25970622 25970994 -216693359 - MLT1A2 LTR MaLR 0 374 1 262 263 192 0 chr1 25971063 25971162 -216693191 + L2 LINE L2 3150 3267 -5 829 279 43 23 chr1 25971304 25971609 -216692744 - L2 LINE L2 0 3313 3003 2309 229 62 9 chr1 25971610 25971671 -216692682 + MLT1F1 LTR MaLR 3 59 -508 2286 128 0 0 chr1 25971671 25971976 -216692377 + AluSx SINE Alu 1 305 -7 2309 229 62 9 chr1 25971976 25972446 -216691907 + MLT1F1 LTR MaLR 59 562 -5 217 234 68 0 chr1 25972668 25972736 -216691617 - MIR SINE MIR -87 121 49 215 343 38 9 chr1 25972769 25972874 -216691479 + MER5A DNA MER1_type 64 171 -18 222 256 0 39 chr1 25972945 25973023 -216691330 + L2 LINE L2 2985 3059 -213 464 228 0 24 chr1 25973493 25973744 -216690609 + (TG)n Simple_repeat Simple_repeat 1 245 0 474 251 22 25 chr1 25974460 25974639 -216689714 - MIR SINE MIR 0 262 41 298 326 37 22 chr1 25974646 25974781 -216689572 - MIR SINE MIR -105 157 21 288 305 21 0 chr1 25974944 25975039 -216689314 - MIR SINE MIR -116 146 50 249 305 162 9 chr1 25975554 25975659 -216688694 - MIR SINE MIR -71 137 17 242 300 25 0 chr1 25975667 25975747 -216688606 + MIR SINE MIR 65 146 -62 1028 258 81 32 chr1 25975758 25976130 -216688223 - LTR16C LTR ERVL 0 491 102 73 12 0 0 chr1 25976177 25976257 -216688096 + AT_rich Low_complexity Low_complexity 1 80 0 1513 166 33 44 chr1 25976263 25976534 -216687819 - AluJb SINE Alu -44 268 1 5788 239 109 40 chr1 25976896 25977405 -216686948 - HAL1 LINE L1 0 2507 2035 1801 148 7 22 chr1 25977405 25977676 -216686677 + AluJb SINE Alu 1 267 -45 441 0 0 0 chr1 25977683 25977732 -216686621 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 5788 239 109 40 chr1 25977732 25979469 -216684884 - HAL1 LINE L1 -477 2030 96 332 280 5 83 chr1 25979617 25979746 -216684607 + L1M4 LINE L1 4531 4643 -1503 1741 164 36 0 chr1 25979746 25980043 -216684310 + AluSx SINE Alu 1 307 0 332 280 5 83 chr1 25980043 25980105 -216684248 + L1M4 LINE L1 4643 4708 -1438 2024 157 0 0 chr1 25980106 25980435 -216683918 + AluJb SINE Alu 1 329 0 2576 192 72 25 chr1 25980435 25981004 -216683349 + LTR48B LTR ERV1 30 625 -19 374 276 179 8 chr1 25981390 25981513 -216682840 + L2 LINE L2 3125 3268 -4 604 326 103 39 chr1 25981609 25981747 -216682606 - L2 LINE L2 -1 3271 3143 2331 118 28 3 chr1 25981747 25982102 -216682251 + THE1B LTR MaLR 1 364 0 604 326 103 39 chr1 25982102 25982399 -216681954 - L2 LINE L2 -129 3143 2808 703 185 0 8 chr1 25982645 25982775 -216681578 - FLAM_C SINE Alu 0 133 5 572 225 18 77 chr1 25982930 25983347 -216681006 + MLT1D LTR MaLR 12 458 -9 306 286 134 17 chr1 25983536 25983655 -216680698 + MIR SINE MIR 37 169 -93 239 264 55 11 chr1 25983714 25983805 -216680548 + MIR SINE MIR 21 115 -147 183 256 0 90 chr1 25984282 25984360 -216679993 - MIR SINE MIR -79 183 113 253 241 12 48 chr1 25984554 25984637 -216679716 - L1ME4a LINE L1 -65 6056 5977 725 274 102 12 chr1 25985368 25985700 -216678653 - L2 LINE L2 -14 3299 2938 350 175 125 0 chr1 25985873 25985953 -216678400 + MER53 DNA DNA 94 183 -6 206 310 67 54 chr1 25986050 25986289 -216678064 - L2 LINE L2 -557 2757 2516 198 360 81 0 chr1 25987001 25987187 -216677166 - L2 LINE L2 -2879 435 235 310 314 59 13 chr1 25988072 25988225 -216676128 + L2 LINE L2 2904 3063 -209 183 174 43 101 chr1 25988268 25988337 -216676016 + L2 LINE L2 3200 3264 -8 302 332 62 41 chr1 25988357 25988601 -216675752 - MIR SINE MIR -6 256 8 2259 149 6 3 chr1 25988918 25989280 -216675073 + MLT2D LTR ERVL 3 365 -49 874 241 21 25 chr1 25989285 25989522 -216674831 - MLT1K LTR MaLR -159 429 194 660 255 116 14 chr1 25989799 25990015 -216674338 - L3 LINE CR1 -30 1547 1310 431 316 102 5 chr1 25990124 25990320 -216674033 - MIR SINE MIR -36 226 12 295 293 26 17 chr1 25990329 25990445 -216673908 - L3 LINE CR1 -383 1194 1078 1450 259 64 97 chr1 25990446 25991053 -216673300 - MLT1K LTR MaLR 0 588 2 201 345 12 0 chr1 25991124 25991208 -216673145 - L3 LINE CR1 -548 1029 945 490 246 41 16 chr1 25991329 25991451 -216672902 + L2 LINE L2 3189 3313 0 1521 254 108 32 chr1 25991522 25991928 -216672425 - L2 LINE L2 -90 3223 2849 1822 158 3 31 chr1 25991928 25992245 -216672108 - AluJb SINE Alu -4 308 1 1521 254 108 32 chr1 25992245 25992760 -216671593 - L2 LINE L2 -464 2849 2241 257 315 54 2 chr1 25992877 25992992 -216671361 - MIR SINE MIR -63 145 54 840 283 29 22 chr1 25993110 25993421 -216670932 - MLT1K LTR MaLR -68 520 208 247 274 20 0 chr1 25993792 25993894 -216670459 + L2 LINE L2 2866 2969 -303 272 276 197 0 chr1 25993955 25994082 -216670271 + L2 LINE L2 3121 3272 0 457 300 29 0 chr1 25994618 25994758 -216669595 - MIR SINE MIR -73 189 46 216 0 0 0 chr1 25994799 25994823 -216669530 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 506 176 63 75 chr1 25994823 25994982 -216669371 + MER63A DNA MER1_type 54 210 0 422 264 72 31 chr1 25995738 25995931 -216668422 + MIR SINE MIR 47 247 -15 913 229 21 0 chr1 25996055 25996247 -216668106 + MIR SINE MIR 67 262 0 254 271 58 52 chr1 25996589 25996744 -216667609 + MLT1K LTR MaLR 100 255 -333 258 284 40 14 chr1 25996847 25996921 -216667432 + MIR SINE MIR 36 111 -97 277 260 260 8 chr1 25997007 25997130 -216667223 - MIR SINE MIR -96 166 13 308 281 22 0 chr1 25997252 25997341 -216667012 + MIR SINE MIR 58 148 -60 200 275 199 0 chr1 25997963 25998094 -216666259 + MIR3 SINE MIR 30 186 -22 200 259 74 49 chr1 25998558 25998639 -216665714 + MIR3 SINE MIR 111 193 -15 202 342 112 0 chr1 25998945 25999097 -216665256 + L2 LINE L2 2870 3038 -234 403 261 33 20 chr1 25999595 25999748 -216664605 + (GGTTG)n Simple_repeat Simple_repeat 1 155 0 328 175 36 119 chr1 25999787 25999981 -216664372 + (GGTTG)n Simple_repeat Simple_repeat 2 179 0 213 39 0 0 chr1 26000684 26000710 -216663643 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2979 16 0 0 chr1 26000718 26001036 -216663317 - AluYb8 SINE Alu 0 318 1 324 371 14 7 chr1 26001429 26001572 -216662781 - MIR3 SINE MIR -31 177 34 300 200 43 0 chr1 26001610 26001680 -216662673 + MIR SINE MIR 58 130 -78 1062 182 34 5 chr1 26001686 26001895 -216662458 + MER20 DNA MER1_type 1 215 -4 591 178 19 0 chr1 26001905 26002012 -216662341 + MER81 DNA DNA 6 114 0 307 276 65 24 chr1 26002465 26002588 -216661765 + L2 LINE L2 3144 3271 -1 2335 85 3 23 chr1 26002859 26003164 -216661189 - AluSx SINE Alu -13 299 1 418 226 52 9 chr1 26003231 26003346 -216661007 + MIR SINE MIR 65 184 -78 205 171 0 71 chr1 26004378 26004448 -216659905 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 293 88 113 6 chr1 26004456 26004616 -216659737 + (TA)n Simple_repeat Simple_repeat 1 177 0 249 235 45 45 chr1 26004628 26004807 -216659546 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 295 286 28 34 chr1 26004747 26004925 -216659428 + (TTACG)n Simple_repeat Simple_repeat 3 179 0 307 279 89 95 chr1 26004979 26005067 -216659286 - L1MC5 LINE L1 -204 7757 7670 249 169 41 29 chr1 26005067 26005239 -216659114 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 307 279 89 95 chr1 26005239 26005327 -216659026 - L1MC5 LINE L1 -291 7670 7412 262 339 120 6 chr1 26005861 26006044 -216658309 - MER113 DNA MER1_type? -83 438 235 1153 208 115 91 chr1 26006076 26006585 -216657768 + MLT1E3 LTR MaLR 45 622 -2 1852 89 0 0 chr1 26006601 26006837 -216657516 - AluSx SINE Alu -76 236 1 1297 258 120 34 chr1 26006922 26007430 -216656923 + MLT1H1 LTR MaLR 1 552 -3 185 302 0 0 chr1 26007577 26007620 -216656733 - L2 LINE L2 -11 3261 3219 182 200 0 25 chr1 26007723 26007763 -216656590 + L2 LINE L2 3270 3308 -5 262 233 233 0 chr1 26007795 26007898 -216656455 - L2 LINE L2 -1 3271 3145 485 278 148 22 chr1 26007999 26008229 -216656124 - MIR SINE MIR -2 260 2 180 380 85 8 chr1 26009454 26009583 -216654770 - L2 LINE L2 -1 3271 3133 255 339 150 22 chr1 26009696 26009923 -216654430 - L2 LINE L2 -339 2975 2720 1679 177 34 0 chr1 26009971 26010265 -216654088 - AluJb SINE Alu -8 304 1 1949 102 11 0 chr1 26010274 26010565 -216653788 - AluSc SINE Alu 0 313 20 285 308 0 13 chr1 26010815 26010893 -216653460 - MIR SINE MIR -107 155 79 2210 197 30 17 chr1 26012577 26013050 -216651303 + MLT1F LTR MaLR 57 535 -7 1657 188 48 24 chr1 26013118 26013221 -216651132 + LTR37B LTR ERV1 1 100 -368 2254 144 55 0 chr1 26013221 26013567 -216650786 + MLT1A1 LTR MaLR 1 365 0 1657 188 48 24 chr1 26013567 26013920 -216650433 + LTR37B LTR ERV1 100 468 0 270 303 135 45 chr1 26013931 26014109 -216650244 - L3 LINE CR1 -126 1451 1258 21 0 0 0 chr1 26014170 26014191 -216650162 + AT_rich Low_complexity Low_complexity 1 21 0 187 403 0 0 chr1 26014751 26014823 -216649530 + L2 LINE L2 3140 3211 -61 771 175 19 25 chr1 26015436 26015596 -216648757 - MIR SINE MIR -75 187 29 519 294 87 0 chr1 26015670 26015854 -216648499 + MIR SINE MIR 46 245 -17 187 314 12 23 chr1 26016143 26016229 -216648124 + MIR SINE MIR 21 105 -157 237 299 119 60 chr1 26016277 26016411 -216647942 + MIR SINE MIR 117 258 -4 291 377 31 0 chr1 26016420 26016550 -216647803 - MIR SINE MIR -70 192 59 426 326 62 5 chr1 26017070 26017263 -216647090 - MIR SINE MIR -51 211 8 218 256 167 13 chr1 26017309 26017387 -216646966 + MER5B DNA MER1_type 1 90 -88 2047 130 16 0 chr1 26017408 26017743 -216646610 + AluSx SINE Alu 1 340 0 281 270 0 0 chr1 26017782 26017845 -216646508 - MIR SINE MIR -55 153 91 413 221 84 0 chr1 26018523 26018618 -216645735 + MIR3 SINE MIR 82 184 -24 2294 113 0 0 chr1 26018702 26019013 -216645340 + AluSx SINE Alu 1 311 -1 257 259 19 0 chr1 26019363 26019417 -216644936 + MIR SINE MIR 15 69 -193 235 318 91 23 chr1 26020318 26020450 -216643903 + MIR SINE MIR 6 146 -116 187 378 0 11 chr1 26020578 26020668 -216643685 - MIR3 SINE MIR -25 183 95 268 280 0 56 chr1 26020757 26020864 -216643489 + MIR3 SINE MIR 87 187 -21 492 255 76 0 chr1 26021452 26021609 -216642744 + MIR3 SINE MIR 2 170 -38 477 273 0 0 chr1 26022276 26022674 -216641679 + (CA)n Simple_repeat Simple_repeat 1 398 0 225 298 0 0 chr1 26022694 26022798 -216641555 + (CA)n Simple_repeat Simple_repeat 1 104 0 283 296 43 84 chr1 26023000 26023222 -216641131 - MIR SINE MIR -42 220 4 405 254 39 16 chr1 26024095 26024262 -216640091 + MER5A DNA MER1_type 6 178 0 271 130 22 0 chr1 26024443 26024489 -216639864 + MIR SINE MIR 81 127 -81 229 333 74 9 chr1 26025868 26025976 -216638377 + MIR SINE MIR 100 214 -48 727 231 61 106 chr1 26025993 26026257 -216638096 - MIR SINE MIR -10 252 1 597 306 56 37 chr1 26026303 26026651 -216637702 + L2 LINE L2 2915 3272 0 297 317 77 0 chr1 26028021 26028125 -216636228 + MIR3 SINE MIR 87 198 -10 276 271 59 0 chr1 26028212 26028297 -216636056 - MIR SINE MIR -81 127 38 393 320 39 0 chr1 26028503 26028659 -216635694 - MIR3 SINE MIR -35 173 11 888 161 0 7 chr1 26028684 26028833 -216635520 + FRAM SINE Alu 1 148 -28 180 0 0 0 chr1 26028833 26028853 -216635500 + (TAA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr1 26029247 26029270 -216635083 + AT_rich Low_complexity Low_complexity 1 23 0 447 324 43 0 chr1 26030069 26030208 -216634145 + MIR SINE MIR 12 156 -106 193 304 0 0 chr1 26032073 26032119 -216632234 + L2 LINE L2 3217 3262 -10 367 274 118 33 chr1 26032134 26032287 -216632066 + L1ME4a LINE L1 5926 6091 -30 557 307 118 13 chr1 26032535 26032763 -216631590 + MIR SINE MIR 8 259 -3 2200 127 0 6 chr1 26032774 26033088 -216631265 - AluSx SINE Alu 0 312 1 435 183 47 6 chr1 26033652 26034040 -216630313 + (TGGA)n Simple_repeat Simple_repeat 1 403 0 315 323 89 25 chr1 26034245 26034403 -216629950 - L2 LINE L2 -2 3270 3103 265 254 0 42 chr1 26034726 26034797 -216629556 + MIR3 SINE MIR 101 168 -40 * 443 325 9 0 chr1 26034793 26034907 -216629446 - MIR SINE MIR -1 261 147 446 240 91 26 chr1 26035655 26035809 -216628544 - MIR SINE MIR -92 170 7 192 211 211 0 chr1 26035960 26036031 -216628322 + L2 LINE L2 3170 3255 -17 325 293 38 47 chr1 26036259 26036365 -216627988 + MIR SINE MIR 20 124 -138 399 276 35 0 chr1 26036863 26036979 -216627374 + MIR SINE MIR 31 150 -58 181 278 111 0 chr1 26037060 26037132 -216627221 - MIR SINE MIR -124 138 59 288 276 67 9 chr1 26037139 26037244 -216627109 + MIR SINE MIR 20 130 -78 465 66 0 0 chr1 26037904 26037965 -216626388 + (TG)n Simple_repeat Simple_repeat 2 62 0 200 167 28 0 chr1 26038068 26038104 -216626249 - MIR SINE MIR -116 146 110 758 175 0 16 chr1 26038319 26038502 -216625851 + (CCA)n Simple_repeat Simple_repeat 1 180 0 248 242 20 0 chr1 26038504 26038603 -216625750 + (CACCAT)n Simple_repeat Simple_repeat 5 105 0 658 234 0 12 chr1 26038618 26039047 -216625306 + (CCA)n Simple_repeat Simple_repeat 1 423 0 982 260 14 5 chr1 26039365 26039588 -216624765 - MIR SINE MIR -37 225 1 452 266 35 0 chr1 26039649 26039762 -216624591 + L2 LINE L2 3197 3313 0 498 239 12 32 chr1 26039942 26040145 -216624208 - MIR SINE MIR -27 235 39 237 65 0 0 chr1 26040298 26040329 -216624024 + (CACCC)n Simple_repeat Simple_repeat 4 34 0 393 297 29 14 chr1 26040640 26040778 -216623575 - MIR SINE MIR -29 233 94 238 256 49 61 chr1 26040975 26041057 -216623296 - MIR SINE MIR 0 262 182 * 1119 222 92 35 chr1 26041045 26041414 -216622939 - L2 LINE L2 0 3313 2924 452 252 63 9 chr1 26041528 26041639 -216622714 - MIR SINE MIR -72 136 20 373 265 74 19 chr1 26042437 26042599 -216621754 - MIR3 SINE MIR -27 181 11 309 226 108 0 chr1 26042821 26042914 -216621439 + MIR SINE MIR 100 202 -60 878 238 94 28 chr1 26043079 26043398 -216620955 + LTR16C LTR ERVL 149 488 -3 378 291 165 11 chr1 26043401 26043583 -216620770 - MIR SINE MIR -49 213 4 497 286 26 0 chr1 26043738 26043892 -216620461 - L2 LINE L2 -230 3042 2885 24 0 0 0 chr1 26044102 26044126 -216620227 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr1 26044141 26044161 -216620192 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 303 264 73 39 chr1 26044176 26044354 -216619999 - L1 LINE L1 -1071 5075 4892 300 62 21 0 chr1 26044531 26044579 -216619774 - MER52C LTR ERV1 0 1278 1230 4576 229 85 50 chr1 26044584 26046045 -216618308 - MER52A LTR ERV1 -243 1512 1 1200 174 60 30 chr1 26046044 26046421 -216617932 - MLT1D LTR MaLR -3 502 85 * 1129 196 8 36 chr1 26046421 26046671 -216617682 - MLT1D-int LTR MaLR -141 1230 988 232 159 16 32 chr1 26046703 26046766 -216617587 + L1M4 LINE L1 4951 5012 -1134 * 972 227 97 14 chr1 26046765 26047043 -216617310 + L1ME1 LINE L1 5857 6157 -9 2119 91 0 55 chr1 26047043 26047351 -216617002 - AluSc SINE Alu -18 291 1 750 125 30 12 chr1 26047398 26047566 -216616787 + GA-rich Low_complexity Low_complexity 3 173 0 657 322 93 4 chr1 26048092 26048328 -216616025 + MIR SINE MIR 5 261 -1 323 258 54 0 chr1 26048745 26048838 -216615515 + MIR SINE MIR 56 153 -55 405 228 61 18 chr1 26048876 26048990 -216615363 - MIR SINE MIR -27 235 117 193 339 0 0 chr1 26049041 26049097 -216615256 - MIR SINE MIR -63 145 90 675 276 14 28 chr1 26049837 26050051 -216614302 - MIR SINE MIR -3 259 49 279 319 98 6 chr1 26051511 26051674 -216612679 - L1MC4a LINE L1 -1922 5886 5709 260 54 0 0 chr1 26051781 26051818 -216612535 + MER4A LTR ERV1 1 37 -627 326 345 36 7 chr1 26052852 26052991 -216611362 - MER5B DNA MER1_type 0 178 36 375 246 161 0 chr1 26053159 26053289 -216611064 - MER104 DNA Tc2 -26 154 4 327 371 117 26 chr1 26053387 26053816 -216610537 + L2 LINE L2 2825 3292 -21 423 314 104 36 chr1 26054243 26054463 -216609890 + MIR SINE MIR 18 252 -10 1333 221 32 50 chr1 26054971 26055351 -216609002 + MLT1A2 LTR MaLR 2 374 0 332 200 0 0 chr1 26055353 26055413 -216608940 + MIR SINE MIR 79 138 -124 240 345 125 30 chr1 26055960 26056192 -216608161 - MIR SINE MIR -1 261 8 769 171 6 11 chr1 26056759 26056940 -216607413 + CT-rich Low_complexity Low_complexity 1 180 0 249 108 0 0 chr1 26056970 26057007 -216607346 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 198 333 39 0 chr1 26057688 26057766 -216606587 + MIR SINE MIR 66 146 -62 340 239 55 18 chr1 26058303 26058412 -216605941 + MIR SINE MIR 33 145 -63 457 250 17 50 chr1 26058412 26058592 -216605761 - LTR16B LTR ERVL 0 464 291 539 279 120 5 chr1 26059538 26059742 -216604611 - MIR SINE MIR -4 258 37 250 267 70 0 chr1 26059848 26059934 -216604419 - MIR SINE MIR -112 150 59 16794 32 0 0 chr1 26060707 26063576 -216600777 + L1PA3 LINE L1 3264 6153 -2 729 191 62 6 chr1 26063624 26063786 -216600567 + MIR SINE MIR 61 231 -31 234 290 0 14 chr1 26063812 26063881 -216600472 - L1MC/D LINE L1 -2166 5642 5575 296 207 0 0 chr1 26064380 26064438 -216599915 + MER96 DNA MER1_type? 115 172 -3 283 219 0 61 chr1 26064440 26064522 -216599831 + MIR SINE MIR 116 192 -70 216 67 0 0 chr1 26064689 26064719 -216599634 + (TG)n Simple_repeat Simple_repeat 2 31 0 272 233 0 78 chr1 26065074 26065177 -216599176 - MIR SINE MIR -80 182 88 2223 115 3 3 chr1 26065777 26066089 -216598264 + AluSq SINE Alu 1 312 -1 241 310 26 35 chr1 26066127 26066240 -216598113 - MIR SINE MIR -33 229 118 991 286 85 24 chr1 26066241 26066699 -216597654 - LTR16C LTR ERVL -2 489 4 358 258 22 0 chr1 26066701 26066790 -216597563 - MIR SINE MIR -84 124 34 369 0 0 0 chr1 26067076 26067117 -216597236 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 451 284 0 68 chr1 26067223 26067413 -216596940 + Charlie8 DNA MER1_type 4 180 -2237 384 253 63 32 chr1 26067543 26067701 -216596652 + MIR3 SINE MIR 22 184 -24 190 360 50 0 chr1 26069162 26069262 -216595091 - MIR SINE MIR -113 149 45 265 317 5 54 chr1 26070477 26070663 -216593690 + C-rich Low_complexity Low_complexity 4 180 0 * 381 337 12 6 chr1 26070564 26070733 -216593620 + CT-rich Low_complexity Low_complexity 3 172 0 946 264 31 56 chr1 26071019 26071240 -216593113 + L1ME LINE L1 529 754 -5247 1905 152 0 14 chr1 26071240 26071557 -216592796 + AluSq SINE Alu 1 313 0 946 264 31 56 chr1 26071557 26071826 -216592527 + L1ME LINE L1 754 1456 -4545 351 0 0 0 chr1 26072330 26072369 -216591984 + (CA)n Simple_repeat Simple_repeat 2 40 0 804 185 60 38 chr1 26073854 26074038 -216590315 - MER5A DNA MER1_type 0 189 2 2207 126 0 0 chr1 26074123 26074417 -216589936 + AluSx SINE Alu 5 298 -14 358 234 9 36 chr1 26075252 26075363 -216588990 - MER117 DNA MER1_type -33 164 57 32 26 0 0 chr1 26075399 26075438 -216588915 + AT_rich Low_complexity Low_complexity 1 39 0 193 312 91 0 chr1 26075457 26075534 -216588819 + L2 LINE L2 3226 3309 -4 329 312 96 8 chr1 26075933 26076058 -216588295 - MIR3 SINE MIR -49 159 24 2221 121 0 0 chr1 26076102 26076391 -216587962 + AluSg SINE Alu 1 289 -21 456 276 167 9 chr1 26076558 26076779 -216587574 + L2 LINE L2 2804 3059 -254 232 241 101 13 chr1 26076811 26076890 -216587463 + L2 LINE L2 3228 3313 0 252 183 118 65 chr1 26076933 26077026 -216587327 + MIR SINE MIR 35 132 -76 279 93 0 0 chr1 26078066 26078109 -216586244 + (TG)n Simple_repeat Simple_repeat 2 44 0 227 128 0 0 chr1 26078450 26078489 -216585864 - Alu SINE Alu -6 295 257 428 290 27 10 chr1 26078555 26078829 -216585524 - MER115 DNA AcHobo -318 375 33 663 312 45 25 chr1 26078851 26079291 -216585062 + L2 LINE L2 2638 3084 -229 769 237 36 41 chr1 26079458 26079629 -216584724 - MIR SINE MIR -2 260 89 2222 123 0 26 chr1 26079629 26079937 -216584416 - AluSx SINE Alu -12 300 1 769 237 36 41 chr1 26079937 26079984 -216584369 - MIR SINE MIR -173 89 43 243 0 0 0 chr1 26080098 26080125 -216584228 + (CA)n Simple_repeat Simple_repeat 2 28 0 485 296 33 33 chr1 26080429 26080642 -216583711 + MIR SINE MIR 48 260 -2 208 329 27 0 chr1 26081557 26081629 -216582724 + MIR SINE MIR 34 107 -155 537 276 96 0 chr1 26081629 26081855 -216582498 + MIR SINE MIR 1 249 -13 1924 151 27 0 chr1 26082456 26082755 -216581598 + AluJb SINE Alu 3 309 -3 513 141 22 60 chr1 26082759 26082943 -216581410 + GA-rich Low_complexity Low_complexity 2 178 0 505 285 72 45 chr1 26083669 26084106 -216580247 + MLT1L LTR MaLR 58 612 -3 247 191 0 107 chr1 26084138 26084222 -216580131 - MLT1K LTR MaLR 0 588 514 22 0 0 0 chr1 26084415 26084437 -216579916 + AT_rich Low_complexity Low_complexity 1 22 0 2498 65 0 0 chr1 26084991 26085284 -216579069 + AluSx SINE Alu 1 293 -19 359 291 31 39 chr1 26085443 26085570 -216578783 + L2 LINE L2 3147 3272 0 2345 105 0 0 chr1 26086260 26086554 -216577799 - AluSx SINE Alu -18 294 1 418 186 12 23 chr1 26086646 26086732 -216577621 - MIR3 SINE MIR -46 162 78 483 141 0 0 chr1 26087009 26087087 -216577266 + AluS SINE Alu 7 84 -229 253 244 37 37 chr1 26087116 26087198 -216577155 + CT-rich Low_complexity Low_complexity 2 83 0 538 248 39 33 chr1 26087234 26087387 -216576966 + MIR3 SINE MIR 34 187 -21 2359 106 3 0 chr1 26087477 26087780 -216576573 - AluSq SINE Alu -9 304 1 2538 175 37 10 chr1 26088543 26089035 -216575318 - MLT1D LTR MaLR 0 505 1 584 262 18 24 chr1 26089065 26089233 -216575120 + MLT1H LTR MaLR 8 174 -375 712 211 36 24 chr1 26089387 26089553 -216574800 + MLT1H LTR MaLR 382 549 0 255 277 0 85 chr1 26089882 26089976 -216574377 + MIR SINE MIR 13 98 -164 2945 41 0 0 chr1 26090040 26090408 -216573945 - L1PA4 LINE L1 -1 6154 5787 1706 62 0 0 chr1 26090408 26090634 -216573719 + L1P LINE L1 1143 1368 -4778 595 246 62 17 chr1 26090869 26091048 -216573305 + MIR SINE MIR 76 262 0 766 231 57 98 chr1 26091406 26091864 -216572489 + MLT1H1 LTR MaLR 115 553 -2 2287 120 0 0 chr1 26092016 26092316 -216572037 + AluSx SINE Alu 6 305 -7 710 259 97 0 chr1 26092375 26092591 -216571762 + MIR SINE MIR 12 248 -14 2255 119 0 3 chr1 26093457 26093760 -216570593 - AluSx SINE Alu -10 302 1 543 281 135 0 chr1 26093911 26094103 -216570250 + MIR SINE MIR 31 248 -14 207 0 0 0 chr1 26095185 26095208 -216569145 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 985 109 29 0 chr1 26095211 26095348 -216569005 - AluSg/x SINE Alu -35 277 137 2471 63 0 13 chr1 26095350 26095650 -216568703 - AluSg SINE Alu -14 296 1 540 236 8 16 chr1 26095654 26095781 -216568572 + MIR SINE MIR 68 193 -69 456 279 134 0 chr1 26095940 26096112 -216568241 - ERVL LTR ERVL -1966 3798 3604 1497 134 5 31 chr1 26096122 26096346 -216568007 + AluJo SINE Alu 1 218 -94 2256 109 20 0 chr1 26096370 26096674 -216567679 + AluSx SINE Alu 1 310 -2 794 353 29 17 chr1 26096769 26097180 -216567173 - ERVL LTR ERVL -2199 3565 3150 665 168 136 77 chr1 26097182 26097265 -216567088 + ORSL DNA AcHobo 2 79 -196 2197 108 17 0 chr1 26097265 26097562 -216566791 + AluSx SINE Alu 1 302 -10 665 168 136 77 chr1 26097562 26097698 -216566655 + ORSL DNA AcHobo 79 234 -41 986 336 0 4 chr1 26097749 26098020 -216566333 - ERVL LTR ERVL -1905 3091 2822 1767 114 0 0 chr1 26098045 26098273 -216566080 - AluSx SINE Alu -83 229 2 1619 206 7 27 chr1 26098287 26098347 -216566006 - Looper DNA T2_type -1 1557 1497 1943 82 4 0 chr1 26098347 26098591 -216565762 - AluY SINE Alu -7 304 60 1619 206 7 27 chr1 26098591 26098942 -216565411 - Looper DNA T2_type -61 1497 1154 1894 158 31 36 chr1 26099561 26099589 -216564764 - Looper DNA T2_type -1107 451 424 1995 179 0 3 chr1 26099589 26099902 -216564451 + AluJb SINE Alu 1 312 0 1894 158 31 36 chr1 26099902 26100292 -216564061 - Looper DNA T2_type -1134 424 35 579 314 60 32 chr1 26100441 26100877 -216563476 - MLT1J2 LTR MaLR -2 448 1 2172 133 0 7 chr1 26100970 26101271 -216563082 + AluSx SINE Alu 1 299 -13 2261 88 7 14 chr1 26101271 26101565 -216562788 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr1 26101565 26101590 -216562763 + AT_rich Low_complexity Low_complexity 1 25 0 2244 93 10 10 chr1 26101724 26102014 -216562339 - AluSx SINE Alu -22 290 1 387 286 0 9 chr1 26102591 26102696 -216561657 - MER5A DNA MER1_type -80 109 6 375 281 92 20 chr1 26103919 26104072 -216560281 - L2 LINE L2 -1 3312 3149 284 227 0 45 chr1 26104065 26104131 -216560222 - MIR SINE MIR 0 262 200 * 286 261 70 38 chr1 26104141 26104298 -216560055 + L1ME4a LINE L1 5922 6083 -38 186 118 0 0 chr1 26104378 26104412 -216559941 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 516 258 172 21 chr1 26105023 26105209 -216559144 - MIR SINE MIR -48 214 1 183 333 107 0 chr1 26105209 26105237 -216559116 + L2 LINE L2 62 98 -3216 599 282 0 13 chr1 26105312 26105461 -216558892 + MIR3 SINE MIR 4 150 -58 622 273 98 8 chr1 26105507 26105743 -216558610 - MIR SINE MIR -3 259 2 194 236 18 18 chr1 26105848 26105903 -216558450 + L2 LINE L2 3211 3265 -7 644 298 16 21 chr1 26106485 26106673 -216557680 - MIR3 SINE MIR -4 204 18 324 263 116 56 chr1 26106883 26107018 -216557335 + MIR SINE MIR 34 186 -76 2461 161 36 9 chr1 26107018 26107439 -216556914 + MSTB1 LTR MaLR 1 432 0 324 263 116 56 chr1 26107439 26107501 -216556852 + MIR SINE MIR 186 243 -19 1624 241 41 2 chr1 26107581 26108016 -216556337 - HsTC2 DNA Tc2 -7 1891 1440 431 91 0 131 chr1 26108061 26108160 -216556193 - FLAM_C SINE Alu 0 143 58 473 223 153 13 chr1 26108162 26108319 -216556034 - HsTC2 DNA Tc2 -446 1452 1274 559 213 249 6 chr1 26108425 26108594 -216555759 - MIR SINE MIR -6 256 47 775 261 47 14 chr1 26108758 26108969 -216555384 - MIR SINE MIR -29 233 16 406 242 24 32 chr1 26109721 26109845 -216554508 - MER5B DNA MER1_type -54 124 2 332 265 51 20 chr1 26109888 26109986 -216554367 - MIR3 SINE MIR -18 190 90 198 0 0 0 chr1 26110394 26110416 -216553937 + (A)n Simple_repeat Simple_repeat 1 22 0 2282 95 7 10 chr1 26110416 26110712 -216553641 + AluSx SINE Alu 1 295 -17 613 245 117 10 chr1 26112034 26112230 -216552123 + MIR SINE MIR 46 262 0 364 213 74 39 chr1 26112219 26112236 -216552117 - MIR SINE MIR -65 143 128 * 326 23 0 23 chr1 26112236 26112280 -216552073 + (CAT)n Simple_repeat Simple_repeat 1 43 0 364 213 74 39 chr1 26112280 26112418 -216551935 - MIR SINE MIR -80 128 4 2508 65 0 0 chr1 26162882 26163174 -216501179 - AluY SINE Alu -19 292 1 1528 91 55 9 chr1 26163608 26163828 -216500525 - MER30 DNA MER1_type 0 230 1 1342 107 0 0 chr1 26164188 26164357 -216499996 + AluJo SINE Alu 1 169 -143 257 301 0 41 chr1 26164832 26164905 -216499448 - Charlie4 DNA MER1_type -4 1957 1888 2374 94 0 0 chr1 26164996 26165295 -216499058 + AluY SINE Alu 1 299 -12 2193 91 3 7 chr1 26165306 26165591 -216498762 + AluSg SINE Alu 1 284 -26 473 88 24 48 chr1 26165593 26165718 -216498635 + (CA)n Simple_repeat Simple_repeat 2 123 0 419 259 28 28 chr1 26166641 26166749 -216497604 - L2 LINE L2 -5 3308 3201 1659 211 79 38 chr1 26166871 26167430 -216496923 - L2 LINE L2 -352 2962 2381 943 167 18 0 chr1 26167911 26168079 -216496274 - AluSg/x SINE Alu 0 310 140 634 506 35 4 chr1 26168182 26168413 -216495940 - AluSg/x SINE Alu 0 312 75 2166 98 0 0 chr1 26168442 26168708 -216495645 + AluSq SINE Alu 1 266 -47 1611 191 3 0 chr1 26168872 26169160 -216495193 - AluJo SINE Alu 0 312 24 2076 130 10 7 chr1 26169224 26169532 -216494821 + AluJb SINE Alu 1 309 -3 1344 180 13 4 chr1 26169994 26170227 -216494126 + AluJo SINE Alu 63 297 -15 2425 83 0 3 chr1 26170998 26171300 -216493053 - AluY SINE Alu -10 301 1 1715 153 0 19 chr1 26171988 26172256 -216492097 - AluJo SINE Alu -16 296 34 2394 69 0 13 chr1 26172331 26172634 -216491719 - AluY SINE Alu -12 299 1 698 229 18 12 chr1 26172658 26172824 -216491529 + MER5A DNA MER1_type 18 184 -5 2147 110 10 7 chr1 26172826 26173118 -216491235 + AluSp SINE Alu 1 293 -20 474 254 0 75 chr1 26173601 26173759 -216490594 + L2 LINE L2 3154 3300 -13 779 200 0 0 chr1 26173759 26173889 -216490464 + FLAM_C SINE Alu 1 130 -3 474 254 0 75 chr1 26173889 26173903 -216490450 + L2 LINE L2 3300 3313 0 252 178 30 56 chr1 26174271 26174385 -216489968 - L1MD3 LINE L1 -1081 6733 6624 2362 82 3 3 chr1 26174816 26175110 -216489243 - AluSc SINE Alu -15 294 1 2247 117 0 7 chr1 26175977 26176277 -216488076 + AluSx SINE Alu 1 298 -14 407 225 146 17 chr1 26176282 26176460 -216487893 + L1ME3 LINE L1 5938 6138 -24 2048 144 3 3 chr1 26176473 26176778 -216487575 - AluSx SINE Alu -7 305 1 22 35 0 0 chr1 26176785 26176814 -216487539 + AT_rich Low_complexity Low_complexity 1 29 0 1519 192 7 18 chr1 26176820 26177106 -216487247 + AluJo SINE Alu 5 287 -25 502 231 0 0 chr1 26177137 26177241 -216487112 + U13 snRNA snRNA 1 104 0 212 0 36 0 chr1 26177242 26177270 -216487083 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 2236 104 3 3 chr1 26177427 26177726 -216486627 + AluSx SINE Alu 1 299 -13 340 319 43 0 chr1 26179237 26179353 -216485000 - MIR3 SINE MIR -12 196 76 502 268 98 38 chr1 26180023 26180206 -216484147 - L3 LINE CR1 -7 1570 1377 2130 108 0 23 chr1 26180370 26180539 -216483814 - AluSx SINE Alu -13 299 139 2271 104 0 0 chr1 26180539 26180837 -216483516 - AluY SINE Alu -13 298 1 2130 108 0 23 chr1 26180837 26180973 -216483380 - AluSx SINE Alu -173 139 1 186 43 0 0 chr1 26180995 26181018 -216483335 + (A)n Simple_repeat Simple_repeat 1 23 0 278 241 169 55 chr1 26181063 26181299 -216483054 + HAL1 LINE L1 1814 2076 -431 198 91 0 0 chr1 26181403 26181436 -216482917 + (A)n Simple_repeat Simple_repeat 1 33 0 844 147 0 22 chr1 26181456 26181592 -216482761 + FLAM_C SINE Alu 1 133 0 689 279 158 35 chr1 26181791 26181884 -216482469 + L2 LINE L2 2683 2763 -550 1708 164 38 17 chr1 26181884 26182171 -216482182 - AluJb SINE Alu -19 293 1 689 279 158 35 chr1 26182171 26182444 -216481909 + L2 LINE L2 2763 3001 -312 798 138 49 0 chr1 26182444 26182567 -216481786 + FLAM_C SINE Alu 1 129 -4 689 279 158 35 chr1 26182567 26182771 -216481582 + L2 LINE L2 3001 3309 -4 234 270 18 63 chr1 26182860 26182971 -216481382 + HAL1 LINE L1 2394 2499 -8 1608 157 20 56 chr1 26184131 26184437 -216479916 + AluJb SINE Alu 1 295 -17 1035 89 0 0 chr1 26184458 26184582 -216479771 + AluSp SINE Alu 1 124 -189 2218 65 44 7 chr1 26184591 26184885 -216479468 + AluY SINE Alu 1 305 -6 22 0 0 0 chr1 26184922 26184944 -216479409 + AT_rich Low_complexity Low_complexity 1 22 0 512 94 0 0 chr1 26185102 26185166 -216479187 - U6 snRNA snRNA -43 64 1 2298 110 3 0 chr1 26185901 26186211 -216478142 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr1 26187055 26187082 -216477271 + AT_rich Low_complexity Low_complexity 1 27 0 912 160 61 28 chr1 26188387 26188599 -216475754 - MER20 DNA MER1_type 0 219 1 1500 151 60 21 chr1 26189712 26190043 -216474310 - L1MC3 LINE L1 -74 7711 7368 1786 158 53 7 chr1 26190053 26190338 -216474015 + AluSx SINE Alu 1 298 -14 458 279 136 34 chr1 26190407 26190587 -216473766 + L2 LINE L2 2562 2722 -591 11836 86 10 4 chr1 26190587 26192157 -216472196 + THE1B-int LTR MaLR 2 1580 0 2073 97 103 30 chr1 26192157 26192496 -216471857 + THE1B LTR MaLR 1 364 0 458 279 136 34 chr1 26192496 26192806 -216471547 + L2 LINE L2 2721 3104 -209 2421 189 67 39 chr1 26192816 26193350 -216471003 + MLT2B3 LTR ERVL 1 549 -5 523 240 149 0 chr1 26193358 26193533 -216470820 + L2 LINE L2 3113 3313 0 2107 125 14 0 chr1 26193800 26194095 -216470258 + AluSx SINE Alu 1 299 -13 2714 36 0 3 chr1 26194098 26194402 -216469951 + AluY SINE Alu 2 304 -7 1373 88 0 0 chr1 26194402 26194573 -216469780 + AluY SINE Alu 133 303 -8 1687 161 48 65 chr1 26194703 26194872 -216469481 + MLT1B LTR MaLR 1 171 -219 2523 71 0 13 chr1 26194872 26195182 -216469171 + AluSg SINE Alu 1 306 -4 1687 161 48 65 chr1 26195182 26195409 -216468944 + MLT1B LTR MaLR 171 390 0 2214 103 7 17 chr1 26196180 26196482 -216467871 + AluSc SINE Alu 1 299 -10 2274 112 10 3 chr1 26196592 26196897 -216467456 + AluSx SINE Alu 1 307 -5 368 217 0 0 chr1 26196934 26196994 -216467359 - Tigger3(Golem) DNA MER2_type -2969 60 1 636 262 165 61 chr1 26197346 26197605 -216466748 - L3 LINE CR1 -7 1570 1269 2134 97 16 38 chr1 26197605 26197925 -216466428 - AluSq SINE Alu 0 313 1 636 262 165 61 chr1 26197925 26197993 -216466360 - L3 LINE CR1 -308 1269 1209 329 248 261 0 chr1 26198118 26198271 -216466082 - MIR SINE MIR -51 211 19 442 183 87 0 chr1 26198287 26198391 -216465962 - MIR SINE MIR -63 145 33 1078 113 21 77 chr1 26198457 26198651 -216465702 - AluSg/x SINE Alu -5 307 125 2227 113 0 0 chr1 26198658 26198959 -216465394 - AluSx SINE Alu -11 301 1 2091 112 0 4 chr1 26199622 26199900 -216464453 - AluSx SINE Alu -16 296 20 2159 122 14 0 chr1 26200064 26200360 -216463993 + AluSx SINE Alu 1 300 -12 460 284 32 42 chr1 26200954 26201072 -216463281 + MIR SINE MIR 31 148 -114 2109 130 0 13 chr1 26201072 26201372 -216462981 - AluSx SINE Alu -14 298 3 460 284 32 42 chr1 26201372 26201443 -216462910 + MIR SINE MIR 148 218 -44 236 245 174 31 chr1 26201572 26201670 -216462683 - MIR SINE MIR -59 203 92 876 184 6 19 chr1 26201836 26201994 -216462359 - FRAM SINE Alu -10 156 1 220 311 27 14 chr1 26202052 26202126 -216462227 + L2 LINE L2 3239 3313 0 939 250 14 45 chr1 26202242 26202375 -216461978 + L1ME1 LINE L1 5806 5942 -224 1877 163 0 7 chr1 26202375 26202670 -216461683 + AluJb SINE Alu 1 293 -19 939 250 14 45 chr1 26202670 26202866 -216461487 + L1ME1 LINE L1 5942 6119 -47 4501 76 2 0 chr1 26202866 26203429 -216460924 + LTR6A LTR ERV1 1 564 0 413 271 0 39 chr1 26203429 26203447 -216460906 + L1MA10 LINE L1 6275 6292 -42 2277 117 0 0 chr1 26203445 26203745 -216460608 - AluSx SINE Alu -12 300 1 263 280 149 0 chr1 26203746 26203853 -216460500 + MIR3 SINE MIR 81 203 -5 2098 113 0 31 chr1 26204426 26204762 -216459591 - AluSx SINE Alu 0 327 1 1866 179 0 7 chr1 26205080 26205381 -216458972 - AluJb SINE Alu -13 299 1 2434 83 3 0 chr1 26205943 26206245 -216458108 + AluSp SINE Alu 1 303 -10 1828 158 25 0 chr1 26206513 26206797 -216457556 - AluJb SINE Alu -11 301 11 251 182 0 0 chr1 26207020 26207064 -216457289 - MER53 DNA DNA 0 189 146 449 270 35 9 chr1 26207292 26207407 -216456946 - MIR3 SINE MIR -19 189 72 2193 130 7 0 chr1 26207530 26207829 -216456524 - AluSx SINE Alu -11 301 1 1557 124 44 0 chr1 26207869 26208094 -216456259 - AluSq SINE Alu -78 235 1 1666 263 50 12 chr1 26208203 26208714 -216455639 + L2 LINE L2 2778 3307 -6 223 281 125 10 chr1 26208930 26209026 -216455327 + L2 LINE L2 3207 3313 0 904 253 8 58 chr1 26209158 26209274 -216455079 + L1ME1 LINE L1 5822 5942 -236 1915 159 0 7 chr1 26209274 26209569 -216454784 + AluJb SINE Alu 1 293 -19 904 253 8 58 chr1 26209569 26209765 -216454588 + L1ME1 LINE L1 5942 6146 -32 4308 79 9 2 chr1 26209765 26210325 -216454028 + LTR6A LTR ERV1 1 564 0 904 253 8 58 chr1 26210325 26210341 -216454012 + L1ME1 LINE L1 6146 6124 -54 2259 117 0 0 chr1 26210341 26210641 -216453712 - AluSx SINE Alu -12 300 1 904 253 8 58 chr1 26210641 26210689 -216453664 + L1ME1 LINE L1 6123 6172 -6 246 174 0 0 chr1 26210690 26210736 -216453617 + GA-rich Low_complexity Low_complexity 1 46 0 257 265 0 15 chr1 26210842 26210910 -216453443 + MIR3 SINE MIR 12 78 -130 260 272 114 76 chr1 26211262 26211311 -216453042 + MIR3 SINE MIR 40 86 -122 2345 101 0 7 chr1 26211311 26211619 -216452734 - AluSx SINE Alu -6 306 1 260 272 114 76 chr1 26211619 26211727 -216452626 + MIR3 SINE MIR 86 203 -5 2015 121 3 28 chr1 26212302 26212636 -216451717 - AluSx SINE Alu 0 327 1 1914 176 0 7 chr1 26212952 26213253 -216451100 - AluJb SINE Alu -13 299 1 2508 67 3 0 chr1 26213818 26214116 -216450237 + AluSp SINE Alu 1 299 -14 1774 160 24 11 chr1 26214384 26214671 -216449682 - AluJb SINE Alu -11 301 11 248 182 0 0 chr1 26214900 26214944 -216449409 - MER53 DNA DNA 0 189 146 426 245 28 19 chr1 26215173 26215279 -216449074 - MIR3 SINE MIR -19 189 83 2085 119 41 0 chr1 26215408 26215701 -216448652 - AluSx SINE Alu -7 305 1 1793 111 4 0 chr1 26215734 26215968 -216448385 - AluSq SINE Alu -78 235 1 1677 263 50 12 chr1 26216077 26216589 -216447764 + L2 LINE L2 2778 3308 -5 309 289 119 25 chr1 26216663 26216822 -216447531 + MIR3 SINE MIR 28 201 -7 537 221 2 10 chr1 26217248 26217364 -216446989 + MIR SINE MIR 15 131 -77 2117 121 50 0 chr1 26217374 26217671 -216446682 - AluSx SINE Alu 0 312 1 235 274 32 53 chr1 26218084 26218179 -216446174 + MIR SINE MIR 104 196 -66 2446 94 0 0 chr1 26218213 26218521 -216445832 + AluY SINE Alu 1 308 -3 237 203 62 16 chr1 26218680 26218744 -216445609 + L2 LINE L2 3205 3271 -1 377 96 0 6 chr1 26218831 26219070 -216445283 - AluSc SINE Alu -7 292 7 1521 221 96 24 chr1 26219075 26219194 -216445159 + L1ME3A LINE L1 5081 5190 -980 1849 158 10 39 chr1 26219194 26219504 -216444849 + AluSx SINE Alu 1 301 -11 1521 221 96 24 chr1 26219504 26220055 -216444298 + L1ME3A LINE L1 5190 5803 -367 257 216 0 0 chr1 26220068 26220119 -216444234 + MER74B LTR ERVL 3 53 -569 239 244 67 52 chr1 26220284 26220419 -216443934 + MER74B LTR ERVL 415 551 -71 451 148 40 30 chr1 26220500 26220601 -216443752 + L1ME3A LINE L1 5825 5926 -244 1211 224 115 33 chr1 26220601 26220967 -216443386 - MSTD LTR MaLR 0 396 1 270 123 185 0 chr1 26220967 26221032 -216443321 - MSTD-int LTR MaLR 0 1735 1659 405 0 0 0 chr1 26221032 26221077 -216443276 + (TA)n Simple_repeat Simple_repeat 2 46 0 1226 155 0 0 chr1 26221077 26221251 -216443102 - AluJo/FRAM SINE Alu -4 308 135 1905 154 7 17 chr1 26221253 26221552 -216442801 - AluJo SINE Alu -10 302 7 4423 222 206 42 chr1 26221556 26222472 -216441881 - MSTD-int LTR MaLR -64 1671 906 1506 61 0 0 chr1 26222472 26222652 -216441701 - AluY SINE Alu -2 309 130 4423 222 206 42 chr1 26222652 26223026 -216441327 - MSTD-int LTR MaLR -829 906 595 2300 122 0 3 chr1 26223026 26223338 -216441015 - AluSq SINE Alu -2 311 1 4423 222 206 42 chr1 26223338 26223481 -216440872 - MSTD-int LTR MaLR -1140 595 2 1090 212 125 39 chr1 26223485 26223844 -216440509 - MSTD LTR MaLR -2 394 5 366 169 84 0 chr1 26223848 26223931 -216440422 + L1ME3A LINE L1 5922 6011 -159 290 241 81 0 chr1 26223933 26224020 -216440333 + L1ME3A LINE L1 6059 6152 -18 306 315 54 27 chr1 26224215 26224364 -216439989 - MIR SINE MIR -79 183 31 796 241 155 24 chr1 26224374 26224788 -216439565 + MER113 DNA MER1_type? 4 471 -50 401 290 57 0 chr1 26225065 26225206 -216439147 - MIR SINE MIR -58 150 33 870 230 29 24 chr1 26225335 26225544 -216438809 - MER63A DNA MER1_type 0 210 1 825 171 43 43 chr1 26225572 26225759 -216438594 - MER5A DNA MER1_type 0 189 3 370 320 77 0 chr1 26225800 26225956 -216438397 + Charlie8 DNA MER1_type 56 223 -2194 293 330 9 36 chr1 26226030 26226142 -216438211 - MIR3 SINE MIR -50 158 50 353 293 147 6 chr1 26226353 26226510 -216437843 + MIR SINE MIR 69 247 -15 408 207 87 73 chr1 26226800 26226950 -216437403 - MIR SINE MIR -44 218 67 562 238 191 0 chr1 26227555 26227702 -216436651 - MER5A DNA MER1_type -6 183 9 894 165 24 0 chr1 26227720 26227890 -216436463 - MER20 DNA MER1_type -17 202 29 2116 99 0 7 chr1 26228119 26228422 -216435931 + AluY SINE Alu 1 301 0 333 0 0 0 chr1 26228423 26228460 -216435893 + (CA)n Simple_repeat Simple_repeat 2 38 0 1233 109 0 12 chr1 26228460 26228637 -216435716 + AluSg/x SINE Alu 126 306 0 400 290 17 51 chr1 26228757 26228933 -216435420 + L2 LINE L2 2909 3078 -194 251 71 24 0 chr1 26229021 26229063 -216435290 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 611 149 25 0 chr1 26229286 26229316 -216435037 - L1MA4 LINE L1 -399 5901 5872 343 229 9 29 chr1 26229316 26229407 -216434946 - L1PA6 LINE L1 -285 5869 5779 2024 111 54 0 chr1 26229407 26229686 -216434667 - AluSx SINE Alu -18 294 1 343 229 9 29 chr1 26229686 26229699 -216434654 - L1PA6 LINE L1 -375 5779 5767 889 165 0 0 chr1 26231021 26231154 -216433199 - FLAM_C SINE Alu 0 133 1 486 237 8 46 chr1 26231158 26231289 -216433064 + MIR SINE MIR 137 262 0 360 249 3 0 chr1 26231840 26231918 -216432435 - MIR SINE MIR -63 145 76 308 145 60 145 chr1 26231921 26232038 -216432315 - L1MEd LINE L1 -5289 830 724 220 250 0 17 chr1 26232665 26232725 -216431628 - MIR SINE MIR -62 146 88 2358 103 0 6 chr1 26232755 26233067 -216431286 - AluSx SINE Alu -2 310 1 2048 95 4 0 chr1 26233879 26234141 -216430212 - AluSx SINE Alu -49 263 1 2098 147 27 0 chr1 26234143 26234443 -216429910 - AluJo SINE Alu -4 308 1 1386 225 37 42 chr1 26234713 26234919 -216429434 + L2 LINE L2 2513 2718 -596 2184 120 7 0 chr1 26234919 26235220 -216429133 + AluSx SINE Alu 1 303 -9 1386 225 37 42 chr1 26235220 26235391 -216428962 + L2 LINE L2 2718 2888 -426 681 214 22 39 chr1 26235442 26235555 -216428798 + MER97c DNA MER1_type? 5 115 -975 2198 103 3 0 chr1 26235555 26235869 -216428484 - AluSx SINE Alu 0 312 1 681 214 22 39 chr1 26235869 26235933 -216428420 + MER97c DNA MER1_type? 115 179 -911 765 288 100 42 chr1 26235954 26236284 -216428069 + L2 LINE L2 2965 3313 0 3170 169 69 36 chr1 26237284 26238026 -216426327 + L1MC4 LINE L1 7046 7762 -280 1663 155 106 29 chr1 26238026 26238198 -216426155 - THE1C LTR MaLR 0 375 218 204 40 0 0 chr1 26238198 26238223 -216426130 + (GA)n Simple_repeat Simple_repeat 1 25 0 1663 155 106 29 chr1 26238223 26238398 -216425955 - THE1C LTR MaLR -157 218 1 3170 169 69 36 chr1 26238398 26238412 -216425941 + L1MC4 LINE L1 7762 7774 -268 2261 124 7 0 chr1 26238412 26238718 -216425635 + AluSx SINE Alu 1 308 -4 3170 169 69 36 chr1 26238718 26238741 -216425612 + L1MC4 LINE L1 7774 7852 -190 2301 110 0 0 chr1 26238795 26239094 -216425259 + AluSq SINE Alu 1 299 -14 707 271 164 18 chr1 26239107 26239491 -216424862 + L2 LINE L2 488 927 -2387 754 208 13 103 chr1 26239544 26239798 -216424555 - MIR SINE MIR -21 241 16 * 784 301 92 40 chr1 26239787 26240288 -216424065 + L2 LINE L2 998 1524 -1790 36 40 0 0 chr1 26241549 26241599 -216422754 + AT_rich Low_complexity Low_complexity 1 50 0 3305 247 152 23 chr1 26241599 26242728 -216421625 + L2 LINE L2 1512 2786 -528 663 207 72 11 chr1 26242784 26242976 -216421377 - MIR SINE MIR -57 205 5 464 267 17 0 chr1 26242982 26243102 -216421251 + MIR3 SINE MIR 50 171 -37 563 120 0 20 chr1 26243423 26243444 -216420909 + (TCTA)n Simple_repeat Simple_repeat 1 21 -77 2297 128 0 0 chr1 26243444 26243757 -216420596 - AluSq SINE Alu 0 313 1 563 120 0 20 chr1 26243757 26243835 -216420518 + (TCTA)n Simple_repeat Simple_repeat 21 98 0 231 158 0 0 chr1 26243835 26243873 -216420480 - Alu SINE Alu -10 123 86 999 153 19 77 chr1 26243876 26244085 -216420268 - AluJo SINE Alu -94 218 22 258 32 0 0 chr1 26244375 26244406 -216419947 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 283 243 57 0 chr1 26244518 26244588 -216419765 + MIR SINE MIR 65 138 -124 326 278 172 18 chr1 26244792 26244959 -216419394 + MIR3 SINE MIR 9 193 -63 208 219 94 31 chr1 26245222 26245286 -216419067 - L2 LINE L2 -189 3083 3016 2250 125 0 0 chr1 26245466 26245771 -216418582 + AluSx SINE Alu 1 305 -7 258 282 113 57 chr1 26245808 26245932 -216418421 - MIR SINE MIR -114 148 18 656 308 66 5 chr1 26246209 26246407 -216417946 + MIR SINE MIR 1 210 -52 1148 153 0 42 chr1 26246489 26246678 -216417675 + AluJo SINE Alu 1 181 -131 1655 175 4 4 chr1 26246678 26246941 -216417412 + AluJb SINE Alu 23 285 -27 2007 151 0 3 chr1 26246951 26247255 -216417098 + AluSx SINE Alu 1 303 -9 342 138 0 0 chr1 26247799 26247857 -216416496 + (TG)n Simple_repeat Simple_repeat 2 59 0 2243 129 0 0 chr1 26247890 26248193 -216416160 - AluSx SINE Alu -9 303 1 2442 79 0 0 chr1 26248201 26248505 -216415848 - AluY SINE Alu -7 304 1 1940 156 3 3 chr1 26248515 26248803 -216415550 - AluJb SINE Alu -24 288 1 483 283 133 12 chr1 26248933 26249099 -216415254 + MIR SINE MIR 61 246 -16 583 239 7 27 chr1 26249299 26249483 -216414870 - L1ME3 LINE L1 -75 6089 5913 2385 101 3 0 chr1 26249586 26249892 -216414461 + AluSp SINE Alu 1 307 -6 496 115 81 0 chr1 26250062 26250149 -216414204 - MER53 DNA DNA 0 189 96 484 143 48 0 chr1 26250074 26250158 -216414195 + MER53 DNA DNA 23 110 -79 * 655 256 24 0 chr1 26250570 26250738 -216413615 + MIR SINE MIR 91 262 0 235 302 21 0 chr1 26250838 26250934 -216413419 - MIR SINE MIR -55 153 56 410 311 0 8 chr1 26251169 26251291 -216413062 + MIR SINE MIR 2 122 -140 * 910 302 36 4 chr1 26251290 26251476 -216412877 - MIR SINE MIR -1 261 64 2321 116 0 0 chr1 26251476 26251777 -216412576 - AluSq SINE Alu -12 301 1 910 302 36 4 chr1 26251777 26251838 -216412515 - MIR SINE MIR -198 64 6 1595 126 133 19 chr1 26252017 26252280 -216412073 - AluSg SINE Alu -17 293 1 1960 94 0 8 chr1 26252424 26252706 -216411647 + AluSg SINE Alu 35 310 0 338 286 119 0 chr1 26252754 26252880 -216411473 + MIR SINE MIR 119 259 -3 488 288 22 14 chr1 26253795 26253934 -216410419 + MIR3 SINE MIR 55 194 -14 1916 147 3 10 chr1 26254011 26254323 -216410030 + AluJo SINE Alu 1 310 -2 2233 90 3 0 chr1 26254323 26254613 -216409740 + AluSx SINE Alu 1 291 -21 728 234 137 5 chr1 26255257 26255462 -216408891 - MIR SINE MIR -29 233 2 391 338 14 14 chr1 26255548 26255690 -216408663 + MIR SINE MIR 111 252 -10 189 280 40 0 chr1 26255701 26255751 -216408602 + MIR SINE MIR 70 121 -87 788 186 38 43 chr1 26256341 26256558 -216407795 + MLT1H LTR MaLR 322 548 -1 200 261 234 40 chr1 26256576 26256802 -216407551 + L2 LINE L2 2316 2585 -729 310 260 55 24 chr1 26256822 26256949 -216407404 + Charlie7 DNA MER1_type 1 131 -2481 2371 55 10 0 chr1 26256951 26257242 -216407111 + AluSp SINE Alu 1 294 -19 561 244 125 6 chr1 26257259 26257419 -216406934 - MIR SINE MIR -48 214 36 1091 168 5 0 chr1 26257419 26257604 -216406749 - MER5A DNA MER1_type 0 189 4 2336 93 0 0 chr1 26257832 26258143 -216406210 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 26258149 26258171 -216406182 + AT_rich Low_complexity Low_complexity 1 22 0 1294 169 0 67 chr1 26258200 26258484 -216405869 - AluJo SINE Alu -15 297 33 561 260 74 71 chr1 26258498 26258863 -216405490 - L1MC5 LINE L1 -30 7931 7566 1077 213 59 39 chr1 26258864 26259202 -216405151 + Charlie7 DNA MER1_type 303 647 -1965 250 211 143 8 chr1 26259229 26259362 -216404991 + Charlie7 DNA MER1_type 2415 2565 -47 2014 132 6 3 chr1 26259597 26259908 -216404445 - AluSx SINE Alu 0 312 1 353 148 0 0 chr1 26259940 26260001 -216404352 - AluSx SINE Alu 0 300 240 1290 121 0 0 chr1 26260001 26260183 -216404170 - AluSx SINE Alu -130 182 1 213 314 45 58 chr1 26260263 26260419 -216403934 + L2 LINE L2 2938 3091 -181 255 308 84 19 chr1 26260461 26260568 -216403785 + MIR SINE MIR 3 116 -146 1082 212 74 0 chr1 26260584 26260815 -216403538 + MIR SINE MIR 9 256 -6 250 147 29 0 chr1 26260859 26260927 -216403426 + (AATTG)n Simple_repeat Simple_repeat 4 73 0 180 0 0 0 chr1 26261403 26261423 -216402930 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 1782 152 0 13 chr1 26261476 26261778 -216402575 + AluJo SINE Alu 1 298 -14 298 50 0 0 chr1 26261846 26261886 -216402467 + L1PB4 LINE L1 6117 6156 0 235 255 38 75 chr1 26262680 26262786 -216401567 - MIR SINE MIR -55 207 106 287 192 14 0 chr1 26263318 26263391 -216400962 + GA-rich Low_complexity Low_complexity 3 76 0 348 282 161 13 chr1 26263441 26263590 -216400763 + L3 LINE CR1 1288 1458 -119 305 275 110 37 chr1 26263613 26263722 -216400631 - MIR3 SINE MIR -18 190 74 382 248 129 73 chr1 26263736 26264039 -216400314 + L1ME4a LINE L1 5696 6015 -106 994 242 94 0 chr1 26264055 26264278 -216400075 - MIR SINE MIR -6 256 13 1976 106 71 31 chr1 26264294 26264616 -216399737 - MER1B DNA MER1_type 0 337 3 192 279 0 0 chr1 26264620 26264663 -216399690 + L3 LINE CR1 1528 1570 -7 244 254 35 35 chr1 26265338 26265452 -216398901 + L1MC4 LINE L1 7928 8041 -1 1078 211 31 123 chr1 26265473 26265519 -216398834 + L2 LINE L2 2937 2986 -327 2381 150 0 0 chr1 26265519 26265885 -216398468 + MER47A DNA MER2_type 1 366 0 1078 211 31 123 chr1 26265885 26265964 -216398389 + L2 LINE L2 2986 3071 -242 2087 128 0 0 chr1 26265964 26266268 -216398085 - AluSq SINE Alu -9 304 1 1078 211 31 123 chr1 26266268 26266409 -216397944 + L2 LINE L2 3071 3155 -158 1969 128 10 0 chr1 26266409 26266697 -216397656 - AluSx SINE Alu -21 291 1 1078 211 31 123 chr1 26266697 26266841 -216397512 + L2 LINE L2 3155 3311 -2 677 298 87 8 chr1 26266836 26267078 -216397275 - MIR SINE MIR 0 262 2 * 189 307 68 11 chr1 26267083 26267171 -216397182 + MIR SINE MIR 96 188 -74 716 240 113 9 chr1 26267510 26267731 -216396622 + MIR SINE MIR 18 261 -1 375 241 119 40 chr1 26267750 26268003 -216396350 - L1ME4a LINE L1 -26 6095 5823 968 207 77 9 chr1 26268004 26268226 -216396127 + MIR SINE MIR 5 241 -21 2137 118 0 0 chr1 26268355 26268651 -216395702 + AluSx SINE Alu 1 296 -16 198 182 159 0 chr1 26268949 26268993 -216395360 + MIR SINE MIR 93 143 -119 270 171 214 0 chr1 26269339 26269409 -216394944 + MIR SINE MIR 64 148 -114 219 326 41 31 chr1 26269452 26269550 -216394803 - MIR SINE MIR -77 131 33 267 221 162 0 chr1 26270240 26270308 -216394045 - MIR SINE MIR -134 128 50 198 0 0 0 chr1 26270802 26270824 -216393529 + (T)n Simple_repeat Simple_repeat 1 22 0 1582 52 0 5 chr1 26270839 26271033 -216393320 - AluY SINE Alu -118 193 1 371 293 101 72 chr1 26271113 26271431 -216392922 + L1ME4a LINE L1 5794 6120 -1 351 298 0 0 chr1 26271465 26271559 -216392794 + MIR SINE MIR 156 249 -13 204 40 0 0 chr1 26271626 26271651 -216392702 + (CCCGG)n Simple_repeat Simple_repeat 1 25 0 207 151 38 19 chr1 26272600 26272653 -216391700 + (CGG)n Simple_repeat Simple_repeat 3 56 0 41 82 0 0 chr1 26272888 26272985 -216391368 + GC_rich Low_complexity Low_complexity 1 97 0 21 36 0 0 chr1 26273017 26273045 -216391308 + GC_rich Low_complexity Low_complexity 1 28 0 338 210 111 0 chr1 26274016 26274097 -216390256 - L2 LINE L2 0 3313 3224 256 246 104 82 chr1 26275217 26275351 -216389002 + MIR3 SINE MIR 9 145 -63 203 267 200 11 chr1 26275976 26276066 -216388287 - L2 LINE L2 -19 3294 3188 1442 184 0 70 chr1 26278717 26279033 -216385320 - AluJo SINE Alu -14 298 5 1806 146 24 3 chr1 26279225 26279513 -216384840 + AluJo SINE Alu 1 294 -18 275 204 0 0 chr1 26279539 26279583 -216384770 - AluJ/monomer SINE Alu -264 44 1 292 276 142 0 chr1 26279929 26280063 -216384290 - MIR SINE MIR 0 262 110 2134 104 19 7 chr1 26280201 26280509 -216383844 + AluSx SINE Alu 1 312 0 322 94 0 94 chr1 26280696 26280760 -216383593 - L1MD3 LINE L1 -10 7985 7928 189 0 0 0 chr1 26280793 26280814 -216383539 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 991 185 0 0 chr1 26280816 26281000 -216383353 + AluJo SINE Alu 123 306 -6 641 145 23 87 chr1 26281271 26281317 -216383036 - Charlie1 DNA MER1_type -11 2750 2703 2212 95 10 0 chr1 26281317 26281612 -216382741 + AluSp SINE Alu 1 298 -15 641 145 23 87 chr1 26281612 26281686 -216382667 - Charlie1 DNA MER1_type -58 2703 2642 1631 173 0 55 chr1 26281686 26282016 -216382337 + AluJo SINE Alu 1 312 0 641 145 23 87 chr1 26282016 26282066 -216382287 - Charlie1 DNA MER1_type -119 2642 2590 2291 96 3 0 chr1 26282068 26282371 -216381982 + AluSx SINE Alu 2 305 -7 404 165 13 0 chr1 26282379 26282458 -216381895 - Charlie1 DNA MER1_type -228 2533 2454 294 270 122 78 chr1 26282764 26282776 -216381577 - L2 LINE L2 0 3313 3303 2138 80 28 7 chr1 26282776 26283065 -216381288 - AluSq SINE Alu -18 295 1 294 270 122 78 chr1 26283065 26283348 -216381005 - L2 LINE L2 -10 3303 3005 331 286 231 7 chr1 26283596 26283743 -216380610 - MER5A DNA MER1_type 0 189 10 705 147 0 77 chr1 26285519 26285550 -216378803 - FLAM_A SINE Alu -172 139 107 1923 122 0 24 chr1 26285550 26285863 -216378490 + AluSx SINE Alu 1 306 0 705 147 0 77 chr1 26285863 26285972 -216378381 - FLAM_A SINE Alu -204 107 8 1762 163 51 0 chr1 26286157 26286452 -216377901 - AluJb SINE Alu -2 310 1 1487 160 28 18 chr1 26286613 26286895 -216377458 + AluJo SINE Alu 14 298 -14 318 309 109 39 chr1 26287104 26287334 -216377019 - L1M2 LINE L1 -4974 1875 1630 21 36 0 0 chr1 26288310 26288338 -216376015 + AT_rich Low_complexity Low_complexity 1 28 0 2595 172 38 16 chr1 26288883 26289388 -216374965 - Charlie1b DNA MER1_type -7 516 1 2102 131 0 0 chr1 26289763 26290068 -216374285 + AluY SINE Alu 1 305 -6 685 319 66 4 chr1 26290848 26291074 -216373279 - L3 LINE CR1 -7 1570 1331 700 108 17 42 chr1 26291104 26291224 -216373129 - FLAM_A SINE Alu -1 141 25 2209 104 0 16 chr1 26291317 26291634 -216372719 + AluSx SINE Alu 1 312 0 599 274 246 6 chr1 26291667 26291984 -216372369 - L3 LINE CR1 -238 1339 947 297 236 38 57 chr1 26292402 26292508 -216371845 + MIR3 SINE MIR 102 205 -3 2045 104 3 77 chr1 26293205 26293541 -216370812 + AluSx SINE Alu 1 311 -1 292 254 164 27 chr1 26293683 26293793 -216370560 + MIR3 SINE MIR 77 201 -7 845 251 150 36 chr1 26294094 26294276 -216370077 - L1MC4a LINE L1 -718 5615 5455 2287 97 0 0 chr1 26294276 26294575 -216369778 - AluSg SINE Alu -11 299 1 2348 73 3 0 chr1 26294585 26294885 -216369468 - AluSp SINE Alu -12 301 1 845 251 150 36 chr1 26294885 26294962 -216369391 - L1MC4a LINE L1 -885 5448 5381 2393 66 7 0 chr1 26294962 26295265 -216369088 + AluY SINE Alu 1 305 -6 845 251 150 36 chr1 26295265 26295655 -216368698 - L1MC4a LINE L1 -952 5381 5191 30 45 0 0 chr1 26296929 26296973 -216367380 + AT_rich Low_complexity Low_complexity 1 44 0 3259 249 150 26 chr1 26296973 26298107 -216366246 + L2 LINE L2 1512 2786 -528 689 194 73 11 chr1 26298166 26298355 -216365998 - MIR SINE MIR -60 202 5 471 258 17 0 chr1 26298361 26298481 -216365872 + MIR3 SINE MIR 50 171 -37 2167 112 0 10 chr1 26298822 26299135 -216365218 - AluSq SINE Alu -2 311 2 321 89 0 0 chr1 26299135 26299180 -216365173 + (TCTG)n Simple_repeat Simple_repeat 3 47 0 263 182 0 0 chr1 26299190 26299234 -216365119 - FLAM SINE Alu -9 124 81 939 146 19 78 chr1 26299235 26299440 -216364913 - AluJo SINE Alu -98 214 22 333 47 0 0 chr1 26299730 26299773 -216364580 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 278 243 57 0 chr1 26299884 26299954 -216364399 + MIR SINE MIR 65 138 -124 320 278 172 18 chr1 26300158 26300325 -216364028 + MIR3 SINE MIR 9 193 -63 205 219 94 31 chr1 26300585 26300649 -216363704 - L2 LINE L2 -189 3083 3016 220 264 104 100 chr1 26300759 26300829 -216363524 - MIR SINE MIR -13 249 181 1812 158 0 0 chr1 26300829 26301127 -216363226 + AluSx SINE Alu 1 298 -14 220 264 104 100 chr1 26301127 26301287 -216363066 - MIR SINE MIR -81 181 18 645 293 71 10 chr1 26301564 26301762 -216362591 + MIR SINE MIR 1 210 -52 1046 169 0 16 chr1 26301844 26302028 -216362325 + AluJo SINE Alu 1 181 -131 1589 166 4 4 chr1 26302028 26302293 -216362060 + AluJb SINE Alu 23 287 -25 1698 173 0 3 chr1 26302301 26302601 -216361752 + AluSx SINE Alu 1 299 -13 183 156 0 0 chr1 26303145 26303177 -216361176 + (TG)n Simple_repeat Simple_repeat 2 33 0 2202 129 3 0 chr1 26303210 26303512 -216360841 - AluSx SINE Alu -9 303 1 2561 57 0 0 chr1 26303520 26303819 -216360534 - AluY SINE Alu -12 299 1 1903 167 3 3 chr1 26303829 26304117 -216360236 - AluJb SINE Alu -24 288 1 467 289 133 12 chr1 26304247 26304413 -216359940 + MIR SINE MIR 61 246 -16 596 240 6 27 chr1 26304598 26304783 -216359570 - L1ME3 LINE L1 -67 6099 5915 2420 92 3 0 chr1 26304890 26305194 -216359159 + AluSp SINE Alu 1 305 -8 469 105 93 0 chr1 26305364 26305450 -216358903 - MER53 DNA DNA 0 189 96 459 133 60 0 chr1 26305376 26305459 -216358894 + MER53 DNA DNA 23 110 -79 * 644 262 24 0 chr1 26305871 26306039 -216358314 + MIR SINE MIR 91 262 0 247 292 21 0 chr1 26306139 26306235 -216358118 - MIR SINE MIR -55 153 56 449 295 0 8 chr1 26306470 26306592 -216357761 + MIR SINE MIR 2 122 -140 * 787 244 6 0 chr1 26306591 26306759 -216357594 - MIR SINE MIR -1 261 93 2029 133 11 0 chr1 26306777 26307063 -216357290 - AluSq SINE Alu -13 300 12 1637 111 134 19 chr1 26307189 26307451 -216356902 - AluSg SINE Alu -18 292 1 1951 110 7 7 chr1 26307595 26307867 -216356486 + AluSg SINE Alu 35 306 -4 392 255 210 0 chr1 26307884 26308041 -216356312 + MIR SINE MIR 70 259 -3 503 281 22 14 chr1 26308956 26309095 -216355258 + MIR3 SINE MIR 55 194 -14 1969 127 3 48 chr1 26309172 26309486 -216354867 + AluJo SINE Alu 1 300 -12 2418 98 0 0 chr1 26309486 26309783 -216354570 + AluSx SINE Alu 1 297 -15 759 229 137 5 chr1 26310425 26310630 -216353723 - MIR SINE MIR -29 233 2 399 338 14 14 chr1 26310716 26310858 -216353495 + MIR SINE MIR 111 252 -10 195 280 40 0 chr1 26310869 26310919 -216353434 + MIR SINE MIR 70 121 -87 720 192 38 43 chr1 26311509 26311726 -216352627 + MLT1H LTR MaLR 322 548 -1 213 249 240 40 chr1 26311744 26311969 -216352384 + L2 LINE L2 2316 2585 -729 288 276 47 16 chr1 26311989 26312116 -216352237 + Charlie7 DNA MER1_type 1 131 -2481 2437 62 10 0 chr1 26312118 26312407 -216351946 + AluSp SINE Alu 1 292 -21 559 244 125 6 chr1 26312424 26312584 -216351769 - MIR SINE MIR -48 214 36 1071 178 5 0 chr1 26312584 26312769 -216351584 - MER5A DNA MER1_type 0 189 4 2424 93 0 3 chr1 26312996 26313307 -216351046 - AluY SINE Alu -1 310 1 22 0 0 0 chr1 26313313 26313335 -216351018 + AT_rich Low_complexity Low_complexity 1 22 0 1408 170 0 64 chr1 26313364 26313646 -216350707 - AluJo SINE Alu -16 296 33 471 266 74 71 chr1 26313661 26314011 -216350342 - L1MC5 LINE L1 -30 7931 7581 999 216 59 22 chr1 26314025 26314345 -216350008 + Charlie7 DNA MER1_type 303 634 -1978 240 221 69 28 chr1 26314391 26314536 -216349817 + Charlie7 DNA MER1_type 2415 2565 -47 2173 135 6 3 chr1 26314771 26315082 -216349271 - AluSx SINE Alu 0 312 1 327 164 0 0 chr1 26315121 26315182 -216349171 - AluSx SINE Alu 0 301 241 1275 137 0 0 chr1 26315182 26315364 -216348989 - AluSx SINE Alu -130 182 1 214 329 66 13 chr1 26315438 26315590 -216348763 + L2 LINE L2 2932 3091 -181 225 314 35 23 chr1 26315632 26315718 -216348635 + MIR SINE MIR 3 89 -173 1043 225 72 0 chr1 26315753 26315989 -216348364 + MIR SINE MIR 9 261 -1 229 162 29 0 chr1 26316028 26316096 -216348257 + (AATTG)n Simple_repeat Simple_repeat 4 73 0 180 0 0 0 chr1 26316572 26316592 -216347761 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 1909 150 0 26 chr1 26316645 26316951 -216347402 + AluJo SINE Alu 1 298 -14 287 87 0 0 chr1 26317013 26317059 -216347294 + L1PB4 LINE L1 6111 6156 0 224 264 38 75 chr1 26317854 26317960 -216346393 - MIR SINE MIR -55 207 106 236 222 14 0 chr1 26318489 26318561 -216345792 + GA-rich Low_complexity Low_complexity 4 76 0 337 289 211 7 chr1 26318611 26318753 -216345600 + L3 LINE CR1 1288 1458 -119 309 287 104 35 chr1 26318776 26318891 -216345462 - MIR3 SINE MIR -18 190 68 373 243 113 75 chr1 26318899 26319191 -216345162 + L1ME4a LINE L1 5696 5998 -123 997 239 99 0 chr1 26319218 26319440 -216344913 - MIR SINE MIR -6 256 13 2036 106 71 31 chr1 26319456 26319778 -216344575 - MER1B DNA MER1_type 0 337 3 188 279 0 0 chr1 26319782 26319825 -216344528 + L3 LINE CR1 1528 1570 -7 235 246 35 35 chr1 26320500 26320614 -216343739 + L1MC4 LINE L1 7928 8041 -1 262 167 0 21 chr1 26320632 26320680 -216343673 + L2 LINE L2 2935 2981 -332 2018 138 29 0 chr1 26320680 26321029 -216343324 + MER47A DNA MER2_type 1 359 -7 782 218 36 141 chr1 26321037 26321112 -216343241 + L2 LINE L2 2988 3069 -244 2308 117 0 0 chr1 26321112 26321411 -216342942 - AluSq SINE Alu -14 299 1 782 218 36 141 chr1 26321411 26321552 -216342801 + L2 LINE L2 3069 3153 -160 2126 122 10 0 chr1 26321552 26321840 -216342513 - AluSx SINE Alu -21 291 1 782 218 36 141 chr1 26321840 26321984 -216342369 + L2 LINE L2 3153 3311 -2 954 160 61 28 chr1 26322656 26322868 -216341485 - MER20 DNA MER1_type 0 219 1 1426 151 57 21 chr1 26323979 26324311 -216340042 - L1MC3 LINE L1 -74 7711 7368 1779 166 53 7 chr1 26324321 26324605 -216339748 + AluSx SINE Alu 1 297 -15 537 277 133 41 chr1 26324621 26324851 -216339502 + L2 LINE L2 2513 2720 -593 12094 85 8 3 chr1 26324851 26326422 -216337931 + THE1B-int LTR MaLR 2 1580 0 2159 97 100 29 chr1 26326422 26326762 -216337591 + THE1B LTR MaLR 1 364 0 537 277 133 41 chr1 26326762 26327072 -216337281 + L2 LINE L2 2719 3104 -209 2275 187 67 41 chr1 26327082 26327617 -216336736 + MLT2B3 LTR ERVL 1 549 -5 640 223 149 0 chr1 26327625 26327800 -216336553 + L2 LINE L2 3113 3313 0 211 376 40 10 chr1 26327905 26328006 -216336347 + L2 LINE L2 3193 3296 -17 2244 124 0 0 chr1 26328065 26328371 -216335982 + AluSx SINE Alu 1 306 -6 2563 72 0 0 chr1 26328374 26328678 -216335675 + AluY SINE Alu 2 305 -6 1710 161 48 65 chr1 26328808 26328977 -216335376 + MLT1B LTR MaLR 1 171 -219 2430 73 0 13 chr1 26328977 26329277 -216335076 + AluSg SINE Alu 1 296 -14 1710 161 48 65 chr1 26329277 26329504 -216334849 + MLT1B LTR MaLR 171 390 0 2202 110 7 17 chr1 26330273 26330574 -216333779 + AluSc SINE Alu 1 298 -11 2217 110 10 7 chr1 26330684 26330984 -216333369 + AluSx SINE Alu 1 301 -11 345 217 0 0 chr1 26331019 26331079 -216333274 - Tigger3(Golem) DNA MER2_type -2969 60 1 184 314 0 0 chr1 26331133 26331184 -216333169 - MIR SINE MIR -188 74 24 2124 131 3 0 chr1 26331599 26331896 -216332457 + AluSg SINE Alu 1 298 -12 2036 137 3 35 chr1 26332166 26332479 -216331874 + AluJb SINE Alu 1 303 -9 257 280 128 55 chr1 26332666 26332884 -216331469 - L2 LINE L2 0 3313 3080 1918 148 0 26 chr1 26333312 26333617 -216330736 + AluJb SINE Alu 1 297 -15 1530 168 37 37 chr1 26333632 26333929 -216330424 + AluJo SINE Alu 7 303 -9 3247 114 85 0 chr1 26334086 26334568 -216329785 + MER1A DNA MER1_type 5 527 0 2078 122 0 0 chr1 26335343 26335642 -216328711 + AluSg SINE Alu 1 299 0 256 232 16 96 chr1 26336349 26336417 -216327936 + L1MC/D LINE L1 5700 5755 -2053 2271 77 43 0 chr1 26336417 26336716 -216327637 + AluSp SINE Alu 1 312 -1 256 232 16 96 chr1 26336716 26336772 -216327581 + L1MC/D LINE L1 5755 5814 -1994 780 146 0 0 chr1 26336874 26336984 -216327369 + AluSq/x SINE Alu 6 115 -198 1499 220 63 35 chr1 26336984 26337242 -216327111 + LTR66 LTR ERVL 1 275 -335 2435 83 0 3 chr1 26337242 26337544 -216326809 + AluSq SINE Alu 1 301 -12 1499 220 63 35 chr1 26337544 26337681 -216326672 + LTR66 LTR ERVL 275 407 -203 1375 159 9 120 chr1 26337850 26338184 -216326169 + AluJb SINE Alu 2 298 -4 2365 92 7 0 chr1 26338408 26338712 -216325641 + AluSp SINE Alu 1 306 -7 1040 198 94 51 chr1 26338729 26339036 -216325317 - MLT1E2 LTR MaLR 0 626 334 2378 96 0 6 chr1 26339036 26339348 -216325005 - AluSg SINE Alu 0 310 1 1040 198 94 51 chr1 26339348 26339578 -216324775 - MLT1E2 LTR MaLR -292 334 1 2385 173 118 25 chr1 26339628 26340144 -216324209 + LTR6A LTR ERV1 1 564 0 2078 119 7 14 chr1 26340436 26340731 -216323622 + AluSx SINE Alu 2 294 -18 2236 124 0 0 chr1 26340904 26341210 -216323143 - AluSq SINE Alu -7 306 1 1224 181 165 0 chr1 26341467 26341727 -216322626 + AluSx SINE Alu 1 303 -9 811 133 33 40 chr1 26344025 26344176 -216320177 + AluSq/x SINE Alu 1 150 -163 254 218 57 81 chr1 26344511 26344635 -216319718 + MER8 DNA MER2_type 117 237 -2 1605 159 91 0 chr1 26345116 26345380 -216318973 + AluJb SINE Alu 1 288 -24 271 59 10 149 chr1 26345942 26346017 -216318336 + Alu SINE Alu 247 294 -8 2200 89 17 14 chr1 26346968 26347261 -216317092 - AluSg SINE Alu -15 295 2 331 175 32 16 chr1 26347938 26348001 -216316352 + MER5A DNA MER1_type 46 109 -80 2034 64 16 4 chr1 26348204 26348453 -216315900 - AluY SINE Alu -59 252 1 2135 120 0 0 chr1 26348513 26348805 -216315548 - AluSx SINE Alu -20 292 1 2124 85 89 0 chr1 26348824 26349105 -216315248 - AluSp SINE Alu -7 306 1 971 192 153 31 chr1 26349196 26349457 -216314896 - AluJo SINE Alu -9 293 1 287 129 129 14 chr1 26350354 26350424 -216313929 + AluJ/FRAM SINE Alu 215 292 -10 2173 99 7 0 chr1 26350637 26350921 -216313432 - AluSx SINE Alu -26 286 1 1745 145 19 62 chr1 26350978 26351302 -216313051 + AluJo SINE Alu 1 310 -2 606 215 0 39 chr1 26351409 26351539 -216312814 + FLAM_C SINE Alu 3 127 -6 1062 286 102 7 chr1 26351622 26351795 -216312558 - LTR33 LTR ERVL -47 474 319 1491 94 11 0 chr1 26351795 26351986 -216312367 + AluSq SINE Alu 1 193 -120 1062 286 102 7 chr1 26351986 26352245 -216312108 - LTR33 LTR ERVL -202 319 1 926 219 325 17 chr1 26352353 26352843 -216311510 + MLT1G1 LTR MaLR 1 590 0 2160 129 0 3 chr1 26352854 26353165 -216311188 - AluSx SINE Alu -2 310 1 1828 136 81 0 chr1 26353424 26353697 -216310656 - AluJb SINE Alu -12 300 6 2285 63 56 0 chr1 26353797 26354081 -216310272 - AluY SINE Alu -11 300 1 22 0 0 0 chr1 26354139 26354161 -216310192 + AT_rich Low_complexity Low_complexity 1 22 0 2293 90 0 29 chr1 26354173 26354485 -216309868 - AluSq SINE Alu -10 303 1 1890 102 0 0 chr1 26354546 26354791 -216309562 - AluSx SINE Alu -19 293 49 882 107 101 13 chr1 26354803 26354962 -216309391 - MER4A LTR ERV1 -489 175 3 683 275 25 10 chr1 26354965 26355165 -216309188 - L1MC/D LINE L1 -2144 5664 5462 490 277 140 60 chr1 26355192 26355407 -216308946 - L1MC/D LINE L1 -1527 4619 4366 2577 69 0 0 chr1 26355407 26355712 -216308641 - AluY SINE Alu -6 305 1 490 277 140 60 chr1 26355712 26355832 -216308521 - L1MC/D LINE L1 -1780 4366 4257 23 0 0 0 chr1 26356023 26356046 -216308307 + AT_rich Low_complexity Low_complexity 1 23 0 2348 102 0 3 chr1 26356046 26356349 -216308004 + AluSg SINE Alu 1 302 -8 791 173 0 0 chr1 26356353 26356486 -216307867 - FLAM_C SINE Alu 0 133 1 1852 188 68 113 chr1 26356576 26357278 -216307075 - LTR8A LTR ERV1 -15 712 42 362 288 6 56 chr1 26358107 26358267 -216306086 - MER5B DNA MER1_type 0 178 27 180 268 28 70 chr1 26358262 26358333 -216306020 - MIR3 SINE MIR -54 154 87 * 234 119 119 34 chr1 26358732 26358791 -216305562 + MER90 LTR ERV1 2 65 -549 1120 232 87 32 chr1 26358828 26358971 -216305382 + MER90 LTR ERV1 221 355 -259 2327 56 52 0 chr1 26358971 26359257 -216305096 + AluY SINE Alu 1 301 -10 1120 232 87 32 chr1 26359257 26359483 -216304870 + MER90 LTR ERV1 355 610 -4 1983 147 3 7 chr1 26359959 26360258 -216304095 + AluSx SINE Alu 1 298 -14 2373 104 0 0 chr1 26360285 26360584 -216303769 - AluSx SINE Alu -13 299 1 211 411 0 0 chr1 26360771 26360844 -216303509 + L2 LINE L2 2702 2774 -540 935 300 24 8 chr1 26361135 26361382 -216302971 + MIR SINE MIR 1 251 -11 2159 106 0 17 chr1 26361441 26361734 -216302619 + AluSx SINE Alu 1 288 -24 1020 146 146 38 chr1 26362251 26362464 -216301889 + MER46A DNA MER2_type 1 236 0 2260 103 0 22 chr1 26362765 26363076 -216301277 - AluSx SINE Alu -8 304 1 1647 191 14 0 chr1 26363081 26363374 -216300979 - AluJo SINE Alu -15 297 1 760 189 8 0 chr1 26363546 26363678 -216300675 - MER58B DNA MER1_type -2 339 207 467 269 47 13 chr1 26363748 26363897 -216300456 + MIR3 SINE MIR 40 193 -15 2215 106 33 7 chr1 26363900 26364203 -216300150 - AluSx SINE Alu -1 311 1 2479 75 0 0 chr1 26364206 26364499 -216299854 - AluSg SINE Alu -17 293 1 23 55 0 18 chr1 26364511 26364538 -216299815 + AT_rich Low_complexity Low_complexity 1 27 -27 2125 133 0 0 chr1 26364538 26364831 -216299522 - AluSx SINE Alu -19 293 1 23 55 0 18 chr1 26364831 26364858 -216299495 + AT_rich Low_complexity Low_complexity 27 54 0 265 181 0 121 chr1 26365483 26365519 -216298834 + MIR SINE MIR 190 212 -50 2047 151 0 7 chr1 26365519 26365817 -216298536 + AluJb SINE Alu 1 296 -16 265 181 0 121 chr1 26365817 26365863 -216298490 + MIR SINE MIR 212 262 0 2211 126 0 0 chr1 26365871 26366165 -216298188 - AluSx SINE Alu -18 294 1 620 124 0 170 chr1 26366217 26366370 -216297983 - FLAM_C SINE Alu -6 127 1 703 186 85 21 chr1 26367531 26367719 -216296634 - L1MC5 LINE L1 -93 7868 7669 2090 140 0 3 chr1 26367853 26368145 -216296208 + AluSx SINE Alu 1 291 -21 214 264 0 0 chr1 26368224 26368277 -216296076 + T-rich Low_complexity Low_complexity 3 55 0 854 121 38 8 chr1 26368316 26368448 -216295905 - AluJo SINE Alu -176 136 1 303 337 20 20 chr1 26368593 26368694 -216295659 + L1 LINE L1 3729 3829 -2317 1878 99 8 0 chr1 26368727 26368970 -216295383 - AluSg SINE Alu -22 288 44 234 349 130 9 chr1 26369070 26369285 -216295068 + MLT1L LTR MaLR 195 435 -180 437 106 0 160 chr1 26369364 26369405 -216294948 + MADE1 DNA Mariner 1 20 -60 2200 117 3 0 chr1 26369405 26369704 -216294649 - AluSx SINE Alu -11 301 2 437 106 0 160 chr1 26369704 26369756 -216294597 + MADE1 DNA Mariner 20 79 -1 377 331 42 36 chr1 26369811 26369977 -216294376 + L1 LINE L1 4315 4481 -1665 2160 110 10 13 chr1 26369985 26370285 -216294068 + AluSx SINE Alu 1 299 -13 1291 253 96 49 chr1 26370292 26370802 -216293551 + L1MEc LINE L1 29 562 -5834 276 254 15 0 chr1 26370805 26370872 -216293481 + MIR SINE MIR 145 212 -50 1314 245 83 10 chr1 26370927 26371514 -216292839 + L1MEc LINE L1 565 1218 -5178 401 274 72 26 chr1 26371554 26371707 -216292646 + MER113 DNA MER1_type? 251 410 -111 334 301 18 9 chr1 26372396 26372509 -216291844 + MIR SINE MIR 141 254 -8 747 247 59 36 chr1 26372586 26372677 -216291676 + MIR SINE MIR 15 102 -160 1896 178 42 29 chr1 26372677 26373060 -216291293 - MLT1B LTR MaLR -2 388 1 747 247 59 36 chr1 26373060 26373187 -216291166 + MIR SINE MIR 102 238 -24 2253 109 0 16 chr1 26373200 26373513 -216290840 - AluSg SINE Alu -1 309 2 2035 138 10 0 chr1 26374166 26374457 -216289896 + AluSx SINE Alu 1 294 -18 2133 94 3 39 chr1 26374824 26375133 -216289220 - AluSx SINE Alu -2 310 13 2866 7 0 3 chr1 26375335 26375642 -216288711 - AluYa5 SINE Alu -5 306 1 1560 179 47 24 chr1 26375646 26375943 -216288410 - AluJo SINE Alu -8 304 1 2255 122 0 0 chr1 26375952 26376248 -216288105 - AluSx SINE Alu -16 296 1 428 262 131 6 chr1 26376480 26376648 -216287705 - L1ME3 LINE L1 -7 6155 5967 1885 134 76 4 chr1 26376648 26376925 -216287428 - AluSx SINE Alu -15 297 1 683 144 25 25 chr1 26376944 26377062 -216287291 - FLAM_A SINE Alu -6 136 19 582 203 91 0 chr1 26377081 26377224 -216287129 - L1ME3 LINE L1 -173 5989 5834 199 245 0 19 chr1 26377224 26377277 -216287076 + L3 LINE CR1 1525 1576 -1 2472 96 0 0 chr1 26377558 26377861 -216286492 + AluSq SINE Alu 1 303 -10 268 263 70 26 chr1 26377861 26377975 -216286378 + MLT1G1-int LTR MaLR 1253 1371 0 271 284 125 0 chr1 26377975 26378063 -216286290 + MLT1G1 LTR MaLR 1 99 -496 2078 147 3 0 chr1 26378102 26378394 -216285959 + AluJb SINE Alu 1 293 -19 415 226 39 0 chr1 26378412 26378514 -216285839 - MLT1C LTR MaLR -25 442 337 2009 152 0 34 chr1 26378514 26378900 -216285453 - AluJb SINE Alu 0 375 1 323 202 71 30 chr1 26378900 26378999 -216285354 + MER21B LTR ERV1 4 106 -757 * 379 237 0 0 chr1 26378997 26379073 -216285280 + MER21B LTR ERV1 19 94 -769 * 3292 173 59 54 chr1 26379071 26379816 -216284537 + MER21B LTR ERV1 43 791 -72 1954 131 17 77 chr1 26379833 26379868 -216284485 + L1MB7 LINE L1 5797 5833 -351 2343 74 3 0 chr1 26379868 26380184 -216284169 + AluSp SINE Alu 1 317 0 1954 131 17 77 chr1 26380184 26380497 -216283856 + L1MB7 LINE L1 5833 6121 -63 2615 53 0 3 chr1 26380497 26380797 -216283556 - AluY SINE Alu -12 299 1 1954 131 17 77 chr1 26380797 26380850 -216283503 + L1MB7 LINE L1 6121 6176 -8 452 222 48 87 chr1 26381039 26381246 -216283107 - L2 LINE L2 -2 3311 3113 351 192 0 14 chr1 26381248 26381321 -216283032 - L2 LINE L2 -334 2938 2867 266 75 0 0 chr1 26381507 26381547 -216282806 + LTR5 LTR ERVK 766 805 -164 21 36 0 0 chr1 26381547 26381575 -216282778 + AT_rich Low_complexity Low_complexity 1 28 0 397 308 154 4 chr1 26381870 26382104 -216282249 - MLT1L LTR MaLR -5 610 342 2221 120 0 10 chr1 26382390 26382698 -216281655 - AluSx SINE Alu -7 305 1 228 161 36 18 chr1 26382740 26382796 -216281557 - MLT1I LTR MaLR -285 124 68 935 249 32 16 chr1 26382944 26383141 -216281212 + MIR SINE MIR 5 208 -54 2371 94 3 0 chr1 26383141 26383440 -216280913 + AluSx SINE Alu 1 300 -12 935 249 32 16 chr1 26383440 26383495 -216280858 + MIR SINE MIR 208 261 -1 739 153 73 0 chr1 26385074 26385198 -216279155 + MER5A DNA MER1_type 1 133 -56 1304 106 0 6 chr1 26385199 26385379 -216278974 - AluSg/x SINE Alu -5 305 127 2127 81 81 3 chr1 26385381 26385666 -216278687 - AluSc SINE Alu -2 307 1 587 142 236 0 chr1 26385666 26385793 -216278560 + MER58B DNA MER1_type 171 327 -14 2030 149 36 0 chr1 26386317 26386618 -216277735 - AluSx SINE Alu 0 312 1 189 353 87 20 chr1 26386628 26386778 -216277575 - MIR SINE MIR -5 257 98 2276 108 10 0 chr1 26386781 26387076 -216277277 + AluSp SINE Alu 1 298 -15 2069 136 0 26 chr1 26387834 26388144 -216276209 - AluSx SINE Alu -10 302 1 2377 142 37 22 chr1 26388146 26388555 -216275798 - MSTB LTR MaLR -9 417 3 1823 177 0 22 chr1 26389057 26389368 -216274985 + AluJb SINE Alu 1 304 -8 347 343 24 12 chr1 26389451 26389620 -216274733 - MIR SINE MIR -89 173 3 201 241 0 0 chr1 26391162 26391216 -216273137 + CT-rich Low_complexity Low_complexity 1 54 0 241 232 0 0 chr1 26391498 26391554 -216272799 + CT-rich Low_complexity Low_complexity 1 56 0 751 235 81 32 chr1 26393022 26393243 -216271110 + MIR SINE MIR 31 262 0 2057 131 3 10 chr1 26393344 26393642 -216270711 - AluSx SINE Alu -16 296 1 709 293 66 5 chr1 26394417 26394629 -216269724 + MIR SINE MIR 35 259 -3 359 241 43 57 chr1 26394809 26394950 -216269403 + MIR SINE MIR 6 144 -118 238 226 8 8 chr1 26395657 26395790 -216268563 + (TG)n Simple_repeat Simple_repeat 1 133 0 350 304 6 11 chr1 26395807 26395988 -216268365 + (TG)n Simple_repeat Simple_repeat 1 180 0 2153 121 0 3 chr1 26396038 26396336 -216268017 + AluSx SINE Alu 1 297 -15 468 283 11 0 chr1 26396408 26396585 -216267768 + (TG)n Simple_repeat Simple_repeat 1 179 0 488 282 86 41 chr1 26397655 26397875 -216266478 + MIR SINE MIR 33 262 0 288 250 66 0 chr1 26397896 26397972 -216266381 + L3 LINE CR1 1245 1325 -252 277 314 129 26 chr1 26397980 26398014 -216266339 - MIR SINE MIR -21 241 212 2048 116 17 3 chr1 26398014 26398307 -216266046 - AluSx SINE Alu -15 297 1 277 314 129 26 chr1 26398307 26398466 -216265887 - MIR SINE MIR -50 212 28 265 247 26 26 chr1 26398520 26398597 -216265756 + L2 LINE L2 3194 3270 -2 261 240 225 23 chr1 26398597 26398726 -216265627 + L3 LINE CR1 1422 1576 -1 658 183 73 19 chr1 26399036 26399086 -216265267 - MER63 DNA MER1_type -47 1014 968 1876 153 0 3 chr1 26399086 26399392 -216264961 + AluJb SINE Alu 1 305 0 658 183 73 19 chr1 26399392 26399647 -216264706 - MER63 DNA MER1_type -93 968 3 2390 92 7 0 chr1 26400382 26400685 -216263668 + AluSq SINE Alu 1 305 -8 2084 124 7 0 chr1 26400697 26401013 -216263340 - AluSx SINE Alu 0 318 1 776 194 0 0 chr1 26401024 26401148 -216263205 - FLAM_A SINE Alu -9 124 1 21 36 0 0 chr1 26401153 26401181 -216263172 + AT_rich Low_complexity Low_complexity 1 28 0 776 198 12 12 chr1 26401218 26401380 -216262973 - L1MA10 LINE L1 0 6334 6173 287 279 29 0 chr1 26401387 26401491 -216262862 - L1ME2 LINE L1 -163 6001 5895 2112 113 3 28 chr1 26401493 26401813 -216262540 - AluSx SINE Alu 0 312 1 1457 148 119 29 chr1 26401818 26402095 -216262258 - AluJo SINE Alu -10 302 1 1237 207 16 0 chr1 26402095 26402341 -216262012 - L1ME2 LINE L1 -340 5826 5577 2146 107 3 7 chr1 26402969 26403279 -216261074 - AluSx SINE Alu -3 309 1 2265 89 7 0 chr1 26404738 26405041 -216259312 - AluSx SINE Alu -6 306 2 2320 81 3 0 chr1 26405118 26405416 -216258937 - AluSg SINE Alu -11 299 1 246 127 36 55 chr1 26405450 26405505 -216258848 - MIR SINE MIR -76 132 79 483 250 48 0 chr1 26406534 26406658 -216257695 + MIR SINE MIR 97 226 -36 344 280 101 24 chr1 26406705 26406873 -216257480 - MIR SINE MIR -31 231 51 31 65 0 13 chr1 26407547 26407597 -216256756 + AT_rich Low_complexity Low_complexity 1 51 -25 1521 119 0 98 chr1 26407597 26407882 -216256471 - AluJb SINE Alu -25 287 31 31 65 0 13 chr1 26407882 26407908 -216256445 + AT_rich Low_complexity Low_complexity 51 76 0 2127 115 0 0 chr1 26408465 26408769 -216255584 + AluSq SINE Alu 1 304 -9 423 231 250 45 chr1 26408769 26408925 -216255428 - MIR SINE MIR -12 250 63 2393 74 0 0 chr1 26409110 26409419 -216254934 + AluY SINE Alu 1 309 -2 1011 217 45 9 chr1 26409428 26409649 -216254704 + MIR SINE MIR 34 262 0 2272 113 0 0 chr1 26409863 26410174 -216254179 - AluSx SINE Alu -1 311 1 229 292 97 0 chr1 26410183 26410255 -216254098 - L2 LINE L2 -1 3312 3234 2144 82 32 0 chr1 26410296 26410578 -216253775 - AluSg SINE Alu -19 291 1 629 313 51 0 chr1 26410857 26411052 -216253301 - MIR SINE MIR -48 214 10 238 263 42 76 chr1 26411254 26411372 -216252981 + L2 LINE L2 3151 3264 -8 2518 155 16 32 chr1 26411472 26411791 -216252562 + MSTB LTR MaLR 1 313 -113 2202 106 0 6 chr1 26411791 26412103 -216252250 - AluSx SINE Alu -2 310 1 2518 155 16 32 chr1 26412103 26412216 -216252137 + MSTB LTR MaLR 313 426 0 2239 109 81 62 chr1 26412393 26412582 -216251771 + MSTA LTR MaLR 1 185 -243 2128 115 7 0 chr1 26412582 26412887 -216251466 + AluSc SINE Alu 1 307 -2 2239 109 81 62 chr1 26412887 26413117 -216251236 + MSTA LTR MaLR 185 428 0 2446 107 22 25 chr1 26413168 26413533 -216250820 - THE1B LTR MaLR 0 364 1 2931 198 33 36 chr1 26413580 26414283 -216250070 - L1MB8 LINE L1 0 6178 5478 1064 142 0 6 chr1 26414325 26414494 -216249859 - AluJb SINE Alu -2 310 143 293 286 143 15 chr1 26414509 26414642 -216249711 - MIR SINE MIR -11 251 102 2020 163 25 0 chr1 26416272 26416598 -216247755 + MLT2C1 LTR ERVL 3 336 -61 864 176 0 0 chr1 26416598 26416768 -216247585 + (TCCA)n Simple_repeat Simple_repeat 4 173 0 342 111 19 0 chr1 26416770 26416824 -216247529 + MLT2C1 LTR ERVL 500 554 0 202 292 0 0 chr1 26416919 26416967 -216247386 + L2 LINE L2 3209 3256 -16 1358 195 26 89 chr1 26417372 26417752 -216246601 - L1ME3 LINE L1 -53 6109 5754 1761 158 3 0 chr1 26417772 26418070 -216246283 - AluJo SINE Alu -13 299 1 572 259 197 73 chr1 26418309 26418814 -216245539 - L2 LINE L2 0 3313 2703 1936 117 3 7 chr1 26418814 26419203 -216245150 - AluSx SINE Alu 0 388 1 572 259 197 73 chr1 26419203 26419377 -216244976 - L2 LINE L2 -610 2703 2552 589 225 127 80 chr1 26419397 26419554 -216244799 + MIR SINE MIR 13 184 -78 1692 156 23 13 chr1 26419554 26419856 -216244497 - AluJo SINE Alu -7 305 1 589 225 127 80 chr1 26419856 26419911 -216244442 + MIR SINE MIR 184 235 -27 241 315 99 25 chr1 26419941 26420103 -216244250 - L2 LINE L2 -789 2525 2352 249 224 0 0 chr1 26420578 26420636 -216243717 + CT-rich Low_complexity Low_complexity 4 61 0 201 74 0 0 chr1 26420672 26420699 -216243654 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 438 36 0 0 chr1 26420732 26420788 -216243565 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 409 266 125 0 chr1 26420856 26420984 -216243369 - MIR3 SINE MIR -30 178 35 1192 209 44 113 chr1 26421166 26421708 -216242645 - LTR22 LTR ERVK -4 505 1 231 216 307 0 chr1 26422014 26422102 -216242251 + MIR SINE MIR 22 136 -72 190 309 217 20 chr1 26422687 26422839 -216241514 + L2 LINE L2 2804 2985 -328 315 122 0 0 chr1 26423075 26423124 -216241229 + (TCCC)n Simple_repeat Simple_repeat 1 49 0 373 150 14 9 chr1 26423124 26423141 -216241212 - L1MC3 LINE L1 -753 7032 7017 1247 84 6 0 chr1 26423141 26423319 -216241034 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 373 150 14 9 chr1 26423319 26423392 -216240961 - L1MC3 LINE L1 -768 7017 6966 1750 60 0 26 chr1 26423406 26423638 -216240715 - AluY SINE Alu -12 299 74 4055 168 69 27 chr1 26423696 26424273 -216240080 - L1MB5 LINE L1 0 6174 5623 1666 119 53 69 chr1 26424273 26424576 -216239777 + AluSx SINE Alu 1 298 -14 4055 168 69 27 chr1 26424576 26424728 -216239625 - L1MB5 LINE L1 -551 5623 5479 1467 145 42 28 chr1 26424728 26425017 -216239336 - L1MA8 LINE L1 -4 6287 5995 4055 168 69 27 chr1 26425017 26425479 -216238874 - L1MB5 LINE L1 -695 5479 4928 25 31 0 0 chr1 26425480 26425512 -216238841 + AT_rich Low_complexity Low_complexity 1 32 0 946 236 144 0 chr1 26426321 26426592 -216237761 - L1MC4 LINE L1 -200 7842 7533 537 145 0 0 chr1 26426597 26426673 -216237680 - AluJ/FLAM SINE Alu -235 77 2 5724 165 65 47 chr1 26426681 26427629 -216236724 - L1MC1 LINE L1 0 6333 5403 949 218 0 0 chr1 26427629 26427799 -216236554 - FAM SINE Alu -5 170 1 5724 165 65 47 chr1 26427799 26428687 -216235666 - L1MC1 LINE L1 -930 5403 4532 2019 142 0 0 chr1 26428687 26428996 -216235357 - AluSx SINE Alu -3 309 1 5724 165 65 47 chr1 26428996 26429342 -216235011 - L1MC1 LINE L1 -1801 4532 4194 274 103 0 0 chr1 26429342 26429381 -216234972 + U2 snRNA snRNA 1 39 -149 5724 165 65 47 chr1 26429381 26429580 -216234773 - L1MC1 LINE L1 -2139 4194 3850 1377 169 77 7 chr1 26429568 26429840 -216234513 - L1MC4 LINE L1 -1009 7033 6743 * 467 278 104 12 chr1 26429960 26430133 -216234220 - L2 LINE L2 -942 2372 2184 411 156 111 11 chr1 26430200 26430290 -216234063 + MIR SINE MIR 115 213 -49 884 249 93 88 chr1 26430532 26431446 -216232907 - L1ME3A LINE L1 -114 6056 5148 2697 90 3 8 chr1 26431446 26431822 -216232531 + L1PB1 LINE L1 5776 6149 -2 884 249 93 88 chr1 26431822 26432124 -216232229 - L1ME3A LINE L1 -1022 5148 4849 2243 99 0 0 chr1 26432124 26432428 -216231925 - AluSx SINE Alu -8 304 1 884 249 93 88 chr1 26432428 26432950 -216231403 - L1ME3A LINE L1 -1321 4849 4315 25 51 0 0 chr1 26433078 26433117 -216231236 + AT_rich Low_complexity Low_complexity 1 39 0 2087 104 13 0 chr1 26433131 26433439 -216230914 + AluSx SINE Alu 1 312 0 981 231 77 126 chr1 26433473 26433966 -216230387 - L1ME3A LINE L1 -1812 4334 3818 1762 137 29 35 chr1 26433966 26434280 -216230073 - AluJb SINE Alu 0 312 1 2062 115 7 7 chr1 26434282 26434577 -216229776 - AluSq SINE Alu -16 297 3 981 231 77 126 chr1 26434577 26435282 -216229071 - L1ME3A LINE L1 -2329 3817 3211 271 180 191 0 chr1 26435309 26435398 -216228955 - L1MC4 LINE L1 -4 8021 7916 307 105 53 13 chr1 26435405 26435481 -216228872 + CT-rich Low_complexity Low_complexity 1 79 0 1119 267 16 26 chr1 26435486 26435864 -216228489 - L1MC4 LINE L1 -146 7879 7506 2832 216 59 10 chr1 26435866 26436458 -216227895 + MLT1E2 LTR MaLR 6 626 0 289 263 155 7 chr1 26436458 26436730 -216227623 - L1MC4 LINE L1 -514 7511 2947 911 130 26 0 chr1 26436730 26436884 -216227469 - BC200 scRNA scRNA -42 158 1 768 283 125 40 chr1 26436884 26437020 -216227333 - L1MC4 LINE L1 -3167 2962 2839 2164 88 20 0 chr1 26437020 26437315 -216227038 - AluY SINE Alu -10 301 1 768 283 125 40 chr1 26437315 26437875 -216226478 - L1MC4 LINE L1 -3290 2839 2207 328 281 97 49 chr1 26437902 26438087 -216226266 - L1MC4 LINE L1 -4003 2126 1933 1602 151 13 37 chr1 26438220 26438518 -216225835 - AluJo SINE Alu -21 291 1 1541 256 87 76 chr1 26438575 26438988 -216225365 - L1MC4 LINE L1 -4584 1726 1319 905 199 0 11 chr1 26438988 26439179 -216225174 - MER53 DNA DNA 0 189 1 1541 256 87 76 chr1 26439179 26439598 -216224755 - L1MC4 LINE L1 -4991 1319 906 2035 120 13 3 chr1 26439598 26439897 -216224456 - AluSx SINE Alu -10 302 1 1541 256 87 76 chr1 26439897 26440507 -216223846 - L1MC4 LINE L1 -5404 906 266 334 311 43 0 chr1 26440536 26440697 -216223656 - L1MC4 LINE L1 -5941 178 11 513 236 16 31 chr1 26440845 26440972 -216223381 - L2 LINE L2 0 3272 3148 729 260 59 5 chr1 26440985 26441189 -216223164 - MIR SINE MIR -40 222 8 460 244 0 24 chr1 26441618 26441741 -216222612 + MIR3 SINE MIR 88 207 -1 218 316 158 43 chr1 26441888 26442122 -216222231 + L2 LINE L2 2972 3232 -40 423 0 0 0 chr1 26442212 26442259 -216222094 + (TA)n Simple_repeat Simple_repeat 2 48 0 453 233 155 78 chr1 26442309 26442580 -216221773 - L1ME4a LINE L1 -23 6098 5807 2188 71 4 4 chr1 26442887 26443214 -216221139 - AluSx SINE Alu 0 327 1 772 141 0 0 chr1 26444476 26444604 -216219749 - L1MD1 LINE L1 -1 6241 6114 320 210 0 0 chr1 26444611 26444673 -216219680 + AluS SINE Alu 1 62 -241 239 154 0 0 chr1 26444701 26444753 -216219600 - L1MC4 LINE L1 -1339 6703 6652 327 25 0 0 chr1 26444783 26444823 -216219530 + (GA)n Simple_repeat Simple_repeat 2 41 0 1943 89 7 29 chr1 26444823 26445103 -216219250 + AluSc SINE Alu 16 289 -20 529 14 29 0 chr1 26445103 26445173 -216219180 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 3918 148 75 18 chr1 26445186 26445835 -216218518 - L1MD1 LINE L1 -133 6109 5413 615 155 13 45 chr1 26445835 26445990 -216218363 - L1MA5 LINE L1 0 6300 6151 3918 148 75 18 chr1 26445990 26446064 -216218289 - L1MD1 LINE L1 -829 5413 5345 2201 94 0 7 chr1 26446207 26446505 -216217848 + AluSx SINE Alu 1 296 -16 540 220 191 14 chr1 26446610 26446819 -216217534 - LTR50 LTR ERVL -291 504 259 290 222 74 37 chr1 26446817 26446853 -216217500 - LTR50 LTR ERVL -55 740 707 * 185 0 40 0 chr1 26446853 26446878 -216217475 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2296 63 0 0 chr1 26446880 26447164 -216217189 - AluSg SINE Alu -26 284 1 290 222 74 37 chr1 26447164 26447232 -216217121 - LTR50 LTR ERVL -88 707 629 1108 221 290 0 chr1 26447273 26447680 -216216673 - LTR50 LTR ERVL -270 525 1 700 290 50 9 chr1 26447686 26447907 -216216446 + MIR SINE MIR 20 249 -13 526 309 36 6 chr1 26447979 26448147 -216216206 + MIR3 SINE MIR 9 181 -27 247 245 0 0 chr1 26448363 26448416 -216215937 + GA-rich Low_complexity Low_complexity 2 54 0 2448 55 7 0 chr1 26448523 26448832 -216215521 - AluY SINE Alu 0 311 1 364 247 39 57 chr1 26448832 26448995 -216215358 + MER5A DNA MER1_type 15 185 -4 409 202 0 216 chr1 26449082 26449290 -216215063 - MIR SINE MIR 0 262 100 210 310 35 11 chr1 26449687 26449774 -216214579 + L3b LINE CR1 1298 1386 -197 573 272 57 31 chr1 26449803 26450031 -216214322 + MIR SINE MIR 29 262 0 1485 163 6 62 chr1 26450047 26450393 -216213960 + AluJo SINE Alu 1 312 0 277 232 106 28 chr1 26450656 26450798 -216213555 - L2 LINE L2 -335 2978 2826 191 167 0 0 chr1 26651350 26651386 -216012967 - MIR SINE MIR -118 144 109 469 266 95 28 chr1 26651390 26651642 -216012711 - LTR37B LTR ERV1 -3 465 197 2204 100 4 0 chr1 26651721 26652037 -216012316 + AluSq SINE Alu 1 317 0 273 279 32 52 chr1 26652054 26652071 -216012282 - LTR37B LTR ERV1 -317 151 135 1882 159 14 0 chr1 26652071 26652361 -216011992 + AluJb SINE Alu 1 294 -18 273 279 32 52 chr1 26652361 26652497 -216011856 - LTR37B LTR ERV1 -333 135 1 2318 129 0 0 chr1 26652644 26652954 -216011399 + AluSx SINE Alu 1 310 -2 812 193 18 41 chr1 26652975 26653146 -216011207 + FRAM SINE Alu 1 40 0 309 330 9 18 chr1 26653149 26653258 -216011095 - MIR SINE MIR -71 137 30 1817 178 20 0 chr1 26653686 26653989 -216010364 - AluSx SINE Alu -3 309 1 2191 99 0 7 chr1 26654119 26654456 -216009897 - AluSg SINE Alu 0 335 1 839 231 37 63 chr1 26654536 26654804 -216009549 - MIR SINE MIR 0 262 2 637 284 39 15 chr1 26655373 26655577 -216008776 + MIR SINE MIR 50 258 -4 4724 45 26 0 chr1 26656228 26656804 -216007549 - LTR10C LTR ERV1 0 591 1 513 211 7 70 chr1 26656813 26657099 -216007254 + MER4C LTR ERV1 1 349 -315 440 166 191 127 chr1 26657068 26657127 -216007226 + MER4C LTR ERV1 165 219 -246 * 2179 107 4 0 chr1 26657127 26657430 -216006923 - AluSx SINE Alu 0 307 4 440 166 191 127 chr1 26657430 26657652 -216006701 + MER4C LTR ERV1 219 465 0 24 32 0 0 chr1 26657919 26657950 -216006403 + AT_rich Low_complexity Low_complexity 1 31 0 6376 118 5 53 chr1 26657952 26658093 -216006260 - L1MC1 LINE L1 -6 6327 6181 1679 123 12 0 chr1 26658093 26658336 -216006017 - AluSx SINE Alu -8 304 59 6376 118 5 53 chr1 26658336 26658565 -216005788 - L1MC1 LINE L1 -152 6181 5943 2271 101 3 19 chr1 26658565 26658872 -216005481 - AluSx SINE Alu -10 302 1 6376 118 5 53 chr1 26658872 26659539 -216004814 - L1MC1 LINE L1 -390 5943 5245 2103 118 4 0 chr1 26659539 26659856 -216004497 - AluSg SINE Alu 0 318 1 6376 118 5 53 chr1 26659856 26659884 -216004469 - L1MC1 LINE L1 -1088 5245 5217 2571 77 0 0 chr1 26659884 26660195 -216004158 - AluY SINE Alu 0 311 1 6376 118 5 53 chr1 26660195 26660319 -216004034 - L1MC1 LINE L1 -1116 5217 5186 560 122 0 0 chr1 26660380 26660454 -216003899 + AluS SINE Alu 3 76 -237 1278 136 0 0 chr1 26660556 26660733 -216003620 + AluSg/x SINE Alu 129 305 -7 1917 148 7 7 chr1 26660743 26661040 -216003313 + AluJb SINE Alu 1 297 -15 1116 154 0 28 chr1 26661127 26661309 -216003044 + AluJo SINE Alu 127 303 -9 435 279 137 6 chr1 26661498 26661659 -216002694 + MIR SINE MIR 74 255 -7 1902 162 0 0 chr1 26662093 26662371 -216001982 + AluJb SINE Alu 1 278 -34 198 0 0 0 chr1 26662371 26662393 -216001960 + (TC)n Simple_repeat Simple_repeat 1 22 0 386 358 88 35 chr1 26662463 26662548 -216001805 - L2 LINE L2 -339 2975 2896 2276 94 7 10 chr1 26662548 26662847 -216001506 + AluSc SINE Alu 1 298 -11 386 358 88 35 chr1 26662847 26663046 -216001307 - L2 LINE L2 -418 2896 2676 434 243 61 40 chr1 26663068 26663216 -216001137 + MER58C DNA MER1_type 39 189 -26 2516 74 0 0 chr1 26663639 26663937 -216000416 + AluSc SINE Alu 1 298 -11 28 0 0 0 chr1 26664132 26664160 -216000193 + AT_rich Low_complexity Low_complexity 1 28 0 180 77 0 0 chr1 26665946 26665972 -215998381 + (TATATG)n Simple_repeat Simple_repeat 5 30 0 220 245 20 0 chr1 26667745 26667794 -215996559 - L2 LINE L2 -1 3312 3263 235 195 0 0 chr1 26667934 26667975 -215996378 + L2 LINE L2 3261 3301 -12 2204 103 7 10 chr1 26669828 26670120 -215994233 + AluSq SINE Alu 7 297 -16 284 169 31 0 chr1 26670120 26670185 -215994168 + L1ME3A LINE L1 6099 6165 -5 387 286 254 5 chr1 26670242 26670431 -215993922 + MIR SINE MIR 20 255 -7 200 213 0 64 chr1 26670930 26670977 -215993376 + MER5B DNA MER1_type 1 44 -134 900 283 147 3 chr1 26671002 26671295 -215993058 + L1MEc LINE L1 36 370 -6026 200 217 0 0 chr1 26671324 26671370 -215992983 + T-rich Low_complexity Low_complexity 1 46 0 1662 182 7 10 chr1 26671423 26671714 -215992639 + AluJb SINE Alu 1 290 -22 189 0 0 0 chr1 26671734 26671755 -215992598 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 258 95 0 0 chr1 26671754 26671796 -215992557 + (CA)n Simple_repeat Simple_repeat 1 42 0 762 245 93 31 chr1 26671799 26672056 -215992297 + L1MEc LINE L1 419 691 -5705 1235 177 9 0 chr1 26672061 26672287 -215992066 - LTR54 LTR ERV1 -7 503 276 30 27 0 0 chr1 26672754 26672791 -215991562 + AT_rich Low_complexity Low_complexity 1 37 0 1152 168 62 16 chr1 26672805 26673049 -215991304 - LTR54B LTR ERV1 -243 255 1 353 196 75 0 chr1 26673060 26673167 -215991186 + L1MEc LINE L1 701 815 -5581 1868 147 3 48 chr1 26673177 26673491 -215990862 + AluJo SINE Alu 1 300 -12 7316 152 78 37 chr1 26673493 26674731 -215989622 + L1MCa LINE L1 18 1335 -5091 1992 137 43 3 chr1 26674731 26675030 -215989323 - AluJb SINE Alu -1 311 1 7316 152 78 37 chr1 26675030 26675374 -215988979 + L1MCa LINE L1 1335 1664 -4762 515 188 161 0 chr1 26675374 26675486 -215988867 + AluJ SINE Alu 1 130 -172 1027 122 6 64 chr1 26675490 26675514 -215988839 + AluJ SINE Alu 129 153 -159 2741 164 40 8 chr1 26675514 26675985 -215988368 + MER66B LTR ERV1 1 486 0 1027 122 6 64 chr1 26675985 26676132 -215988221 + AluJ SINE Alu 153 290 -22 833 235 62 49 chr1 26676143 26676260 -215988093 + AluSq SINE Alu 2 116 -197 258 32 0 0 chr1 26676260 26676291 -215988062 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1505 125 177 4 chr1 26676295 26676543 -215987810 + AluSg1 SINE Alu 5 295 -14 833 235 62 49 chr1 26676543 26676663 -215987690 + AluSq SINE Alu 118 247 -66 583 146 11 0 chr1 26676693 26676782 -215987571 - FRAM/FAM SINE Alu -95 90 1 772 138 0 0 chr1 26676789 26676898 -215987455 - AluSg/x SINE Alu -12 300 192 1258 135 0 0 chr1 26677000 26677178 -215987175 + AluSg/x SINE Alu 131 308 -4 197 320 0 0 chr1 26677303 26677353 -215987000 - MIR SINE MIR -83 125 76 2423 81 7 0 chr1 26677654 26677963 -215986390 - AluSp SINE Alu -2 311 1 393 269 21 103 chr1 26678024 26678266 -215986087 + L2 LINE L2 2953 3174 -139 807 204 0 0 chr1 26678268 26678400 -215985953 - FLAM_C SINE Alu -1 132 1 318 26 0 0 chr1 26678406 26678445 -215985908 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 1844 159 27 0 chr1 26678452 26678748 -215985605 - AluJo SINE Alu -8 304 1 2069 145 0 3 chr1 26678756 26679059 -215985294 - AluSx SINE Alu -10 302 1 602 216 74 28 chr1 26679066 26679242 -215985111 + L2 LINE L2 3118 3301 -12 2534 80 0 6 chr1 26679268 26679582 -215984771 + AluSx SINE Alu 1 312 0 718 178 10 122 chr1 26679716 26679913 -215984440 + MIR SINE MIR 49 223 -39 244 254 70 28 chr1 26679937 26680008 -215984345 - MIR SINE MIR -21 241 168 323 289 52 10 chr1 26680012 26680109 -215984244 + L1ME3A LINE L1 6065 6165 -5 362 247 0 0 chr1 26680127 26680208 -215984145 - MIR SINE MIR -84 178 98 776 224 20 7 chr1 26680210 26680362 -215983991 + AluSg/x SINE Alu 119 272 -40 2140 116 3 14 chr1 26680378 26680683 -215983670 + AluSx SINE Alu 1 302 0 347 277 8 39 chr1 26680816 26680946 -215983407 - L1ME LINE L1 -368 5753 5628 191 261 174 0 chr1 26680949 26681012 -215983341 - MIR SINE MIR -76 132 58 249 220 153 0 chr1 26681012 26681071 -215983282 + MER91A DNA MER1_type 2 69 -127 721 274 151 31 chr1 26681249 26681600 -215982753 - L2 LINE L2 0 3313 2921 1885 185 0 6 chr1 26681716 26682030 -215982323 - AluJb SINE Alu 0 312 1 221 179 39 141 chr1 26682265 26682343 -215982010 + MIR SINE MIR 7 76 -186 799 293 8 26 chr1 26682662 26682928 -215981425 - MIR SINE MIR 0 262 2 1470 134 9 17 chr1 26683659 26683890 -215980463 + AluJo SINE Alu 40 268 -44 230 196 0 0 chr1 26684003 26684054 -215980299 + AluJo SINE Alu 250 300 0 427 280 40 0 chr1 26684118 26684218 -215980135 - L2 LINE L2 -8 3305 3202 992 179 40 31 chr1 26684300 26684523 -215979830 - L1ME3 LINE L1 -1 6161 5937 229 238 250 52 chr1 26684542 26684649 -215979704 - L1ME3 LINE L1 -289 5832 5747 2112 129 0 39 chr1 26684649 26684960 -215979393 + AluSx SINE Alu 1 299 -13 229 238 250 52 chr1 26684960 26685024 -215979329 - L1ME3 LINE L1 -374 5747 5627 271 317 135 0 chr1 26685675 26685883 -215978470 + L2 LINE L2 2461 2696 -618 2250 136 0 0 chr1 26685883 26686185 -215978168 - AluSx SINE Alu -10 302 1 1731 181 3 20 chr1 26686247 26686551 -215977802 + AluJo SINE Alu 13 311 -1 2407 151 7 31 chr1 26686574 26686791 -215977562 + L1MB3 LINE L1 5751 5972 -211 2292 102 0 7 chr1 26686791 26687094 -215977259 + AluSq SINE Alu 1 301 -12 2407 151 7 31 chr1 26687094 26687197 -215977156 + L1MB3 LINE L1 5972 6076 -107 2045 156 3 0 chr1 26687197 26687499 -215976854 + AluSx SINE Alu 3 305 -7 2407 151 7 31 chr1 26687499 26687621 -215976732 + L1MB3 LINE L1 6076 6183 0 232 297 94 94 chr1 26687974 26688054 -215976299 + L2 LINE L2 2956 3035 -278 2023 118 9 50 chr1 26688054 26688375 -215975978 + AluSx SINE Alu 1 308 -4 232 297 94 94 chr1 26688375 26688560 -215975793 + L2 LINE L2 3034 3221 -92 350 186 139 0 chr1 26688562 26688648 -215975705 + MLT1A1 LTR MaLR 2 99 -266 2476 48 0 35 chr1 26690503 26690819 -215973534 + AluY SINE Alu 1 305 -6 926 245 51 16 chr1 26691182 26691435 -215972918 + MIR SINE MIR 1 262 0 182 308 176 47 chr1 26692638 26692874 -215971479 - L2 LINE L2 -2 3270 3066 2976 0 0 0 chr1 26692874 26693185 -215971168 + AluYa5 SINE Alu 1 311 0 182 308 176 47 chr1 26693185 26693328 -215971025 - L2 LINE L2 -206 3066 2842 2264 77 40 0 chr1 26693358 26693656 -215970697 - AluSg SINE Alu 0 310 1 301 282 160 26 chr1 26693906 26694062 -215970291 - MIR SINE MIR -12 250 74 224 302 47 0 chr1 26694241 26694347 -215970006 - MIR3 SINE MIR -24 184 74 34 72 0 0 chr1 26694497 26694566 -215969787 + GC_rich Low_complexity Low_complexity 1 69 0 359 246 145 36 chr1 26695877 26696015 -215968338 - MIR3 SINE MIR -8 200 48 263 128 0 0 chr1 26696015 26696062 -215968291 - AluSg SINE Alu -1 307 261 2496 80 0 6 chr1 26696120 26696432 -215967921 + AluSx SINE Alu 1 310 -2 359 279 59 7 chr1 26697608 26697744 -215966609 - MIR3 SINE MIR -33 175 33 457 264 40 20 chr1 26698657 26698805 -215965548 - MIR SINE MIR -27 235 85 1685 104 39 0 chr1 26698809 26699039 -215965314 - AluSg SINE Alu -44 266 28 2156 103 34 0 chr1 26699152 26699444 -215964909 + AluSx SINE Alu 1 302 -10 309 259 82 10 chr1 26700575 26700677 -215963676 + MIR SINE MIR 44 152 -110 2096 153 0 6 chr1 26701657 26701970 -215962383 - AluJb SINE Alu -1 311 1 722 276 9 32 chr1 26702065 26702282 -215962071 - MIR SINE MIR 0 262 51 2255 196 24 41 chr1 26702614 26702666 -215961687 - Zaphod DNA AcHobo -123 3908 3857 1694 168 7 20 chr1 26702666 26702963 -215961390 + AluJo SINE Alu 1 293 -19 2255 196 24 41 chr1 26702963 26703351 -215961002 - Zaphod DNA AcHobo -174 3857 3480 2290 96 27 3 chr1 26703351 26703652 -215960701 + AluSx SINE Alu 5 312 0 2255 196 24 41 chr1 26703652 26703842 -215960511 - Zaphod DNA AcHobo -551 3480 3288 541 224 24 0 chr1 26703851 26703975 -215960378 - Zaphod DNA AcHobo -3371 660 534 1419 118 63 37 chr1 26703975 26704191 -215960162 - Tigger7 DNA MER2_type 0 2587 2361 2354 97 0 3 chr1 26704191 26704489 -215959864 + AluSg SINE Alu 1 297 -13 1419 118 63 37 chr1 26704489 26704543 -215959810 - Tigger7 DNA MER2_type -226 2361 2310 1025 153 6 0 chr1 26704548 26704718 -215959635 - Tigger7 DNA MER2_type -562 171 1 1684 230 26 67 chr1 26704725 26705191 -215959162 - Zaphod DNA AcHobo -3526 505 59 818 166 77 47 chr1 26705191 26705207 -215959146 - AluJo/FRAM SINE Alu -1 311 297 2468 82 0 0 chr1 26705207 26705510 -215958843 - AluSq SINE Alu -1 312 10 818 166 77 47 chr1 26705510 26705662 -215958691 - AluJo/FRAM SINE Alu -15 297 138 476 210 59 17 chr1 26706042 26706161 -215958192 + MIR3 SINE MIR 36 159 -49 854 150 0 0 chr1 26706225 26706358 -215957995 + FLAM_C SINE Alu 1 133 0 270 321 0 12 chr1 26706371 26706452 -215957901 - MER5B DNA MER1_type -32 146 67 430 309 22 11 chr1 26706452 26706630 -215957723 + ERVL LTR ERVL 1024 1203 -4451 2277 111 0 3 chr1 26706691 26706989 -215957364 + AluSx SINE Alu 1 297 -15 946 345 64 6 chr1 26707172 26707705 -215956648 + ERVL LTR ERVL 1298 1861 -3793 1362 262 77 50 chr1 26707783 26708088 -215956265 + L2 LINE L2 2331 2626 -687 2114 136 3 3 chr1 26708088 26708390 -215955963 - AluSx SINE Alu -10 302 1 1362 262 77 50 chr1 26708390 26708755 -215955598 + L2 LINE L2 2626 3013 -300 1379 78 12 0 chr1 26708757 26708924 -215955429 - AluSc SINE Alu -20 289 121 819 145 0 48 chr1 26708960 26709105 -215955248 + FLAM_C SINE Alu 6 143 0 601 293 75 0 chr1 26709121 26709333 -215955020 - LTR16A LTR ERVL -163 287 60 448 349 7 0 chr1 26709416 26709568 -215954785 + ERVL LTR ERVL 4779 4931 -833 769 126 0 70 chr1 26709583 26709726 -215954627 + FLAM_C SINE Alu 1 133 0 2157 116 34 0 chr1 26709821 26710115 -215954238 + AluSx SINE Alu 2 305 -7 509 341 19 0 chr1 26710636 26710850 -215953503 + LTR16A LTR ERVL 70 287 -163 345 329 25 13 chr1 26711411 26711569 -215952784 - MIR SINE MIR -22 240 81 244 253 160 0 chr1 26711587 26711662 -215952691 - MIR SINE MIR -4 258 172 324 251 186 39 chr1 26711683 26711962 -215952391 - L1MEd LINE L1 -3673 2456 2137 2336 99 0 0 chr1 26712052 26712344 -215952009 - AluSq SINE Alu -21 292 1 597 318 66 28 chr1 26712440 26712569 -215951784 - L1MEd LINE L1 -5138 981 858 1880 167 6 6 chr1 26712569 26712880 -215951473 - AluJb SINE Alu -1 311 1 597 318 66 28 chr1 26712880 26713247 -215951106 - L1MEd LINE L1 -5261 858 466 2415 105 0 0 chr1 26713270 26713574 -215950779 - AluSx SINE Alu -8 304 1 2267 112 0 10 chr1 26713586 26713889 -215950464 - AluSc SINE Alu -9 300 1 279 0 0 0 chr1 26713989 26714020 -215950333 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1578 166 48 4 chr1 26714022 26714293 -215950060 - AluJb SINE Alu -29 283 1 319 311 106 13 chr1 26714498 26714649 -215949704 - L1MEd LINE L1 -5944 175 11 2431 90 0 0 chr1 26714650 26714949 -215949404 - AluSq SINE Alu -14 299 1 239 202 95 24 chr1 26715068 26715152 -215949201 - MIR SINE MIR -56 206 117 2473 35 45 3 chr1 26715158 26715448 -215948905 - AluY SINE Alu -9 302 1 2268 99 30 0 chr1 26715768 26716071 -215948282 - AluSx SINE Alu 0 312 1 934 120 0 0 chr1 26716075 26716200 -215948153 - AluJb SINE Alu -187 125 1 782 263 45 12 chr1 26716296 26716539 -215947814 + MIR SINE MIR 12 262 0 2029 150 13 19 chr1 26716642 26716956 -215947397 + AluJb SINE Alu 1 312 0 275 131 70 0 chr1 26716958 26717020 -215947333 + FLAM_A SINE Alu 25 59 -73 221 57 29 0 chr1 26717054 26717089 -215947264 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 186 226 0 38 chr1 26717766 26717819 -215946534 - L3 LINE CR1 0 1577 1527 1404 85 0 0 chr1 26717891 26718068 -215946285 - AluSg/x SINE Alu -3 309 133 2033 151 0 7 chr1 26718069 26718368 -215945985 - AluSx SINE Alu -15 297 1 2264 95 7 3 chr1 26718368 26718662 -215945691 - AluSg SINE Alu -14 296 1 2420 94 0 3 chr1 26719156 26719465 -215944888 - AluSg SINE Alu 0 310 3 2422 84 0 3 chr1 26719467 26719764 -215944589 - AluSq SINE Alu -17 296 1 4870 244 92 32 chr1 26719765 26720172 -215944181 - L1M4 LINE L1 -1095 5051 4670 1603 82 0 5 chr1 26720172 26720367 -215943986 - AluSg SINE Alu -116 194 1 4870 244 92 32 chr1 26720367 26721490 -215942863 - L1M4 LINE L1 -1476 4670 3616 2153 136 0 13 chr1 26721490 26721798 -215942555 - AluJb SINE Alu -8 304 1 4870 244 92 32 chr1 26721798 26722527 -215941826 - L1M4 LINE L1 -2530 3616 2522 1047 99 0 0 chr1 26722528 26722659 -215941694 + AluSg SINE Alu 1 131 -179 265 250 13 26 chr1 26723208 26723284 -215941069 + MIR3 SINE MIR 117 191 -17 347 269 185 0 chr1 26723819 26723949 -215940404 - MIR SINE MIR -60 202 49 375 286 0 20 chr1 26724028 26724166 -215940187 + MIR3 SINE MIR 53 186 -22 197 292 0 31 chr1 26724894 26724959 -215939394 - MIR SINE MIR -60 148 86 2049 153 3 19 chr1 26725094 26725407 -215938946 - AluJo SINE Alu -4 308 1 2411 94 0 0 chr1 26725668 26725966 -215938387 + AluSx SINE Alu 1 298 -14 563 327 82 4 chr1 26725967 26726224 -215938129 - L2 LINE L2 -17 3296 3020 278 256 96 48 chr1 26726603 26726728 -215937625 - MIR3 SINE MIR -63 145 15 2458 98 0 0 chr1 26728686 26728993 -215935360 + AluSx SINE Alu 1 307 -5 286 278 52 21 chr1 26729000 26729097 -215935256 - MIR SINE MIR -106 156 57 223 320 115 0 chr1 26730563 26730685 -215933668 - L2 LINE L2 -213 3059 2924 206 143 0 0 chr1 26731200 26731235 -215933118 + MIR SINE MIR 90 124 -84 582 269 9 67 chr1 26731252 26731475 -215932878 - MIR SINE MIR -12 250 41 630 150 16 94 chr1 26732408 26732535 -215931818 - FLAM_A SINE Alu -16 117 1 1696 186 19 19 chr1 26732539 26732851 -215931502 - AluJo SINE Alu 0 312 1 823 254 160 15 chr1 26732894 26733225 -215931128 + L2 LINE L2 2349 2727 -587 313 264 18 45 chr1 26733225 26733335 -215931018 + L2 LINE L2 2906 3012 -301 1912 101 4 40 chr1 26733438 26733716 -215930637 + AluSc SINE Alu 38 305 -4 1059 193 5 5 chr1 26733747 26733949 -215930404 + MLT1A1 LTR MaLR 164 365 0 256 216 0 0 chr1 26733962 26734013 -215930340 + L2 LINE L2 3224 3274 -39 416 100 44 33 chr1 26734336 26734426 -215929927 - L1MA8 LINE L1 0 6291 6201 511 291 36 76 chr1 26734426 26734701 -215929652 + L2 LINE L2 3008 3271 -1 363 280 118 46 chr1 26734887 26735216 -215929137 + MLT1K LTR MaLR 228 580 -8 601 212 20 26 chr1 26735573 26735724 -215928629 - MIR3 SINE MIR 0 208 59 2394 116 0 0 chr1 26735778 26736088 -215928265 + AluSx SINE Alu 1 310 -2 498 104 42 31 chr1 26736365 26736461 -215927892 + L1MC1 LINE L1 6236 6332 -1 2025 102 0 75 chr1 26736476 26736781 -215927572 + AluSx SINE Alu 3 284 -28 366 23 0 0 chr1 26736781 26736824 -215927529 + (CA)n Simple_repeat Simple_repeat 2 44 0 644 261 28 17 chr1 26736845 26737025 -215927328 + MIR SINE MIR 81 262 0 344 266 104 19 chr1 26737201 26737355 -215926998 + MIR SINE MIR 28 194 -68 347 291 89 16 chr1 26737508 26737720 -215926633 - L1MC4 LINE L1 0 8042 7847 2429 104 3 0 chr1 26737720 26738028 -215926325 + AluSp SINE Alu 1 309 -4 347 291 89 16 chr1 26738028 26738084 -215926269 - L1MC4 LINE L1 -195 7847 7642 221 305 51 45 chr1 26738881 26739058 -215925295 + MER5B DNA MER1_type 1 178 0 1847 100 8 0 chr1 26739927 26740168 -215924185 - AluSq SINE Alu -60 253 11 1144 114 124 10 chr1 26740781 26740974 -215923379 - AluJb SINE Alu -20 292 78 1548 137 0 0 chr1 26740975 26741186 -215923167 - AluSq SINE Alu -102 211 1 2156 118 3 10 chr1 26741188 26741485 -215922868 - AluSx SINE Alu -17 295 1 267 238 323 37 chr1 26741611 26741800 -215922553 - L3 LINE CR1 -123 1454 1212 2155 104 31 3 chr1 26745772 26746061 -215918292 - AluSg SINE Alu -13 297 1 1849 137 0 18 chr1 26746263 26746541 -215917812 + AluJb SINE Alu 32 304 -8 2189 128 7 0 chr1 26746742 26747038 -215917315 + AluSx SINE Alu 1 298 -14 2335 110 3 0 chr1 26747059 26747367 -215916986 + AluSq SINE Alu 1 309 -4 2406 77 3 3 chr1 26748134 26748431 -215915922 - AluSq SINE Alu -16 297 1 2309 96 3 0 chr1 26748431 26748724 -215915629 - AluSp SINE Alu -19 294 1 1029 170 112 4 chr1 26748839 26749080 -215915273 + Charlie4 DNA MER1_type 30 296 -1665 2350 57 64 0 chr1 26749220 26749500 -215914853 - AluY SINE Alu -13 298 1 550 167 8 68 chr1 26749682 26749814 -215914539 - FLAM_A SINE Alu -6 127 4 2447 90 0 10 chr1 26749824 26750135 -215914218 - AluSc SINE Alu -1 308 1 363 175 156 71 chr1 26750135 26750188 -215914165 + Charlie4 DNA MER1_type 1793 1840 -121 2288 97 10 13 chr1 26750188 26750499 -215913854 - AluSx SINE Alu -2 310 1 363 175 156 71 chr1 26750499 26750599 -215913754 + Charlie4 DNA MER1_type 1840 1959 -2 430 226 83 44 chr1 26750600 26750781 -215913572 - MIR SINE MIR -54 208 21 2166 112 34 0 chr1 26751255 26751550 -215912803 + AluSx SINE Alu 1 305 -7 293 221 44 0 chr1 26751570 26751638 -215912715 - L2 LINE L2 -2 3311 3241 221 282 55 82 chr1 26752169 26752279 -215912074 + MIR SINE MIR 16 122 -140 670 232 43 0 chr1 26752549 26752713 -215911640 + MIR SINE MIR 92 262 0 284 335 128 28 chr1 26752710 26753134 -215911219 - L2 LINE L2 -19 3253 2775 * 486 285 35 6 chr1 26753153 26753327 -215911026 - MIR SINE MIR -15 247 70 919 144 43 53 chr1 26753357 26753415 -215910938 - MER5A DNA MER1_type 0 189 132 1816 153 87 0 chr1 26753415 26753702 -215910651 + AluJb SINE Alu 1 312 0 919 144 43 53 chr1 26753702 26753830 -215910523 - MER5A DNA MER1_type -57 132 5 182 292 77 0 chr1 26753857 26753922 -215910431 + MIR SINE MIR 119 188 -74 2417 98 0 3 chr1 26754559 26754866 -215909487 + AluSx SINE Alu 1 306 -6 238 243 84 56 chr1 26754975 26755082 -215909271 + L2 LINE L2 2954 3063 -209 27 29 0 0 chr1 26755087 26755121 -215909232 + AT_rich Low_complexity Low_complexity 1 34 0 315 243 0 14 chr1 26755176 26755250 -215909103 + L2 LINE L2 3223 3295 -18 226 214 92 92 chr1 26756508 26756639 -215907714 - MIR3 SINE MIR -16 192 62 2427 82 0 0 chr1 26757067 26757361 -215906992 - AluY SINE Alu -17 294 1 681 183 0 0 chr1 26757385 26757500 -215906853 - FLAM_C SINE Alu -18 115 1 240 380 63 7 chr1 26757577 26757719 -215906634 - L2 LINE L2 0 3313 3164 2010 139 26 19 chr1 26757958 26758138 -215906215 - AluJb SINE Alu 0 312 128 2342 105 0 3 chr1 26758138 26758443 -215905910 - AluSg SINE Alu -6 304 1 2010 139 26 19 chr1 26758443 26758572 -215905781 - AluJb SINE Alu -184 128 1 2393 108 0 0 chr1 26759284 26759589 -215904764 - AluSg SINE Alu -4 306 2 548 177 0 0 chr1 26759633 26759729 -215904624 - AluJ/FLAM SINE Alu -215 97 2 339 257 28 18 chr1 26759732 26759841 -215904512 + MIR SINE MIR 101 210 -52 601 220 28 92 chr1 26760045 26760107 -215904246 - MIR SINE MIR -6 256 192 1021 166 0 0 chr1 26760107 26760270 -215904083 - FRAM SINE Alu -2 164 2 601 220 28 92 chr1 26760270 26760457 -215903896 - MIR SINE MIR -70 192 23 316 141 99 28 chr1 26760453 26760524 -215903829 + MIR SINE MIR 79 154 -108 * 223 303 0 15 chr1 26761125 26761191 -215903162 + MIR SINE MIR 30 94 -168 316 273 75 128 chr1 26761560 26761842 -215902511 - L1ME4a LINE L1 -121 6000 5734 1613 245 90 60 chr1 26761879 26761922 -215902431 - L1ME3A LINE L1 -2 6160 6120 1835 109 74 4 chr1 26761922 26762179 -215902174 + AluSq SINE Alu 24 298 -15 1613 245 90 60 chr1 26762179 26762985 -215901368 - L1ME3A LINE L1 -42 6120 5315 804 182 73 6 chr1 26763509 26763674 -215900679 - MLT1A2 LTR MaLR -28 362 187 237 258 0 0 chr1 26763678 26763696 -215900657 + GA-rich Low_complexity Low_complexity 2 19 -48 3145 175 22 65 chr1 26763696 26764417 -215899936 - LTR8 LTR ERV1 -1 690 1 237 258 0 0 chr1 26764417 26764464 -215899889 + GA-rich Low_complexity Low_complexity 18 67 0 1860 149 6 38 chr1 26764469 26764784 -215899569 - AluJo SINE Alu -3 309 5 941 145 31 6 chr1 26764816 26764975 -215899378 - MLT1A2 LTR MaLR -211 163 1 627 193 93 21 chr1 26764985 26765125 -215899228 + MIR SINE MIR 70 219 -43 2708 156 36 45 chr1 26765133 26765492 -215898861 + MLT1F LTR MaLR 11 372 -170 315 0 0 0 chr1 26765492 26765527 -215898826 + (TA)n Simple_repeat Simple_repeat 1 35 0 1998 147 19 3 chr1 26765531 26765838 -215898515 - AluJo SINE Alu 0 312 1 2708 156 36 45 chr1 26765838 26766000 -215898353 + MLT1F LTR MaLR 375 532 -10 347 338 19 13 chr1 26766202 26766356 -215897997 - MIR3 SINE MIR -8 200 46 295 350 61 12 chr1 26767184 26767347 -215897006 - MIR3 SINE MIR -28 180 10 2103 111 17 10 chr1 26767421 26767719 -215896634 + AluSx SINE Alu 1 300 -12 289 232 112 107 chr1 26767719 26767840 -215896513 + MIR SINE MIR 24 148 -114 1234 72 17 0 chr1 26767840 26768020 -215896333 + L1MA8 LINE L1 6106 6288 -3 289 232 112 107 chr1 26768020 26768122 -215896231 + MIR SINE MIR 148 248 -14 222 244 151 12 chr1 26768279 26768365 -215895988 + MIR SINE MIR 57 154 -108 286 136 0 0 chr1 26768466 26768510 -215895843 + Alu SINE Alu 252 295 -7 322 280 61 0 chr1 26768514 26768646 -215895707 + L1MC5 LINE L1 7649 7788 -173 849 142 8 0 chr1 26768655 26768789 -215895564 + AluSg/x SINE Alu 175 309 0 2237 118 0 10 chr1 26768797 26769093 -215895260 + AluSx SINE Alu 1 293 -19 2489 93 0 0 chr1 26769112 26769424 -215894929 + AluSq SINE Alu 1 312 -1 273 161 35 58 chr1 26769459 26769546 -215894807 + L1MC5 LINE L1 7845 7929 -32 623 286 35 15 chr1 26769694 26769897 -215894456 + MIR SINE MIR 43 249 -13 555 254 17 35 chr1 26769910 26770083 -215894270 + MIR SINE MIR 22 191 -71 246 293 51 70 chr1 26770180 26770337 -215894016 + L2 LINE L2 1129 1282 -2032 180 97 0 0 chr1 26770617 26770648 -215893705 + (A)n Simple_repeat Simple_repeat 1 31 0 2419 78 3 0 chr1 26770650 26770943 -215893410 + AluSc SINE Alu 2 295 -14 2045 145 3 14 chr1 26771040 26771337 -215893016 - AluJb SINE Alu -18 294 1 399 297 133 0 chr1 26771337 26771465 -215892888 - L2 LINE L2 -12 3260 3116 533 297 46 42 chr1 26771507 26771790 -215892563 - L2 LINE L2 -814 2500 2217 1023 285 155 12 chr1 26771815 26772306 -215892047 - MLT1L LTR MaLR -12 603 43 707 314 18 4 chr1 26772367 26772593 -215891760 + MIR SINE MIR 20 248 -14 2229 125 0 7 chr1 26772924 26773228 -215891125 + AluSx SINE Alu 1 302 -10 2240 131 0 0 chr1 26773391 26773696 -215890657 - AluSc SINE Alu 0 309 5 202 258 106 83 chr1 26773711 26773843 -215890510 + L2 LINE L2 3137 3271 -1 2305 107 0 7 chr1 26773860 26774181 -215890172 - AluSq SINE Alu 0 313 1 249 281 53 18 chr1 26774181 26774295 -215890058 + MIR3 SINE MIR 70 187 -21 470 132 0 0 chr1 26774512 26774588 -215889765 + AluSg/x SINE Alu 172 247 -63 224 246 97 90 chr1 26774595 26774729 -215889624 + L2 LINE L2 3137 3271 -1 366 293 87 5 chr1 26775917 26776098 -215888255 - MIR SINE MIR -39 223 30 650 226 18 24 chr1 26776870 26777034 -215887319 - MIR SINE MIR -71 191 29 1548 174 73 0 chr1 26777122 26777397 -215886956 + AluJb SINE Alu 1 295 -17 2263 97 0 0 chr1 26777405 26777688 -215886665 + AluSx SINE Alu 1 284 -24 222 0 79 0 chr1 26777688 26777726 -215886627 + (CA)n Simple_repeat Simple_repeat 2 42 0 692 251 51 15 chr1 26778057 26778252 -215886101 - MIR SINE MIR -2 260 59 2250 133 0 0 chr1 26778271 26778580 -215885773 - AluSx SINE Alu -3 309 1 1054 96 0 0 chr1 26778580 26778715 -215885638 - AluSq/x SINE Alu -177 135 1 737 194 38 6 chr1 26779481 26779672 -215884681 + AluJo SINE Alu 119 314 0 1861 134 72 3 chr1 26779672 26779962 -215884391 + AluSx SINE Alu 1 310 -2 238 295 0 0 chr1 26780237 26780298 -215884055 - MIR SINE MIR -143 119 59 2446 95 0 6 chr1 26780428 26780743 -215883610 - AluSp SINE Alu 0 313 1 388 287 35 14 chr1 26780749 26780892 -215883461 - L2 LINE L2 0 3313 3168 426 238 30 0 chr1 26780956 26781057 -215883296 + MIR SINE MIR 38 141 -67 431 77 15 0 chr1 26781257 26781322 -215883031 - FRAM SINE Alu -85 91 26 215 252 128 2 chr1 26782099 26782200 -215882153 + MIR SINE MIR 55 147 -61 327 318 9 0 chr1 26782615 26782725 -215881628 - L2 LINE L2 0 3313 3203 433 243 164 13 chr1 26782806 26782958 -215881395 - MER5A DNA MER1_type -6 183 9 2292 97 7 3 chr1 26783407 26783705 -215880648 + AluSg SINE Alu 1 299 -11 408 303 12 31 chr1 26784392 26784554 -215879799 + MIR SINE MIR 51 209 -53 315 191 117 11 chr1 26784584 26784678 -215879675 - L2 LINE L2 -10 3303 3200 217 333 0 12 chr1 26784719 26784800 -215879553 - L2 LINE L2 -5 3267 3188 2386 102 0 13 chr1 26785825 26786130 -215878223 + AluSx SINE Alu 1 301 -11 205 255 0 0 chr1 26786155 26786202 -215878151 + L2 LINE L2 3248 3294 -19 389 303 29 77 chr1 26786244 26786452 -215877901 + MIR SINE MIR 20 217 -45 2325 108 3 3 chr1 26787077 26787384 -215876969 + AluSp SINE Alu 1 307 -6 231 245 0 0 chr1 26787446 26787495 -215876858 + MIR SINE MIR 103 151 -111 627 261 78 17 chr1 26787497 26787677 -215876676 - MIR SINE MIR -3 259 69 286 308 0 0 chr1 26787718 26787796 -215876557 + MIR SINE MIR 175 252 -10 2370 99 0 3 chr1 26787901 26788203 -215876150 - AluSq SINE Alu -12 301 1 260 242 45 15 chr1 26789029 26789095 -215875258 - L2 LINE L2 -1 3271 3204 207 0 0 0 chr1 26789333 26789356 -215874997 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1807 107 111 7 chr1 26789366 26789636 -215874717 + AluSg SINE Alu 1 298 -12 1815 155 10 17 chr1 26789644 26789941 -215874412 + AluJo SINE Alu 1 295 -17 559 254 18 100 chr1 26789950 26790126 -215874227 + MER102b DNA MER1_type 78 224 -1204 2479 71 3 7 chr1 26790126 26790434 -215873919 + AluSq SINE Alu 6 312 -1 559 254 18 100 chr1 26790434 26790536 -215873817 + MER102b DNA MER1_type 224 333 -8 349 283 100 0 chr1 26790588 26790708 -215873645 + MIR SINE MIR 106 237 -25 3036 110 88 52 chr1 26791867 26791917 -215872436 - MER39B LTR ERV1 -28 625 578 2391 99 3 0 chr1 26791917 26792221 -215872132 + AluSq SINE Alu 1 305 -8 3036 110 88 52 chr1 26792221 26792769 -215871584 - MER39B LTR ERV1 -75 578 5 288 250 64 43 chr1 26793813 26793953 -215870400 - L1ME3A LINE L1 -24 6146 6004 2372 99 0 3 chr1 26794561 26794863 -215869490 - AluSq SINE Alu -12 301 1 490 219 95 18 chr1 26794869 26795038 -215869315 - L1MC5 LINE L1 -54 7907 7726 1446 121 36 31 chr1 26795069 26795293 -215869060 + AluSg/x SINE Alu 77 301 -9 309 194 32 0 chr1 26795324 26795386 -215868967 + MER5A DNA MER1_type 39 102 -87 242 326 10 10 chr1 26795387 26795485 -215868868 + MER5A DNA MER1_type 66 163 -26 * 362 229 10 10 chr1 26795399 26795495 -215868858 - MER5A DNA MER1_type -66 123 28 2453 103 0 0 chr1 26796501 26796813 -215867540 + AluSx SINE Alu 1 312 0 2393 103 0 3 chr1 26796817 26797127 -215867226 + AluSq SINE Alu 1 309 -4 22 0 0 0 chr1 26797153 26797175 -215867178 + AT_rich Low_complexity Low_complexity 1 22 0 1834 172 7 16 chr1 26797297 26797605 -215866748 - AluJb SINE Alu -7 305 1 2227 109 0 17 chr1 26797615 26797917 -215866436 - AluSx SINE Alu -15 297 1 2483 63 7 3 chr1 26798010 26798313 -215866040 - AluY SINE Alu -7 304 1 483 274 87 28 chr1 26798486 26798718 -215865635 + MIR SINE MIR 15 260 -2 189 74 0 0 chr1 26799474 26799501 -215864852 + (CGG)n Simple_repeat Simple_repeat 3 29 0 329 248 50 10 chr1 26800113 26800214 -215864139 - MIR SINE MIR -35 227 123 692 228 47 29 chr1 26800641 26800812 -215863541 - MER69A DNA AcHobo -1 176 3 994 233 97 109 chr1 26800946 26801264 -215863089 + L1MC4a LINE L1 5519 5839 -1969 2309 87 0 0 chr1 26801264 26801562 -215862791 + AluSx SINE Alu 1 298 -14 994 233 97 109 chr1 26801562 26801956 -215862397 + L1MC4a LINE L1 5839 6222 -1586 1120 189 39 39 chr1 26802020 26802056 -215862297 - AluJo SINE Alu -9 303 268 2277 82 0 10 chr1 26802056 26802362 -215861991 + AluY SINE Alu 1 303 -8 1120 189 39 39 chr1 26802362 26802503 -215861850 - AluJo SINE Alu -44 268 123 2378 64 3 0 chr1 26802503 26802799 -215861554 + AluY SINE Alu 1 297 -14 1120 189 39 39 chr1 26802799 26802906 -215861447 - AluJo SINE Alu -188 124 18 552 261 82 19 chr1 26802938 26803184 -215861169 + L1MC4 LINE L1 6333 6562 -1329 2189 110 0 0 chr1 26803184 26803485 -215860868 + AluSx SINE Alu 1 301 -11 552 261 82 19 chr1 26803485 26803602 -215860751 + L1MC4 LINE L1 6562 6814 -1077 189 0 0 0 chr1 26803935 26803956 -215860397 + (A)n Simple_repeat Simple_repeat 1 21 0 2066 124 0 34 chr1 26803956 26804279 -215860074 + AluSx SINE Alu 1 312 0 252 252 194 68 chr1 26804284 26804562 -215859791 + L1MC5 LINE L1 7299 7625 -336 1842 125 13 32 chr1 26804562 26804875 -215859478 + AluSx SINE Alu 6 312 0 252 252 194 68 chr1 26804875 26804921 -215859432 + L1MC5 LINE L1 7625 7664 -297 517 259 196 2 chr1 26806066 26806275 -215858078 - MIR SINE MIR 0 262 13 425 252 87 0 chr1 26807130 26807245 -215857108 + MIR3 SINE MIR 76 200 -8 218 300 101 10 chr1 26807257 26807362 -215856991 - MIR3 SINE MIR -53 155 70 458 279 109 20 chr1 26809241 26809388 -215854965 - MER117 DNA MER1_type -31 166 7 267 217 0 0 chr1 26809399 26809459 -215854894 - MIR SINE MIR -68 140 81 764 113 0 0 chr1 26809761 26809867 -215854486 + AluJb SINE Alu 200 305 -7 182 315 123 14 chr1 26809869 26809942 -215854411 + MIR SINE MIR 30 110 -152 273 324 49 10 chr1 26810189 26810291 -215854062 - MIR3 SINE MIR -9 199 94 458 255 72 20 chr1 26811206 26811359 -215852994 + MIR3 SINE MIR 30 190 -18 429 288 65 6 chr1 26811834 26812004 -215852349 - MIR3 SINE MIR -22 186 7 267 260 51 102 chr1 26812255 26812337 -215852016 + L2 LINE L2 2925 2995 -277 1693 155 35 0 chr1 26812337 26812621 -215851732 - AluJb SINE Alu -18 294 1 267 260 51 102 chr1 26812621 26812715 -215851638 + L2 LINE L2 2995 3092 -180 728 182 101 76 chr1 26812735 26812933 -215851420 - MIR SINE MIR 0 262 60 354 303 66 0 chr1 26812988 26813110 -215851243 + L2 LINE L2 3136 3265 -7 347 306 69 74 chr1 26813111 26813327 -215851026 + L3 LINE CR1 1297 1511 -66 873 171 116 68 chr1 26813468 26813602 -215850751 + ORSL DNA AcHobo 2 128 -147 2239 108 0 0 chr1 26813602 26813897 -215850456 + AluSx SINE Alu 2 296 -16 873 171 116 68 chr1 26813897 26813922 -215850431 + ORSL DNA AcHobo 128 150 -125 1655 165 64 14 chr1 26813922 26814219 -215850134 - AluJb SINE Alu 0 312 1 873 171 116 68 chr1 26814219 26814309 -215850044 + ORSL DNA AcHobo 150 264 -11 288 283 36 48 chr1 26814330 26814560 -215849793 + L1MC4a LINE L1 2286 6173 -1 218 284 74 0 chr1 26814617 26814698 -215849655 + MIR SINE MIR 14 100 -162 480 247 82 19 chr1 26814725 26814883 -215849470 + MIR SINE MIR 84 251 -11 223 294 44 0 chr1 26816090 26816158 -215848195 - L3b LINE CR1 -188 1395 1325 213 339 191 11 chr1 26816282 26816471 -215847882 + MIR SINE MIR 29 251 -11 279 300 77 23 chr1 26816508 26816638 -215847715 - L3b LINE CR1 -104 1479 1343 302 322 81 23 chr1 26817628 26817802 -215846551 - MIR3 SINE MIR -22 186 3 451 88 0 0 chr1 26868168 26868225 -215796128 - Alu SINE Alu -260 58 2 554 335 30 6 chr1 26869228 26869395 -215794958 + MIR SINE MIR 48 218 -44 242 282 51 92 chr1 26869498 26869693 -215794660 - L2 LINE L2 -314 2958 2774 495 0 0 0 chr1 26869740 26869795 -215794558 + (TA)n Simple_repeat Simple_repeat 2 56 0 322 244 33 22 chr1 26869840 26869930 -215794423 + MIR SINE MIR 16 106 -102 587 285 43 5 chr1 26869931 26870138 -215794215 - LTR16C LTR ERVL -1 490 276 698 108 0 0 chr1 26870153 26870246 -215794107 + FRAM SINE Alu 54 146 -30 189 147 0 0 chr1 26870254 26870288 -215794065 + (GGGAA)n Simple_repeat Simple_repeat 4 37 0 298 250 14 0 chr1 26870307 26870379 -215793974 - L2 LINE L2 -229 3084 3012 364 241 117 22 chr1 26870383 26870520 -215793833 - MIR SINE MIR -4 258 109 550 96 14 0 chr1 26870623 26870696 -215793657 - AluS SINE Alu -238 75 2 431 205 162 0 chr1 26871057 26871174 -215793179 + MER69 DNA AcHobo 1 136 -2390 1639 122 125 21 chr1 26871177 26871456 -215792897 - AluSg SINE Alu -2 308 1 417 134 30 0 chr1 26871460 26871527 -215792826 + MER69 DNA AcHobo 2456 2524 -2 809 229 39 0 chr1 26871568 26871747 -215792606 - MIR SINE MIR -60 202 17 2191 124 27 0 chr1 26871853 26872152 -215792201 - AluSc SINE Alu -2 307 1 2592 184 24 20 chr1 26872244 26872787 -215791566 + MER90 LTR ERV1 70 614 0 256 286 68 68 chr1 26872847 26873067 -215791286 + L1ME3 LINE L1 5943 6162 0 1788 135 54 0 chr1 26873085 26873345 -215791008 + AluSx SINE Alu 7 280 -32 318 310 34 116 chr1 26874532 26874800 -215789553 + L2 LINE L2 2958 3203 -69 494 216 61 13 chr1 26875905 26876081 -215788272 + MIR SINE MIR 28 207 -55 432 248 35 120 chr1 26876779 26876833 -215787520 - MIR SINE MIR -51 211 154 2082 60 0 15 chr1 26876833 26877098 -215787255 - AluY SINE Alu -17 294 34 432 248 35 120 chr1 26877098 26877115 -215787238 - MIR SINE MIR -108 154 137 1663 193 0 30 chr1 26877115 26877415 -215786938 - AluJb SINE Alu -21 291 1 432 248 35 120 chr1 26877415 26877540 -215786813 - MIR SINE MIR -125 137 34 194 277 31 15 chr1 26877760 26877825 -215786528 - L2 LINE L2 -4 3309 3244 341 213 265 7 chr1 26877987 26878123 -215786230 - MER5A DNA MER1_type 0 189 19 609 276 71 10 chr1 26878879 26879062 -215785291 - MIR SINE MIR -6 256 64 1853 127 42 7 chr1 26879062 26879346 -215785007 + AluJb SINE Alu 6 299 -13 254 320 124 10 chr1 26879987 26880084 -215784269 + MIR SINE MIR 33 140 -68 200 316 0 0 chr1 26880122 26880179 -215784174 + MIR3 SINE MIR 143 199 -9 582 314 80 50 chr1 26880279 26880741 -215783612 - MLT1K LTR MaLR 0 476 1 698 247 97 16 chr1 26880780 26880966 -215783387 + MIR SINE MIR 37 237 -25 827 160 0 0 chr1 26881258 26881383 -215782970 + FLAM_C SINE Alu 1 125 -18 392 241 196 0 chr1 26881459 26881571 -215782782 + MIR SINE MIR 12 145 -117 2028 133 13 0 chr1 26881573 26881874 -215782479 - AluSx SINE Alu -7 305 1 33 0 0 0 chr1 26881874 26881907 -215782446 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr1 26882126 26882147 -215782206 + (A)n Simple_repeat Simple_repeat 1 21 0 215 31 31 0 chr1 26882237 26882269 -215782084 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2146 128 0 0 chr1 26882273 26882562 -215781791 - AluSx SINE Alu -23 289 1 1938 125 0 72 chr1 26882629 26882949 -215781404 - AluJo SINE Alu -15 297 1 805 184 0 7 chr1 26882949 26883085 -215781268 - AluJo SINE Alu -177 135 1 547 254 41 75 chr1 26883127 26883272 -215781081 + MIR SINE MIR 1 134 -128 2166 121 20 0 chr1 26883272 26883569 -215780784 + AluSx SINE Alu 1 303 -9 547 254 41 75 chr1 26883569 26883691 -215780662 + MIR SINE MIR 134 259 -3 2382 97 0 0 chr1 26883834 26884144 -215780209 - AluSx SINE Alu -2 310 1 427 281 34 27 chr1 26884146 26884292 -215780061 - MIR3 SINE MIR -61 147 1 322 238 163 81 chr1 26884629 26884666 -215779687 - MIR3 SINE MIR -11 197 164 2229 119 10 7 chr1 26884666 26884976 -215779377 + AluSx SINE Alu 1 311 -1 322 238 163 81 chr1 26884976 26885098 -215779255 - MIR3 SINE MIR -44 164 25 366 230 26 80 chr1 26885271 26885384 -215778969 + MIR SINE MIR 2 108 -154 * 469 317 14 0 chr1 26885381 26885526 -215778827 - MIR SINE MIR 0 262 116 2464 90 0 0 chr1 26885550 26885849 -215778504 - AluSg SINE Alu -11 299 1 1848 148 14 3 chr1 26885993 26886277 -215778076 - AluJb SINE Alu -25 287 1 475 167 0 0 chr1 26886279 26886357 -215777996 - AluJo SINE Alu -5 307 230 2589 128 54 76 chr1 26886357 26886858 -215777495 - LTR2B LTR ERV1 0 490 1 688 141 0 25 chr1 26886858 26886979 -215777374 - Harlequin LTR ERV1 0 6896 6779 * 2999 92 7 26 chr1 26886973 26887429 -215776924 - Harlequin LTR ERV1 -1186 5710 5264 605 191 0 0 chr1 26887431 26887525 -215776828 - AluJo SINE Alu -84 228 135 * 622 157 0 0 chr1 26887521 26887623 -215776730 - AluJo SINE Alu -209 103 2 442 229 14 36 chr1 26887930 26888070 -215776283 - HAL1 LINE L1 -898 1609 1473 2241 120 0 0 chr1 26888101 26888401 -215775952 - AluSx SINE Alu -12 300 1 1969 130 33 7 chr1 26888493 26888794 -215775559 + AluSc SINE Alu 1 309 0 687 128 6 2 chr1 26888840 26889007 -215775346 + MSTC LTR MaLR 231 428 0 1735 184 27 32 chr1 26890437 26890806 -215773547 - MLT1A2 LTR MaLR 0 374 8 656 250 50 144 chr1 26890807 26890983 -215773370 - L1ME4a LINE L1 -21 6100 5909 2158 101 21 0 chr1 26890983 26891270 -215773083 + AluSq SINE Alu 1 293 -20 656 250 50 144 chr1 26891270 26891529 -215772824 - L1ME4a LINE L1 -212 5909 5706 1037 142 103 71 chr1 26891536 26891616 -215772737 + L1MD2 LINE L1 6057 6133 -226 264 30 0 0 chr1 26891616 26891649 -215772704 + (CA)n Simple_repeat Simple_repeat 2 34 0 1037 142 103 71 chr1 26891649 26891788 -215772565 + L1MD2 LINE L1 6133 6289 -70 2350 108 0 10 chr1 26891788 26891966 -215772387 - AluSp SINE Alu -2 311 136 2541 64 0 3 chr1 26891966 26892264 -215772089 - AluY SINE Alu -14 297 1 2350 108 0 10 chr1 26892264 26892399 -215771954 - AluSp SINE Alu -177 136 1 1037 142 103 71 chr1 26892399 26892460 -215771893 + L1MD2 LINE L1 6289 6347 -12 1829 171 0 36 chr1 26892461 26892765 -215771588 + AluJo SINE Alu 1 293 -19 2366 100 0 0 chr1 26892767 26893066 -215771287 + AluSx SINE Alu 1 299 -13 2191 106 3 13 chr1 26893779 26894081 -215770272 - AluSx SINE Alu -13 299 1 200 280 120 0 chr1 26894222 26894297 -215770056 - MIR SINE MIR -2 260 177 1925 152 17 0 chr1 26894367 26894669 -215769684 + AluJb SINE Alu 1 307 -5 429 243 160 42 chr1 26895145 26895289 -215769064 - L2 LINE L2 0 3313 3153 883 147 0 0 chr1 26895818 26895947 -215768406 - FLAM_C SINE Alu -14 129 1 352 241 13 13 chr1 26896798 26896877 -215767476 + MIR SINE MIR 36 114 -148 198 273 18 18 chr1 26896909 26896964 -215767389 + MIR SINE MIR 196 250 -12 2128 80 40 0 chr1 26897233 26897532 -215766821 - AluSq SINE Alu -2 311 1 1524 170 33 26 chr1 26898157 26898463 -215765890 - AluJo SINE Alu 0 312 5 443 110 0 14 chr1 26898540 26898613 -215765740 - Alu SINE Alu -238 73 2 1862 117 37 0 chr1 26898767 26899099 -215765254 - AluSx SINE Alu 0 345 4 414 200 0 0 chr1 26899140 26899205 -215765148 + L2 LINE L2 3249 3313 0 2268 91 0 3 chr1 26899233 26899529 -215764824 + AluSp SINE Alu 1 295 -18 488 324 85 27 chr1 26899804 26900097 -215764256 + L2 LINE L2 3000 3309 -4 255 204 0 0 chr1 26900122 26900171 -215764182 - L2 LINE L2 -2 3270 3222 329 259 224 0 chr1 26900339 26900455 -215763898 - L2 LINE L2 -6 3307 3166 337 218 103 73 chr1 26900763 26900907 -215763446 - MIR SINE MIR -65 197 46 2278 76 0 32 chr1 26900907 26901221 -215763132 + AluSg SINE Alu 1 304 -6 337 218 103 73 chr1 26901221 26901241 -215763112 - MIR SINE MIR -216 46 28 510 241 14 28 chr1 26901304 26901445 -215762908 - MLT1J LTR MaLR 0 511 373 510 328 113 9 chr1 26901613 26901842 -215762511 - MIR SINE MIR -6 256 4 388 224 24 0 chr1 26902261 26902346 -215762007 - MLT1K LTR MaLR -2 586 500 1048 172 0 0 chr1 26902486 26902655 -215761698 - AluJb SINE Alu -10 302 134 1790 154 23 3 chr1 26902655 26902954 -215761399 - AluJo SINE Alu -7 305 1 670 230 116 81 chr1 26903748 26904018 -215760335 - MLT1K LTR MaLR -1 475 181 2183 95 7 0 chr1 26904018 26904322 -215760031 - AluSq SINE Alu -6 307 2 670 230 116 81 chr1 26904322 26904508 -215759845 - MLT1K LTR MaLR -295 181 3 234 302 66 11 chr1 26904769 26904951 -215759402 - L1ME4a LINE L1 -113 6008 5817 492 127 14 0 chr1 26904959 26905030 -215759323 - FLAM_A SINE Alu -19 123 52 1511 150 114 4 chr1 26905049 26905322 -215759031 - AluJb SINE Alu -5 307 5 325 261 54 54 chr1 26905340 26905451 -215758902 + L1MC4 LINE L1 6559 6669 -1373 2058 90 50 0 chr1 26905459 26905736 -215758617 + AluSc SINE Alu 1 291 -18 398 320 80 7 chr1 26905784 26905934 -215758419 - MIR SINE MIR -79 183 23 1748 136 7 37 chr1 26906153 26906276 -215758077 + AluSx SINE Alu 14 139 -173 2241 90 0 7 chr1 26906276 26906576 -215757777 + AluSq SINE Alu 1 298 -15 1748 136 7 37 chr1 26906576 26906747 -215757606 + AluSx SINE Alu 139 299 -13 1151 237 59 28 chr1 26906817 26907172 -215757181 + L1MC/D LINE L1 5418 5783 -2025 1043 289 110 12 chr1 26907177 26907585 -215756768 - MLT1J2 LTR MaLR 0 450 3 1916 138 7 13 chr1 26908393 26908698 -215755655 - AluJo SINE Alu -9 303 1 2379 11 81 0 chr1 26908768 26909052 -215755301 + AluY SINE Alu 1 307 -4 1330 278 147 29 chr1 26909428 26909622 -215754731 - L2 LINE L2 -1 3312 3142 1617 171 23 26 chr1 26909622 26909927 -215754426 + AluJo SINE Alu 1 304 -8 1330 278 147 29 chr1 26909927 26910467 -215753886 - L2 LINE L2 -171 3142 2453 1770 145 26 16 chr1 26910467 26910771 -215753582 - AluJo SINE Alu -5 307 1 1330 278 147 29 chr1 26910771 26910874 -215753479 - L2 LINE L2 -860 2453 2364 367 221 336 0 chr1 26911002 26911115 -215753238 + L2 LINE L2 3122 3272 0 473 308 173 28 chr1 26913085 26913299 -215751054 + MIR SINE MIR 2 246 -16 188 286 0 0 chr1 26913266 26913308 -215751045 + L2 LINE L2 3259 3300 -13 * 1704 172 0 7 chr1 26913672 26913988 -215750365 + AluJo SINE Alu 3 312 0 305 210 86 0 chr1 26914009 26914090 -215750263 + MIR SINE MIR 58 145 -117 487 338 45 64 chr1 26914915 26915178 -215749175 - L3 LINE CR1 -213 1364 1097 1697 157 7 13 chr1 26915178 26915478 -215748875 + AluJb SINE Alu 1 298 -14 487 338 45 64 chr1 26915478 26915567 -215748786 - L3 LINE CR1 -480 1097 1008 2011 96 0 38 chr1 26915567 26915883 -215748470 - AluSx SINE Alu 0 305 1 487 338 45 64 chr1 26915883 26915998 -215748355 - L3 LINE CR1 -569 1008 904 709 318 50 12 chr1 26916393 26916635 -215747718 - MIR SINE MIR -10 252 2 347 316 98 50 chr1 26916802 26917160 -215747193 - L2 LINE L2 -344 2970 2596 968 185 0 0 chr1 26917173 26917335 -215747018 + AluJb SINE Alu 136 297 -15 2835 224 234 15 chr1 26917575 26917875 -215746478 + L2 LINE L2 1293 1526 -1788 252 0 0 0 chr1 26917875 26917903 -215746450 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1935 114 4 4 chr1 26917904 26918184 -215746169 - AluSx SINE Alu -32 280 1 2835 224 234 15 chr1 26918184 26919005 -215745348 + L2 LINE L2 1525 2662 -652 2148 69 0 4 chr1 26919017 26919293 -215745060 - AluY SINE Alu -11 300 26 5325 133 22 77 chr1 26919293 26920224 -215744129 - L1PB4 LINE L1 -8 6148 5336 2220 110 0 7 chr1 26920224 26920533 -215743820 - AluSx SINE Alu -5 307 1 5325 133 22 77 chr1 26920533 26921508 -215742845 - L1PB4 LINE L1 -820 5336 4309 807 165 0 0 chr1 26921514 26921641 -215742712 - FLAM_C SINE Alu -4 129 3 251 145 0 113 chr1 26921652 26921714 -215742639 - L1PB4 LINE L1 -1819 4327 4273 757 96 29 0 chr1 26921766 26921870 -215742483 - U6 snRNA snRNA 0 107 1 1405 239 63 45 chr1 26921875 26922266 -215742087 + L2 LINE L2 2665 3056 -257 2179 99 7 0 chr1 26922266 26922568 -215741785 + AluSc SINE Alu 1 304 -5 1405 239 63 45 chr1 26922568 26922829 -215741524 + L2 LINE L2 3056 3311 -2 217 341 61 0 chr1 26922841 26922923 -215741430 - L2 LINE L2 -18 3295 3209 1582 169 20 10 chr1 26923230 26923526 -215740827 - AluJo SINE Alu -13 299 1 725 284 5 31 chr1 26923542 26923764 -215740589 + MIR SINE MIR 47 262 0 263 196 0 0 chr1 26924915 26924961 -215739392 + Alu SINE Alu 249 294 -8 2255 98 3 3 chr1 26924961 26925268 -215739085 + AluSx SINE Alu 1 307 -5 24 0 0 0 chr1 26925268 26925292 -215739061 + AT_rich Low_complexity Low_complexity 1 24 0 433 323 99 12 chr1 26925916 26926077 -215738276 + MIR SINE MIR 18 192 -70 631 267 53 22 chr1 26926085 26926310 -215738043 - L1M4 LINE L1 -3250 2896 2665 2054 133 0 7 chr1 26926341 26926643 -215737710 - AluSx SINE Alu -12 300 1 1292 254 48 33 chr1 26927129 26927460 -215736893 - MLT1I LTR MaLR 0 409 74 1076 53 0 0 chr1 26928002 26928134 -215736219 - AluY SINE Alu -179 132 1 346 285 96 20 chr1 26928667 26928846 -215735507 - MIR SINE MIR -29 233 45 2242 94 0 0 chr1 26928851 26929149 -215735204 - AluSq SINE Alu -15 298 1 979 143 30 0 chr1 26929154 26929322 -215735031 - AluJb SINE Alu -7 305 133 1652 160 7 14 chr1 26929593 26929886 -215734467 - AluJb SINE Alu -7 305 15 774 290 107 0 chr1 26929891 26930115 -215734238 + MIR SINE MIR 13 260 -2 333 155 0 0 chr1 26930220 26930278 -215734075 + CT-rich Low_complexity Low_complexity 3 60 0 873 154 23 0 chr1 26930296 26930471 -215733882 + CT-rich Low_complexity Low_complexity 2 180 0 1568 151 21 32 chr1 26930477 26930756 -215733597 - AluJo SINE Alu -36 276 1 277 238 24 189 chr1 26931479 26931727 -215732626 + MIR3 SINE MIR 1 207 -1 2249 112 0 0 chr1 26931787 26932099 -215732254 - AluSx SINE Alu 0 312 1 2049 84 4 0 chr1 26932232 26932495 -215731858 - AluSx SINE Alu -48 264 1 404 280 78 47 chr1 26933193 26933386 -215730967 + MIR SINE MIR 34 232 -30 659 277 104 0 chr1 26933445 26933647 -215730706 - MIR SINE MIR -15 247 25 2095 110 7 0 chr1 26933660 26933951 -215730402 - AluSx SINE Alu -19 293 1 347 251 15 143 chr1 26934291 26934348 -215730005 + MER5B DNA MER1_type 2 65 -113 1928 136 0 14 chr1 26934348 26934657 -215729696 + AluSx SINE Alu 1 305 0 347 251 15 143 chr1 26934657 26934801 -215729552 + MER5B DNA MER1_type 65 178 0 2238 99 0 0 chr1 26934825 26935127 -215729226 - AluSg SINE Alu -8 302 1 356 259 301 7 chr1 26935172 26935315 -215729038 - MIR3 SINE MIR -1 207 23 1038 167 22 0 chr1 26935428 26935608 -215728745 - AluJo SINE Alu -12 300 117 625 215 22 7 chr1 26935944 26936079 -215728274 + MER5B DNA MER1_type 42 178 0 2066 203 81 40 chr1 26936093 26936407 -215727946 - MLT1F LTR MaLR -54 488 147 2071 116 0 28 chr1 26936407 26936725 -215727628 + AluSg SINE Alu 2 310 0 2066 203 81 40 chr1 26936725 26936879 -215727474 - MLT1F LTR MaLR -395 147 1 651 256 17 6 chr1 26937093 26937265 -215727088 + MER5B DNA MER1_type 1 174 -4 1952 109 11 0 chr1 26937496 26937772 -215726581 + AluSq SINE Alu 11 289 -24 1010 144 0 0 chr1 26938783 26938943 -215725410 - AluSg/x SINE Alu -16 296 137 828 101 0 0 chr1 26939278 26939387 -215724966 + AluSp/q SINE Alu 173 281 -32 1028 102 28 0 chr1 26939387 26939640 -215724713 + GA-rich Low_complexity Low_complexity 1 260 0 242 257 99 50 chr1 26939645 26939746 -215724607 + MIR SINE MIR 157 262 0 320 222 56 21 chr1 26939772 26939916 -215724437 + L1ME4a LINE L1 5962 6110 -11 1189 178 49 0 chr1 26940839 26941064 -215723289 + L1MB5 LINE L1 5743 5978 -206 730 146 108 0 chr1 26941071 26941201 -215723152 + L1MB5 LINE L1 6030 6173 -1 22 35 0 0 chr1 26941230 26941259 -215723094 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 26941704 26941732 -215722621 + AT_rich Low_complexity Low_complexity 1 28 0 930 159 43 119 chr1 26941996 26942273 -215722080 - LTR54B LTR ERV1 -241 257 2 881 259 61 11 chr1 26942335 26942598 -215721755 - L2 LINE L2 -2 3311 3036 1295 104 0 6 chr1 26945211 26945374 -215718979 + AluSq SINE Alu 1 162 -151 415 212 7 7 chr1 26945380 26945517 -215718836 + (CATG)n Simple_repeat Simple_repeat 4 140 0 1195 142 0 0 chr1 26945536 26945698 -215718655 + AluSg/x SINE Alu 137 298 -12 406 129 8 2 chr1 26946169 26946296 -215718057 + MSTC LTR MaLR 271 428 0 1748 182 27 32 chr1 26947726 26948095 -215716258 - MLT1A2 LTR MaLR 0 374 8 347 198 88 11 chr1 26948096 26948187 -215716166 - L1ME4a LINE L1 -21 6100 6003 1827 178 0 36 chr1 26948273 26948577 -215715776 + AluJb SINE Alu 1 293 -19 2291 110 0 0 chr1 26948579 26948878 -215715475 + AluSx SINE Alu 1 299 -13 2191 106 3 13 chr1 26949591 26949893 -215714460 - AluSx SINE Alu -13 299 1 200 280 120 0 chr1 26950034 26950109 -215714244 - MIR SINE MIR -2 260 177 1848 162 17 0 chr1 26950179 26950481 -215713872 + AluJb SINE Alu 1 307 -5 1859 147 43 7 chr1 26951074 26951374 -215712979 + AluSx SINE Alu 1 311 -1 210 308 0 66 chr1 26951377 26951468 -215712885 + L2 LINE L2 2559 2643 -671 1372 122 5 31 chr1 26951691 26951913 -215712440 + AluSq SINE Alu 94 309 -4 1982 232 53 33 chr1 26951920 26952487 -215711866 + MER77 LTR ERV1 55 683 -4 1943 151 52 18 chr1 26952644 26953029 -215711324 - L1MB8 LINE L1 -2 6176 5779 2150 138 0 10 chr1 26953029 26953340 -215711013 - AluSx SINE Alu -4 308 1 350 259 301 7 chr1 26953385 26953528 -215710825 - MIR3 SINE MIR -1 207 23 1162 161 22 0 chr1 26953641 26953821 -215710532 - AluJo SINE Alu -12 300 117 621 237 15 0 chr1 26954157 26954292 -215710061 + MER5B DNA MER1_type 42 178 0 1920 203 81 40 chr1 26954306 26954620 -215709733 - MLT1F LTR MaLR -54 488 147 2229 117 0 25 chr1 26954620 26954937 -215709416 + AluSg SINE Alu 2 310 0 1920 203 81 40 chr1 26954937 26955091 -215709262 - MLT1F LTR MaLR -395 147 1 496 301 15 0 chr1 26955305 26955441 -215708912 + MER5B DNA MER1_type 1 138 -40 2255 68 39 0 chr1 26955586 26955865 -215708488 + AluSg SINE Alu 2 291 -19 215 192 19 19 chr1 26956938 26956990 -215707363 - MIR SINE MIR -92 170 119 2329 104 0 3 chr1 26957367 26957666 -215706687 - AluSx SINE Alu -14 298 1 825 270 25 34 chr1 26957731 26957968 -215706385 + MIR SINE MIR 19 253 -9 253 425 42 0 chr1 26957962 26958082 -215706271 - L2 LINE L2 -21 3251 3127 * 1632 80 14 24 chr1 26958565 26958777 -215705576 - AluSg/x SINE Alu -19 291 82 278 362 9 9 chr1 26959103 26959208 -215705145 - MIR SINE MIR -78 130 26 2112 128 47 33 chr1 26959377 26959736 -215704617 - THE1B LTR MaLR 0 364 1 182 179 71 54 chr1 26959783 26959839 -215704514 + MIR SINE MIR 62 118 -90 259 331 143 32 chr1 26960034 26960188 -215704165 - L2 LINE L2 0 3272 3102 1461 188 6 80 chr1 26960190 26960515 -215703838 - AluJo SINE Alu 0 302 2 715 190 8 0 chr1 26960528 26960649 -215703704 - FLAM_C SINE Alu -10 123 2 1975 110 89 0 chr1 26960923 26961205 -215703148 - AluSx SINE Alu -5 307 1 497 269 40 20 chr1 26961781 26961930 -215702423 - MIR3 SINE MIR -26 182 31 188 358 147 0 chr1 26961990 26962099 -215702254 - L2 LINE L2 -33 3239 3115 804 207 0 0 chr1 26962240 26962380 -215701973 - FAM SINE Alu -42 143 4 255 316 18 26 chr1 26963029 26963143 -215701210 - MIR3 SINE MIR -87 121 9 1881 150 3 11 chr1 26964132 26964453 -215699900 - AluJb SINE Alu 0 319 1 313 298 67 14 chr1 26964525 26964733 -215699620 - L1MC4a LINE L1 -1875 5933 5715 1384 122 5 10 chr1 26964758 26964954 -215699399 - AluJ SINE Alu -12 300 106 242 118 0 0 chr1 26965036 26965070 -215699283 + Alu SINE Alu 85 118 -184 548 274 119 40 chr1 26965162 26965195 -215699158 - L1ME4a LINE L1 -38 6083 6054 2518 81 3 0 chr1 26965195 26965503 -215698850 + AluSc SINE Alu 1 309 0 548 274 119 40 chr1 26965503 26965621 -215698732 - L1ME4a LINE L1 -67 6054 5947 695 169 8 8 chr1 26965621 26965739 -215698614 - AluJ SINE Alu -183 119 2 548 274 119 40 chr1 26965739 26965965 -215698388 - L1ME4a LINE L1 -174 5947 5675 233 217 0 50 chr1 26965976 26966036 -215698317 + MER51C LTR ERV1 92 148 -492 234 128 0 0 chr1 26966154 26966193 -215698160 + (T)n Simple_repeat Simple_repeat 1 39 0 673 269 85 36 chr1 26966296 26966686 -215697667 - L1MC4a LINE L1 -1851 5957 5549 248 244 0 58 chr1 26966693 26966779 -215697574 - L1ME4a LINE L1 -502 5619 5539 333 0 0 0 chr1 26966829 26966866 -215697487 + (CA)n Simple_repeat Simple_repeat 2 38 0 220 263 150 0 chr1 26967073 26967153 -215697200 + MIR SINE MIR 164 255 -7 208 313 152 54 chr1 26968170 26968282 -215696071 + MIR3 SINE MIR 41 163 -45 401 318 76 14 chr1 26968357 26968646 -215695707 + L1MC4a LINE L1 5620 5926 -1882 207 86 0 29 chr1 26968731 26968766 -215695587 + (CAGTT)n Simple_repeat Simple_repeat 4 37 0 2138 102 14 0 chr1 26968886 26969199 -215695154 + AluSg SINE Alu 1 310 0 314 244 43 17 chr1 26969249 26969364 -215694989 + L1ME4a LINE L1 5969 6086 -35 1160 157 127 55 chr1 26969498 26969740 -215694613 - MER66A LTR ERV1 -3 475 209 2237 113 0 0 chr1 26969740 26970033 -215694320 - AluSg SINE Alu -17 293 1 1160 157 127 55 chr1 26970033 26970121 -215694232 - MER66A LTR ERV1 -269 209 129 537 299 150 20 chr1 26970268 26970609 -215693744 + L2 LINE L2 2887 3271 -1 371 243 0 0 chr1 26970682 26970752 -215693601 - MIR SINE MIR -185 77 8 257 211 0 0 chr1 26970777 26970829 -215693524 - L2 LINE L2 -5 3308 3257 715 164 57 14 chr1 26970836 26970976 -215693377 + L1PA16 LINE L1 6007 6152 -14 2001 129 37 0 chr1 26970980 26971274 -215693079 - AluSx SINE Alu -7 305 1 2428 71 0 10 chr1 26971281 26971589 -215692764 - AluY SINE Alu -6 305 1 2087 147 3 0 chr1 26971917 26972216 -215692137 + AluSx SINE Alu 1 300 -12 1322 140 23 26 chr1 26972734 26972999 -215691354 + L1MD3 LINE L1 7711 7974 -21 30 27 0 0 chr1 26973005 26973042 -215691311 + AT_rich Low_complexity Low_complexity 1 37 0 2456 95 0 0 chr1 26973044 26973348 -215691005 + AluSg SINE Alu 1 304 -6 212 342 105 33 chr1 26973504 26973656 -215690697 - L2 LINE L2 -70 3202 3040 1684 198 48 17 chr1 26973700 26974054 -215690299 + MLT1A1 LTR MaLR 1 365 0 2214 118 0 3 chr1 26974243 26974539 -215689814 + AluSq SINE Alu 1 295 -18 283 223 108 22 chr1 26974550 26974689 -215689664 - L1ME4a LINE L1 -3 6118 5968 473 296 116 28 chr1 26974780 26974996 -215689357 - L3 LINE CR1 -11 1566 1332 2522 64 0 0 chr1 26975007 26975305 -215689048 - AluY SINE Alu -13 298 1 649 282 44 6 chr1 26975618 26975799 -215688554 - MIR SINE MIR -12 250 63 305 283 26 35 chr1 26975820 26975933 -215688420 + MIR3 SINE MIR 51 162 -46 261 260 180 30 chr1 26975934 26976034 -215688319 + MIR SINE MIR 1 115 -147 1300 211 59 12 chr1 26976034 26976616 -215687737 - MER115 DNA AcHobo 0 693 28 2402 84 3 34 chr1 26976637 26976960 -215687393 + AluSp SINE Alu 1 313 0 710 175 0 9 chr1 26977055 26977169 -215687184 - MER81 DNA DNA 0 114 2 483 262 87 0 chr1 26977171 26977297 -215687056 + MIR SINE MIR 124 260 -2 1901 157 7 7 chr1 26977337 26977637 -215686716 + AluJb SINE Alu 13 312 0 252 155 58 78 chr1 26977637 26977740 -215686613 - MER104 DNA Tc2 -76 104 4 231 260 137 0 chr1 26977749 26977822 -215686531 - L2 LINE L2 -38 3275 3193 712 301 38 0 chr1 26978141 26978380 -215685973 + L1MC4a LINE L1 5549 5796 -2012 2120 131 0 3 chr1 26978467 26978750 -215685603 + AluSx SINE Alu 1 282 -30 1272 153 119 75 chr1 26978794 26979062 -215685291 - AluJo SINE Alu -30 282 3 241 280 51 25 chr1 26979070 26979188 -215685165 + L1MC4a LINE L1 5862 5982 -1826 760 89 0 0 chr1 26979328 26979429 -215684924 + MER72 LTR ERV1 601 701 -21 266 103 0 0 chr1 26979429 26979468 -215684885 + HERVH LTR ERV1 105 143 -7570 * 557 161 29 73 chr1 26979436 26979573 -215684780 + HERVH LTR ERV1 2009 2139 -5574 984 184 83 109 chr1 26979580 26980003 -215684350 + LTR7 LTR ERV1 1 412 -38 216 0 0 0 chr1 26980003 26980027 -215684326 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 2362 99 0 3 chr1 26980142 26980446 -215683907 + AluSq SINE Alu 1 303 -10 263 267 47 12 chr1 26980474 26980560 -215683793 - MIR SINE MIR 0 262 174 2409 86 0 0 chr1 26980622 26980926 -215683427 - AluY SINE Alu -7 304 1 292 231 100 77 chr1 26980955 26981085 -215683268 - L2 LINE L2 -14 3258 3126 896 129 0 0 chr1 26981797 26981913 -215682440 + FLAM_C SINE Alu 1 116 -27 450 0 0 0 chr1 26981929 26981979 -215682374 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1566 174 13 58 chr1 26986233 26986543 -215677810 - AluJo SINE Alu -16 296 1 310 334 2 59 chr1 26987147 26987287 -215677066 - MIR SINE MIR -72 136 5 458 208 54 8 chr1 26987465 26987595 -215676758 - L1ME4a LINE L1 -14 6107 5972 239 198 151 67 chr1 26987613 26987741 -215676612 - MIR SINE MIR -55 207 69 2214 111 14 0 chr1 26988557 26988846 -215675507 - AluSx SINE Alu -19 293 1 198 0 0 0 chr1 26989434 26989456 -215674897 + (T)n Simple_repeat Simple_repeat 1 22 0 222 210 97 105 chr1 26990810 26990934 -215673419 + MIR SINE MIR 140 262 0 256 315 65 0 chr1 26991566 26991674 -215672679 + MIR3 SINE MIR 87 201 -7 194 141 165 106 chr1 26992768 26992853 -215671500 - MIR SINE MIR -145 117 28 2446 88 7 0 chr1 26993235 26993540 -215670813 - AluSg SINE Alu -2 308 2 340 200 62 12 chr1 26993553 26993633 -215670720 + L3 LINE CR1 1491 1574 -3 434 293 85 23 chr1 26994287 26994459 -215669894 - MIR SINE MIR -57 205 25 233 338 0 0 chr1 26994500 26994571 -215669782 + L2 LINE L2 3180 3250 -63 669 286 122 8 chr1 26994786 26995048 -215669305 + MER102b DNA MER1_type 8 299 -42 2335 66 0 14 chr1 26995188 26995474 -215668879 + AluY SINE Alu 21 302 -9 195 273 61 0 chr1 26995563 26995629 -215668724 - L2 LINE L2 -7 3265 3196 * 199 290 65 32 chr1 26995602 26995695 -215668658 + MER5A DNA MER1_type 28 123 -66 700 152 0 58 chr1 26995703 26995841 -215668512 + FLAM_C SINE Alu 2 131 -2 1879 165 0 7 chr1 26995885 26996176 -215668177 - AluJb SINE Alu -23 289 1 272 316 96 0 chr1 26996324 26996460 -215667893 + MER91A DNA MER1_type 15 163 -33 2312 110 0 0 chr1 26996733 26997033 -215667320 + AluSq SINE Alu 1 300 -13 561 307 83 0 chr1 26997247 26997439 -215666914 + MER5C DNA MER1_type 1 208 -116 525 187 9 0 chr1 26997445 26997552 -215666801 - L1MB4 LINE L1 -6 6174 6067 225 307 61 26 chr1 26998031 26998145 -215666208 - MIR SINE MIR -58 150 33 189 0 0 0 chr1 26998171 26998192 -215666161 + (A)n Simple_repeat Simple_repeat 1 21 0 2164 91 7 4 chr1 26998192 26998466 -215665887 - AluSx SINE Alu -37 275 1 33 0 0 0 chr1 26998466 26998499 -215665854 + AT_rich Low_complexity Low_complexity 1 33 0 219 234 0 0 chr1 26998943 26998990 -215665363 + MIR3 SINE MIR 131 177 -31 591 234 45 60 chr1 26999154 26999226 -215665127 - MIR SINE MIR -4 258 186 2358 101 7 0 chr1 26999226 26999523 -215664830 - AluSq SINE Alu -14 299 1 591 234 45 60 chr1 26999523 26999651 -215664702 - MIR SINE MIR -76 186 61 3310 90 9 0 chr1 26999821 27000275 -215664078 - LTR22A LTR ERVK 0 458 1 432 280 177 0 chr1 27000436 27000611 -215663742 - L2 LINE L2 -4 3309 3104 503 274 206 14 chr1 27000635 27001150 -215663203 - L2 LINE L2 -343 2971 2358 480 262 60 36 chr1 27001702 27001870 -215662483 + MLT1J LTR MaLR 223 394 -117 508 267 35 0 chr1 27002077 27002193 -215662160 - L2 LINE L2 -1 3312 3193 298 246 320 17 chr1 27002347 27002522 -215661831 - MIR SINE MIR -3 259 32 207 0 0 0 chr1 27002565 27002588 -215661765 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2443 92 0 0 chr1 27002589 27002893 -215661460 + AluSc SINE Alu 1 304 -5 290 236 94 138 chr1 27003428 27003688 -215660665 - L2 LINE L2 -49 3223 2978 2145 118 10 10 chr1 27003688 27003994 -215660359 + AluSc SINE Alu 1 306 -3 290 236 94 138 chr1 27003994 27004051 -215660302 - L2 LINE L2 -294 2978 2920 405 302 72 0 chr1 27004120 27004259 -215660094 - MIR3 SINE MIR -7 201 53 704 185 8 0 chr1 27004488 27004618 -215659735 + MER5B DNA MER1_type 48 178 0 264 185 248 57 chr1 27004934 27005077 -215659276 + MIR SINE MIR 19 183 -58 189 318 15 0 chr1 27005789 27005855 -215658498 + MIR SINE MIR 69 135 -73 2569 73 0 0 chr1 27005856 27006159 -215658194 - AluY SINE Alu -8 303 1 22 0 0 0 chr1 27006413 27006435 -215657918 + AT_rich Low_complexity Low_complexity 1 22 0 1336 183 17 4 chr1 27006466 27006733 -215657620 - AluJo SINE Alu 0 309 40 406 182 30 106 chr1 27006739 27006809 -215657544 - L1MB7 LINE L1 0 6184 6127 2304 81 0 27 chr1 27006809 27007106 -215657247 + AluY SINE Alu 2 290 -21 406 182 30 106 chr1 27007106 27007167 -215657186 - L1MB7 LINE L1 -57 6127 6063 2244 110 0 26 chr1 27007167 27007477 -215656876 - AluSq SINE Alu -11 302 1 858 169 81 12 chr1 27007480 27007640 -215656713 - FRAM SINE Alu -10 166 1 189 0 0 0 chr1 27007750 27007771 -215656582 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2307 76 4 0 chr1 27007777 27008052 -215656301 - AluSp SINE Alu -37 276 1 242 250 43 54 chr1 27008125 27008217 -215656136 - L2 LINE L2 -349 2964 2874 1778 130 115 4 chr1 27008408 27008677 -215655676 + AluSx SINE Alu 1 299 -13 230 230 220 10 chr1 27008725 27008825 -215655528 - LTR16C LTR ERVL -1 490 370 271 316 51 25 chr1 27009575 27009771 -215654582 + L2 LINE L2 2817 3017 -255 640 319 38 9 chr1 27010002 27010215 -215654138 - MIR SINE MIR 0 262 44 249 258 68 0 chr1 27010788 27010871 -215653482 + MIR SINE MIR 51 140 -68 348 212 0 0 chr1 27011068 27011134 -215653219 + MIR SINE MIR 81 146 -62 987 162 22 11 chr1 27011136 27011321 -215653032 - MER39 LTR ERV1 0 707 521 381 91 0 0 chr1 27011317 27011372 -215652981 + MER39B LTR ERV1 411 465 -188 * 809 104 0 0 chr1 27011389 27011495 -215652858 + AluSg/x SINE Alu 189 294 -15 265 30 0 0 chr1 27011576 27011609 -215652744 - AluSc SINE Alu -76 223 191 1477 118 180 78 chr1 27011626 27011778 -215652575 - MER39B LTR ERV1 -187 466 331 2331 111 10 0 chr1 27011778 27012085 -215652268 - AluSg SINE Alu 0 310 1 1477 118 180 78 chr1 27012085 27012128 -215652225 - MER39B LTR ERV1 -322 331 294 180 0 0 0 chr1 27012128 27012148 -215652205 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 1477 118 180 78 chr1 27012148 27012187 -215652166 - MER39B LTR ERV1 -359 294 260 2427 91 0 0 chr1 27012187 27012485 -215651868 - AluSc SINE Alu -11 298 1 1477 118 180 78 chr1 27012485 27012631 -215651722 - MER39B LTR ERV1 -393 260 45 2280 90 0 0 chr1 27012631 27012910 -215651443 - AluSx SINE Alu -12 300 22 192 217 0 0 chr1 27012921 27012967 -215651386 + CT-rich Low_complexity Low_complexity 1 46 0 637 81 30 10 chr1 27012977 27013076 -215651277 - HY1 scRNA scRNA -9 103 3 307 79 0 143 chr1 27013077 27013140 -215651213 - MER39B LTR ERV1 -599 54 1 506 228 24 13 chr1 27013192 27013341 -215651012 + MIR SINE MIR 98 248 -14 223 120 20 20 chr1 27013646 27013696 -215650657 + CT-rich Low_complexity Low_complexity 1 50 0 725 263 0 0 chr1 27013701 27013876 -215650477 - FRAM SINE Alu -1 175 1 308 320 16 10 chr1 27013946 27014100 -215650253 - MIR SINE MIR -55 207 52 824 195 7 7 chr1 27016237 27016391 -215647962 + FRAM SINE Alu 8 161 -15 2480 94 3 0 chr1 27016393 27016700 -215647653 + AluSp SINE Alu 3 310 -3 1701 179 28 0 chr1 27016703 27016988 -215647365 + AluJb SINE Alu 1 293 -19 1912 139 27 10 chr1 27017763 27018064 -215646289 + AluJb SINE Alu 1 306 -6 210 243 146 19 chr1 27018094 27018197 -215646156 + L2 LINE L2 3150 3265 -7 406 238 32 24 chr1 27018208 27018334 -215646019 - MIR3 SINE MIR -31 177 51 322 317 54 30 chr1 27018349 27018516 -215645837 - MIR SINE MIR -35 227 57 203 250 33 125 chr1 27018696 27018816 -215645537 + L2 LINE L2 3198 3306 -7 188 108 0 27 chr1 27019006 27019043 -215645310 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 610 265 123 18 chr1 27019591 27019810 -215644543 - MIR SINE MIR 0 262 21 219 264 35 58 chr1 27019916 27020003 -215644350 + MIR SINE MIR 49 133 -75 2323 113 7 0 chr1 27020974 27021284 -215643069 - AluSx SINE Alu 0 312 1 296 281 141 0 chr1 27021292 27021413 -215642940 + MIR SINE MIR 104 241 -21 2464 71 0 3 chr1 27021431 27021727 -215642626 - AluSc SINE Alu -14 295 1 480 194 8 97 chr1 27021766 27021843 -215642510 + MER103 DNA DNA 4 66 -100 2176 135 0 3 chr1 27021843 27022147 -215642206 - AluJb SINE Alu -9 303 1 480 194 8 97 chr1 27022147 27022203 -215642150 + MER103 DNA DNA 66 125 -41 252 337 21 0 chr1 27022328 27022423 -215641930 + MIR3 SINE MIR 88 184 -24 1718 163 10 40 chr1 27023243 27023543 -215640810 + AluJo SINE Alu 5 295 -17 2269 86 7 0 chr1 27023543 27023860 -215640493 + AluSx SINE Alu 1 319 0 573 217 17 0 chr1 27023885 27024000 -215640353 + MIR SINE MIR 66 182 -80 367 310 70 0 chr1 27024033 27024175 -215640178 + L2 LINE L2 3162 3313 0 2416 89 0 10 chr1 27024559 27024737 -215639616 - AluSp SINE Alu -2 311 136 2509 74 7 0 chr1 27024737 27025046 -215639307 - AluY SINE Alu 0 311 1 2416 89 0 10 chr1 27025046 27025180 -215639173 - AluSp SINE Alu -177 136 2 367 321 133 41 chr1 27025186 27025397 -215638956 - L2 LINE L2 -1 3271 3081 2330 70 36 7 chr1 27025397 27025698 -215638655 - AluY SINE Alu -1 310 1 1587 180 30 30 chr1 27025702 27025997 -215638356 - AluJo SINE Alu -17 295 1 367 321 133 41 chr1 27025997 27026254 -215638099 - L2 LINE L2 -193 3079 2751 424 200 158 0 chr1 27026451 27026546 -215637807 - L2 LINE L2 -1 3312 3203 2484 71 13 3 chr1 27028530 27028840 -215635513 - AluSp SINE Alu 0 313 1 250 225 67 11 chr1 27028932 27029021 -215635332 - L2 LINE L2 -263 3009 2916 369 0 0 0 chr1 27029633 27029674 -215634679 + (CA)n Simple_repeat Simple_repeat 2 42 0 1915 152 0 11 chr1 27029709 27029992 -215634361 + AluSx SINE Alu 1 280 -32 2341 60 18 0 chr1 27030117 27030401 -215633952 + AluSg SINE Alu 1 289 -21 21 36 0 0 chr1 27031063 27031091 -215633262 + GC_rich Low_complexity Low_complexity 1 28 0 194 276 181 19 chr1 27031891 27031996 -215632357 - MIR SINE MIR -130 132 11 301 263 150 23 chr1 27032015 27032148 -215632205 - MIR SINE MIR -1 261 112 392 287 28 28 chr1 27032227 27032370 -215631983 - MIR SINE MIR 0 262 120 2370 74 0 0 chr1 27032375 27032686 -215631667 - AluY SINE Alu 0 312 2 2356 96 3 0 chr1 27032689 27032991 -215631362 - AluSq SINE Alu -10 303 1 2396 72 16 10 chr1 27033023 27033328 -215631025 + AluSx SINE Alu 1 307 -5 1730 152 3 34 chr1 27033448 27033744 -215630609 - AluJb SINE Alu -25 287 1 201 39 0 0 chr1 27033864 27033890 -215630463 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1962 117 36 4 chr1 27033894 27034168 -215630185 - AluSp SINE Alu -30 283 1 2417 106 3 0 chr1 27034176 27034487 -215629866 - AluSx SINE Alu 0 312 1 25 65 0 0 chr1 27035066 27035112 -215629241 + AT_rich Low_complexity Low_complexity 1 46 0 568 165 87 26 chr1 27035119 27035234 -215629119 + FLAM_C SINE Alu 12 133 -10 1433 215 197 34 chr1 27035254 27035399 -215628954 + MLT1F1 LTR MaLR 1 121 -446 1682 116 0 0 chr1 27035399 27035623 -215628730 + AluSg/x SINE Alu 85 308 -2 1433 215 197 34 chr1 27035623 27035914 -215628439 + MLT1F1 LTR MaLR 121 508 -59 574 291 109 47 chr1 27035914 27036234 -215628119 + MLT1F1-int LTR MaLR 1032 1371 0 1203 147 93 58 chr1 27036234 27036327 -215628026 + MLT1F1 LTR MaLR 1 89 -478 2040 123 22 0 chr1 27036327 27036636 -215627717 - AluSx SINE Alu 0 315 1 1203 147 93 58 chr1 27036636 27036946 -215627407 + MLT1F1 LTR MaLR 89 503 -64 2107 136 10 0 chr1 27036946 27037254 -215627099 - AluSx SINE Alu -1 311 1 1203 147 93 58 chr1 27037254 27037322 -215627031 + MLT1F1 LTR MaLR 503 567 0 5909 184 80 118 chr1 27037350 27037830 -215626523 + L1MB7 LINE L1 2533 3030 -3116 2187 89 65 3 chr1 27037830 27038121 -215626232 + AluSq SINE Alu 1 309 -4 5909 184 80 118 chr1 27038121 27038320 -215626033 + L1MB7 LINE L1 3030 3235 -2911 1859 153 4 7 chr1 27038320 27038601 -215625752 + AluJb SINE Alu 5 284 -28 5909 184 80 118 chr1 27038601 27038639 -215625714 + L1MB7 LINE L1 3235 3273 -2873 1402 124 20 0 chr1 27038639 27038840 -215625513 + AluSg/x SINE Alu 103 307 -3 5909 184 80 118 chr1 27038840 27040329 -215624024 + L1MB7 LINE L1 3273 4850 -1296 221 0 35 0 chr1 27040329 27040358 -215623995 + (TTG)n Simple_repeat Simple_repeat 2 31 0 316 123 0 18 chr1 27040429 27040486 -215623867 - L1MB8 LINE L1 -7 6171 6116 2463 146 39 46 chr1 27040486 27040633 -215623720 + L1MB7 LINE L1 5639 5786 -398 2133 145 0 10 chr1 27040633 27040944 -215623409 + AluSx SINE Alu 1 308 -4 2463 146 39 46 chr1 27040944 27041326 -215623027 + L1MB7 LINE L1 5786 6175 -9 2061 239 51 32 chr1 27041486 27042053 -215622300 - MER77 LTR ERV1 -4 601 55 1349 132 5 18 chr1 27042060 27042279 -215622074 - AluSq SINE Alu -4 309 94 192 342 0 13 chr1 27042512 27042593 -215621760 - L2 LINE L2 -676 2638 2559 1866 147 43 7 chr1 27042596 27042896 -215621457 - AluSx SINE Alu -1 311 1 2058 127 3 13 chr1 27043005 27043313 -215621040 + AluSx SINE Alu 1 305 -7 1879 128 25 0 chr1 27043846 27044128 -215620225 - AluSq SINE Alu -24 289 1 * 2239 98 10 0 chr1 27044128 27044432 -215619921 - AluSx SINE Alu -5 307 1 302 365 50 33 chr1 27045265 27045446 -215618907 - L2 LINE L2 -558 2756 2573 2068 93 33 3 chr1 27046171 27046471 -215617882 + AluSq SINE Alu 1 309 -4 11709 119 34 40 chr1 27046472 27046959 -215617394 - Tigger1 DNA MER2_type -362 2056 1568 692 209 8 22 chr1 27046959 27047093 -215617260 - FLAM_A SINE Alu 0 133 2 11709 119 34 40 chr1 27047093 27047383 -215616970 - Tigger1 DNA MER2_type -850 1568 1278 1783 149 28 0 chr1 27047383 27047671 -215616682 - AluJo SINE Alu -16 296 1 11709 119 34 40 chr1 27047671 27048746 -215615607 - Tigger1 DNA MER2_type -1140 1278 213 2351 51 7 3 chr1 27048746 27049040 -215615313 + AluY SINE Alu 1 295 -16 11709 119 34 40 chr1 27049040 27049251 -215615102 - Tigger1 DNA MER2_type -2205 213 2 268 305 188 0 chr1 27049570 27049724 -215614629 + L2 LINE L2 3120 3302 -11 1177 239 14 32 chr1 27049782 27050066 -215614287 - MLT1G1 LTR MaLR -302 293 15 1521 280 111 34 chr1 27050080 27050604 -215613749 - L1MEc LINE L1 -5055 1341 859 2222 94 3 10 chr1 27050604 27050903 -215613450 + AluSq SINE Alu 1 297 -16 1521 280 111 34 chr1 27050903 27051278 -215613075 - L1MEc LINE L1 -5537 859 373 572 265 11 17 chr1 27051352 27051533 -215612820 - L1MEc LINE L1 -6150 246 67 489 245 90 60 chr1 27051964 27052042 -215612311 - MIR SINE MIR 0 262 188 2389 82 0 0 chr1 27052042 27052347 -215612006 - AluSg SINE Alu -5 305 1 489 245 90 60 chr1 27052347 27052468 -215611885 - MIR SINE MIR -74 188 57 1078 53 0 0 chr1 27052480 27052611 -215611742 - AluSg SINE Alu -179 131 1 2251 90 0 10 chr1 27055935 27056236 -215608117 - AluSc SINE Alu -11 298 1 1406 145 114 35 chr1 27056780 27057069 -215607284 - AluJo SINE Alu 0 312 1 1690 158 14 10 chr1 27057160 27057452 -215606901 + AluJo SINE Alu 7 299 -13 858 271 43 27 chr1 27058659 27058917 -215605436 - MIR SINE MIR 0 262 1 1670 136 82 0 chr1 27061990 27062269 -215602084 - AluSx SINE Alu -10 302 1 1838 137 7 7 chr1 27062545 27062829 -215601524 + AluSx SINE Alu 1 284 -28 1921 147 0 23 chr1 27062832 27063132 -215601221 + AluSx SINE Alu 4 296 -16 1983 125 14 3 chr1 27063134 27063431 -215600922 + AluSx SINE Alu 1 300 -12 215 127 36 36 chr1 27064335 27064390 -215599963 - L2 LINE L2 -188 3084 3030 1603 185 24 3 chr1 27064436 27064723 -215599630 + AluSx SINE Alu 1 293 -19 23 54 0 0 chr1 27064970 27065007 -215599346 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr1 27065275 27065314 -215599039 + AT_rich Low_complexity Low_complexity 1 39 0 229 266 62 0 chr1 27065392 27065456 -215598897 - MIR SINE MIR -59 149 82 361 192 26 0 chr1 27065560 27065638 -215598715 + MIR SINE MIR 183 262 0 828 164 0 8 chr1 27066395 27066529 -215597824 + FLAM_A SINE Alu 1 133 0 2470 66 0 0 chr1 27067744 27068049 -215596304 + AluY SINE Alu 1 305 -6 405 342 25 12 chr1 27068326 27068487 -215595866 + MIR SINE MIR 58 220 -42 405 311 68 16 chr1 27068577 27068767 -215595586 - L2 LINE L2 0 3272 3073 230 312 29 51 chr1 27069046 27069184 -215595169 - MIR3 SINE MIR -62 146 12 219 282 91 18 chr1 27069317 27069427 -215594926 + L2 LINE L2 2666 2783 -531 387 0 0 0 chr1 27071139 27071182 -215593171 + (CA)n Simple_repeat Simple_repeat 1 43 0 776 250 60 0 chr1 27071436 27071604 -215592749 + MER45A DNA AcHobo 1 178 0 424 274 71 30 chr1 27071884 27072049 -215592304 + LTR16A1 LTR ERVL 236 412 -45 197 32 0 32 chr1 27072049 27072080 -215592273 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 424 274 71 30 chr1 27072080 27072111 -215592242 + LTR16A1 LTR ERVL 412 440 -17 621 220 126 0 chr1 27072859 27073018 -215591335 + MIR SINE MIR 27 205 -57 2125 103 0 0 chr1 27073055 27073356 -215590997 + AluSx SINE Alu 1 301 0 235 191 64 0 chr1 27075458 27075505 -215588848 + L2 LINE L2 3223 3272 0 265 269 113 36 chr1 27075790 27075978 -215588375 + MIR SINE MIR 14 211 -51 200 333 21 21 chr1 27076198 27076291 -215588062 - MIR SINE MIR -109 153 61 504 270 105 47 chr1 27076955 27077251 -215587102 + L2 LINE L2 2914 3226 -46 402 255 111 30 chr1 27077415 27077620 -215586733 - MIR SINE MIR -51 211 12 477 191 0 0 chr1 27077953 27078063 -215586290 + (TG)n Simple_repeat Simple_repeat 2 111 0 306 291 0 35 chr1 27078065 27078151 -215586202 + L1MCa LINE L1 1995 2077 -4349 1620 165 9 22 chr1 27078193 27078509 -215585844 - AluJo SINE Alu 0 312 1 192 187 0 1 chr1 27079192 27079227 -215585126 - MIR SINE MIR -56 152 105 358 287 14 28 chr1 27079954 27080097 -215584256 - MIR3 SINE MIR -61 147 7 203 246 33 0 chr1 27081027 27081088 -215583265 + L2 LINE L2 2990 3052 -220 273 349 47 12 chr1 27081167 27081336 -215583017 - MIR SINE MIR -28 234 60 320 250 0 0 chr1 27082198 27082294 -215582059 + (CAGCC)n Simple_repeat Simple_repeat 1 96 0 210 232 295 0 chr1 27083223 27083335 -215581018 - L2 LINE L2 0 3313 3169 2235 68 0 56 chr1 27083431 27083754 -215580599 + AluY SINE Alu 1 305 -6 221 301 96 0 chr1 27083917 27084053 -215580300 + L2 LINE L2 2324 2472 -842 264 284 51 47 chr1 27084447 27084662 -215579691 - L2 LINE L2 -239 3033 2818 265 271 62 42 chr1 27084972 27085116 -215579237 + L2 LINE L2 2937 3083 -189 490 261 55 18 chr1 27085573 27085743 -215578610 - MIR SINE MIR -55 153 27 28 0 0 0 chr1 27085907 27085935 -215578418 + GC_rich Low_complexity Low_complexity 1 28 0 402 302 21 32 chr1 27086227 27086416 -215577937 + MER5A DNA MER1_type 2 188 -1 2054 92 41 17 chr1 27086577 27086870 -215577483 + AluSx SINE Alu 11 310 -2 370 244 12 0 chr1 27086897 27086983 -215577370 + MIR SINE MIR 70 156 -106 1942 146 3 0 chr1 27087914 27088216 -215576137 + AluSx SINE Alu 1 303 -9 1972 149 3 0 chr1 27088280 27088576 -215575777 + AluJb SINE Alu 1 297 -15 577 319 71 9 chr1 27088660 27088870 -215575483 + MIR SINE MIR 28 250 -12 1859 133 23 7 chr1 27088879 27089179 -215575174 - AluJb SINE Alu -1 311 7 222 259 74 32 chr1 27089193 27089332 -215575021 - MIR3 SINE MIR -76 132 15 219 213 0 53 chr1 27089989 27090064 -215574289 + C-rich Low_complexity Low_complexity 2 72 0 241 216 30 42 chr1 27090201 27090368 -215573985 + (CGG)n Simple_repeat Simple_repeat 2 166 0 278 58 14 58 chr1 27090383 27090452 -215573901 + (CGGGG)n Simple_repeat Simple_repeat 1 66 0 260 376 60 0 chr1 27091458 27091575 -215572778 - MIR SINE MIR -16 246 123 254 250 31 0 chr1 27091737 27091801 -215572552 + L2 LINE L2 3205 3270 -2 366 327 110 49 chr1 27092628 27093115 -215571238 - L2 LINE L2 0 3272 2741 474 157 0 0 chr1 27093390 27093473 -215570880 + (CA)n Simple_repeat Simple_repeat 2 84 0 546 320 106 48 chr1 27093839 27094299 -215570054 - L2 LINE L2 -23 3290 2774 890 206 0 0 chr1 27094299 27094454 -215569899 - FRAM SINE Alu -10 156 2 546 320 106 48 chr1 27094454 27094525 -215569828 - L2 LINE L2 -539 2774 2709 2224 111 0 0 chr1 27094527 27094834 -215569519 - AluSq SINE Alu -6 307 1 1330 186 43 36 chr1 27094841 27095279 -215569074 + L1MB7 LINE L1 5696 6170 -14 799 270 165 42 chr1 27095287 27095617 -215568736 - L2 LINE L2 -598 2716 2301 2290 88 0 3 chr1 27095617 27095914 -215568439 + AluSc SINE Alu 1 296 -13 799 270 165 42 chr1 27095914 27096087 -215568266 - L2 LINE L2 -1013 2301 2151 325 252 211 0 chr1 27096339 27096462 -215567891 - MER5B DNA MER1_type -3 175 27 275 288 45 54 chr1 27096645 27096756 -215567597 + MER81 DNA DNA 3 112 -2 1841 116 6 98 chr1 27096973 27097300 -215567053 - AluSx SINE Alu -15 297 1 933 194 0 0 chr1 27097302 27097457 -215566896 - FRAM SINE Alu -11 155 1 487 226 25 98 chr1 27097514 27097701 -215566652 + L1ME3 LINE L1 5945 6113 -49 2154 110 27 0 chr1 27097701 27098000 -215566353 + AluSx SINE Alu 1 307 -5 487 226 25 98 chr1 27098000 27098047 -215566306 + L1ME3 LINE L1 6113 6162 0 641 172 0 31 chr1 27098172 27098300 -215566053 - FRAM SINE Alu 0 176 53 241 367 28 0 chr1 27099269 27099378 -215564975 + L2 LINE L2 2672 2783 -531 821 210 110 27 chr1 27099378 27099552 -215564801 - MSTD LTR MaLR 0 396 238 249 33 0 0 chr1 27099552 27099582 -215564771 + (CAAG)n Simple_repeat Simple_repeat 3 32 0 821 210 110 27 chr1 27099582 27099742 -215564611 - MSTD LTR MaLR -158 238 1 354 228 276 0 chr1 27099820 27099965 -215564388 + L2 LINE L2 2881 3065 -248 202 151 170 19 chr1 27100439 27100492 -215563861 + MIR SINE MIR 87 147 -61 339 301 15 53 chr1 27101005 27101138 -215563215 - MIR SINE MIR -116 146 19 272 214 71 0 chr1 27101433 27101503 -215562850 - MER3 DNA MER1_type 0 209 135 2301 88 0 0 chr1 27101503 27101800 -215562553 + AluSg SINE Alu 1 297 -13 1284 97 6 0 chr1 27101800 27101975 -215562378 + AluSc SINE Alu 132 307 -2 305 187 93 0 chr1 27101975 27102050 -215562303 - MER3 DNA MER1_type -73 136 55 545 231 112 12 chr1 27102289 27102363 -215561990 + MER5A DNA MER1_type 4 69 -120 1474 182 71 0 chr1 27102363 27102643 -215561710 + AluJo SINE Alu 1 300 -12 545 231 112 12 chr1 27102643 27102737 -215561616 + MER5A DNA MER1_type 69 189 0 227 277 27 98 chr1 27103849 27104033 -215560320 + MLT1K LTR MaLR 1 171 -417 401 270 8 16 chr1 27104160 27104286 -215560067 + LTR67 LTR ERVL 433 557 0 466 324 127 12 chr1 27104286 27104616 -215559737 + L1ME4a LINE L1 5738 6105 -16 180 0 0 0 chr1 27104626 27104646 -215559707 + (T)n Simple_repeat Simple_repeat 1 20 0 291 296 190 21 chr1 27104820 27104962 -215559391 - MIR SINE MIR -79 183 18 1958 112 35 11 chr1 27105058 27105345 -215559008 + AluSx SINE Alu 1 294 -18 545 345 125 13 chr1 27105482 27105795 -215558558 + L2 LINE L2 2965 3312 -1 330 298 35 28 chr1 27105781 27105922 -215558431 + MIR3 SINE MIR 4 145 -63 * 180 270 54 40 chr1 27107085 27107159 -215557194 + MIR3 SINE MIR 9 83 -125 1218 167 0 23 chr1 27108473 27108689 -215555664 - AluJb SINE Alu -18 294 84 305 269 54 0 chr1 27109991 27110084 -215554269 + MER103 DNA DNA 2 99 -67 552 293 41 37 chr1 27110316 27110558 -215553795 - MIR SINE MIR 0 262 20 485 330 23 17 chr1 27111529 27111705 -215552648 + MIR3 SINE MIR 30 206 -2 268 135 135 0 chr1 27111940 27111992 -215552361 + MIR SINE MIR 88 146 -62 308 323 116 6 chr1 27113335 27113499 -215550854 + L2 LINE L2 2639 2820 -494 806 295 30 4 chr1 27113518 27113755 -215550598 + MIR SINE MIR 19 261 -1 291 263 10 176 chr1 27113878 27114008 -215550345 - L2 LINE L2 -39 3274 3124 2136 109 0 7 chr1 27114008 27114301 -215550052 - AluSx SINE Alu -21 291 1 291 263 10 176 chr1 27114301 27114383 -215549970 - L2 LINE L2 -189 3124 3124 1931 172 0 10 chr1 27114383 27114697 -215549656 + AluSx SINE Alu 1 311 -1 291 263 10 176 chr1 27114697 27114784 -215549569 - L2 LINE L2 -189 3124 3024 202 313 164 52 chr1 27114800 27115110 -215549243 + L2 LINE L2 2916 3260 -12 284 170 0 0 chr1 27115767 27115820 -215548533 - MER66B LTR ERV1 -139 347 295 643 234 82 6 chr1 27115825 27115996 -215548357 + MIR SINE MIR 46 229 -33 401 175 135 56 chr1 27116110 27116236 -215548117 + MIR SINE MIR 26 161 -101 430 231 175 7 chr1 27116379 27116522 -215547831 - MER5B DNA MER1_type -2 176 10 575 239 129 7 chr1 27116535 27116690 -215547663 - MER5B DNA MER1_type -2 176 3 371 188 21 0 chr1 27117255 27117351 -215547002 + (TCCA)n Simple_repeat Simple_repeat 2 99 0 882 305 191 3 chr1 27117374 27117989 -215546364 - L2 LINE L2 0 3313 2562 199 270 0 32 chr1 27117988 27118051 -215546302 - MIR3 SINE MIR -54 154 94 * 444 261 14 49 chr1 27118216 27118358 -215545995 + MIR3 SINE MIR 57 193 -15 243 314 59 8 chr1 27118468 27118586 -215545767 + MIR SINE MIR 18 141 -67 366 355 130 0 chr1 27119887 27120056 -215544297 - MIR SINE MIR -9 253 63 266 360 84 22 chr1 27120733 27120911 -215543442 + L2 LINE L2 3083 3271 -1 454 177 33 29 chr1 27121160 27122107 -215542246 + (TG)n Simple_repeat Simple_repeat 1 950 0 439 190 35 29 chr1 27122187 27122361 -215541992 + (TG)n Simple_repeat Simple_repeat 1 175 0 281 178 23 8 chr1 27122469 27122598 -215541755 + (TG)n Simple_repeat Simple_repeat 1 131 0 385 215 34 23 chr1 27122611 27122788 -215541565 + (TG)n Simple_repeat Simple_repeat 2 180 0 375 195 34 18 chr1 27122815 27123145 -215541208 + (TG)n Simple_repeat Simple_repeat 1 335 0 186 141 31 16 chr1 27123171 27123235 -215541118 + (TG)n Simple_repeat Simple_repeat 1 65 0 183 191 21 11 chr1 27123333 27123427 -215540926 + (TG)n Simple_repeat Simple_repeat 1 95 0 271 326 11 21 chr1 27124959 27125054 -215539299 - MIR3 SINE MIR -41 167 74 1980 93 0 7 chr1 27125506 27125775 -215538578 - AluSg SINE Alu -14 296 30 243 0 0 0 chr1 27125809 27125836 -215538517 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2182 107 0 16 chr1 27125852 27126162 -215538191 + AluSx SINE Alu 1 305 -7 1749 98 8 0 chr1 27127061 27127296 -215537057 - AluSg/x SINE Alu -8 302 66 2066 128 7 0 chr1 27127296 27127584 -215536769 - AluSx SINE Alu -21 291 1 2287 124 26 109 chr1 27127678 27127842 -215536511 + L1MA8 LINE L1 5621 5797 -494 1724 151 48 3 chr1 27127842 27128133 -215536220 + AluSx SINE Alu 1 304 -8 2287 124 26 109 chr1 27128133 27128147 -215536206 + L1MA8 LINE L1 5797 5811 -480 1866 172 13 0 chr1 27128147 27128455 -215535898 + AluJo SINE Alu 1 312 0 2287 124 26 109 chr1 27128455 27128647 -215535706 + L1MA8 LINE L1 5811 5924 -367 2423 66 3 0 chr1 27128647 27128952 -215535401 + AluSx SINE Alu 1 306 -6 2287 124 26 109 chr1 27128952 27129191 -215535162 + L1MA8 LINE L1 5924 6181 -110 30 0 0 0 chr1 27129326 27129356 -215534997 + AT_rich Low_complexity Low_complexity 1 30 0 388 309 125 0 chr1 27129402 27129538 -215534815 - MIR SINE MIR -57 205 53 798 251 90 9 chr1 27130213 27130424 -215533929 + MIR SINE MIR 35 262 0 466 297 130 54 chr1 27130568 27130807 -215533546 + L3 LINE CR1 1263 1519 -58 207 233 17 50 chr1 27130871 27130931 -215533422 - MER5A DNA MER1_type -99 90 33 206 342 26 0 chr1 27132061 27132137 -215532216 - MIR SINE MIR -20 242 165 368 299 107 17 chr1 27132594 27132771 -215531582 - MIR SINE MIR -3 205 9 250 313 135 0 chr1 27132849 27132945 -215531408 + MIR SINE MIR 32 140 -122 233 288 0 0 chr1 27133039 27133098 -215531255 + MIR SINE MIR 86 144 -64 413 304 69 12 chr1 27133673 27133884 -215530469 - MIR SINE MIR -3 259 34 417 284 108 14 chr1 27134246 27134394 -215529959 + MIR SINE MIR 44 205 -57 245 285 114 16 chr1 27134443 27134566 -215529787 - MIR SINE MIR -26 236 102 662 261 128 4 chr1 27134820 27135046 -215529307 + MIR SINE MIR 8 261 -1 300 302 17 26 chr1 27136767 27136883 -215527470 + MIR3 SINE MIR 69 183 -25 440 287 90 27 chr1 27137219 27137407 -215526946 + MIR SINE MIR 60 259 -3 224 379 45 23 chr1 27137706 27137838 -215526515 - MIR3 SINE MIR -38 170 36 528 278 101 29 chr1 27137860 27138100 -215526253 + L1ME4a LINE L1 5573 5826 -295 1150 104 0 0 chr1 27138103 27138257 -215526096 + AluSq SINE Alu 1 154 -159 257 298 48 77 chr1 27138270 27138374 -215525979 + MIR SINE MIR 106 206 -56 368 296 145 0 chr1 27138728 27138926 -215525427 + MIR SINE MIR 16 242 -20 653 217 23 0 chr1 27139171 27139477 -215524876 + GA-rich Low_complexity Low_complexity 1 313 0 419 186 0 8 chr1 27139494 27139612 -215524741 + GA-rich Low_complexity Low_complexity 1 117 0 259 364 42 0 chr1 27141103 27141221 -215523132 + MIR3 SINE MIR 83 205 -3 244 321 46 9 chr1 27141937 27142046 -215522307 + MIR SINE MIR 33 145 -117 201 294 59 0 chr1 27142302 27142353 -215522000 - MIR SINE MIR -110 152 99 419 225 90 107 chr1 27142687 27142865 -215521488 - MIR SINE MIR -57 205 31 185 303 81 10 chr1 27143611 27143710 -215520643 + MIR SINE MIR 18 123 -139 2157 112 3 0 chr1 27144248 27144533 -215519820 - AluSx SINE Alu -13 299 14 2069 150 0 3 chr1 27144568 27144862 -215519491 - AluSx SINE Alu -19 293 1 207 0 0 0 chr1 27145019 27145042 -215519311 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 249 283 87 22 chr1 27146477 27146569 -215517784 - MIR3 SINE MIR -27 181 84 186 219 0 24 chr1 27147408 27147449 -215516904 + MIR SINE MIR 107 146 -62 617 270 46 6 chr1 27147764 27147938 -215516415 + MIR SINE MIR 15 195 -67 194 317 126 77 chr1 27148350 27148596 -215515757 + L2 LINE L2 2920 3177 -95 602 228 67 22 chr1 27149101 27149281 -215515072 + L2 LINE L2 2013 2200 -1114 286 100 0 0 chr1 27149290 27149330 -215515023 + Alu SINE Alu 1 40 -259 849 252 54 8 chr1 27149356 27149598 -215514755 - MIR SINE MIR 0 262 10 710 251 18 66 chr1 27149677 27149875 -215514478 - MIR SINE MIR -50 212 26 1212 194 14 0 chr1 27149875 27150091 -215514262 - MER20 DNA MER1_type 0 219 1 710 251 18 66 chr1 27150091 27150110 -215514243 - MIR SINE MIR -236 26 8 621 297 159 43 chr1 27150609 27151372 -215512981 + L2 LINE L2 2400 3272 0 607 238 155 48 chr1 27151506 27151646 -215512707 + MIR SINE MIR 28 198 -64 2230 132 0 0 chr1 27151646 27151949 -215512404 - AluSx SINE Alu -9 303 1 607 238 155 48 chr1 27151949 27152014 -215512339 + MIR SINE MIR 198 255 -7 468 286 102 29 chr1 27152022 27152228 -215512125 + MIR SINE MIR 6 226 -36 446 219 124 15 chr1 27152251 27152388 -215511965 + L2 LINE L2 3162 3313 0 238 279 101 0 chr1 27152411 27152490 -215511863 + L2 LINE L2 3227 3313 0 3474 143 8 4 chr1 27152564 27153082 -215511271 + MLT2B1 LTR ERVL 1 520 0 381 274 5 22 chr1 27153091 27153213 -215511140 + MIR SINE MIR 98 216 -46 203 218 0 0 chr1 27153230 27153275 -215511078 + MIR SINE MIR 104 147 -63 260 148 25 37 chr1 27155611 27155692 -215508661 + (CGGG)n Simple_repeat Simple_repeat 3 82 0 207 114 0 0 chr1 27155712 27155747 -215508606 + (CGG)n Simple_repeat Simple_repeat 3 37 0 1129 149 101 71 chr1 27155781 27156347 -215508006 + MER52A LTR ERV1 5 665 -1090 38 108 0 0 chr1 27156356 27156513 -215507840 + GC_rich Low_complexity Low_complexity 1 157 0 29 0 0 0 chr1 27156954 27156983 -215507370 + GC_rich Low_complexity Low_complexity 1 29 0 266 252 224 9 chr1 27159888 27159995 -215504358 + MIR SINE MIR 17 146 -62 2204 108 6 22 chr1 27160521 27160837 -215503516 - AluSx SINE Alu -1 311 1 401 339 85 40 chr1 27160953 27161130 -215503223 - MER91A DNA MER1_type -11 185 1 212 246 143 56 chr1 27161143 27161269 -215503084 + MIR3 SINE MIR 49 185 -23 198 281 73 12 chr1 27161267 27161349 -215503004 + L2 LINE L2 3220 3306 -7 * 279 147 0 174 chr1 27163865 27163907 -215500446 - L1ME2 LINE L1 -9 6155 6142 2308 102 13 0 chr1 27163907 27164210 -215500143 - AluSx SINE Alu -5 307 1 279 147 0 174 chr1 27164210 27164276 -215500077 - L1ME2 LINE L1 -22 6142 6066 236 125 0 0 chr1 27164284 27164324 -215500029 - MER3 DNA MER1_type -159 50 11 2809 202 61 61 chr1 27164371 27164442 -215499911 - L1ME2 LINE L1 -184 5980 5910 1653 183 22 39 chr1 27164442 27164753 -215499600 + AluJo SINE Alu 1 306 -6 2809 202 61 61 chr1 27164753 27165257 -215499096 - L1ME2 LINE L1 -254 5910 5407 2520 84 0 0 chr1 27165257 27165566 -215498787 - AluY SINE Alu -2 309 1 2809 202 61 61 chr1 27165566 27166190 -215498163 - L1ME2 LINE L1 -757 5407 4784 1999 137 55 0 chr1 27166190 27166483 -215497870 - AluSx SINE Alu -3 309 1 2809 202 61 61 chr1 27166483 27166659 -215497694 - L1ME2 LINE L1 -1380 4784 4609 1608 173 3 50 chr1 27166659 27166960 -215497393 + AluJb SINE Alu 1 287 -25 2809 202 61 61 chr1 27166960 27167197 -215497156 - L1ME2 LINE L1 -1555 4609 4353 2373 110 0 0 chr1 27167207 27167516 -215496837 - AluSq SINE Alu -4 309 1 13668 175 34 25 chr1 27167525 27168354 -215495999 - L1PB3 LINE L1 -7 6863 6043 1969 116 58 4 chr1 27168354 27168629 -215495724 - AluSx SINE Alu -22 290 1 13668 175 34 25 chr1 27168629 27169856 -215494497 - L1PB3 LINE L1 -827 6043 4829 2100 126 0 10 chr1 27169856 27170176 -215494177 - AluSx SINE Alu 0 317 1 13668 175 34 25 chr1 27170176 27170724 -215493629 - L1PB3 LINE L1 -2041 4829 4288 1733 134 4 30 chr1 27170724 27170986 -215493367 - AluSx SINE Alu -57 255 1 13668 175 34 25 chr1 27170986 27171768 -215492585 - L1PB3 LINE L1 -2582 4288 3515 2379 102 3 0 chr1 27171768 27172073 -215492280 - AluSc SINE Alu -3 306 1 13668 175 34 25 chr1 27172073 27172898 -215491455 - L1PB3 LINE L1 -3355 3515 2589 2095 230 59 22 chr1 27172897 27173444 -215490909 - L1ME LINE L1 -1757 4323 3710 * 1939 130 3 11 chr1 27173444 27173758 -215490595 + AluSx SINE Alu 1 312 0 2095 230 59 22 chr1 27173758 27173910 -215490443 - L1ME LINE L1 -2370 3710 3565 665 210 8 0 chr1 27173939 27174063 -215490290 - FLAM_A SINE Alu -8 134 10 538 280 69 47 chr1 27174078 27174335 -215490018 - L1ME LINE L1 -2534 3546 3279 2217 116 3 35 chr1 27174335 27174653 -215489700 - AluSx SINE Alu 0 312 5 538 280 69 47 chr1 27174653 27174713 -215489640 - L1ME LINE L1 -2801 3279 3222 4904 52 17 2 chr1 27174762 27175778 -215488575 - MER11A LTR ERVK 0 1266 1 2283 120 3 0 chr1 27175781 27176089 -215488264 + AluSx SINE Alu 1 309 -3 236 160 0 0 chr1 27176101 27176151 -215488202 - L1ME LINE L1 -2912 3168 3119 22 0 0 0 chr1 27176159 27176181 -215488172 + AT_rich Low_complexity Low_complexity 1 22 0 3290 256 68 26 chr1 27176271 27178420 -215485933 - L1ME LINE L1 -3301 2779 527 484 268 21 49 chr1 27180439 27180581 -215483772 - MER5B DNA MER1_type -13 165 28 237 33 0 0 chr1 27182139 27182169 -215482184 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1991 123 0 53 chr1 27182177 27182479 -215481874 - AluSq SINE Alu -27 286 1 261 0 0 0 chr1 27182495 27182524 -215481829 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1458 94 0 11 chr1 27182524 27182715 -215481638 - AluSq SINE Alu -124 189 1 298 326 141 35 chr1 27183242 27183406 -215480947 - L2 LINE L2 -893 2421 2276 198 0 0 0 chr1 27183406 27183428 -215480925 + (TA)n Simple_repeat Simple_repeat 2 23 0 1889 136 26 13 chr1 27183428 27183730 -215480623 - AluJb SINE Alu -6 306 1 298 326 141 35 chr1 27183730 27183911 -215480442 - L2 LINE L2 -1037 2277 2038 2679 191 70 26 chr1 27185337 27185954 -215478399 - L1MB5 LINE L1 -6 6168 5525 223 330 130 9 chr1 27187130 27187245 -215477108 - MIR SINE MIR -114 148 20 2185 115 3 3 chr1 27188551 27188846 -215475507 - AluSx SINE Alu -17 295 1 288 277 270 7 chr1 27191577 27191725 -215472628 + MIR SINE MIR 76 262 0 1537 161 0 40 chr1 27191725 27191974 -215472379 - AluJb SINE Alu -73 239 1 1873 177 6 3 chr1 27191976 27192287 -215472066 - AluJb SINE Alu 0 312 1 756 217 48 14 chr1 27192752 27192959 -215471394 + MER20 DNA MER1_type 6 219 0 2430 92 0 0 chr1 27193550 27193853 -215470500 - AluSc SINE Alu -6 303 1 375 260 60 10 chr1 27194075 27194175 -215470178 + MIR3 SINE MIR 73 177 -31 2301 106 7 0 chr1 27195004 27195306 -215469047 - AluSx SINE Alu -8 304 1 2510 68 0 0 chr1 27195737 27196033 -215468320 - AluY SINE Alu -15 296 1 405 241 0 52 chr1 27197109 27197225 -215467128 - MIR SINE MIR -123 139 30 1770 168 0 14 chr1 27197366 27197663 -215466690 - AluJb SINE Alu -19 293 1 1971 209 126 10 chr1 27198628 27199028 -215465325 - MER63C DNA MER1_type -158 902 550 2240 98 4 0 chr1 27199028 27199305 -215465048 + AluSp SINE Alu 1 278 -35 2381 61 47 7 chr1 27199305 27199602 -215464751 - AluY SINE Alu -2 309 1 2110 132 0 0 chr1 27199612 27199899 -215464454 - AluJb SINE Alu -25 287 1 1971 209 126 10 chr1 27199899 27200065 -215464288 - MER63C DNA MER1_type -517 543 257 404 225 159 53 chr1 27200200 27200351 -215464002 - L2 LINE L2 0 3313 3147 359 210 180 78 chr1 27200999 27201166 -215463187 + L2 LINE L2 3130 3313 0 838 129 32 8 chr1 27201560 27201684 -215462669 + FLAM_C SINE Alu 3 129 -14 2050 84 9 100 chr1 27201688 27202009 -215462344 + AluSx SINE Alu 1 292 -20 203 0 0 36 chr1 27202010 27202025 -215462328 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 203 0 0 36 chr1 27202025 27202053 -215462300 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr1 27202109 27202138 -215462215 + AT_rich Low_complexity Low_complexity 1 29 0 201 298 53 0 chr1 27202159 27202216 -215462137 + L2 LINE L2 3188 3247 -25 1959 128 69 9 chr1 27202226 27202546 -215461807 - MER44D DNA MER2_type 0 609 1 22 0 0 0 chr1 27203169 27203191 -215461162 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 27204764 27204786 -215459567 + (T)n Simple_repeat Simple_repeat 1 22 0 2332 99 0 3 chr1 27206110 27206413 -215457940 + AluSx SINE Alu 1 302 -10 670 287 158 4 chr1 27207105 27207370 -215456983 + L2 LINE L2 3005 3310 -3 2547 64 0 10 chr1 27207455 27207766 -215456587 - AluY SINE Alu -3 308 1 582 257 29 38 chr1 27208175 27208390 -215455963 + MIR SINE MIR 41 254 -8 1577 181 0 59 chr1 27208396 27208699 -215455654 + AluJo SINE Alu 4 288 -24 204 187 33 132 chr1 27209567 27209658 -215454695 + MIR SINE MIR 1 82 -180 457 241 157 60 chr1 27209737 27209796 -215454557 + MIR SINE MIR 15 67 -195 1877 161 0 7 chr1 27209796 27210087 -215454266 - AluJb SINE Alu -23 289 1 457 241 157 60 chr1 27210087 27210243 -215454110 + MIR SINE MIR 67 251 -11 208 306 156 69 chr1 27210311 27210471 -215453882 - L2 LINE L2 -36 3236 3063 1557 162 101 85 chr1 27210611 27210782 -215453571 - MLT1D LTR MaLR 0 505 338 3106 158 10 57 chr1 27210782 27211363 -215452990 - MLT2B3 LTR ERVL 0 554 1 1557 162 101 85 chr1 27211363 27211685 -215452668 - MLT1D LTR MaLR -167 338 4 209 344 143 11 chr1 27211774 27212123 -215452230 - L2 LINE L2 -538 2776 2382 646 257 214 0 chr1 27212259 27212465 -215451888 + MIR SINE MIR 2 251 -11 521 208 73 25 chr1 27212455 27212596 -215451757 - MIR SINE MIR -64 144 20 * 192 330 45 11 chr1 27212605 27212693 -215451660 + MIR SINE MIR 161 251 -11 197 261 65 65 chr1 27212708 27212800 -215451553 + MIR SINE MIR 121 212 -50 745 306 102 25 chr1 27213251 27213921 -215450432 - L2 LINE L2 -2 3270 2545 4667 79 8 21 chr1 27213998 27214656 -215449697 - L1PB2 LINE L1 -3 6148 5500 707 240 69 6 chr1 27214665 27214840 -215449513 - MIR SINE MIR -14 248 63 294 238 211 27 chr1 27214851 27214998 -215449355 - MER5A DNA MER1_type -7 182 9 255 61 0 0 chr1 27216320 27216353 -215448000 + (CA)n Simple_repeat Simple_repeat 2 34 0 183 266 84 84 chr1 27216550 27216693 -215447660 + MIR3 SINE MIR 66 208 0 243 0 0 0 chr1 27216755 27216782 -215447571 + (T)n Simple_repeat Simple_repeat 1 27 0 605 234 157 4 chr1 27216922 27217170 -215447183 - L1ME4a LINE L1 -24 6097 5812 529 294 107 10 chr1 27217451 27217740 -215446613 + L1ME4a LINE L1 5579 5895 -226 333 89 11 56 chr1 27217880 27217970 -215446383 + (GA)n Simple_repeat Simple_repeat 2 87 0 440 121 25 242 chr1 27218485 27218766 -215445587 - L1MC4 LINE L1 -16 8026 7807 251 111 0 22 chr1 27218815 27218860 -215445493 + Alu SINE Alu 259 302 -6 255 170 0 0 chr1 27218860 27218907 -215445446 + (TA)n Simple_repeat Simple_repeat 1 47 0 3295 165 25 40 chr1 27218907 27218974 -215445379 - L1MB7 LINE L1 -25 6159 6092 2271 114 0 0 chr1 27218974 27219271 -215445082 - AluSx SINE Alu -15 297 1 3295 165 25 40 chr1 27219271 27219729 -215444624 - L1MB7 LINE L1 -92 6092 5645 2176 174 147 58 chr1 27219729 27219852 -215444501 - MER68 LTR ERV1 0 562 451 2077 128 3 16 chr1 27219852 27220165 -215444188 + AluSp SINE Alu 5 313 0 2176 174 147 58 chr1 27220165 27220557 -215443796 - MER68 LTR ERV1 -111 451 1 3295 165 25 40 chr1 27220557 27220746 -215443607 - L1MB7 LINE L1 -539 5645 5455 469 365 75 56 chr1 27220749 27221305 -215443048 + L3 LINE CR1 262 828 -749 273 279 132 23 chr1 27221553 27221664 -215442689 + L3 LINE CR1 1346 1474 -103 2340 117 0 0 chr1 27221664 27221962 -215442391 + AluSx SINE Alu 1 298 -14 273 279 132 23 chr1 27221962 27221979 -215442374 + L3 LINE CR1 1474 1488 -89 245 208 69 69 chr1 27222323 27222395 -215441958 - L2 LINE L2 -8 3305 3234 203 253 110 34 chr1 27222487 27222633 -215441720 - L2 LINE L2 -206 3066 2910 320 250 170 0 chr1 27223364 27223476 -215440877 + MIR3 SINE MIR 33 163 -45 978 129 76 0 chr1 27223770 27223941 -215440412 + MER5A DNA MER1_type 3 186 -3 229 223 55 49 chr1 27224147 27224248 -215440105 - MIR SINE MIR -102 106 8 242 344 73 26 chr1 27224620 27224771 -215439582 - L2 LINE L2 -38 3234 3077 374 321 58 0 chr1 27224832 27224969 -215439384 + MIR SINE MIR 29 173 -89 282 275 55 11 chr1 27225001 27225092 -215439261 - L2 LINE L2 -188 3084 2990 687 232 0 0 chr1 27225903 27226045 -215438308 + FLAM_A SINE Alu 1 142 0 552 241 137 30 chr1 27226835 27227105 -215437248 - L1ME4a LINE L1 -215 5906 5608 365 309 38 1 chr1 27227537 27227672 -215436681 + MIR SINE MIR 4 134 -74 229 299 0 15 chr1 27228018 27228085 -215436268 - L2 LINE L2 -31 3241 3176 384 274 111 7 chr1 27228199 27228334 -215436019 + MIR SINE MIR 13 161 -101 2395 93 0 0 chr1 27229197 27229498 -215434855 - AluSg SINE Alu -8 302 2 206 288 15 15 chr1 27229569 27229635 -215434718 + MIR SINE MIR 20 85 -177 227 279 47 0 chr1 27229663 27229749 -215434604 + MIR SINE MIR 173 262 0 191 301 36 12 chr1 27229842 27229925 -215434428 + MIR SINE MIR 111 195 -67 2176 127 13 0 chr1 27229943 27230251 -215434102 + AluSx SINE Alu 1 312 0 964 273 41 0 chr1 27230254 27230474 -215433879 + MIR SINE MIR 28 256 -6 644 256 36 10 chr1 27230899 27231094 -215433259 - MIR3 SINE MIR -4 204 5 620 157 128 0 chr1 27231320 27231422 -215432931 - FLAM_C SINE Alu -18 115 1 271 287 53 32 chr1 27231445 27231539 -215432814 - MIR SINE MIR -80 182 87 2303 138 28 35 chr1 27231875 27232256 -215432097 - Tigger2a DNA MER2_type -2274 434 55 2100 134 3 7 chr1 27232256 27232555 -215431798 + AluSx SINE Alu 1 298 -14 2303 138 28 35 chr1 27232555 27232602 -215431751 - Tigger2a DNA MER2_type -2653 55 9 820 266 46 18 chr1 27232631 27232882 -215431471 + MIR SINE MIR 1 256 -6 269 192 19 0 chr1 27232942 27232994 -215431359 + L2 LINE L2 3220 3272 0 549 219 31 23 chr1 27233744 27233872 -215430481 + MIR SINE MIR 29 157 -105 273 240 164 0 chr1 27234683 27234787 -215429566 + MIR SINE MIR 32 152 -56 1009 179 44 88 chr1 27235341 27235538 -215428815 - L1ME3 LINE L1 -1 6161 5980 2067 142 3 19 chr1 27235538 27235855 -215428498 - AluJo SINE Alu 0 312 1 1009 179 44 88 chr1 27235855 27235954 -215428399 - L1ME3 LINE L1 -182 5980 5878 2747 135 7 52 chr1 27236053 27236592 -215427761 - L1MB8 LINE L1 -141 6037 5523 816 254 25 8 chr1 27236589 27236825 -215427528 - L1ME3 LINE L1 -465 5705 5466 * 433 256 83 43 chr1 27237168 27237339 -215427014 + MIR SINE MIR 12 146 -62 343 307 77 91 chr1 27237360 27237578 -215426775 - L2 LINE L2 -21 3251 3031 2254 108 7 0 chr1 27237578 27237873 -215426480 + AluSg SINE Alu 1 297 -13 343 307 77 91 chr1 27237873 27237933 -215426420 - L2 LINE L2 -241 3031 2972 2269 114 23 0 chr1 27237933 27238239 -215426114 + AluSp SINE Alu 1 313 0 343 307 77 91 chr1 27238239 27238376 -215425977 - L2 LINE L2 -300 2972 2841 581 210 210 9 chr1 27239862 27240091 -215424262 - ORSL DNA AcHobo 0 275 1 265 344 133 7 chr1 27240287 27240438 -215423915 - MIR SINE MIR -71 191 22 2160 131 0 0 chr1 27240691 27240996 -215423357 + AluSx SINE Alu 6 310 -2 783 211 96 24 chr1 27241476 27241684 -215422669 + MIR SINE MIR 13 235 -27 258 263 68 51 chr1 27241740 27241858 -215422495 + MIR3 SINE MIR 35 154 -54 423 338 7 19 chr1 27241889 27242043 -215422310 - MER5B DNA MER1_type -24 154 3 2413 97 3 0 chr1 27242308 27242607 -215421746 + AluSp SINE Alu 1 300 -13 308 336 31 44 chr1 27244195 27244516 -215419837 - L1ME4a LINE L1 -180 5941 5625 744 238 76 24 chr1 27244516 27244572 -215419781 - MIR SINE MIR -10 252 200 1664 193 11 0 chr1 27244572 27244873 -215419480 + AluJo SINE Alu 1 304 0 744 238 76 24 chr1 27244873 27245024 -215419329 - MIR SINE MIR -62 200 32 3852 131 11 7 chr1 27246901 27247511 -215416842 - MER41B LTR ERV1 0 635 23 2242 107 10 0 chr1 27247511 27247809 -215416544 + AluSq SINE Alu 1 301 -12 239 216 20 0 chr1 27248270 27248321 -215416032 + L2 LINE L2 3262 3313 0 225 0 0 0 chr1 27248625 27248650 -215415703 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 2454 92 0 0 chr1 27248651 27248954 -215415399 - AluSq SINE Alu -10 303 1 538 274 101 10 chr1 27249086 27249294 -215415059 + MIR SINE MIR 36 262 0 271 260 138 8 chr1 27249375 27249498 -215414855 - MIR SINE MIR 0 262 124 188 324 59 0 chr1 27249799 27249867 -215414486 + MIR3 SINE MIR 85 156 -52 1174 267 71 2 chr1 27249870 27250280 -215414073 - MLT1H LTR MaLR 0 549 8 180 191 106 0 chr1 27250498 27250545 -215413808 - L2 LINE L2 -3 3310 3259 232 264 69 0 chr1 27250989 27251061 -215413292 + L2 LINE L2 3196 3272 0 340 169 26 169 chr1 27251930 27252084 -215412269 - MIR SINE MIR -50 212 81 395 285 111 17 chr1 27252177 27252349 -215412004 - MIR SINE MIR -44 218 31 702 297 93 41 chr1 27253806 27254342 -215410011 - MLT1K LTR MaLR 0 588 25 238 311 85 28 chr1 27254377 27254483 -215409870 - L2 LINE L2 0 3272 3161 214 125 0 0 chr1 27254544 27254576 -215409777 - L2 LINE L2 -20 3252 3221 1991 201 64 10 chr1 27254708 27255191 -215409162 - MLT1J LTR MaLR -2 509 1 1568 177 76 11 chr1 27255246 27255523 -215408830 - AluJb SINE Alu -17 295 1 2128 229 78 31 chr1 27255629 27256137 -215408216 - L1ME1 LINE L1 -33 6133 5650 1831 160 0 39 chr1 27256137 27256443 -215407910 + AluJb SINE Alu 1 294 -18 2128 229 78 31 chr1 27256443 27256478 -215407875 - L1ME1 LINE L1 -516 5650 5618 2287 85 41 0 chr1 27256478 27256772 -215407581 - AluSp SINE Alu -7 306 1 2128 229 78 31 chr1 27256772 27256908 -215407445 - L1ME1 LINE L1 -548 5618 5421 243 0 0 0 chr1 27256908 27256935 -215407418 + (CA)n Simple_repeat Simple_repeat 2 28 0 1108 267 54 14 chr1 27256938 27257309 -215407044 - HAL1 LINE L1 -299 2208 1823 3646 206 63 72 chr1 27257337 27257960 -215406393 - L1MB7 LINE L1 -1 6183 5556 342 0 0 0 chr1 27257960 27257998 -215406355 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2188 99 0 0 chr1 27257998 27258281 -215406072 - AluSq SINE Alu -30 283 1 1775 168 10 10 chr1 27258288 27258636 -215405717 - AluJo SINE Alu 0 312 1 3646 206 63 72 chr1 27258636 27258689 -215405664 - L1MB7 LINE L1 -633 5551 5499 216 0 0 0 chr1 27258689 27258713 -215405640 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1955 149 0 0 chr1 27258717 27258992 -215405361 - AluSx SINE Alu -37 275 1 3646 206 63 72 chr1 27258992 27259114 -215405239 - L1MB7 LINE L1 -688 5496 5374 2308 121 3 0 chr1 27259114 27259419 -215404934 - AluSx SINE Alu -6 306 1 3646 206 63 72 chr1 27259419 27260073 -215404280 - L1MB7 LINE L1 -810 5374 4716 497 217 28 0 chr1 27260073 27260179 -215404174 - FLAM_C SINE Alu -18 125 17 3646 206 63 72 chr1 27260179 27260801 -215403552 - L1MB7 LINE L1 -1468 4716 4012 * 3896 235 86 82 chr1 27260795 27262568 -215401785 - HAL1 LINE L1 -721 1786 8 196 282 39 87 chr1 27262593 27262696 -215401657 + MIR SINE MIR 110 207 -55 2339 90 10 0 chr1 27262935 27263234 -215401119 - AluSq SINE Alu -11 302 1 426 288 196 22 chr1 27263364 27263593 -215400760 - MLT1H LTR MaLR -278 271 3 442 311 174 13 chr1 27264163 27264468 -215399885 - L2 LINE L2 -2 3270 2917 449 281 102 6 chr1 27265512 27265671 -215398682 + MIR SINE MIR 20 193 -68 1660 213 0 3 chr1 27265682 27265982 -215398371 + AluJb SINE Alu 1 299 -13 192 104 0 125 chr1 27266077 27266125 -215398228 + MIR SINE MIR 76 117 -145 715 274 58 0 chr1 27267370 27267560 -215396793 - MLT1J1 LTR MaLR -8 438 238 408 263 102 0 chr1 27267563 27267681 -215396672 - MLT1J2 LTR MaLR -255 195 66 318 231 11 11 chr1 27268132 27268223 -215396130 + L2 LINE L2 2919 3009 -263 382 239 54 0 chr1 27268273 27268365 -215395988 - MIR SINE MIR -8 254 158 426 133 0 0 chr1 27268372 27268447 -215395906 - Alu SINE Alu -2 310 236 2128 100 0 4 chr1 27268447 27268718 -215395635 - AluSc SINE Alu -39 270 1 276 296 74 9 chr1 27268724 27268832 -215395521 - MIR SINE MIR -63 145 31 269 335 49 18 chr1 27269713 27269877 -215394476 - MIR SINE MIR -34 228 60 1946 129 28 3 chr1 27269943 27270230 -215394123 + AluJb SINE Alu 1 294 -18 420 20 0 0 chr1 27270232 27270281 -215394072 + (CAT)n Simple_repeat Simple_repeat 2 50 0 374 326 16 8 chr1 27270381 27270510 -215393843 - MIR SINE MIR -112 150 21 198 362 49 38 chr1 27270789 27270974 -215393379 - L2 LINE L2 -5 3267 3081 450 309 75 15 chr1 27271242 27271443 -215392910 + MIR SINE MIR 6 218 -44 288 254 32 0 chr1 27272611 27272674 -215391679 + MIR SINE MIR 88 152 -110 2547 71 0 0 chr1 27272698 27273007 -215391346 - AluY SINE Alu -2 309 1 2181 144 0 0 chr1 27273025 27273337 -215391016 - AluSx SINE Alu 0 312 1 241 301 6 60 chr1 27273789 27273972 -215390381 - L2 LINE L2 -185 3087 2915 1919 137 0 20 chr1 27274039 27274331 -215390022 + AluSx SINE Alu 1 286 -26 330 348 0 0 chr1 27274343 27274432 -215389921 - L1MC4 LINE L1 -1340 6702 6614 * 383 320 0 0 chr1 27274378 27274481 -215389872 + L1MC4 LINE L1 6614 6716 -1326 424 272 76 76 chr1 27275324 27275427 -215388926 - MIR SINE MIR -16 246 144 1946 171 0 0 chr1 27275427 27275731 -215388622 - AluJb SINE Alu -4 308 5 424 272 76 76 chr1 27275731 27275851 -215388502 - MIR SINE MIR -117 145 23 269 230 54 0 chr1 27275904 27275978 -215388375 + MIR SINE MIR 50 127 -81 411 361 65 36 chr1 27276438 27276884 -215387469 - L2 LINE L2 0 3272 2814 1400 246 67 80 chr1 27277359 27277788 -215386565 - MLT1G1 LTR MaLR -2 593 173 1631 133 118 19 chr1 27277788 27278059 -215386294 + AluJo SINE Alu 1 298 -14 1400 246 67 80 chr1 27278059 27278230 -215386123 - MLT1G1 LTR MaLR -422 173 1 1044 236 78 63 chr1 27279133 27279328 -215385025 - L2 LINE L2 -409 2905 2714 312 27 0 0 chr1 27279328 27279365 -215384988 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2472 50 0 0 chr1 27279365 27279644 -215384709 - AluY SINE Alu -32 279 1 1044 236 78 63 chr1 27279644 27280065 -215384288 - L2 LINE L2 -599 2715 2279 1038 82 0 0 chr1 27280066 27280188 -215384165 - AluSg SINE Alu -188 122 1 557 228 67 22 chr1 27280197 27280377 -215383976 - L2 LINE L2 -1114 2200 2013 589 270 46 6 chr1 27281539 27281713 -215382640 - MIR SINE MIR -67 195 15 227 283 87 22 chr1 27282908 27283000 -215381353 + MIR3 SINE MIR 84 181 -27 227 79 26 0 chr1 27285480 27285518 -215378835 + (TA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr1 27285521 27285552 -215378801 + AT_rich Low_complexity Low_complexity 1 31 0 976 210 26 22 chr1 27487557 27487828 -215176525 + L1M4 LINE L1 4966 5237 -909 283 100 0 0 chr1 27487938 27487978 -215176375 + Alu SINE Alu 7 46 -262 21 0 0 0 chr1 27488010 27488031 -215176322 + AT_rich Low_complexity Low_complexity 1 21 0 241 287 0 29 chr1 27488982 27489118 -215175235 + (CGGGG)n Simple_repeat Simple_repeat 4 135 0 1685 124 34 34 chr1 27489906 27490197 -215174156 + AluSx SINE Alu 18 308 -4 1423 151 77 18 chr1 27490207 27490479 -215173874 + AluJo SINE Alu 2 289 -13 2198 99 7 0 chr1 27490900 27491204 -215173149 - AluSp SINE Alu -7 306 1 2215 121 0 0 chr1 27491344 27491650 -215172703 - AluSx SINE Alu -6 306 1 685 225 0 0 chr1 27491659 27491788 -215172565 - FLAM_A SINE Alu -1 141 13 21 0 0 0 chr1 27491796 27491817 -215172536 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 27491909 27491939 -215172414 + AT_rich Low_complexity Low_complexity 1 30 0 1712 118 4 0 chr1 27491988 27492233 -215172120 + AluSg SINE Alu 1 246 -64 21 36 0 0 chr1 27492670 27492698 -215171655 + GC_rich Low_complexity Low_complexity 1 28 0 351 267 100 8 chr1 27494927 27495047 -215169306 - MIR SINE MIR -12 250 120 2071 84 0 58 chr1 27495756 27496065 -215168288 - AluSc SINE Alu -18 291 1 1682 128 25 4 chr1 27496093 27496374 -215167979 + AluSx SINE Alu 1 287 -25 763 179 0 0 chr1 27496814 27496937 -215167416 - FRAM SINE Alu -30 146 24 1179 234 89 3 chr1 27496939 27497221 -215167132 + MER97c DNA MER1_type? 230 535 -555 310 210 121 9 chr1 27497201 27497222 -215167131 + MER97a DNA MER1_type? 781 798 -96 * 2355 90 0 0 chr1 27497222 27497532 -215166821 + AluY SINE Alu 1 310 -1 310 210 121 9 chr1 27497532 27497658 -215166695 + MER97a DNA MER1_type? 798 891 -3 1215 159 56 21 chr1 27497723 27497884 -215166469 - AluJo SINE Alu -8 304 131 2131 94 0 23 chr1 27497884 27498183 -215166170 - AluSg SINE Alu -18 292 1 1215 159 56 21 chr1 27498183 27498254 -215166099 - AluJo SINE Alu -181 131 64 1804 150 20 0 chr1 27498257 27498551 -215165802 - AluJb SINE Alu -12 300 1 387 252 17 34 chr1 27498554 27498673 -215165680 - MER96B DNA MER1_type? -300 117 1 477 213 0 90 chr1 27498673 27498752 -215165601 - MIR SINE MIR -70 192 126 2138 93 3 17 chr1 27498752 27499054 -215165299 + AluSc SINE Alu 1 298 -11 477 213 0 90 chr1 27499054 27499096 -215165257 - MIR SINE MIR -136 126 82 889 122 15 0 chr1 27499102 27499233 -215165120 - AluSq/x SINE Alu -179 133 1 2275 99 3 0 chr1 27499243 27499547 -215164806 - AluSp SINE Alu -8 305 1 3284 98 14 8 chr1 27499547 27500037 -215164316 - Tigger1 DNA MER2_type -939 1479 987 378 42 0 0 chr1 27500037 27500085 -215164268 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 399 21 0 0 chr1 27500084 27500132 -215164221 + (GA)n Simple_repeat Simple_repeat 1 48 0 242 161 18 89 chr1 27500313 27500425 -215163928 + C-rich Low_complexity Low_complexity 5 108 0 333 268 31 41 chr1 27500826 27500923 -215163430 + L1MC4 LINE L1 6605 6700 -1342 829 120 0 0 chr1 27500936 27501053 -215163300 - FLAM_C SINE Alu -16 117 1 314 269 43 0 chr1 27501475 27501568 -215162785 - MIR SINE MIR -58 150 54 2077 62 22 4 chr1 27501580 27501853 -215162500 + AluY SINE Alu 17 294 -17 434 285 54 8 chr1 27501942 27502072 -215162281 + MIR SINE MIR 18 153 -109 1512 143 57 57 chr1 27502133 27502296 -215162057 - AluJo SINE Alu -12 300 135 2047 134 0 3 chr1 27502296 27502594 -215161759 - AluSc SINE Alu -12 297 1 1512 143 57 57 chr1 27502594 27502730 -215161623 - AluJo SINE Alu -176 136 1 1675 92 3 176 chr1 27502791 27502972 -215161381 - AluSc SINE Alu 0 299 215 2607 10 7 0 chr1 27502972 27503267 -215161086 - AluY SINE Alu -14 297 1 1675 92 3 176 chr1 27503267 27503451 -215160902 - AluSc SINE Alu -84 215 1 835 137 8 0 chr1 27503453 27503584 -215160769 - FAM SINE Alu -9 40 1 196 250 67 33 chr1 27503594 27503654 -215160699 - L2 LINE L2 -37 3276 3215 802 200 0 0 chr1 27503663 27503808 -215160545 + FRAM SINE Alu 21 165 -11 181 261 34 57 chr1 27503809 27503897 -215160456 - L2 LINE L2 -79 3234 3149 * 611 214 18 127 chr1 27503872 27504069 -215160284 - MIR SINE MIR 0 262 92 2031 88 3 72 chr1 27504069 27504389 -215159964 + AluSq SINE Alu 1 298 -15 611 214 18 127 chr1 27504389 27504420 -215159933 - MIR SINE MIR -170 92 59 267 232 43 51 chr1 27504595 27504733 -215159620 - L1MC4a LINE L1 -1898 5910 5774 320 222 42 0 chr1 27504819 27504891 -215159462 + MIR SINE MIR 80 154 -108 1932 86 10 51 chr1 27504903 27505220 -215159133 + AluY SINE Alu 2 306 0 189 195 0 0 chr1 27505342 27505383 -215158970 - L2 LINE L2 0 3313 3273 300 266 11 43 chr1 27506101 27506181 -215158172 + L3 LINE CR1 869 947 -630 2175 126 0 0 chr1 27506181 27506491 -215157862 + AluSx SINE Alu 2 311 -1 300 266 11 43 chr1 27506491 27506504 -215157849 + L3 LINE CR1 947 959 -618 226 337 0 47 chr1 27506769 27506855 -215157498 - L2 LINE L2 -60 3253 3172 335 332 215 0 chr1 27506898 27507112 -215157241 + L3 LINE CR1 1248 1507 -70 699 259 56 5 chr1 27507148 27507345 -215157008 - MIR SINE MIR -54 208 2 525 343 91 5 chr1 27507978 27508176 -215156177 - MIR SINE MIR -1 261 47 304 208 150 25 chr1 27508454 27508574 -215155779 - MIR SINE MIR -39 223 89 2142 102 0 0 chr1 27508582 27508876 -215155477 - AluSq SINE Alu -3 310 17 2320 80 3 0 chr1 27509102 27509404 -215154949 - AluSp SINE Alu -10 303 1 267 253 91 0 chr1 27511309 27511408 -215152945 + MIR SINE MIR 46 153 -109 2290 79 0 0 chr1 27512027 27512318 -215152035 - AluY SINE Alu -20 291 1 2120 90 3 27 chr1 27512704 27513004 -215151349 - AluY SINE Alu -2 309 17 1154 102 24 12 chr1 27515428 27515595 -215148758 + AluSx SINE Alu 1 169 -143 2017 138 3 10 chr1 27516056 27516367 -215147986 + AluSx SINE Alu 1 309 -3 1848 136 17 11 chr1 27516833 27517120 -215147233 + AluSx SINE Alu 5 293 -19 552 326 53 5 chr1 27517431 27517621 -215146732 - MIR SINE MIR -56 206 8 221 227 0 0 chr1 27517708 27517752 -215146601 + L2 LINE L2 3225 3268 -4 437 276 45 95 chr1 27518490 27518656 -215145697 + MIR SINE MIR 32 186 -76 2228 84 7 13 chr1 27518656 27518964 -215145389 + AluSx SINE Alu 1 306 -6 437 276 45 95 chr1 27518964 27519018 -215145335 + MIR SINE MIR 186 241 -21 239 366 79 30 chr1 27518994 27519196 -215145157 - L2 LINE L2 -27 3245 3034 * 312 351 61 8 chr1 27519248 27519379 -215144974 - MIR SINE MIR -66 196 59 234 282 42 14 chr1 27519400 27519471 -215144882 - L2 LINE L2 -229 3043 2971 294 295 4 24 chr1 27519883 27519988 -215144365 - MIR3 SINE MIR -40 168 86 338 277 30 0 chr1 27520365 27520466 -215143887 + MIR SINE MIR 79 182 -80 335 296 118 13 chr1 27520503 27520676 -215143677 + MIR SINE MIR 10 198 -62 368 266 133 0 chr1 27521348 27521461 -215142892 - MIR SINE MIR -21 241 114 374 320 45 36 chr1 27522191 27522438 -215141915 + MIR SINE MIR 14 262 0 396 246 18 35 chr1 27522999 27523113 -215141240 - MIR3 SINE MIR -27 181 70 322 330 23 28 chr1 27523139 27523315 -215141038 + L2 LINE L2 2917 3091 -181 1037 160 0 18 chr1 27523354 27523523 -215140830 - AluJo/FRAM SINE Alu 0 302 137 1181 128 25 91 chr1 27523523 27523582 -215140771 + AluJo SINE Alu 72 133 -179 2306 76 3 0 chr1 27523582 27523873 -215140480 - AluSp SINE Alu -21 292 1 1181 128 25 91 chr1 27523873 27524056 -215140297 + AluJo SINE Alu 133 298 -14 1974 123 3 3 chr1 27524057 27524350 -215140003 + AluSx SINE Alu 2 294 -18 1867 116 14 14 chr1 27525031 27525144 -215139209 + AluSx SINE Alu 24 136 -176 2342 76 3 0 chr1 27525144 27525445 -215138908 + AluSq SINE Alu 1 302 -11 1867 116 14 14 chr1 27525445 27525616 -215138737 + AluSx SINE Alu 135 308 -4 352 111 0 0 chr1 27525617 27525671 -215138682 - Tigger1 DNA MER2_type -1493 925 872 1862 147 3 10 chr1 27525671 27525964 -215138389 - AluSx SINE Alu -21 291 1 871 144 14 0 chr1 27525964 27526103 -215138250 - AluJo SINE Alu -171 141 1 3248 113 66 92 chr1 27526103 27526479 -215137874 - Tigger1 DNA MER2_type -1765 653 268 2135 92 0 3 chr1 27526479 27526761 -215137592 - AluSg SINE Alu -29 281 1 3248 113 66 92 chr1 27526761 27527010 -215137343 - Tigger1 DNA MER2_type -2150 268 45 1463 201 7 14 chr1 27527010 27527142 -215137211 + AluJo SINE Alu 5 136 -176 2029 119 7 13 chr1 27527142 27527477 -215136876 + AluSp SINE Alu 1 313 0 1463 201 7 14 chr1 27527477 27527633 -215136720 + AluJo SINE Alu 136 291 -21 3248 113 66 92 chr1 27527633 27527676 -215136677 - Tigger1 DNA MER2_type -2373 45 2 27 62 0 0 chr1 27527734 27527782 -215136571 + AT_rich Low_complexity Low_complexity 1 48 0 2790 16 0 0 chr1 27527790 27528103 -215136250 + AluYb8 SINE Alu 1 313 -5 440 250 97 61 chr1 27528109 27528305 -215136048 + MER102a DNA MER1_type 127 329 -1 185 323 52 10 chr1 27528305 27528401 -215135952 - MIR SINE MIR -57 151 52 2423 63 0 0 chr1 27528425 27528724 -215135629 - AluY SINE Alu -12 299 1 1984 91 60 14 chr1 27528727 27528875 -215135478 - AluSx SINE Alu -14 298 158 2496 47 0 10 chr1 27528875 27529176 -215135177 - AluY SINE Alu -13 298 1 1984 91 60 14 chr1 27529176 27529312 -215135041 - AluSx SINE Alu -154 158 1 350 328 45 7 chr1 27529386 27529599 -215134754 - MIR SINE MIR -5 257 39 290 176 129 35 chr1 27529933 27530018 -215134335 - MIR SINE MIR -98 164 72 262 203 42 208 chr1 27530124 27530454 -215133899 + L1MC5 LINE L1 7037 7282 -679 1675 126 73 40 chr1 27530454 27530597 -215133756 + AluJb SINE Alu 1 138 -174 2216 93 0 0 chr1 27530597 27530886 -215133467 + AluSg SINE Alu 1 289 -21 1675 126 73 40 chr1 27530886 27531043 -215133310 + AluJb SINE Alu 138 311 -1 262 203 42 208 chr1 27531043 27531140 -215133213 + L1MC5 LINE L1 7282 7393 -568 1944 118 36 0 chr1 27531146 27531426 -215132927 + AluSx SINE Alu 3 292 -20 2228 88 0 10 chr1 27531508 27531805 -215132548 + AluSg SINE Alu 1 294 -16 589 223 37 32 chr1 27531806 27531994 -215132359 + L1MC5 LINE L1 7388 7576 -385 1843 116 0 4 chr1 27532015 27532282 -215132071 + AluSg SINE Alu 1 266 -44 1427 170 147 8 chr1 27532433 27532698 -215131655 - AluJb SINE Alu 0 302 1 611 256 64 10 chr1 27533134 27533337 -215131016 - L2 LINE L2 -1 3312 3099 440 291 262 12 chr1 27533347 27533690 -215130663 - L2 LINE L2 -370 2944 2516 416 326 78 54 chr1 27533691 27533883 -215130470 + L1MC4a LINE L1 6223 6424 -1384 2366 77 3 0 chr1 27533883 27534183 -215130170 - AluSp SINE Alu -12 301 1 416 326 78 54 chr1 27534183 27534248 -215130105 + L1MC4a LINE L1 6424 6486 -1322 2371 93 23 0 chr1 27534370 27534672 -215129681 - AluSx SINE Alu -3 309 1 230 288 11 109 chr1 27534673 27534857 -215129496 - MIR SINE MIR -1 261 96 198 103 0 0 chr1 27535725 27535754 -215128599 + (TATG)n Simple_repeat Simple_repeat 4 32 0 465 137 0 0 chr1 27535755 27535828 -215128525 - FLAM_A SINE Alu -27 115 43 650 254 26 48 chr1 27535848 27536076 -215128277 + MIR SINE MIR 40 262 0 208 276 61 41 chr1 27536406 27536504 -215127849 + L3b LINE CR1 1294 1393 -190 313 204 80 0 chr1 27537201 27537289 -215127064 - MIR SINE MIR -61 201 107 200 281 35 0 chr1 27537941 27537998 -215126355 + MIR SINE MIR 154 212 -50 467 273 102 32 chr1 27538824 27539011 -215125342 - MIR SINE MIR -29 233 34 739 168 22 0 chr1 27540690 27540827 -215123526 - FLAM_C SINE Alu -3 140 1 1558 94 12 94 chr1 27542914 27543027 -215121326 - AluSx SINE Alu -79 233 112 2260 108 3 3 chr1 27543027 27543324 -215121029 - AluSp SINE Alu -16 297 1 2391 80 3 7 chr1 27543326 27543627 -215120726 - AluSc SINE Alu -9 300 1 1558 94 12 94 chr1 27543627 27543764 -215120589 - AluSx SINE Alu -201 111 1 268 331 59 7 chr1 27543833 27543969 -215120384 - L2 LINE L2 -127 3145 3003 29 0 0 0 chr1 27544000 27544029 -215120324 + AT_rich Low_complexity Low_complexity 1 29 0 2385 93 3 0 chr1 27545253 27545554 -215118799 + AluSc SINE Alu 1 302 -7 2362 81 0 31 chr1 27545612 27545935 -215118418 - AluSq SINE Alu 0 313 1 907 261 174 9 chr1 27545942 27546379 -215117974 - L1MC4a LINE L1 -1631 6177 5669 468 273 24 67 chr1 27547010 27547175 -215117178 + MIR SINE MIR 29 186 -76 358 323 69 8 chr1 27547513 27547643 -215116710 + MIR SINE MIR 13 150 -112 237 227 106 0 chr1 27547920 27547986 -215116367 + MIR3 SINE MIR 112 184 -24 221 250 0 3 chr1 27549040 27549102 -215115251 + MIR SINE MIR 10 70 -138 258 180 0 0 chr1 27549113 27549163 -215115190 + L2 LINE L2 3262 3311 -2 374 275 144 18 chr1 27549164 27549331 -215115022 + MIR SINE MIR 69 256 -6 218 310 0 13 chr1 27549491 27549587 -215114766 + MIR SINE MIR 50 143 -87 570 114 0 0 chr1 27550896 27550984 -215113369 + (TCCCC)n Simple_repeat Simple_repeat 4 91 0 1965 82 0 0 chr1 27550984 27551216 -215113137 - AluSx SINE Alu -25 287 56 265 257 274 11 chr1 27551339 27551518 -215112835 - L2 LINE L2 -219 3053 2828 553 209 20 85 chr1 27552444 27552507 -215111846 + MIR SINE MIR 20 86 -176 2037 123 3 43 chr1 27552507 27552807 -215111546 - AluSx SINE Alu -10 302 15 553 209 20 85 chr1 27552807 27552944 -215111409 + MIR SINE MIR 86 207 -55 1593 143 121 18 chr1 27552952 27553232 -215111121 + AluSg1 SINE Alu 1 309 0 226 184 0 0 chr1 27553361 27553399 -215110954 + MIR SINE MIR 204 241 -21 189 289 105 0 chr1 27553470 27553546 -215110807 - MIR SINE MIR -90 118 35 284 283 150 17 chr1 27553673 27553793 -215110560 - MIR3 SINE MIR -63 145 10 190 263 0 0 chr1 27555160 27555198 -215109155 - L2 LINE L2 -21 3292 3255 2076 123 3 3 chr1 27555222 27555514 -215108839 + AluSq SINE Alu 1 292 -21 425 311 17 0 chr1 27555529 27555648 -215108705 - MIR SINE MIR -62 200 80 500 133 42 17 chr1 27556129 27556249 -215108104 - AluSc SINE Alu -3 306 184 884 120 0 0 chr1 27556350 27556467 -215107886 - AluJb SINE Alu -179 133 17 292 167 42 14 chr1 27556481 27556553 -215107800 - MER97c DNA MER1_type? -993 97 24 2435 78 0 3 chr1 27556641 27556937 -215107416 - AluSg SINE Alu -15 295 1 1997 127 52 14 chr1 27556938 27557229 -215107124 - AluSx SINE Alu -10 302 1 293 279 66 44 chr1 27557293 27557429 -215106924 + MIR SINE MIR 53 191 -71 1795 176 33 0 chr1 27557856 27558194 -215106159 - AluJo SINE Alu 0 348 1 663 217 7 14 chr1 27558229 27558372 -215105981 - MLT1B LTR MaLR -43 347 206 907 205 60 0 chr1 27558445 27558645 -215105708 - MLT1A1 LTR MaLR 0 365 154 494 119 239 9 chr1 27558649 27558758 -215105595 - FLAM_C SINE Alu -1 142 9 1162 92 0 0 chr1 27558782 27558946 -215105407 - L1PA7 LINE L1 -2 6152 5989 1736 135 56 0 chr1 27558947 27559251 -215105102 - MER58B DNA MER1_type -10 331 11 456 182 68 0 chr1 27559266 27559354 -215104999 + L2 LINE L2 3209 3302 -11 189 0 0 0 chr1 27559625 27559646 -215104707 + (T)n Simple_repeat Simple_repeat 1 21 0 801 136 0 8 chr1 27560833 27560951 -215103402 + AluJb SINE Alu 1 117 -195 497 79 26 13 chr1 27560951 27561027 -215103326 - AluSc SINE Alu -144 165 89 2653 68 0 0 chr1 27561229 27561539 -215102814 - AluY SINE Alu -1 310 1 468 310 137 15 chr1 27561544 27561741 -215102612 - MIR SINE MIR -8 254 34 * 1057 269 92 14 chr1 27561737 27561934 -215102419 - L2 LINE L2 -5 3308 3128 2272 97 7 7 chr1 27561934 27562234 -215102119 - AluSx SINE Alu -12 300 1 1057 269 92 14 chr1 27562234 27562582 -215101771 - L2 LINE L2 -185 3128 2720 654 298 25 25 chr1 27562710 27562955 -215101398 + MIR SINE MIR 3 247 -15 1951 159 3 0 chr1 27562975 27563271 -215101082 - AluJo SINE Alu -11 301 5 2529 77 3 0 chr1 27563502 27563812 -215100541 + AluY SINE Alu 1 311 0 1193 139 9 79 chr1 27563987 27564203 -215100150 + AluJb SINE Alu 101 301 -11 220 314 114 38 chr1 27564226 27564331 -215100022 + MIR SINE MIR 3 115 -147 * 396 291 186 51 chr1 27564311 27564441 -215099912 - L2 LINE L2 -2 3270 3159 2348 81 10 7 chr1 27564441 27564737 -215099616 + AluSp SINE Alu 1 297 -16 396 291 186 51 chr1 27564737 27564989 -215099364 - L2 LINE L2 -113 3159 2854 355 187 66 0 chr1 27565507 27565598 -215098755 + MER53 DNA DNA 4 100 -89 978 105 0 92 chr1 27565793 27566021 -215098332 + AluSq SINE Alu 14 220 -93 197 282 105 57 chr1 27568204 27568328 -215096025 - MIR3 SINE MIR -12 196 67 250 238 107 48 chr1 27570094 27570178 -215094175 - MIR SINE MIR -124 138 50 235 180 0 40 chr1 27570953 27571003 -215093350 - MLT1L LTR MaLR -153 462 415 403 273 76 0 chr1 27571105 27571237 -215093116 - MLT1L LTR MaLR -337 278 137 1124 28 28 0 chr1 27571414 27571558 -215092795 + L1PA4 LINE L1 6005 6152 -3 481 161 32 11 chr1 27571615 27571708 -215092645 - FLAM_C SINE Alu -18 125 31 419 202 11 0 chr1 27571723 27571812 -215092541 - L1MB7 LINE L1 -43 6141 6052 301 246 0 0 chr1 27571832 27571889 -215092464 + L1MC4 LINE L1 6640 6696 -1346 1989 170 65 28 chr1 27571891 27571940 -215092413 - L1MB8 LINE L1 -121 6057 6011 1795 142 26 42 chr1 27571940 27572250 -215092103 - AluJb SINE Alu -7 305 1 1989 170 65 28 chr1 27572250 27572686 -215091667 - L1MB8 LINE L1 -167 6011 5608 2328 107 3 3 chr1 27572690 27572999 -215091354 - AluSp SINE Alu -4 309 1 2085 117 28 3 chr1 27572999 27573289 -215091064 - AluSq SINE Alu -16 297 1 2211 100 0 20 chr1 27573292 27573591 -215090762 - AluSg SINE Alu -2 308 16 2388 78 13 10 chr1 27573610 27573918 -215090435 - AluSx SINE Alu -3 309 1 238 230 14 14 chr1 27573918 27573992 -215090361 - L1MB8 LINE L1 -808 5366 5293 2172 110 0 10 chr1 27574065 27574364 -215089989 - AluSx SINE Alu -6 306 11 2106 139 7 3 chr1 27574364 27574673 -215089680 - AluSx SINE Alu -2 310 1 687 195 101 13 chr1 27574713 27574872 -215089481 - AluJb SINE Alu -11 301 129 1924 139 0 24 chr1 27574885 27575040 -215089313 - AluSx SINE Alu -25 287 130 2129 93 25 4 chr1 27575040 27575319 -215089034 - AluSx SINE Alu -22 290 6 2206 107 3 3 chr1 27575319 27575610 -215088743 - AluSq SINE Alu -22 291 1 1924 139 0 24 chr1 27575610 27575747 -215088606 - AluSx SINE Alu -180 132 1 1027 199 84 28 chr1 27575748 27575815 -215088538 - L1MB8 LINE L1 -866 5280 5218 1532 186 36 7 chr1 27575815 27576111 -215088242 - AluJb SINE Alu 0 304 1 1027 199 84 28 chr1 27576111 27576363 -215087990 - L1MB8 LINE L1 -928 5218 4942 350 305 75 54 chr1 27576480 27576648 -215087705 + L2 LINE L2 2233 2411 -903 3784 102 20 9 chr1 27576648 27576769 -215087584 - MER41A LTR ERV1 0 554 436 2054 146 10 3 chr1 27576769 27577078 -215087275 + AluSx SINE Alu 1 311 -1 3784 102 20 9 chr1 27577078 27577504 -215086849 - MER41A LTR ERV1 -118 436 1 350 305 75 54 chr1 27577504 27577630 -215086723 + L2 LINE L2 2411 2533 -781 333 263 44 18 chr1 27577635 27577749 -215086604 - L1MC5 LINE L1 -32 7929 7813 2304 71 0 11 chr1 27577845 27578126 -215086227 + AluY SINE Alu 2 279 -32 346 197 0 0 chr1 27578126 27578187 -215086166 - AluJ/FLAM SINE Alu -241 61 1 789 330 162 8 chr1 27578187 27578799 -215085554 + L2 LINE L2 953 1658 -1656 240 158 18 18 chr1 27578846 27578903 -215085450 - AluSp/q SINE Alu 0 303 247 218 236 56 0 chr1 27578918 27578990 -215085363 + T-rich Low_complexity Low_complexity 2 77 0 2542 48 0 3 chr1 27579303 27579593 -215084760 - AluY SINE Alu -22 289 1 668 178 17 106 chr1 27579612 27579731 -215084622 - L1PB4 LINE L1 -18 6138 6039 2390 101 3 0 chr1 27579731 27580039 -215084314 - AluSp SINE Alu 0 313 5 668 178 17 106 chr1 27580039 27580099 -215084254 - L1PB4 LINE L1 -117 6039 5975 418 232 62 0 chr1 27580194 27580306 -215084047 + MER5A DNA MER1_type 26 144 -45 2263 92 6 47 chr1 27580314 27580631 -215083722 + AluSg SINE Alu 1 304 -6 2096 151 0 0 chr1 27580641 27580939 -215083414 + AluJb SINE Alu 1 298 -14 481 218 159 22 chr1 27581000 27581207 -215083146 + MLT1L LTR MaLR 197 458 -97 2059 174 52 48 chr1 27581245 27581550 -215082803 + Tigger7 DNA MER2_type 1 310 -423 2475 76 0 0 chr1 27581550 27581852 -215082501 + AluY SINE Alu 1 302 -9 2059 174 52 48 chr1 27581852 27581984 -215082369 + Tigger7 DNA MER2_type 310 440 -293 2029 120 31 10 chr1 27581985 27582276 -215082077 + AluSg SINE Alu 1 297 -13 446 48 105 0 chr1 27582276 27582400 -215081953 + (TA)n Simple_repeat Simple_repeat 1 137 0 265 198 66 91 chr1 27582342 27582449 -215081904 + Charlie5 DNA MER1_type 2433 2534 -90 * 2495 82 3 0 chr1 27582449 27582754 -215081599 - AluSp SINE Alu -7 306 1 265 198 66 91 chr1 27582754 27582843 -215081510 + Charlie5 DNA MER1_type 2534 2624 0 463 175 103 10 chr1 27582874 27582971 -215081382 - L2 LINE L2 -16 3297 3192 193 220 17 34 chr1 27582969 27583028 -215081325 - MIR SINE MIR -67 195 138 * 1587 164 51 18 chr1 27583050 27583325 -215081028 - AluJo SINE Alu -28 284 1 32 0 0 0 chr1 27583327 27583359 -215080994 + AT_rich Low_complexity Low_complexity 1 32 0 825 142 0 8 chr1 27583375 27583509 -215080844 + FLAM_C SINE Alu 1 133 0 29 28 0 0 chr1 27583509 27583545 -215080808 + AT_rich Low_complexity Low_complexity 1 36 0 1218 132 82 0 chr1 27583552 27583734 -215080619 - AluJo SINE Alu -30 282 86 531 331 7 0 chr1 27583735 27583877 -215080476 - MIR SINE MIR -110 152 10 381 290 45 19 chr1 27584393 27584548 -215079805 - MIR SINE MIR -80 182 24 2080 122 0 31 chr1 27584723 27585034 -215079319 - AluSx SINE Alu 0 306 5 2130 110 0 0 chr1 27585047 27585320 -215079033 - AluSx SINE Alu -26 286 14 512 252 31 16 chr1 27585462 27585589 -215078764 + MIR SINE MIR 16 144 -64 565 233 16 8 chr1 27585907 27586036 -215078317 - L2 LINE L2 -1 3312 3183 2348 100 3 0 chr1 27586093 27586392 -215077961 + AluSp SINE Alu 1 300 -13 212 300 0 0 chr1 27586669 27586729 -215077624 + L2 LINE L2 2449 2508 -806 * 366 286 8 42 chr1 27586714 27586833 -215077520 - L2 LINE L2 -5 3267 3153 249 291 92 0 chr1 27586840 27586981 -215077372 + L2 LINE L2 2537 2690 -624 390 112 7 17 chr1 27586992 27587074 -215077279 - Alu SINE Alu -1 301 243 1854 254 104 14 chr1 27587200 27587823 -215076530 + HAL1 LINE L1 19 697 -1810 308 158 0 0 chr1 27587826 27587883 -215076470 + HAL1 LINE L1 971 1027 -1480 1245 155 0 0 chr1 27587883 27588070 -215076283 - AluSg/x SINE Alu -5 305 119 2275 89 7 0 chr1 27588130 27588433 -215075920 + AluSg SINE Alu 1 305 0 590 246 24 0 chr1 27588476 27588643 -215075710 + HAL1 LINE L1 1093 1263 -1244 1554 158 15 11 chr1 27588656 27588929 -215075424 + AluJb SINE Alu 1 274 -38 1804 156 3 30 chr1 27588961 27589100 -215075253 + AluJb SINE Alu 1 142 -170 2487 80 0 13 chr1 27589100 27589414 -215074939 + AluY SINE Alu 2 311 0 1804 156 3 30 chr1 27589414 27589576 -215074777 + AluJb SINE Alu 142 294 -18 1604 160 0 16 chr1 27589578 27589828 -215074525 + AluSq SINE Alu 1 246 -67 1067 86 0 0 chr1 27589830 27589969 -215074384 + AluSg/x SINE Alu 170 308 -2 2182 98 7 7 chr1 27589974 27590261 -215074092 + AluSx SINE Alu 9 295 -17 1143 175 130 29 chr1 27590280 27590526 -215073827 - AluJo SINE Alu -12 300 30 400 243 39 0 chr1 27590582 27590685 -215073668 + HAL1 LINE L1 1824 1930 -577 1009 241 67 82 chr1 27590692 27591095 -215073258 + LTR16A LTR ERVL 1 397 -53 2470 74 0 3 chr1 27591150 27591449 -215072904 - AluY SINE Alu -13 298 1 310 206 342 22 chr1 27591449 27591677 -215072676 + HAL1 LINE L1 1941 2241 -266 1335 121 9 40 chr1 27591688 27591911 -215072442 + AluJb SINE Alu 85 300 -12 569 203 0 14 chr1 27591913 27592051 -215072302 + HAL1 LINE L1 2258 2393 -114 920 128 8 8 chr1 27592073 27592206 -215072147 - FLAM_C SINE Alu -10 133 1 227 309 144 10 chr1 27592272 27592369 -215071984 + L2 LINE L2 3193 3302 -11 1469 127 9 5 chr1 27592450 27592663 -215071690 + AluJb SINE Alu 87 300 -12 450 315 24 0 chr1 27592729 27592894 -215071459 + L2 LINE L2 2884 3052 -220 220 278 56 19 chr1 27592960 27593068 -215071285 - L2 LINE L2 -499 2815 2704 1487 91 11 0 chr1 27593243 27593430 -215070923 - AluSg/x SINE Alu -10 302 114 2218 71 0 8 chr1 27593531 27593798 -215070555 - AluSq SINE Alu -48 265 1 1976 155 3 3 chr1 27593896 27594186 -215070167 - AluJb SINE Alu -22 290 1 394 215 97 0 chr1 27594196 27594289 -215070064 - L1ME2 LINE L1 0 6164 6063 290 259 44 30 chr1 27594326 27594461 -215069892 - L1MC5 LINE L1 -515 7446 7310 2195 152 0 0 chr1 27594500 27594810 -215069543 + AluSx SINE Alu 1 310 -2 31 0 0 0 chr1 27594888 27594919 -215069434 + AT_rich Low_complexity Low_complexity 1 31 0 2386 91 0 0 chr1 27594919 27595217 -215069136 - AluY SINE Alu -13 298 1 337 250 164 23 chr1 27595618 27595746 -215068607 + L3 LINE CR1 1360 1505 -72 2453 217 134 31 chr1 27595990 27596196 -215068157 - L1ME3A LINE L1 -8 6162 5979 2122 94 0 4 chr1 27596196 27596508 -215067845 - AluSq SINE Alu 0 330 20 2453 217 134 31 chr1 27596508 27596945 -215067408 - L1ME3A LINE L1 -191 5979 5420 2505 81 0 10 chr1 27596945 27597254 -215067099 - AluSx SINE Alu -6 306 1 2453 217 134 31 chr1 27597254 27597392 -215066961 - L1ME3A LINE L1 -750 5420 5298 181 250 42 0 chr1 27597643 27597691 -215066662 - MIR SINE MIR -23 239 190 1901 134 7 39 chr1 27597691 27597996 -215066357 - AluJb SINE Alu -17 295 1 2316 119 0 0 chr1 27598038 27598348 -215066005 - AluSg SINE Alu 0 310 1 559 285 35 25 chr1 27598432 27598632 -215065721 - MIR SINE MIR -26 236 35 258 274 197 0 chr1 27598791 27598908 -215065445 + MER102b DNA MER1_type 173 312 -29 192 156 0 0 chr1 27598980 27599012 -215065341 - MER5A DNA MER1_type -23 166 135 2308 107 0 13 chr1 27599136 27599446 -215064907 + AluSq SINE Alu 1 306 -7 293 270 40 60 chr1 27599503 27599583 -215064770 + MIR SINE MIR 20 97 -111 1732 154 95 0 chr1 27599583 27599856 -215064497 + AluSx SINE Alu 1 299 -13 293 270 40 60 chr1 27599856 27599906 -215064447 + MIR SINE MIR 97 146 -62 289 222 100 67 chr1 27600383 27600473 -215063880 - L2 LINE L2 -1 3271 3179 401 270 110 10 chr1 27600645 27600845 -215063508 - L2 LINE L2 -891 2423 2204 1741 157 18 14 chr1 27600870 27601170 -215063183 + AluJo SINE Alu 1 301 0 249 256 51 13 chr1 27601212 27601290 -215063063 - MIR3 SINE MIR -51 157 77 674 220 148 0 chr1 27601297 27601479 -215062874 - L2 LINE L2 0 3313 3105 2390 89 0 0 chr1 27601508 27601800 -215062553 + AluSx SINE Alu 1 292 -20 494 246 84 0 chr1 27601800 27601942 -215062411 - L2 LINE L2 -855 2459 2306 184 240 66 153 chr1 27603212 27603395 -215060958 - L2 LINE L2 -89 3183 3017 445 259 41 14 chr1 27603473 27603620 -215060733 - MIR SINE MIR -80 182 32 2387 111 0 0 chr1 27604326 27604633 -215059720 + AluSg SINE Alu 1 307 -3 454 209 86 29 chr1 27605885 27606024 -215058329 - MIR SINE MIR -2 260 114 1219 276 144 38 chr1 27606037 27606573 -215057780 - L2 LINE L2 -3 3310 2832 2000 111 35 14 chr1 27606573 27606861 -215057492 + AluSx SINE Alu 1 294 -18 1219 276 144 38 chr1 27606861 27607209 -215057144 - L2 LINE L2 -481 2832 2310 1135 65 0 14 chr1 27607209 27607347 -215057006 + AluSp SINE Alu 1 136 -177 2460 90 0 0 chr1 27607348 27607658 -215056695 + AluY SINE Alu 2 311 0 466 242 16 0 chr1 27607659 27607783 -215056570 - L2 LINE L2 -997 2317 2192 587 244 144 0 chr1 27607785 27607945 -215056408 + MER5A DNA MER1_type 7 189 0 370 307 95 58 chr1 27608846 27609120 -215055233 + L2 LINE L2 2989 3272 0 391 281 26 9 chr1 27609334 27609448 -215054905 + MIR SINE MIR 101 216 -46 725 150 0 64 chr1 27609607 27609747 -215054606 + FLAM_C SINE Alu 1 131 -2 364 101 14 0 chr1 27609748 27609814 -215054539 + LTR23 LTR ERV1 314 388 -57 711 176 171 27 chr1 27609913 27610100 -215054253 - AluJo SINE Alu -16 296 83 379 301 166 5 chr1 27610208 27610401 -215053952 - MIR SINE MIR -33 229 6 445 245 45 60 chr1 27611074 27611107 -215053246 - MIR SINE MIR -65 143 111 2431 99 0 0 chr1 27611107 27611410 -215052943 - AluSg SINE Alu -7 303 1 445 245 45 60 chr1 27611410 27611557 -215052796 - MIR SINE MIR -97 111 5 484 271 206 0 chr1 27611585 27611784 -215052569 - L3 LINE CR1 -4 1573 1334 316 284 29 20 chr1 27612057 27612159 -215052194 + MIR SINE MIR 13 115 -147 2022 134 3 38 chr1 27612210 27612523 -215051830 + AluSx SINE Alu 1 302 -10 2206 102 11 0 chr1 27612524 27612831 -215051522 + AluSq SINE Alu 1 310 0 269 217 84 12 chr1 27612989 27613072 -215051281 + MIR SINE MIR 47 135 -127 1634 174 0 75 chr1 27613077 27613398 -215050955 - AluJb SINE Alu -15 297 1 319 254 37 90 chr1 27613822 27613956 -215050397 + MIR3 SINE MIR 36 162 -46 1821 142 0 57 chr1 27614315 27614646 -215049707 + AluJb SINE Alu 1 312 0 241 242 33 66 chr1 27614716 27614807 -215049546 - MIR SINE MIR -83 125 38 2140 111 40 0 chr1 27615151 27615449 -215048904 + AluSp SINE Alu 1 310 -3 2987 214 48 35 chr1 27615449 27616002 -215048351 - L1ME2 LINE L1 -3 6161 5617 1829 148 28 3 chr1 27616002 27616293 -215048060 + AluJb SINE Alu 1 298 -14 2987 214 48 35 chr1 27616293 27616399 -215047954 - L1ME2 LINE L1 -547 5617 5514 2158 108 3 10 chr1 27616399 27616696 -215047657 - AluSq SINE Alu -13 300 6 2364 106 0 0 chr1 27616701 27616994 -215047359 - AluSg SINE Alu -17 293 1 2987 214 48 35 chr1 27616994 27617158 -215047195 - L1ME2 LINE L1 -653 5511 5320 2156 97 3 21 chr1 27617173 27617487 -215046866 + AluSq SINE Alu 1 309 0 2156 137 0 28 chr1 27617497 27617818 -215046535 + AluSx SINE Alu 1 312 0 1644 189 43 23 chr1 27617830 27618131 -215046222 + AluJb SINE Alu 1 307 -5 423 241 27 18 chr1 27618141 27618253 -215046100 - MIR SINE MIR -149 113 1 2508 79 3 0 chr1 27618291 27618595 -215045758 - AluY SINE Alu -6 305 1 2120 211 112 27 chr1 27618632 27618893 -215045460 - L1ME2 LINE L1 -1550 4596 4359 2087 124 34 3 chr1 27618893 27619184 -215045169 - AluSx SINE Alu -12 300 1 2120 211 112 27 chr1 27619184 27619243 -215045110 - L1ME2 LINE L1 -1787 4359 4306 2244 98 7 23 chr1 27619243 27619548 -215044805 - AluSx SINE Alu -12 300 1 2120 211 112 27 chr1 27619548 27619957 -215044396 - L1ME2 LINE L1 -1840 4306 3804 1007 213 0 0 chr1 27619971 27620145 -215044208 - AluJb SINE Alu -1 311 138 2181 116 3 0 chr1 27620156 27620457 -215043896 - AluSx SINE Alu -4 308 7 1870 191 0 0 chr1 27620490 27620799 -215043554 + AluJb SINE Alu 1 309 -3 2202 136 0 0 chr1 27620811 27621112 -215043241 + AluSx SINE Alu 1 301 -11 321 311 30 7 chr1 27621274 27621409 -215042944 - MIR SINE MIR -23 239 102 471 282 126 11 chr1 27621452 27621640 -215042713 - MIR SINE MIR -3 259 53 2497 74 0 0 chr1 27621913 27622211 -215042142 + AluY SINE Alu 5 302 -9 2485 68 7 0 chr1 27622286 27622580 -215041773 + AluSg SINE Alu 2 297 -13 310 289 11 22 chr1 27622635 27622725 -215041628 + MIR SINE MIR 26 114 -148 337 129 29 0 chr1 27622725 27622795 -215041558 + CT-rich Low_complexity Low_complexity 3 74 0 2267 112 0 0 chr1 27622797 27623092 -215041261 - AluSg SINE Alu -15 295 1 899 213 119 67 chr1 27623092 27623495 -215040858 - L1M4 LINE L1 -1012 5134 4711 310 127 14 99 chr1 27623499 27623570 -215040783 - FLAM_A SINE Alu -1 132 68 658 185 134 13 chr1 27623643 27623800 -215040553 - MIR SINE MIR -56 206 31 428 159 0 0 chr1 27623817 27623880 -215040473 - AluJ/FLAM SINE Alu -246 66 4 2261 130 3 15 chr1 27623890 27624214 -215040139 - 7SLRNA srpRNA srpRNA 0 320 1 2143 134 3 3 chr1 27624276 27624582 -215039771 - AluSx SINE Alu -6 306 1 186 43 0 0 chr1 27624583 27624606 -215039747 + (T)n Simple_repeat Simple_repeat 1 23 0 805 40 0 0 chr1 27624609 27624708 -215039645 - HY3 scRNA scRNA -1 100 2 335 289 101 46 chr1 27624712 27624930 -215039423 - L1ME LINE L1 -511 5655 5426 * 680 197 92 0 chr1 27624927 27625079 -215039274 - L1MA10 LINE L1 0 6334 6169 189 94 0 0 chr1 27625081 27625113 -215039240 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2439 70 0 3 chr1 27625114 27625399 -215038954 - AluSp SINE Alu -29 284 1 2029 157 3 0 chr1 27625409 27625715 -215038638 - AluSx SINE Alu -3 309 3 653 229 117 11 chr1 27625851 27626030 -215038323 + MIR SINE MIR 5 202 -60 227 152 0 0 chr1 27626052 27626085 -215038268 + C-rich Low_complexity Low_complexity 129 161 0 6212 57 22 51 chr1 27626086 27626112 -215038241 + SVA Other Other 1 866 -618 6212 55 21 55 chr1 27626112 27627008 -215037345 + SVA Other Other 1 866 -520 6882 61 5 28 chr1 27627112 27628184 -215036169 + SVA Other Other 534 1386 0 292 262 189 43 chr1 27628683 27628847 -215035506 - MIR SINE MIR 0 262 75 1722 173 20 14 chr1 27629116 27629411 -215034942 - AluJb SINE Alu -15 297 1 238 286 117 99 chr1 27629460 27629673 -215034680 - LTR16A1 LTR ERVL -62 395 179 288 272 181 69 chr1 27629866 27630026 -215034327 + MIR SINE MIR 40 216 -46 1754 171 0 0 chr1 27630039 27630326 -215034027 + AluJb SINE Alu 1 287 -25 590 309 34 90 chr1 27630394 27630773 -215033580 - L2 LINE L2 -4 3268 2911 322 292 72 82 chr1 27630801 27630859 -215033494 - L2 LINE L2 -508 2806 2749 1570 94 197 4 chr1 27630859 27631113 -215033240 + AluSq SINE Alu 1 303 0 322 292 72 82 chr1 27631113 27631249 -215033104 - L2 LINE L2 -565 2749 2614 1906 120 43 7 chr1 27631435 27631736 -215032617 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 27631759 27631782 -215032571 + AT_rich Low_complexity Low_complexity 1 23 0 2176 86 19 26 chr1 27631785 27632098 -215032255 + AluSx SINE Alu 1 311 -1 1816 137 30 20 chr1 27632103 27632402 -215031951 + AluJb SINE Alu 3 304 -8 979 155 7 0 chr1 27632402 27632557 -215031796 + AluJo/FRAM SINE Alu 134 289 -23 2070 92 0 83 chr1 27632576 27632914 -215031439 + AluSx SINE Alu 1 310 -2 257 133 67 83 chr1 27633007 27633067 -215031286 + U7 snRNA snRNA 2 60 -3 * 298 167 19 0 chr1 27633045 27633099 -215031254 - U7 snRNA snRNA -7 56 2 1687 208 61 113 chr1 27636141 27636379 -215027974 - L2 LINE L2 0 3313 3064 2235 87 0 3 chr1 27636379 27636679 -215027674 - AluSc SINE Alu -10 299 1 1687 208 61 113 chr1 27636679 27636970 -215027383 - L2 LINE L2 -249 3064 2759 186 43 0 0 chr1 27636970 27636993 -215027360 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2006 110 0 17 chr1 27636993 27637278 -215027075 - AluSx SINE Alu -32 280 1 1687 208 61 113 chr1 27637278 27637388 -215026965 - L2 LINE L2 -553 2760 2646 1587 171 4 4 chr1 27637388 27637652 -215026701 - AluJo SINE Alu -48 264 1 1687 208 61 113 chr1 27637652 27637959 -215026394 - L2 LINE L2 -667 2646 2435 461 326 0 21 chr1 27637959 27638100 -215026253 + MIR SINE MIR 3 140 -122 322 292 30 77 chr1 27638089 27638257 -215026096 + L2 LINE L2 2680 2839 -475 * 180 77 0 0 chr1 27638318 27638344 -215026009 + (TCCCC)n Simple_repeat Simple_repeat 4 29 0 1416 164 27 79 chr1 27638354 27638564 -215025789 - AluJb SINE Alu 0 312 93 1873 138 7 3 chr1 27638564 27638868 -215025485 + AluSx SINE Alu 1 305 -7 234 0 0 0 chr1 27638868 27638894 -215025459 + (TA)n Simple_repeat Simple_repeat 2 27 0 1416 164 27 79 chr1 27638894 27639011 -215025342 - AluJb SINE Alu -217 95 1 2128 119 0 0 chr1 27639032 27639334 -215025019 - AluSq SINE Alu -11 302 1 2084 97 23 0 chr1 27639362 27639661 -215024692 + AluSx SINE Alu 1 306 -6 688 267 197 29 chr1 27639661 27639976 -215024377 + L2 LINE L2 2937 3304 -9 1633 147 0 23 chr1 27640039 27640305 -215024048 - AluJb SINE Alu -52 260 1 216 0 0 0 chr1 27640310 27640334 -215024019 + (T)n Simple_repeat Simple_repeat 1 24 0 1748 156 7 7 chr1 27640357 27640652 -215023701 + AluSx SINE Alu 1 295 -17 1026 75 0 0 chr1 27640666 27640799 -215023554 - AluSq/x SINE Alu -179 133 1 863 238 119 55 chr1 27640972 27641300 -215023053 + L2 LINE L2 2961 3309 -4 260 358 62 19 chr1 27642175 27642337 -215022016 + MER5A DNA MER1_type 1 169 -20 2259 104 0 3 chr1 27642905 27643214 -215021139 + AluSx SINE Alu 1 308 -4 1966 107 0 57 chr1 27643226 27643543 -215020810 + AluSx SINE Alu 1 299 -13 668 188 0 0 chr1 27643936 27644048 -215020305 + FLAM_C SINE Alu 2 113 -30 1145 140 105 143 chr1 27644093 27644215 -215020138 + AluJb SINE Alu 1 126 -206 2295 53 11 0 chr1 27644215 27644496 -215019857 - AluSp SINE Alu -25 288 5 1145 140 105 143 chr1 27644496 27644717 -215019636 + AluJb SINE Alu 126 332 0 599 214 117 41 chr1 27645410 27645606 -215018747 - MIR SINE MIR -29 233 23 753 106 0 35 chr1 27646060 27646173 -215018180 - AluSg/x SINE Alu -17 292 184 2343 86 0 0 chr1 27646199 27646501 -215017852 - AluSg SINE Alu -8 302 1 1589 130 108 11 chr1 27646558 27646827 -215017526 - AluSq SINE Alu -18 295 1 257 214 29 14 chr1 27647079 27647149 -215017204 - MIR SINE MIR -80 182 112 648 282 248 21 chr1 27647185 27647604 -215016749 - L3 LINE CR1 -98 1479 966 1940 136 7 0 chr1 27647953 27648247 -215016106 - AluSx SINE Alu -16 296 1 410 262 40 47 chr1 27648539 27648688 -215015665 + MIR SINE MIR 41 188 -74 2190 90 7 0 chr1 27648704 27648993 -215015360 - AluSx SINE Alu -21 291 1 1425 153 4 4 chr1 27648996 27649231 -215015122 - AluJb SINE Alu -18 294 60 215 146 0 83 chr1 27649236 27649284 -215015069 + MIR SINE MIR 190 233 -29 230 235 29 15 chr1 27651144 27651212 -215013141 + C-rich Low_complexity Low_complexity 1 69 0 217 231 96 0 chr1 27652276 27652328 -215012025 - MIR3 SINE MIR -37 171 115 2337 50 0 0 chr1 27652807 27653121 -215011232 + AluY SINE Alu 1 314 0 27 0 0 0 chr1 27653153 27653180 -215011173 + AT_rich Low_complexity Low_complexity 1 27 0 2019 91 18 7 chr1 27653270 27653556 -215010797 - AluSx SINE Alu -23 289 1 2363 43 7 0 chr1 27653644 27653944 -215010409 - AluY SINE Alu -9 302 1 379 203 0 0 chr1 27654142 27654216 -215010137 - AluJo SINE Alu 0 302 229 811 155 0 52 chr1 27654216 27654371 -215009982 - AluJo SINE Alu -165 147 1 704 199 77 13 chr1 27654636 27654792 -215009561 - AluJo/FRAM SINE Alu 0 302 137 1239 99 0 0 chr1 27654795 27654966 -215009387 - AluSp SINE Alu -5 308 138 1430 80 5 0 chr1 27654966 27655154 -215009199 - AluSp SINE Alu -124 189 1 1986 111 3 7 chr1 27655156 27655454 -215008899 - AluY SINE Alu -13 298 2 1502 158 10 45 chr1 27655502 27655793 -215008560 + AluJo SINE Alu 1 281 -31 2156 78 3 68 chr1 27655813 27656134 -215008219 + AluSp SINE Alu 1 300 -13 2179 103 0 13 chr1 27656142 27656453 -215007900 + AluSg SINE Alu 3 309 -1 2200 207 123 6 chr1 27657091 27657636 -215006717 + L1MC4 LINE L1 7069 7677 -365 1382 177 26 15 chr1 27657666 27657932 -215006421 + AluJo SINE Alu 14 282 -30 942 209 60 60 chr1 27657945 27658062 -215006291 + L1MC4 LINE L1 7699 7815 -227 2567 42 0 3 chr1 27658062 27658374 -215005979 - AluY SINE Alu 0 311 1 942 209 60 60 chr1 27658374 27658587 -215005766 + L1MC4 LINE L1 7814 8029 -13 537 284 57 0 chr1 27658595 27658736 -215005617 - MIR3 SINE MIR -43 165 17 2177 117 0 0 chr1 27659123 27659431 -215004922 + AluSx SINE Alu 1 308 -4 2370 80 5 80 chr1 27659546 27659932 -215004421 - L1PA14 LINE L1 -1 6160 5804 415 111 111 0 chr1 27660123 27660195 -215004158 - MER116 DNA Mariner 0 80 1 2356 88 0 0 chr1 27660439 27660747 -215003606 - AluSg SINE Alu -2 308 1 216 0 0 0 chr1 27660779 27660803 -215003550 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 608 215 0 0 chr1 27660803 27660910 -215003443 - FRAM SINE Alu -32 144 38 326 50 0 0 chr1 27660910 27660950 -215003403 + MER41B-int LTR ERV1 241 280 -5666 899 105 8 30 chr1 27660950 27661083 -215003270 + FLAM_C SINE Alu 1 130 -13 10654 102 22 41 chr1 27661083 27661761 -215002592 + MER41B-int LTR ERV1 283 972 -4974 1991 114 0 0 chr1 27661761 27662065 -215002288 - AluSg SINE Alu 0 305 2 10654 102 22 41 chr1 27662065 27662174 -215002179 + MER41B-int LTR ERV1 972 1082 -4864 1473 119 70 0 chr1 27662174 27662401 -215001952 + AluSg/x SINE Alu 66 308 -4 10654 102 22 41 chr1 27662401 27663351 -215001002 + MER41B-int LTR ERV1 1082 1775 -4171 5394 94 5 87 chr1 27663350 27663487 -215000866 + MER41B-int LTR ERV1 4945 5092 -2664 * 2352 77 7 0 chr1 27663487 27663787 -215000566 + AluSx SINE Alu 1 302 -10 5394 94 5 87 chr1 27663787 27663928 -215000425 + MER41B-int LTR ERV1 5092 5243 -2513 2432 63 0 0 chr1 27663928 27664230 -215000123 + AluY SINE Alu 1 302 -9 2032 129 0 0 chr1 27664238 27664532 -214999821 + AluSx SINE Alu 1 294 -18 5394 94 5 87 chr1 27664532 27664754 -214999599 + MER41B-int LTR ERV1 5250 5489 -2267 2206 102 0 7 chr1 27664754 27665057 -214999296 + AluSp SINE Alu 2 302 -11 5394 94 5 87 chr1 27665057 27665266 -214999087 + MER41B-int LTR ERV1 5489 5714 -2042 2197 109 0 3 chr1 27665266 27665577 -214998776 - AluSg SINE Alu 0 310 1 2176 71 0 0 chr1 27665582 27665901 -214998452 - AluY SINE Alu 0 319 1 5394 94 5 87 chr1 27665901 27666569 -214997784 + MER41B-int LTR ERV1 5718 7756 0 1417 111 19 0 chr1 27666569 27666777 -214997576 + MER41B LTR ERV1 1 212 -423 884 129 0 0 chr1 27666778 27666902 -214997451 + AluJ SINE Alu 1 124 -188 498 64 96 0 chr1 27666905 27667061 -214997292 + (TA)n Simple_repeat Simple_repeat 1 171 0 816 192 53 0 chr1 27667061 27667212 -214997141 + AluJ SINE Alu 133 291 -21 2816 126 2 26 chr1 27667213 27667543 -214996810 + MER41B LTR ERV1 195 513 -122 2118 72 41 0 chr1 27667543 27667835 -214996518 - AluY SINE Alu -7 304 1 2816 126 2 26 chr1 27667835 27667956 -214996397 + MER41B LTR ERV1 513 635 0 2027 120 0 0 chr1 27668016 27668340 -214996013 - AluSx SINE Alu 0 324 1 2180 86 0 3 chr1 27668501 27668791 -214995562 - AluY SINE Alu -10 301 13 2183 109 0 0 chr1 27668833 27669127 -214995226 - AluSg SINE Alu -16 294 1 1712 116 45 68 chr1 27669190 27669500 -214994853 - AluSx SINE Alu -7 305 3 1370 148 31 113 chr1 27669607 27669925 -214994428 + AluJb SINE Alu 4 295 -17 499 319 143 43 chr1 27669953 27670122 -214994231 - MLT1L LTR MaLR -17 598 447 315 0 0 0 chr1 27670122 27670157 -214994196 + (TG)n Simple_repeat Simple_repeat 2 36 0 2078 102 0 0 chr1 27670157 27670440 -214993913 - AluSg SINE Alu -26 284 2 499 319 143 43 chr1 27670440 27670801 -214993552 - MLT1L LTR MaLR -167 448 14 281 161 0 0 chr1 27670884 27670936 -214993417 + L1MB7 LINE L1 5663 5714 -464 1716 175 129 5 chr1 27671306 27671678 -214992675 + L1MB7 LINE L1 5706 6123 -61 1924 145 3 0 chr1 27671678 27671981 -214992372 - AluSx SINE Alu -8 304 1 2167 104 0 10 chr1 27671984 27672291 -214992062 - AluSp SINE Alu -9 304 1 2318 82 0 0 chr1 27672624 27672927 -214991426 - AluSg SINE Alu -7 303 1 625 164 0 0 chr1 27672944 27673048 -214991305 - U13 snRNA snRNA 0 104 1 1450 142 58 84 chr1 27673133 27673262 -214991091 + AluJb SINE Alu 1 132 -180 1995 112 0 0 chr1 27673262 27673538 -214990815 + AluSx SINE Alu 25 300 -12 1450 142 58 84 chr1 27673538 27673717 -214990636 + AluJb SINE Alu 132 301 -11 2134 88 24 14 chr1 27673839 27673975 -214990378 + AluSx SINE Alu 1 134 -178 2118 71 29 32 chr1 27673975 27674283 -214990070 + AluSq SINE Alu 1 307 -6 2134 88 24 14 chr1 27674283 27674441 -214989912 + AluSx SINE Alu 134 298 -14 1361 167 0 0 chr1 27674447 27674663 -214989690 + AluJo SINE Alu 86 301 -11 2042 123 0 10 chr1 27674771 27675072 -214989281 - AluSx SINE Alu -14 298 1 2393 46 3 16 chr1 27675308 27675612 -214988741 - AluY SINE Alu -11 300 1 1693 143 59 0 chr1 27676799 27677072 -214987281 + AluSx SINE Alu 1 289 -23 2284 89 0 10 chr1 27677080 27677393 -214986960 + AluSp SINE Alu 1 310 -3 1875 155 3 0 chr1 27677396 27677699 -214986654 + AluSx SINE Alu 1 304 -8 1716 175 129 5 chr1 27677699 27678071 -214986282 - L1MB7 LINE L1 -61 6123 5706 254 159 0 0 chr1 27678441 27678493 -214985860 - L1MB7 LINE L1 -460 5714 5663 382 319 112 21 chr1 27678576 27678817 -214985536 + MLT1L LTR MaLR 14 276 -339 2007 107 4 0 chr1 27678937 27679217 -214985136 + AluSx SINE Alu 2 282 -30 495 0 0 0 chr1 27679219 27679274 -214985079 + (CA)n Simple_repeat Simple_repeat 2 56 0 246 273 141 16 chr1 27679296 27679417 -214984936 + MLT1L LTR MaLR 431 566 -49 2359 41 7 3 chr1 27679420 27679715 -214984638 + AluY SINE Alu 1 296 -15 1337 139 147 45 chr1 27679784 27680050 -214984303 - AluJb SINE Alu -16 296 4 1830 117 57 7 chr1 27680157 27680439 -214983914 + AluSx SINE Alu 3 298 -14 2195 102 0 0 chr1 27680502 27680797 -214983556 + AluSg SINE Alu 1 295 -15 608 194 8 22 chr1 27680815 27680949 -214983404 + MER103 DNA DNA 32 163 -3 1793 142 0 4 chr1 27681073 27681348 -214983005 + AluSg SINE Alu 5 278 -32 183 42 0 0 chr1 27681348 27681372 -214982981 + (TAA)n Simple_repeat Simple_repeat 1 24 0 264 274 0 29 chr1 27681386 27681414 -214982939 + GA-rich Low_complexity Low_complexity 1 28 -71 2065 120 3 0 chr1 27681414 27681723 -214982630 + AluSx SINE Alu 1 310 -2 264 274 0 29 chr1 27681723 27681796 -214982557 + GA-rich Low_complexity Low_complexity 28 99 0 189 0 0 0 chr1 27681965 27681986 -214982367 + (TTTAA)n Simple_repeat Simple_repeat 4 24 0 2099 112 0 0 chr1 27681987 27682282 -214982071 - AluSx SINE Alu -17 295 1 189 234 43 0 chr1 27682390 27682437 -214981916 - MIR3 SINE MIR -3 205 157 369 0 0 0 chr1 27682630 27682671 -214981682 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1954 120 0 0 chr1 27682681 27682955 -214981398 - AluSx SINE Alu -38 274 1 214 391 20 20 chr1 27682960 27683111 -214981242 - L2 LINE L2 -228 3044 2894 355 81 0 32 chr1 27683867 27683929 -214980424 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1835 137 38 7 chr1 27683929 27684221 -214980132 - AluSx SINE Alu -11 301 1 472 288 100 75 chr1 27684248 27684515 -214979838 + L1MEc LINE L1 1053 1312 -5322 2225 97 0 3 chr1 27684515 27684815 -214979538 + AluSq SINE Alu 1 299 -14 472 288 100 75 chr1 27684815 27684985 -214979368 + L1MEc LINE L1 1312 1607 -5027 864 127 0 8 chr1 27685074 27685200 -214979153 + AluJo/FLAM SINE Alu 2 126 -176 429 153 42 0 chr1 27685200 27685272 -214979081 + AluJ/FRAM SINE Alu 225 299 -13 496 271 72 18 chr1 27685357 27685523 -214978830 - L1ME LINE L1 -459 5662 5488 4335 153 38 72 chr1 27685572 27685678 -214978675 + L1MB4 LINE L1 4779 4887 -1293 1576 150 97 4 chr1 27685678 27685945 -214978408 + AluJb SINE Alu 1 292 -20 4335 153 38 72 chr1 27685945 27686206 -214978147 + L1MB4 LINE L1 4887 5155 -1025 1293 165 122 54 chr1 27686206 27686485 -214977868 + AluJo SINE Alu 5 302 0 4335 153 38 72 chr1 27686485 27686680 -214977673 + L1MB4 LINE L1 5155 5355 -825 2320 84 3 3 chr1 27686680 27686990 -214977363 + AluSx SINE Alu 1 310 -2 4335 153 38 72 chr1 27686990 27687275 -214977078 + L1MB4 LINE L1 5355 5648 -532 611 90 0 0 chr1 27687275 27687353 -214977000 - MADE1 DNA Mariner -2 78 1 4335 153 38 72 chr1 27687353 27687457 -214976896 + L1MB4 LINE L1 5648 5754 -426 1991 134 3 19 chr1 27687457 27687771 -214976582 - AluSx SINE Alu -3 309 1 4335 153 38 72 chr1 27687771 27687912 -214976441 + L1MB4 LINE L1 5754 5898 -282 2021 120 0 13 chr1 27687912 27688048 -214976305 + AluSx SINE Alu 1 137 -175 1979 118 52 0 chr1 27688048 27688336 -214976017 + AluSx SINE Alu 1 303 -9 2021 120 0 13 chr1 27688336 27688498 -214975855 + AluSx SINE Alu 137 295 -17 1885 131 3 38 chr1 27688503 27688816 -214975537 + AluSx SINE Alu 11 312 0 4335 153 38 72 chr1 27688816 27689009 -214975344 + L1MB4 LINE L1 5902 6025 -155 1664 185 0 35 chr1 27689009 27689323 -214975030 - AluJb SINE Alu -9 303 1 4335 153 38 72 chr1 27689323 27689435 -214974918 + L1MB4 LINE L1 6025 6139 -41 2180 97 0 7 chr1 27689437 27689737 -214974616 + AluSq SINE Alu 1 298 -15 834 78 0 0 chr1 27689747 27689862 -214974491 + AluSc SINE Alu 174 288 -21 1950 120 7 7 chr1 27689902 27690202 -214974151 - AluSx SINE Alu -12 300 1 2089 115 0 0 chr1 27690203 27690499 -214973854 - AluSx SINE Alu -16 296 1 374 159 0 0 chr1 27690499 27690562 -214973791 - Alu SINE Alu -6 296 234 1650 143 0 0 chr1 27690662 27690914 -214973439 + AluSx SINE Alu 59 310 -2 35 0 0 0 chr1 27690992 27691027 -214973326 + AT_rich Low_complexity Low_complexity 1 35 0 2226 83 0 0 chr1 27691031 27691321 -214973032 - AluY SINE Alu -21 290 1 362 250 164 23 chr1 27691722 27691850 -214972503 + L3 LINE CR1 1360 1505 -72 2579 209 135 32 chr1 27692094 27692300 -214972053 - L1ME3A LINE L1 -8 6162 5979 1979 94 0 4 chr1 27692300 27692612 -214971741 - AluSq SINE Alu 0 330 20 2579 209 135 32 chr1 27692612 27693049 -214971304 - L1ME3A LINE L1 -191 5979 5420 2321 84 0 10 chr1 27693049 27693358 -214970995 - AluSx SINE Alu -6 306 1 2579 209 135 32 chr1 27693358 27693496 -214970857 - L1ME3A LINE L1 -750 5420 5298 188 250 42 0 chr1 27693747 27693795 -214970558 - MIR SINE MIR -23 239 190 1746 134 7 39 chr1 27693795 27694100 -214970253 - AluJb SINE Alu -17 295 1 2148 119 0 0 chr1 27694142 27694452 -214969901 - AluSg SINE Alu 0 310 1 593 285 35 25 chr1 27694536 27694736 -214969617 - MIR SINE MIR -26 236 35 263 274 197 0 chr1 27694895 27695012 -214969341 + MER102a DNA MER1_type 162 301 -29 201 156 0 0 chr1 27695084 27695116 -214969237 - MER5A DNA MER1_type -23 166 135 1955 118 0 22 chr1 27695240 27695553 -214968800 + AluSq SINE Alu 1 306 -7 316 270 40 60 chr1 27695610 27695690 -214968663 + MIR SINE MIR 20 97 -111 1592 154 95 0 chr1 27695690 27695963 -214968390 + AluSx SINE Alu 1 299 -13 316 270 40 60 chr1 27695963 27696013 -214968340 + MIR SINE MIR 97 146 -62 311 222 100 67 chr1 27696490 27696580 -214967773 - L2 LINE L2 -1 3271 3179 428 255 115 15 chr1 27696752 27696952 -214967401 - L2 LINE L2 -891 2423 2204 1594 157 18 14 chr1 27696977 27697277 -214967076 + AluJo SINE Alu 1 301 0 259 256 51 13 chr1 27697319 27697397 -214966956 - MIR3 SINE MIR -51 157 77 722 214 148 0 chr1 27697404 27697586 -214966767 - L2 LINE L2 0 3313 3105 2235 89 0 0 chr1 27697615 27697907 -214966446 + AluSx SINE Alu 1 292 -20 534 219 103 13 chr1 27697907 27698062 -214966291 - L2 LINE L2 -855 2459 2291 207 235 66 153 chr1 27699319 27699502 -214964851 - L2 LINE L2 -89 3183 3017 469 259 41 14 chr1 27699580 27699727 -214964626 - MIR SINE MIR -80 182 32 2224 111 0 0 chr1 27700433 27700740 -214963613 + AluSg SINE Alu 1 307 -3 483 209 86 29 chr1 27701992 27702131 -214962222 - MIR SINE MIR -2 260 114 1325 273 145 39 chr1 27702157 27702680 -214961673 - L2 LINE L2 -16 3297 2831 1848 111 35 14 chr1 27702680 27702968 -214961385 + AluSx SINE Alu 1 294 -18 1325 273 145 39 chr1 27702968 27703316 -214961037 - L2 LINE L2 -482 2831 2310 1059 63 0 0 chr1 27703316 27703443 -214960910 + AluSp SINE Alu 1 127 -186 2298 90 0 0 chr1 27703455 27703765 -214960588 + AluY SINE Alu 2 311 0 497 242 16 0 chr1 27703766 27703890 -214960463 - L2 LINE L2 -997 2317 2192 626 244 144 0 chr1 27703892 27704052 -214960301 + MER5A DNA MER1_type 7 189 0 1672 148 0 39 chr1 27704505 27704810 -214959543 + AluJb SINE Alu 1 293 -19 265 242 33 66 chr1 27704906 27704997 -214959356 - MIR SINE MIR -83 125 38 237 159 0 0 chr1 27705303 27705341 -214959012 - L1ME3 LINE L1 -7 6155 6117 1988 103 41 0 chr1 27705341 27705631 -214958722 + AluSp SINE Alu 1 302 -11 24 0 0 0 chr1 27705636 27705660 -214958693 + AT_rich Low_complexity Low_complexity 1 24 0 246 258 0 0 chr1 27705662 27705724 -214958629 - L1ME3 LINE L1 -26 6136 6075 1369 97 0 0 chr1 27705871 27706056 -214958297 + AluSg/x SINE Alu 104 288 -22 912 224 0 0 chr1 27706085 27706250 -214958103 + FRAM SINE Alu 2 166 0 1728 201 48 30 chr1 27706273 27706682 -214957671 + L1M4 LINE L1 3804 4223 -1923 2086 98 7 23 chr1 27706682 27706987 -214957366 + AluSx SINE Alu 1 300 -12 1728 201 48 30 chr1 27706987 27707039 -214957314 + L1M4 LINE L1 4223 4273 -1873 2338 97 0 0 chr1 27707046 27707354 -214956999 + AluSg SINE Alu 1 308 -2 415 111 111 0 chr1 27707598 27707670 -214956683 + MER116 DNA Mariner 1 80 0 2370 80 5 80 chr1 27707861 27708247 -214956106 + L1PA14 LINE L1 5804 6160 -1 2177 117 0 0 chr1 27708362 27708670 -214955683 - AluSx SINE Alu -4 308 1 537 284 57 0 chr1 27709057 27709198 -214955155 + MIR3 SINE MIR 17 165 -43 942 209 60 60 chr1 27709206 27709419 -214954934 - L1MC4 LINE L1 -13 8029 7814 2567 42 0 3 chr1 27709419 27709731 -214954622 + AluY SINE Alu 1 311 0 942 209 60 60 chr1 27709731 27709848 -214954505 - L1MC4 LINE L1 -227 7815 7699 1382 177 26 15 chr1 27709861 27710127 -214954226 - AluJo SINE Alu -30 282 14 2200 207 123 6 chr1 27710157 27710702 -214953651 - L1MC4 LINE L1 -365 7677 7069 2179 103 0 13 chr1 27711340 27711651 -214952702 - AluSg SINE Alu -1 309 3 2156 78 3 68 chr1 27711659 27711980 -214952373 - AluSp SINE Alu -13 300 1 1502 158 10 45 chr1 27712000 27712291 -214952062 - AluJo SINE Alu -31 281 1 1986 111 3 7 chr1 27712339 27712637 -214951716 + AluY SINE Alu 2 298 -13 1430 80 5 0 chr1 27712639 27712827 -214951526 + AluSp SINE Alu 1 189 -124 1239 99 0 0 chr1 27712827 27712998 -214951355 + AluSp SINE Alu 138 308 -5 704 199 77 13 chr1 27713001 27713157 -214951196 + AluJo/FRAM SINE Alu 137 302 0 379 170 0 39 chr1 27713422 27713651 -214950702 + AluJo SINE Alu 1 302 0 2363 43 7 0 chr1 27713849 27714149 -214950204 + AluY SINE Alu 1 302 -9 2182 104 0 0 chr1 27714237 27714534 -214949819 + AluSx SINE Alu 1 297 -15 608 194 8 22 chr1 27714552 27714686 -214949667 + MER103 DNA DNA 32 163 -3 1793 142 0 4 chr1 27714810 27715085 -214949268 + AluSg SINE Alu 5 278 -32 183 42 0 0 chr1 27715085 27715109 -214949244 + (TAA)n Simple_repeat Simple_repeat 1 24 0 264 274 0 29 chr1 27715123 27715151 -214949202 + GA-rich Low_complexity Low_complexity 1 28 -71 2065 120 3 0 chr1 27715151 27715460 -214948893 + AluSx SINE Alu 1 310 -2 264 274 0 29 chr1 27715460 27715533 -214948820 + GA-rich Low_complexity Low_complexity 28 99 0 189 0 0 0 chr1 27715702 27715723 -214948630 + (TTTAA)n Simple_repeat Simple_repeat 4 24 0 2099 112 0 0 chr1 27715724 27716019 -214948334 - AluSx SINE Alu -17 295 1 189 234 43 0 chr1 27716127 27716174 -214948179 - MIR3 SINE MIR -3 205 157 369 0 0 0 chr1 27716367 27716408 -214947945 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1954 120 0 0 chr1 27716418 27716692 -214947661 - AluSx SINE Alu -38 274 1 214 391 20 20 chr1 27716697 27716848 -214947505 - L2 LINE L2 -228 3044 2894 355 81 0 32 chr1 27717604 27717666 -214946687 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1835 137 38 7 chr1 27717666 27717958 -214946395 - AluSx SINE Alu -11 301 1 488 286 100 75 chr1 27717985 27718252 -214946101 + L1MEc LINE L1 1053 1312 -5322 2225 97 0 3 chr1 27718252 27718552 -214945801 + AluSq SINE Alu 1 299 -14 488 286 100 75 chr1 27718552 27718722 -214945631 + L1MEc LINE L1 1312 1607 -5027 864 127 0 8 chr1 27718811 27718937 -214945416 + AluJo/FLAM SINE Alu 2 126 -176 429 153 42 0 chr1 27718937 27719009 -214945344 + AluJ/FRAM SINE Alu 225 299 -13 496 271 72 18 chr1 27719094 27719260 -214945093 - L1ME LINE L1 -459 5662 5488 4313 153 38 73 chr1 27719309 27719415 -214944938 + L1MB4 LINE L1 4779 4887 -1293 1576 150 97 4 chr1 27719415 27719682 -214944671 + AluJb SINE Alu 1 292 -20 4313 153 38 73 chr1 27719682 27719943 -214944410 + L1MB4 LINE L1 4887 5156 -1024 1262 163 123 47 chr1 27719943 27720220 -214944133 + AluJo SINE Alu 5 302 0 4313 153 38 73 chr1 27720220 27720418 -214943935 + L1MB4 LINE L1 5156 5360 -820 2320 84 3 3 chr1 27720418 27720728 -214943625 + AluSx SINE Alu 1 310 -2 4313 153 38 73 chr1 27720728 27721013 -214943340 + L1MB4 LINE L1 5360 5654 -526 611 90 0 0 chr1 27721013 27721091 -214943262 - MADE1 DNA Mariner -2 78 1 4313 153 38 73 chr1 27721091 27721195 -214943158 + L1MB4 LINE L1 5654 5760 -420 1991 134 3 19 chr1 27721195 27721509 -214942844 - AluSx SINE Alu -3 309 1 4313 153 38 73 chr1 27721509 27721650 -214942703 + L1MB4 LINE L1 5760 5905 -275 2021 120 0 13 chr1 27721650 27721786 -214942567 + AluSx SINE Alu 1 137 -175 1971 118 52 0 chr1 27721786 27722073 -214942280 + AluSx SINE Alu 1 302 -10 2021 120 0 13 chr1 27722073 27722235 -214942118 + AluSx SINE Alu 137 295 -17 1885 131 3 38 chr1 27722240 27722553 -214941800 + AluSx SINE Alu 11 312 0 4313 153 38 73 chr1 27722553 27722746 -214941607 + L1MB4 LINE L1 5909 6025 -155 1664 185 0 35 chr1 27722746 27723060 -214941293 - AluJb SINE Alu -9 303 1 4313 153 38 73 chr1 27723060 27723172 -214941181 + L1MB4 LINE L1 6025 6139 -41 2221 90 0 7 chr1 27723174 27723474 -214940879 + AluSq SINE Alu 1 298 -15 789 88 9 0 chr1 27723484 27723598 -214940755 + AluSc SINE Alu 174 288 -21 21 57 0 0 chr1 27923610 27923645 -214740708 + AT_rich Low_complexity Low_complexity 1 35 0 1933 122 20 7 chr1 27923679 27923982 -214740371 + AluSx SINE Alu 6 312 0 338 0 24 0 chr1 27924014 27924056 -214740297 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 526 307 40 0 chr1 27924207 27924383 -214739970 - MIR SINE MIR -71 191 9 2095 122 0 0 chr1 27924414 27924710 -214739643 - AluY SINE Alu -14 297 2 220 297 182 0 chr1 27924913 27925061 -214739292 - L2 LINE L2 -829 2485 2311 2320 94 3 0 chr1 27925373 27925681 -214738672 - AluSx SINE Alu -3 309 1 595 265 213 9 chr1 27925728 27925939 -214738414 + MIR SINE MIR 6 259 -3 1602 157 14 31 chr1 27926139 27926433 -214737920 + AluJo SINE Alu 11 299 -13 606 245 44 13 chr1 27926433 27926592 -214737761 - MIR SINE MIR -79 183 20 2334 90 3 0 chr1 27926634 27926945 -214737408 + AluSp SINE Alu 1 312 -1 314 299 17 26 chr1 27927405 27927522 -214736831 - MIR SINE MIR -55 153 38 394 273 9 18 chr1 27927532 27927642 -214736711 + MIR SINE MIR 34 142 -120 477 0 0 0 chr1 27927708 27927761 -214736592 + (CA)n Simple_repeat Simple_repeat 2 54 0 212 295 89 18 chr1 27928003 27928115 -214736238 + L2 LINE L2 3153 3272 0 421 285 8 16 chr1 27928193 27928316 -214736037 + MIR SINE MIR 19 140 -68 * 673 232 378 0 chr1 27928314 27928506 -214735847 - L2 LINE L2 -264 3049 2931 2055 127 3 0 chr1 27928506 27928805 -214735548 - AluSg SINE Alu -10 300 1 673 232 378 0 chr1 27928805 27929034 -214735319 - L2 LINE L2 -382 2931 2462 501 268 106 11 chr1 27929041 27929410 -214734943 - MLT1H LTR MaLR 0 549 108 200 136 0 45 chr1 27929640 27929684 -214734669 + (GGGTG)n Simple_repeat Simple_repeat 3 44 0 215 295 155 16 chr1 27929718 27929847 -214734506 - L2 LINE L2 -24 3248 3102 250 281 0 0 chr1 27930052 27930116 -214734237 - MIR SINE MIR -112 150 87 2018 118 13 7 chr1 27931434 27931740 -214732613 + AluSx SINE Alu 1 308 -4 1187 113 0 32 chr1 27931742 27931928 -214732425 + AluSg/x SINE Alu 127 306 -6 312 286 20 41 chr1 27932563 27932661 -214731692 - L1MC4 LINE L1 -1339 6703 6608 2121 64 0 0 chr1 27932674 27932938 -214731415 + AluY SINE Alu 4 267 -44 1767 135 10 7 chr1 27933090 27933379 -214730974 - AluSc SINE Alu -14 295 6 2141 116 0 3 chr1 27933385 27933687 -214730666 - AluSx SINE Alu -11 301 1 765 221 159 0 chr1 27933999 27934225 -214730128 + L2 LINE L2 2100 2361 -953 2147 90 13 7 chr1 27934376 27934675 -214729678 - AluSq SINE Alu -12 301 1 246 62 0 0 chr1 27934684 27934716 -214729637 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 2269 88 0 0 chr1 27934724 27935021 -214729332 + AluSx SINE Alu 1 297 -15 271 262 166 28 chr1 27935021 27935157 -214729196 - MER112 DNA MER1_type -90 170 12 2229 121 95 67 chr1 27935312 27935658 -214728695 + LTR47A LTR ERVL 1 364 -88 1931 87 0 4 chr1 27935658 27936007 -214728346 - AluSq SINE Alu 0 379 32 2229 121 95 67 chr1 27936007 27936089 -214728264 + LTR47A LTR ERVL 364 442 -10 231 358 46 0 chr1 27936295 27936404 -214727949 + L2 LINE L2 2898 3011 -302 662 269 35 15 chr1 27936404 27936601 -214727752 - MLT1K LTR MaLR -69 519 319 1446 118 0 0 chr1 27936623 27936827 -214727526 + AluSg1 SINE Alu 1 204 -105 424 300 0 52 chr1 27936852 27936981 -214727372 - MLT1K LTR MaLR -289 299 165 2299 74 24 0 chr1 27936981 27937279 -214727074 + AluSp SINE Alu 1 305 -8 424 300 0 52 chr1 27937279 27937394 -214726959 - MLT1K LTR MaLR -423 165 2 495 307 89 6 chr1 27937461 27937640 -214726713 + L2 LINE L2 3119 3312 -1 875 187 6 16 chr1 27937684 27937866 -214726487 - AluJb SINE Alu -1 311 132 1847 93 108 4 chr1 27937887 27938156 -214726197 + AluSx SINE Alu 1 297 -15 1960 133 14 0 chr1 27938163 27938457 -214725896 + AluSx SINE Alu 1 298 -14 2433 56 0 3 chr1 27938900 27939202 -214725151 - AluY SINE Alu -10 301 1 803 149 8 0 chr1 27939413 27939534 -214724819 - FLAM_C SINE Alu -19 124 3 972 278 141 29 chr1 27939534 27940208 -214724145 + L2 LINE L2 2345 3093 -220 443 233 101 57 chr1 27940220 27940379 -214723974 + MIR SINE MIR 28 193 -69 2210 40 44 0 chr1 27940403 27940743 -214723610 + AluY SINE Alu 1 352 0 814 110 34 0 chr1 27940780 27940898 -214723455 - AluJo SINE Alu -21 291 170 870 186 41 52 chr1 27941001 27941195 -214723158 - AluJo SINE Alu -119 193 2 1037 164 19 0 chr1 27941214 27941373 -214722980 - FRAM SINE Alu -4 162 1 453 256 8 41 chr1 27941446 27941567 -214722786 + L2 LINE L2 3196 3312 -1 2159 80 19 32 chr1 27941675 27941988 -214722365 + AluSx SINE Alu 1 309 -3 1721 162 3 7 chr1 27942922 27943212 -214721141 - AluJb SINE Alu -23 289 1 309 258 226 0 chr1 27943220 27943313 -214721040 - MIR SINE MIR -62 146 33 2111 116 0 19 chr1 27943319 27943629 -214720724 - AluSg SINE Alu -4 306 3 2150 116 7 3 chr1 27943825 27944128 -214720225 - AluSx SINE Alu -6 306 3 1939 146 0 13 chr1 27944141 27944456 -214719897 - AluSx SINE Alu -1 311 1 1893 151 0 3 chr1 27944459 27944758 -214719595 - AluSx SINE Alu -11 301 4 1642 180 17 3 chr1 27944759 27945059 -214719294 - AluJb SINE Alu -8 304 1 771 216 119 16 chr1 27945083 27945277 -214719076 + L1MC4 LINE L1 6766 6979 -1063 1633 164 7 17 chr1 27945330 27945622 -214718731 - AluJo SINE Alu -14 298 10 344 159 43 0 chr1 27945632 27945701 -214718652 + MER69 DNA AcHobo 2453 2524 -2 619 175 58 0 chr1 27945706 27945826 -214718527 - MIR SINE MIR -109 153 27 230 351 147 11 chr1 27945978 27946169 -214718184 - MIR SINE MIR -25 237 21 244 284 136 0 chr1 27946473 27946561 -214717792 + MIR SINE MIR 23 122 -140 180 212 0 0 chr1 27946610 27946643 -214717710 + MIR SINE MIR 218 250 -12 366 224 0 0 chr1 27946648 27946715 -214717638 + L1MC4 LINE L1 6637 6703 -1339 * 380 276 23 0 chr1 27946675 27946762 -214717591 - L1MC4 LINE L1 -1339 6703 6615 2052 128 0 0 chr1 27946762 27947051 -214717302 - AluSx SINE Alu -23 289 1 425 292 124 0 chr1 27948392 27948431 -214715922 - MIR SINE MIR -46 216 183 2130 102 0 13 chr1 27948431 27948735 -214715618 - AluSx SINE Alu -12 300 1 425 292 124 0 chr1 27948735 27948880 -214715473 - MIR SINE MIR -79 183 9 1095 212 68 24 chr1 27949196 27949446 -214714907 - MIR SINE MIR 0 262 2 1640 151 6 63 chr1 27952328 27952461 -214711892 + AluJo SINE Alu 11 150 -162 2210 103 0 0 chr1 27952461 27952761 -214711592 + AluSx SINE Alu 1 300 -12 1537 103 66 4 chr1 27952764 27953006 -214711347 + AluSg1 SINE Alu 53 309 0 1640 151 6 63 chr1 27953006 27953186 -214711167 + AluJo SINE Alu 152 310 -2 2320 88 0 0 chr1 27953543 27953839 -214710514 - AluSq SINE Alu -17 296 1 493 350 111 37 chr1 27954236 27954668 -214709685 - L2 LINE L2 0 3272 2809 2364 76 0 0 chr1 27954847 27955168 -214709185 - AluY SINE Alu 0 321 1 248 206 151 111 chr1 27955173 27955271 -214709082 - MIR SINE MIR -10 252 146 1846 139 20 14 chr1 27955271 27955432 -214708921 - AluSx SINE Alu -15 297 132 1970 97 13 13 chr1 27955432 27955740 -214708613 - AluSp SINE Alu -5 308 1 1846 139 20 14 chr1 27955740 27955873 -214708480 - AluSx SINE Alu -180 132 1 248 206 151 111 chr1 27955873 27955900 -214708453 - MIR SINE MIR -116 146 122 636 302 42 31 chr1 27955901 27956189 -214708164 + MER34 LTR ERV1 3 293 -249 2281 63 0 3 chr1 27956290 27956574 -214707779 + AluSq SINE Alu 14 296 -17 2369 69 0 3 chr1 27956574 27956878 -214707475 + AluY SINE Alu 1 303 -8 2214 103 0 3 chr1 27957027 27957328 -214707025 - AluSg SINE Alu -10 300 1 237 342 0 13 chr1 27957376 27957452 -214706901 + MIR SINE MIR 31 105 -157 2004 137 7 3 chr1 27957474 27957780 -214706573 + AluSx SINE Alu 5 311 -1 249 283 0 0 chr1 27958132 27958192 -214706161 + L2 LINE L2 3211 3270 -2 * 406 268 150 0 chr1 27958190 27958317 -214706036 - MIR SINE MIR 0 262 117 1174 139 5 60 chr1 27958331 27958547 -214705806 + AluJo SINE Alu 12 215 -97 1004 115 39 6 chr1 27958671 27958827 -214705526 + AluJb SINE Alu 132 292 -20 665 185 28 139 chr1 27958839 27958945 -214705408 - MLT1E LTR MaLR -398 195 79 2210 93 7 3 chr1 27958945 27959247 -214705106 + AluSq SINE Alu 2 304 -9 2480 71 3 0 chr1 27959248 27959559 -214704794 + AluSp SINE Alu 1 312 -1 665 185 28 139 chr1 27959559 27959666 -214704687 - MLT1E LTR MaLR -513 80 4 277 266 128 0 chr1 27959673 27959782 -214704571 + L1M4 LINE L1 3474 3596 -2550 284 277 0 0 chr1 27959829 27959894 -214704459 - L1ME LINE L1 -521 5600 5536 299 255 7 72 chr1 27959918 27960071 -214704282 - L1MC4 LINE L1 -5 8037 7895 275 121 241 0 chr1 27960080 27960138 -214704215 - L1ME2 LINE L1 -206 5958 5887 1252 102 0 6 chr1 27960140 27960317 -214704036 - AluSg/x SINE Alu 0 310 135 1159 211 71 20 chr1 27960318 27960612 -214703741 - L1ME2 LINE L1 -275 5889 5581 541 221 0 0 chr1 27960612 27960716 -214703637 + FLAM_C SINE Alu 39 142 -1 275 211 9 37 chr1 27960733 27960842 -214703511 + GA-rich Low_complexity Low_complexity 3 108 0 1037 229 21 21 chr1 27960850 27961130 -214703223 - L1ME2 LINE L1 -617 5547 5268 1096 161 37 155 chr1 27961133 27961487 -214702866 + AluYb8 SINE Alu 1 312 -6 2297 92 0 3 chr1 27961558 27961861 -214702492 - AluSx SINE Alu -10 302 1 1606 100 9 0 chr1 27961998 27962227 -214702126 + AluSg/x SINE Alu 82 312 0 370 183 37 0 chr1 27962229 27962311 -214702042 - L1ME2 LINE L1 -1053 5093 5009 287 269 29 39 chr1 27962311 27962335 -214702018 - MIR SINE MIR -78 184 161 2040 100 17 0 chr1 27962335 27962624 -214701729 + AluSx SINE Alu 1 294 -18 287 269 29 39 chr1 27962624 27962703 -214701650 - MIR SINE MIR -101 161 82 395 296 155 54 chr1 27963136 27963504 -214700849 - MERVL LTR ERVL -462 5302 4898 388 283 102 97 chr1 27963507 27963572 -214700781 - MERVL LTR ERVL -878 4776 4713 1729 164 11 3 chr1 27963572 27963859 -214700494 - AluJo SINE Alu -23 289 1 388 283 102 97 chr1 27963859 27964050 -214700303 - MERVL LTR ERVL -941 4713 4524 2175 125 0 0 chr1 27964050 27964354 -214699999 - AluSx SINE Alu -8 304 1 388 283 102 97 chr1 27964354 27964700 -214699653 - MERVL LTR ERVL -1130 4524 4168 446 215 0 6 chr1 27964711 27964888 -214699465 + (CCTG)n Simple_repeat Simple_repeat 3 178 0 378 239 0 0 chr1 27964904 27965080 -214699273 + (CCTG)n Simple_repeat Simple_repeat 3 178 0 2234 101 7 0 chr1 27965593 27965901 -214698452 - AluSx SINE Alu -1 311 2 376 324 45 28 chr1 27966041 27966288 -214698065 - MERVL LTR ERVL -1684 4080 3830 565 302 88 47 chr1 27967030 27967348 -214697005 - MERVL LTR ERVL -2156 3498 3168 283 317 17 42 chr1 27967656 27967776 -214696577 - MER5A DNA MER1_type -2 187 71 995 124 53 24 chr1 27967781 27967950 -214696403 - FRAM SINE Alu -7 169 1 366 206 29 0 chr1 27967966 27968034 -214696319 + AluS SINE Alu 1 70 -232 206 292 11 56 chr1 27968423 27968512 -214695841 - MIR3 SINE MIR -24 184 100 222 324 49 20 chr1 27968686 27968788 -214695565 + L2 LINE L2 3140 3244 -28 182 366 151 0 chr1 27971089 27971182 -214693171 - MIR3 SINE MIR -21 187 81 2116 63 53 3 chr1 27971239 27971523 -214692830 + AluY SINE Alu 1 298 -13 227 239 34 45 chr1 27971523 27971611 -214692742 + MER34 LTR ERV1 427 513 -29 596 246 0 0 chr1 27971648 27971762 -214692591 - MIR SINE MIR -141 121 8 827 188 0 0 chr1 27971785 27971939 -214692414 + FRAM SINE Alu 1 153 -23 1172 146 13 53 chr1 27971954 27972180 -214692173 + AluSg SINE Alu 49 265 -45 1251 92 6 0 chr1 27972269 27972433 -214691920 - AluSp SINE Alu -148 165 1 272 150 0 0 chr1 27972433 27972473 -214691880 - Alu SINE Alu -268 40 1 765 181 25 12 chr1 27972769 27972929 -214691424 + MER5A DNA MER1_type 10 171 -18 1361 176 112 7 chr1 27973005 27973065 -214691288 - AluJb SINE Alu -5 307 1 1396 165 5 9 chr1 27973065 27973283 -214691070 - AluJb SINE Alu -95 217 1 1165 333 9 73 chr1 27973310 27973625 -214690728 + AluSx SINE Alu 1 295 -7 292 260 0 0 chr1 27973761 27973834 -214690519 + MIR SINE MIR 79 151 -111 363 283 145 0 chr1 27974619 27974757 -214689596 + MER5A DNA MER1_type 26 183 -6 2200 62 0 69 chr1 27974803 27975109 -214689244 + AluSc SINE Alu 6 290 -19 851 120 0 0 chr1 27975520 27975653 -214688700 + FLAM_C SINE Alu 1 133 0 257 180 0 16 chr1 27975659 27975720 -214688633 + GA-rich Low_complexity Low_complexity 2 61 0 271 237 9 105 chr1 27976122 27976236 -214688117 + LTR37A LTR ERV1 83 185 -241 611 165 22 3 chr1 27976238 27976386 -214687967 + LTR37A LTR ERV1 289 420 -6 259 236 0 0 chr1 27976682 27976737 -214687616 + MIR SINE MIR 95 149 -113 608 198 15 99 chr1 27977348 27977470 -214686883 - MIR SINE MIR -12 250 119 2285 93 3 0 chr1 27977470 27977761 -214686592 + AluSx SINE Alu 1 292 -20 2232 112 3 3 chr1 27977762 27978057 -214686296 + AluSq SINE Alu 3 297 -16 608 198 15 99 chr1 27978057 27978134 -214686219 - MIR SINE MIR -142 120 66 2168 108 7 29 chr1 27978238 27978565 -214685788 + AluSq SINE Alu 1 313 0 265 132 0 0 chr1 27978565 27978603 -214685750 + AluSq SINE Alu 134 171 -132 538 301 74 9 chr1 27978632 27978848 -214685505 + L2 LINE L2 3082 3311 -2 22 0 0 0 chr1 27979273 27979295 -214685058 + AT_rich Low_complexity Low_complexity 1 22 0 2229 110 3 7 chr1 27979329 27979638 -214684715 - AluSq SINE Alu -5 308 1 205 208 125 0 chr1 27979932 27979980 -214684373 - MIR SINE MIR -65 143 90 2313 115 3 0 chr1 27980029 27980333 -214684020 + AluSx SINE Alu 1 305 -7 465 318 60 0 chr1 27980426 27980577 -214683776 + MIR SINE MIR 47 206 -56 367 308 0 39 chr1 27980808 27980938 -214683415 - L2 LINE L2 -1 3271 3147 2506 79 0 0 chr1 27980976 27981279 -214683074 + AluY SINE Alu 2 304 -7 399 227 73 9 chr1 27981292 27981402 -214682951 - LTR16A LTR ERVL -188 262 146 266 324 140 0 chr1 27981594 27981773 -214682580 - L2 LINE L2 -556 2758 2555 464 283 0 0 chr1 27981974 27982087 -214682266 - LTR16A LTR ERVL -148 302 190 182 235 0 0 chr1 27982208 27982242 -214682111 + MIR SINE MIR 221 254 -8 260 154 31 31 chr1 27982580 27982645 -214681708 - LTR33A LTR ERVL -9 514 450 366 179 317 16 chr1 27982984 27983059 -214681294 - MIR SINE MIR 0 262 211 2382 112 0 0 chr1 27983059 27983372 -214680981 - AluSq SINE Alu 0 313 1 366 179 317 16 chr1 27983372 27983419 -214680934 - MIR SINE MIR -51 211 103 438 303 49 0 chr1 27984100 27984242 -214680111 + MIR SINE MIR 81 229 -33 2099 117 4 0 chr1 27984296 27984627 -214679726 + AluSx SINE Alu 1 332 0 789 226 74 18 chr1 27984627 27984844 -214679509 - MIR SINE MIR -14 248 20 1803 61 0 73 chr1 27985427 27985672 -214678681 - AluSg/x SINE Alu -1 311 85 453 293 172 23 chr1 27986400 27986748 -214677605 - L2 LINE L2 -84 3229 2830 2433 92 0 7 chr1 27986811 27987116 -214677237 + AluSx SINE Alu 1 303 -9 2233 119 3 22 chr1 27987177 27987496 -214676857 + AluSq SINE Alu 1 313 0 624 249 91 0 chr1 27987503 27987668 -214676685 - L2 LINE L2 -1389 1925 1746 2067 145 7 0 chr1 27987668 27987978 -214676375 + AluSx SINE Alu 1 312 0 505 245 103 86 chr1 27988103 27988202 -214676151 - L2 LINE L2 -1548 1766 1670 2380 86 3 3 chr1 27988202 27988504 -214675849 - AluSx SINE Alu -10 302 1 1710 156 7 28 chr1 27988509 27988827 -214675526 - AluJo SINE Alu 0 312 1 505 245 103 86 chr1 27988827 27989059 -214675294 - L2 LINE L2 -1647 1667 1422 2382 117 20 30 chr1 27989059 27989280 -214675073 - MER41E LTR ERV1 0 512 295 2382 110 0 3 chr1 27989280 27989590 -214674763 - AluSx SINE Alu -3 309 1 2382 117 20 30 chr1 27989590 27989761 -214674592 - MER41E LTR ERV1 -217 295 124 1285 161 35 16 chr1 27989771 27990075 -214674278 - MER61B LTR ERV1 -28 396 1 787 97 9 0 chr1 27990075 27990187 -214674166 - MER41E LTR ERV1 -385 127 15 1706 244 74 41 chr1 27990254 27990915 -214673438 - L2 LINE L2 -1890 1424 742 454 274 36 63 chr1 27990964 27991142 -214673211 + MIR SINE MIR 18 199 -63 2251 116 0 3 chr1 27991142 27991443 -214672910 + AluSx SINE Alu 1 300 -12 2201 128 3 3 chr1 27991443 27991748 -214672605 + AluSg SINE Alu 1 305 -5 454 274 36 63 chr1 27991748 27991805 -214672548 + MIR SINE MIR 197 247 -15 238 225 135 0 chr1 27991924 27992013 -214672340 - MIR3 SINE MIR -9 199 99 1738 188 11 0 chr1 27992068 27992355 -214671998 + AluJb SINE Alu 1 290 -22 2487 88 3 0 chr1 27992361 27992667 -214671686 + AluSx SINE Alu 1 307 -5 1308 196 71 25 chr1 27992682 27992962 -214671391 + AluJo SINE Alu 4 296 -16 1996 144 23 3 chr1 27992964 27993270 -214671083 + AluSx SINE Alu 1 312 0 2355 92 3 10 chr1 27993696 27994001 -214670352 + AluSg SINE Alu 2 304 -6 267 275 73 9 chr1 27994088 27994152 -214670201 + MIR3 SINE MIR 90 165 -43 2205 106 0 23 chr1 27994152 27994453 -214669900 + AluSx SINE Alu 1 294 -18 267 275 73 9 chr1 27994453 27994497 -214669856 + MIR3 SINE MIR 165 205 -3 716 156 16 0 chr1 27994791 27994913 -214669440 + AluJb SINE Alu 2 125 -187 2026 120 46 0 chr1 27994943 27995226 -214669127 + AluSx SINE Alu 1 296 -16 338 229 124 57 chr1 27995226 27995331 -214669022 + L2 LINE L2 3202 3313 0 612 259 49 16 chr1 27995400 27995585 -214668768 + MIR SINE MIR 13 203 -59 2334 203 14 32 chr1 27995690 27995801 -214668552 - MLT1F LTR MaLR -59 483 371 2274 106 7 0 chr1 27995801 27996094 -214668259 + AluSx SINE Alu 1 295 -17 2334 203 14 32 chr1 27996094 27996474 -214667879 - MLT1F LTR MaLR -171 371 1 995 31 78 0 chr1 27996556 27996685 -214667668 + MER85 DNA T2_type 1 139 0 2005 86 13 70 chr1 27997083 27997397 -214666956 + AluSx SINE Alu 1 296 -16 239 186 14 43 chr1 27997586 27997656 -214666697 - MLT1K LTR MaLR -339 249 182 2595 68 3 0 chr1 27997885 27998196 -214666157 + AluSq SINE Alu 1 312 -1 1185 102 57 23 chr1 27998326 27998343 -214666010 + AluSg/x SINE Alu 120 135 -177 2153 136 0 3 chr1 27998343 27998653 -214665700 + AluJb SINE Alu 1 309 -3 1185 102 57 23 chr1 27998653 27998811 -214665542 + AluSg/x SINE Alu 135 301 -11 264 320 0 0 chr1 27998813 27998888 -214665465 + MER5A DNA MER1_type 109 183 -6 183 184 0 0 chr1 27999114 27999152 -214665201 + T-rich Low_complexity Low_complexity 5 42 0 26 30 0 0 chr1 27999169 27999202 -214665151 + AT_rich Low_complexity Low_complexity 1 33 0 660 258 148 32 chr1 27999399 27999837 -214664516 + MLT1H LTR MaLR 19 549 0 234 171 110 24 chr1 27999913 27999995 -214664358 - MLT1J LTR MaLR -20 491 403 2003 142 0 36 chr1 28000052 28000197 -214664156 + AluJb SINE Alu 1 132 -180 2265 90 0 0 chr1 28000197 28000502 -214663851 + AluSg1 SINE Alu 1 305 0 2003 142 0 36 chr1 28000502 28000664 -214663689 + AluJb SINE Alu 132 298 -14 2259 96 0 14 chr1 28000812 28001136 -214663217 - AluSp SINE Alu 0 313 1 272 219 0 0 chr1 28001136 28001200 -214663153 + MLT1F1 LTR MaLR 500 563 -4 3965 95 97 3 chr1 28001491 28002080 -214662273 + LTR9B LTR ERV1 1 644 0 265 159 0 0 chr1 28002363 28002407 -214661946 + MSTC LTR MaLR 1 44 -384 353 333 0 0 chr1 28002437 28002527 -214661826 + L1MC4 LINE L1 6614 6703 -1339 2582 59 0 3 chr1 28002530 28002833 -214661520 - AluY SINE Alu -9 302 1 1891 169 0 3 chr1 28002834 28003129 -214661224 - AluJb SINE Alu -18 294 1 2318 158 16 0 chr1 28003130 28003517 -214660836 + MSTC LTR MaLR 36 428 0 2141 109 0 0 chr1 28004455 28004730 -214659623 + AluSx SINE Alu 3 277 -35 268 301 65 11 chr1 28005169 28005262 -214659091 + MIR SINE MIR 98 195 -67 326 296 134 43 chr1 28005270 28005456 -214658897 + MIR SINE MIR 9 211 -51 677 202 90 28 chr1 28005531 28005558 -214658795 + MIR SINE MIR 3 27 -235 2226 101 21 0 chr1 28005558 28005845 -214658508 + AluSg SINE Alu 3 295 -15 677 202 90 28 chr1 28005845 28005995 -214658358 + MIR SINE MIR 27 191 -71 785 263 93 32 chr1 28009404 28009610 -214654743 - L2 LINE L2 -32 3281 3048 2456 99 0 0 chr1 28009610 28009912 -214654441 + AluSx SINE Alu 1 302 -10 785 263 93 32 chr1 28009912 28010017 -214654336 - L2 LINE L2 -265 3048 2951 255 318 52 19 chr1 28010144 28010298 -214654055 - MIR SINE MIR 0 262 104 2302 66 4 0 chr1 28010485 28010757 -214653596 - AluSg SINE Alu -12 298 26 1163 121 24 0 chr1 28010868 28011057 -214653296 - AluSg/x SINE Alu 0 305 113 2274 119 0 7 chr1 28012075 28012410 -214651943 - AluSx SINE Alu 0 312 1 273 356 0 29 chr1 28013071 28013199 -214651154 - MIR SINE MIR -65 143 27 2179 120 13 10 chr1 28013199 28013508 -214650845 - AluSq SINE Alu -1 312 3 273 356 0 29 chr1 28013508 28013521 -214650832 - MIR SINE MIR -181 27 15 201 176 0 0 chr1 28013521 28013555 -214650798 + T-rich Low_complexity Low_complexity 1 34 0 1505 91 0 0 chr1 28013580 28013766 -214650587 + AluSg/x SINE Alu 117 302 -10 1599 180 25 11 chr1 28013770 28014048 -214650305 - AluJo SINE Alu -30 282 1 2006 140 3 17 chr1 28014050 28014350 -214650003 - AluJb SINE Alu -15 297 2 388 130 0 43 chr1 28014591 28014660 -214649693 + Alu SINE Alu 237 302 0 914 298 53 14 chr1 28014674 28015087 -214649266 + L1ME LINE L1 5338 5766 -404 2251 92 3 0 chr1 28015087 28015370 -214648983 + AluSp SINE Alu 29 312 -1 1591 120 152 4 chr1 28015383 28015633 -214648720 + AluJb SINE Alu 1 287 -25 2142 118 44 25 chr1 28015651 28015717 -214648636 - MER41E LTR ERV1 -142 370 307 2464 89 3 0 chr1 28015717 28016021 -214648332 - AluSq SINE Alu -8 305 1 2142 118 44 25 chr1 28016021 28016317 -214648036 - MER41E LTR ERV1 -205 307 1 1479 219 159 102 chr1 28016398 28017305 -214647048 - L2 LINE L2 -1 3312 2458 443 158 0 49 chr1 28017305 28017430 -214646923 + AluSg/x SINE Alu 205 325 0 1479 219 159 102 chr1 28017430 28017639 -214646714 - L2 LINE L2 -855 2458 2262 2040 131 7 7 chr1 28017639 28017937 -214646416 + AluSx SINE Alu 3 300 -12 1479 219 159 102 chr1 28017937 28017962 -214646391 - L2 LINE L2 -1051 2262 2240 2236 126 0 0 chr1 28017962 28018264 -214646089 + AluSx SINE Alu 1 302 -10 1479 219 159 102 chr1 28018264 28018345 -214646008 - L2 LINE L2 -1073 2240 1923 2177 138 79 3 chr1 28018345 28018780 -214645573 + L1M4 LINE L1 5211 5669 -509 2273 111 3 0 chr1 28018782 28019079 -214645274 + AluSx SINE Alu 1 298 -14 1212 85 24 0 chr1 28019108 28019272 -214645081 + AluY SINE Alu 2 169 -142 1102 164 36 41 chr1 28019380 28019529 -214644824 + MLT1E1 LTR MaLR 436 584 -70 284 0 28 0 chr1 28019529 28019565 -214644788 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2245 98 7 0 chr1 28019567 28019844 -214644509 - AluSx SINE Alu -32 280 2 1102 164 36 41 chr1 28019844 28019911 -214644442 + MLT1E1 LTR MaLR 585 654 0 335 342 107 55 chr1 28019972 28020063 -214644290 - L2 LINE L2 -1638 1676 1591 1639 159 39 39 chr1 28020063 28020371 -214643982 + AluJo SINE Alu 1 308 -4 335 342 107 55 chr1 28020371 28020974 -214643379 - L2 LINE L2 -1723 1591 946 847 262 129 36 chr1 28021010 28021476 -214642877 - MLT1J LTR MaLR -2 509 1 317 278 20 66 chr1 28021525 28021676 -214642677 - L1ME LINE L1 -344 5777 5634 475 353 43 30 chr1 28021833 28022162 -214642191 + L1MEd LINE L1 337 669 -5450 2495 70 3 0 chr1 28022208 28022507 -214641846 + AluSp SINE Alu 1 300 -13 2210 113 0 0 chr1 28022522 28022815 -214641538 + AluSg SINE Alu 1 293 -17 373 209 19 38 chr1 28022898 28023031 -214641322 + L1M4 LINE L1 5176 5307 -839 2237 106 0 7 chr1 28023031 28023332 -214641021 + AluSc SINE Alu 3 301 -8 373 209 19 38 chr1 28023332 28023356 -214640997 + L1M4 LINE L1 5307 5330 -816 1461 169 0 8 chr1 28023360 28023603 -214640750 + AluJb SINE Alu 18 258 -54 542 302 86 59 chr1 28023705 28024030 -214640323 + LTR33 LTR ERVL 67 382 -139 1787 134 4 0 chr1 28024030 28024292 -214640061 - AluSx SINE Alu -49 263 1 542 302 86 59 chr1 28024292 28024338 -214640015 + LTR33 LTR ERVL 382 425 -96 1710 151 39 7 chr1 28024338 28024622 -214639731 - AluJo SINE Alu -19 293 1 542 302 86 59 chr1 28024622 28024690 -214639663 + LTR33 LTR ERVL 425 519 -2 1570 100 0 0 chr1 28026314 28026524 -214637829 - AluSq SINE Alu -14 299 90 524 269 67 21 chr1 28026842 28027020 -214637333 + MIR SINE MIR 64 249 -13 937 94 23 0 chr1 28027485 28027613 -214636740 - AluY SINE Alu -180 131 1 1917 101 77 3 chr1 28028374 28028660 -214635693 - AluSx SINE Alu -5 307 1 2155 114 3 0 chr1 28029785 28030092 -214634261 + AluSp SINE Alu 1 308 -5 21 36 0 0 chr1 28031259 28031287 -214633066 + GC_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr1 28031887 28031925 -214632428 + GC_rich Low_complexity Low_complexity 1 38 0 27 81 0 0 chr1 28032136 28032198 -214632155 + GC_rich Low_complexity Low_complexity 1 62 0 218 296 0 31 chr1 28032273 28032371 -214631982 + G-rich Low_complexity Low_complexity 5 99 0 30 0 0 0 chr1 28032620 28032650 -214631703 + GC_rich Low_complexity Low_complexity 1 30 0 204 307 79 10 chr1 28032848 28032949 -214631404 - MIR3 SINE MIR -98 110 3 * 219 286 24 71 chr1 28032949 28032998 -214631355 + MIR3 SINE MIR 90 132 -76 2292 82 0 7 chr1 28033274 28033578 -214630775 + AluSx SINE Alu 1 302 -10 1978 108 33 10 chr1 28033628 28033933 -214630420 + AluSx SINE Alu 1 312 0 203 363 0 17 chr1 28033933 28034023 -214630330 - MIR SINE MIR -77 131 44 200 246 43 14 chr1 28035152 28035221 -214629132 + MIR SINE MIR 36 106 -156 421 324 41 6 chr1 28035278 28035448 -214628905 - MIR SINE MIR -79 183 8 260 227 23 45 chr1 28035551 28035639 -214628714 + L2 LINE L2 3187 3272 0 2171 120 0 16 chr1 28035642 28035778 -214628575 + AluSx SINE Alu 1 138 -174 2080 110 0 10 chr1 28035778 28036096 -214628257 + AluSc SINE Alu 1 309 0 2171 120 0 16 chr1 28036096 28036275 -214628078 + AluSx SINE Alu 138 311 -1 296 24 24 0 chr1 28036291 28036332 -214628021 + (GA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr1 28036353 28036373 -214627980 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 1006 178 28 6 chr1 28036373 28036548 -214627805 + AluSg/x SINE Alu 132 310 0 492 143 0 0 chr1 28036548 28036632 -214627721 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 1819 125 0 0 chr1 28036758 28037014 -214627339 - AluSg SINE Alu -54 256 1 6522 74 14 40 chr1 28037213 28038190 -214626163 - SVA Other Other -2 1384 433 4752 76 68 55 chr1 28038208 28039008 -214625345 - SVA Other Other -520 866 57 378 0 0 0 chr1 28039008 28039050 -214625303 + (GGGAGA)n Simple_repeat Simple_repeat 5 46 0 2240 95 3 0 chr1 28039054 28039348 -214625005 - AluSx SINE Alu -17 295 1 217 154 0 96 chr1 28039621 28039673 -214624680 + MIR SINE MIR 177 223 -39 2165 103 3 0 chr1 28039808 28040098 -214624255 + AluSq SINE Alu 1 291 -22 2132 108 3 13 chr1 28040176 28040491 -214623862 + AluSx SINE Alu 1 312 0 306 244 50 76 chr1 28040698 28040720 -214623633 + L2 LINE L2 2690 2711 -603 1875 155 30 0 chr1 28040720 28041016 -214623337 + AluJo SINE Alu 1 305 -7 306 244 50 76 chr1 28041016 28041112 -214623241 + L2 LINE L2 2711 2805 -509 716 241 71 14 chr1 28041117 28041329 -214623024 + MIR SINE MIR 39 262 0 1359 65 0 6 chr1 28041591 28041760 -214622593 + AluY SINE Alu 1 168 -143 1785 197 71 21 chr1 28041760 28042197 -214622156 - LTR2B LTR ERV1 0 490 32 1043 70 14 0 chr1 28042216 28042358 -214621995 + AluY SINE Alu 165 308 -3 2492 68 0 0 chr1 28042502 28042810 -214621543 + AluY SINE Alu 1 308 -3 1033 73 0 0 chr1 28043713 28043850 -214620503 + AluSg/x SINE Alu 173 309 -1 472 267 149 9 chr1 28044776 28044997 -214619356 + MLT1L LTR MaLR 39 290 -325 908 303 24 1 chr1 28045048 28045303 -214619050 + MIR SINE MIR 2 262 0 318 172 0 0 chr1 28045305 28045363 -214618990 + MLT1L LTR MaLR 335 392 -223 1050 129 10 67 chr1 28045418 28045611 -214618742 - AluJb SINE Alu 0 312 131 2064 93 18 0 chr1 28045630 28045943 -214618410 + AluSx SINE Alu 1 318 0 428 0 19 0 chr1 28046182 28046234 -214618119 + (TG)n Simple_repeat Simple_repeat 2 54 0 1260 161 22 52 chr1 28046235 28046502 -214617851 - AluJo SINE Alu -53 259 1 837 181 0 0 chr1 28046552 28046685 -214617668 - FLAM_A SINE Alu 0 133 1 394 185 0 12 chr1 28046721 28046802 -214617551 - MER116 DNA Mariner 0 80 1 692 275 61 26 chr1 28046820 28047162 -214617191 - L1ME3A LINE L1 -220 5950 5597 203 278 237 0 chr1 28047340 28047437 -214616916 - MIR SINE MIR -57 205 86 283 253 0 36 chr1 28047451 28047534 -214616819 + MIR SINE MIR 90 169 -93 2131 75 4 4 chr1 28047584 28047891 -214616462 - AluSg SINE Alu 0 307 1 419 304 150 20 chr1 28048246 28048493 -214615860 - L2 LINE L2 -2 3270 2992 294 322 81 20 chr1 28049605 28049754 -214614599 - MIR SINE MIR -21 241 84 516 331 35 6 chr1 28049990 28050162 -214614191 + MIR SINE MIR 20 196 -66 212 327 0 0 chr1 28050168 28050223 -214614130 + L2 LINE L2 3225 3279 -34 358 263 122 19 chr1 28050513 28050669 -214613684 + MIR SINE MIR 78 249 -13 322 179 35 172 chr1 28050661 28050736 -214613617 + L2 LINE L2 3189 3273 -40 * 2186 79 13 23 chr1 28050736 28051041 -214613312 + AluSc SINE Alu 1 302 -7 322 179 35 172 chr1 28051041 28051053 -214613300 + L2 LINE L2 3273 3285 -28 1926 114 14 7 chr1 28051053 28051357 -214612996 + AluSx SINE Alu 1 306 0 322 179 35 172 chr1 28051357 28051412 -214612941 + L2 LINE L2 3285 3313 0 302 291 114 46 chr1 28051659 28051896 -214612457 - L2 LINE L2 -24 3248 2996 791 191 79 41 chr1 28051899 28051934 -214612419 - L1MC4 LINE L1 -31 8011 7979 1622 179 6 31 chr1 28051934 28052252 -214612101 + AluJo SINE Alu 1 310 -2 791 191 79 41 chr1 28052252 28052788 -214611565 - L1MC4 LINE L1 -63 7979 7317 252 227 0 118 chr1 28052845 28052964 -214611389 - MIR SINE MIR -74 134 30 2264 92 0 0 chr1 28053199 28053494 -214610859 - AluSg SINE Alu -15 295 1 4288 119 19 34 chr1 28053982 28054011 -214610342 - L1MB3 LINE L1 -14 6169 6141 2175 127 0 0 chr1 28054011 28054310 -214610043 + AluSx SINE Alu 1 299 -13 4288 119 19 34 chr1 28054310 28054557 -214609796 - L1MB3 LINE L1 -42 6141 5892 2035 145 0 0 chr1 28054557 28054860 -214609493 - AluJb SINE Alu -7 305 3 4288 119 19 34 chr1 28054860 28055280 -214609073 - L1MB3 LINE L1 -291 5892 5483 1003 152 147 0 chr1 28055314 28055518 -214608835 + MER46A DNA MER2_type 2 235 -1 2407 86 0 9 chr1 28055521 28055836 -214608517 - AluSx SINE Alu 0 312 1 310 315 90 4 chr1 28058162 28058322 -214606031 - MIR SINE MIR -64 144 14 2288 80 3 16 chr1 28059397 28059709 -214604644 - AluSp SINE Alu -5 308 1 253 161 74 62 chr1 28059767 28059848 -214604505 - MIR SINE MIR -112 150 69 1982 127 0 39 chr1 28060452 28060612 -214603741 - AluSx SINE Alu -16 296 152 2373 77 0 0 chr1 28060612 28060910 -214603443 - AluY SINE Alu -13 298 1 1982 127 0 39 chr1 28060910 28061057 -214603296 - AluSx SINE Alu -160 152 1 2185 103 13 0 chr1 28061664 28061965 -214602388 - AluSx SINE Alu -7 305 1 322 216 148 0 chr1 28061989 28062077 -214602276 - MIR SINE MIR -75 133 33 2075 107 0 4 chr1 28063486 28063766 -214600587 - AluSq SINE Alu -24 289 11 1730 106 12 4 chr1 28063768 28064013 -214600340 - AluSg SINE Alu -63 247 1 1742 144 53 7 chr1 28064038 28064323 -214600030 + AluJb SINE Alu 2 299 -13 1930 76 0 59 chr1 28064341 28064629 -214599724 + AluY SINE Alu 1 271 -40 432 214 24 63 chr1 28064797 28064923 -214599430 + L2 LINE L2 3193 3313 0 1705 157 0 34 chr1 28065029 28065322 -214599031 + AluJo SINE Alu 13 295 -17 233 244 39 13 chr1 28065925 28066003 -214598350 - L2 LINE L2 -23 3290 3211 2316 84 0 0 chr1 28066226 28066522 -214597831 - AluSg1 SINE Alu -12 297 2 378 246 197 0 chr1 28067128 28067270 -214597083 + MIR SINE MIR 43 212 -50 1956 104 25 53 chr1 28067306 28067624 -214596729 + AluSc SINE Alu 1 309 0 1543 107 0 13 chr1 28067627 28067852 -214596501 + AluSc SINE Alu 79 300 -9 2283 88 3 3 chr1 28068035 28068341 -214596012 - AluSp SINE Alu -7 306 1 252 150 0 0 chr1 28068341 28068381 -214595972 - Alu SINE Alu -262 40 1 772 181 25 12 chr1 28068677 28068837 -214595516 + MER5A DNA MER1_type 10 171 -18 1412 173 112 7 chr1 28068913 28069191 -214595162 - AluJb SINE Alu -5 307 1 1791 112 22 77 chr1 28069218 28069530 -214594823 + AluSx SINE Alu 1 295 -17 227 226 75 43 chr1 28069535 28069628 -214594725 + L2 LINE L2 2934 3029 -243 1971 159 13 0 chr1 28070587 28070895 -214593458 + AluJb SINE Alu 1 312 0 1546 162 7 65 chr1 28070955 28071263 -214593090 + AluJb SINE Alu 3 292 -20 1693 252 57 13 chr1 28071266 28071739 -214592614 + MER21B LTR ERV1 308 801 -62 345 176 24 12 chr1 28071764 28071849 -214592504 + L1MC5 LINE L1 7397 7482 -479 24 32 0 0 chr1 28071862 28071893 -214592460 + AT_rich Low_complexity Low_complexity 1 31 0 1839 112 16 70 chr1 28071896 28072046 -214592307 + AluSq SINE Alu 1 158 -155 2439 99 0 0 chr1 28072046 28072359 -214591994 + AluSp SINE Alu 1 313 0 324 0 0 0 chr1 28072363 28072399 -214591954 + (TA)n Simple_repeat Simple_repeat 2 37 0 1839 112 16 70 chr1 28072399 28072557 -214591796 + AluSq SINE Alu 161 297 -16 890 147 0 0 chr1 28072559 28072688 -214591665 - FLAM_C SINE Alu -4 129 1 1949 123 13 19 chr1 28072839 28073157 -214591196 + THE1C LTR MaLR 1 316 -59 485 83 14 0 chr1 28073178 28073250 -214591103 - THE1B LTR MaLR 0 364 292 2457 87 0 3 chr1 28073251 28073562 -214590791 + AluSx SINE Alu 1 310 -2 2509 58 7 0 chr1 28073578 28073872 -214590481 + AluY SINE Alu 1 296 -15 424 119 15 0 chr1 28073872 28073939 -214590414 + THE1C LTR MaLR 307 374 -1 785 94 14 22 chr1 28073939 28074077 -214590276 + THE1C-int LTR MaLR 1444 1580 0 1586 140 80 52 chr1 28074077 28074368 -214589985 + THE1C LTR MaLR 1 305 -70 2194 122 0 0 chr1 28074368 28074662 -214589691 - AluSc SINE Alu -15 294 1 1586 140 80 52 chr1 28074662 28074735 -214589618 + THE1C LTR MaLR 305 375 0 2462 216 31 23 chr1 28074735 28074821 -214589532 + L1MB2 LINE L1 5522 5606 -565 2418 100 7 0 chr1 28074821 28075130 -214589223 + AluSq SINE Alu 1 311 -2 2462 216 31 23 chr1 28075130 28075302 -214589051 + L1MB2 LINE L1 5606 5775 -396 1807 86 127 15 chr1 28075302 28075569 -214588784 + AluSg SINE Alu 1 297 -13 2462 216 31 23 chr1 28075569 28075914 -214588439 + L1MB2 LINE L1 5775 6131 -40 1480 176 42 46 chr1 28075918 28076056 -214588297 + AluJb SINE Alu 7 144 -168 2200 130 0 13 chr1 28076056 28076364 -214587989 + AluSg SINE Alu 1 304 -6 1480 176 42 46 chr1 28076364 28076532 -214587821 + AluJb SINE Alu 144 312 0 2119 118 0 56 chr1 28076549 28076748 -214587605 + AluSg SINE Alu 1 177 -133 2338 87 7 0 chr1 28076748 28077036 -214587317 - AluSc SINE Alu -19 290 1 2119 118 0 56 chr1 28077036 28077158 -214587195 + AluSg SINE Alu 177 304 -6 2331 85 0 0 chr1 28077158 28077466 -214586887 + AluSx SINE Alu 1 308 0 233 95 48 0 chr1 28077468 28077510 -214586843 + L1MB2 LINE L1 6118 6161 -10 2312 100 3 0 chr1 28077511 28077801 -214586552 - AluSx SINE Alu -21 291 1 1342 169 20 16 chr1 28077806 28078061 -214586292 - AluJo SINE Alu -12 300 45 1396 165 4 49 chr1 28078097 28078364 -214585989 + AluJb SINE Alu 42 296 -16 2441 96 0 0 chr1 28078490 28078793 -214585560 - AluSq SINE Alu -10 303 1 1023 230 69 45 chr1 28078896 28079110 -214585243 + MER2 DNA MER2_type 3 229 -116 831 150 0 0 chr1 28079110 28079243 -214585110 - FLAM_A SINE Alu 0 133 1 1023 230 69 45 chr1 28079243 28079363 -214584990 + MER2 DNA MER2_type 229 345 0 2320 177 32 9 chr1 28079363 28079827 -214584526 - L1MB3 LINE L1 -277 5906 5432 1036 193 0 0 chr1 28079828 28079994 -214584359 - AluJb SINE Alu -20 292 127 331 332 48 9 chr1 28080237 28080466 -214583887 - L1MB3 LINE L1 -1164 4982 4745 859 241 100 17 chr1 28080471 28080762 -214583591 + MER46C DNA MER2_type 19 333 -5 204 281 109 0 chr1 28080775 28080839 -214583514 - MIR SINE MIR -74 188 118 2340 110 0 0 chr1 28080839 28081147 -214583206 + AluSg SINE Alu 1 308 -2 286 228 114 0 chr1 28081151 28081230 -214583123 + FLAM_C SINE Alu 25 112 -21 432 0 0 0 chr1 28081230 28081278 -214583075 + (CA)n Simple_repeat Simple_repeat 2 49 0 236 179 0 0 chr1 28081302 28081341 -214583012 + Alu SINE Alu 240 278 -24 306 364 88 50 chr1 28081380 28081641 -214582712 + L2 LINE L2 2997 3267 -5 2232 121 7 0 chr1 28081644 28081951 -214582402 + AluSq SINE Alu 1 309 -4 206 292 254 15 chr1 28082074 28082204 -214582149 - MIR3 SINE MIR -15 193 33 1120 132 6 0 chr1 28082362 28082521 -214581832 + AluSp SINE Alu 137 296 -17 2408 99 3 0 chr1 28082521 28082824 -214581529 + AluSp SINE Alu 1 304 -9 2535 52 7 3 chr1 28082974 28083283 -214581070 - AluY SINE Alu -1 310 1 2239 113 0 0 chr1 28083361 28083685 -214580668 + AluSx SINE Alu 1 324 0 2274 119 3 0 chr1 28083691 28083993 -214580360 + AluSg SINE Alu 1 303 -7 221 287 167 0 chr1 28084052 28084160 -214580193 + MIR SINE MIR 40 165 -97 1958 101 36 22 chr1 28084782 28085060 -214579293 + AluSx SINE Alu 13 294 -18 289 274 44 18 chr1 28085213 28085326 -214579027 + MIR SINE MIR 122 237 -25 216 234 191 53 chr1 28086088 28086182 -214578171 - MIR SINE MIR -67 141 35 901 179 19 0 chr1 28087224 28087386 -214576967 + MER45A DNA AcHobo 2 166 -12 559 315 137 15 chr1 28087403 28087586 -214576767 + L2 LINE L2 1492 1651 -1663 1556 149 19 76 chr1 28087586 28087902 -214576451 - AluJo SINE Alu -14 298 1 559 315 137 15 chr1 28087902 28088045 -214576308 + L2 LINE L2 1651 1775 -1539 1995 114 45 14 chr1 28088045 28088334 -214576019 - AluSx SINE Alu -14 298 1 559 315 137 15 chr1 28088334 28088479 -214575874 + L2 LINE L2 1775 2022 -1292 1695 236 81 33 chr1 28088592 28089074 -214575279 + MER69 DNA AcHobo 41 545 -1981 1275 153 0 47 chr1 28089081 28089181 -214575172 + AluJb SINE Alu 1 104 -208 852 45 0 0 chr1 28089181 28089291 -214575062 + L1PA5 LINE L1 6040 6149 -5 1275 153 0 47 chr1 28089291 28089462 -214574891 + AluJb SINE Alu 104 304 -8 1923 150 3 35 chr1 28089464 28089666 -214574687 + AluSx SINE Alu 1 208 -104 2303 116 0 3 chr1 28089666 28089969 -214574384 + AluSq SINE Alu 1 302 -11 2209 91 27 7 chr1 28089969 28090265 -214574088 + AluSg SINE Alu 1 303 -7 1923 150 3 35 chr1 28090265 28090375 -214573978 + AluSx SINE Alu 206 304 -8 859 223 69 156 chr1 28090379 28090541 -214573812 + L1MC4a LINE L1 6470 6644 -1164 243 0 0 0 chr1 28090541 28090568 -214573785 + (TG)n Simple_repeat Simple_repeat 2 28 0 859 223 69 156 chr1 28090568 28090631 -214573722 + L1MC4a LINE L1 6644 6711 -1097 2269 119 7 3 chr1 28090631 28090934 -214573419 - AluSx SINE Alu -6 306 3 859 223 69 156 chr1 28090934 28090947 -214573406 + L1MC4a LINE L1 6711 6724 -1084 2066 146 0 13 chr1 28090947 28091262 -214573091 - AluSx SINE Alu -1 311 1 2015 151 0 3 chr1 28091265 28091564 -214572789 - AluSx SINE Alu -11 301 4 1765 180 17 3 chr1 28091565 28091865 -214572488 - AluJb SINE Alu -8 304 1 859 223 69 156 chr1 28091865 28092080 -214572273 + L1MC4a LINE L1 6725 6891 -917 1749 164 7 17 chr1 28092136 28092428 -214571925 - AluJo SINE Alu -14 298 10 344 159 43 0 chr1 28092438 28092507 -214571846 + MER69 DNA AcHobo 2453 2524 -2 618 175 58 0 chr1 28092512 28092632 -214571721 - MIR SINE MIR -109 153 27 210 351 147 11 chr1 28092784 28092975 -214571378 - MIR SINE MIR -25 237 21 240 284 136 0 chr1 28093279 28093367 -214570986 + MIR SINE MIR 23 122 -140 182 212 0 0 chr1 28093416 28093449 -214570904 + MIR SINE MIR 218 250 -12 364 224 0 0 chr1 28093454 28093521 -214570832 + L1MC4 LINE L1 6637 6703 -1339 352 294 47 0 chr1 28093477 28093562 -214570791 - L1MC4 LINE L1 -1339 6703 6615 * 2183 128 0 0 chr1 28093562 28093851 -214570502 - AluSx SINE Alu -23 289 1 407 286 124 0 chr1 28095192 28095231 -214569122 - MIR SINE MIR -46 216 183 2266 102 0 13 chr1 28095231 28095535 -214568818 - AluSx SINE Alu -12 300 1 407 286 124 0 chr1 28095535 28095680 -214568673 - MIR SINE MIR -79 183 9 1041 220 68 24 chr1 28095996 28096246 -214568107 - MIR SINE MIR 0 262 2 1760 151 6 72 chr1 28099115 28099261 -214565092 + AluJo SINE Alu 2 156 -156 2345 103 0 0 chr1 28099261 28099561 -214564792 + AluSx SINE Alu 1 300 -12 1640 103 66 4 chr1 28099564 28099806 -214564547 + AluSg1 SINE Alu 53 309 0 1760 151 6 72 chr1 28099806 28099986 -214564367 + AluJo SINE Alu 158 310 -2 2463 85 0 0 chr1 28100345 28100639 -214563714 - AluSq SINE Alu -19 294 1 467 350 111 37 chr1 28101036 28101468 -214562885 - L2 LINE L2 0 3272 2809 2507 76 0 0 chr1 28101647 28101968 -214562385 - AluY SINE Alu 0 321 1 250 206 151 111 chr1 28101973 28102071 -214562282 - MIR SINE MIR -10 252 146 1984 131 20 20 chr1 28102071 28102232 -214562121 - AluSx SINE Alu -15 297 134 2249 99 13 0 chr1 28102232 28102536 -214561817 - AluSp SINE Alu -5 308 1 1984 131 20 20 chr1 28102536 28102671 -214561682 - AluSx SINE Alu -177 135 1 250 206 151 111 chr1 28102671 28102698 -214561655 - MIR SINE MIR -116 146 122 555 257 127 84 chr1 28102699 28103088 -214561265 + MER34 LTR ERV1 3 374 -168 2413 87 0 0 chr1 28103088 28103387 -214560966 + AluSx SINE Alu 14 312 0 555 257 127 84 chr1 28103387 28103398 -214560955 + MER34 LTR ERV1 374 383 -159 2270 74 53 3 chr1 28103398 28103683 -214560670 + AluSx SINE Alu 1 299 -13 555 257 127 84 chr1 28103683 28103771 -214560582 + MER34 LTR ERV1 383 513 -29 602 246 0 0 chr1 28103808 28103922 -214560431 - MIR SINE MIR -141 121 8 880 188 0 0 chr1 28103945 28104099 -214560254 + FRAM SINE Alu 1 153 -23 1500 115 69 58 chr1 28104114 28104375 -214559978 + AluSx SINE Alu 49 312 0 2571 44 0 3 chr1 28104446 28104807 -214559546 - AluY SINE Alu 0 311 1 971 126 0 7 chr1 28104815 28104950 -214559403 - AluJo SINE Alu -178 134 1 21 89 0 0 chr1 28105037 28105093 -214559260 + AT_rich Low_complexity Low_complexity 1 56 0 228 109 22 22 chr1 28105421 28105467 -214558886 - MER92B LTR ERV1 0 636 591 2332 91 0 10 chr1 28105471 28105769 -214558584 - AluSx SINE Alu -17 295 1 764 203 32 6 chr1 28105776 28105934 -214558419 - AluJ SINE Alu -16 296 135 2420 194 70 20 chr1 28105971 28106532 -214557821 - MER92B LTR ERV1 -47 589 1 683 199 8 0 chr1 28106561 28106692 -214557661 - AluJ SINE Alu -170 132 1 2684 70 0 0 chr1 28106831 28107143 -214557210 + AluSx SINE Alu 1 312 0 273 166 5 8 chr1 28107148 28107365 -214556988 + AluJo SINE Alu 4 296 -6 598 263 89 58 chr1 28107375 28107736 -214556617 - L1ME LINE L1 -531 5631 5260 200 250 83 0 chr1 28107841 28107901 -214556452 - MIR SINE MIR -70 192 128 820 272 58 8 chr1 28109133 28109376 -214554977 - MIR SINE MIR -2 260 6 2149 136 7 3 chr1 28109570 28109880 -214554473 + AluJb SINE Alu 1 311 -1 1595 138 32 16 chr1 28109973 28110220 -214554133 + AluSx SINE Alu 50 300 -12 1856 136 21 4 chr1 28110373 28110680 -214553673 - AluJb SINE Alu 0 312 1 2560 68 0 0 chr1 28111499 28111795 -214552558 - AluY SINE Alu -15 296 1 2168 113 0 31 chr1 28111808 28112126 -214552227 - AluY SINE Alu -3 308 1 305 91 0 0 chr1 28112164 28112208 -214552145 + AluSg/x SINE Alu 192 235 -67 299 228 30 40 chr1 28112250 28112351 -214552002 - MIR SINE MIR -64 144 45 2300 87 28 0 chr1 28112606 28112892 -214551461 + AluSx SINE Alu 1 294 -18 1894 167 10 3 chr1 28112987 28113293 -214551060 - AluJo SINE Alu -4 308 1 541 316 17 17 chr1 28113491 28113668 -214550685 + MIR SINE MIR 42 218 -44 1045 176 12 0 chr1 28114542 28114712 -214549641 + AluJo SINE Alu 122 293 -19 2284 94 37 10 chr1 28114718 28115016 -214549337 + AluSc SINE Alu 2 307 -2 238 267 218 2 chr1 28115492 28115603 -214548750 + MIR SINE MIR 35 164 -59 214 314 0 0 chr1 28115583 28115634 -214548719 - L2 LINE L2 -83 3189 3139 * 642 160 56 0 chr1 28116268 28116393 -214547960 + AluJo/FLAM SINE Alu 2 133 -179 2279 107 0 13 chr1 28116395 28116529 -214547824 + AluSx SINE Alu 3 137 -175 2275 102 0 3 chr1 28116529 28116822 -214547531 + AluSg SINE Alu 1 292 -18 2279 107 0 13 chr1 28116822 28116997 -214547356 + AluSx SINE Alu 137 308 -4 215 273 66 41 chr1 28118871 28118992 -214545361 - MIR SINE MIR -118 144 21 * 452 285 63 6 chr1 28118953 28119111 -214545242 + MIR SINE MIR 31 197 -65 380 278 20 10 chr1 28119821 28119938 -214544415 + MIR SINE MIR 17 135 -73 326 265 122 0 chr1 28119941 28120039 -214544314 - L2 LINE L2 -272 3041 2932 914 189 65 5 chr1 28120040 28120225 -214544128 - MLT1A1 LTR MaLR 0 365 170 2502 71 0 3 chr1 28120376 28120672 -214543681 + AluSp SINE Alu 1 295 -18 2490 74 0 0 chr1 28120675 28120971 -214543382 + AluY SINE Alu 1 296 -15 280 223 98 54 chr1 28121271 28121383 -214542970 - MIR3 SINE MIR -23 185 69 2291 89 20 10 chr1 28121520 28121692 -214542661 - AluSq SINE Alu -8 305 127 2498 66 20 0 chr1 28121692 28121993 -214542360 - AluY SINE Alu -4 307 1 2291 89 20 10 chr1 28121993 28122122 -214542231 - AluSq SINE Alu -186 127 1 267 218 218 0 chr1 28122133 28122211 -214542142 - MIR SINE MIR -13 249 155 2362 80 0 0 chr1 28122657 28122959 -214541394 + AluY SINE Alu 1 302 -9 285 346 45 0 chr1 28123388 28123521 -214540832 - MIR SINE MIR -1 261 123 1957 123 3 3 chr1 28123528 28123837 -214540516 - AluSx SINE Alu 0 309 1 237 360 140 0 chr1 28123859 28123995 -214540358 - L2 LINE L2 -17 3255 3101 2006 72 0 0 chr1 28124473 28124724 -214539629 - AluY SINE Alu -7 304 54 2077 118 10 7 chr1 28124726 28125031 -214539322 - AluSq SINE Alu -7 306 1 1095 153 83 147 chr1 28126155 28126300 -214538053 - AluJo SINE Alu -7 295 179 2152 113 0 3 chr1 28126300 28126602 -214537751 - AluSq SINE Alu -12 301 1 1095 153 83 147 chr1 28126602 28126770 -214537583 - AluJo SINE Alu -123 179 2 1205 162 43 5 chr1 28126782 28126992 -214537361 - AluJb SINE Alu -10 302 85 2114 119 18 6 chr1 28127033 28127376 -214536977 + MER47A DNA MER2_type 20 366 0 223 309 95 16 chr1 28127598 28127724 -214536629 - L2 LINE L2 -212 3060 2925 699 197 0 8 chr1 28127770 28127887 -214536466 + FLAM_C SINE Alu 2 117 -26 26 30 0 0 chr1 28127892 28127925 -214536428 + AT_rich Low_complexity Low_complexity 1 33 0 2216 104 0 0 chr1 28127925 28128222 -214536131 + AluSc SINE Alu 1 297 -12 181 204 45 0 chr1 28128251 28128295 -214536058 - MIR SINE MIR -48 214 169 779 177 0 0 chr1 28129344 28129468 -214534885 - FLAM_A SINE Alu -6 127 4 586 246 62 26 chr1 28129471 28129640 -214534713 - MER113 DNA MER1_type? -205 316 155 2079 103 0 10 chr1 28129640 28129930 -214534423 + AluSc SINE Alu 1 287 -22 586 246 62 26 chr1 28129930 28129955 -214534398 - MER113 DNA MER1_type? -366 155 132 2116 101 10 0 chr1 28129955 28130243 -214534110 + AluSx SINE Alu 1 291 -21 586 246 62 26 chr1 28130243 28130319 -214534034 - MER113 DNA MER1_type? -389 132 35 2163 90 7 0 chr1 28130492 28130782 -214533571 - AluSg SINE Alu -18 292 1 2087 112 0 7 chr1 28132018 28132323 -214532030 + AluSq SINE Alu 1 303 -10 829 168 14 7 chr1 28132589 28132732 -214531621 + FRAM SINE Alu 21 164 -12 544 278 87 50 chr1 28132734 28133033 -214531320 - L1ME LINE L1 -302 5819 5510 1493 143 103 0 chr1 28134021 28134273 -214530080 - AluJb SINE Alu -20 292 15 2818 12 0 3 chr1 28134467 28134786 -214529567 + AluYb8 SINE Alu 1 318 0 863 129 30 0 chr1 28134841 28134973 -214529380 - AluJo SINE Alu -176 136 1 1994 123 0 13 chr1 28135205 28135506 -214528847 - AluSg SINE Alu -13 297 1 2321 82 0 19 chr1 28135518 28135835 -214528518 - AluY SINE Alu 0 311 1 2100 127 3 3 chr1 28136252 28136560 -214527793 - AluSx SINE Alu -4 308 1 1280 109 0 0 chr1 28136636 28136811 -214527542 - AluSq SINE Alu -5 308 134 1955 132 3 13 chr1 28136811 28137121 -214527232 - AluSq SINE Alu -6 307 1 2045 103 21 0 chr1 28137303 28137594 -214526759 + AluSx SINE Alu 1 297 -15 2081 118 3 3 chr1 28137606 28137902 -214526451 + AluSx SINE Alu 1 296 -16 383 271 119 40 chr1 28137903 28138054 -214526299 + MIR SINE MIR 25 187 -75 225 0 0 0 chr1 28138204 28138229 -214526124 + (GA)n Simple_repeat Simple_repeat 2 26 0 825 151 0 0 chr1 28138669 28138788 -214525565 + FLAM_C SINE Alu 2 120 -23 2076 92 0 10 chr1 28138792 28139084 -214525269 - AluY SINE Alu -18 293 5 2199 56 0 11 chr1 28139087 28139412 -214524941 - AluY SINE Alu 0 322 1 2045 128 3 3 chr1 28139412 28139718 -214524635 - AluSx SINE Alu -6 306 1 1817 132 28 60 chr1 28139896 28140215 -214524138 + AluJb SINE Alu 3 311 -1 555 16 0 0 chr1 28140223 28140287 -214524066 + (GA)n Simple_repeat Simple_repeat 1 64 0 1445 137 116 21 chr1 28140984 28141269 -214523084 + AluJb SINE Alu 1 312 0 2203 85 0 7 chr1 28141271 28141566 -214522787 + AluSg SINE Alu 1 293 -17 2588 32 3 0 chr1 28141568 28141878 -214522475 + AluY SINE Alu 1 311 0 1097 130 27 0 chr1 28141881 28142066 -214522287 + AluJo SINE Alu 117 306 -6 2202 84 3 7 chr1 28142068 28142364 -214521989 + AluSx SINE Alu 3 297 -15 385 250 154 22 chr1 28142396 28142532 -214521821 - MIR SINE MIR -80 182 29 2249 66 0 23 chr1 28142537 28142840 -214521513 - AluY SINE Alu -15 296 1 400 244 11 0 chr1 28142870 28142960 -214521393 - MIR3 SINE MIR -49 159 69 21 0 0 0 chr1 28143045 28143066 -214521287 + GC_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr1 28144170 28144205 -214520148 + (CA)n Simple_repeat Simple_repeat 1 35 0 266 324 99 14 chr1 28145852 28145994 -214518359 - MIR SINE MIR -35 227 74 921 126 0 22 chr1 28146656 28146791 -214517562 - FLAM_C SINE Alu -1 132 1 1717 169 30 7 chr1 28147368 28147670 -214516683 - AluJb SINE Alu -3 309 1 2268 92 0 0 chr1 28147714 28148017 -214516336 + AluY SINE Alu 1 303 -8 359 211 316 13 chr1 28148062 28148214 -214516139 + MIR SINE MIR 31 228 -34 2117 116 0 31 chr1 28148218 28148536 -214515817 - AluSq SINE Alu -5 308 1 1759 80 27 0 chr1 28148789 28149013 -214515340 + MER30 DNA MER1_type 1 230 0 376 303 114 0 chr1 28149626 28149758 -214514595 + L3b LINE CR1 1240 1386 -197 25 0 0 0 chr1 28149896 28149921 -214514432 + AT_rich Low_complexity Low_complexity 1 25 0 344 104 0 0 chr1 28149924 28149972 -214514381 - MER66A LTR ERV1 -144 334 287 608 264 81 0 chr1 28150085 28150259 -214514094 + MIR3 SINE MIR 20 207 -1 357 265 92 24 chr1 28150317 28150471 -214513882 + MIR SINE MIR 23 192 -67 180 152 0 0 chr1 28153664 28153697 -214510656 + (CA)n Simple_repeat Simple_repeat 1 33 0 418 292 50 12 chr1 28156065 28156234 -214508119 + MIR SINE MIR 23 194 -62 250 237 92 13 chr1 28156266 28156342 -214508011 - MER103 DNA DNA -77 89 8 186 255 0 0 chr1 28156832 28156879 -214507474 + MIR SINE MIR 45 91 -171 591 296 40 74 chr1 28158374 28158725 -214505628 + L2 LINE L2 2921 3259 -13 2112 107 3 3 chr1 28160207 28160505 -214503848 - AluSx SINE Alu -14 298 1 693 281 55 85 chr1 28160515 28160690 -214503663 + L1MC5 LINE L1 7312 7491 -470 942 205 0 0 chr1 28160690 28160856 -214503497 + FRAM SINE Alu 1 166 0 693 281 55 85 chr1 28160856 28161024 -214503329 + L1MC5 LINE L1 7491 7663 -298 1772 155 3 23 chr1 28161024 28161328 -214503025 + AluJo SINE Alu 1 298 -14 693 281 55 85 chr1 28161328 28161341 -214503012 + L1MC5 LINE L1 7663 7675 -286 2284 81 0 0 chr1 28161341 28161636 -214502717 + AluY SINE Alu 1 295 -16 693 281 55 85 chr1 28161636 28161911 -214502442 + L1MC5 LINE L1 7675 7926 -35 2401 56 20 3 chr1 28161915 28162221 -214502132 + AluY SINE Alu 1 311 0 238 174 0 61 chr1 28162222 28162320 -214502033 - L1MC4 LINE L1 -1337 6705 6614 344 256 21 10 chr1 28162322 28162418 -214501935 + L1MC3 LINE L1 6571 6646 -1139 * 345 182 45 0 chr1 28162359 28162425 -214501928 - L1MCa LINE L1 -4362 2064 1996 708 191 58 12 chr1 28162433 28162606 -214501747 + L1ME3A LINE L1 4477 4657 -1489 992 179 0 0 chr1 28162608 28162776 -214501577 + FRAM SINE Alu 1 166 -10 328 313 0 0 chr1 28162786 28162869 -214501484 + L1ME3A LINE L1 5119 5201 -945 2266 100 7 0 chr1 28162903 28163213 -214501140 + AluSx SINE Alu 1 312 0 2670 242 74 43 chr1 28163214 28163311 -214501042 + L1ME3A LINE L1 5191 5284 -886 2196 103 0 13 chr1 28163311 28163622 -214500731 + AluSx SINE Alu 1 307 -5 2670 242 74 43 chr1 28163622 28164197 -214500156 + L1ME3A LINE L1 5284 5840 -330 2219 106 3 0 chr1 28164197 28164499 -214499854 + AluSx SINE Alu 1 303 -9 2670 242 74 43 chr1 28164499 28164736 -214499617 + L1ME3A LINE L1 5840 6121 -49 2092 113 0 3 chr1 28164736 28165029 -214499324 - AluSx SINE Alu -20 292 1 2670 242 74 43 chr1 28165029 28165081 -214499272 + L1ME3A LINE L1 6121 6170 0 2226 109 6 0 chr1 28165095 28165406 -214498947 + AluSq SINE Alu 1 313 0 376 215 0 13 chr1 28165679 28165758 -214498595 - L2 LINE L2 -9 3304 3227 395 297 22 87 chr1 28165875 28166060 -214498293 + MIR SINE MIR 14 186 -22 512 247 120 13 chr1 28166097 28166247 -214498106 + MIR SINE MIR 97 262 0 711 186 0 0 chr1 28166260 28166373 -214497980 + AluJo/FLAM SINE Alu 2 114 -198 2213 104 3 3 chr1 28166373 28166682 -214497671 - AluSg SINE Alu -1 309 1 382 235 39 10 chr1 28166683 28166785 -214497568 + MIR SINE MIR 118 222 -40 336 333 0 32 chr1 28166974 28167100 -214497253 + MIR SINE MIR 22 143 -119 861 142 0 58 chr1 28167102 28167257 -214497096 + AluJo SINE Alu 1 146 -166 2051 99 7 14 chr1 28167257 28167540 -214496813 + AluSq SINE Alu 1 281 -32 304 213 49 0 chr1 28167554 28167615 -214496738 + AluSg/x SINE Alu 129 192 -110 562 187 0 28 chr1 28167685 28167792 -214496561 + FRAM SINE Alu 67 170 -6 2212 87 7 3 chr1 28167794 28168092 -214496261 + AluSx SINE Alu 1 299 -13 275 342 34 17 chr1 28168093 28168210 -214496143 + MIR SINE MIR 144 262 0 287 250 30 20 chr1 28168693 28168793 -214495560 - MER117 DNA MER1_type -96 101 1 247 214 143 12 chr1 28169000 28169084 -214495269 - L2 LINE L2 -1 3312 3218 189 238 262 0 chr1 28169090 28169174 -214495179 + L2 LINE L2 3207 3312 -1 181 308 19 0 chr1 28169676 28169728 -214494625 - L2 LINE L2 -20 3293 3241 381 309 48 18 chr1 28169806 28169971 -214494382 + MIR SINE MIR 29 198 -64 832 153 0 36 chr1 28170094 28170231 -214494122 + FLAM_C SINE Alu 2 133 -10 2181 106 10 3 chr1 28170241 28170552 -214493801 + AluSp SINE Alu 1 313 0 315 270 122 57 chr1 28170740 28170756 -214493597 + L1MC5 LINE L1 7479 7493 -468 2164 106 0 0 chr1 28170756 28171041 -214493312 + AluSx SINE Alu 1 285 -27 307 0 0 0 chr1 28171041 28171075 -214493278 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 315 270 122 57 chr1 28171075 28171275 -214493078 + L1MC5 LINE L1 7493 7679 -282 2223 68 0 17 chr1 28171275 28171569 -214492784 - AluY SINE Alu -22 289 1 211 104 42 21 chr1 28171576 28171624 -214492729 + (TA)n Simple_repeat Simple_repeat 1 49 0 315 270 122 57 chr1 28171624 28171646 -214492707 + L1MC5 LINE L1 7684 7793 -168 2453 80 0 0 chr1 28171668 28171979 -214492374 + AluY SINE Alu 1 311 0 405 248 119 0 chr1 28172492 28172593 -214491760 + MER81 DNA DNA 2 114 0 2277 88 0 0 chr1 28172814 28173110 -214491243 - AluSc SINE Alu -8 301 6 337 296 37 0 chr1 28174169 28174277 -214490076 + MIR SINE MIR 116 227 -35 228 221 16 11 chr1 28174982 28175131 -214489222 + L2 LINE L2 2892 3081 -232 1108 196 93 45 chr1 28175144 28175476 -214488877 + L2 LINE L2 2966 3313 0 695 242 130 9 chr1 28175477 28175692 -214488661 + MIR SINE MIR 3 243 -19 208 263 162 50 chr1 28175744 28175843 -214488510 + L2 LINE L2 3156 3265 -48 304 250 115 0 chr1 28176299 28176403 -214487950 - MER117 DNA MER1_type -32 165 50 189 107 0 0 chr1 28176438 28176466 -214487887 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 530 308 81 31 chr1 28176467 28176727 -214487626 - L2 LINE L2 -10 3262 2990 861 297 185 27 chr1 28176984 28177454 -214486899 + L2 LINE L2 2636 3214 -99 2100 104 3 7 chr1 28177454 28177780 -214486573 + AluSq SINE Alu 1 313 0 861 297 185 27 chr1 28177780 28177886 -214486467 + L2 LINE L2 3214 3302 -11 266 211 0 0 chr1 28177897 28177949 -214486404 - MIR SINE MIR 0 262 211 761 291 66 0 chr1 28178073 28178286 -214486067 - MIR SINE MIR -31 231 5 566 291 155 7 chr1 28178805 28179076 -214485277 - L2 LINE L2 0 3313 3003 217 253 137 0 chr1 28179186 28179281 -214485072 - L2 LINE L2 -599 2715 2608 801 231 71 5 chr1 28180049 28180261 -214484092 - MIR SINE MIR -32 230 5 180 111 0 0 chr1 28181560 28181587 -214482766 + (CTG)n Simple_repeat Simple_repeat 2 28 0 237 125 29 77 chr1 28181590 28181694 -214482659 + (CGGGG)n Simple_repeat Simple_repeat 3 101 0 27 49 0 0 chr1 28181738 28181779 -214482574 + GC_rich Low_complexity Low_complexity 1 41 0 206 157 43 29 chr1 28181857 28181927 -214482426 + (CCG)n Simple_repeat Simple_repeat 2 72 0 235 270 16 16 chr1 28182079 28182142 -214482211 - L2 LINE L2 -18 3254 3192 2058 187 59 119 chr1 28182439 28182503 -214481850 - MLT1E LTR MaLR -1 592 526 2172 78 20 3 chr1 28182503 28182796 -214481557 + AluSc SINE Alu 1 298 -11 2058 187 59 119 chr1 28182796 28183361 -214480992 - MLT1E LTR MaLR -67 526 1 2318 103 0 0 chr1 28183865 28184175 -214480178 - AluSq SINE Alu -3 310 1 1847 152 10 7 chr1 28184324 28184626 -214479727 + AluJo SINE Alu 1 303 -9 2133 85 23 23 chr1 28184626 28184931 -214479422 + AluSg SINE Alu 1 306 -4 625 200 0 0 chr1 28185026 28185136 -214479217 + AluJ SINE Alu 2 111 -201 1034 276 109 6 chr1 28185261 28185609 -214478744 + MLT1J2 LTR MaLR 67 450 0 418 132 40 0 chr1 28185898 28185974 -214478379 - LTR50 LTR ERVL 0 795 717 2164 114 0 3 chr1 28185974 28186273 -214478080 + AluSg SINE Alu 1 298 -12 1340 138 0 50 chr1 28186280 28186519 -214477834 + AluJb SINE Alu 86 312 0 28 48 0 0 chr1 28186551 28186593 -214477760 + AT_rich Low_complexity Low_complexity 1 42 0 1165 159 0 66 chr1 28186598 28186745 -214477608 + AluJo SINE Alu 1 129 -183 2401 71 0 0 chr1 28186745 28187041 -214477312 + AluY SINE Alu 1 296 -15 1165 159 0 66 chr1 28187041 28187119 -214477234 + AluJo SINE Alu 129 211 -101 521 152 48 0 chr1 28187131 28187236 -214477117 - LTR50 LTR ERVL -144 651 542 876 200 0 6 chr1 28187273 28187443 -214476910 - FAM SINE Alu -9 40 1 847 219 157 7 chr1 28187452 28187774 -214476579 - LTR50 LTR ERVL -389 406 18 1842 137 31 0 chr1 28187829 28188121 -214476232 - AluSg SINE Alu -9 301 1 1798 135 0 49 chr1 28188254 28188412 -214475941 - AluSx SINE Alu -23 289 125 2078 92 14 0 chr1 28188412 28188693 -214475660 - AluSg SINE Alu -15 295 11 2228 94 3 0 chr1 28188701 28188999 -214475354 - AluSx SINE Alu -13 299 1 1798 135 0 49 chr1 28188999 28189135 -214475218 - AluSx SINE Alu -194 118 1 2709 94 10 108 chr1 28189194 28189876 -214474477 - SVA Other Other -339 1047 433 2624 84 23 77 chr1 28189893 28191062 -214473291 - SVA Other Other -518 868 393 305 289 19 48 chr1 28191407 28191511 -214472842 - L1MC4 LINE L1 -1334 6708 6608 890 130 30 0 chr1 28191511 28191642 -214472711 - AluJb SINE Alu -177 135 1 2069 103 21 0 chr1 28191654 28191944 -214472409 - AluSx SINE Alu -16 296 1 313 369 0 0 chr1 28192085 28192207 -214472146 - HERVL LTR ERVL -2961 2693 2572 270 179 0 0 chr1 28192207 28192263 -214472090 + C-rich Low_complexity Low_complexity 1 56 0 358 204 20 10 chr1 28192264 28192362 -214471991 + CT-rich Low_complexity Low_complexity 4 102 0 2219 102 0 16 chr1 28192365 28192679 -214471674 - AluSg SINE Alu -1 309 1 2064 89 45 0 chr1 28192679 28192971 -214471382 - AluSp SINE Alu -6 307 3 756 253 11 5 chr1 28193057 28193113 -214471240 - HERVL LTR ERVL -3250 2514 2460 1876 154 3 0 chr1 28193113 28193405 -214470948 - AluJo SINE Alu -19 293 1 1798 154 0 17 chr1 28193407 28193699 -214470654 - 7SLRNA srpRNA srpRNA -10 310 24 756 253 11 5 chr1 28193699 28193829 -214470524 - HERVL LTR ERVL -3304 2460 2324 1244 169 143 90 chr1 28193831 28194062 -214470291 - MLT1B LTR MaLR -1 389 172 2188 110 0 16 chr1 28194062 28194239 -214470114 - AluSq SINE Alu 0 313 135 188 35 35 0 chr1 28194239 28194268 -214470085 + (TA)n Simple_repeat Simple_repeat 1 30 0 2260 78 0 0 chr1 28194269 28194562 -214469791 - AluY SINE Alu -18 293 1 2188 110 0 16 chr1 28194562 28194700 -214469653 - AluSq SINE Alu -177 136 1 1244 169 143 90 chr1 28194700 28194840 -214469513 - MLT1B LTR MaLR -218 172 1 1452 275 11 7 chr1 28194841 28195369 -214468984 - HERVL LTR ERVL -3438 2326 1705 1449 356 27 36 chr1 28195398 28195776 -214468577 - HERVL LTR ERVL -4174 1590 1210 1663 156 32 41 chr1 28195776 28195921 -214468432 + AluJb SINE Alu 1 146 -166 2154 107 7 0 chr1 28195921 28196221 -214468132 + AluSq SINE Alu 1 302 -11 1663 156 32 41 chr1 28196221 28196390 -214467963 + AluJb SINE Alu 146 312 0 1449 356 27 36 chr1 28196390 28196835 -214467518 - HERVL LTR ERVL -4554 1210 775 2413 228 161 10 chr1 28197465 28197976 -214466377 - LTR50 LTR ERVL 0 795 152 2232 88 0 3 chr1 28197976 28198270 -214466083 + AluSq SINE Alu 1 293 -20 2413 228 161 10 chr1 28198270 28198448 -214465905 - LTR50 LTR ERVL -643 152 2 2417 71 0 0 chr1 28198458 28198768 -214465585 - AluSg SINE Alu 0 310 1 1886 141 3 25 chr1 28198946 28199265 -214465088 + AluJb SINE Alu 1 312 0 1943 152 0 7 chr1 28199297 28199599 -214464754 - AluSx SINE Alu -12 300 1 1109 151 0 0 chr1 28199662 28199828 -214464525 + AluJb SINE Alu 144 309 -3 4372 158 41 24 chr1 28199828 28200509 -214463844 + L1MB3 LINE L1 5027 5695 -488 2402 62 0 31 chr1 28200509 28200829 -214463524 + AluY SINE Alu 1 310 -1 4372 158 41 24 chr1 28200829 28201060 -214463293 + L1MB3 LINE L1 5695 5921 -262 2078 122 0 3 chr1 28201060 28201356 -214462997 + AluSx SINE Alu 1 295 -17 4372 158 41 24 chr1 28201356 28201464 -214462889 + L1MB3 LINE L1 5921 6168 -15 804 194 0 70 chr1 28201656 28201842 -214462511 + FRAM SINE Alu 1 172 -4 2043 98 21 7 chr1 28201901 28202214 -214462139 + AluSg SINE Alu 1 310 0 1815 145 3 60 chr1 28202242 28202573 -214461780 + AluJo SINE Alu 1 312 0 535 189 72 85 chr1 28202960 28203007 -214461346 + MLT1J1 LTR MaLR 31 77 -369 891 188 39 0 chr1 28203007 28203188 -214461165 + MER53 DNA DNA 1 188 -1 535 189 72 85 chr1 28203188 28203293 -214461060 + MLT1J1 LTR MaLR 77 181 -265 2323 60 3 7 chr1 28203300 28203598 -214460755 + AluY SINE Alu 1 297 -14 578 0 0 47 chr1 28203601 28203687 -214460666 + (TCTCCC)n Simple_repeat Simple_repeat 2 83 0 6024 74 25 40 chr1 28203687 28205644 -214458709 + SVA Other Other 53 1386 0 556 278 82 5 chr1 28205663 28205857 -214458496 + MLT1J2 LTR MaLR 240 448 -2 1926 147 7 16 chr1 28205923 28206230 -214458123 - AluJb SINE Alu -8 304 1 431 241 213 0 chr1 28206295 28206436 -214457917 - MIR SINE MIR -1 261 91 2505 59 0 0 chr1 28206438 28206745 -214457608 - AluY SINE Alu -4 307 1 251 306 204 21 chr1 28206768 28206954 -214457399 + L2 LINE L2 2148 2367 -947 601 179 22 120 chr1 28206958 28207142 -214457211 - MIR SINE MIR -40 222 57 2479 52 0 3 chr1 28207443 28207748 -214456605 + AluSg SINE Alu 1 304 -6 283 229 60 169 chr1 28209533 28209734 -214454619 - MIR3 SINE MIR -11 197 19 27 29 0 0 chr1 28209745 28209779 -214454574 + AT_rich Low_complexity Low_complexity 1 34 0 1958 143 16 0 chr1 28209799 28210106 -214454247 - AluSx SINE Alu 0 312 1 208 321 46 113 chr1 28211850 28212069 -214452284 + L2 LINE L2 2887 3119 -153 2426 76 0 0 chr1 28212069 28212371 -214451982 + AluY SINE Alu 2 303 -8 2076 111 0 7 chr1 28212376 28212704 -214451649 + AluSx SINE Alu 1 312 0 208 321 46 113 chr1 28212704 28212800 -214451553 + L2 LINE L2 3123 3176 -96 2260 105 0 0 chr1 28212800 28213105 -214451248 - AluSg1 SINE Alu -4 305 1 208 321 46 113 chr1 28213105 28213196 -214451157 + L2 LINE L2 3176 3272 0 207 247 55 0 chr1 28214427 28214500 -214449853 - L2 LINE L2 -843 2471 2395 808 141 16 0 chr1 28214506 28214627 -214449726 + FLAM_C SINE Alu 14 136 -7 1798 151 0 24 chr1 28214629 28214921 -214449432 + AluJo SINE Alu 3 287 -25 1970 247 172 2 chr1 28214939 28215574 -214448779 - L2 LINE L2 -1171 2143 1401 229 320 0 0 chr1 28215600 28215678 -214448675 + L2 LINE L2 1316 1393 -1921 * 582 268 58 11 chr1 28215677 28215867 -214448486 - L2 LINE L2 -2592 722 524 2607 38 0 0 chr1 28215909 28216223 -214448130 + AluYb8 SINE Alu 1 314 -4 921 136 45 7 chr1 28216223 28216377 -214447976 + AluSg/x SINE Alu 134 293 -19 259 328 104 16 chr1 28216377 28216502 -214447851 + L2 LINE L2 3136 3271 -1 232 137 176 0 chr1 28216981 28217032 -214447321 - L2 LINE L2 0 3272 3213 567 269 26 47 chr1 28217337 28217530 -214446823 + MIR3 SINE MIR 20 208 0 276 300 136 36 chr1 28218051 28218191 -214446162 + MIR SINE MIR 35 188 -74 194 229 240 21 chr1 28218903 28218999 -214445354 + L2 LINE L2 3196 3312 -1 185 281 45 45 chr1 28219684 28219773 -214444580 - MIR3 SINE MIR -9 199 111 366 284 0 0 chr1 28219782 28219870 -214444483 - MIR SINE MIR -90 172 85 785 269 119 31 chr1 28222612 28222770 -214441583 + L2 LINE L2 2922 3065 -248 980 128 0 0 chr1 28222770 28222903 -214441450 - FLAM_C SINE Alu 0 133 1 785 269 119 31 chr1 28222903 28223104 -214441249 + L2 LINE L2 3065 3313 0 543 261 99 0 chr1 28223107 28223249 -214441104 - MIR3 SINE MIR -49 159 4 259 272 206 11 chr1 28223398 28223490 -214440863 - L2 LINE L2 -1 3271 3162 190 219 98 0 chr1 28223513 28223554 -214440799 + MIR SINE MIR 216 260 -2 276 252 81 54 chr1 28224983 28225094 -214439259 + MIR SINE MIR 72 185 -77 1170 258 187 37 chr1 28225330 28226228 -214438125 - L2 LINE L2 -6 3307 2242 204 67 0 0 chr1 28227346 28227376 -214436977 + (T)n Simple_repeat Simple_repeat 1 30 0 1675 149 26 78 chr1 28230221 28230258 -214434095 + AluJo SINE Alu 1 38 -264 1975 110 3 95 chr1 28230258 28230448 -214433905 - AluSx SINE Alu -16 296 147 2320 109 0 3 chr1 28230448 28230750 -214433603 - AluSx SINE Alu -11 301 1 1975 110 3 95 chr1 28230750 28230885 -214433468 - AluSx SINE Alu -165 147 1 1675 149 26 78 chr1 28230885 28231004 -214433349 + AluJo SINE Alu 38 162 -140 1704 176 13 36 chr1 28231004 28231305 -214433048 + AluJb SINE Alu 1 294 -18 1675 149 26 78 chr1 28231305 28231455 -214432898 + AluJo SINE Alu 162 292 -10 181 255 235 20 chr1 28231480 28231578 -214432775 + MIR SINE MIR 134 252 -10 296 273 186 0 chr1 28231645 28231806 -214432547 + MIR SINE MIR 70 260 -2 2447 54 14 0 chr1 28231963 28232259 -214432094 + AluY SINE Alu 1 300 -11 690 126 134 17 chr1 28232400 28232519 -214431834 + FLAM_C SINE Alu 1 133 0 216 0 0 0 chr1 28234821 28234845 -214429508 + (CTG)n Simple_repeat Simple_repeat 3 26 0 2301 101 0 26 chr1 28237752 28238060 -214426293 - AluSx SINE Alu -12 300 1 2135 123 3 0 chr1 28238312 28238604 -214425749 - AluSx SINE Alu -19 293 1 214 276 82 31 chr1 28238907 28239005 -214425348 - L2 LINE L2 -182 3090 2988 446 271 59 35 chr1 28240078 28240248 -214424105 - MIR SINE MIR -87 175 2 384 253 70 57 chr1 28240980 28241138 -214423215 - MIR SINE MIR -91 171 12 962 206 0 6 chr1 28242469 28242644 -214421709 - FRAM SINE Alu -5 171 1 2353 106 3 0 chr1 28242652 28242953 -214421400 - AluSp SINE Alu -11 302 1 2496 61 0 7 chr1 28243034 28243331 -214421022 - AluY SINE Alu -16 295 1 2161 97 17 3 chr1 28243333 28243621 -214420732 - AluSq SINE Alu -21 292 1 1181 162 0 75 chr1 28244220 28244271 -214420082 + AluJb SINE Alu 87 140 -172 1754 156 19 0 chr1 28244271 28244540 -214419813 + AluSx SINE Alu 1 274 -38 182 61 0 30 chr1 28244546 28244579 -214419774 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1181 162 0 75 chr1 28244579 28244748 -214419605 + AluJb SINE Alu 145 297 -15 2111 100 14 0 chr1 28244764 28245045 -214419308 - AluSg SINE Alu -25 285 1 27 0 0 0 chr1 28245897 28245924 -214418429 + AT_rich Low_complexity Low_complexity 1 27 0 211 250 97 14 chr1 28245977 28246049 -214418304 - MIR SINE MIR -115 147 70 730 151 14 22 chr1 28246796 28246935 -214417418 + L1MA5A LINE L1 6156 6293 -4 21 0 0 0 chr1 28247817 28247838 -214416515 + AT_rich Low_complexity Low_complexity 1 21 0 2366 65 10 3 chr1 28247838 28248130 -214416223 - AluSp SINE Alu -19 294 1 494 228 59 7 chr1 28248157 28248293 -214416060 - MER58B DNA MER1_type -8 333 191 1893 164 0 16 chr1 28249028 28249345 -214415008 + AluJb SINE Alu 1 312 0 1442 161 12 116 chr1 28249897 28250233 -214414120 - AluJb SINE Alu -1 301 1 1826 112 109 4 chr1 28250598 28250865 -214413488 + AluSg SINE Alu 1 295 -15 2021 76 8 11 chr1 28251039 28251303 -214413050 - AluY SINE Alu -3 308 46 1081 101 0 0 chr1 28251304 28251443 -214412910 - AluSg/x SINE Alu -13 297 159 2505 74 0 0 chr1 28251534 28251833 -214412520 + AluY SINE Alu 1 299 -12 2292 102 0 29 chr1 28251949 28252262 -214412091 - AluSx SINE Alu -8 304 1 955 133 0 7 chr1 28252263 28252406 -214411947 - AluJo SINE Alu -170 142 1 202 83 0 42 chr1 28252443 28252491 -214411862 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 2507 75 0 0 chr1 28252493 28252800 -214411553 + AluY SINE Alu 1 307 -4 399 311 115 57 chr1 28253309 28253404 -214410949 - MIR SINE MIR -4 258 170 1750 153 51 10 chr1 28253404 28253699 -214410654 - AluJb SINE Alu -5 307 1 399 311 115 57 chr1 28253699 28253847 -214410506 - MIR SINE MIR -92 170 1 356 261 101 29 chr1 28253860 28253998 -214410355 + MIR3 SINE MIR 13 160 -48 2067 83 0 4 chr1 28254429 28254682 -214409671 + AluY SINE Alu 1 252 -59 460 219 171 0 chr1 28256912 28257035 -214407318 - MIR SINE MIR -70 192 49 2396 82 0 0 chr1 28257272 28257563 -214406790 - AluSx SINE Alu -21 291 1 2506 66 0 3 chr1 28259350 28259653 -214404700 - AluY SINE Alu -9 302 1 21 0 0 0 chr1 28259664 28259685 -214404668 + AT_rich Low_complexity Low_complexity 1 21 0 245 246 49 0 chr1 28259737 28259798 -214404555 + MER102b DNA MER1_type 249 312 -29 186 43 0 0 chr1 28259907 28259930 -214404423 + (A)n Simple_repeat Simple_repeat 1 23 0 1884 144 0 23 chr1 28260670 28260975 -214403378 - AluJo SINE Alu -14 298 1 2111 105 19 32 chr1 28261466 28261781 -214402572 - AluSx SINE Alu -1 311 1 1028 119 14 0 chr1 28261781 28261924 -214402429 - AluY SINE Alu -166 145 1 2351 102 3 7 chr1 28262463 28262768 -214401585 - AluSp SINE Alu -9 304 1 347 235 66 11 chr1 28262856 28262948 -214401405 + MIR3 SINE MIR 56 154 -54 24 0 0 0 chr1 28264726 28264750 -214399603 + AT_rich Low_complexity Low_complexity 1 24 0 1632 95 22 5 chr1 28264760 28264982 -214399371 - AluSq SINE Alu -87 226 1 2244 107 7 3 chr1 28265548 28265847 -214398506 - AluSg SINE Alu -10 300 1 499 236 0 0 chr1 28265952 28266041 -214398312 - MER5A DNA MER1_type -87 102 14 276 334 161 21 chr1 28267274 28267702 -214396651 + L2 LINE L2 2007 2494 -820 273 294 84 28 chr1 28268270 28268413 -214395940 - L3 LINE CR1 -4 1573 1423 298 390 6 6 chr1 28268542 28268706 -214395647 - L2 LINE L2 -609 2705 2542 680 219 131 12 chr1 28269063 28269223 -214395130 + MER5A DNA MER1_type 10 188 -1 2254 75 12 56 chr1 28269349 28269669 -214394684 + AluSg1 SINE Alu 1 306 -3 466 97 0 0 chr1 28269677 28269739 -214394614 + Alu SINE Alu 1 62 -256 261 0 0 0 chr1 28469926 28469955 -214194398 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 497 318 68 17 chr1 28470156 28470332 -214194021 - MIR SINE MIR -66 196 12 231 326 21 11 chr1 28473580 28473675 -214190678 - MIR3 SINE MIR -51 157 62 343 324 173 11 chr1 28474035 28474214 -214190139 - MIR SINE MIR -9 253 46 256 336 67 25 chr1 28475062 28475181 -214189172 + L2 LINE L2 3100 3223 -49 1628 86 0 9 chr1 28475310 28475530 -214188823 - AluY SINE Alu -11 300 83 2120 103 0 17 chr1 28475541 28475833 -214188520 - AluSq SINE Alu -24 289 3 315 338 88 44 chr1 28475911 28476207 -214188146 - L2 LINE L2 0 3313 3005 190 329 85 0 chr1 28476508 28476590 -214187763 + MIR SINE MIR 59 147 -115 554 281 0 27 chr1 28476933 28477118 -214187235 + (TG)n Simple_repeat Simple_repeat 1 180 0 612 268 78 37 chr1 28477958 28478196 -214186157 - MIR SINE MIR -8 254 3 559 353 168 10 chr1 28478267 28478772 -214185581 - L3 LINE CR1 -509 1068 484 656 279 64 10 chr1 28480071 28480275 -214184078 + MIR SINE MIR 11 225 -37 2075 118 0 46 chr1 28480524 28480699 -214183654 - AluSx SINE Alu -4 308 153 2174 105 7 0 chr1 28480699 28480994 -214183359 - AluSx SINE Alu -15 297 1 2075 118 0 46 chr1 28480994 28481141 -214183212 - AluSx SINE Alu -159 153 1 2435 63 0 0 chr1 28481188 28481488 -214182865 - AluY SINE Alu -9 302 3 2228 280 82 24 chr1 28481542 28482739 -214181614 - L1ME3A LINE L1 -220 5950 4824 1898 140 3 34 chr1 28482739 28483061 -214181292 - AluJb SINE Alu 0 312 1 2228 280 82 24 chr1 28483061 28483406 -214180947 - L1ME3A LINE L1 -1346 4824 4500 2197 106 0 13 chr1 28483406 28483707 -214180646 - AluSx SINE Alu -15 297 1 2228 280 82 24 chr1 28483707 28484198 -214180155 - L1ME3A LINE L1 -1670 4500 3787 1797 175 0 40 chr1 28484213 28484538 -214179815 - AluJb SINE Alu 0 312 1 483 305 0 81 chr1 28484538 28484735 -214179618 - L1ME3A LINE L1 -2643 3503 3323 2253 97 0 3 chr1 28484769 28485068 -214179285 - AluSx SINE Alu -11 301 4 452 265 10 12 chr1 28485080 28485233 -214179120 - MIR SINE MIR -60 148 4 2174 112 0 16 chr1 28485693 28486006 -214178347 + AluSx SINE Alu 2 309 -3 502 249 115 54 chr1 28486438 28486631 -214177722 + MIR SINE MIR 4 203 -59 300 226 283 19 chr1 28486828 28486934 -214177419 - MIR3 SINE MIR -64 144 11 533 318 90 20 chr1 28487721 28487966 -214176387 - MIR SINE MIR 0 262 1 493 296 7 0 chr1 28488007 28488159 -214176194 - MER103 DNA DNA -3 163 11 293 169 51 0 chr1 28488262 28488321 -214176032 + MIR SINE MIR 92 153 -55 466 276 6 6 chr1 28488321 28488477 -214175876 + L1MEc LINE L1 43 198 -6198 255 311 0 37 chr1 28488642 28488777 -214175576 - L2 LINE L2 -222 3050 2921 5524 122 108 31 chr1 28488923 28489300 -214175053 + Tigger3b DNA MER2_type 1 347 -2681 3547 60 0 0 chr1 28489300 28489730 -214174623 - L1PA5 LINE L1 0 6154 5725 5524 122 108 31 chr1 28489730 28489862 -214174491 + Tigger3b DNA MER2_type 347 467 -2561 330 26 0 0 chr1 28489862 28489901 -214174452 + (TG)n Simple_repeat Simple_repeat 2 40 0 5524 122 108 31 chr1 28489901 28490266 -214174087 + Tigger3b DNA MER2_type 467 802 -2226 2245 97 0 3 chr1 28490266 28490565 -214173788 - AluSg SINE Alu -12 298 1 5524 122 108 31 chr1 28490565 28490828 -214173525 + Tigger3b DNA MER2_type 802 1228 -3 326 350 58 0 chr1 28491298 28491418 -214172935 - MIR3 SINE MIR 0 208 82 606 306 87 5 chr1 28492673 28492892 -214171461 - MIR SINE MIR -5 257 21 913 259 4 32 chr1 28493595 28493842 -214170511 - MIR SINE MIR 0 262 23 598 333 34 58 chr1 28494045 28494457 -214169896 - L2 LINE L2 0 3272 2871 201 74 0 0 chr1 28494879 28494906 -214169447 + (TCC)n Simple_repeat Simple_repeat 3 29 0 222 167 30 30 chr1 28494907 28494973 -214169380 + (TCTCTG)n Simple_repeat Simple_repeat 5 70 0 2428 78 13 0 chr1 28495466 28495773 -214168580 - AluSq SINE Alu -2 311 1 1087 128 53 88 chr1 28495836 28496031 -214168322 - AluJo SINE Alu -10 302 115 1758 163 7 0 chr1 28496031 28496313 -214168040 + AluJb SINE Alu 29 312 0 1087 128 53 88 chr1 28496313 28496343 -214168010 - AluJo SINE Alu -197 115 85 1473 125 9 30 chr1 28496458 28496690 -214167663 + AluJo SINE Alu 1 227 -85 233 276 40 13 chr1 28496849 28496925 -214167428 - MIR SINE MIR -93 169 92 364 226 226 15 chr1 28496940 28497073 -214167280 + MER5A DNA MER1_type 27 187 -2 202 335 0 15 chr1 28497082 28497164 -214167189 - MIR SINE MIR -111 97 16 892 295 13 8 chr1 28497272 28497506 -214166847 - MIR SINE MIR 0 262 28 192 305 49 37 chr1 28499928 28500010 -214164343 - MIR SINE MIR -81 127 45 * 512 325 48 26 chr1 28499989 28500217 -214164136 + MIR SINE MIR 13 245 -17 1574 225 86 77 chr1 28501170 28501290 -214163063 - L1ME3A LINE L1 -10 6160 6043 1726 189 3 0 chr1 28501290 28501581 -214162772 + AluJo SINE Alu 1 292 -20 1574 225 86 77 chr1 28501581 28502122 -214162231 - L1ME3A LINE L1 -127 6043 5493 2195 108 0 3 chr1 28502300 28502595 -214161758 - AluSx SINE Alu -18 294 1 249 119 0 0 chr1 28503879 28503921 -214160432 + (TG)n Simple_repeat Simple_repeat 2 43 0 490 328 29 18 chr1 28504041 28504212 -214160141 + MIR SINE MIR 4 176 -86 797 300 184 13 chr1 28504212 28504662 -214159691 - MLT1K LTR MaLR 0 588 62 520 282 74 5 chr1 28505101 28505289 -214159064 - MIR SINE MIR -30 232 23 304 228 0 63 chr1 28505335 28505414 -214158939 + MIR SINE MIR 109 182 -80 646 300 150 17 chr1 28507750 28508103 -214156250 - L2 LINE L2 -4 3309 2910 384 243 98 7 chr1 28508594 28508732 -214155621 + MIR3 SINE MIR 14 168 -40 1749 150 3 56 chr1 28508737 28509057 -214155296 - AluJb SINE Alu -9 303 1 427 346 145 14 chr1 28509067 28509281 -214155072 - MIR SINE MIR -14 248 7 491 301 27 33 chr1 28509316 28509499 -214154854 + MIR SINE MIR 57 238 -24 376 360 67 24 chr1 28509983 28510314 -214154039 - L2 LINE L2 -49 3223 2879 313 291 126 0 chr1 28510381 28510484 -214153869 - MIR SINE MIR -64 144 29 186 143 0 0 chr1 28510489 28510524 -214153829 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 24 0 0 chr1 28511863 28511905 -214152448 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 429 277 17 8 chr1 28514370 28514489 -214149864 + MIR SINE MIR 93 212 -50 237 246 14 29 chr1 28514617 28514686 -214149667 + MIR3 SINE MIR 113 180 -28 312 292 204 0 chr1 28514891 28515028 -214149325 + MIR SINE MIR 79 243 -19 407 265 76 0 chr1 28515134 28515266 -214149087 + MIR3 SINE MIR 3 144 -64 549 228 92 33 chr1 28515516 28515783 -214148570 + MLT1H LTR MaLR 79 374 -168 205 375 55 16 chr1 28515931 28516059 -214148294 + L2 LINE L2 3124 3256 -16 205 320 196 16 chr1 28516163 28516357 -214147996 + MIR SINE MIR 20 248 -14 611 348 9 18 chr1 28516423 28516647 -214147706 - MIR SINE MIR -33 229 8 605 262 54 6 chr1 28517352 28517520 -214146833 - MIR SINE MIR -14 248 73 618 294 58 71 chr1 28517532 28518082 -214146271 + L2 LINE L2 2679 3271 -1 315 206 0 16 chr1 28518081 28518144 -214146209 - MIR SINE MIR -187 75 14 * 433 289 77 13 chr1 28518164 28518320 -214146033 + MIR3 SINE MIR 24 189 -19 347 310 70 25 chr1 28518515 28518673 -214145680 - MIR SINE MIR -76 186 22 438 315 43 6 chr1 28519254 28519416 -214144937 - MIR SINE MIR -76 186 19 716 199 0 78 chr1 28519979 28520174 -214144179 + LTR41 LTR ERVL 3 182 -591 395 260 138 6 chr1 28520539 28520720 -214143633 + LTR50 LTR ERVL 589 793 -2 9216 298 59 30 chr1 28521028 28522494 -214141859 + ERVL LTR ERVL 352 1774 -3990 2049 78 11 4 chr1 28522494 28522775 -214141578 + L1PB2 LINE L1 5867 6149 -2 9216 298 59 30 chr1 28522775 28525450 -214138903 + ERVL LTR ERVL 1774 4686 -1078 8609 48 3 0 chr1 28525798 28526764 -214137589 - LTR5 LTR ERVK 0 969 1 475 204 136 8 chr1 28527078 28527210 -214137143 - LTR41 LTR ERVL -624 149 1 1728 303 37 15 chr1 28527210 28527861 -214136492 + ERVL LTR ERVL 4811 5475 -289 2475 84 0 0 chr1 28527871 28528179 -214136174 - AluY SINE Alu -3 308 1 1573 113 0 5 chr1 28528181 28528403 -214135950 - L1PA15 LINE L1 -2 6163 5943 446 210 73 16 chr1 28528714 28528838 -214135515 + LTR41 LTR ERVL 19 149 -624 2235 109 0 0 chr1 28528865 28529182 -214135171 - AluSx SINE Alu 0 317 1 274 190 0 0 chr1 28529187 28529245 -214135108 + LTR50 LTR ERVL 714 771 -24 306 154 64 77 chr1 28529456 28529534 -214134819 + MIR SINE MIR 17 93 -115 902 159 139 50 chr1 28529749 28529950 -214134403 + MER20 DNA MER1_type 1 219 0 368 341 39 0 chr1 28529952 28530081 -214134272 - MIR3 SINE MIR -68 140 7 213 304 92 43 chr1 28530766 28530950 -214133403 + L2 LINE L2 2909 3101 -171 238 276 61 75 chr1 28531132 28531346 -214133007 + LTR16C LTR ERVL 251 461 -30 260 323 139 30 chr1 28531464 28531665 -214132688 + L2 LINE L2 3048 3270 -2 399 159 0 127 chr1 28532321 28532447 -214131906 - MIR SINE MIR -119 143 34 237 230 79 31 chr1 28532565 28532687 -214131666 + MIR SINE MIR 33 192 -70 197 196 18 0 chr1 28533079 28533135 -214131218 + GA-rich Low_complexity Low_complexity 1 57 0 554 332 106 5 chr1 28533216 28533415 -214130938 + MIR SINE MIR 28 246 -16 2515 88 0 0 chr1 28533687 28533992 -214130361 + AluSx SINE Alu 1 305 -7 221 333 12 0 chr1 28534161 28534242 -214130111 - MIR SINE MIR -82 126 45 234 241 0 0 chr1 28534773 28534827 -214129526 + (CA)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chr1 28535441 28535465 -214128888 + AT_rich Low_complexity Low_complexity 1 24 0 2367 103 0 0 chr1 28535979 28536279 -214128074 - AluSg SINE Alu -10 300 1 2190 139 7 0 chr1 28536286 28536749 -214127604 - AluSx SINE Alu 0 465 1 289 292 62 0 chr1 28537173 28537269 -214127084 - L2 LINE L2 -25 3247 3146 272 296 20 10 chr1 28537285 28537383 -214126970 - MIR SINE MIR -81 127 29 439 329 94 5 chr1 28537838 28538051 -214126302 - MLT1K LTR MaLR -290 298 67 187 327 103 0 chr1 28538253 28538360 -214125993 + L2 LINE L2 2919 3036 -277 361 314 17 0 chr1 28539388 28539506 -214124847 + L2 LINE L2 2933 3052 -220 211 280 178 25 chr1 28539540 28539658 -214124695 + L2 LINE L2 3136 3271 -1 542 327 14 23 chr1 28539702 28539919 -214124434 - MIR SINE MIR -14 248 34 563 234 72 36 chr1 28539927 28540094 -214124259 - L2 LINE L2 -19 3294 3122 1559 133 162 44 chr1 28540102 28540441 -214123912 - MLT1B LTR MaLR -2 388 10 288 304 179 5 chr1 28540479 28540663 -214123690 - L2 LINE L2 -280 3033 2818 359 308 36 0 chr1 28540740 28540882 -214123471 - MIR3 SINE MIR -37 171 20 2248 119 10 6 chr1 28541356 28541667 -214122686 + AluSx SINE Alu 1 312 0 296 282 38 38 chr1 28541669 28541800 -214122553 - MIR SINE MIR -129 133 3 371 183 0 0 chr1 28541840 28541900 -214122453 + MIR SINE MIR 90 149 -59 292 291 55 9 chr1 28542031 28542141 -214122212 - MIR SINE MIR -89 173 59 254 250 102 41 chr1 28542277 28542473 -214121880 + L2 LINE L2 2770 2977 -337 551 309 178 18 chr1 28542660 28543042 -214121311 + L2 LINE L2 2871 3313 0 608 216 6 31 chr1 28544178 28544340 -214120013 + MLT1K LTR MaLR 322 479 -109 365 197 171 60 chr1 28544657 28544774 -214119579 - MIR SINE MIR -92 170 41 773 272 104 21 chr1 28544905 28545280 -214119073 + L2 LINE L2 2002 2407 -907 423 213 46 2 chr1 28545488 28545615 -214118738 - L1MC3 LINE L1 0 7995 7679 2450 81 0 0 chr1 28545624 28545922 -214118431 - AluY SINE Alu -13 298 1 276 253 124 59 chr1 28545986 28546172 -214118181 + MER102a DNA MER1_type 116 313 -17 338 231 0 0 chr1 28546254 28546319 -214118034 - L2 LINE L2 -1 3271 3207 607 284 138 0 chr1 28546808 28547026 -214117327 - MIR SINE MIR -4 258 11 8499 48 11 0 chr1 28547049 28548007 -214116346 + LTR5 LTR ERVK 1 969 0 2715 92 2 20 chr1 28548076 28548479 -214115874 + L1MA2 LINE L1 5909 6304 0 187 378 14 0 chr1 28548493 28548567 -214115786 + MIR SINE MIR 186 260 -2 288 220 156 28 chr1 28549173 28549282 -214115071 + MIR3 SINE MIR 46 168 -40 181 259 74 0 chr1 28549544 28549598 -214114755 - MIR SINE MIR -77 185 128 289 325 24 16 chr1 28550372 28550495 -214113858 + MIR SINE MIR 21 144 -64 891 153 0 0 chr1 28550566 28550697 -214113656 - FLAM_C SINE Alu -2 131 1 344 340 93 34 chr1 28550765 28551056 -214113297 - L2 LINE L2 0 3313 3006 481 261 0 9 chr1 28551086 28551201 -214113152 + MER81 DNA DNA 1 114 0 974 221 42 5 chr1 28551315 28551528 -214112825 - MIR SINE MIR -29 233 13 243 270 20 125 chr1 28551552 28551752 -214112601 - MIR SINE MIR 0 262 84 797 147 0 33 chr1 28552900 28553084 -214111269 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 640 89 20 0 chr1 28553082 28553183 -214111170 + (TC)n Simple_repeat Simple_repeat 2 104 0 * 201 162 27 0 chr1 28553582 28553619 -214110734 + MIR3 SINE MIR 168 205 -3 244 259 84 36 chr1 28554056 28554222 -214110131 - L2 LINE L2 -304 3009 2836 1874 265 80 32 chr1 28554819 28555472 -214108881 - MER115 DNA AcHobo -5 688 5 1815 151 20 94 chr1 28555982 28556386 -214107967 - MLT1A2 LTR MaLR 0 374 1 242 143 0 0 chr1 28556563 28556605 -214107748 + Alu SINE Alu 260 301 -1 670 325 21 4 chr1 28556868 28557111 -214107242 - MIR SINE MIR -14 248 2 466 213 110 76 chr1 28557908 28558171 -214106182 - MLT1H LTR MaLR -197 352 81 252 318 84 19 chr1 28558210 28558317 -214106036 + MIR3 SINE MIR 88 201 -7 478 320 115 8 chr1 28559263 28559497 -214104856 - MIR SINE MIR -1 261 3 4274 139 27 14 chr1 28560382 28561025 -214103328 - L1MA4 LINE L1 -159 6323 5667 1658 107 5 0 chr1 28561025 28561240 -214103113 - AluSg/x SINE Alu -18 294 79 4274 139 27 14 chr1 28561240 28561367 -214102986 - L1MA4 LINE L1 -815 5667 5543 627 126 19 0 chr1 28561367 28561470 -214102883 - AluYb8 SINE Alu 0 318 214 15026 174 28 26 chr1 28561473 28563793 -214100560 - L1MA4 LINE L1 -781 5547 3234 3688 54 2 5 chr1 28563793 28564238 -214100115 - MLT2A1 LTR ERVL 0 444 1 15026 174 28 26 chr1 28564238 28564890 -214099463 - L1MA4 LINE L1 -3094 3234 2585 2071 109 43 23 chr1 28564890 28565193 -214099160 - AluSg SINE Alu -1 309 1 15026 174 28 26 chr1 28565193 28565342 -214099011 - L1MA4 LINE L1 -3743 2585 2438 2347 109 0 3 chr1 28565342 28565646 -214098707 - AluSx SINE Alu -9 303 1 15026 174 28 26 chr1 28565646 28568054 -214096299 - L1MA4 LINE L1 -3890 2438 2 289 337 107 18 chr1 28568137 28568306 -214096047 - MER5A DNA MER1_type -4 185 2 556 289 108 54 chr1 28568366 28568774 -214095579 + MLT1J2 LTR MaLR 20 449 -1 1094 161 0 0 chr1 28568863 28569024 -214095329 + AluSp SINE Alu 136 296 -17 1760 180 0 47 chr1 28569071 28569388 -214094965 - AluJb SINE Alu -10 302 1 22 70 0 0 chr1 28569641 28569684 -214094669 + AT_rich Low_complexity Low_complexity 1 43 0 452 269 6 56 chr1 28570099 28570259 -214094094 + MIR3 SINE MIR 37 188 -20 473 320 87 10 chr1 28570511 28570717 -214093636 - MIR SINE MIR -6 256 35 504 237 167 32 chr1 28571927 28572113 -214092240 + MIR SINE MIR 20 230 -32 251 309 141 35 chr1 28572567 28572823 -214091530 - L2 LINE L2 -2 3270 2988 627 181 136 4 chr1 28572857 28573056 -214091297 - MLT1H1 LTR MaLR 0 555 292 294 277 24 0 chr1 28573093 28573176 -214091177 - MLT1H1 LTR MaLR -304 286 202 3236 145 23 33 chr1 28573178 28573358 -214090995 + MER49 LTR ERV1 1 181 -742 2390 84 0 7 chr1 28573358 28573657 -214090696 - AluY SINE Alu -14 297 1 3236 145 23 33 chr1 28573657 28574049 -214090304 + MER49 LTR ERV1 181 567 -356 1148 212 9 0 chr1 28574045 28574267 -214090086 + MER49 LTR ERV1 686 909 -14 * 1890 154 7 10 chr1 28574267 28574560 -214089793 - AluJo SINE Alu -16 296 5 640 292 39 0 chr1 28574610 28574788 -214089565 - MLT1H1 LTR MaLR -370 185 1 256 331 24 16 chr1 28574951 28575078 -214089275 - L2 LINE L2 -212 3060 2933 207 281 0 24 chr1 28575379 28575461 -214088892 - L2 LINE L2 -685 2629 2550 661 248 105 34 chr1 28575477 28575715 -214088638 - MIR SINE MIR -2 260 6 277 247 124 0 chr1 28576059 28576148 -214088205 - MIR SINE MIR -88 120 21 653 250 112 27 chr1 28576156 28576231 -214088122 + MIR SINE MIR 19 86 -176 2540 97 8 0 chr1 28576231 28576602 -214087751 - THE1C LTR MaLR -1 374 1 653 250 112 27 chr1 28576602 28576750 -214087603 + MIR SINE MIR 86 261 -1 907 287 46 4 chr1 28576778 28577015 -214087338 + MIR SINE MIR 6 252 -10 578 230 112 1 chr1 28577341 28577536 -214086817 - MIR SINE MIR -20 242 29 329 244 130 9 chr1 28577807 28577922 -214086431 + MIR3 SINE MIR 40 168 -40 324 233 135 61 chr1 28577948 28578111 -214086242 - MIR SINE MIR -13 249 75 258 327 64 32 chr1 28578648 28578868 -214085485 + MIR SINE MIR 14 240 -22 230 325 36 12 chr1 28579068 28579151 -214085202 - MIR SINE MIR -70 192 108 458 275 56 0 chr1 28579317 28579477 -214084876 - MIR SINE MIR -80 182 14 216 259 27 122 chr1 28580479 28580577 -214083776 + L2 LINE L2 3140 3221 -51 477 110 0 0 chr1 28580577 28580650 -214083703 + (TGAA)n Simple_repeat Simple_repeat 4 76 0 216 259 27 122 chr1 28580650 28580698 -214083655 + L2 LINE L2 3221 3272 0 585 255 62 46 chr1 28580713 28580972 -214083381 + L3 LINE CR1 1251 1513 -64 260 320 8 31 chr1 28581292 28581420 -214082933 + MIR SINE MIR 24 148 -60 351 286 9 45 chr1 28581460 28581572 -214082781 + MIR SINE MIR 80 187 -75 416 135 14 0 chr1 28581623 28581697 -214082656 + CT-rich Low_complexity Low_complexity 3 77 0 2213 108 26 10 chr1 28581743 28582048 -214082305 + AluSg SINE Alu 1 310 0 252 86 0 0 chr1 28582952 28582987 -214081366 + (TC)n Simple_repeat Simple_repeat 2 36 0 365 0 22 0 chr1 28582988 28583033 -214081320 + (CA)n Simple_repeat Simple_repeat 2 47 0 210 312 107 20 chr1 28583426 28583583 -214080770 - MIR SINE MIR -68 140 20 541 240 112 52 chr1 28584230 28584463 -214079890 + MIR SINE MIR 16 262 0 493 260 97 7 chr1 28584825 28584979 -214079374 - MIR3 SINE MIR -28 180 13 272 271 0 0 chr1 28585986 28586056 -214078297 + (TAA)n Simple_repeat Simple_repeat 2 71 0 353 253 58 0 chr1 28586116 28586203 -214078150 - MIR SINE MIR -44 218 127 484 246 84 134 chr1 28586228 28586499 -214077854 + LTR41 LTR ERVL 435 685 -88 889 187 6 6 chr1 28586499 28586665 -214077688 - FRAM SINE Alu 0 166 1 484 246 84 134 chr1 28586665 28586750 -214077603 + LTR41 LTR ERVL 685 773 0 347 175 42 31 chr1 28586804 28586897 -214077456 - MER58 DNA MER1_type -109 106 1 2092 119 35 91 chr1 28586913 28587341 -214077012 + MSTA LTR MaLR 1 404 -24 2691 129 2 0 chr1 28587352 28587763 -214076590 + MSTA-int LTR MaLR 1 412 -1239 12667 36 2 0 chr1 28587776 28590124 -214074229 - L1PA5 LINE L1 -11 6143 3793 384 256 12 101 chr1 28590271 28590439 -214073914 - MLT1J LTR MaLR -203 308 156 233 304 36 36 chr1 28590700 28590838 -214073515 - L1ME4a LINE L1 -28 6093 5956 671 325 26 18 chr1 28590844 28591185 -214073168 - L1ME4a LINE L1 -213 5908 5565 334 150 0 33 chr1 28592192 28592276 -214072077 - AluJ/FRAM SINE Alu 0 308 227 540 202 40 16 chr1 28592298 28592422 -214071931 + MLT1E LTR MaLR 46 172 -421 974 278 92 27 chr1 28592535 28592906 -214071447 + MLT1E LTR MaLR 199 593 0 3920 175 37 55 chr1 28592967 28594158 -214070195 + L1MB8 LINE L1 4957 6145 -33 636 207 173 74 chr1 28594158 28594429 -214069924 + MLT1K LTR MaLR 290 587 -1 377 317 44 17 chr1 28594462 28594642 -214069711 - MIR SINE MIR -55 207 23 1196 205 52 52 chr1 28595096 28595482 -214068871 + MLT2D LTR ERVL 29 414 0 247 179 330 9 chr1 28595561 28595673 -214068680 + LTR16A1 LTR ERVL 305 452 -5 472 365 31 7 chr1 28595763 28596056 -214068297 + HERV16 LTR ERVL 117 416 -4580 966 336 67 28 chr1 28596086 28596829 -214067524 + HERV16 LTR ERVL 461 1232 -3764 2300 226 57 16 chr1 28597041 28597896 -214066457 + L1ME1 LINE L1 5145 5981 -185 220 316 26 26 chr1 28598788 28598902 -214065451 - MIR SINE MIR -20 242 129 262 219 151 42 chr1 28599392 28599511 -214064842 - MIR SINE MIR -117 145 14 289 235 0 15 chr1 28599667 28599735 -214064618 - MER96 DNA MER1_type? -26 149 83 255 311 123 9 chr1 28600330 28600436 -214063917 - MIR3 SINE MIR -9 199 82 187 273 182 23 chr1 28601091 28601179 -214063174 + MIR SINE MIR 12 113 -149 204 225 0 0 chr1 28601764 28601804 -214062549 + (TG)n Simple_repeat Simple_repeat 2 41 0 193 326 31 20 chr1 28603149 28603247 -214061106 - MIR3 SINE MIR -28 180 82 223 91 0 0 chr1 28603459 28603492 -214060861 - L2 LINE L2 -223 3049 3017 3476 104 5 61 chr1 28603955 28604513 -214059840 + MER1A DNA MER1_type 1 527 0 423 282 0 69 chr1 28604678 28604809 -214059544 + MIR SINE MIR 21 142 -120 297 244 51 114 chr1 28604886 28605062 -214059291 - MIR SINE MIR -4 258 94 673 265 77 4 chr1 28605067 28605301 -214059052 + L1MEc LINE L1 134 384 -6012 895 130 0 8 chr1 28605322 28605453 -214058900 + FRAM SINE Alu 35 164 -12 2816 268 69 3 chr1 28605464 28606383 -214057970 + L1MEc LINE L1 398 1376 -5020 2418 175 73 9 chr1 28606401 28606961 -214057392 + L1M4 LINE L1 4615 5210 -936 860 256 52 0 chr1 28607142 28607372 -214056981 - MIR SINE MIR 0 262 21 255 329 54 48 chr1 28607415 28607582 -214056771 - MIR SINE MIR -1 261 94 201 302 0 0 chr1 28608814 28608867 -214055486 + MIR3 SINE MIR 144 196 -12 438 241 48 8 chr1 28609074 28609258 -214055095 + MIR SINE MIR 5 192 -68 298 246 86 13 chr1 28609653 28609763 -214054590 + MIR SINE MIR 61 175 -78 273 248 8 94 chr1 28609788 28609905 -214054448 - L2 LINE L2 -6 3307 3201 259 278 33 0 chr1 28610945 28611035 -214053318 + MIR SINE MIR 100 192 -70 412 324 152 5 chr1 28611382 28611586 -214052767 - MIR SINE MIR -9 253 20 193 224 69 0 chr1 28611735 28611793 -214052560 + MIR SINE MIR 84 145 -63 486 363 42 29 chr1 28611840 28612080 -214052273 + MIR SINE MIR 8 250 -12 495 273 43 0 chr1 28612665 28612804 -214051549 - MIR3 SINE MIR -59 149 5 315 332 21 10 chr1 28612900 28613093 -214051260 - L2 LINE L2 -526 2788 2594 384 260 123 26 chr1 28613147 28613301 -214051052 - MIR SINE MIR -60 202 34 1090 245 95 25 chr1 28613642 28614010 -214050343 - MLT1I LTR MaLR 0 409 16 1131 279 82 43 chr1 28614020 28614978 -214049375 + L2 LINE L2 2309 3300 -13 207 0 0 0 chr1 28614978 28615001 -214049352 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 315 138 62 0 chr1 28615851 28615916 -214048437 - L1P LINE L1 -4215 1931 1863 * 4697 112 3 3 chr1 28615912 28616593 -214047760 - L1P LINE L1 -5465 681 1 2295 201 92 53 chr1 28616595 28617268 -214047085 + MST-int LTR MaLR 400 1098 -553 2681 302 73 46 chr1 28617268 28618581 -214045772 + MERVL LTR ERVL 1916 3264 -2221 493 265 61 44 chr1 28618681 28618862 -214045491 + MIR SINE MIR 2 185 -77 574 290 32 14 chr1 28618886 28619103 -214045250 - MIR SINE MIR -37 225 5 326 265 53 68 chr1 28619201 28619333 -214045020 + MER5A DNA MER1_type 57 186 -3 206 372 18 35 chr1 28619395 28619508 -214044845 + MIR SINE MIR 43 153 -55 212 237 0 0 chr1 28619553 28619591 -214044762 + MIR SINE MIR 50 87 -175 2464 86 0 0 chr1 28619593 28619894 -214044459 - AluY SINE Alu -10 301 1 369 269 56 0 chr1 28619895 28620003 -214044350 + MIR SINE MIR 72 185 -77 348 333 62 15 chr1 28620050 28620245 -214044108 + MIR SINE MIR 15 218 -44 21 36 0 0 chr1 28620262 28620290 -214044063 + AT_rich Low_complexity Low_complexity 1 28 0 305 353 69 6 chr1 28621294 28621467 -214042886 + MIR SINE MIR 51 234 -28 247 279 19 67 chr1 28621841 28621945 -214042408 - HAL1b LINE L1 -54 1294 1196 505 203 16 24 chr1 28622676 28622799 -214041554 - MIR SINE MIR -113 149 28 2308 69 39 20 chr1 28623249 28623554 -214040799 + AluY SINE Alu 1 311 0 439 251 69 35 chr1 28623747 28623978 -214040375 + L1ME4a LINE L1 5830 6068 -53 537 178 212 14 chr1 28624021 28624167 -214040186 - MIR SINE MIR -44 218 44 380 323 36 6 chr1 28624986 28625153 -214039200 - MIR SINE MIR -70 192 21 487 306 103 25 chr1 28625264 28625545 -214038808 + L2 LINE L2 3010 3312 -1 362 260 96 21 chr1 28625570 28625717 -214038636 - MIR SINE MIR -62 146 42 346 283 80 0 chr1 28626567 28626680 -214037673 - MIR SINE MIR -63 145 24 696 268 78 42 chr1 28627450 28627756 -214036597 - L2 LINE L2 -2 3311 2995 520 330 30 13 chr1 28627848 28628081 -214036272 + L2 LINE L2 2584 2820 -494 312 375 76 11 chr1 28628084 28628348 -214036005 + L2 LINE L2 2985 3265 -7 489 124 26 88 chr1 28629524 28629574 -214034779 - MSTB2 LTR MaLR -351 106 54 2388 94 0 7 chr1 28629574 28629881 -214034472 - AluY SINE Alu -6 305 1 489 124 26 88 chr1 28629881 28629943 -214034410 - MSTB2 LTR MaLR -403 54 1 309 230 40 0 chr1 28630456 28630530 -214033823 + MIR SINE MIR 42 118 -90 394 342 19 19 chr1 28630988 28631143 -214033210 + L3 LINE CR1 1281 1435 -142 209 378 20 0 chr1 28631875 28631973 -214032380 + MIR SINE MIR 43 142 -66 441 322 17 43 chr1 28632122 28632355 -214031998 + L2 LINE L2 3042 3268 -4 1800 175 34 11 chr1 28632464 28632842 -214031511 + MLT1B LTR MaLR 4 390 0 656 265 44 5 chr1 28633090 28633294 -214031059 - MIR SINE MIR -48 214 3 377 309 24 0 chr1 28633530 28633653 -214030700 + L2 LINE L2 3134 3259 -13 203 200 154 0 chr1 28634089 28634154 -214030199 - MIR SINE MIR -72 136 62 340 339 58 26 chr1 28634451 28634764 -214029589 - L2 LINE L2 0 3313 2991 232 292 14 0 chr1 28634784 28634856 -214029497 - MER94 DNA DNA -58 76 4 225 358 12 0 chr1 28634866 28634947 -214029406 + MIR SINE MIR 181 262 0 278 203 14 14 chr1 28635701 28635770 -214028583 + L2 LINE L2 3214 3282 -31 364 276 126 45 chr1 28635909 28636108 -214028245 - MIR SINE MIR -21 241 27 439 243 92 32 chr1 28636180 28636365 -214027988 - MLT1G LTR MaLR -7 583 388 438 273 98 0 chr1 28637456 28637599 -214026754 - MIR SINE MIR 0 262 106 1752 123 119 0 chr1 28638386 28638655 -214025698 + AluSx SINE Alu 1 301 -11 188 67 33 0 chr1 28638795 28638825 -214025528 + (CCCCCA)n Simple_repeat Simple_repeat 3 33 0 978 188 0 70 chr1 28638847 28639060 -214025293 - LTR47B LTR ERVL 0 443 246 529 282 66 42 chr1 28639065 28639352 -214025001 - LTR47B LTR ERVL -149 294 1 2392 81 0 0 chr1 28639420 28639727 -214024626 - AluSx SINE Alu 0 307 1 280 288 65 7 chr1 28640217 28640356 -214023997 + LTR16C LTR ERVL 191 337 -154 204 234 221 48 chr1 28640390 28640535 -214023818 + MIR SINE MIR 73 242 -20 665 281 158 42 chr1 28640566 28641065 -214023288 + MLT1K LTR MaLR 16 572 -16 309 267 58 0 chr1 28641122 28641208 -214023145 + MIR3 SINE MIR 112 202 -6 248 180 79 79 chr1 28641560 28641649 -214022704 - MIR SINE MIR -77 131 43 247 328 26 45 chr1 28642374 28642528 -214021825 + MIR SINE MIR 56 202 -60 298 318 39 16 chr1 28642637 28642766 -214021587 + MIR SINE MIR 79 210 -52 384 314 73 20 chr1 28643315 28643560 -214020793 + L2 LINE L2 2618 2875 -439 236 286 87 48 chr1 28643695 28643821 -214020532 + L2 LINE L2 3142 3272 0 2371 100 3 0 chr1 28644019 28644319 -214020034 - AluSx SINE Alu -11 301 1 431 189 32 11 chr1 28644449 28644544 -214019809 + MIR SINE MIR 20 116 -146 1291 270 128 63 chr1 28645032 28645564 -214018789 - HAL1b LINE L1 -7 1341 845 2005 137 23 29 chr1 28645564 28645871 -214018482 - AluJo SINE Alu -6 306 2 1291 270 128 63 chr1 28645871 28646514 -214017839 - HAL1b LINE L1 -503 845 89 438 263 114 34 chr1 28647771 28647946 -214016407 - MER117 DNA MER1_type -6 191 3 379 299 90 6 chr1 28647972 28648139 -214016214 + MIR SINE MIR 22 202 -60 1402 258 26 54 chr1 28648139 28648195 -214016158 - MLT1H LTR MaLR -10 539 483 1994 132 0 21 chr1 28648195 28648520 -214015833 + AluSx SINE Alu 1 319 0 1402 258 26 54 chr1 28648520 28648959 -214015394 - MLT1H LTR MaLR -66 483 57 1107 153 41 29 chr1 28648964 28649206 -214015147 - MSTB1 LTR MaLR -4 428 184 438 169 52 0 chr1 28649196 28649273 -214015080 - MSTB1 LTR MaLR -376 81 1 * 375 143 0 48 chr1 28649273 28649357 -214014996 - MLT1H-int LTR MaLR 0 1735 1656 1572 176 115 40 chr1 28649501 28649926 -214014427 - MSTB2 LTR MaLR 0 457 1 365 274 71 0 chr1 28650512 28650625 -214013728 - L2 LINE L2 0 3313 3193 310 229 2 77 chr1 28650635 28650761 -214013592 - MLT1J2 LTR MaLR 0 450 370 407 201 7 89 chr1 28650803 28650845 -214013508 - MLT1J1 LTR MaLR -227 182 138 1930 201 57 5 chr1 28650845 28651249 -214013104 + MSTB LTR MaLR 2 426 0 407 201 7 89 chr1 28651249 28651344 -214013009 - MLT1J1 LTR MaLR -271 138 56 247 316 25 0 chr1 28652111 28652190 -214012163 - MIR SINE MIR -106 156 76 693 284 109 31 chr1 28652366 28652715 -214011638 - MLT1I LTR MaLR 0 409 34 191 236 127 0 chr1 28652974 28653029 -214011324 - MIR SINE MIR -70 192 131 928 268 80 27 chr1 28653039 28653557 -214010796 - L2 LINE L2 -13 3300 2756 325 311 115 0 chr1 28653602 28653750 -214010603 + MIR SINE MIR 92 256 -6 952 278 196 11 chr1 28654528 28654910 -214009443 + MLT1K LTR MaLR 136 588 0 203 276 35 35 chr1 28655747 28655834 -214008519 + L2 LINE L2 3186 3272 0 504 216 17 26 chr1 28655951 28656067 -214008286 - MER94 DNA DNA 0 134 20 316 319 0 0 chr1 28657300 28657413 -214006940 + L1MDb LINE L1 783 895 -5514 * 833 102 0 90 chr1 28657411 28657577 -214006776 + L1 LINE L1 1092 1242 -5165 * 3777 207 58 14 chr1 28657570 28658735 -214005618 + L1 LINE L1 2726 4045 -2361 218 275 217 8 chr1 28708843 28708963 -213955390 - L2 LINE L2 -803 2511 2367 302 288 92 49 chr1 28709095 28709258 -213955095 - MIR SINE MIR -3 259 90 2023 108 0 17 chr1 28709362 28709658 -213954695 - AluSg SINE Alu -13 297 7 338 198 66 22 chr1 28709691 28709782 -213954571 - MER103 DNA DNA -19 147 53 682 92 0 0 chr1 28710171 28710258 -213954095 + FRAM SINE Alu 59 145 -31 255 238 65 95 chr1 28710367 28710535 -213953818 - MIR SINE MIR -44 218 56 282 303 45 58 chr1 28710571 28710630 -213953723 - MLT1K LTR MaLR -15 573 515 2194 107 0 0 chr1 28710630 28710928 -213953425 + AluSx SINE Alu 1 298 -14 2222 102 3 0 chr1 28710931 28711234 -213953119 + AluSx SINE Alu 1 304 -8 282 303 45 58 chr1 28711234 28711325 -213953028 - MLT1K LTR MaLR -75 513 421 532 225 67 0 chr1 28711371 28711491 -213952862 - MIR SINE MIR -6 256 129 2095 91 0 0 chr1 28711611 28711886 -213952467 - AluSx SINE Alu -37 275 1 421 317 62 65 chr1 28712183 28712505 -213951848 - L2 LINE L2 -51 3221 2901 246 263 0 0 chr1 28713220 28713276 -213951077 - MIR SINE MIR -59 149 94 403 301 206 14 chr1 28713276 28713495 -213950858 + MIR SINE MIR 1 261 -1 371 83 0 0 chr1 28713790 28713838 -213950515 - Alu SINE Alu -252 48 1 1582 163 71 0 chr1 28714705 28714987 -213949366 + AluJb SINE Alu 3 304 -8 1728 132 64 0 chr1 28714989 28715285 -213949068 + AluSx SINE Alu 1 313 0 180 226 97 16 chr1 28715458 28715520 -213948833 + MER5B DNA MER1_type 65 131 -47 317 311 34 68 chr1 28715731 28715908 -213948445 + MIR3 SINE MIR 10 180 -28 1283 105 0 0 chr1 28716416 28716588 -213947765 + AluSg SINE Alu 1 172 -138 581 260 125 10 chr1 28716643 28716851 -213947502 - MIR SINE MIR 0 262 31 821 181 104 14 chr1 28717474 28717714 -213946639 - MER46C DNA MER2_type -1 337 17 222 303 26 26 chr1 28717796 28717872 -213946481 + L2 LINE L2 3127 3202 -70 1971 128 0 36 chr1 28717934 28718240 -213946113 + AluSx SINE Alu 1 295 -17 458 277 209 27 chr1 28718476 28718696 -213945657 + MIR SINE MIR 2 261 -1 979 202 18 0 chr1 28718883 28719051 -213945302 + FAM SINE Alu 4 174 -1 213 257 210 37 chr1 28719403 28719617 -213944736 - L2 LINE L2 -803 2511 2261 305 282 92 49 chr1 28719655 28719818 -213944535 - MIR SINE MIR -3 259 90 2213 93 0 17 chr1 28719921 28720223 -213944130 - AluSg SINE Alu -13 297 1 434 275 43 7 chr1 28720239 28720377 -213943976 - MER103 DNA DNA -8 158 16 263 287 74 28 chr1 28722520 28722628 -213941725 - MIR3 SINE MIR -48 160 48 22 0 0 0 chr1 28723034 28723056 -213941297 + AT_rich Low_complexity Low_complexity 1 22 0 4352 138 95 34 chr1 28723056 28723878 -213940475 + MER21A LTR ERV1 60 931 0 2164 128 0 0 chr1 28724041 28724353 -213940000 + AluSx SINE Alu 1 312 0 1923 152 3 3 chr1 28725337 28725640 -213938713 - AluSx SINE Alu -9 303 1 386 234 47 9 chr1 28726097 28726204 -213938149 - MIR SINE MIR -101 161 51 291 312 143 9 chr1 28726338 28726762 -213937591 - L2 LINE L2 -62 3210 2724 234 156 0 0 chr1 28727411 28727456 -213936897 + (TG)n Simple_repeat Simple_repeat 1 45 0 438 269 77 0 chr1 28727519 28727649 -213936704 + MIR3 SINE MIR 34 173 -35 2093 125 0 0 chr1 28729699 28729994 -213934359 + AluSx SINE Alu 1 295 -17 886 224 35 39 chr1 28731757 28732016 -213932337 - MIR SINE MIR -1 261 4 305 301 85 91 chr1 28732593 28732862 -213931491 - L2 LINE L2 -377 2937 2669 2144 107 0 0 chr1 28732862 28733160 -213931193 + AluY SINE Alu 1 298 -13 305 301 85 91 chr1 28733160 28733242 -213931111 - L2 LINE L2 -645 2669 2588 950 195 65 20 chr1 28733375 28733575 -213930778 + MER3 DNA MER1_type 1 209 0 2302 94 0 0 chr1 28733867 28734166 -213930187 + AluSx SINE Alu 1 299 -13 2272 110 0 0 chr1 28734166 28734476 -213929877 + AluSg SINE Alu 1 310 0 543 352 41 41 chr1 28735635 28736073 -213928280 - L2 LINE L2 0 3272 2835 226 324 0 0 chr1 28737114 28737188 -213927165 - MIR SINE MIR -106 156 83 294 294 17 8 chr1 28737775 28737894 -213926459 + (CA)n Simple_repeat Simple_repeat 2 121 0 239 147 103 44 chr1 28738122 28738258 -213926095 + (CCCGG)n Simple_repeat Simple_repeat 3 146 0 27 49 0 0 chr1 28738264 28738305 -213926048 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr1 28738370 28738391 -213925962 + GC_rich Low_complexity Low_complexity 1 21 0 201 182 0 0 chr1 28738472 28738505 -213925848 + (CA)n Simple_repeat Simple_repeat 1 33 0 29 47 0 0 chr1 28739422 28739465 -213924888 + GC_rich Low_complexity Low_complexity 1 43 0 186 71 0 0 chr1 28739502 28739530 -213924823 + (CGGAG)n Simple_repeat Simple_repeat 1 28 0 504 294 73 25 chr1 28739847 28740092 -213924261 - L3 LINE CR1 -57 1520 1264 196 226 95 48 chr1 28740121 28740205 -213924148 - MIR SINE MIR -26 236 149 429 191 59 66 chr1 28740314 28740466 -213923887 - L2 LINE L2 -4 3309 3159 250 272 81 66 chr1 28740604 28740688 -213923665 + L2 LINE L2 3176 3257 -56 234 0 0 0 chr1 28740688 28740714 -213923639 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2128 99 0 0 chr1 28740716 28740998 -213923355 - AluSq SINE Alu -31 282 1 250 272 81 66 chr1 28740998 28741046 -213923307 + L2 LINE L2 3257 3313 0 * 848 296 63 32 chr1 28741039 28741554 -213922799 - L2 LINE L2 -74 3239 2720 489 221 0 46 chr1 28742129 28742260 -213922093 - MIR SINE MIR -118 144 20 2112 76 50 30 chr1 28742372 28742674 -213921679 + AluSq SINE Alu 1 308 -5 217 303 40 0 chr1 28742807 28742883 -213921470 - L2 LINE L2 -8 3305 3227 288 265 0 24 chr1 28743601 28743684 -213920669 - MIR SINE MIR 0 262 182 732 267 47 43 chr1 28743684 28743942 -213920411 - MIR SINE MIR -1 261 3 260 333 17 26 chr1 28744038 28744155 -213920198 + MER5A DNA MER1_type 8 123 -66 * 382 248 48 19 chr1 28744064 28744169 -213920184 - MER5A DNA MER1_type -22 167 60 183 80 0 0 chr1 28744226 28744251 -213920102 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 591 244 103 1 chr1 28744519 28744698 -213919655 - MIR SINE MIR -62 146 6 799 238 72 8 chr1 28745527 28745762 -213918591 - MIR SINE MIR -2 260 11 322 297 0 30 chr1 28745853 28745954 -213918399 - MIR SINE MIR -95 113 16 198 280 11 65 chr1 28746028 28746121 -213918232 + MIR SINE MIR 54 141 -121 380 235 130 23 chr1 28746238 28746372 -213917981 + MIR SINE MIR 8 151 -67 2235 77 3 7 chr1 28746550 28746848 -213917505 + AluSx SINE Alu 1 297 -15 1583 126 134 4 chr1 28747440 28747701 -213916652 + AluSg1 SINE Alu 3 297 -12 770 163 0 24 chr1 28747801 28747958 -213916395 - FLAM_A SINE Alu 0 133 1 431 214 48 55 chr1 28747961 28748106 -213916247 - MER5B DNA MER1_type -34 144 1 2185 103 3 16 chr1 28748790 28749102 -213915251 + AluSx SINE Alu 1 308 -4 440 329 35 12 chr1 28749202 28749372 -213914981 - MIR SINE MIR -12 250 77 26 30 0 0 chr1 28749452 28749485 -213914868 + AT_rich Low_complexity Low_complexity 1 33 0 533 169 0 0 chr1 28749485 28749568 -213914785 - AluJb SINE Alu -194 118 36 249 277 201 31 chr1 28750429 28750588 -213913765 - MIR SINE MIR -57 205 20 2273 93 3 3 chr1 28750873 28751185 -213913168 - AluSq SINE Alu -1 312 1 1914 129 28 0 chr1 28751185 28751471 -213912882 - AluSx SINE Alu -13 299 6 499 333 117 35 chr1 28752030 28752771 -213911582 - L2 LINE L2 -33 3239 2443 2009 97 32 26 chr1 28752833 28753141 -213911212 - AluSx SINE Alu -2 310 1 290 349 143 0 chr1 28753222 28753348 -213911005 - L2 LINE L2 -8 3305 3162 293 257 159 18 chr1 28753537 28753650 -213910703 + MIR SINE MIR 17 145 -63 1075 169 48 87 chr1 28753743 28753909 -213910444 - MER58A DNA MER1_type -2196 224 68 1358 187 90 4 chr1 28753909 28754187 -213910166 + AluJb SINE Alu 1 302 -10 1075 169 48 87 chr1 28754187 28754251 -213910102 - MER58A DNA MER1_type -2352 68 3 499 279 96 24 chr1 28754348 28754556 -213909797 - MIR SINE MIR -6 256 34 2236 87 0 7 chr1 28754964 28755262 -213909091 + AluY SINE Alu 1 296 -15 216 375 57 0 chr1 28755505 28755593 -213908760 - MIR SINE MIR -157 105 13 588 305 75 7 chr1 28755623 28755905 -213908448 + L2 LINE L2 2483 2783 -531 650 205 79 51 chr1 28755935 28756150 -213908203 - MER112 DNA MER1_type -12 248 28 206 312 283 0 chr1 28756276 28756523 -213907830 + L2 LINE L2 2921 3237 -76 460 281 98 7 chr1 28756563 28756716 -213907637 + MIR3 SINE MIR 35 201 -7 2314 71 3 0 chr1 28756983 28757277 -213907076 + AluSq SINE Alu 1 295 -18 1604 168 23 29 chr1 28757502 28757812 -213906541 - AluJo SINE Alu 0 312 5 1878 160 7 0 chr1 28757855 28758162 -213906191 + AluSx SINE Alu 1 309 -3 251 203 253 0 chr1 28758764 28758843 -213905510 - L2 LINE L2 0 3272 3174 292 284 158 8 chr1 28758983 28759110 -213905243 + MIR SINE MIR 7 152 -110 343 280 21 0 chr1 28759189 28759282 -213905071 - MIR SINE MIR -108 154 60 469 255 159 6 chr1 28759282 28759439 -213904914 - LTR16C LTR ERVL 0 491 311 1954 93 26 0 chr1 28759445 28759715 -213904638 - AluSg SINE Alu -23 287 11 680 221 54 45 chr1 28760342 28760564 -213903789 + MER112 DNA MER1_type 22 245 -15 1068 58 0 15 chr1 28760728 28760865 -213903488 - AluSg/x SINE Alu -19 291 157 281 336 44 29 chr1 28760865 28761002 -213903351 - MIR SINE MIR -122 140 2 241 396 22 22 chr1 28761290 28761429 -213902924 - L2 LINE L2 -217 3055 2917 290 271 104 10 chr1 28762263 28762359 -213901994 - MIR SINE MIR -97 165 61 291 274 123 45 chr1 28763377 28763556 -213900797 - MIR SINE MIR -54 208 16 1706 182 3 25 chr1 28763864 28764182 -213900171 + AluJo SINE Alu 1 311 -1 862 128 23 0 chr1 28764899 28765032 -213899321 + AluJo SINE Alu 1 136 -176 1793 149 45 7 chr1 28765052 28765340 -213899013 + AluSx SINE Alu 1 299 -13 2338 70 0 0 chr1 28765433 28765731 -213898622 + AluY SINE Alu 1 298 -13 272 313 128 39 chr1 28765928 28766043 -213898310 - MIR SINE MIR -19 243 105 2144 123 0 0 chr1 28766043 28766351 -213898002 + AluSx SINE Alu 1 308 -4 272 313 128 39 chr1 28766351 28766414 -213897939 - MIR SINE MIR -157 105 49 496 266 5 58 chr1 28766498 28766675 -213897678 + MIR SINE MIR 14 182 -80 2228 154 3 3 chr1 28766675 28767012 -213897341 + MER1B DNA MER1_type 1 337 0 412 283 0 0 chr1 28767085 28767177 -213897176 + MIR SINE MIR 166 257 -5 184 260 50 50 chr1 28767654 28767754 -213896599 - MIR SINE MIR -127 135 36 199 256 0 0 chr1 28767892 28767931 -213896422 - MER5A DNA MER1_type -83 106 68 1581 190 20 16 chr1 28767932 28768237 -213896116 - AluJb SINE Alu -5 307 2 1748 147 7 10 chr1 28768262 28768555 -213895798 - AluJo SINE Alu -20 292 1 222 292 124 0 chr1 28769192 28769281 -213895072 - L2 LINE L2 -48 3224 3125 * 445 139 36 158 chr1 28769266 28769401 -213894952 + MIR SINE MIR 7 127 -81 371 208 0 0 chr1 28769418 28769490 -213894863 - MIR SINE MIR -106 156 85 1889 149 0 0 chr1 28769836 28770124 -213894229 - AluJb SINE Alu -22 290 3 219 266 80 62 chr1 28771484 28771535 -213892818 - L2 LINE L2 -93 3220 3171 959 203 13 48 chr1 28771535 28771715 -213892638 + MER20 DNA MER1_type 1 173 -46 2034 138 0 0 chr1 28771715 28772013 -213892340 + AluJb SINE Alu 1 298 -14 959 203 13 48 chr1 28772013 28772059 -213892294 + MER20 DNA MER1_type 173 219 0 219 266 80 62 chr1 28772059 28772120 -213892233 - L2 LINE L2 -142 3171 3106 402 322 160 27 chr1 28772354 28772834 -213891519 - L2 LINE L2 -6 3266 2718 2067 109 3 0 chr1 28772854 28773148 -213891205 - AluSg SINE Alu -15 295 1 1120 123 0 0 chr1 28773487 28773649 -213890704 + AluSg/x SINE Alu 130 291 -19 240 330 75 0 chr1 28773851 28773957 -213890396 - L2 LINE L2 -238 3034 2921 962 194 127 99 chr1 28773982 28774141 -213890212 + MLT1J LTR MaLR 36 189 -322 2015 104 19 19 chr1 28774141 28774448 -213889905 - AluSx SINE Alu -5 307 1 962 194 127 99 chr1 28774448 28774576 -213889777 + MLT1J LTR MaLR 189 312 -199 237 33 0 0 chr1 28774576 28774606 -213889747 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 962 194 127 99 chr1 28774606 28774623 -213889730 + MLT1J LTR MaLR 312 327 -184 1992 45 0 4 chr1 28774623 28774867 -213889486 - AluY SINE Alu -68 243 1 962 194 127 99 chr1 28774867 28775023 -213889330 + MLT1J LTR MaLR 327 511 0 1143 147 5 47 chr1 28775449 28775660 -213888693 + AluJb SINE Alu 3 204 -108 449 67 0 0 chr1 28775663 28775723 -213888630 + AluSq/x SINE Alu 76 135 -178 2042 114 10 0 chr1 28775724 28776013 -213888340 + AluSq SINE Alu 2 293 -20 2230 81 14 0 chr1 28776022 28776318 -213888035 + AluSq SINE Alu 1 300 -13 1856 124 3 49 chr1 28776457 28776763 -213887590 + AluSx SINE Alu 1 292 -20 1652 90 0 57 chr1 28776817 28776904 -213887449 + AluSg/x SINE Alu 72 162 -150 2423 66 0 3 chr1 28776904 28777208 -213887145 - AluY SINE Alu -8 303 1 1652 90 0 57 chr1 28777208 28777365 -213886988 + AluSg/x SINE Alu 162 302 -10 1952 101 24 10 chr1 28777453 28777749 -213886604 + AluSx SINE Alu 1 300 -12 421 183 81 10 chr1 28778048 28778158 -213886195 - MIR SINE MIR -65 143 39 200 229 98 0 chr1 28778304 28778365 -213885988 - L2 LINE L2 -653 2661 2595 641 251 35 48 chr1 28778367 28778594 -213885759 - L2 LINE L2 0 3313 3090 190 300 0 0 chr1 28778628 28778668 -213885685 - L2 LINE L2 -346 2968 2929 1027 164 0 40 chr1 28778979 28779180 -213885173 - AluJb SINE Alu -32 280 88 2013 105 11 0 chr1 28779248 28779533 -213884820 + AluSp SINE Alu 1 288 -25 1115 142 0 0 chr1 28779538 28779707 -213884646 + AluSg/x SINE Alu 125 293 -19 30 0 0 0 chr1 28779710 28779740 -213884613 + AT_rich Low_complexity Low_complexity 1 30 0 577 174 54 67 chr1 28779747 28779815 -213884538 + AluJo SINE Alu 5 72 -240 2269 95 0 3 chr1 28779815 28780120 -213884233 - AluSq SINE Alu -9 304 1 577 174 54 67 chr1 28780120 28780200 -213884153 + AluJo SINE Alu 72 151 -161 1877 142 3 3 chr1 28780203 28780491 -213883862 - AluSq SINE Alu -25 288 1 1678 100 4 8 chr1 28780546 28780785 -213883568 + AluSx SINE Alu 61 298 -14 2058 103 3 10 chr1 28780785 28781096 -213883257 + AluSg SINE Alu 1 310 0 692 232 148 11 chr1 28781123 28781479 -213882874 + L1MC4a LINE L1 5121 5523 -748 332 274 216 19 chr1 28781539 28781552 -213882801 + L1MC4a LINE L1 5674 5683 -2125 222 37 0 0 chr1 28781552 28781579 -213882774 + (GA)n Simple_repeat Simple_repeat 2 28 0 332 274 216 19 chr1 28781579 28781773 -213882580 + L1MC4a LINE L1 5683 5922 -1886 544 223 43 80 chr1 28781975 28782117 -213882236 - MIR SINE MIR -6 256 121 2278 65 3 0 chr1 28782117 28782411 -213881942 + AluSx SINE Alu 1 295 -17 544 223 43 80 chr1 28782411 28782456 -213881897 - MIR SINE MIR -141 121 76 502 259 83 51 chr1 28782536 28782752 -213881601 - MIR SINE MIR -12 250 28 181 79 0 53 chr1 28783100 28783138 -213881215 + (CCG)n Simple_repeat Simple_repeat 1 36 0 368 268 113 36 chr1 28784728 28784881 -213879472 + MIR SINE MIR 2 163 -45 1209 183 122 30 chr1 28785327 28785590 -213878763 + AluJo SINE Alu 4 290 -12 2207 49 26 42 chr1 28786311 28786619 -213877734 + AluY SINE Alu 1 303 -8 2212 117 0 0 chr1 28786773 28787080 -213877273 + AluSx SINE Alu 1 307 -5 2108 111 3 3 chr1 28787392 28787698 -213876655 + AluSp SINE Alu 1 306 -7 22 70 0 0 chr1 28788462 28788505 -213875848 + AT_rich Low_complexity Low_complexity 1 43 0 2342 90 0 0 chr1 28788693 28789004 -213875349 - AluY SINE Alu 0 311 1 2538 51 0 0 chr1 28789253 28789564 -213874789 - AluY SINE Alu 0 311 1 1721 112 82 4 chr1 28789569 28789838 -213874515 - AluSx SINE Alu -22 290 1 24 0 0 0 chr1 28789976 28790000 -213874353 + AT_rich Low_complexity Low_complexity 1 24 0 2205 98 7 0 chr1 28790006 28790302 -213874051 + AluSc SINE Alu 1 298 -11 859 274 67 23 chr1 28790361 28790748 -213873605 - L1ME4a LINE L1 -196 5925 5522 2194 96 0 16 chr1 28790754 28791068 -213873285 - AluSx SINE Alu 0 312 4 28 71 0 0 chr1 28791099 28791155 -213873198 + AT_rich Low_complexity Low_complexity 1 56 0 2024 96 61 3 chr1 28791228 28791521 -213872832 + AluSx SINE Alu 1 310 -2 2367 64 0 22 chr1 28791531 28791844 -213872509 + AluY SINE Alu 1 306 -5 907 259 52 26 chr1 28791956 28792338 -213872015 - L1ME4a LINE L1 -215 5906 5515 2123 116 10 0 chr1 28792383 28792685 -213871668 + AluSx SINE Alu 1 305 -7 395 279 58 17 chr1 28793427 28793559 -213870794 - MIR SINE MIR -61 147 34 481 264 172 35 chr1 28795674 28795901 -213868452 + MIR SINE MIR 5 262 0 1705 136 3 60 chr1 28796644 28796961 -213867392 + AluSx SINE Alu 1 299 -13 544 315 63 13 chr1 28796966 28797204 -213867149 + MIR SINE MIR 5 254 -8 183 235 39 39 chr1 28797162 28797213 -213867140 - MIR SINE MIR -26 236 186 * 2156 117 0 0 chr1 28797291 28797590 -213866763 + AluSg SINE Alu 1 299 -11 219 239 63 113 chr1 28798166 28798308 -213866045 + MIR3 SINE MIR 12 146 -62 1012 177 59 15 chr1 28799890 28800093 -213864260 - MER46A DNA MER2_type -23 213 2 228 254 28 14 chr1 28800426 28800497 -213863856 + (TA)n Simple_repeat Simple_repeat 2 73 0 711 179 0 0 chr1 28800824 28800941 -213863412 + FLAM_A SINE Alu 1 117 -16 423 259 114 8 chr1 28800992 28801123 -213863230 - MIR3 SINE MIR -18 190 46 439 298 120 6 chr1 28801143 28801301 -213863052 + MIR SINE MIR 12 187 -75 23 0 0 0 chr1 28801903 28801926 -213862427 + AT_rich Low_complexity Low_complexity 1 23 0 2059 86 29 0 chr1 28803081 28803386 -213860967 + AluSx SINE Alu 1 313 0 405 0 0 0 chr1 28805820 28805865 -213858488 + (GTTTG)n Simple_repeat Simple_repeat 1 45 0 1917 78 56 7 chr1 28805865 28806134 -213858219 - AluSg1 SINE Alu -27 282 1 338 164 66 0 chr1 28806137 28806198 -213858155 - AluJ/FRAM SINE Alu -11 291 227 538 189 0 0 chr1 28806198 28806293 -213858060 - AluJb SINE Alu -195 117 23 1370 117 0 15 chr1 28806343 28806540 -213857813 + AluSg/x SINE Alu 101 294 -16 2007 108 14 10 chr1 28806791 28807086 -213857267 - AluSx SINE Alu -16 296 1 222 114 159 23 chr1 28807376 28807420 -213856933 - MIR SINE MIR -139 69 20 3837 94 3 52 chr1 28807667 28808243 -213856110 + LTR14 LTR ERVK 1 548 0 676 261 36 10 chr1 28808336 28808531 -213855822 + MIR SINE MIR 31 230 -32 1925 134 7 3 chr1 28808605 28808903 -213855450 - AluSx SINE Alu -13 299 1 516 101 0 0 chr1 28808917 28809010 -213855343 - AluSc SINE Alu 0 305 213 1608 173 3 14 chr1 28809183 28809467 -213854886 + AluSx SINE Alu 1 281 -31 1722 171 3 3 chr1 28809529 28809827 -213854526 - AluJo SINE Alu -14 298 1 1844 90 26 11 chr1 28810495 28810613 -213853740 + AluSg SINE Alu 15 130 -180 1910 96 13 46 chr1 28810613 28810916 -213853437 + AluSq SINE Alu 2 294 -19 1844 90 26 11 chr1 28810916 28811064 -213853289 + AluSg SINE Alu 130 285 -25 2191 70 17 17 chr1 28811075 28811376 -213852977 + AluSp SINE Alu 1 301 -12 416 329 187 21 chr1 28811462 28811529 -213852824 - L2 LINE L2 -21 3251 3196 2008 103 0 51 chr1 28811529 28811841 -213852512 + AluSx SINE Alu 1 296 -16 416 329 187 21 chr1 28811841 28812029 -213852324 - L2 LINE L2 -76 3196 3040 2198 104 0 13 chr1 28812029 28812338 -213852015 - AluSx SINE Alu -4 308 4 416 329 187 21 chr1 28812338 28812542 -213851811 - L2 LINE L2 -232 3040 2733 485 223 135 55 chr1 28812555 28812850 -213851503 - L1MC5 LINE L1 -28 7933 7608 909 144 0 0 chr1 28812850 28812982 -213851371 - FLAM_C SINE Alu -1 132 1 485 223 135 55 chr1 28812982 28813013 -213851340 - L1MC5 LINE L1 -353 7608 7581 686 251 85 73 chr1 28813026 28813437 -213850916 - L1MC4 LINE L1 -31 8011 7596 1087 130 0 0 chr1 28813466 28813635 -213850718 - AluSg/x SINE Alu -15 295 127 413 232 66 20 chr1 28813650 28813801 -213850552 - L1MC5 LINE L1 -535 7426 7269 495 243 93 29 chr1 28813810 28813950 -213850403 - L1MC4 LINE L1 -1125 6917 6769 357 331 156 44 chr1 28813987 28814414 -213849939 - L2 LINE L2 -610 2704 2221 2190 91 3 0 chr1 28814414 28814699 -213849654 + AluSp SINE Alu 1 286 -27 357 331 156 44 chr1 28814699 28814727 -213849626 - L2 LINE L2 -1093 2221 2198 1400 184 67 3 chr1 28814935 28815218 -213849135 - AluJb SINE Alu -11 301 1 2161 92 0 22 chr1 28815263 28815579 -213848774 - AluSg SINE Alu -1 309 1 266 282 0 53 chr1 28815984 28816216 -213848137 + GA-rich Low_complexity Low_complexity 1 219 0 29 70 0 0 chr1 28817107 28817164 -213847189 + AT_rich Low_complexity Low_complexity 1 57 0 2259 96 0 3 chr1 28817314 28817607 -213846746 + AluSg SINE Alu 1 292 -18 2117 130 13 0 chr1 28817921 28818222 -213846131 - AluSq SINE Alu -8 305 1 2299 84 7 3 chr1 28819371 28819670 -213844683 - AluSc SINE Alu -8 301 2 1112 92 0 0 chr1 28819670 28819812 -213844541 - AluSg SINE Alu -167 143 2 2440 68 0 0 chr1 28819836 28820130 -213844223 + AluY SINE Alu 2 295 -16 292 205 80 71 chr1 28820498 28820610 -213843743 - L2 LINE L2 -17 3296 3184 2287 78 0 13 chr1 28820901 28821207 -213843146 + AluY SINE Alu 1 302 -9 2255 108 7 0 chr1 28821214 28821509 -213842844 + AluSq SINE Alu 1 297 -16 2169 100 14 0 chr1 28821511 28821802 -213842551 + AluSp SINE Alu 1 295 -18 342 147 302 0 chr1 28822331 28822447 -213841906 + L1MCa LINE L1 2329 2479 -3947 203 0 37 0 chr1 28822448 28822475 -213841878 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1929 112 3 14 chr1 28822478 28822764 -213841589 - AluSx SINE Alu -29 283 1 509 134 0 0 chr1 28822795 28822862 -213841491 + AluS SINE Alu 6 72 -237 1455 116 40 33 chr1 28822975 28823278 -213841075 + Ricksha DNA DNA 2420 2809 -445 195 23 68 45 chr1 28823278 28823322 -213841031 + T-rich Low_complexity Low_complexity 3 47 0 3119 26 3 0 chr1 28823329 28823675 -213840678 - L1PA4 LINE L1 -3 6152 5806 486 117 65 13 chr1 28824076 28824153 -213840200 + Ricksha DNA DNA 2395 2475 -379 * 1890 126 23 7 chr1 28824151 28824461 -213839892 + Ricksha DNA DNA 2924 3238 -8 449 211 78 0 chr1 28824845 28824935 -213839418 + MER5A DNA MER1_type 9 105 -84 587 270 114 23 chr1 28824945 28825208 -213839145 - LTR28 LTR ERV1 0 1020 734 1530 84 0 110 chr1 28825709 28825781 -213838572 - L1MA8 LINE L1 -3 6288 6210 2378 93 0 16 chr1 28825781 28826094 -213838259 + AluSg SINE Alu 2 309 -1 1530 84 0 110 chr1 28826094 28826294 -213838059 - L1MA8 LINE L1 -81 6210 6046 306 241 112 9 chr1 28826497 28826613 -213837740 - MIR SINE MIR -85 177 50 364 253 95 0 chr1 28826756 28826851 -213837502 + L2 LINE L2 3208 3311 -2 216 271 187 0 chr1 28827091 28827198 -213837155 - MIR SINE MIR -70 192 66 21 36 0 0 chr1 28828412 28828440 -213835913 + AT_rich Low_complexity Low_complexity 1 28 0 1993 136 7 13 chr1 28828932 28829241 -213835112 - AluJb SINE Alu -4 308 2 206 308 0 77 chr1 28829266 28829357 -213834996 - MIR SINE MIR -82 126 43 1006 182 62 6 chr1 28829392 28829568 -213834785 - MER5A DNA MER1_type -2 187 2 425 333 49 19 chr1 28829577 28829739 -213834614 - MER5A DNA MER1_type 0 189 23 2355 36 47 0 chr1 28829947 28830226 -213834127 + AluY SINE Alu 1 292 -19 706 122 10 0 chr1 28830531 28830629 -213833724 + AluSg SINE Alu 3 101 -209 343 170 0 0 chr1 28830729 28830776 -213833577 + C-rich Low_complexity Low_complexity 1 47 0 193 336 87 39 chr1 28831356 28831460 -213832893 - MIR3 SINE MIR -51 157 49 2178 100 0 37 chr1 28831814 28832135 -213832218 + AluSx SINE Alu 1 309 -3 2179 103 3 52 chr1 28832696 28833025 -213831328 - AluSp SINE Alu 0 313 1 225 158 53 0 chr1 28833229 28833267 -213831086 - Tigger3(Golem) DNA MER2_type 0 3036 2997 1099 154 6 0 chr1 28833267 28833436 -213830917 - AluJo SINE Alu -142 170 1 890 205 7 0 chr1 28833571 28833722 -213830631 + FRAM SINE Alu 1 152 -14 24 53 0 0 chr1 28833722 28833760 -213830593 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 28833906 28833930 -213830423 + AT_rich Low_complexity Low_complexity 1 24 0 2305 112 0 0 chr1 28833952 28834265 -213830088 - AluSq SINE Alu 0 313 1 471 149 0 0 chr1 28834402 28834469 -213829884 + FLAM_A SINE Alu 43 109 -33 2105 127 0 0 chr1 28834551 28834843 -213829510 + AluSx SINE Alu 1 292 -20 2160 96 11 0 chr1 28834948 28835230 -213829123 - AluSq SINE Alu -28 285 1 943 112 0 8 chr1 28836430 28836564 -213827789 - FLAM_C SINE Alu 0 133 1 1802 5 0 0 chr1 28837029 28837225 -213827128 + L1HS LINE L1 5803 5998 -157 300 130 0 0 chr1 28837325 28837379 -213826974 + Alu SINE Alu 247 300 0 1096 140 0 0 chr1 28837412 28837569 -213826784 - FRAM SINE Alu -8 158 2 1908 163 0 0 chr1 28839142 28839437 -213824916 - AluJb SINE Alu -14 298 4 208 356 0 0 chr1 28839439 28839529 -213824824 - MIR3 SINE MIR -8 200 111 201 309 209 0 chr1 28839586 28839696 -213824657 + MIR SINE MIR 33 165 -97 2248 86 3 7 chr1 28840076 28840366 -213823987 + AluSp SINE Alu 1 289 -24 122 83 0 7 chr1 28840510 28840812 -213823541 + AT_rich Low_complexity Low_complexity 1 300 0 33 114 0 0 chr1 28840847 28840935 -213823418 + AT_rich Low_complexity Low_complexity 1 88 0 1337 206 51 20 chr1 28841003 28841295 -213823058 - AluJo SINE Alu 0 302 2 1674 182 45 27 chr1 28841495 28841540 -213822813 + MER58B DNA MER1_type 1 44 -2376 2055 135 28 0 chr1 28841540 28841828 -213822525 - AluSx SINE Alu -16 296 1 1674 182 45 27 chr1 28841828 28842117 -213822236 + MER58B DNA MER1_type 44 341 0 866 144 0 0 chr1 28842358 28842483 -213821870 - FLAM_A SINE Alu -8 125 1 886 176 7 0 chr1 28842858 28843011 -213821342 - AluJb SINE Alu -22 290 137 582 263 157 53 chr1 28843635 28843935 -213820418 + L3 LINE CR1 1237 1567 -10 22 0 0 0 chr1 28843994 28844016 -213820337 + AT_rich Low_complexity Low_complexity 1 22 0 2264 112 3 0 chr1 28844280 28844576 -213819777 - AluSx SINE Alu -15 297 1 2561 57 3 0 chr1 28844597 28844894 -213819459 - AluY SINE Alu -11 300 3 21 0 0 0 chr1 28845858 28845879 -213818474 + AT_rich Low_complexity Low_complexity 1 21 0 204 298 91 50 chr1 28846366 28846487 -213817866 - MIR SINE MIR -88 174 49 2424 92 0 0 chr1 28846640 28846944 -213817409 - AluSx SINE Alu -8 304 1 24 53 0 0 chr1 28847554 28847592 -213816761 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr1 28849141 28849163 -213815190 + AT_rich Low_complexity Low_complexity 1 22 0 2142 114 0 7 chr1 28849393 28849690 -213814663 + AluSx SINE Alu 3 297 -15 431 250 171 0 chr1 28849725 28849877 -213814476 + L1ME3A LINE L1 5988 6165 -5 262 286 0 0 chr1 28850096 28850152 -213814201 - L2 LINE L2 0 3272 3217 2273 87 6 34 chr1 28850167 28850488 -213813865 + AluSq SINE Alu 1 312 -1 1693 113 0 17 chr1 28850488 28850726 -213813627 + AluSg/x SINE Alu 73 308 -4 757 224 132 26 chr1 28850828 28851056 -213813297 - MIR SINE MIR -3 259 8 1724 75 0 0 chr1 28852461 28852673 -213811680 + AluSc SINE Alu 82 293 -16 22 35 0 0 chr1 28852902 28852931 -213811422 + AT_rich Low_complexity Low_complexity 1 29 0 2224 122 3 3 chr1 28853364 28853676 -213810677 - AluSx SINE Alu 0 312 1 2455 69 0 0 chr1 28853884 28854190 -213810163 - AluY SINE Alu -5 306 1 1860 166 0 3 chr1 28854353 28854679 -213809674 - AluJb SINE Alu 0 325 1 2917 3 0 0 chr1 28854686 28854995 -213809358 - AluYa5 SINE Alu -2 309 1 489 124 8 14 chr1 28855455 28855705 -213808648 + AluSx SINE Alu 1 295 -17 417 340 49 14 chr1 28855744 28855888 -213808465 + L2 LINE L2 3119 3267 -5 1849 123 43 0 chr1 28855915 28856191 -213808162 + AluSx SINE Alu 6 293 -19 2242 99 3 16 chr1 28856312 28856615 -213807738 + AluY SINE Alu 1 299 -12 2425 82 0 3 chr1 28856733 28857038 -213807315 + AluSq SINE Alu 3 306 -7 363 368 37 37 chr1 28858061 28858224 -213806129 - L2 LINE L2 -6 3266 3104 307 197 82 34 chr1 28858362 28858485 -213805868 + MIR SINE MIR 31 154 -62 2103 138 0 3 chr1 28859043 28859339 -213805014 + AluSx SINE Alu 1 295 -17 280 304 36 18 chr1 28859353 28859465 -213804888 - MIR3 SINE MIR -28 180 67 784 170 67 0 chr1 28859588 28859723 -213804630 + AluJb SINE Alu 158 301 -11 2165 125 0 10 chr1 28859780 28860093 -213804260 - AluSx SINE Alu -2 310 1 1983 125 7 0 chr1 28860367 28860702 -213803651 + AluSx SINE Alu 1 337 0 2001 133 3 3 chr1 28860711 28861012 -213803341 + AluSx SINE Alu 1 301 -11 952 278 8 28 chr1 28861245 28861497 -213802856 + MIR SINE MIR 16 262 0 272 307 136 0 chr1 28861744 28861832 -213802521 - L2 LINE L2 -38 3275 3176 1963 138 7 0 chr1 28861973 28862280 -213802073 - AluSx SINE Alu 0 319 11 200 361 19 28 chr1 28862390 28862498 -213801855 - MIR SINE MIR -82 126 20 1319 272 105 37 chr1 28862533 28862915 -213801438 - L2 LINE L2 -35 3278 2820 719 216 155 0 chr1 28862915 28863096 -213801257 + MER3 DNA MER1_type 1 209 0 1319 272 105 37 chr1 28863096 28863366 -213800987 - L2 LINE L2 -493 2820 2570 1464 147 20 49 chr1 28863481 28863726 -213800627 - AluJb SINE Alu -69 243 6 1718 150 0 18 chr1 28863801 28864081 -213800272 - AluJb SINE Alu -10 302 28 10912 144 34 12 chr1 28864098 28865879 -213798474 - Ricksha DNA DNA 0 84 9 1916 121 7 0 chr1 28866130 28866402 -213797951 + AluSx SINE Alu 33 306 -6 435 260 0 10 chr1 28866414 28866514 -213797839 - MIR SINE MIR -71 137 39 * 520 268 118 0 chr1 28866509 28866711 -213797642 + MIR SINE MIR 29 256 -6 2382 97 6 6 chr1 28866765 28867076 -213797277 + AluSq SINE Alu 1 311 -2 789 126 54 0 chr1 28867076 28867187 -213797166 + AluSq SINE Alu 134 250 -63 186 133 0 0 chr1 28867187 28867217 -213797136 + (A)n Simple_repeat Simple_repeat 1 30 0 1351 210 32 4 chr1 28867250 28867502 -213796851 - AluJb SINE Alu -19 293 35 960 224 90 40 chr1 28867672 28867994 -213796359 - L2 LINE L2 -1 3312 2975 2118 98 28 3 chr1 28868106 28868413 -213795940 + AluSp SINE Alu 2 313 0 479 180 0 10 chr1 28868461 28868561 -213795792 + AluJo SINE Alu 36 134 -178 332 173 71 0 chr1 28868564 28868691 -213795662 + (TA)n Simple_repeat Simple_repeat 2 137 0 928 198 18 0 chr1 28868691 28868858 -213795495 + AluJo SINE Alu 124 293 -19 2332 112 3 0 chr1 28868861 28869173 -213795180 + AluSq SINE Alu 1 313 0 420 331 18 25 chr1 28869176 28869339 -213795014 + MIR SINE MIR 50 211 -51 1184 111 0 0 chr1 28869435 28869618 -213794735 + AluSg/x SINE Alu 130 312 0 1075 139 12 0 chr1 28869669 28869834 -213794519 + FRAM SINE Alu 1 162 -14 400 240 130 7 chr1 28870095 28870241 -213794112 + L1ME4a LINE L1 5731 5894 -227 185 0 40 0 chr1 28870499 28870524 -213793829 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1917 118 7 61 chr1 28870526 28870687 -213793666 - AluSx SINE Alu -30 282 143 2445 92 0 0 chr1 28870687 28870991 -213793362 - AluSq SINE Alu -9 304 1 1917 118 7 61 chr1 28870991 28871126 -213793227 - AluSx SINE Alu -169 143 2 405 239 60 26 chr1 28871302 28871419 -213792934 + MIR SINE MIR 21 141 -121 2221 126 3 0 chr1 28871575 28871885 -213792468 - AluSx SINE Alu -1 311 1 816 237 76 24 chr1 28871912 28872161 -213792192 + MIR SINE MIR 1 262 0 1985 193 64 41 chr1 28872320 28872352 -213792001 - L1ME2 LINE L1 -10 6154 6124 1759 164 4 7 chr1 28872352 28872498 -213791855 - AluJo SINE Alu -31 281 135 2247 110 0 19 chr1 28872498 28872806 -213791547 - AluSg SINE Alu -8 302 1 1759 164 4 7 chr1 28872806 28872940 -213791413 - AluJo SINE Alu -177 135 2 1985 193 64 41 chr1 28872940 28873154 -213791199 - L1ME2 LINE L1 -40 6124 5916 2157 124 0 10 chr1 28873154 28873452 -213790901 - AluSq SINE Alu -14 299 5 1985 193 64 41 chr1 28873452 28873662 -213790691 - L1ME2 LINE L1 -248 5916 5681 2121 124 7 10 chr1 28873662 28873969 -213790384 - AluSx SINE Alu -6 306 1 1985 193 64 41 chr1 28873969 28874045 -213790308 - L1ME2 LINE L1 -483 5681 5608 572 98 0 24 chr1 28874359 28874476 -213789877 - AluSp/q SINE Alu 0 318 204 2307 120 3 0 chr1 28874488 28874797 -213789556 - AluSg SINE Alu 0 310 1 2418 102 0 3 chr1 28875122 28875435 -213788918 - AluSx SINE Alu 0 312 1 602 238 0 0 chr1 28875917 28876043 -213788310 + FLAM_A SINE Alu 1 126 -7 344 254 77 15 chr1 28876163 28876293 -213788060 + MIR SINE MIR 119 256 -6 315 294 213 51 chr1 28876456 28876851 -213787502 - L2 LINE L2 -3 3269 2811 195 129 0 0 chr1 28876985 28877016 -213787337 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 1909 142 8 0 chr1 28877070 28877337 -213787016 + AluSx SINE Alu 1 269 -43 2325 101 3 0 chr1 28877557 28877853 -213786500 + AluSp SINE Alu 1 297 -16 211 184 0 0 chr1 28878078 28878116 -213786237 + L2 LINE L2 3268 3305 -8 292 138 52 0 chr1 28878363 28878421 -213785932 + Alu SINE Alu 240 300 -1 2480 85 0 0 chr1 28878422 28878728 -213785625 + AluY SINE Alu 1 306 -5 343 289 53 27 chr1 28878730 28878841 -213785512 + L1ME3A LINE L1 2325 2444 -3702 2223 132 0 0 chr1 28878841 28879145 -213785208 + AluSx SINE Alu 2 305 -7 343 289 53 27 chr1 28879145 28879220 -213785133 + L1ME3A LINE L1 2444 2516 -3630 2032 103 10 48 chr1 28879289 28879465 -213784888 - AluSx SINE Alu -11 301 141 2595 61 3 6 chr1 28879465 28879777 -213784576 - AluY SINE Alu 0 311 1 2032 103 10 48 chr1 28879777 28879912 -213784441 - AluSx SINE Alu -171 141 2 2269 113 0 0 chr1 28879954 28880245 -213784108 + AluSg SINE Alu 2 292 -18 776 237 16 5 chr1 28880253 28880439 -213783914 + L1ME3A LINE L1 4060 4247 -1899 1935 178 0 0 chr1 28880439 28880743 -213783610 + AluJb SINE Alu 1 304 -8 555 238 156 63 chr1 28880775 28880918 -213783435 + L1ME3A LINE L1 5621 5749 -421 2353 98 0 3 chr1 28880918 28881214 -213783139 + AluSp SINE Alu 1 295 -18 2461 72 7 7 chr1 28881214 28881518 -213782835 + AluY SINE Alu 1 304 -7 555 238 156 63 chr1 28881518 28881675 -213782678 + L1ME3A LINE L1 5748 5950 -220 747 138 0 0 chr1 28881705 28881821 -213782532 + AluJo/FLAM SINE Alu 1 116 -186 1932 151 23 0 chr1 28881824 28882173 -213782180 - AluSx SINE Alu 0 356 1 328 281 8 66 chr1 28882188 28882309 -213782044 + L1ME3A LINE L1 5944 6057 -113 1786 95 4 4 chr1 28882363 28882604 -213781749 + AluSx SINE Alu 50 290 -22 2615 30 40 0 chr1 28882641 28882937 -213781416 - AluY SINE Alu -3 308 1 356 249 0 12 chr1 28882978 28883075 -213781278 + FLAM_A SINE Alu 4 72 -61 * 403 104 17 0 chr1 28883070 28883144 -213781209 - Alu SINE Alu -243 57 1 343 223 62 36 chr1 28883378 28883490 -213780863 + L1ME LINE L1 5630 5744 -377 2288 91 0 33 chr1 28883668 28883975 -213780378 - AluSq SINE Alu -16 297 1 451 177 21 21 chr1 28884435 28884531 -213779822 + MIR SINE MIR 70 165 -97 231 284 74 21 chr1 28884537 28884632 -213779721 + MIR3 SINE MIR 13 112 -96 201 74 0 0 chr1 28886365 28886392 -213777961 + (TCCC)n Simple_repeat Simple_repeat 2 28 0 640 161 50 0 chr1 28886429 28886493 -213777860 + CT-rich Low_complexity Low_complexity 3 62 -109 2614 58 3 3 chr1 28886493 28886803 -213777550 - AluSg SINE Alu 0 310 1 640 161 50 0 chr1 28886803 28886899 -213777454 + CT-rich Low_complexity Low_complexity 62 171 0 2243 106 10 13 chr1 28886901 28887240 -213777113 - AluSx SINE Alu 0 339 2 216 0 0 0 chr1 28887240 28887264 -213777089 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 729 176 0 22 chr1 28887282 28887418 -213776935 - FLAM_C SINE Alu 0 133 1 1759 161 49 3 chr1 28887963 28888249 -213776104 + AluJb SINE Alu 1 299 -13 4359 111 66 75 chr1 28888409 28889805 -213774548 + pTR5 LTR ERV1 742 2438 0 384 93 0 0 chr1 28890180 28890234 -213774119 + Alu SINE Alu 3 56 -246 832 165 0 0 chr1 28890237 28890370 -213773983 + AluSp/q SINE Alu 163 295 -18 2227 117 7 0 chr1 28890378 28890677 -213773676 + AluSx SINE Alu 1 301 -11 2102 110 10 35 chr1 28890682 28890992 -213773361 + AluSx SINE Alu 3 304 -8 219 295 36 0 chr1 28891001 28891094 -213773259 + MIR SINE MIR 47 144 -108 307 306 63 0 chr1 28891465 28891576 -213772777 + MIR SINE MIR 28 145 -117 188 271 177 10 chr1 28892337 28892433 -213771920 + MIR SINE MIR 77 188 -74 832 69 0 0 chr1 28892610 28892711 -213771642 - AluSg/x SINE Alu -14 296 196 2180 115 7 10 chr1 28892826 28892996 -213771357 - AluSx SINE Alu -8 304 134 2574 66 0 3 chr1 28892996 28893298 -213771055 - AluY SINE Alu -10 301 1 2180 115 7 10 chr1 28893298 28893432 -213770921 - AluSx SINE Alu -178 134 1 1878 134 40 4 chr1 28893444 28893720 -213770633 - AluJo SINE Alu -26 286 1 387 207 37 0 chr1 28893732 28893814 -213770539 - MIR SINE MIR -71 191 107 343 214 62 0 chr1 28893919 28894031 -213770322 - L2 LINE L2 -30 3242 3124 21 71 0 0 chr1 28895111 28895153 -213769200 + GC_rich Low_complexity Low_complexity 1 42 0 26 98 0 0 chr1 28896040 28896122 -213768231 + GC_rich Low_complexity Low_complexity 1 82 0 30 45 0 0 chr1 28898280 28898324 -213766029 + GC_rich Low_complexity Low_complexity 1 44 0 2400 71 14 3 chr1 28901635 28901929 -213762424 + AluSq SINE Alu 1 297 -16 2294 102 10 16 chr1 28903586 28903890 -213760463 + AluSx SINE Alu 1 302 -10 2373 119 0 0 chr1 28904618 28904930 -213759423 - AluSx SINE Alu 0 312 1 236 330 89 9 chr1 28905267 28905379 -213758974 - MIR SINE MIR -83 179 59 2203 114 20 0 chr1 28905380 28905679 -213758674 - AluSq SINE Alu -8 305 1 425 331 0 20 chr1 28906306 28906457 -213757896 - MIR SINE MIR -107 155 8 363 286 95 0 chr1 28906900 28907047 -213757306 - MIR3 SINE MIR -4 204 44 397 262 205 9 chr1 28907186 28907396 -213756957 - MIR SINE MIR 0 262 12 843 176 0 34 chr1 28907739 28907887 -213756466 + FLAM_C SINE Alu 1 143 0 2439 97 0 0 chr1 28908044 28908343 -213756010 - AluSg SINE Alu -11 299 1 2294 78 11 0 chr1 28908361 28908665 -213755688 - AluY SINE Alu 0 307 1 2360 101 0 0 chr1 28908849 28909145 -213755208 - AluSx SINE Alu -6 306 11 1815 148 0 65 chr1 28909664 28909988 -213754365 - AluJb SINE Alu -9 303 1 2060 138 3 0 chr1 28910000 28910289 -213754064 - AluSx SINE Alu -22 290 1 2412 85 3 0 chr1 28910829 28911124 -213753229 - AluSp SINE Alu -17 296 1 2035 117 4 4 chr1 28911183 28911496 -213752857 + AluSx SINE Alu 1 313 0 2310 105 3 0 chr1 28911592 28911898 -213752455 + AluSp SINE Alu 1 307 -6 1350 101 0 0 chr1 28911991 28912160 -213752193 - AluSg/x SINE Alu -10 302 134 2382 97 6 6 chr1 28912160 28912471 -213751882 - AluSq SINE Alu -2 311 1 499 268 118 0 chr1 28912525 28912727 -213751626 - MIR SINE MIR -6 256 29 412 260 0 10 chr1 28912722 28912822 -213751531 + MIR SINE MIR 39 137 -71 * 2230 112 10 10 chr1 28912826 28913138 -213751215 - AluSp SINE Alu -1 312 1 2349 85 7 26 chr1 28913236 28913379 -213750974 + AluSx SINE Alu 1 145 -167 2699 46 3 0 chr1 28913379 28913684 -213750669 + AluY SINE Alu 1 306 -5 2349 85 7 26 chr1 28913684 28913847 -213750506 + AluSx SINE Alu 145 301 -11 297 224 0 0 chr1 28914293 28914351 -213750002 + MIR3 SINE MIR 151 208 0 473 86 0 75 chr1 28915341 28915434 -213748919 + AluSg/x SINE Alu 219 304 -5 486 283 133 6 chr1 28915437 28915603 -213748750 - MIR SINE MIR -74 188 2 2518 55 0 3 chr1 28915672 28915963 -213748390 + AluY SINE Alu 1 290 -21 463 159 0 15 chr1 28915978 28916064 -213748289 - FRAM/FAM SINE Alu -101 75 1 1809 155 0 4 chr1 28918383 28918661 -213745692 - AluJo SINE Alu -14 298 22 2035 147 30 0 chr1 28919024 28919357 -213744996 - MER2 DNA MER2_type -1 343 1 228 177 51 38 chr1 28919499 28919578 -213744775 + L1PA13 LINE L1 4391 4470 -1676 * 235 61 0 0 chr1 28919558 28919591 -213744762 + L1PA13 LINE L1 4743 4775 -1371 2107 143 3 10 chr1 28919591 28919905 -213744448 + AluSx SINE Alu 1 312 0 6051 104 19 2 chr1 28919930 28920261 -213744092 + L1PA13 LINE L1 4766 5090 -1073 2165 109 0 0 chr1 28920261 28920545 -213743808 - AluSg SINE Alu -26 284 1 6051 104 19 2 chr1 28920545 28921618 -213742735 + L1PA13 LINE L1 5090 6163 0 2418 76 20 0 chr1 28921778 28922079 -213742274 + AluSp SINE Alu 1 307 -6 219 184 0 0 chr1 28923142 28923180 -213741173 - L2 LINE L2 -8 3305 3268 2274 101 3 0 chr1 28923405 28923701 -213740652 - AluSp SINE Alu -16 297 1 1887 142 8 0 chr1 28923921 28924188 -213740165 - AluSx SINE Alu -43 269 1 195 129 0 0 chr1 28924242 28924273 -213740080 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 426 291 215 53 chr1 28924407 28924802 -213739551 + L2 LINE L2 2811 3269 -3 385 254 77 15 chr1 28924965 28925095 -213739258 - MIR SINE MIR -6 256 119 626 238 0 0 chr1 28925215 28925341 -213739012 - FLAM_A SINE Alu -7 126 1 2379 99 0 3 chr1 28925823 28926136 -213738217 + AluSx SINE Alu 1 312 0 2281 86 7 0 chr1 28926509 28926799 -213737554 + AluSp SINE Alu 1 292 -21 2469 69 10 0 chr1 28926929 28927232 -213737121 + AluY SINE Alu 1 306 -5 306 289 139 64 chr1 28927545 28927598 -213736755 + L1ME4a LINE L1 5930 5978 -143 2486 84 0 0 chr1 28927598 28927906 -213736447 + AluSc SINE Alu 1 308 -1 306 289 139 64 chr1 28927906 28928025 -213736328 + L1ME4a LINE L1 5978 6115 -6 1425 164 0 4 chr1 28928318 28928543 -213735810 + AluJb SINE Alu 1 224 -88 2284 105 3 7 chr1 28928725 28929031 -213735322 + AluSx SINE Alu 1 305 -7 2251 108 3 0 chr1 28931747 28932054 -213732299 + AluSx SINE Alu 1 308 -4 226 54 0 0 chr1 28932318 28932355 -213731998 - Alu SINE Alu -3 298 262 2342 92 0 0 chr1 28933013 28933308 -213731045 - AluSg SINE Alu -15 295 1 606 210 57 13 chr1 28933397 28933554 -213730799 - MIR SINE MIR -2 260 97 712 168 0 0 chr1 28934434 28934541 -213729812 + FLAM_A SINE Alu 3 109 -33 2226 116 0 0 chr1 28934623 28934926 -213729427 + AluSx SINE Alu 1 303 -9 778 218 20 5 chr1 28934928 28935125 -213729228 - MER46C DNA MER2_type -47 291 92 339 274 66 19 chr1 28935442 28935548 -213728805 - MIR SINE MIR -95 167 57 1663 163 9 77 chr1 28936198 28936523 -213727830 + AluJo SINE Alu 1 303 -9 32 67 0 0 chr1 28937031 28937091 -213727262 + AT_rich Low_complexity Low_complexity 1 60 0 393 364 156 3 chr1 28937351 28937711 -213726642 - L2 LINE L2 -36 3236 2822 739 211 29 5 chr1 28938085 28938289 -213726064 + L1MA7 LINE L1 6079 6287 -4 2276 87 7 0 chr1 28938431 28938730 -213725623 + AluY SINE Alu 1 301 -10 1797 175 3 20 chr1 28939132 28939429 -213724924 - AluJb SINE Alu -20 292 1 2152 128 0 3 chr1 28939443 28939740 -213724613 - AluSq SINE Alu -17 296 1 33 0 0 0 chr1 28940171 28940204 -213724149 + AT_rich Low_complexity Low_complexity 1 33 0 2011 124 28 0 chr1 28940396 28940679 -213723674 + AluSx SINE Alu 1 291 -21 1395 193 80 57 chr1 28940740 28941216 -213723137 - HAL1 LINE L1 -667 1840 1354 230 220 0 68 chr1 28941261 28941320 -213723033 + L2 LINE L2 3216 3270 -2 364 273 312 7 chr1 28941343 28941497 -213722856 + MIR SINE MIR 61 261 -1 734 196 95 20 chr1 28941521 28941669 -213722684 + AluJb SINE Alu 1 159 -153 1805 122 0 4 chr1 28941775 28942029 -213722324 + AluSq SINE Alu 50 302 -11 2512 73 0 0 chr1 28942260 28942562 -213721791 - AluSg SINE Alu -8 302 1 1966 145 36 7 chr1 28942704 28943007 -213721346 - AluJb SINE Alu 0 312 1 23 0 0 0 chr1 28944601 28944624 -213719729 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 28945081 28945113 -213719240 + AT_rich Low_complexity Low_complexity 1 32 0 184 361 0 14 chr1 28946614 28946686 -213717667 + MIR SINE MIR 184 254 -8 1834 185 3 10 chr1 28946820 28947134 -213717219 + AluJb SINE Alu 1 312 0 2221 78 3 3 chr1 28947139 28947445 -213716908 + AluY SINE Alu 1 306 0 309 295 137 22 chr1 28947551 28947690 -213716663 + MIR SINE MIR 34 188 -74 21 0 0 0 chr1 28948371 28948392 -213715961 + AT_rich Low_complexity Low_complexity 1 21 0 207 219 16 0 chr1 28948835 28948882 -213715471 - MIR SINE MIR -50 158 107 1860 164 0 7 chr1 28948922 28949214 -213715139 - AluJo SINE Alu -22 290 1 2036 109 0 0 chr1 28949448 28949715 -213714638 - AluSx SINE Alu -45 267 1 24 32 0 0 chr1 28950389 28950420 -213713933 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr1 28951025 28951056 -213713297 + AT_rich Low_complexity Low_complexity 1 31 0 2377 81 7 0 chr1 28951305 28951602 -213712751 - AluY SINE Alu 0 311 13 785 161 0 115 chr1 28951609 28951783 -213712570 - AluJb SINE Alu -22 290 137 929 150 43 5 chr1 28951795 28951982 -213712371 - L1MC4 LINE L1 -961 7081 6888 779 197 71 26 chr1 28951985 28952225 -213712128 - L1MC4 LINE L1 -1316 6679 6441 295 205 134 27 chr1 28952686 28952798 -213711555 - L1ME4a LINE L1 -3 6118 5995 2236 67 3 7 chr1 28953749 28954074 -213710279 - AluSg1 SINE Alu 0 324 1 2277 103 0 3 chr1 28954079 28954371 -213709982 - AluSc SINE Alu -18 291 1 672 313 85 0 chr1 28954398 28954622 -213709731 - MIR SINE MIR -18 244 2 598 168 0 112 chr1 28954630 28954714 -213709639 - Charlie1a DNA MER1_type -1306 1455 1404 2312 104 3 3 chr1 28954714 28955021 -213709332 - AluSp SINE Alu -6 307 1 598 168 0 112 chr1 28955021 28955132 -213709221 - Charlie1a DNA MER1_type -1357 1404 1282 2323 47 7 0 chr1 28955474 28955807 -213708546 - AluY SINE Alu 0 335 1 1948 98 77 18 chr1 28955808 28956094 -213708259 - AluSg SINE Alu -4 306 4 2875 6 0 0 chr1 28956106 28956444 -213707909 - AluYa5 SINE Alu 0 338 1 1496 126 0 0 chr1 28957050 28957257 -213707096 - AluSg/x SINE Alu -7 303 97 1755 164 3 11 chr1 28957257 28957543 -213706810 - AluJb SINE Alu -27 285 1 225 0 0 0 chr1 28957549 28957574 -213706779 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr1 28957696 28957718 -213706635 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 28958102 28958123 -213706230 + AT_rich Low_complexity Low_complexity 1 21 0 2555 59 0 0 chr1 28958252 28958558 -213705795 + AluY SINE Alu 1 306 -5 545 218 23 45 chr1 28959742 28959875 -213704478 + MER20 DNA MER1_type 1 130 -89 325 120 0 0 chr1 28960198 28960248 -213704105 - Alu SINE Alu -6 294 245 2375 88 7 0 chr1 28960623 28960929 -213703424 + AluSx SINE Alu 1 308 -4 2329 82 3 3 chr1 28961043 28961335 -213703018 + AluY SINE Alu 1 292 -19 224 342 44 9 chr1 28961846 28961960 -213702393 + MIR SINE MIR 37 154 -108 564 113 0 10 chr1 28961991 28962088 -213702265 - L1MB8 LINE L1 0 6178 6083 303 282 65 24 chr1 28962490 28962614 -213701739 + MER5B DNA MER1_type 50 178 0 187 260 67 58 chr1 28962664 28962768 -213701585 + MIR SINE MIR 112 216 -46 297 163 0 0 chr1 28963227 28963276 -213701077 + MIR SINE MIR 212 260 -2 289 266 120 63 chr1 28963312 28963470 -213700883 + MIR3 SINE MIR 10 126 -82 2466 60 13 0 chr1 28963507 28963805 -213700548 + AluSp SINE Alu 1 302 -11 250 138 0 17 chr1 28963834 28963892 -213700461 + L1M4 LINE L1 3172 3228 -2918 228 98 0 0 chr1 28963889 28963930 -213700423 + L1MA7 LINE L1 6237 6277 -14 * 2060 105 18 14 chr1 28963930 28964216 -213700137 + AluSq SINE Alu 1 287 -26 282 29 0 0 chr1 28964216 28964251 -213700102 + (CATA)n Simple_repeat Simple_repeat 2 36 0 319 271 57 0 chr1 28964276 28964398 -213699955 + L1M4 LINE L1 3211 3339 -2807 1418 204 0 15 chr1 28964464 28964724 -213699629 + AluJo SINE Alu 1 256 -56 1353 145 0 0 chr1 28964848 28965041 -213699312 + AluSq SINE Alu 105 297 -16 4265 165 72 46 chr1 28965041 28965301 -213699052 - Charlie1a DNA MER1_type -1468 1293 1041 2382 84 0 3 chr1 28965301 28965598 -213698755 - AluSg SINE Alu -14 296 1 4265 165 72 46 chr1 28965598 28965649 -213698704 - Charlie1a DNA MER1_type -1720 1041 993 24 0 0 0 chr1 28965649 28965673 -213698680 + AT_rich Low_complexity Low_complexity 1 24 0 4265 165 72 46 chr1 28965673 28966159 -213698194 - Charlie1a DNA MER1_type -1768 993 521 2422 80 0 0 chr1 28966159 28966461 -213697892 + AluY SINE Alu 3 304 -7 4265 165 72 46 chr1 28966461 28966876 -213697477 - Charlie1a DNA MER1_type -2240 521 1 335 278 0 37 chr1 28966877 28966985 -213697368 + MIR SINE MIR 158 261 -1 189 247 200 12 chr1 28966983 28967068 -213697285 + L3 LINE CR1 1471 1571 -6 * 1348 199 68 25 chr1 28967096 28967377 -213696976 + AluJo SINE Alu 1 293 -19 31 26 0 0 chr1 28967489 28967527 -213696826 + AT_rich Low_complexity Low_complexity 1 38 0 2119 99 0 3 chr1 28967694 28967976 -213696377 + AluSg1 SINE Alu 23 303 -6 4494 120 12 6 chr1 29018122 29018812 -213645541 + L1P LINE L1 4075 4768 -1378 300 283 30 37 chr1 29018855 29019009 -213645344 - MIR SINE MIR -65 143 26 1589 98 47 4 chr1 29019914 29020169 -213644184 + L1MA2 LINE L1 6039 6304 0 207 211 0 0 chr1 29022762 29022800 -213641553 - L2 LINE L2 -20 3293 3256 181 283 94 0 chr1 29022833 29022886 -213641467 - L2 LINE L2 -5 3267 3210 * 734 225 7 0 chr1 29022852 29022994 -213641359 - MIR SINE MIR -23 239 97 309 287 93 9 chr1 29023860 29023968 -213640385 + MIR SINE MIR 31 147 -61 1372 90 0 0 chr1 29024194 29024372 -213639981 + AluSq SINE Alu 1 178 -135 302 0 0 26 chr1 29024787 29024826 -213639527 + (TG)n Simple_repeat Simple_repeat 1 38 0 744 256 92 0 chr1 29025687 29025882 -213638471 + MIR SINE MIR 40 252 -10 285 313 40 20 chr1 29026304 29026403 -213637950 + L2 LINE L2 3203 3303 -10 207 188 0 0 chr1 29026412 29026460 -213637893 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 23 78 0 0 chr1 29027002 29027053 -213637300 + AT_rich Low_complexity Low_complexity 1 51 0 2328 68 7 10 chr1 29027959 29028266 -213636087 + AluSx SINE Alu 1 306 -6 267 301 59 29 chr1 29028272 29028408 -213635945 + MIR3 SINE MIR 55 194 -14 1435 152 5 0 chr1 29030387 29030611 -213633742 - AluSx SINE Alu -87 225 1 526 292 6 0 chr1 29030673 29030841 -213633512 - L1MC4 LINE L1 -1 8041 7873 2135 112 0 0 chr1 29030881 29031177 -213633176 - AluSq SINE Alu -17 296 1 1424 98 0 29 chr1 29031462 29031666 -213632687 - Charlie3 DNA MER1_type -4 2706 2509 277 211 122 33 chr1 29032645 29032735 -213631618 + MIR SINE MIR 144 241 -21 2452 14 0 0 chr1 29035110 29035388 -213628965 - AluYa5 SINE Alu 0 311 34 330 87 0 0 chr1 29037247 29037293 -213627060 + (GA)n Simple_repeat Simple_repeat 1 46 0 332 22 0 22 chr1 29038274 29038320 -213626033 + (TG)n Simple_repeat Simple_repeat 2 46 0 206 309 144 0 chr1 29038705 29038802 -213625551 - MIR SINE MIR -6 256 146 2213 73 0 20 chr1 29038915 29039216 -213625137 + AluSx SINE Alu 1 295 -17 530 303 62 0 chr1 29039218 29039396 -213624957 - MIR SINE MIR -71 191 3 2473 140 3 5 chr1 29040020 29040405 -213623948 - Tigger2a DNA MER2_type -49 385 2 308 267 193 27 chr1 29040621 29040771 -213623582 - MIR SINE MIR -62 200 26 410 316 29 35 chr1 29040895 29041066 -213623287 - MIR3 SINE MIR -9 199 30 243 0 0 0 chr1 29041109 29041136 -213623217 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 224 0 0 chr1 29041740 29041789 -213622564 + (TG)n Simple_repeat Simple_repeat 2 50 0 1663 100 116 4 chr1 29042431 29042690 -213621663 - AluSx SINE Alu -12 300 13 23 0 0 0 chr1 29042807 29042830 -213621523 + AT_rich Low_complexity Low_complexity 1 23 0 222 254 34 0 chr1 29042854 29042913 -213621440 + (CATA)n Simple_repeat Simple_repeat 1 61 0 347 320 48 8 chr1 29043244 29043369 -213620984 + L2 LINE L2 2954 3083 -189 272 226 89 44 chr1 29043774 29043918 -213620435 + MIR SINE MIR 34 192 -64 392 248 9 44 chr1 29044494 29044576 -213619777 + MIR3 SINE MIR 76 154 -54 1530 194 3 3 chr1 29044576 29044870 -213619483 - AluJo SINE Alu -18 294 1 392 248 9 44 chr1 29044870 29044900 -213619453 + MIR3 SINE MIR 154 184 -24 411 21 0 0 chr1 29045201 29045249 -213619104 + (CA)n Simple_repeat Simple_repeat 2 49 0 372 241 0 35 chr1 29045784 29045871 -213618482 - AluJb SINE Alu -98 204 121 393 200 0 0 chr1 29045884 29045959 -213618394 - MER116 DNA Mariner -5 75 1 1825 115 41 24 chr1 29045999 29046294 -213618059 - AluSx SINE Alu -12 300 1 370 309 59 13 chr1 29046294 29046446 -213617907 - MIR SINE MIR -1 261 103 815 152 40 0 chr1 29046450 29046575 -213617778 + AluJ SINE Alu 7 136 -176 976 166 23 6 chr1 29046623 29046798 -213617555 + AluJ SINE Alu 120 297 -15 725 101 18 28 chr1 29046938 29047047 -213617306 + AluJo/FLAM SINE Alu 24 131 -181 2007 112 3 7 chr1 29047047 29047343 -213617010 + AluSq SINE Alu 1 295 -18 2341 76 0 16 chr1 29047343 29047657 -213616696 + AluY SINE Alu 1 309 -2 2198 103 0 3 chr1 29048304 29048616 -213615737 + AluSx SINE Alu 1 311 -1 237 344 16 0 chr1 29048647 29048711 -213615642 + MIR SINE MIR 50 114 -94 1488 168 30 60 chr1 29048720 29048903 -213615450 - MLT1A2 LTR MaLR -17 357 170 2069 118 3 0 chr1 29048903 29049207 -213615146 - AluSx SINE Alu -7 305 1 1976 112 0 14 chr1 29049215 29049372 -213614981 - AluSx SINE Alu -22 290 137 2299 76 10 3 chr1 29049372 29049675 -213614678 - AluY SINE Alu -6 305 1 1976 112 0 14 chr1 29049675 29049811 -213614542 - AluSx SINE Alu -175 137 1 1488 168 30 60 chr1 29049811 29049952 -213614401 - MLT1A2 LTR MaLR -211 163 34 22 0 0 0 chr1 29050236 29050258 -213614095 + AT_rich Low_complexity Low_complexity 1 22 0 2181 113 0 0 chr1 29050262 29050572 -213613781 + AluSg SINE Alu 1 310 0 266 310 110 10 chr1 29050583 29050683 -213613670 + MIR SINE MIR 37 146 -62 696 280 0 69 chr1 29050684 29050806 -213613547 - MIR SINE MIR -27 235 135 2092 120 16 3 chr1 29050806 29051114 -213613239 + AluSx SINE Alu 1 312 0 696 280 0 69 chr1 29051114 29051223 -213613130 - MIR SINE MIR -127 135 20 760 280 34 5 chr1 29051299 29051506 -213612847 - MIR SINE MIR -48 214 2 403 221 90 55 chr1 29051514 29051659 -213612694 - MIR SINE MIR -67 141 29 1333 253 40 53 chr1 29052350 29052593 -213611760 - L2 LINE L2 -14 3299 3054 2202 110 0 0 chr1 29052593 29052902 -213611451 + AluSx SINE Alu 1 309 -3 2236 92 0 0 chr1 29052904 29053197 -213611156 + AluSc SINE Alu 1 293 -16 2319 86 0 0 chr1 29053198 29053501 -213610852 + AluY SINE Alu 1 303 -8 1333 253 40 53 chr1 29053501 29053648 -213610705 - L2 LINE L2 -259 3054 2909 198 261 21 120 chr1 29053734 29053839 -213610514 - MIR SINE MIR -68 194 105 2070 135 0 0 chr1 29053839 29054142 -213610211 + AluSx SINE Alu 1 303 -9 198 261 21 120 chr1 29054142 29054178 -213610175 - MIR SINE MIR -157 105 67 212 200 40 20 chr1 29054206 29054256 -213610097 + L2 LINE L2 3263 3313 0 699 304 22 13 chr1 29054373 29054600 -213609753 - MIR SINE MIR -28 234 6 365 267 78 0 chr1 29054620 29054710 -213609643 - MIR3 SINE MIR -52 156 60 267 143 54 18 chr1 29055213 29055269 -213609084 - MIR SINE MIR -65 143 86 360 351 48 0 chr1 29055866 29056074 -213608279 - MIR SINE MIR -14 248 31 403 291 119 45 chr1 29056216 29056504 -213607849 + L2 LINE L2 2788 3093 -179 587 153 0 17 chr1 29056723 29056841 -213607512 + C-rich Low_complexity Low_complexity 2 117 0 195 69 0 0 chr1 29056835 29056864 -213607489 + (CCTA)n Simple_repeat Simple_repeat 4 32 0 * 1640 164 4 4 chr1 29056866 29057140 -213607213 - AluJb SINE Alu -36 276 3 185 317 33 0 chr1 29057140 29057200 -213607153 - MIR SINE MIR -105 103 42 188 370 14 0 chr1 29057774 29057847 -213606506 + L2 LINE L2 2929 3002 -270 202 263 40 61 chr1 29057878 29057977 -213606376 + L2 LINE L2 3141 3237 -35 788 233 83 31 chr1 29058170 29058398 -213605955 - MIR SINE MIR 0 262 23 2006 118 10 0 chr1 29058625 29058913 -213605440 + AluSx SINE Alu 1 291 -21 430 321 85 49 chr1 29058919 29059143 -213605210 + MIR SINE MIR 19 250 -12 408 244 65 16 chr1 29059288 29059411 -213604942 - MIR SINE MIR -86 176 48 212 313 60 27 chr1 29059623 29059793 -213604560 - MIR3 SINE MIR -69 139 15 486 225 58 51 chr1 29060104 29060242 -213604111 - L2 LINE L2 -1 3312 3174 203 286 219 9 chr1 29060256 29060361 -213603992 - MIR SINE MIR -108 154 28 549 221 103 29 chr1 29060864 29061000 -213603353 - L2 LINE L2 -12 3260 3115 1758 141 39 0 chr1 29061042 29061325 -213603028 + AluJb SINE Alu 1 294 -18 1996 124 7 0 chr1 29061326 29061617 -213602736 + AluSx SINE Alu 16 308 -4 800 220 22 58 chr1 29061617 29061674 -213602679 + MIR SINE MIR 47 105 -157 1822 109 84 0 chr1 29061674 29061972 -213602381 - AluSq SINE Alu 0 321 1 800 220 22 58 chr1 29061972 29062135 -213602218 + MIR SINE MIR 105 261 -1 252 304 33 11 chr1 29062192 29062284 -213602069 + MIR SINE MIR 157 250 -12 2185 93 3 16 chr1 29062298 29062608 -213601745 - AluSq SINE Alu -7 306 1 334 226 17 144 chr1 29062761 29062942 -213601411 - MIR SINE MIR -56 206 49 187 333 45 0 chr1 29063003 29063069 -213601284 + MIR SINE MIR 75 143 -119 228 193 70 35 chr1 29063227 29063284 -213601069 - MIR SINE MIR -68 140 85 708 243 136 37 chr1 29063579 29063793 -213600560 + MIR SINE MIR 28 262 0 299 213 93 0 chr1 29063951 29064026 -213600327 - MIR3 SINE MIR -32 176 95 2114 109 0 0 chr1 29064077 29064410 -213599943 + AluSx SINE Alu 1 333 0 341 265 12 0 chr1 29065265 29065348 -213599005 - MIR SINE MIR -84 124 41 2629 43 0 0 chr1 29065482 29065783 -213598570 + AluY SINE Alu 1 301 -10 232 219 31 62 chr1 29066448 29066576 -213597777 + (CAGAGA)n Simple_repeat Simple_repeat 2 125 0 256 259 232 36 chr1 29067610 29067824 -213596529 + MIR SINE MIR 3 248 -14 205 337 11 11 chr1 29067962 29068051 -213596302 - L3 LINE CR1 -116 1461 1373 209 228 120 33 chr1 29068057 29068149 -213596204 - MIR3 SINE MIR 0 208 109 826 248 13 18 chr1 29068194 29068420 -213595933 + MIR SINE MIR 37 261 -1 194 239 0 43 chr1 29068548 29068594 -213595759 - L2 LINE L2 -93 3179 3136 214 222 28 28 chr1 29068931 29069003 -213595350 + MIR SINE MIR 135 206 -56 306 0 0 0 chr1 29069326 29069360 -213594993 + (TG)n Simple_repeat Simple_repeat 2 35 0 245 298 0 9 chr1 29069438 29069552 -213594801 + (TG)n Simple_repeat Simple_repeat 2 114 0 199 175 25 0 chr1 29069949 29069989 -213594364 - MIR SINE MIR -84 124 84 1581 79 0 20 chr1 29069994 29070197 -213594156 - AluSg/x SINE Alu -7 305 107 438 302 70 14 chr1 29070832 29071047 -213593306 - L2 LINE L2 -183 3089 2863 2174 113 0 10 chr1 29071244 29071572 -213592781 + AluSx SINE Alu 1 312 0 285 333 0 0 chr1 29071932 29072028 -213592325 - MIR SINE MIR -114 148 53 608 129 147 0 chr1 29072439 29072555 -213591798 + AluJb SINE Alu 2 134 -178 770 102 28 0 chr1 29072557 29072665 -213591688 + HY1 scRNA scRNA 2 112 0 35 0 0 0 chr1 29072665 29072700 -213591653 + AT_rich Low_complexity Low_complexity 1 35 0 1666 194 0 22 chr1 29072700 29073014 -213591339 + AluJb SINE Alu 1 307 -5 379 183 37 0 chr1 29073091 29073173 -213591180 - MER69 DNA AcHobo -3 2523 2439 2461 84 0 0 chr1 29073173 29073470 -213590883 + AluSx SINE Alu 1 297 -15 1973 124 7 0 chr1 29073488 29073763 -213590590 + AluSq SINE Alu 1 277 -36 1105 61 0 0 chr1 29073771 29073903 -213590450 - AluY SINE Alu -179 132 1 2047 137 10 13 chr1 29074020 29074333 -213590020 - AluJb SINE Alu 0 312 1 408 271 13 33 chr1 29074508 29074659 -213589694 - MIR3 SINE MIR -50 158 11 2490 93 0 0 chr1 29074845 29075155 -213589198 - AluSg SINE Alu 0 310 1 280 232 95 11 chr1 29075157 29075252 -213589101 + L2 LINE L2 3211 3313 0 205 213 0 0 chr1 29075716 29075763 -213588590 + MIR SINE MIR 83 129 -79 1609 189 38 0 chr1 29075766 29076057 -213588296 - AluJb SINE Alu -10 302 1 2552 78 0 0 chr1 29076071 29076378 -213587975 - AluSx SINE Alu -5 307 1 2361 63 0 7 chr1 29076441 29076728 -213587625 - AluSc SINE Alu -24 285 1 231 36 0 0 chr1 29077388 29077416 -213586937 + (TG)n Simple_repeat Simple_repeat 1 28 0 1781 146 3 10 chr1 29077466 29077760 -213586593 + AluJb SINE Alu 2 293 -19 306 267 11 0 chr1 29077766 29077856 -213586497 - L1MA4A LINE L1 -25 6278 6188 1102 130 117 9 chr1 29077857 29078080 -213586273 - L1MA4A LINE L1 -179 6124 5878 523 96 0 36 chr1 29078101 29078184 -213586169 - AluSg/x SINE Alu -62 250 171 1597 86 5 5 chr1 29078286 29078495 -213585858 + AluSp SINE Alu 95 303 -10 562 153 34 17 chr1 29079168 29079286 -213585067 + AluSp SINE Alu 2 121 -192 1141 46 0 0 chr1 29079435 29079565 -213584788 + AluY SINE Alu 5 134 -177 2393 84 0 7 chr1 29079565 29079874 -213584479 + AluY SINE Alu 1 307 -4 2251 104 3 0 chr1 29080808 29081097 -213583256 - AluSx SINE Alu -22 290 1 2384 88 7 3 chr1 29081126 29081433 -213582920 - AluSx SINE Alu -2 310 3 1724 150 0 18 chr1 29081659 29081939 -213582414 - AluJb SINE Alu -10 302 28 10630 149 35 14 chr1 29081956 29083738 -213580615 - Ricksha DNA DNA 0 84 9 2082 142 0 0 chr1 29084864 29085159 -213579194 + AluSx SINE Alu 2 296 -16 1899 169 3 0 chr1 29085363 29085659 -213578694 + AluJo SINE Alu 1 297 -15 2228 56 95 0 chr1 29086048 29086332 -213578021 - AluY SINE Alu 0 311 1 1090 98 0 0 chr1 29086787 29086920 -213577433 + AluSq/x SINE Alu 1 133 -180 2406 79 7 0 chr1 29086926 29087229 -213577124 + AluSx SINE Alu 1 305 -7 337 326 112 25 chr1 29087259 29087535 -213576818 + L2 LINE L2 2316 2615 -699 201 302 115 22 chr1 29087581 29087720 -213576633 + L3 LINE CR1 868 1019 -558 757 324 147 19 chr1 29087809 29088293 -213576060 + L3 LINE CR1 1021 1566 -11 1837 178 0 16 chr1 29088324 29088633 -213575720 + AluJo SINE Alu 1 304 -8 1737 172 0 17 chr1 29089123 29089414 -213574939 + AluJo SINE Alu 9 294 -18 1560 133 19 108 chr1 29089790 29090114 -213574239 + AluJb SINE Alu 1 295 -17 326 157 43 0 chr1 29090517 29090584 -213573769 - AluJ/FLAM SINE Alu -245 57 1 553 183 44 15 chr1 29090673 29090810 -213573543 - MIR SINE MIR -2 260 120 705 168 0 0 chr1 29091710 29091817 -213572536 + FLAM_A SINE Alu 3 109 -33 2200 113 0 0 chr1 29091899 29092191 -213572162 + AluSx SINE Alu 1 292 -20 2186 96 11 0 chr1 29092697 29092979 -213571374 - AluSq SINE Alu -28 285 1 890 112 0 8 chr1 29094178 29094312 -213570041 - FLAM_C SINE Alu 0 133 1 3167 9 0 0 chr1 29094777 29095126 -213569227 + L1HS LINE L1 5803 6151 -4 25 0 0 0 chr1 29095126 29095151 -213569202 + AT_rich Low_complexity Low_complexity 1 25 0 680 101 10 0 chr1 29095151 29095250 -213569103 - HY3 scRNA scRNA -1 100 1 424 252 109 112 chr1 29095309 29095694 -213568659 + L2 LINE L2 2915 3298 -15 2324 98 3 0 chr1 29095696 29095992 -213568361 + AluSx SINE Alu 1 297 -15 2005 164 0 3 chr1 29096001 29096300 -213568053 + AluJb SINE Alu 1 298 -14 479 217 52 9 chr1 29096413 29096528 -213567825 - L2 LINE L2 0 3313 3194 1966 202 119 101 chr1 29096593 29097448 -213566905 + LTR28 LTR ERV1 1 1020 0 414 211 78 0 chr1 29097458 29097548 -213566805 - MER5A DNA MER1_type -84 105 9 1861 124 31 9 chr1 29097933 29098318 -213566035 - Ricksha DNA DNA -8 3238 2792 2983 26 3 0 chr1 29098719 29099065 -213565288 + L1PA4 LINE L1 5806 6152 -3 195 23 68 45 chr1 29099072 29099116 -213565237 + A-rich Low_complexity Low_complexity 3 47 0 270 170 0 21 chr1 29099116 29099163 -213565190 - Ricksha DNA DNA -445 2409 2364 4488 125 29 11 chr1 29099164 29099861 -213564492 - Ricksha DNA DNA -573 2673 1965 259 282 65 24 chr1 29100393 29100517 -213563836 - MER5B DNA MER1_type 0 178 50 591 113 0 10 chr1 29100919 29101016 -213563337 + L1MB8 LINE L1 6083 6178 0 181 342 44 9 chr1 29101047 29101161 -213563192 - MIR SINE MIR -108 154 37 2357 82 3 3 chr1 29101672 29101964 -213562389 - AluY SINE Alu -19 292 1 2458 84 7 0 chr1 29102078 29102388 -213561965 - AluSx SINE Alu 0 312 1 2032 139 150 11 chr1 29103216 29103583 -213560770 + MSTA LTR MaLR 10 427 -1 1900 121 4 0 chr1 29104572 29104829 -213559524 + AluSq SINE Alu 1 258 -55 24 0 0 0 chr1 29105298 29105322 -213559031 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr1 29105922 29105953 -213558400 + AT_rich Low_complexity Low_complexity 1 31 0 2658 55 7 0 chr1 29106202 29106510 -213557843 - AluY SINE Alu -1 310 1 582 313 85 0 chr1 29106537 29106761 -213557592 - MIR SINE MIR -18 244 2 5779 162 80 66 chr1 29106769 29106853 -213557500 - Charlie1a DNA MER1_type -1306 1455 1374 2373 101 3 0 chr1 29106853 29107159 -213557194 - AluSp SINE Alu -6 307 1 5779 162 80 66 chr1 29107159 29107270 -213557083 - Charlie1a DNA MER1_type -1387 1374 1266 2173 131 0 0 chr1 29107270 29107567 -213556786 + AluSq SINE Alu 1 297 -16 5779 162 80 66 chr1 29107567 29107827 -213556526 - Charlie1a DNA MER1_type -1495 1266 1011 2347 84 0 7 chr1 29107827 29108124 -213556229 - AluSc SINE Alu -14 295 1 5779 162 80 66 chr1 29108124 29108685 -213555668 - Charlie1a DNA MER1_type -1750 1011 409 2410 86 0 0 chr1 29108685 29108987 -213555366 + AluY SINE Alu 3 304 -7 5779 162 80 66 chr1 29108987 29109402 -213554951 - Charlie1a DNA MER1_type -2352 409 1 289 278 0 37 chr1 29109403 29109511 -213554842 + MIR SINE MIR 158 261 -1 1267 209 67 28 chr1 29109622 29109904 -213554449 + AluJo SINE Alu 1 293 -19 31 26 0 0 chr1 29110016 29110054 -213554299 + AT_rich Low_complexity Low_complexity 1 38 0 2145 99 0 3 chr1 29110221 29110503 -213553850 + AluSg1 SINE Alu 23 303 -6 933 152 88 0 chr1 29110810 29110981 -213553372 - AluSx SINE Alu -126 186 1 33 0 0 0 chr1 29111173 29111206 -213553147 + AT_rich Low_complexity Low_complexity 1 33 0 2157 128 0 3 chr1 29111637 29111934 -213552419 + AluSq SINE Alu 1 296 -17 1825 168 3 20 chr1 29111948 29112245 -213552108 + AluJb SINE Alu 1 292 -20 2204 103 7 3 chr1 29112647 29112947 -213551406 - AluY SINE Alu -10 301 1 249 57 0 0 chr1 29113107 29113142 -213551211 + (TC)n Simple_repeat Simple_repeat 2 36 0 322 277 50 57 chr1 29113391 29113550 -213550803 - HAL1b LINE L1 0 1348 1191 2317 112 0 0 chr1 29113577 29113890 -213550463 + AluSq SINE Alu 1 313 0 24 0 0 0 chr1 29113912 29113936 -213550417 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr1 29114082 29114120 -213550233 + AT_rich Low_complexity Low_complexity 1 38 0 817 212 7 0 chr1 29114120 29114271 -213550082 - FRAM SINE Alu -14 152 1 1110 154 6 0 chr1 29114406 29114575 -213549778 + AluJo SINE Alu 1 170 -142 225 158 53 0 chr1 29114575 29114613 -213549740 + Tigger3(Golem) DNA MER2_type 2997 3036 0 2230 100 3 52 chr1 29114818 29115147 -213549206 + AluSp SINE Alu 1 313 0 2147 102 0 43 chr1 29115707 29116031 -213548322 - AluSx SINE Alu -2 310 1 1658 185 0 20 chr1 29116173 29116470 -213547883 - AluJo SINE Alu -21 291 1 267 117 34 6 chr1 29116600 29116646 -213547707 + MIR SINE MIR 101 201 -7 1634 164 173 21 chr1 29116832 29117259 -213547094 + LTR54B LTR ERV1 1 492 -6 1508 183 56 14 chr1 29117476 29117760 -213546593 - AluJb SINE Alu -16 296 1 355 273 312 7 chr1 29117784 29117938 -213546415 - MIR SINE MIR -1 261 61 228 220 0 68 chr1 29117961 29118020 -213546333 - L2 LINE L2 -2 3270 3216 1481 205 70 62 chr1 29118065 29118548 -213545805 + HAL1 LINE L1 1354 1840 -667 185 343 0 0 chr1 29118809 29118882 -213545471 + MIR3 SINE MIR 111 183 -25 236 200 0 0 chr1 29118884 29118929 -213545424 + Alu SINE Alu 120 164 -136 762 115 0 0 chr1 29118929 29119025 -213545328 - AluSq SINE Alu -118 195 100 1744 164 3 11 chr1 29119025 29119312 -213545041 - AluJb SINE Alu -27 285 1 180 0 0 0 chr1 29119318 29119338 -213545015 + (T)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr1 29119460 29119482 -213544871 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 29119866 29119887 -213544466 + AT_rich Low_complexity Low_complexity 1 21 0 2556 62 0 0 chr1 29120016 29120322 -213544031 + AluY SINE Alu 1 306 -5 262 286 0 0 chr1 29121371 29121427 -213542926 - L2 LINE L2 0 3272 3217 2281 87 6 34 chr1 29121442 29121764 -213542589 + AluSq SINE Alu 1 313 0 1693 113 0 17 chr1 29121762 29122002 -213542351 + AluSg/x SINE Alu 71 306 -4 * 757 224 132 26 chr1 29122104 29122332 -213542021 - MIR SINE MIR -3 259 8 1984 136 7 13 chr1 29123947 29124255 -213540098 - AluJb SINE Alu -5 307 2 206 308 0 77 chr1 29124280 29124371 -213539982 - MIR SINE MIR -82 126 43 1006 182 62 6 chr1 29124406 29124582 -213539771 - MER5A DNA MER1_type -2 187 2 425 333 49 19 chr1 29124591 29124753 -213539600 - MER5A DNA MER1_type 0 189 23 1264 187 0 18 chr1 29124893 29125112 -213539241 - AluJb SINE Alu -97 215 1 416 286 130 0 chr1 29125115 29125300 -213539053 - L1M4 LINE L1 -2727 3419 3211 249 57 0 0 chr1 29125325 29125360 -213538993 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2153 107 0 14 chr1 29125360 29125651 -213538702 - AluSq SINE Alu -26 287 1 253 122 0 20 chr1 29125651 29125700 -213538653 - L1MA7 LINE L1 -14 6277 6230 * 278 138 0 17 chr1 29125689 29125747 -213538606 - L1M4 LINE L1 -2918 3228 3172 2419 64 17 3 chr1 29125776 29126074 -213538279 - AluSp SINE Alu -11 302 1 238 225 81 20 chr1 29126111 29126207 -213538146 - MIR SINE MIR -82 126 74 478 238 0 10 chr1 29126224 29126325 -213538028 + LTR28 LTR ERV1 921 1020 0 1890 126 23 7 chr1 29126934 29127244 -213537109 - Ricksha DNA DNA -8 3246 2932 486 117 65 13 chr1 29127242 29127319 -213537034 - Ricksha DNA DNA -379 2475 2395 * 3068 29 3 3 chr1 29127720 29128067 -213536286 + L1PA4 LINE L1 5806 6152 -3 190 26 79 26 chr1 29128074 29128112 -213536241 + A-rich Low_complexity Low_complexity 3 42 0 629 89 0 0 chr1 29128213 29128292 -213536061 - AluS SINE Alu -233 80 2 2007 121 7 0 chr1 29128302 29128637 -213535716 - AluSx SINE Alu 0 337 1 2005 102 4 18 chr1 29128725 29129000 -213535353 - AluY SINE Alu -40 271 1 1849 123 43 0 chr1 29129121 29129397 -213534956 - AluSx SINE Alu -19 293 6 430 333 49 14 chr1 29129424 29129568 -213534785 - L2 LINE L2 -5 3267 3119 496 82 0 0 chr1 29129607 29129668 -213534685 - AluSx SINE Alu -16 294 234 1338 134 16 0 chr1 29129668 29129854 -213534499 - AluSx SINE Alu -123 189 1 647 202 60 44 chr1 29129882 29130065 -213534288 - L1MC5 LINE L1 -44 7917 7732 363 368 37 37 chr1 29130570 29130733 -213533620 - L2 LINE L2 -6 3266 3104 302 180 83 36 chr1 29130880 29130986 -213533367 + MIR SINE MIR 42 146 -62 2074 142 0 3 chr1 29131550 29131846 -213532507 + AluSx SINE Alu 1 295 -17 280 304 36 18 chr1 29131860 29131972 -213532381 - MIR3 SINE MIR -28 180 67 784 170 67 0 chr1 29132095 29132230 -213532123 + AluJb SINE Alu 158 301 -11 2165 125 0 10 chr1 29132287 29132600 -213531753 - AluSx SINE Alu -2 310 1 790 189 12 27 chr1 29133035 29133218 -213531135 - L1MC4 LINE L1 -1396 6599 6433 346 205 134 27 chr1 29133669 29133781 -213530572 - L1ME4a LINE L1 -3 6118 5995 1708 92 40 7 chr1 29134732 29135047 -213529306 - AluSg1 SINE Alu 0 324 1 1262 259 150 30 chr1 29135207 29135758 -213528595 + L2 LINE L2 2661 3313 0 2330 92 0 10 chr1 29135968 29136274 -213528079 - AluSq SINE Alu -10 303 1 205 343 172 54 chr1 29137052 29137349 -213527004 - L2 LINE L2 -4 3268 2937 1112 103 0 39 chr1 29137528 29137723 -213526630 - AluSg/x SINE Alu 0 320 132 2068 109 14 17 chr1 29137723 29138017 -213526336 - AluSx SINE Alu -19 293 1 206 368 0 15 chr1 29138642 29138710 -213525643 - MIR SINE MIR -123 85 19 444 19 0 0 chr1 29138783 29138836 -213525517 + (CA)n Simple_repeat Simple_repeat 1 53 0 1103 157 32 19 chr1 29139547 29139763 -213524590 + L1MB7 LINE L1 5940 6158 -26 562 103 0 0 chr1 29139763 29139817 -213524536 - MADE1 DNA Mariner -1 79 23 2353 82 0 10 chr1 29139817 29140120 -213524233 + AluSq SINE Alu 1 300 -13 562 103 0 0 chr1 29140120 29140143 -213524210 - MADE1 DNA Mariner -56 24 2 262 299 133 45 chr1 29140592 29140716 -213523637 - MIR SINE MIR -92 116 22 2405 88 0 3 chr1 29141125 29141430 -213522923 - AluSq SINE Alu -9 304 1 1464 147 67 70 chr1 29141435 29141735 -213522618 - AluJb SINE Alu -13 299 1 1878 128 6 42 chr1 29141881 29142193 -213522160 + AluJb SINE Alu 12 312 0 807 119 0 48 chr1 29142212 29142338 -213522015 + AluSq/x SINE Alu 14 133 -179 2201 128 3 0 chr1 29142664 29142969 -213521384 + AluSx SINE Alu 1 306 -6 2124 119 3 25 chr1 29143333 29143652 -213520701 - AluJb SINE Alu 0 312 1 1473 173 4 0 chr1 29143724 29143955 -213520398 - AluJb SINE Alu -20 292 61 29 21 0 21 chr1 29144051 29144070 -213520283 + AT_rich Low_complexity Low_complexity 1 19 -27 890 138 0 8 chr1 29144070 29144193 -213520160 + FLAM_C SINE Alu 5 126 -7 29 21 0 21 chr1 29144193 29144220 -213520133 + AT_rich Low_complexity Low_complexity 19 46 0 2016 150 0 0 chr1 29144481 29144768 -213519585 + AluSx SINE Alu 5 291 -21 271 272 100 56 chr1 29145293 29145473 -213518880 + L2 LINE L2 3120 3307 -6 2275 104 0 13 chr1 29146538 29146845 -213517508 + AluSc SINE Alu 1 303 -6 231 277 294 0 chr1 29148059 29148178 -213516175 + MER5B DNA MER1_type 1 154 -24 1010 202 34 0 chr1 29148199 29148377 -213515976 + MER5A DNA MER1_type 2 185 -4 180 125 0 0 chr1 29148565 29148597 -213515756 + (CATG)n Simple_repeat Simple_repeat 4 35 0 300 200 0 0 chr1 29148600 29148655 -213515698 - AluJ/FRAM SINE Alu -20 282 228 981 197 10 56 chr1 29148849 29149153 -213515200 + L1MC5 LINE L1 7347 7636 -325 1295 79 18 0 chr1 29149153 29149317 -213515036 + AluSq SINE Alu 1 167 -146 2240 98 0 13 chr1 29149629 29149936 -213514417 - AluSg SINE Alu -7 303 1 1866 136 0 79 chr1 29150280 29150610 -213513743 - AluJb SINE Alu -8 304 1 315 0 0 0 chr1 29150785 29150820 -213513533 + (TG)n Simple_repeat Simple_repeat 2 36 0 2162 106 7 3 chr1 29151047 29151340 -213513013 + AluSq SINE Alu 1 294 -19 288 279 72 27 chr1 29151809 29151920 -213512433 + MIR SINE MIR 21 136 -126 649 236 48 125 chr1 29151963 29152280 -213512073 + L1ME4a LINE L1 5587 5927 -243 2224 111 0 0 chr1 29152280 29152569 -213511784 + AluSg SINE Alu 1 289 -21 198 0 0 0 chr1 29152572 29152594 -213511759 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 649 236 48 125 chr1 29152594 29152687 -213511666 + L1ME4a LINE L1 5929 5969 -201 1656 182 18 3 chr1 29152734 29153020 -213511333 - AluJo SINE Alu -22 290 1 22 0 0 0 chr1 29153020 29153042 -213511311 + AT_rich Low_complexity Low_complexity 1 22 0 2273 92 0 7 chr1 29153222 29153514 -213510839 - AluSg SINE Alu -20 290 1 2236 56 49 26 chr1 29153646 29153950 -213510403 - AluY SINE Alu 0 311 1 1769 146 43 0 chr1 29154357 29154637 -213509716 - AluSx SINE Alu -20 292 1 2005 93 30 0 chr1 29154731 29155046 -213509307 - AluSc SINE Alu 0 323 1 901 73 0 0 chr1 29155775 29155884 -213508469 + AluY SINE Alu 1 109 -202 628 126 0 0 chr1 29155896 29155983 -213508370 + AluSg/x SINE Alu 208 294 -15 1807 157 17 7 chr1 29157070 29157357 -213506996 - AluJb SINE Alu -4 308 19 2141 95 18 0 chr1 29157364 29157647 -213506706 + AluSx SINE Alu 18 305 -7 6299 99 36 20 chr1 29157667 29158510 -213505843 - L1MA1 LINE L1 -1 6301 5442 2142 113 20 7 chr1 29158510 29158811 -213505542 - AluSx SINE Alu -7 305 1 6299 99 36 20 chr1 29158811 29158959 -213505394 - L1MA1 LINE L1 -860 5442 5298 4760 175 28 16 chr1 29159235 29160082 -213504271 + MER21B LTR ERV1 1 857 -6 273 219 171 0 chr1 29160113 29160218 -213504135 + L1ME4a LINE L1 5965 6087 -34 2419 74 7 0 chr1 29160259 29160568 -213503785 - AluSp SINE Alu -2 311 1 1554 165 40 47 chr1 29160789 29161086 -213503267 - AluJb SINE Alu -17 295 1 2420 71 0 0 chr1 29161515 29161811 -213502542 - AluSx SINE Alu -15 297 2 648 232 43 82 chr1 29162144 29162377 -213501976 + MLT1H1 LTR MaLR 327 550 -5 2059 87 22 4 chr1 29162439 29162754 -213501599 + AluSx SINE Alu 1 320 0 6558 197 71 85 chr1 29162754 29163386 -213500967 + L1MC3 LINE L1 3722 4361 -3424 1481 169 104 0 chr1 29163386 29163646 -213500707 + AluJb SINE Alu 11 297 -15 6558 197 71 85 chr1 29163646 29164489 -213499864 + L1MC3 LINE L1 4361 5214 -2571 2256 102 0 3 chr1 29164489 29164793 -213499560 + AluSg SINE Alu 1 303 -7 6558 197 71 85 chr1 29164793 29166247 -213498106 + L1MC3 LINE L1 5214 6686 -1099 2137 112 0 0 chr1 29166247 29166543 -213497810 - AluSc SINE Alu -13 296 1 6558 197 71 85 chr1 29166543 29166713 -213497640 + L1MC3 LINE L1 6686 6857 -928 270 0 0 0 chr1 29166713 29166743 -213497610 + (TG)n Simple_repeat Simple_repeat 2 31 0 1539 155 7 24 chr1 29166743 29167033 -213497320 - AluSx SINE Alu -27 285 1 1341 192 72 10 chr1 29167042 29167334 -213497019 - AluJb SINE Alu -2 310 1 6558 197 71 85 chr1 29167334 29167476 -213496877 + L1MC3 LINE L1 6864 7006 -779 351 0 0 0 chr1 29167476 29167515 -213496838 + (CA)n Simple_repeat Simple_repeat 2 40 0 6558 197 71 85 chr1 29167515 29167722 -213496631 + L1MC3 LINE L1 7006 7214 -571 319 275 11 11 chr1 29167722 29167813 -213496540 + MLT1F1 LTR MaLR 35 125 -442 6558 197 71 85 chr1 29167813 29168360 -213495993 + L1MC3 LINE L1 7214 7754 -31 972 197 99 5 chr1 29168413 29168626 -213495727 + L1MD3 LINE L1 7532 7764 -231 226 348 67 0 chr1 29168761 29168850 -213495503 + MIR SINE MIR 54 148 -114 2132 121 3 0 chr1 29169760 29170066 -213494287 + AluSx SINE Alu 1 307 -5 395 114 86 0 chr1 29170213 29170283 -213494070 + MER69 DNA AcHobo 1 76 -2450 605 205 57 52 chr1 29170283 29170348 -213494005 + MER69 DNA AcHobo 2162 2225 -301 2272 73 0 20 chr1 29170348 29170651 -213493702 + AluY SINE Alu 1 297 -14 605 205 57 52 chr1 29170651 29170795 -213493558 + MER69 DNA AcHobo 2225 2372 -154 1185 197 5 0 chr1 29170847 29171065 -213493288 - AluJb SINE Alu -93 219 1 450 167 83 0 chr1 29171065 29171173 -213493180 + MER69 DNA AcHobo 2357 2473 -53 2184 101 0 0 chr1 29171397 29171694 -213492659 + AluSx SINE Alu 1 297 -15 1684 155 6 50 chr1 29171714 29172031 -213492322 + AluJo SINE Alu 1 303 -9 1508 160 3 21 chr1 29172038 29172320 -213492033 + L1MB8 LINE L1 5902 6178 0 2249 73 3 10 chr1 29172349 29172650 -213491703 + AluSp SINE Alu 2 300 -13 2398 50 0 34 chr1 29172652 29172974 -213491379 + AluY SINE Alu 1 311 0 610 257 33 70 chr1 29173038 29173279 -213491074 - MIR SINE MIR 0 262 31 209 231 39 19 chr1 29174489 29174541 -213489812 + GA-rich Low_complexity Low_complexity 4 56 0 181 318 106 0 chr1 29174595 29174661 -213489692 + MIR SINE MIR 184 256 -6 277 296 211 0 chr1 29175456 29175608 -213488745 - MIR SINE MIR -6 256 73 319 257 250 20 chr1 29175692 29175840 -213488513 + MIR SINE MIR 48 229 -33 256 207 240 41 chr1 29175804 29175925 -213488428 - MIR SINE MIR 0 262 118 * 370 98 0 0 chr1 29175925 29175976 -213488377 + MSTA LTR MaLR 1 51 -377 304 48 0 177 chr1 29175972 29176034 -213488319 - AluSg/x SINE Alu -169 131 84 * 1094 153 39 20 chr1 29176034 29176237 -213488116 - AluJo SINE Alu -92 220 14 1146 277 82 47 chr1 29176306 29176771 -213487582 + L2 LINE L2 2715 3205 -108 1608 158 3 58 chr1 29176771 29176919 -213487434 + AluJo SINE Alu 1 125 -187 2266 84 3 0 chr1 29176919 29177217 -213487136 + AluSg SINE Alu 1 299 -11 1608 158 3 58 chr1 29177217 29177378 -213486975 + AluJo SINE Alu 125 293 -19 1146 277 82 47 chr1 29177378 29177491 -213486862 + L2 LINE L2 3205 3313 0 1873 216 62 43 chr1 29177497 29177635 -213486718 - MLT1F LTR MaLR 0 542 408 2043 117 3 3 chr1 29177635 29177934 -213486419 - AluSx SINE Alu -13 299 1 1873 216 62 43 chr1 29177934 29178327 -213486026 - MLT1F LTR MaLR -134 408 1 2114 89 62 0 chr1 29178788 29179080 -213485273 + AluSx SINE Alu 2 311 -1 1220 188 52 44 chr1 29179154 29179257 -213485096 + AluJo SINE Alu 1 102 -210 2180 101 0 3 chr1 29179257 29179555 -213484798 + AluSg SINE Alu 3 299 -11 1220 188 52 44 chr1 29179555 29179723 -213484630 + AluJo SINE Alu 102 274 -38 23 0 0 0 chr1 29179891 29179914 -213484439 + AT_rich Low_complexity Low_complexity 1 23 0 2209 103 0 0 chr1 29179914 29180216 -213484137 + AluSg SINE Alu 1 302 -8 216 0 0 0 chr1 29180219 29180243 -213484110 + (TA)n Simple_repeat Simple_repeat 1 24 0 642 218 0 0 chr1 29181114 29181224 -213483129 + FLAM_A SINE Alu 1 110 -32 25 0 0 0 chr1 29181226 29181251 -213483102 + AT_rich Low_complexity Low_complexity 1 25 0 1668 147 32 3 chr1 29181251 29181558 -213482795 + AluJb SINE Alu 1 312 0 37 23 0 0 chr1 29182335 29182379 -213481974 + AT_rich Low_complexity Low_complexity 1 44 0 1960 123 34 3 chr1 29182427 29182720 -213481633 + AluSx SINE Alu 1 302 -10 683 190 0 70 chr1 29183409 29183551 -213480802 - FLAM_C SINE Alu 0 133 2 1383 103 0 10 chr1 29183830 29184024 -213480329 + AluSc SINE Alu 1 192 -117 1408 178 3 53 chr1 29184287 29184590 -213479763 + AluJo SINE Alu 1 288 -24 2032 122 0 3 chr1 29184603 29184899 -213479454 + AluSc SINE Alu 1 295 -14 276 30 0 0 chr1 29184900 29184933 -213479420 + (CA)n Simple_repeat Simple_repeat 2 34 0 1946 125 7 7 chr1 29185091 29185386 -213478967 + AluJo SINE Alu 1 295 -17 2051 104 7 3 chr1 29185540 29185827 -213478526 - AluSx SINE Alu -23 289 2 256 269 67 75 chr1 29185997 29186131 -213478222 - MIR SINE MIR -12 250 118 233 115 0 58 chr1 29186430 29186482 -213477871 + (A)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr1 29187272 29187294 -213477059 + GC_rich Low_complexity Low_complexity 1 22 0 204 306 37 0 chr1 29187324 29187458 -213476895 + (CCG)n Simple_repeat Simple_repeat 2 140 0 28 29 0 0 chr1 29187627 29187662 -213476691 + GC_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 29187723 29187744 -213476609 + GC_rich Low_complexity Low_complexity 1 21 0 384 226 121 16 chr1 29188041 29188165 -213476188 + MIR3 SINE MIR 61 197 -11 208 196 41 10 chr1 29188489 29188554 -213475799 - MIR SINE MIR -96 166 100 250 299 0 15 chr1 29188642 29188709 -213475644 + MIR SINE MIR 23 88 -174 2114 70 32 0 chr1 29188709 29189015 -213475338 - AluSc SINE Alu 0 309 1 746 189 0 8 chr1 29189069 29189201 -213475152 + FRAM SINE Alu 28 158 -18 553 175 16 71 chr1 29189222 29189265 -213475088 + MIR SINE MIR 144 188 -74 2064 119 3 3 chr1 29189265 29189568 -213474785 + AluSq SINE Alu 1 303 -10 553 175 16 71 chr1 29189568 29189650 -213474703 + MIR SINE MIR 188 262 0 562 170 200 77 chr1 29189798 29190033 -213474320 + L2 LINE L2 3050 3313 0 380 233 8 90 chr1 29190034 29190126 -213474227 - MIR SINE MIR -57 151 72 2068 92 7 17 chr1 29190126 29190421 -213473932 - AluSp SINE Alu -21 292 1 380 233 8 90 chr1 29190421 29190461 -213473892 - MIR SINE MIR -136 72 30 302 276 52 17 chr1 29191964 29192080 -213472273 - L1ME4a LINE L1 -54 6067 5948 1286 151 8 29 chr1 29192080 29192318 -213472035 - AluJb SINE Alu -16 296 64 206 61 0 30 chr1 29192348 29192381 -213471972 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 1608 167 14 17 chr1 29192381 29192668 -213471685 - AluJo SINE Alu -26 286 1 216 86 0 0 chr1 29192673 29192708 -213471645 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 873 212 0 18 chr1 29192714 29192879 -213471474 - AluJo SINE Alu -30 282 121 393 200 0 0 chr1 29192892 29192967 -213471386 - MER116 DNA Mariner -5 75 1 1771 122 41 24 chr1 29193007 29193301 -213471052 - AluSx SINE Alu -13 299 1 342 169 78 0 chr1 29193373 29193450 -213470903 - L1ME4a LINE L1 -333 5788 5706 2174 94 0 0 chr1 29193452 29193762 -213470591 + AluSg SINE Alu 1 310 0 2009 122 0 0 chr1 29193766 29194062 -213470291 - AluSx SINE Alu -16 296 1 370 309 59 13 chr1 29194062 29194214 -213470139 - MIR SINE MIR -1 261 103 828 151 32 0 chr1 29194218 29194344 -213470009 + AluJ SINE Alu 7 136 -176 976 166 23 6 chr1 29194392 29194567 -213469786 + AluJ SINE Alu 120 297 -15 717 102 19 28 chr1 29194707 29194815 -213469538 + AluJo/FLAM SINE Alu 24 130 -182 2022 108 3 7 chr1 29194815 29195111 -213469242 + AluSq SINE Alu 1 295 -18 2214 79 26 13 chr1 29195111 29195416 -213468937 + AluY SINE Alu 1 309 -2 2160 109 0 3 chr1 29196063 29196376 -213467977 + AluSx SINE Alu 1 312 0 232 344 16 0 chr1 29196408 29196472 -213467881 + MIR SINE MIR 50 114 -94 1488 168 30 60 chr1 29196481 29196664 -213467689 - MLT1A2 LTR MaLR -17 357 170 2123 112 3 0 chr1 29196664 29196967 -213467386 - AluSx SINE Alu -8 304 1 1990 109 0 14 chr1 29196975 29197132 -213467221 - AluSx SINE Alu -22 290 137 2286 74 10 3 chr1 29197132 29197430 -213466923 - AluY SINE Alu -11 300 1 1990 109 0 14 chr1 29197430 29197566 -213466787 - AluSx SINE Alu -175 137 1 1488 168 30 60 chr1 29197566 29197707 -213466646 - MLT1A2 LTR MaLR -211 163 34 22 0 0 0 chr1 29197991 29198013 -213466340 + AT_rich Low_complexity Low_complexity 1 22 0 2188 113 0 0 chr1 29198017 29198327 -213466026 + AluSg SINE Alu 1 310 0 266 310 110 10 chr1 29198338 29198438 -213465915 + MIR SINE MIR 37 146 -62 696 280 0 69 chr1 29198439 29198561 -213465792 - MIR SINE MIR -27 235 135 2092 120 16 3 chr1 29198561 29198869 -213465484 + AluSx SINE Alu 1 312 0 696 280 0 69 chr1 29198869 29198978 -213465375 - MIR SINE MIR -127 135 20 760 280 34 5 chr1 29199054 29199261 -213465092 - MIR SINE MIR -48 214 2 403 221 90 55 chr1 29199269 29199414 -213464939 - MIR SINE MIR -67 141 29 1333 253 40 53 chr1 29200105 29200348 -213464005 - L2 LINE L2 -14 3299 3054 2202 110 0 0 chr1 29200348 29200657 -213463696 + AluSx SINE Alu 1 309 -3 2236 92 0 0 chr1 29200659 29200952 -213463401 + AluSc SINE Alu 1 293 -16 2319 86 0 0 chr1 29200953 29201256 -213463097 + AluY SINE Alu 1 303 -8 1333 253 40 53 chr1 29201256 29201403 -213462950 - L2 LINE L2 -259 3054 2909 198 261 21 120 chr1 29201489 29201594 -213462759 - MIR SINE MIR -68 194 105 2075 137 0 0 chr1 29201594 29201900 -213462453 + AluSx SINE Alu 1 306 -6 198 261 21 120 chr1 29201900 29201936 -213462417 - MIR SINE MIR -157 105 67 212 200 40 20 chr1 29201964 29202014 -213462339 + L2 LINE L2 3263 3313 0 699 304 22 13 chr1 29202131 29202358 -213461995 - MIR SINE MIR -28 234 6 365 267 78 0 chr1 29202378 29202468 -213461885 - MIR3 SINE MIR -52 156 60 267 143 54 18 chr1 29202971 29203027 -213461326 - MIR SINE MIR -65 143 86 360 351 48 0 chr1 29203624 29203832 -213460521 - MIR SINE MIR -14 248 31 403 291 119 45 chr1 29203974 29204262 -213460091 + L2 LINE L2 2788 3093 -179 659 158 0 15 chr1 29204481 29204614 -213459739 + C-rich Low_complexity Low_complexity 2 132 0 195 69 0 0 chr1 29204608 29204637 -213459716 + (CCTA)n Simple_repeat Simple_repeat 4 32 0 * 1640 164 4 4 chr1 29204639 29204913 -213459440 - AluJb SINE Alu -36 276 3 185 317 33 0 chr1 29204913 29204973 -213459380 - MIR SINE MIR -105 103 42 188 370 14 0 chr1 29205543 29205616 -213458737 + L2 LINE L2 2929 3002 -270 202 263 40 61 chr1 29205647 29205746 -213458607 + L2 LINE L2 3141 3237 -35 788 233 83 31 chr1 29205939 29206167 -213458186 - MIR SINE MIR 0 262 23 2022 115 10 0 chr1 29206394 29206682 -213457671 + AluSx SINE Alu 1 291 -21 430 321 85 49 chr1 29206688 29206912 -213457441 + MIR SINE MIR 19 250 -12 408 244 65 16 chr1 29207057 29207180 -213457173 - MIR SINE MIR -86 176 48 212 313 60 27 chr1 29207392 29207562 -213456791 - MIR3 SINE MIR -69 139 15 486 225 58 51 chr1 29207873 29208011 -213456342 - L2 LINE L2 -1 3312 3174 203 286 219 9 chr1 29208025 29208130 -213456223 - MIR SINE MIR -108 154 28 549 221 103 29 chr1 29208633 29208769 -213455584 - L2 LINE L2 -12 3260 3115 1744 145 39 0 chr1 29208811 29209094 -213455259 + AluJb SINE Alu 1 294 -18 2017 120 7 0 chr1 29209095 29209387 -213454966 + AluSx SINE Alu 16 309 -3 800 220 22 58 chr1 29209387 29209444 -213454909 + MIR SINE MIR 47 105 -157 1809 113 84 0 chr1 29209444 29209742 -213454611 - AluSq SINE Alu 0 321 1 800 220 22 58 chr1 29209742 29209905 -213454448 + MIR SINE MIR 105 261 -1 272 299 31 10 chr1 29209962 29210059 -213454294 + MIR SINE MIR 157 255 -7 2194 93 3 16 chr1 29210063 29210375 -213453978 - AluSq SINE Alu -5 308 1 334 226 17 144 chr1 29210528 29210709 -213453644 - MIR SINE MIR -56 206 49 187 333 45 0 chr1 29210770 29210836 -213453517 + MIR SINE MIR 75 143 -119 228 193 70 35 chr1 29210994 29211051 -213453302 - MIR SINE MIR -68 140 85 708 243 136 37 chr1 29211346 29211560 -213452793 + MIR SINE MIR 28 262 0 299 213 93 0 chr1 29211718 29211793 -213452560 - MIR3 SINE MIR -32 176 95 2129 105 0 0 chr1 29211844 29212183 -213452170 + AluSx SINE Alu 1 339 0 341 265 12 0 chr1 29213038 29213121 -213451232 - MIR SINE MIR -84 124 41 2497 43 0 0 chr1 29213255 29213556 -213450797 + AluY SINE Alu 1 301 -10 232 219 31 62 chr1 29214221 29214349 -213450004 + (CAGAGA)n Simple_repeat Simple_repeat 2 125 0 306 273 220 31 chr1 29215383 29215605 -213448748 + MIR SINE MIR 3 256 -6 239 347 11 11 chr1 29215735 29215830 -213448523 - L3 LINE CR1 -116 1461 1367 232 239 120 33 chr1 29215830 29215922 -213448431 - MIR3 SINE MIR 0 208 109 889 248 13 18 chr1 29215967 29216193 -213448160 + MIR SINE MIR 37 261 -1 187 261 0 43 chr1 29216321 29216367 -213447986 - L2 LINE L2 -93 3179 3136 206 236 28 28 chr1 29216704 29216776 -213447577 + MIR SINE MIR 135 206 -56 450 0 0 0 chr1 29217099 29217149 -213447204 + (TG)n Simple_repeat Simple_repeat 2 51 0 245 298 0 9 chr1 29217227 29217341 -213447012 + (TG)n Simple_repeat Simple_repeat 2 114 0 204 175 25 0 chr1 29217738 29217778 -213446575 - MIR SINE MIR -84 124 84 1493 80 0 20 chr1 29217781 29217981 -213446372 - AluSg/x SINE Alu -10 300 105 473 307 70 14 chr1 29218616 29218831 -213445522 - L2 LINE L2 -183 3089 2863 2253 102 0 9 chr1 29219028 29219343 -213445010 + AluSx SINE Alu 1 312 0 356 313 0 0 chr1 29219722 29219818 -213444535 - MIR SINE MIR -114 148 53 643 138 138 0 chr1 29220228 29220344 -213444009 + FLAM_C SINE Alu 1 132 -1 772 102 28 0 chr1 29220347 29220455 -213443898 + HY1 scRNA scRNA 2 112 0 35 0 0 0 chr1 29220455 29220490 -213443863 + AT_rich Low_complexity Low_complexity 1 35 0 1604 186 0 23 chr1 29220502 29220808 -213443545 + AluJb SINE Alu 13 311 -1 382 183 37 0 chr1 29220881 29220963 -213443390 - MER69 DNA AcHobo -3 2523 2439 2394 74 0 0 chr1 29220963 29221260 -213443093 + AluSx SINE Alu 1 297 -15 1944 116 7 0 chr1 29221278 29221553 -213442800 + AluSq SINE Alu 1 277 -36 1113 38 0 0 chr1 29221560 29221692 -213442661 - AluY SINE Alu -179 132 1 1994 134 10 13 chr1 29221809 29222122 -213442231 - AluJb SINE Alu 0 312 1 448 291 7 26 chr1 29222297 29222448 -213441905 - MIR3 SINE MIR -50 158 11 2387 91 0 0 chr1 29222634 29222942 -213441411 - AluSg SINE Alu -2 308 1 293 232 95 11 chr1 29222944 29223039 -213441314 + L2 LINE L2 3211 3313 0 220 213 0 0 chr1 29223502 29223549 -213440804 + MIR SINE MIR 83 129 -79 1552 189 38 0 chr1 29223552 29223843 -213440510 - AluJb SINE Alu -10 302 1 2462 77 0 0 chr1 29223855 29224166 -213440187 - AluSx SINE Alu -1 311 1 2243 63 0 7 chr1 29224201 29224520 -213439833 - AluSc SINE Alu 0 317 1 195 42 0 0 chr1 29225180 29225204 -213439149 + (TG)n Simple_repeat Simple_repeat 1 24 0 1712 146 3 10 chr1 29225254 29225549 -213438804 + AluJb SINE Alu 2 294 -18 4098 132 37 64 chr1 29225555 29225897 -213438456 - L1MA4A LINE L1 -25 6278 5928 1801 103 0 12 chr1 29225897 29226150 -213438203 - AluSx SINE Alu -62 250 1 4098 132 37 64 chr1 29226150 29226523 -213437830 - L1MA4A LINE L1 -375 5928 5530 2086 119 0 0 chr1 29226523 29226817 -213437536 + AluSx SINE Alu 1 294 -18 4098 132 37 64 chr1 29226817 29227023 -213437330 - L1MA4A LINE L1 -773 5530 5320 933 140 5 85 chr1 29227023 29227036 -213437317 - AluJo/FRAM SINE Alu 0 312 300 2207 108 0 3 chr1 29227036 29227343 -213437010 - AluSq SINE Alu -1 312 7 1982 113 0 53 chr1 29227351 29227670 -213436683 - AluSx SINE Alu -10 302 1 933 140 5 85 chr1 29227670 29227847 -213436506 - AluJo/FRAM SINE Alu -19 293 129 2158 92 3 0 chr1 29227853 29228192 -213436161 - AluSp SINE Alu 0 340 1 396 0 0 0 chr1 29228366 29228410 -213435943 + (GA)n Simple_repeat Simple_repeat 2 45 0 217 244 44 67 chr1 29228833 29228880 -213435473 - MIR SINE MIR -70 192 146 2239 87 13 3 chr1 29228880 29229190 -213435163 - AluSp SINE Alu 0 313 1 217 244 44 67 chr1 29229190 29229232 -213435121 - MIR SINE MIR -116 146 105 2031 102 7 3 chr1 29229289 29229583 -213434770 + AluSx SINE Alu 1 295 -17 255 61 0 0 chr1 29229636 29229669 -213434684 + (CA)n Simple_repeat Simple_repeat 1 33 0 2253 82 7 0 chr1 29230469 29230762 -213433591 - AluSg1 SINE Alu -14 295 1 233 273 122 58 chr1 29231192 29231331 -213433022 - MIR3 SINE MIR -28 180 33 2239 89 30 0 chr1 29231639 29231942 -213432411 + AluSx SINE Alu 1 312 0 197 135 0 54 chr1 29232008 29232045 -213432308 - MIR SINE MIR -14 248 214 180 255 21 0 chr1 29232086 29232133 -213432220 - L2 LINE L2 -61 3252 3205 191 279 162 18 chr1 29232143 29232254 -213432099 - MIR SINE MIR -77 185 59 663 214 31 35 chr1 29232486 29232689 -213431664 + MIR SINE MIR 16 223 -39 2261 105 0 0 chr1 29233317 29233622 -213430731 - AluSg SINE Alu -5 305 1 193 260 20 0 chr1 29233700 29233750 -213430603 - L2 LINE L2 -12 3260 3210 264 229 43 29 chr1 29233790 29233860 -213430493 - MIR SINE MIR -96 112 42 387 233 75 33 chr1 29233883 29234003 -213430350 - MIR3 SINE MIR -39 169 45 329 296 32 0 chr1 29234087 29234212 -213430141 + L2 LINE L2 1966 2094 -1220 344 189 165 6 chr1 29234362 29234482 -213429871 - MIR SINE MIR -12 250 105 1494 151 0 94 chr1 29234540 29234677 -213429676 + AluJo SINE Alu 1 149 -163 2102 107 3 13 chr1 29234677 29234987 -213429366 + AluSx SINE Alu 1 307 -5 1494 151 0 94 chr1 29234987 29235180 -213429173 + AluJo SINE Alu 149 300 -12 530 291 84 24 chr1 29235535 29235748 -213428605 + MIR SINE MIR 23 248 -14 253 315 139 79 chr1 29235754 29236122 -213428231 + L2 LINE L2 2869 3258 -14 195 196 43 0 chr1 29236313 29236359 -213427994 + L2 LINE L2 3018 3065 -207 232 245 0 0 chr1 29237863 29237912 -213426441 + CT-rich Low_complexity Low_complexity 1 49 0 1713 131 28 3 chr1 29237913 29238195 -213426158 - AluJo SINE Alu -23 289 1 211 387 14 7 chr1 29239544 29239686 -213424667 + L2 LINE L2 2922 3064 -208 341 301 128 20 chr1 29239810 29239965 -213424388 + MIR SINE MIR 28 210 -52 2274 88 0 19 chr1 29239965 29240282 -213424071 + AluY SINE Alu 1 311 0 341 301 128 20 chr1 29240282 29240322 -213424031 + MIR SINE MIR 210 244 -18 1959 150 3 0 chr1 29240438 29240745 -213423608 + AluJb SINE Alu 1 308 -4 360 325 152 0 chr1 29240761 29240952 -213423401 + L3 LINE CR1 1345 1564 -13 249 280 200 0 chr1 29241022 29241122 -213423231 - MIR3 SINE MIR -12 196 77 362 314 36 15 chr1 29241407 29241544 -213422809 + MIR3 SINE MIR 15 154 -54 384 230 317 45 chr1 29241725 29241802 -213422551 + MLT1J2 LTR MaLR 61 116 -330 2168 114 3 0 chr1 29241802 29242099 -213422254 - AluSx SINE Alu -14 298 1 384 230 317 45 chr1 29242099 29242308 -213422045 + MLT1J2 LTR MaLR 116 425 -21 203 276 0 122 chr1 29243282 29243336 -213421017 - MIR SINE MIR -85 123 85 2174 123 0 0 chr1 29243336 29243637 -213420716 + AluSq SINE Alu 1 301 -12 203 276 0 122 chr1 29243637 29243680 -213420673 - MIR SINE MIR -123 85 38 2572 32 0 6 chr1 29243768 29244081 -213420272 + AluY SINE Alu 1 311 0 2197 86 0 17 chr1 29244087 29244389 -213419964 + AluSc SINE Alu 1 297 -12 1499 178 32 23 chr1 29244394 29244516 -213419837 + AluJb SINE Alu 1 120 -192 204 40 0 0 chr1 29244516 29244541 -213419812 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1499 178 32 23 chr1 29244541 29244727 -213419626 + AluJb SINE Alu 120 312 0 592 282 31 31 chr1 29244802 29244997 -213419356 + MIR SINE MIR 48 242 -20 515 275 42 36 chr1 29245667 29245711 -213418642 - MIR3 SINE MIR -8 200 158 438 286 15 61 chr1 29245711 29245907 -213418446 + MER5A DNA MER1_type 2 188 -1 515 275 42 36 chr1 29245907 29246055 -213418298 - MIR3 SINE MIR -50 158 7 1312 251 91 42 chr1 29246687 29247232 -213417121 + L2 LINE L2 2709 3287 -26 2198 99 3 0 chr1 29247232 29247524 -213416829 + AluSg SINE Alu 1 293 -17 1560 168 21 7 chr1 29247661 29247947 -213416406 + AluJo SINE Alu 1 290 -22 1969 138 20 0 chr1 29248141 29248445 -213415908 + AluJb SINE Alu 1 310 -2 718 242 39 35 chr1 29248445 29248676 -213415677 - HAL1 LINE L1 0 2507 2276 440 275 206 13 chr1 29248803 29249036 -213415317 - MLT1J2 LTR MaLR -153 297 20 2119 127 0 6 chr1 29249162 29249476 -213414877 + AluSq SINE Alu 1 312 -1 1024 181 0 0 chr1 29249498 29249658 -213414695 - FAM SINE Alu -15 160 1 2437 267 61 74 chr1 29249658 29249986 -213414367 - HAL1 LINE L1 -314 2193 1862 2397 71 3 0 chr1 29249986 29250296 -213414057 - AluY SINE Alu 0 311 1 2245 61 57 0 chr1 29250296 29250592 -213413761 - AluSp SINE Alu 0 313 1 2437 267 61 74 chr1 29250592 29251348 -213413005 - HAL1 LINE L1 -644 1863 1099 1415 183 21 21 chr1 29251348 29251559 -213412794 - AluJo SINE Alu 0 334 121 2176 99 3 0 chr1 29251559 29251853 -213412500 + AluSp SINE Alu 1 295 -18 1415 183 21 21 chr1 29251853 29251975 -213412378 - AluJo SINE Alu -212 122 1 2437 267 61 74 chr1 29251975 29252002 -213412351 - HAL1 LINE L1 -1408 1099 1073 2401 62 0 3 chr1 29252002 29252306 -213412047 + AluY SINE Alu 1 303 -8 2437 267 61 74 chr1 29252306 29252621 -213411732 - HAL1 LINE L1 -1434 1073 782 321 186 0 0 chr1 29252624 29252694 -213411659 + (TG)n Simple_repeat Simple_repeat 2 71 0 690 294 54 75 chr1 29252704 29252942 -213411411 - HAL1 LINE L1 -1730 777 553 905 92 0 8 chr1 29252942 29253061 -213411292 - FLAM_C SINE Alu -15 118 1 690 294 54 75 chr1 29253061 29253305 -213411048 - HAL1 LINE L1 -1954 553 305 400 250 18 18 chr1 29253328 29253440 -213410913 - MIR SINE MIR -103 159 48 297 289 68 105 chr1 29253544 29253838 -213410515 - L2 LINE L2 -2 3311 3029 392 155 56 0 chr1 29253838 29253909 -213410444 + MLT1A2 LTR MaLR 1 75 -299 1998 104 10 7 chr1 29253925 29254214 -213410139 - AluSg SINE Alu -19 291 2 1800 157 11 0 chr1 29254320 29254630 -213409723 - AluJb SINE Alu 0 313 1 2132 107 0 0 chr1 29254830 29255121 -213409232 + AluSq SINE Alu 1 291 -22 186 55 164 0 chr1 29255123 29255178 -213409175 + GA-rich Low_complexity Low_complexity 1 64 0 1063 83 17 17 chr1 29255180 29255360 -213408993 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 726 181 38 127 chr1 29255403 29255470 -213408883 + MLT1A2 LTR MaLR 124 195 -233 1943 89 0 0 chr1 29255470 29255729 -213408624 - AluSx SINE Alu -1 311 53 726 181 38 127 chr1 29255729 29255924 -213408429 + MLT1A2 LTR MaLR 195 415 -13 826 323 40 18 chr1 29255940 29256308 -213408045 - L2 LINE L2 -263 3009 2632 716 179 43 0 chr1 29256407 29256547 -213407806 + L1MB3 LINE L1 4948 5093 -1053 317 216 0 57 chr1 29256598 29256686 -213407667 + L1MB3 LINE L1 5071 5153 -993 1958 112 34 17 chr1 29256686 29256980 -213407373 - AluSx SINE Alu -13 299 1 1104 79 0 0 chr1 29256980 29257119 -213407234 - AluSg SINE Alu -171 139 1 2586 176 57 13 chr1 29257119 29257158 -213407195 + L1MB3 LINE L1 5143 5179 -1004 1831 123 0 25 chr1 29257158 29257442 -213406911 + AluSx SINE Alu 23 299 -13 2586 176 57 13 chr1 29257442 29257591 -213406762 + L1MB3 LINE L1 5179 5320 -863 1925 158 0 0 chr1 29257591 29257876 -213406477 + AluJb SINE Alu 1 285 -27 2586 176 57 13 chr1 29257876 29258354 -213405999 + L1MB3 LINE L1 5320 5829 -354 1187 137 15 10 chr1 29258361 29258558 -213405795 + AluJb SINE Alu 100 297 -15 2218 152 14 0 chr1 29258559 29258921 -213405432 + L1MB3 LINE L1 5815 6181 -2 311 306 19 9 chr1 29258994 29259102 -213405251 + MIR SINE MIR 53 161 -101 1017 164 16 38 chr1 29259213 29259396 -213404957 - AluJo SINE Alu -133 179 1 1978 147 3 0 chr1 29259853 29260159 -213404194 + AluJb SINE Alu 1 307 -5 1992 121 3 33 chr1 29260159 29260503 -213403850 + AluSx SINE Alu 1 335 0 267 287 139 16 chr1 29260652 29260774 -213403579 - MIR SINE MIR -113 149 13 479 219 176 48 chr1 29261172 29261233 -213403120 - MIR SINE MIR -4 258 206 2157 120 3 0 chr1 29261233 29261542 -213402811 - AluSx SINE Alu -2 310 1 479 219 176 48 chr1 29261542 29261667 -213402686 - MIR SINE MIR -56 206 48 933 143 0 0 chr1 29261771 29261911 -213402442 + FRAM SINE Alu 8 147 -29 396 333 0 0 chr1 29261917 29262034 -213402319 + L2 LINE L2 3156 3272 0 293 274 51 51 chr1 29262034 29262151 -213402202 + L2 LINE L2 3128 3244 -28 256 260 13 26 chr1 29262241 29262318 -213402035 + CT-rich Low_complexity Low_complexity 2 77 0 1095 228 95 26 chr1 29262769 29263116 -213401237 + MLT1C LTR MaLR 94 464 -3 912 163 7 13 chr1 29263131 29263284 -213401069 + FAM SINE Alu 1 40 -9 584 330 19 10 chr1 29263297 29263506 -213400847 + MIR SINE MIR 20 230 -32 391 240 0 66 chr1 29263657 29263778 -213400575 - MIR3 SINE MIR -14 194 82 278 232 85 12 chr1 29264107 29264189 -213400164 - MIR SINE MIR -56 206 119 722 149 130 7 chr1 29264205 29264359 -213399994 + MLT1C LTR MaLR 6 178 -289 688 161 59 0 chr1 29264361 29264479 -213399874 + AluJb SINE Alu 1 125 -187 2365 113 0 0 chr1 29264505 29264814 -213399539 - AluSc SINE Alu 0 309 1 3306 92 8 44 chr1 29264820 29265322 -213399031 + MER1A DNA MER1_type 46 529 0 627 176 206 0 chr1 29265323 29265459 -213398894 + AluJb SINE Alu 126 289 -23 883 205 118 31 chr1 29265467 29265656 -213398697 + MLT1C LTR MaLR 187 405 -62 2399 79 14 0 chr1 29265656 29265948 -213398405 - AluSg SINE Alu -14 296 1 883 205 118 31 chr1 29265948 29266012 -213398341 + MLT1C LTR MaLR 405 462 -5 705 285 21 25 chr1 29266161 29266403 -213397950 - MIR SINE MIR -10 252 12 221 222 0 0 chr1 29266426 29266471 -213397882 - MIR3 SINE MIR -49 159 115 2085 157 3 0 chr1 29267506 29267812 -213396541 + AluJb SINE Alu 5 311 -1 2241 78 0 0 chr1 29267970 29268238 -213396115 + AluSq SINE Alu 1 268 -45 518 299 32 41 chr1 29268290 29268485 -213395868 - MIR SINE MIR -29 233 39 1439 175 138 20 chr1 29268485 29268839 -213395514 + MLT2C1 LTR ERVL 2 397 0 518 299 32 41 chr1 29268839 29268864 -213395489 - MIR SINE MIR -223 39 15 523 256 7 7 chr1 29268949 29269086 -213395267 + MIR SINE MIR 71 207 -55 322 281 89 62 chr1 29269322 29269546 -213394807 - MIR SINE MIR -28 234 5 1886 150 3 39 chr1 29269552 29269858 -213394495 - AluJo SINE Alu -17 295 1 23 0 0 0 chr1 29269929 29269952 -213394401 + AT_rich Low_complexity Low_complexity 1 23 0 747 262 25 5 chr1 29270111 29270313 -213394040 + MIR SINE MIR 28 233 -29 1654 129 30 0 chr1 29270344 29270576 -213393777 + AluJb SINE Alu 1 239 -73 2345 85 3 3 chr1 29270658 29270952 -213393401 - AluSc SINE Alu -15 294 1 251 114 0 0 chr1 29271332 29271376 -213392977 + L2 LINE L2 2934 2977 -336 12138 101 143 33 chr1 29271430 29271626 -213392727 + Tigger1 DNA MER2_type 20 193 -2225 1847 149 10 7 chr1 29271626 29271940 -213392413 - AluJb SINE Alu 0 315 1 12138 101 143 33 chr1 29271940 29272173 -213392180 + Tigger1 DNA MER2_type 193 399 -2019 1945 155 7 3 chr1 29272173 29272476 -213391877 + AluJo SINE Alu 1 304 -8 12138 101 143 33 chr1 29272476 29272513 -213391840 + Tigger1 DNA MER2_type 399 431 -1987 2443 93 3 3 chr1 29272513 29272825 -213391528 + AluSx SINE Alu 1 312 0 12138 101 143 33 chr1 29272825 29273177 -213391176 + Tigger1 DNA MER2_type 431 743 -1675 2478 88 0 0 chr1 29273177 29273474 -213390879 - AluSx SINE Alu -15 297 1 966 168 6 12 chr1 29273474 29273641 -213390712 - FRAM SINE Alu 0 166 1 12138 101 143 33 chr1 29273641 29274146 -213390207 + Tigger1 DNA MER2_type 743 1191 -1227 1723 157 26 42 chr1 29274146 29274459 -213389894 + AluJo SINE Alu 1 308 -4 12138 101 143 33 chr1 29274459 29274688 -213389665 + Tigger1 DNA MER2_type 1191 1394 -1024 948 164 61 0 chr1 29274688 29274853 -213389500 + FAM SINE Alu 1 175 0 2080 149 0 3 chr1 29274861 29275169 -213389184 - AluJb SINE Alu -5 307 1 12138 101 143 33 chr1 29275169 29275646 -213388707 + Tigger1 DNA MER2_type 1400 1823 -595 1961 142 27 3 chr1 29275646 29275941 -213388412 - AluJb SINE Alu -10 302 1 12138 101 143 33 chr1 29275941 29276056 -213388297 + Tigger1 DNA MER2_type 1823 2418 0 500 198 54 0 chr1 29276131 29276242 -213388111 + L2 LINE L2 3158 3274 -39 289 229 174 18 chr1 29276252 29276361 -213387992 - MIR SINE MIR -87 175 50 2390 93 0 0 chr1 29276498 29276789 -213387564 + AluSg SINE Alu 1 291 -19 274 277 122 47 chr1 29276863 29277011 -213387342 + MIR3 SINE MIR 14 172 -36 610 284 38 38 chr1 29277026 29277048 -213387305 + MIR SINE MIR 13 34 -228 2404 72 0 10 chr1 29277048 29277341 -213387012 + AluY SINE Alu 1 290 -21 610 284 38 38 chr1 29277341 29277554 -213386799 + MIR SINE MIR 33 248 -14 2465 70 3 16 chr1 29277564 29277879 -213386474 + AluY SINE Alu 1 311 0 2303 113 0 3 chr1 29277984 29278286 -213386067 - AluSx SINE Alu -11 301 1 2286 110 3 10 chr1 29278353 29278488 -213385865 + AluSx SINE Alu 1 135 -177 2271 89 3 17 chr1 29278488 29278819 -213385534 + AluSg SINE Alu 1 310 0 2286 110 3 10 chr1 29278819 29278991 -213385362 + AluSx SINE Alu 135 306 -6 2044 113 0 31 chr1 29279412 29279684 -213384669 + AluSx SINE Alu 21 285 -27 237 65 0 0 chr1 29279684 29279715 -213384638 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 2044 113 0 31 chr1 29279715 29279735 -213384618 + AluSx SINE Alu 285 304 -8 413 255 20 0 chr1 29279812 29279914 -213384439 - L3 LINE CR1 -98 1479 1376 264 263 105 94 chr1 29279914 29279933 -213384420 + L1ME4a LINE L1 5650 5667 -454 2395 76 10 0 chr1 29279933 29280236 -213384117 + AluSp SINE Alu 1 306 -7 264 263 105 94 chr1 29280236 29280294 -213384059 + L1ME4a LINE L1 5667 5723 -398 829 148 0 0 chr1 29280294 29280422 -213383931 - FLAM_C SINE Alu -3 130 3 264 263 105 94 chr1 29280422 29280645 -213383708 + L1ME4a LINE L1 5723 5942 -179 772 150 0 8 chr1 29280645 29280772 -213383581 + AluJo/FLAM SINE Alu 2 127 -175 2278 119 0 16 chr1 29280774 29281092 -213383261 + AluSq SINE Alu 1 313 0 264 263 105 94 chr1 29281092 29281253 -213383100 + L1ME4a LINE L1 5942 6121 0 539 78 0 13 chr1 29281282 29281359 -213382994 + AluS SINE Alu 2 77 -235 1629 173 40 14 chr1 29281359 29281637 -213382716 - AluJo SINE Alu -27 285 1 2248 104 7 0 chr1 29281701 29281988 -213382365 + AluSx SINE Alu 15 303 -9 710 266 38 30 chr1 29282075 29282312 -213382041 - MIR SINE MIR -11 251 13 323 255 91 44 chr1 29282440 29282607 -213381746 + MIR SINE MIR 16 189 -63 398 233 252 0 chr1 29282883 29282986 -213381367 - FLAM_A SINE Alu -4 129 1 181 329 31 62 chr1 29283630 29283791 -213380562 + L2 LINE L2 2929 3084 -188 252 274 137 33 chr1 29284068 29284162 -213380191 - MIR SINE MIR -34 228 145 2179 82 3 49 chr1 29284162 29284467 -213379886 + AluSx SINE Alu 1 291 -21 252 274 137 33 chr1 29284467 29284525 -213379828 - MIR SINE MIR -117 145 60 401 272 95 27 chr1 29284861 29285008 -213379345 - MIR SINE MIR -52 210 54 364 260 166 6 chr1 29286136 29286305 -213378048 - MIR SINE MIR -60 202 7 1752 147 50 4 chr1 29286777 29287056 -213377297 + AluJb SINE Alu 1 292 -20 272 252 44 124 chr1 29287139 29287315 -213377038 + MIR3 SINE MIR 30 189 -28 681 258 35 5 chr1 29287795 29287993 -213376360 - MIR SINE MIR -23 239 36 32 43 0 0 chr1 29289881 29289927 -213374426 + GC_rich Low_complexity Low_complexity 1 46 0 721 272 0 35 chr1 29290225 29290453 -213373900 + MIR SINE MIR 30 249 -13 379 329 100 42 chr1 29290485 29290795 -213373558 - L2 LINE L2 0 3272 2945 274 198 189 38 chr1 29291013 29291119 -213373234 - MIR SINE MIR -10 252 131 217 292 15 0 chr1 29291204 29291269 -213373084 + L2 LINE L2 3247 3312 -1 447 325 59 0 chr1 29291703 29291872 -213372481 + L2 LINE L2 2882 3060 -212 687 187 0 7 chr1 29292010 29292149 -213372204 + L1PA16 LINE L1 6022 6159 -7 1631 175 6 60 chr1 29292149 29292483 -213371870 + AluJb SINE Alu 1 312 0 2176 102 0 54 chr1 29292640 29292955 -213371398 + AluSq SINE Alu 1 298 -15 2237 125 6 3 chr1 29293020 29293331 -213371022 + AluSx SINE Alu 1 312 0 2330 91 0 23 chr1 29293463 29293771 -213370582 - AluSc SINE Alu -8 301 1 747 133 31 8 chr1 29293781 29293909 -213370444 - FLAM_C SINE Alu 0 133 3 449 266 227 20 chr1 29293985 29294188 -213370165 - MIR SINE MIR -12 250 6 2324 75 7 0 chr1 29294312 29294640 -213369713 - AluSp SINE Alu 0 330 1 2293 97 0 0 chr1 29295100 29295412 -213368941 + AluSx SINE Alu 1 312 0 640 289 32 32 chr1 29295550 29295731 -213368622 + L2 LINE L2 2414 2597 -717 2088 123 3 0 chr1 29295731 29296016 -213368337 - AluSx SINE Alu -6 306 21 640 289 32 32 chr1 29296016 29296087 -213368266 + L2 LINE L2 2596 2666 -648 398 238 126 28 chr1 29296247 29296390 -213367963 + MIR SINE MIR 13 169 -93 774 90 0 0 chr1 29296719 29296819 -213367534 + THE1B LTR MaLR 5 104 -260 1104 62 0 0 chr1 29296819 29296948 -213367405 - AluY SINE Alu -182 129 1 305 95 0 0 chr1 29296948 29296990 -213367363 + THE1A LTR MaLR 314 355 0 257 309 56 43 chr1 29297531 29297693 -213366660 + MLT1L LTR MaLR 6 169 -446 1793 194 121 50 chr1 29297693 29298189 -213366164 + MLT1H LTR MaLR 1 531 -18 927 243 171 35 chr1 29298217 29298527 -213365826 + MLT1L LTR MaLR 183 554 -61 2279 113 0 0 chr1 29298527 29298820 -213365533 + AluSx SINE Alu 1 293 -19 927 243 171 35 chr1 29298820 29298883 -213365470 + MLT1L LTR MaLR 554 607 -8 376 280 76 81 chr1 29299016 29299132 -213365221 + MIR SINE MIR 40 156 -106 1519 173 0 12 chr1 29299132 29299381 -213364972 + AluJo SINE Alu 16 261 -51 376 280 76 81 chr1 29299381 29299475 -213364878 + MIR SINE MIR 156 249 -13 2221 92 0 67 chr1 29300637 29300951 -213363402 + AluSx SINE Alu 1 293 -19 541 248 7 15 chr1 29300965 29301102 -213363251 - MIR3 SINE MIR -39 169 34 320 306 30 22 chr1 29301148 29301282 -213363071 - MIR SINE MIR -25 237 103 252 241 17 0 chr1 29301342 29301400 -213362953 + MIR3 SINE MIR 114 172 -36 1816 184 0 0 chr1 29301893 29302186 -213362167 - AluJo SINE Alu -19 293 1 1640 161 19 47 chr1 29302186 29302450 -213361903 + MLT2D LTR ERVL 100 355 -59 2299 104 0 0 chr1 29302450 29302747 -213361606 + AluY SINE Alu 1 297 -14 1640 161 19 47 chr1 29302747 29302804 -213361549 + MLT2D LTR ERVL 355 412 -2 295 289 19 39 chr1 29302814 29302918 -213361435 - L2 LINE L2 -50 3263 3162 2151 127 0 3 chr1 29303705 29303996 -213360357 + AluSx SINE Alu 1 290 -22 2441 91 3 0 chr1 29304084 29304392 -213359961 - AluSp SINE Alu -4 309 1 2230 97 17 3 chr1 29305973 29306262 -213358091 + AluSx SINE Alu 2 294 -18 2235 133 0 0 chr1 29306547 29306855 -213357498 - AluSx SINE Alu -3 309 2 1991 141 7 3 chr1 29307048 29307345 -213357008 + AluJb SINE Alu 1 298 -14 38 85 0 0 chr1 29307358 29307452 -213356901 + AT_rich Low_complexity Low_complexity 1 94 0 2237 135 0 0 chr1 29308361 29308658 -213355695 + AluSx SINE Alu 1 297 -15 449 273 28 7 chr1 29308752 29308895 -213355458 + LTR67 LTR ERVL 411 556 -1 1799 134 78 0 chr1 29309372 29309655 -213354698 - AluJo SINE Alu -7 305 1 1352 191 35 11 chr1 29309655 29309937 -213354416 + L1ME3 LINE L1 5858 6146 -16 1742 144 12 0 chr1 29309937 29310194 -213354159 + AluJb SINE Alu 38 297 -15 2301 103 7 3 chr1 29310216 29310517 -213353836 - AluSx SINE Alu -10 302 1 2330 110 3 0 chr1 29310739 29311049 -213353304 - AluSp SINE Alu -2 311 1 285 296 143 67 chr1 29311098 29311321 -213353032 - MIR SINE MIR -11 251 12 232 309 100 9 chr1 29311432 29311542 -213352811 - MIR SINE MIR -71 137 18 2303 108 0 3 chr1 29311685 29311990 -213352363 + AluSx SINE Alu 1 304 -8 327 339 123 31 chr1 29312113 29312464 -213351889 - L2 LINE L2 0 3272 2890 229 231 154 22 chr1 29312441 29312532 -213351821 + L2 LINE L2 3197 3299 -14 * 273 75 0 0 chr1 29312538 29312578 -213351775 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 579 319 208 31 chr1 29312586 29312690 -213351663 - L2 LINE L2 -433 2881 2797 2455 74 3 3 chr1 29312690 29312987 -213351366 - AluSp SINE Alu -15 298 2 579 319 208 31 chr1 29312987 29313631 -213350722 - L2 LINE L2 -517 2797 2000 293 269 99 23 chr1 29314353 29314524 -213349829 - L1ME LINE L1 -261 5860 5677 2096 57 40 27 chr1 29314749 29315046 -213349307 - AluY SINE Alu -2 309 9 2211 105 7 0 chr1 29315557 29315863 -213348490 - AluSq SINE Alu -5 308 1 201 320 244 5 chr1 29315875 29316072 -213348281 + L3 LINE CR1 1289 1532 -45 21 71 0 0 chr1 29316303 29316345 -213348008 + AT_rich Low_complexity Low_complexity 1 42 0 1873 153 7 0 chr1 29316385 29316685 -213347668 + AluSx SINE Alu 1 302 -10 1087 99 13 0 chr1 29316686 29316838 -213347515 + AluSg/x SINE Alu 137 290 -22 180 179 0 0 chr1 29317508 29317536 -213346817 + L2 LINE L2 3258 3285 -28 325 240 150 0 chr1 29317566 29317666 -213346687 - MIR SINE MIR -115 147 33 989 167 167 83 chr1 29317777 29317868 -213346485 - MER63 DNA MER1_type -208 853 771 1876 120 27 17 chr1 29317868 29318168 -213346185 - AluSg SINE Alu -7 303 1 989 167 167 83 chr1 29318168 29318341 -213346012 - MER63 DNA MER1_type -290 771 553 1661 160 10 10 chr1 29318341 29318629 -213345724 + AluJo SINE Alu 7 294 -18 989 167 167 83 chr1 29318629 29318699 -213345654 - MER63 DNA MER1_type -508 553 490 1451 159 10 92 chr1 29318813 29319127 -213345226 + AluJb SINE Alu 1 288 -24 2217 103 0 3 chr1 29319271 29319581 -213344772 - AluSx SINE Alu -3 309 1 288 307 157 0 chr1 29319670 29319810 -213344543 - MIR SINE MIR -10 252 91 1914 122 0 7 chr1 29319820 29320114 -213344239 + AluSx SINE Alu 1 292 -20 1791 112 72 0 chr1 29320116 29320394 -213343959 + AluSq SINE Alu 1 298 -15 863 130 80 49 chr1 29320394 29320556 -213343797 + AluSg/x SINE Alu 134 300 -12 191 281 47 94 chr1 29320557 29320685 -213343668 - L2 LINE L2 -662 2652 2531 206 171 139 108 chr1 29320708 29320837 -213343516 - L2 LINE L2 -916 2398 2266 479 292 56 52 chr1 29320919 29321152 -213343201 - MIR SINE MIR 0 262 29 1107 164 103 0 chr1 29321287 29321501 -213342852 + MER46A DNA MER2_type 1 236 0 225 0 0 0 chr1 29322359 29322384 -213341969 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 321 300 94 38 chr1 29323267 29323427 -213340926 - L1ME4a LINE L1 -45 6076 5908 198 321 223 23 chr1 29323450 29323665 -213340688 - MIR SINE MIR 0 262 5 1097 189 161 0 chr1 29323693 29323942 -213340411 + AluJo SINE Alu 1 289 -23 202 250 29 88 chr1 29324273 29324341 -213340012 - MIR SINE MIR -114 94 30 198 270 54 40 chr1 29324474 29324548 -213339805 - MER5B DNA MER1_type -23 155 81 370 280 56 0 chr1 29324654 29324761 -213339592 + MER5A DNA MER1_type 69 181 -8 1656 124 71 4 chr1 29324974 29325240 -213339113 - Tigger3b DNA MER2_type 0 1231 948 2043 122 0 3 chr1 29325243 29325546 -213338807 + AluSx SINE Alu 1 302 -10 2752 157 82 6 chr1 29325547 29325841 -213338512 - Tigger3b DNA MER2_type -2461 567 297 306 0 0 0 chr1 29325841 29325875 -213338478 + (TG)n Simple_repeat Simple_repeat 1 34 0 1923 92 26 4 chr1 29325875 29326147 -213338206 - AluY SINE Alu -33 278 1 1955 126 3 10 chr1 29326147 29326439 -213337914 - AluSx SINE Alu -21 291 1 2752 157 82 6 chr1 29326439 29326666 -213337687 - Tigger3b DNA MER2_type -2730 298 4 198 0 0 0 chr1 29326666 29326688 -213337665 + (TG)n Simple_repeat Simple_repeat 2 23 0 1529 177 19 29 chr1 29326689 29326999 -213337354 - AluJb SINE Alu -5 307 1 423 202 158 9 chr1 29327010 29327021 -213337332 - AluJo SINE Alu -177 135 127 2035 80 22 4 chr1 29327021 29327297 -213337056 + AluSp SINE Alu 6 286 -27 423 202 158 9 chr1 29327297 29327399 -213336954 - AluJo SINE Alu -185 127 5 22 0 0 0 chr1 29327406 29327428 -213336925 + AT_rich Low_complexity Low_complexity 1 22 0 2359 56 0 0 chr1 29327672 29327959 -213336394 + AluY SINE Alu 1 287 -24 185 83 0 0 chr1 29328379 29328403 -213335950 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1796 121 53 14 chr1 29328406 29328688 -213335665 - AluSx SINE Alu -19 293 1 1025 131 6 23 chr1 29328844 29329003 -213335350 - AluSq SINE Alu -21 292 135 2105 112 0 13 chr1 29329003 29329316 -213335037 - AluSc SINE Alu 0 309 1 1025 131 6 23 chr1 29329316 29329331 -213335022 - AluSq SINE Alu -178 135 121 245 114 0 0 chr1 29329365 29329409 -213334944 - L1MA7 LINE L1 -14 6277 6234 312 181 145 12 chr1 29329409 29329492 -213334861 - L1M4 LINE L1 -2927 3219 3126 2264 76 3 16 chr1 29329499 29329815 -213334538 - AluSp SINE Alu -1 312 1 2011 112 6 19 chr1 29329825 29330137 -213334216 - AluSg1 SINE Alu -1 308 1 500 86 14 0 chr1 29330137 29330207 -213334146 - AluSq/x SINE Alu -176 137 67 1044 164 5 15 chr1 29330207 29330408 -213333945 - AluSx SINE Alu -113 199 1 883 147 19 6 chr1 29330422 29330578 -213333775 - FAM SINE Alu -2 47 1 1294 125 121 12 chr1 29330624 29330864 -213333489 - AluJb SINE Alu -46 266 1 1261 174 47 74 chr1 29330998 29331179 -213333174 - AluJo SINE Alu -12 290 119 198 0 0 0 chr1 29331179 29331201 -213333152 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1261 174 47 74 chr1 29331201 29331317 -213333036 - AluJo SINE Alu -183 119 1 981 225 66 38 chr1 29331344 29331664 -213332689 - L1MC4 LINE L1 -94 7948 7620 1267 173 46 59 chr1 29331669 29331975 -213332378 - AluJb SINE Alu -10 302 1 1098 173 117 4 chr1 29332022 29332271 -213332082 - L1MC4 LINE L1 -589 7453 7177 293 109 62 47 chr1 29332272 29332336 -213332017 - L1MC4 LINE L1 -1024 7018 6954 1514 177 3 38 chr1 29332384 29332701 -213331652 - AluJo SINE Alu -6 306 1 2323 63 0 0 chr1 29333044 29333366 -213330987 - AluY SINE Alu 0 322 1 238 274 27 14 chr1 29333442 29333515 -213330838 + MIR SINE MIR 74 147 -115 1656 78 0 5 chr1 29333576 29333795 -213330558 - AluSg/x SINE Alu -10 302 85 1860 105 10 64 chr1 29333891 29334204 -213330149 + AluSx SINE Alu 1 296 -16 181 281 22 45 chr1 29334265 29334354 -213329999 - MIR SINE MIR -115 147 61 2074 96 0 42 chr1 29335411 29335724 -213328629 - AluSq SINE Alu -13 300 1 1882 128 20 7 chr1 29336095 29336400 -213327953 + AluSg SINE Alu 1 309 -1 2641 209 143 15 chr1 29336419 29336532 -213327821 + L1MC4a LINE L1 6795 6892 -921 1148 188 156 0 chr1 29336532 29336782 -213327571 - AluJo SINE Alu -13 289 1 2641 209 143 15 chr1 29336782 29337059 -213327294 + L1MC4a LINE L1 6892 7132 -681 1215 190 122 4 chr1 29337059 29337322 -213327031 + AluJo SINE Alu 2 295 -7 2641 209 143 15 chr1 29337322 29337880 -213326473 + L1MC4a LINE L1 7132 7807 -6 1034 133 19 0 chr1 29337965 29338123 -213326230 - AluSg/x SINE Alu -55 257 97 1905 135 16 13 chr1 29338760 29339071 -213325282 + AluSx SINE Alu 1 312 0 696 84 72 18 chr1 29339102 29339269 -213325084 + GA-rich Low_complexity Low_complexity 4 179 0 221 231 0 0 chr1 29339270 29339309 -213325044 + polypurine Low_complexity Low_complexity 4 42 0 1882 122 35 3 chr1 29339502 29339788 -213324565 - AluSx SINE Alu -17 295 1 195 229 125 0 chr1 29340046 29340094 -213324259 + L2 LINE L2 3258 3311 -2 221 171 0 0 chr1 29340943 29340984 -213323369 + T-rich Low_complexity Low_complexity 1 41 0 24 53 0 0 chr1 29341264 29341302 -213323051 + AT_rich Low_complexity Low_complexity 1 38 0 379 253 227 20 chr1 29341539 29341689 -213322664 + MIR SINE MIR 34 214 -48 1311 76 22 5 chr1 29341893 29342078 -213322275 - AluSg/x SINE Alu -15 297 110 1708 101 4 8 chr1 29342179 29342427 -213321926 - AluY SINE Alu -64 247 1 1687 147 7 23 chr1 29342431 29342738 -213321615 - AluJb SINE Alu 0 312 11 1745 78 109 4 chr1 29342765 29343021 -213321332 - AluSc SINE Alu -26 283 1 1034 83 0 0 chr1 29343021 29343154 -213321199 - AluSc SINE Alu -176 133 1 1272 171 0 0 chr1 29343191 29343402 -213320951 - AluJb SINE Alu -99 213 3 1942 121 24 10 chr1 29343413 29343710 -213320643 - AluSx SINE Alu -11 301 1 1588 139 0 0 chr1 29343721 29343965 -213320388 - AluSq SINE Alu -17 296 53 519 298 140 45 chr1 29344191 29344425 -213319928 + L2 LINE L2 2524 2734 -579 1931 125 63 0 chr1 29344425 29344712 -213319641 - AluSg SINE Alu -5 305 1 519 298 140 45 chr1 29344712 29345131 -213319222 + L2 LINE L2 2734 3299 -14 669 198 0 0 chr1 29345427 29345548 -213318805 + FRAM SINE Alu 1 121 -55 186 43 0 0 chr1 29345565 29345588 -213318765 + (CAA)n Simple_repeat Simple_repeat 2 24 0 189 133 0 0 chr1 29345687 29345717 -213318636 + MIR SINE MIR 110 139 -69 1018 211 5 0 chr1 29345731 29345925 -213318428 - LTR44 LTR ERV1 -3 516 322 2317 79 13 0 chr1 29345930 29346234 -213318119 - AluSp SINE Alu -5 308 1 2036 114 0 3 chr1 29346234 29346531 -213317822 - AluY SINE Alu -15 296 1 562 204 210 0 chr1 29346537 29346713 -213317640 + L2 LINE L2 1295 1507 -1807 528 197 299 14 chr1 29346717 29346864 -213317489 + MER5A DNA MER1_type 1 189 0 2514 250 124 30 chr1 29346868 29346952 -213317401 + L2 LINE L2 1514 1589 -1725 1633 147 39 7 chr1 29346952 29347258 -213317095 + AluJb SINE Alu 1 312 0 2514 250 124 30 chr1 29347258 29347379 -213316974 + L2 LINE L2 1589 1697 -1617 1823 174 7 0 chr1 29347379 29347689 -213316664 - AluJb SINE Alu 0 312 1 2514 250 124 30 chr1 29347689 29348241 -213316112 + L2 LINE L2 1697 2375 -939 2232 92 7 0 chr1 29348241 29348536 -213315817 - AluSx SINE Alu -15 297 1 2514 250 124 30 chr1 29348536 29348696 -213315657 + L2 LINE L2 2375 2519 -795 1950 167 61 63 chr1 29348710 29349170 -213315183 - LTR2B LTR ERV1 0 490 32 927 281 105 16 chr1 29349177 29349693 -213314660 + L2 LINE L2 2557 3110 -203 297 333 92 7 chr1 29349893 29350034 -213314319 + MIR3 SINE MIR 20 172 -36 246 272 22 11 chr1 29350044 29350136 -213314217 + L2 LINE L2 2500 2592 -722 421 70 35 0 chr1 29350142 29350199 -213314154 - AluSg/x SINE Alu -90 222 164 2247 74 7 10 chr1 29350199 29350497 -213313856 - AluY SINE Alu -14 297 1 1375 122 15 0 chr1 29350678 29350883 -213313470 + AluSx SINE Alu 61 268 -44 259 329 37 0 chr1 29351123 29351205 -213313148 + L2 LINE L2 3139 3223 -49 2363 68 0 0 chr1 29351446 29351754 -213312599 + AluY SINE Alu 1 308 -3 218 325 167 8 chr1 29351836 29351962 -213312391 - L2 LINE L2 -182 3090 2945 1055 108 25 0 chr1 29352066 29352256 -213312097 - AluSg/x SINE Alu 0 312 119 1862 121 10 13 chr1 29352380 29352686 -213311667 + AluSx SINE Alu 4 308 -4 225 330 130 9 chr1 29353106 29353221 -213311132 + L3 LINE CR1 1431 1559 -18 1032 108 88 159 chr1 29353267 29353426 -213310927 + MER46B DNA MER2_type 2 171 -2560 2102 82 7 0 chr1 29353426 29353732 -213310621 + AluY SINE Alu 1 308 0 1032 108 88 159 chr1 29353732 29353766 -213310587 + MER46B DNA MER2_type 171 46 -2685 1726 138 50 7 chr1 29353766 29354049 -213310304 + AluSg SINE Alu 1 295 -15 1032 108 88 159 chr1 29354049 29354149 -213310204 + MER46B DNA MER2_type 45 151 -85 2053 132 0 7 chr1 29354258 29354568 -213309785 - AluSx SINE Alu -4 308 1 2192 93 7 0 chr1 29354579 29354880 -213309473 - AluY SINE Alu -5 306 4 1804 282 30 9 chr1 29354919 29355458 -213308895 - L2 LINE L2 -602 2712 2163 1965 143 0 0 chr1 29355502 29355795 -213308558 - AluJb SINE Alu -14 298 6 2096 89 0 0 chr1 29355795 29356065 -213308288 - AluY SINE Alu -40 271 1 1242 114 0 30 chr1 29356068 29356270 -213308083 - AluSq SINE Alu -18 295 100 2109 106 0 7 chr1 29356371 29356664 -213307689 - AluSx SINE Alu -21 291 1 324 0 0 0 chr1 29356878 29356914 -213307439 + (TG)n Simple_repeat Simple_repeat 1 36 0 634 185 68 48 chr1 29356915 29357061 -213307292 - FRAM SINE Alu -30 146 1 1527 170 3 36 chr1 29357071 29357234 -213307119 - AluJo SINE Alu -16 296 146 2080 125 3 0 chr1 29357234 29357530 -213306823 - AluSx SINE Alu -15 297 1 1527 170 3 36 chr1 29357530 29357672 -213306681 - AluJo SINE Alu -166 146 1 231 156 111 0 chr1 29357737 29357782 -213306571 - L2 LINE L2 0 3313 3264 1203 176 5 5 chr1 29357900 29358121 -213306232 + AluJb SINE Alu 82 302 -10 406 150 0 0 chr1 29358150 29358210 -213306143 + AluS SINE Alu 1 60 -242 1856 110 27 0 chr1 29358310 29358573 -213305780 - AluSc SINE Alu -39 270 1 769 184 102 0 chr1 29358576 29358723 -213305630 - FRAM SINE Alu -17 159 1 2049 125 0 16 chr1 29358995 29359308 -213305045 - AluJb SINE Alu -4 308 1 1889 141 7 0 chr1 29359487 29359786 -213304567 + AluSx SINE Alu 2 302 -10 2247 81 0 14 chr1 29360317 29360612 -213303741 + AluSg SINE Alu 2 292 -18 1324 152 65 96 chr1 29360724 29361046 -213303307 + AluSx SINE Alu 1 312 0 502 273 86 36 chr1 29361046 29361266 -213303087 - L2 LINE L2 -93 3220 2990 1866 112 14 27 chr1 29361272 29361568 -213302785 + AluSq SINE Alu 1 292 -21 1975 99 41 7 chr1 29361570 29361863 -213302490 + AluSg SINE Alu 1 303 -7 1676 114 148 19 chr1 29361930 29362194 -213302159 + AluSx SINE Alu 1 298 -4 285 268 0 0 chr1 29362347 29362403 -213301950 - Charlie8 DNA MER1_type -2215 202 147 2205 99 6 16 chr1 29362414 29362727 -213301626 - AluSg SINE Alu 0 310 1 1785 158 3 7 chr1 29362728 29363026 -213301327 - AluJb SINE Alu -15 297 1 259 203 145 0 chr1 29363027 29363096 -213301257 + L1ME LINE L1 5690 5768 -402 2607 36 0 0 chr1 29363117 29363426 -213300927 - AluY SINE Alu -2 309 1 450 48 16 0 chr1 29363535 29363598 -213300755 - LTR9B LTR ERV1 -135 509 446 2171 84 7 0 chr1 29363602 29363925 -213300428 - AluY SINE Alu 0 311 4 1315 167 159 0 chr1 29363947 29364198 -213300155 - AluSx SINE Alu -21 291 1 1737 101 97 0 chr1 29364207 29364503 -213299850 - AluSc SINE Alu 0 321 1 1958 129 3 0 chr1 29364503 29364797 -213299556 - AluSq SINE Alu -18 295 1 2083 92 0 20 chr1 29365122 29365427 -213298926 - AluSp SINE Alu -14 299 1 768 129 0 40 chr1 29365428 29365552 -213298801 + FLAM_C SINE Alu 11 129 -14 205 318 77 125 chr1 29365694 29365774 -213298579 - L2 LINE L2 -8 3264 3182 2038 124 0 3 chr1 29365774 29366072 -213298281 + AluSc SINE Alu 1 297 -12 205 318 77 125 chr1 29366072 29366090 -213298263 - L2 LINE L2 -90 3182 3165 1934 117 33 0 chr1 29366090 29366363 -213297990 + AluSp SINE Alu 1 282 -31 189 0 0 0 chr1 29366366 29366387 -213297966 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 205 318 77 125 chr1 29366387 29366594 -213297759 - L2 LINE L2 -109 3163 2969 730 123 0 0 chr1 29366594 29366700 -213297653 + AluSg/x SINE Alu 187 292 -17 2239 88 0 3 chr1 29367026 29367323 -213297030 - AluSp SINE Alu -17 296 1 181 281 22 45 chr1 29367659 29367748 -213296605 + MIR SINE MIR 61 147 -115 1860 105 10 64 chr1 29367809 29368122 -213296231 - AluSx SINE Alu -16 296 1 1685 73 0 5 chr1 29368218 29368437 -213295916 + AluSg/x SINE Alu 83 300 -10 238 274 27 14 chr1 29368498 29368571 -213295782 - MIR SINE MIR -115 147 74 2298 69 7 0 chr1 29368647 29368953 -213295400 + AluY SINE Alu 1 308 -3 1889 146 0 3 chr1 29369032 29369326 -213295027 + AluJb SINE Alu 1 293 -19 231 91 0 0 chr1 29369850 29369883 -213294470 - L2 LINE L2 -165 3148 3116 804 200 100 42 chr1 29369994 29370254 -213294099 + L2 LINE L2 970 1244 -2070 1135 52 13 19 chr1 29370295 29370450 -213293903 - AluY SINE Alu -16 295 142 181 196 155 93 chr1 29370699 29370777 -213293576 - MIR SINE MIR -79 183 96 1993 123 7 7 chr1 29370777 29371078 -213293275 + AluSx SINE Alu 3 303 -9 181 196 155 93 chr1 29371078 29371096 -213293257 - MIR SINE MIR -166 96 81 727 205 34 39 chr1 29371272 29371477 -213292876 + MER63A DNA MER1_type 4 207 -3 2068 98 9 19 chr1 29371651 29371966 -213292387 - AluSp SINE Alu -1 312 1 1034 185 0 0 chr1 29372440 29372613 -213291740 - FRAM SINE Alu -11 165 1 339 141 0 0 chr1 29372633 29372711 -213291642 - Charlie5 DNA MER1_type -82 2530 2453 2475 57 0 0 chr1 29372719 29373019 -213291334 + AluY SINE Alu 1 300 -11 2037 70 0 4 chr1 29373029 29373288 -213291065 + L1PA8A LINE L1 5845 6102 -29 180 0 0 0 chr1 29373296 29373316 -213291037 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1243 152 0 0 chr1 29373645 29373843 -213290510 - AluSg/x SINE Alu -10 300 103 405 159 0 14 chr1 29373843 29373912 -213290441 + AluS SINE Alu 225 292 -17 473 100 57 0 chr1 29374035 29374105 -213290248 - HERVL LTR ERVL -3940 1714 1641 662 188 7 51 chr1 29374106 29374244 -213290109 + FLAM_C SINE Alu 2 133 0 958 110 7 14 chr1 29374249 29374394 -213289959 + AluSq/x SINE Alu 1 144 -168 2122 122 0 3 chr1 29374394 29374697 -213289656 + AluSq SINE Alu 1 302 -11 1676 173 0 20 chr1 29374700 29374838 -213289515 + AluSx SINE Alu 1 140 -172 1787 141 48 0 chr1 29374838 29375129 -213289224 + AluSx SINE Alu 1 305 -7 1676 173 0 20 chr1 29375129 29375296 -213289057 + AluSx SINE Alu 140 300 -12 2545 141 0 18 chr1 29375315 29375699 -213288654 - HERVL LTR ERVL -4074 1580 1204 1019 140 28 6 chr1 29375706 29375884 -213288469 + AluSg/x SINE Alu 116 297 -15 1694 80 13 4 chr1 29375884 29376110 -213288243 + AluSg SINE Alu 1 228 -82 1018 170 0 49 chr1 29376110 29376334 -213288019 + AluY SINE Alu 94 306 -5 1966 119 0 3 chr1 29376343 29376656 -213287697 + AluSq SINE Alu 1 312 0 1700 185 3 31 chr1 29376657 29377013 -213287340 + L1MB4 LINE L1 5605 5950 -233 1781 142 0 43 chr1 29377014 29377317 -213287036 + AluSx SINE Alu 1 290 -22 299 83 0 0 chr1 29377318 29377366 -213286987 + L1MB4 LINE L1 6133 6180 0 221 244 39 64 chr1 29377493 29377571 -213286782 + MIR SINE MIR 187 262 0 290 220 20 80 chr1 29377571 29377671 -213286682 + LTR44 LTR ERV1 1 94 -425 347 102 0 0 chr1 29377772 29377821 -213286532 + Alu SINE Alu 249 297 -3 419 286 131 99 chr1 29378297 29378419 -213285934 + L2 LINE L2 2207 2324 -990 2345 55 7 0 chr1 29378419 29378710 -213285643 - AluSp SINE Alu -20 293 1 419 286 131 99 chr1 29378710 29379205 -213285148 + L2 LINE L2 2324 2844 -470 486 0 0 0 chr1 29379324 29379378 -213284975 + (TG)n Simple_repeat Simple_repeat 1 54 0 1688 170 3 3 chr1 29379378 29379654 -213284699 - AluJo SINE Alu -28 284 6 367 268 91 72 chr1 29379739 29379948 -213284405 + L2 LINE L2 3099 3311 -2 2102 110 28 0 chr1 29380065 29380356 -213283997 - AluSg SINE Alu -11 299 1 1865 161 0 0 chr1 29380356 29380654 -213283699 - AluJo SINE Alu -14 298 1 2244 103 0 0 chr1 29380732 29381034 -213283319 - AluSg SINE Alu -8 302 1 2334 86 0 0 chr1 29381570 29381874 -213282479 - AluSx SINE Alu -8 304 1 476 254 70 0 chr1 29382561 29382675 -213281678 - L2 LINE L2 -1 3271 3150 1357 214 10 14 chr1 29382703 29382998 -213281355 + AluJo SINE Alu 1 294 -18 504 131 61 0 chr1 29383004 29383103 -213281250 + Charlie4 DNA MER1_type 1824 1928 -33 181 324 56 14 chr1 29383248 29383319 -213281034 - L2 LINE L2 -216 3056 2983 2325 68 10 0 chr1 29384306 29384600 -213279753 + AluSp SINE Alu 1 297 -16 1339 81 0 0 chr1 29385168 29385342 -213279011 + AluY SINE Alu 123 296 -15 985 18 0 0 chr1 29385547 29385660 -213278693 + L1PA5 LINE L1 6038 6150 -4 2201 57 10 29 chr1 29385703 29386055 -213278298 + AluY SINE Alu 1 311 0 2167 80 21 3 chr1 29386103 29386391 -213277962 - AluSq SINE Alu -20 293 1 197 33 33 0 chr1 29386446 29386476 -213277877 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1424 129 7 100 chr1 29386481 29386790 -213277563 - AluJb SINE Alu -29 283 4 731 172 112 18 chr1 29386794 29386963 -213277390 + AluJo SINE Alu 121 305 -7 1825 66 45 63 chr1 29387454 29387598 -213276755 + AluSc SINE Alu 2 147 -162 2146 92 0 0 chr1 29387598 29387905 -213276448 + AluSq SINE Alu 1 307 0 1825 66 45 63 chr1 29387905 29388072 -213276281 + AluSc SINE Alu 147 309 0 22 0 0 0 chr1 29389045 29389067 -213275286 + GC_rich Low_complexity Low_complexity 1 22 0 43 116 0 0 chr1 29389102 29389301 -213275052 + GC_rich Low_complexity Low_complexity 1 199 0 2219 89 3 0 chr1 29389421 29389712 -213274641 + AluSp SINE Alu 1 292 -21 21747 86 4 15 chr1 29389713 29390264 -213274089 + HERVL LTR ERVL 1722 2277 -3377 2064 123 0 3 chr1 29390264 29390565 -213273788 + AluSq SINE Alu 1 300 -13 21747 86 4 15 chr1 29390565 29392333 -213272020 + HERVL LTR ERVL 2277 4008 -1646 2217 93 0 7 chr1 29392333 29392634 -213271719 - AluSc SINE Alu -10 299 1 21747 86 4 15 chr1 29392634 29393164 -213271189 + HERVL LTR ERVL 4008 4542 -1112 21 0 0 0 chr1 29393269 29393290 -213271063 + AT_rich Low_complexity Low_complexity 1 21 0 213 65 0 0 chr1 29393832 29393863 -213270490 + (T)n Simple_repeat Simple_repeat 1 31 0 215 300 57 0 chr1 29394194 29394282 -213270071 + MIR SINE MIR 32 123 -85 23 0 0 0 chr1 29394309 29394332 -213270021 + AT_rich Low_complexity Low_complexity 1 23 0 2148 112 3 0 chr1 29394337 29394640 -213269713 + AluSq SINE Alu 1 304 -9 2138 110 0 23 chr1 29394649 29394958 -213269395 + AluSx SINE Alu 3 304 -8 327 330 0 0 chr1 29394967 29395058 -213269295 + MIR SINE MIR 151 241 -21 423 0 0 0 chr1 29395443 29395490 -213268863 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 803 105 0 0 chr1 29395541 29395646 -213268707 + AluJb SINE Alu 5 109 -203 1035 173 48 10 chr1 29395651 29395859 -213268494 - AluJo SINE Alu -12 300 85 2066 122 3 0 chr1 29395888 29396183 -213268170 + AluSx SINE Alu 1 296 -16 2162 101 3 3 chr1 29396858 29397155 -213267198 - AluSg SINE Alu -13 297 1 754 105 0 0 chr1 29397155 29397260 -213267093 - AluSg1 SINE Alu -12 297 193 995 70 0 8 chr1 29397260 29397389 -213266964 - AluSg1 SINE Alu -181 128 1 27 29 0 0 chr1 29397429 29397463 -213266890 + AT_rich Low_complexity Low_complexity 1 34 0 689 259 116 58 chr1 29397463 29397791 -213266562 + L1ME4a LINE L1 5625 5971 -150 2227 89 0 16 chr1 29397829 29398132 -213266221 - AluSc SINE Alu -11 298 1 387 222 231 0 chr1 29398175 29398283 -213266070 - FRAM SINE Alu -33 133 1 1153 404 3 27 chr1 29398313 29398610 -213265743 - AluSx SINE Alu -8 294 5 1518 181 4 0 chr1 29398610 29398880 -213265473 - AluSq SINE Alu -42 271 1 363 44 0 0 chr1 29399673 29399718 -213264635 + (TA)n Simple_repeat Simple_repeat 1 45 0 2198 106 3 0 chr1 29399718 29400021 -213264332 - AluSp SINE Alu -9 304 1 541 130 0 0 chr1 29400294 29400371 -213263982 + AluSc SINE Alu 2 78 -231 2267 75 0 3 chr1 29400371 29400665 -213263688 + AluY SINE Alu 1 293 -18 1688 99 0 37 chr1 29400665 29400907 -213263446 + AluSc SINE Alu 63 296 -13 2335 83 0 0 chr1 29400909 29401209 -213263144 + AluY SINE Alu 3 302 -9 2183 90 10 0 chr1 29401227 29401517 -213262836 + AluSx SINE Alu 13 305 -7 1556 159 66 10 chr1 29401910 29402199 -213262154 + AluJb SINE Alu 1 305 -7 2018 117 0 42 chr1 29402205 29402348 -213262005 + AluSg SINE Alu 1 148 -162 2400 66 0 7 chr1 29402348 29402653 -213261700 + AluY SINE Alu 1 303 -8 2018 117 0 42 chr1 29402653 29402818 -213261535 + AluSg SINE Alu 148 296 -14 1168 206 0 52 chr1 29402987 29403239 -213261114 - MER8 DNA MER2_type 0 239 1 2307 50 10 13 chr1 29403386 29403685 -213260668 - AluY SINE Alu -13 298 1 1652 189 31 0 chr1 29403691 29403977 -213260376 - AluJo SINE Alu -17 295 1 1886 64 142 15 chr1 29404887 29405154 -213259199 + AluY SINE Alu 1 301 0 267 327 109 20 chr1 29405155 29405256 -213259097 - MIR SINE MIR -133 129 20 319 280 40 72 chr1 29405414 29405497 -213258856 - L2 LINE L2 0 3272 3193 2196 103 6 3 chr1 29405497 29405809 -213258544 + AluSp SINE Alu 1 313 0 319 280 40 72 chr1 29405809 29405850 -213258503 - L2 LINE L2 -79 3193 3152 39 60 0 0 chr1 29405961 29406028 -213258325 + AT_rich Low_complexity Low_complexity 1 67 0 474 212 40 13 chr1 29406507 29406637 -213257716 - MIR SINE MIR -62 146 62 259 115 0 96 chr1 29406683 29406726 -213257627 + AluJo/FLAM SINE Alu 87 126 -176 2261 80 0 7 chr1 29406726 29407025 -213257328 - AluSx SINE Alu -15 297 1 817 161 0 27 chr1 29407040 29407189 -213257164 + AluY SINE Alu 128 272 -39 1334 82 0 0 chr1 29407297 29407468 -213256885 - AluSg SINE Alu -138 172 2 2204 79 10 3 chr1 29407666 29407957 -213256396 - AluSp SINE Alu -20 293 1 1663 128 0 67 chr1 29407990 29408302 -213256051 - AluSx SINE Alu -21 291 1 1819 156 3 0 chr1 29408706 29409001 -213255352 - AluJo SINE Alu -16 296 1 1784 103 65 0 chr1 29409046 29409307 -213255046 - AluSp SINE Alu -35 278 1 1533 156 32 3 chr1 29409794 29410076 -213254277 + AluJb SINE Alu 1 290 -22 984 93 0 15 chr1 29412465 29412711 -213251642 + AluSq SINE Alu 2 300 -13 1860 140 24 3 chr1 29413165 29413457 -213250896 + AluSx SINE Alu 1 298 -14 329 312 147 23 chr1 29413577 29413795 -213250558 - MIR SINE MIR 0 262 18 1088 121 4 143 chr1 29413844 29414004 -213250349 - AluSg/x SINE Alu -23 287 167 189 0 0 0 chr1 29414004 29414025 -213250328 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1088 121 4 143 chr1 29414025 29414095 -213250258 - AluSg/x SINE Alu -143 167 89 2258 114 0 0 chr1 29414125 29414424 -213249929 + AluSg SINE Alu 1 299 -11 895 100 0 8 chr1 29414443 29414563 -213249790 - FLAM_C SINE Alu -24 119 1 2063 107 0 7 chr1 29415287 29415568 -213248785 + AluSc SINE Alu 24 302 -7 1995 160 6 10 chr1 29415701 29416013 -213248340 - AluJb SINE Alu -1 311 1 3630 177 33 83 chr1 29416022 29416798 -213247555 - MER21B LTR ERV1 -22 841 27 2262 92 0 57 chr1 29416798 29417113 -213247240 + AluSc SINE Alu 2 298 -11 3630 177 33 83 chr1 29417113 29417129 -213247224 - MER21B LTR ERV1 -836 27 95 2515 49 3 23 chr1 29417129 29417434 -213246919 + AluY SINE Alu 1 299 -12 3630 177 33 83 chr1 29417434 29417526 -213246827 - MER21B LTR ERV1 -767 96 1 945 223 0 0 chr1 29418022 29418197 -213246156 + FAM SINE Alu 1 175 0 240 288 110 14 chr1 29418212 29418285 -213246068 - MIR SINE MIR -107 101 22 2472 55 7 19 chr1 29419575 29419882 -213244471 + AluSq SINE Alu 1 303 -10 2409 79 3 23 chr1 29420068 29420373 -213243980 + AluSx SINE Alu 1 299 -13 1126 133 6 0 chr1 29421098 29421256 -213243097 + AluSg/x SINE Alu 134 292 -18 2364 96 0 3 chr1 29421257 29421569 -213242784 + AluY SINE Alu 1 311 0 1746 118 66 21 chr1 29422660 29422949 -213241404 + AluSq SINE Alu 1 302 -11 638 192 0 33 chr1 29423048 29423168 -213241185 - FAM SINE Alu -21 164 49 2083 118 26 7 chr1 29423522 29423828 -213240525 + AluSx SINE Alu 1 312 0 22 0 0 0 chr1 29425404 29425426 -213238927 + GC_rich Low_complexity Low_complexity 1 22 0 321 316 111 12 chr1 29426126 29426297 -213238056 - MIR SINE MIR -6 256 69 2169 79 7 7 chr1 29426797 29427103 -213237250 + AluSc SINE Alu 4 309 0 331 284 75 45 chr1 29427235 29427369 -213236984 + MIR SINE MIR 50 187 -75 25 0 0 28 chr1 29427370 29427388 -213236965 + AT_rich Low_complexity Low_complexity 1 18 -17 2149 123 0 3 chr1 29427388 29427696 -213236657 + AluSx SINE Alu 1 307 -5 25 0 0 28 chr1 29427696 29427713 -213236640 + AT_rich Low_complexity Low_complexity 18 35 0 203 119 262 0 chr1 29428112 29428154 -213236199 - L2 LINE L2 -6 3307 3255 427 268 97 40 chr1 29428285 29428395 -213235958 - L2 LINE L2 -213 3059 2957 2344 92 0 6 chr1 29428395 29428709 -213235644 + AluSq SINE Alu 1 312 -1 427 268 97 40 chr1 29428709 29428826 -213235527 - L2 LINE L2 -315 2957 2819 1141 160 0 0 chr1 29428836 29429005 -213235348 + AluSg/x SINE Alu 127 295 -15 2253 84 38 0 chr1 29429007 29429294 -213235059 + AluY SINE Alu 1 298 -13 552 268 78 123 chr1 29429328 29429523 -213234830 - L2 LINE L2 -579 2735 2533 679 200 15 8 chr1 29429523 29429653 -213234700 + AluJo/FLAM SINE Alu 3 133 -169 2420 97 0 0 chr1 29429655 29429963 -213234390 + AluSc SINE Alu 1 308 -1 552 268 78 123 chr1 29429963 29430212 -213234141 - L2 LINE L2 -782 2532 2273 2524 63 3 0 chr1 29430212 29430514 -213233839 + AluY SINE Alu 1 303 -8 552 268 78 123 chr1 29430514 29430540 -213233813 - L2 LINE L2 -1041 2273 2247 1942 145 3 39 chr1 29430540 29430674 -213233679 + AluJo SINE Alu 1 138 -174 198 0 0 0 chr1 29430674 29430696 -213233657 + (TA)n Simple_repeat Simple_repeat 2 23 0 1942 145 3 39 chr1 29430696 29430871 -213233482 + AluJo SINE Alu 138 299 -13 552 268 78 123 chr1 29430871 29431014 -213233339 - L2 LINE L2 -1067 2247 2145 204 327 109 40 chr1 29431049 29431150 -213233203 + MIR3 SINE MIR 94 201 -7 2193 110 0 20 chr1 29431591 29431883 -213232470 + AluSg SINE Alu 1 286 -24 1695 156 57 11 chr1 29431904 29432186 -213232167 - AluJo SINE Alu -7 305 11 283 275 53 76 chr1 29432209 29432340 -213232013 + L2 LINE L2 2916 3043 -229 2204 116 3 0 chr1 29432625 29432919 -213231434 + AluSx SINE Alu 1 295 -17 1489 65 0 0 chr1 29432973 29433142 -213231211 + AluSq SINE Alu 1 169 -144 313 153 17 0 chr1 29533142 29533201 -213131152 + AluSp/q SINE Alu 242 301 -2 1585 203 3 10 chr1 29533226 29533521 -213130832 + AluJb SINE Alu 3 295 -17 209 332 113 28 chr1 29533544 29533827 -213130526 + L2 LINE L2 2171 2477 -837 1109 161 31 21 chr1 29533872 29534065 -213130288 - AluJb SINE Alu -2 310 116 2198 88 7 10 chr1 29534070 29534366 -213129987 + AluSq SINE Alu 1 295 -18 2025 134 0 3 chr1 29534370 29534675 -213129678 + AluY SINE Alu 4 307 -4 2434 92 10 0 chr1 29534681 29534984 -213129369 + AluSq SINE Alu 1 306 -7 862 141 0 30 chr1 29535205 29535340 -213129013 + FLAM_C SINE Alu 2 132 -1 1534 145 0 5 chr1 29535377 29535598 -213128755 + AluJb SINE Alu 86 305 -7 379 129 106 35 chr1 29535607 29535692 -213128661 + MER5B DNA MER1_type 88 178 0 204 225 0 0 chr1 29535919 29535959 -213128394 + CT-rich Low_complexity Low_complexity 2 41 0 21 0 0 0 chr1 29536010 29536031 -213128322 + AT_rich Low_complexity Low_complexity 1 21 0 2651 68 0 0 chr1 29536272 29536583 -213127770 + AluSq SINE Alu 1 311 -2 1890 128 3 47 chr1 29537128 29537424 -213126929 + AluSx SINE Alu 11 293 -19 739 111 222 0 chr1 29537424 29537541 -213126812 + AluSg/x SINE Alu 132 274 -36 2509 85 0 0 chr1 29537558 29537863 -213126490 + AluSx SINE Alu 1 305 -7 191 282 58 87 chr1 29537961 29538064 -213126289 - L2 LINE L2 -203 3069 2970 397 277 8 17 chr1 29538273 29538392 -213125961 + MIR SINE MIR 66 183 -79 1901 99 33 0 chr1 29538449 29538691 -213125662 + AluSc SINE Alu 1 250 -59 5212 172 16 1 chr1 29538768 29539682 -213124671 + Harlequin LTR ERV1 4616 5543 -1353 228 67 0 0 chr1 29539787 29539817 -213124536 + (C)n Simple_repeat Simple_repeat 1 30 0 373 273 55 60 chr1 29539857 29540040 -213124313 - LTR2 LTR ERV1 -267 182 1 355 250 194 25 chr1 29540068 29540228 -213124125 - MIR SINE MIR -56 206 20 1817 161 0 18 chr1 29540658 29540972 -213123381 + AluJb SINE Alu 1 309 0 2408 94 0 3 chr1 29541272 29541580 -213122773 + AluSx SINE Alu 1 307 -5 1611 165 4 14 chr1 29541903 29542182 -213122171 - AluJb SINE Alu -17 295 20 2031 138 38 0 chr1 29543760 29544050 -213120303 + AluSx SINE Alu 1 301 -11 921 119 6 50 chr1 29544671 29544830 -213119523 + AluSq/x SINE Alu 1 152 -161 192 143 0 0 chr1 29545113 29545141 -213119212 - MIR SINE MIR -20 242 215 2365 85 0 3 chr1 29545387 29545680 -213118673 - AluSg SINE Alu -18 292 1 837 221 25 0 chr1 29545687 29545850 -213118503 - AluSp SINE Alu -16 297 131 1470 64 0 0 chr1 29545856 29546028 -213118325 - AluY SINE Alu -13 298 127 2267 91 7 0 chr1 29546053 29546340 -213118013 - AluSx SINE Alu -23 289 1 189 0 0 0 chr1 29546340 29546361 -213117992 + (T)n Simple_repeat Simple_repeat 1 21 0 369 182 68 0 chr1 29546362 29546450 -213117903 - MER50 LTR ERV1 -142 592 499 2452 72 0 34 chr1 29546476 29546797 -213117556 - AluY SINE Alu -1 310 1 855 115 0 31 chr1 29546809 29546939 -213117414 - FLAM_C SINE Alu -17 126 1 1028 172 0 21 chr1 29546940 29547126 -213117227 - AluJo SINE Alu -11 301 120 1211 181 43 36 chr1 29547364 29547640 -213116713 + AluJo SINE Alu 32 309 -3 318 262 103 62 chr1 29548131 29548276 -213116077 + AluJo SINE Alu 1 151 -151 1975 191 62 9 chr1 29548382 29548832 -213115521 - L1ME LINE L1 -375 5791 5318 714 200 0 0 chr1 29548847 29548962 -213115391 - AluJo SINE Alu -195 117 3 2060 117 7 20 chr1 29548970 29549270 -213115083 - AluSx SINE Alu -16 296 1 948 212 55 11 chr1 29549360 29549443 -213114910 - L1ME LINE L1 -863 5283 5205 2259 106 0 7 chr1 29549443 29549746 -213114607 - AluSg1 SINE Alu -8 301 1 948 212 55 11 chr1 29549746 29549936 -213114417 - L1ME LINE L1 -941 5205 4998 2282 102 0 0 chr1 29549945 29550239 -213114114 - AluSq SINE Alu -17 296 3 231 348 108 19 chr1 29550242 29550400 -213113953 + L2 LINE L2 2586 2757 -557 248 100 0 20 chr1 29550414 29550464 -213113889 + (TG)n Simple_repeat Simple_repeat 1 49 0 748 171 0 57 chr1 29550713 29550853 -213113500 + AluJo/FLAM SINE Alu 1 132 -170 2255 124 7 0 chr1 29550856 29551162 -213113191 + AluSx SINE Alu 1 308 -4 231 296 25 0 chr1 29551192 29551273 -213113080 + MIR SINE MIR 110 192 -70 753 281 43 11 chr1 29551761 29552042 -213112311 + LTR16A LTR ERVL 155 444 -6 1055 158 0 0 chr1 29552187 29552345 -213112008 + AluSx SINE Alu 2 159 -153 480 119 0 0 chr1 29552445 29552512 -213111841 - AluS SINE Alu -245 68 2 1372 221 20 7 chr1 29552518 29552817 -213111536 - AluJo SINE Alu -9 303 1 1795 168 3 20 chr1 29552825 29553123 -213111230 - AluJo SINE Alu -19 293 1 2261 114 3 0 chr1 29553153 29553450 -213110903 + AluSx SINE Alu 1 298 -14 874 207 124 0 chr1 29553471 29553664 -213110689 - MER20 DNA MER1_type -1 218 2 1556 179 58 3 chr1 29553689 29553980 -213110373 + AluJo SINE Alu 1 307 -5 2207 124 0 0 chr1 29554084 29554382 -213109971 - AluSx SINE Alu -14 298 1 222 185 93 0 chr1 29554684 29554738 -213109615 + L2 LINE L2 3206 3264 -8 544 199 48 34 chr1 29555302 29555448 -213108905 - L2 LINE L2 -8 3305 3158 2415 85 0 25 chr1 29555476 29555793 -213108560 - AluY SINE Alu -2 309 1 709 94 0 0 chr1 29555962 29556058 -213108295 + AluSp/q SINE Alu 155 250 -63 1366 135 9 22 chr1 29556058 29556287 -213108066 + AluSg/x SINE Alu 83 308 -2 2357 102 0 7 chr1 29556312 29556615 -213107738 + AluSg SINE Alu 1 301 -9 1649 131 20 116 chr1 29556826 29556968 -213107385 + AluYb8 SINE Alu 1 155 -163 2190 130 0 0 chr1 29556968 29557269 -213107084 + AluSg SINE Alu 1 301 -9 1649 131 20 116 chr1 29557269 29557470 -213106883 + AluYb8 SINE Alu 155 311 -7 974 188 0 18 chr1 29557471 29557641 -213106712 + AluJb SINE Alu 133 299 -13 333 298 37 43 chr1 29558923 29559111 -213105242 - L2 LINE L2 -161 3111 2925 183 299 26 26 chr1 29559237 29559314 -213105039 - L2 LINE L2 -213 3059 2983 250 300 36 45 chr1 29559338 29559448 -213104905 + MIR SINE MIR 41 149 -59 2241 93 10 30 chr1 29559466 29559768 -213104585 - AluSq SINE Alu -17 296 1 225 313 99 42 chr1 29559795 29559987 -213104366 - L2 LINE L2 -1216 2098 1896 276 345 63 6 chr1 29760782 29760956 -212903397 + L1ME4a LINE L1 5611 5794 -327 258 271 53 65 chr1 29760968 29761138 -212903215 + L1ME4a LINE L1 5864 6031 -90 1776 145 13 20 chr1 29761144 29761322 -212903031 - AluJo SINE Alu 0 312 135 2151 121 0 0 chr1 29761322 29761627 -212902726 - AluSx SINE Alu -7 305 1 1776 145 13 20 chr1 29761627 29761751 -212902602 - AluJo SINE Alu -177 135 12 1778 121 30 40 chr1 29761767 29762065 -212902288 - AluJb SINE Alu -17 295 1 699 133 0 0 chr1 29762411 29762516 -212901837 + AluSg/x SINE Alu 208 312 0 24 32 0 0 chr1 29762522 29762553 -212901800 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr1 29762815 29762839 -212901514 + AT_rich Low_complexity Low_complexity 1 24 0 720 167 48 8 chr1 29762840 29762966 -212901387 - FLAM_C SINE Alu -2 131 1 309 213 76 16 chr1 29762966 29763076 -212901277 + MIR SINE MIR 41 153 -55 2215 99 3 0 chr1 29763102 29763396 -212900957 - AluSq SINE Alu -18 295 1 192 307 40 10 chr1 29764742 29764843 -212899510 + MIR3 SINE MIR 55 158 -50 400 319 53 0 chr1 29765877 29766065 -212898288 - MIR SINE MIR -6 256 59 192 241 0 0 chr1 29766339 29766397 -212897956 + L2 LINE L2 2994 3051 -221 211 219 207 0 chr1 29766482 29766564 -212897789 - MIR SINE MIR -63 145 47 214 225 11 45 chr1 29767697 29767786 -212896567 + (CGGGG)n Simple_repeat Simple_repeat 5 90 0 432 309 0 36 chr1 29767910 29768075 -212896278 - MIR SINE MIR -80 182 24 180 50 25 50 chr1 29768380 29768420 -212895933 + (TCTCC)n Simple_repeat Simple_repeat 5 43 0 717 155 0 0 chr1 29768549 29768652 -212895701 + FRAM SINE Alu 45 147 -29 180 0 0 0 chr1 29768652 29768672 -212895681 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 238 125 0 54 chr1 29768674 29768730 -212895623 + L1MA2 LINE L1 6248 6300 -4 238 282 48 40 chr1 29768805 29768929 -212895424 - MIR SINE MIR 0 262 138 1233 54 0 0 chr1 29769110 29769257 -212895096 + L1PA5 LINE L1 5999 6145 -9 23 0 0 0 chr1 29769257 29769280 -212895073 + AT_rich Low_complexity Low_complexity 1 23 0 2967 55 3 0 chr1 29769280 29769663 -212894690 + L1PA6 LINE L1 5770 6153 -1 42 0 0 0 chr1 29769663 29769705 -212894648 + AT_rich Low_complexity Low_complexity 1 42 0 2071 101 0 27 chr1 29769830 29770128 -212894225 - AluY SINE Alu -21 290 1 835 107 0 94 chr1 29770128 29770190 -212894163 - AluSq/x SINE Alu -178 135 69 2223 89 3 0 chr1 29770190 29770483 -212893870 - AluSp SINE Alu -19 294 1 835 107 0 94 chr1 29770483 29770569 -212893784 - AluSq/x SINE Alu -244 69 1 252 284 43 74 chr1 29770690 29770852 -212893501 + L2 LINE L2 2911 3067 -205 502 231 125 19 chr1 29770910 29771070 -212893283 + L2 LINE L2 2588 2764 -550 1243 106 0 6 chr1 29771073 29771243 -212893110 - AluSq SINE Alu -144 169 1 225 370 14 0 chr1 29771259 29771332 -212893021 + L2 LINE L2 3100 3173 -99 387 292 305 14 chr1 29771353 29771720 -212892633 + L2 LINE L2 2824 3297 -16 2133 109 7 3 chr1 29771724 29772026 -212892327 - AluSq SINE Alu -10 303 1 209 294 132 0 chr1 29772048 29772116 -212892237 + L2 LINE L2 3097 3173 -99 2225 86 0 3 chr1 29772185 29772476 -212891877 + AluSq SINE Alu 1 290 -23 254 210 200 50 chr1 29772497 29772597 -212891756 + L2 LINE L2 3192 3306 -7 185 316 61 31 chr1 29772602 29772700 -212891653 + L2 LINE L2 3169 3269 -3 213 94 0 0 chr1 29772787 29772819 -212891534 + (CA)n Simple_repeat Simple_repeat 2 33 0 378 255 121 15 chr1 29773018 29773172 -212891181 + MIR SINE MIR 15 181 -81 2030 101 6 80 chr1 29773433 29773770 -212890583 + AluSq SINE Alu 2 313 0 1916 171 0 0 chr1 29773992 29774301 -212890052 + AluJb SINE Alu 1 309 -3 531 323 96 14 chr1 29774838 29775129 -212889224 - L2 LINE L2 -2 3311 2997 563 225 23 0 chr1 29775314 29775443 -212888910 - MIR SINE MIR -77 185 54 21 0 0 0 chr1 29779590 29779611 -212884742 + AT_rich Low_complexity Low_complexity 1 21 0 2549 42 0 7 chr1 29780518 29780826 -212883527 - AluY SINE Alu -5 306 1 536 280 169 0 chr1 29780847 29781036 -212883317 - MIR SINE MIR -19 243 23 2426 69 0 3 chr1 29781095 29781399 -212882954 - AluSx SINE Alu -9 303 1 275 285 73 32 chr1 29781690 29781813 -212882540 - MIR3 SINE MIR -22 186 59 1961 79 29 29 chr1 29781879 29782159 -212882194 + AluSx SINE Alu 1 280 -32 250 329 0 14 chr1 29782348 29782421 -212881932 - MIR SINE MIR -82 180 109 421 236 110 33 chr1 29782445 29782627 -212881726 - L2 LINE L2 -97 3216 3021 297 301 29 29 chr1 29782607 29782710 -212881643 - MIR SINE MIR -90 118 16 * 191 344 16 0 chr1 29783544 29783605 -212880748 + L2 LINE L2 3125 3186 -86 360 250 11 0 chr1 29785895 29785983 -212878370 + MIR SINE MIR 54 142 -66 219 275 50 12 chr1 29786058 29786138 -212878215 - MIR3 SINE MIR -17 191 109 2037 145 0 0 chr1 29786363 29786667 -212877686 - AluSx SINE Alu -8 304 1 342 251 272 21 chr1 29787325 29787516 -212876837 + MIR SINE MIR 21 259 -3 342 274 24 0 chr1 29787526 29787610 -212876743 - MIR SINE MIR -89 119 34 198 0 0 0 chr1 29789956 29789978 -212874375 + (T)n Simple_repeat Simple_repeat 1 22 0 470 211 55 28 chr1 29791552 29791661 -212872692 + MIR SINE MIR 21 132 -76 222 171 0 0 chr1 29793166 29793207 -212871146 + G-rich Low_complexity Low_complexity 1 41 0 2404 57 0 10 chr1 29793489 29793803 -212870550 + AluY SINE Alu 1 311 0 240 35 0 0 chr1 29794178 29794207 -212870146 + (GGA)n Simple_repeat Simple_repeat 1 29 0 326 379 45 20 chr1 29794665 29794863 -212869490 + L3 LINE CR1 1356 1558 -19 2339 87 0 10 chr1 29795928 29796262 -212868091 + AluY SINE Alu 1 311 0 677 238 74 21 chr1 29796301 29796490 -212867863 + MIR SINE MIR 13 211 -51 1706 160 23 13 chr1 29796557 29796857 -212867496 - AluJo SINE Alu -9 303 1 416 266 166 12 chr1 29799431 29799600 -212864753 - L3 LINE CR1 -1 1576 1382 207 0 0 0 chr1 29799707 29799730 -212864623 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 21 0 0 0 chr1 29803221 29803242 -212861111 + AT_rich Low_complexity Low_complexity 1 21 0 1359 112 24 0 chr1 29803770 29803975 -212860378 + AluSg/x SINE Alu 85 294 -18 1979 139 0 7 chr1 29804258 29804560 -212859793 - AluSx SINE Alu -12 300 1 2253 81 3 10 chr1 29804868 29805175 -212859178 - AluSx SINE Alu -5 307 3 304 301 29 64 chr1 29805708 29805750 -212858603 + L1 LINE L1 3090 3132 -3014 1688 141 0 23 chr1 29805750 29805888 -212858465 + AluSx SINE Alu 1 132 -180 2101 116 0 0 chr1 29805888 29806181 -212858172 + AluSx SINE Alu 1 293 -19 1688 141 0 23 chr1 29806181 29806305 -212858048 + AluSx SINE Alu 132 257 -55 304 301 29 64 chr1 29806305 29806435 -212857918 + L1 LINE L1 3132 3256 -2890 473 253 79 34 chr1 29806661 29806692 -212857661 + MIR SINE MIR 20 48 -214 2457 72 0 0 chr1 29806692 29806997 -212857356 + AluY SINE Alu 1 305 -6 473 253 79 34 chr1 29806997 29807143 -212857210 + MIR SINE MIR 48 205 -57 1976 152 0 7 chr1 29807212 29807515 -212856838 + AluSx SINE Alu 1 301 -11 1899 114 53 13 chr1 29807538 29807837 -212856516 - AluSx SINE Alu -1 311 1 296 283 0 33 chr1 29808589 29808681 -212855672 + L2 LINE L2 2966 3054 -218 235 287 58 46 chr1 29808796 29808883 -212855470 - L2 LINE L2 -17 3255 3168 1357 142 67 52 chr1 29808888 29809156 -212855197 - AluJo SINE Alu -17 295 24 306 373 7 0 chr1 29809264 29809406 -212854947 - L2 LINE L2 -232 3040 2898 1617 200 20 3 chr1 29809441 29809746 -212854607 - AluJo SINE Alu -2 310 1 2169 98 3 32 chr1 29809779 29809915 -212854438 + AluSq SINE Alu 1 139 -174 2520 74 0 3 chr1 29809915 29810225 -212854128 + AluY SINE Alu 1 309 -2 2169 98 3 32 chr1 29810225 29810404 -212853949 + AluSq SINE Alu 139 307 -6 651 239 23 72 chr1 29810766 29810875 -212853478 + MIR SINE MIR 2 115 -147 2290 104 3 0 chr1 29810875 29811172 -212853181 - AluSx SINE Alu -14 298 1 651 239 23 72 chr1 29811172 29811328 -212853025 + MIR SINE MIR 115 256 -6 255 314 29 64 chr1 29811374 29811514 -212852839 + L2 LINE L2 3137 3271 -1 2257 104 3 3 chr1 29813855 29814154 -212850199 + AluSq SINE Alu 1 299 -14 2034 119 61 3 chr1 29814712 29815005 -212849348 - AluJb SINE Alu -2 310 1 769 185 8 0 chr1 29815005 29815135 -212849218 - AluJb SINE Alu -17 295 165 25 0 0 0 chr1 29815162 29815187 -212849166 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr1 29816667 29816694 -212847659 + AT_rich Low_complexity Low_complexity 1 27 0 2761 39 0 0 chr1 29816728 29817036 -212847317 + AluY SINE Alu 1 308 -3 1814 165 4 0 chr1 29817153 29817425 -212846928 - AluJo SINE Alu -37 275 3 1097 199 5 0 chr1 29817612 29817813 -212846540 - MER105 DNA DNA -1 203 2 511 285 88 73 chr1 29818424 29818684 -212845669 + L3 LINE CR1 1311 1574 -3 243 312 26 0 chr1 29818687 29818764 -212845589 + MIR3 SINE MIR 113 191 -17 227 291 25 0 chr1 29819217 29819296 -212845057 + L3 LINE CR1 1496 1576 -1 2318 89 7 3 chr1 29819317 29819610 -212844743 - AluSp SINE Alu -19 294 1 1584 178 7 11 chr1 29819670 29819939 -212844414 + AluJo SINE Alu 1 268 -44 285 75 0 0 chr1 29819990 29820030 -212844323 + (GGGTG)n Simple_repeat Simple_repeat 3 42 0 1760 158 19 53 chr1 29820530 29820852 -212843501 + AluJo SINE Alu 1 311 -1 418 242 112 39 chr1 29823436 29823657 -212840696 + MIR SINE MIR 4 236 -26 302 121 0 35 chr1 29823667 29823725 -212840628 + (TAG)n Simple_repeat Simple_repeat 2 57 0 1852 171 3 7 chr1 29824084 29824394 -212839959 + AluJb SINE Alu 1 309 -3 281 145 16 180 chr1 29824540 29824612 -212839741 - HsTC2 DNA Tc2 0 1898 1816 1857 163 10 0 chr1 29824612 29824901 -212839452 + AluJb SINE Alu 5 296 -16 281 145 16 180 chr1 29824901 29824950 -212839403 - HsTC2 DNA Tc2 -82 1816 3 724 188 0 0 chr1 29824960 29825077 -212839276 - FAM SINE Alu -23 162 46 631 132 108 78 chr1 29825152 29825238 -212839115 + MER7A DNA MER2_type 2 93 -2945 1979 149 0 3 chr1 29825238 29825534 -212838819 - AluSq SINE Alu -18 295 1 631 132 108 78 chr1 29825534 29825576 -212838777 + MER7A DNA MER2_type 93 132 -214 1663 182 3 33 chr1 29825577 29825712 -212838641 + AluJo SINE Alu 1 138 -164 2323 98 23 0 chr1 29825712 29825838 -212838515 + AluSx SINE Alu 1 123 -189 2693 36 0 3 chr1 29825838 29826144 -212838209 + AluY SINE Alu 1 305 -6 2323 98 23 0 chr1 29826144 29826322 -212838031 + AluSx SINE Alu 123 312 0 1663 182 3 33 chr1 29826322 29826488 -212837865 + AluJo SINE Alu 138 293 -9 293 119 0 0 chr1 29826515 29826557 -212837796 + FLAM SINE Alu 84 125 -8 284 167 33 0 chr1 29826560 29826620 -212837733 + L1MA3 LINE L1 6244 6305 0 2219 97 3 22 chr1 29826631 29826942 -212837411 + AluSg SINE Alu 1 305 -5 1616 184 0 41 chr1 29826944 29827088 -212837265 + AluJb SINE Alu 1 149 -153 2205 102 34 0 chr1 29827088 29827381 -212836972 + AluSg SINE Alu 1 303 -7 1616 184 0 41 chr1 29827381 29827550 -212836803 + AluJb SINE Alu 149 302 0 671 216 0 8 chr1 29827556 29827690 -212836663 + FLAM_A SINE Alu 1 133 0 2321 97 3 0 chr1 29827697 29827995 -212836358 + AluSq SINE Alu 1 299 -14 361 228 72 104 chr1 29828058 29828146 -212836207 + MIR SINE MIR 76 165 -97 2145 104 10 7 chr1 29828146 29828444 -212835909 - AluSq SINE Alu -14 299 1 1701 197 3 0 chr1 29828451 29828745 -212835608 - AluJo SINE Alu -17 295 1 361 228 72 104 chr1 29828745 29828841 -212835512 + MIR SINE MIR 171 262 0 307 316 132 13 chr1 29829532 29829760 -212834593 - MIR SINE MIR -6 256 2 1890 140 0 14 chr1 29830878 29831163 -212833190 + AluJb SINE Alu 19 299 -13 2000 147 31 0 chr1 29832933 29833225 -212831128 + AluSx SINE Alu 1 301 -11 199 336 135 0 chr1 29833573 29833677 -212830676 + L2 LINE L2 3142 3259 -13 2342 94 0 3 chr1 29833680 29833977 -212830376 + AluSx SINE Alu 1 296 -16 2367 107 0 0 chr1 29834226 29834526 -212829827 + AluSx SINE Alu 1 300 -12 2374 84 7 0 chr1 29834866 29835162 -212829191 - AluSp SINE Alu -15 298 1 236 130 22 0 chr1 29835168 29835214 -212829139 + CT-rich Low_complexity Low_complexity 3 49 0 949 136 0 0 chr1 29835293 29835425 -212828928 + FLAM_C SINE Alu 2 133 0 186 324 141 0 chr1 29835488 29835559 -212828794 - L2 LINE L2 -36 3236 3156 412 263 167 44 chr1 29835715 29836008 -212828345 - L2 LINE L2 -342 2972 2644 1320 165 143 0 chr1 29836148 29836414 -212827939 - MER44D DNA MER2_type 0 609 36 2192 96 0 0 chr1 29836596 29836868 -212827485 + AluSc SINE Alu 1 272 -37 204 40 0 0 chr1 29836873 29836898 -212827455 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2214 112 7 10 chr1 29836898 29837203 -212827150 + AluSx SINE Alu 1 304 -8 2055 128 7 10 chr1 29837288 29837586 -212826767 + AluSx SINE Alu 2 298 -14 21 0 0 0 chr1 29837586 29837607 -212826746 + AT_rich Low_complexity Low_complexity 1 21 0 1758 119 0 0 chr1 29837674 29837910 -212826443 + AluSq SINE Alu 2 237 -76 224 178 0 0 chr1 29839268 29839313 -212825040 + MIR SINE MIR 105 149 -113 315 0 0 0 chr1 29840153 29840188 -212824165 + (TG)n Simple_repeat Simple_repeat 2 36 0 2034 134 3 0 chr1 29840430 29840720 -212823633 - AluSq SINE Alu -22 291 1 474 231 29 81 chr1 29840742 29840915 -212823438 + L2 LINE L2 3148 3311 -2 1460 77 0 11 chr1 29842055 29842237 -212822116 - AluY SINE Alu -131 180 1 201 333 7 0 chr1 29842373 29842511 -212821842 + (TG)n Simple_repeat Simple_repeat 2 140 0 252 0 0 0 chr1 29842692 29842720 -212821633 + (TG)n Simple_repeat Simple_repeat 1 28 0 525 311 8 66 chr1 29842993 29843250 -212821103 - MLT1H LTR MaLR -285 264 23 312 254 0 0 chr1 29843269 29843340 -212821013 - MIR SINE MIR -108 154 84 192 349 40 16 chr1 29844042 29844168 -212820185 + L2 LINE L2 2849 2977 -337 784 175 12 19 chr1 29844470 29844832 -212819521 + GA-rich Low_complexity Low_complexity 1 359 0 192 77 0 0 chr1 29894901 29894927 -212769426 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 357 277 109 8 chr1 29895410 29895529 -212768824 + L2 LINE L2 3179 3309 -4 707 251 54 0 chr1 29895680 29895847 -212768506 + MER5B DNA MER1_type 2 177 -1 1088 135 6 0 chr1 29895920 29896090 -212768263 - AluSg/x SINE Alu -2 310 140 660 224 40 88 chr1 29896119 29896369 -212767984 + MIR SINE MIR 23 260 -2 288 294 0 18 chr1 29896451 29896464 -212767889 + A-rich Low_complexity Low_complexity 1 13 -94 2133 88 33 16 chr1 29896464 29896769 -212767584 + AluSg SINE Alu 1 310 0 288 294 0 18 chr1 29896769 29896796 -212767557 + A-rich Low_complexity Low_complexity 13 39 -68 2238 69 0 7 chr1 29896796 29897086 -212767267 - AluY SINE Alu -22 289 2 288 294 0 18 chr1 29897086 29897113 -212767240 + A-rich Low_complexity Low_complexity 39 65 -42 838 163 0 0 chr1 29897113 29897242 -212767111 + FLAM_C SINE Alu 1 129 -4 288 294 0 18 chr1 29897242 29897281 -212767072 + A-rich Low_complexity Low_complexity 65 107 0 273 239 87 61 chr1 29897288 29897429 -212766924 + MIR SINE MIR 45 190 -59 219 258 144 23 chr1 29898434 29898566 -212765787 + L2 LINE L2 2915 3062 -210 291 130 0 0 chr1 29899914 29899968 -212764385 + (T)n Simple_repeat Simple_repeat 1 54 0 217 213 0 21 chr1 29900301 29900348 -212764005 + CT-rich Low_complexity Low_complexity 2 47 0 201 125 28 0 chr1 29900740 29900779 -212763574 + MIR SINE MIR 102 142 -66 705 279 92 18 chr1 29900854 29901083 -212763270 + MIR SINE MIR 17 262 0 404 312 30 55 chr1 29902900 29903099 -212761254 - L2 LINE L2 -37 3235 3042 2178 102 6 10 chr1 29903785 29904098 -212760255 + AluSx SINE Alu 1 312 0 329 240 32 96 chr1 29904118 29904169 -212760184 + MIR3 SINE MIR 74 127 -81 1866 172 0 0 chr1 29904169 29904472 -212759881 - AluJb SINE Alu -1 311 9 329 240 32 96 chr1 29904472 29904545 -212759808 + MIR3 SINE MIR 127 190 -18 1981 132 13 10 chr1 29904793 29905104 -212759249 - AluJo SINE Alu 0 312 1 2361 87 0 0 chr1 29905111 29905409 -212758944 - AluSg SINE Alu -12 298 1 203 268 56 14 chr1 29905547 29905618 -212758735 + MIR3 SINE MIR 83 156 -52 195 100 0 0 chr1 29905629 29905659 -212758694 + (TC)n Simple_repeat Simple_repeat 1 30 0 198 363 73 50 chr1 29905736 29905915 -212758438 + MIR3 SINE MIR 11 193 -15 268 258 117 39 chr1 29906231 29906359 -212757994 - L2 LINE L2 -202 3070 2933 225 0 0 0 chr1 29906667 29906692 -212757661 + (A)n Simple_repeat Simple_repeat 1 25 0 2248 116 0 0 chr1 29906974 29907284 -212757069 - AluSx SINE Alu -2 310 1 2271 93 0 3 chr1 29907294 29907594 -212756759 - AluSq SINE Alu -13 300 2 296 289 48 19 chr1 29907623 29907727 -212756626 + L2 LINE L2 3153 3259 -13 336 311 198 14 chr1 29908188 29908400 -212755953 - MIR SINE MIR -4 258 8 294 339 27 0 chr1 29909170 29909282 -212755071 + L2 LINE L2 2932 3046 -226 2132 107 7 7 chr1 29909328 29909628 -212754725 + AluSg SINE Alu 1 300 -10 233 348 36 43 chr1 29909631 29909769 -212754584 - MIR3 SINE MIR -40 168 32 * 253 304 122 20 chr1 29909707 29909855 -212754498 + MIR SINE MIR 21 183 -79 205 315 115 42 chr1 29909992 29910157 -212754196 + L2 LINE L2 3112 3288 -25 435 313 223 22 chr1 29910425 29911002 -212753351 + L2 LINE L2 2572 3272 0 460 287 42 30 chr1 29911449 29911616 -212752737 - MIR3 SINE MIR -22 186 18 189 0 0 0 chr1 29914507 29914528 -212749825 + (GGA)n Simple_repeat Simple_repeat 3 23 0 22 35 0 0 chr1 29917669 29917698 -212746655 + GC_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 29917800 29917822 -212746531 + GC_rich Low_complexity Low_complexity 1 22 0 2059 125 7 0 chr1 29918066 29918362 -212745991 - AluSx SINE Alu -14 298 1 632 280 22 11 chr1 29918876 29919058 -212745295 - MIR SINE MIR -14 248 65 352 318 23 8 chr1 29919192 29919321 -212745032 - MIR SINE MIR 0 262 132 306 262 28 121 chr1 29919327 29919449 -212744904 + L2 LINE L2 3144 3253 -19 1963 138 3 13 chr1 29919449 29919754 -212744599 + AluJo SINE Alu 1 302 -10 306 262 28 121 chr1 29919754 29919772 -212744581 + L2 LINE L2 3253 3271 -1 470 367 68 11 chr1 29919906 29920170 -212744183 + L2 LINE L2 3029 3307 -6 240 167 21 21 chr1 29920177 29920225 -212744128 - MIR SINE MIR -180 82 35 495 246 66 36 chr1 29920517 29920734 -212743619 - MIR SINE MIR -40 222 8 267 330 9 27 chr1 29920823 29920935 -212743418 - MER5A DNA MER1_type -35 154 45 372 181 96 14 chr1 29920952 29921039 -212743314 - MIR3 SINE MIR -47 161 65 186 265 0 0 chr1 29922309 29922358 -212741995 - MIR SINE MIR -136 126 78 212 283 17 0 chr1 29924163 29924223 -212740130 + MIR3 SINE MIR 101 161 -47 1871 122 0 31 chr1 29924730 29925016 -212739337 - AluJo SINE Alu -30 282 6 424 274 104 7 chr1 29925103 29925238 -212739115 + MIR SINE MIR 5 152 -110 216 0 0 0 chr1 29925866 29925890 -212738463 + (TG)n Simple_repeat Simple_repeat 1 24 0 232 205 0 72 chr1 29926512 29926595 -212737758 + (TG)n Simple_repeat Simple_repeat 1 77 0 209 159 23 0 chr1 29926601 29926645 -212737708 + CT-rich Low_complexity Low_complexity 2 46 0 372 234 0 0 chr1 29927341 29927482 -212736871 + GA-rich Low_complexity Low_complexity 2 142 0 219 167 0 0 chr1 29928779 29928821 -212735532 + (CACG)n Simple_repeat Simple_repeat 1 42 0 183 80 0 0 chr1 29928847 29928872 -212735481 + (CA)n Simple_repeat Simple_repeat 2 26 0 192 179 0 0 chr1 29928896 29928935 -212735418 + (CA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr1 29928961 29928986 -212735367 + (CA)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr1 29929010 29929034 -212735319 + (CA)n Simple_repeat Simple_repeat 2 25 0 289 333 56 0 chr1 29929842 29929950 -212734403 + MIR SINE MIR 10 117 -91 203 240 60 0 chr1 29930087 29930137 -212734216 + MIR SINE MIR 118 170 -92 234 311 85 9 chr1 29930187 29930293 -212734060 - MIR SINE MIR -76 132 19 258 227 202 25 chr1 29930531 29930650 -212733703 - MIR3 SINE MIR -23 185 46 314 301 47 76 chr1 29930938 29931174 -212733179 + L1M4b LINE L1 443 671 -6188 439 329 4 7 chr1 29931915 29932138 -212732215 + GA-rich Low_complexity Low_complexity 1 222 0 188 111 28 0 chr1 29932330 29932366 -212731987 + GA-rich Low_complexity Low_complexity 2 38 0 25 31 0 0 chr1 29934245 29934277 -212730076 + GC_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr1 29934359 29934395 -212729958 + GC_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr1 29934426 29934453 -212729900 + GC_rich Low_complexity Low_complexity 1 27 0 226 127 164 0 chr1 29934866 29934921 -212729432 + MIR SINE MIR 31 94 -168 346 270 79 0 chr1 29934973 29935062 -212729291 - MIR SINE MIR -77 185 90 234 277 299 7 chr1 29936026 29936163 -212728190 - MIR3 SINE MIR -16 192 16 493 252 0 24 chr1 29938881 29939008 -212725345 - MIR3 SINE MIR -4 204 81 373 242 11 11 chr1 29939482 29939577 -212724776 - MIR SINE MIR -98 164 70 438 272 62 12 chr1 29940050 29940212 -212724141 - MIR SINE MIR -25 237 68 26 30 0 0 chr1 29941318 29941351 -212723002 + GC_rich Low_complexity Low_complexity 1 33 0 24 77 0 0 chr1 29941383 29941435 -212722918 + GC_rich Low_complexity Low_complexity 1 52 0 188 211 75 6 chr1 29941853 29941912 -212722441 + MIR3 SINE MIR 117 177 -51 231 222 56 67 chr1 29941929 29942019 -212722334 + MIR3 SINE MIR 79 167 -41 462 264 168 6 chr1 29942127 29942294 -212722059 - MIR SINE MIR -56 206 13 1122 155 57 67 chr1 29943767 29943973 -212720380 + MER33 DNA MER1_type 1 207 -2378 2211 106 3 0 chr1 29943973 29944275 -212720078 + AluSx SINE Alu 1 303 -9 1122 155 57 67 chr1 29944275 29944363 -212719990 + MER33 DNA MER1_type 207 294 -2291 2199 98 0 3 chr1 29944363 29944659 -212719694 - AluSg SINE Alu -13 297 3 1122 155 57 67 chr1 29944659 29944679 -212719674 + MER33 DNA MER1_type 294 313 -11 1153 176 48 5 chr1 29944708 29944918 -212719435 - AluJo SINE Alu -10 302 84 770 214 66 16 chr1 29945315 29945497 -212718856 + MER58A DNA MER1_type 1 191 -33 539 271 182 19 chr1 29946205 29946419 -212717934 + MIR SINE MIR 14 262 0 2283 86 3 0 chr1 29946509 29946800 -212717553 - AluSx SINE Alu -20 292 1 1110 130 125 0 chr1 29946802 29946986 -212717367 - AluJo SINE Alu -19 293 87 32 0 0 0 chr1 29946992 29947024 -212717329 + AT_rich Low_complexity Low_complexity 1 32 0 231 390 44 26 chr1 29947252 29947480 -212716873 + L2 LINE L2 2578 2809 -505 218 343 29 20 chr1 29947952 29948054 -212716299 + MIR SINE MIR 110 212 -50 691 276 36 23 chr1 29948142 29948363 -212715990 + L2 LINE L2 3090 3313 0 256 325 264 15 chr1 29948356 29948553 -212715800 - MIR SINE MIR -12 250 5 * 1562 111 172 8 chr1 29948572 29948833 -212715520 - AluSg SINE Alu -6 304 1 181 291 150 36 chr1 29948897 29949117 -212715236 + L2 LINE L2 2845 3089 -183 375 251 75 22 chr1 29949320 29949524 -212714829 + MIR SINE MIR 5 262 0 239 294 15 0 chr1 29949657 29949725 -212714628 + L2 LINE L2 3245 3313 0 * 583 239 144 22 chr1 29949716 29949896 -212714457 - MIR SINE MIR -58 204 3 532 259 54 18 chr1 29949970 29950136 -212714217 - MIR SINE MIR -10 252 81 1455 73 0 0 chr1 29950556 29950733 -212713620 + AluSq SINE Alu 1 177 -136 1251 149 47 9 chr1 29950734 29950948 -212713405 + AluJb SINE Alu 90 311 -1 736 299 63 0 chr1 29950958 29951179 -212713174 + MIR SINE MIR 23 257 -5 519 253 96 0 chr1 29951476 29951622 -212712731 + MIR SINE MIR 34 193 -69 319 350 0 0 chr1 29952818 29952920 -212711433 - MIR3 SINE MIR -52 156 54 221 269 0 0 chr1 29953324 29953376 -212710977 + L2 LINE L2 3206 3257 -15 235 218 74 23 chr1 29953454 29953542 -212710811 - MIR SINE MIR -47 161 59 369 277 116 0 chr1 29953985 29954097 -212710256 + L2 LINE L2 3189 3313 0 205 308 0 17 chr1 29954943 29955060 -212709293 + (TCTCTG)n Simple_repeat Simple_repeat 6 120 0 398 238 68 54 chr1 29956996 29957143 -212707210 + MIR3 SINE MIR 36 184 -24 777 292 69 4 chr1 29957347 29957580 -212706773 + MIR SINE MIR 14 261 -1 248 257 54 14 chr1 29958325 29958399 -212705954 + MIR3 SINE MIR 78 154 -54 231 61 0 0 chr1 29961116 29961149 -212703204 + (TG)n Simple_repeat Simple_repeat 2 34 0 268 198 9 72 chr1 29962432 29962543 -212701810 + (CA)n Simple_repeat Simple_repeat 2 105 0 213 119 0 0 chr1 29963001 29963043 -212701310 + (TG)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr1 29963042 29963062 -212701291 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 228 317 0 4 chr1 29963425 29963657 -212700696 + CT-rich Low_complexity Low_complexity 1 230 0 * 397 299 19 0 chr1 29963557 29963711 -212700642 + (TCTG)n Simple_repeat Simple_repeat 4 160 0 273 385 30 24 chr1 29965186 29965355 -212698998 + MIR3 SINE MIR 36 205 -3 200 291 13 13 chr1 29967922 29968001 -212696352 + C-rich Low_complexity Low_complexity 4 82 0 21 95 0 0 chr1 29968732 29968795 -212695558 + GC_rich Low_complexity Low_complexity 1 63 0 266 85 0 21 chr1 29968811 29968858 -212695495 + (CCCCCT)n Simple_repeat Simple_repeat 3 48 0 21 36 0 0 chr1 29969260 29969288 -212695065 + GC_rich Low_complexity Low_complexity 1 28 0 278 263 10 10 chr1 29969426 29969525 -212694828 + CT-rich Low_complexity Low_complexity 1 99 0 215 81 54 0 chr1 29969592 29969629 -212694724 + CT-rich Low_complexity Low_complexity 2 40 0 229 280 11 32 chr1 29969683 29969776 -212694577 + (CCCG)n Simple_repeat Simple_repeat 3 93 0 * 261 226 0 0 chr1 29969726 29969788 -212694565 + CT-rich Low_complexity Low_complexity 1 62 0 33 43 0 0 chr1 29969889 29969936 -212694417 + GC_rich Low_complexity Low_complexity 1 47 0 326 271 160 42 chr1 29970703 29970847 -212693506 - MIR SINE MIR -96 166 6 273 286 267 6 chr1 29972435 29972596 -212691757 + MIR SINE MIR 35 237 -25 195 299 117 0 chr1 29972800 29972877 -212691476 - MIR SINE MIR -118 144 59 347 324 92 56 chr1 29973553 29973621 -212690732 + L2 LINE L2 2650 2714 -558 2214 88 7 0 chr1 29973621 29973916 -212690437 + AluSx SINE Alu 1 297 -15 347 324 92 56 chr1 29973916 29974367 -212689986 + L2 LINE L2 2714 3190 -82 581 118 16 64 chr1 29974507 29974694 -212689659 + (TG)n Simple_repeat Simple_repeat 2 179 0 247 279 99 23 chr1 29974883 29975055 -212689298 + L2 LINE L2 2817 3001 -271 562 256 69 6 chr1 29975347 29975507 -212688846 + MIR SINE MIR 41 210 -52 616 300 109 0 chr1 29976048 29976268 -212688085 + MIR SINE MIR 12 255 -7 603 201 22 22 chr1 29976286 29976425 -212687928 - MIR SINE MIR -104 158 20 366 23 0 0 chr1 29976757 29976800 -212687553 + (CA)n Simple_repeat Simple_repeat 1 43 0 440 275 137 17 chr1 29976832 29977065 -212687288 + MIR SINE MIR 2 262 0 264 259 53 107 chr1 29977074 29977205 -212687148 + L2 LINE L2 3142 3265 -7 279 247 32 32 chr1 29978392 29978485 -212685868 + MIR3 SINE MIR 112 204 -4 2224 93 27 0 chr1 29979088 29979388 -212684965 + AluSx SINE Alu 3 310 -2 984 243 72 0 chr1 29979544 29979779 -212684574 - MIR SINE MIR 0 262 11 225 225 0 0 chr1 29979804 29979844 -212684509 + L2 LINE L2 3223 3262 -10 493 220 10 0 chr1 29979860 29979960 -212684393 - MIR SINE MIR -114 148 48 196 291 185 20 chr1 29980287 29980438 -212683915 - MIR3 SINE MIR 0 208 33 209 346 56 56 chr1 29981629 29981843 -212682510 - L2 LINE L2 -108 3164 2951 613 311 89 22 chr1 29981856 29982216 -212682137 + L2 LINE L2 2388 2771 -543 304 257 105 40 chr1 29982365 29982517 -212681836 + MIR3 SINE MIR 18 179 -29 309 292 101 0 chr1 29983026 29983166 -212681187 + MIR SINE MIR 99 254 -8 369 229 178 0 chr1 29983267 29983385 -212680968 - MIR3 SINE MIR -63 145 7 203 301 129 33 chr1 29983320 29983592 -212680761 + L2 LINE L2 1889 2186 -1128 * 313 336 100 22 chr1 29983642 29983871 -212680482 + L3 LINE CR1 912 1158 -419 296 298 45 23 chr1 29983963 29984153 -212680200 - MIR SINE MIR -2 260 14 207 294 174 66 chr1 29984246 29984866 -212679487 + L2 LINE L2 1497 2199 -1115 2186 103 0 0 chr1 29984866 29985156 -212679197 - AluSx SINE Alu -22 290 1 207 294 174 66 chr1 29985156 29985219 -212679134 + L2 LINE L2 2199 2254 -1060 246 284 0 14 chr1 29985234 29985308 -212679045 - MER91A DNA MER1_type -1 195 123 286 313 117 17 chr1 29985378 29985608 -212678745 + L2 LINE L2 2307 2559 -755 247 212 8 121 chr1 29985612 29985700 -212678653 + MIR SINE MIR 82 178 -84 2085 127 0 0 chr1 29985700 29985991 -212678362 + AluSx SINE Alu 1 291 -21 1784 181 0 10 chr1 29985997 29986290 -212678063 + AluJo SINE Alu 1 290 -22 247 212 8 121 chr1 29986290 29986390 -212677963 + MIR SINE MIR 183 250 -12 1334 156 152 30 chr1 29986408 29986737 -212677616 + AluJb SINE Alu 1 362 0 618 290 145 0 chr1 29986863 29987063 -212677290 + MIR SINE MIR 34 262 0 226 292 69 90 chr1 29987606 29987695 -212676658 + L2 LINE L2 2715 2801 -513 1768 125 86 4 chr1 29987695 29987974 -212676379 + AluSx SINE Alu 1 302 -10 226 292 69 90 chr1 29987974 29988028 -212676325 + L2 LINE L2 2801 2855 -459 2379 89 0 6 chr1 29988157 29988471 -212675882 - AluSx SINE Alu 0 312 1 1297 149 9 18 chr1 29989897 29990119 -212674234 - AluJo SINE Alu -8 304 85 438 286 0 0 chr1 29990160 29990418 -212673935 + (TG)n Simple_repeat Simple_repeat 1 258 0 293 286 0 0 chr1 29990451 29990542 -212673811 + (TG)n Simple_repeat Simple_repeat 1 91 0 2175 96 0 0 chr1 29991324 29991634 -212672719 + AluSg SINE Alu 1 310 0 1812 132 13 42 chr1 29992550 29992861 -212671492 + AluJo SINE Alu 1 302 -10 279 0 0 0 chr1 29993113 29993144 -212671209 + (CA)n Simple_repeat Simple_repeat 2 32 0 622 162 39 78 chr1 29993164 29993279 -212671074 - MIR SINE MIR -3 259 152 2140 119 0 0 chr1 29993279 29993574 -212670779 - AluSq SINE Alu -18 295 1 622 162 39 78 chr1 29993574 29993637 -212670716 - MIR SINE MIR -110 152 88 323 164 14 4 chr1 29993638 29993857 -212670496 + AluJo SINE Alu 1 302 0 896 159 96 0 chr1 29993865 29994022 -212670331 + AluJo SINE Alu 120 291 -21 384 59 0 0 chr1 29994182 29994233 -212670120 + (CA)n Simple_repeat Simple_repeat 2 52 0 334 316 79 55 chr1 29994689 29994848 -212669505 + L1M4c LINE L1 939 1093 -1650 814 165 154 11 chr1 29994848 29994873 -212669480 + MER63A DNA MER1_type 3 23 -1665 222 37 0 0 chr1 29994873 29994900 -212669453 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 814 165 154 11 chr1 29994900 29995056 -212669297 + MER63A DNA MER1_type 23 210 0 334 316 79 55 chr1 29995056 29995212 -212669141 + L1M4c LINE L1 1093 1438 -1305 591 335 69 0 chr1 29995349 29995594 -212668759 - MIR SINE MIR 0 262 1 1629 99 36 0 chr1 29995616 29995716 -212668637 - MER30 DNA MER1_type 0 230 135 2256 89 0 3 chr1 29995716 29996018 -212668335 - AluY SINE Alu -10 301 1 1629 99 36 0 chr1 29996018 29996139 -212668214 - MER30 DNA MER1_type -95 135 1 218 338 13 0 chr1 29996558 29996635 -212667718 + MIR SINE MIR 60 137 -125 227 309 164 40 chr1 29996713 29996865 -212667488 - MIR3 SINE MIR -22 186 16 499 289 98 15 chr1 29997129 29997333 -212667020 + MIR SINE MIR 32 252 -10 2208 115 0 3 chr1 29997791 29998103 -212666250 - AluSx SINE Alu -1 311 1 853 149 117 70 chr1 29999231 29999445 -212664908 - AluJo SINE Alu -8 304 81 407 262 10 0 chr1 29999583 29999686 -212664667 - MIR SINE MIR -65 143 40 22 35 0 0 chr1 29999828 29999857 -212664496 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 29999961 29999989 -212664364 + GC_rich Low_complexity Low_complexity 1 28 0 185 293 13 27 chr1 30001161 30001236 -212663117 - MIR SINE MIR -83 125 52 1680 174 6 19 chr1 30001423 30001734 -212662619 + AluJo SINE Alu 1 307 -5 2506 58 3 0 chr1 30001783 30002093 -212662260 + AluY SINE Alu 1 311 0 225 0 0 0 chr1 30002384 30002409 -212661944 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr1 30002408 30002431 -212661922 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 207 357 132 29 chr1 30002824 30003104 -212661249 + L2 LINE L2 2945 3253 -19 287 316 0 22 chr1 30003113 30003252 -212661101 + (TGAA)n Simple_repeat Simple_repeat 1 136 0 2142 99 3 0 chr1 30003271 30003563 -212660790 + AluSx SINE Alu 1 293 -19 481 317 68 78 chr1 30003572 30004065 -212660288 + L2 LINE L2 2696 3185 -128 779 240 109 13 chr1 30004171 30004258 -212660095 + MIR SINE MIR 2 79 -183 2218 108 24 0 chr1 30004258 30004554 -212659799 - AluSx SINE Alu -9 303 1 779 240 109 13 chr1 30004554 30004695 -212659658 + MIR SINE MIR 79 252 -10 243 0 0 0 chr1 30004700 30004727 -212659626 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 863 149 0 144 chr1 30004804 30004999 -212659354 + FRAM SINE Alu 1 166 -10 279 301 74 59 chr1 30005038 30005241 -212659112 + L2 LINE L2 930 1135 -2179 1547 110 4 22 chr1 30005248 30005476 -212658877 - AluSp SINE Alu -5 308 85 1127 76 0 0 chr1 30005486 30005618 -212658735 - AluSp SINE Alu -181 132 1 292 293 94 26 chr1 30005629 30005820 -212658533 + L2 LINE L2 1168 1371 -1943 238 300 100 29 chr1 30005820 30005960 -212658393 + L2 LINE L2 1560 1709 -1605 2388 96 0 3 chr1 30006064 30006366 -212657987 + AluSq SINE Alu 1 301 -12 2247 127 0 3 chr1 30006366 30006673 -212657680 + AluSq SINE Alu 3 308 -5 541 212 0 17 chr1 30006683 30006801 -212657552 + MLT1B LTR MaLR 207 322 -68 225 204 19 0 chr1 30006815 30006869 -212657484 + L1MC4 LINE L1 7120 7174 -868 1990 135 3 39 chr1 30006875 30007186 -212657167 - AluSx SINE Alu -12 300 1 2095 148 0 3 chr1 30007254 30007557 -212656796 + AluSx SINE Alu 9 310 -2 1002 213 22 70 chr1 30007573 30007681 -212656672 - MLT1A2 LTR MaLR -110 264 152 1743 166 21 10 chr1 30007681 30007970 -212656383 - AluJb SINE Alu -20 292 1 1002 213 22 70 chr1 30007970 30008134 -212656219 - MLT1A2 LTR MaLR -222 152 5 2808 22 0 6 chr1 30008185 30008497 -212655856 + AluY SINE Alu 1 310 -1 2210 79 18 7 chr1 30008654 30008962 -212655391 + AluSg SINE Alu 1 311 0 236 274 0 27 chr1 30008992 30009065 -212655288 + L1MC4 LINE L1 7600 7670 -372 219 331 81 8 chr1 30009095 30009219 -212655134 + L2 LINE L2 3161 3293 -20 313 316 32 51 chr1 30009362 30009520 -212654833 + L3 LINE CR1 1282 1436 -141 346 268 79 8 chr1 30009773 30009892 -212654461 + MIR3 SINE MIR 44 170 -38 435 311 113 0 chr1 30010089 30010266 -212654087 + MIR SINE MIR 51 247 -15 329 133 17 50 chr1 30010399 30010459 -212653894 + L2 LINE L2 3256 3313 0 403 248 109 0 chr1 30010515 30010616 -212653737 - MIR SINE MIR -103 159 48 477 249 185 21 chr1 30012897 30013086 -212651267 - MIR SINE MIR -6 256 37 550 280 89 0 chr1 30013115 30013283 -212651070 + MIR SINE MIR 30 212 -50 414 0 0 0 chr1 30013547 30013593 -212650760 + (CA)n Simple_repeat Simple_repeat 2 47 0 2230 96 0 14 chr1 30013596 30013887 -212650466 - AluSx SINE Alu -25 287 1 271 257 158 10 chr1 30013888 30013989 -212650364 - MIR SINE MIR -112 150 35 395 254 69 47 chr1 30014310 30014488 -212649865 - MIR3 SINE MIR -36 172 11 1746 196 0 0 chr1 30014637 30014918 -212649435 - AluJo SINE Alu -17 295 15 513 270 92 17 chr1 30015609 30015783 -212648570 - MIR SINE MIR 0 262 76 187 333 67 17 chr1 30016122 30016242 -212648111 + L3b LINE CR1 1269 1394 -189 271 229 12 48 chr1 30016575 30016658 -212647695 - MIR SINE MIR -11 251 172 * 773 213 234 60 chr1 30016641 30017159 -212647194 - L2 LINE L2 0 3313 2718 1805 98 53 56 chr1 30017160 30017487 -212646866 - AluSx SINE Alu 0 326 1 2314 110 3 0 chr1 30017500 30017800 -212646553 - AluSp SINE Alu -12 301 1 1196 273 68 47 chr1 30017822 30018219 -212646134 - L1MC4a LINE L1 -748 5398 5011 1880 205 28 15 chr1 30018219 30018610 -212645743 - MSTD LTR MaLR 0 396 1 1196 273 68 47 chr1 30018610 30018733 -212645620 - L1MC4a LINE L1 -1135 5011 4892 2627 61 0 6 chr1 30018733 30019046 -212645307 - AluSp SINE Alu -2 311 1 1196 273 68 47 chr1 30019046 30019599 -212644754 - L1MC4a LINE L1 -1254 4892 4753 2175 108 0 0 chr1 30019600 30019899 -212644454 - AluSx SINE Alu 0 301 3 1222 156 0 70 chr1 30019905 30020149 -212644204 - AluSg/x SINE Alu -1 309 83 764 251 170 115 chr1 30020268 30020719 -212643634 - L2 LINE L2 -1178 2136 1711 2089 113 7 24 chr1 30020719 30020870 -212643483 - AluSx SINE Alu -26 286 134 188 33 0 33 chr1 30020870 30020900 -212643453 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2460 58 7 3 chr1 30020902 30021194 -212643159 - AluSp SINE Alu -20 293 1 2089 113 7 24 chr1 30021194 30021330 -212643023 - AluSx SINE Alu -179 133 1 764 251 170 115 chr1 30021330 30021550 -212642803 - L2 LINE L2 -1603 1711 1428 2015 164 3 0 chr1 30021550 30021848 -212642505 - AluJb SINE Alu -13 299 1 1729 181 7 3 chr1 30021848 30022135 -212642218 - AluJo SINE Alu -18 294 6 4127 93 39 5 chr1 30022576 30023137 -212641216 - LTR19B LTR ERV1 0 580 1 1038 231 179 46 chr1 30023209 30023560 -212640793 + L2 LINE L2 2138 2535 -779 2519 225 78 14 chr1 30023678 30024003 -212640350 + Zaphod DNA AcHobo 39 342 -3689 2369 98 3 0 chr1 30024003 30024308 -212640045 + AluSp SINE Alu 1 306 -7 2519 225 78 14 chr1 30024308 30024698 -212639655 + Zaphod DNA AcHobo 342 800 -3231 1931 174 3 3 chr1 30024710 30025020 -212639333 - AluJb SINE Alu -2 310 1 2356 93 0 10 chr1 30025029 30025340 -212639013 - AluSg SINE Alu 0 310 3 1209 173 48 5 chr1 30025391 30025599 -212638754 - AluJo SINE Alu -12 300 84 817 203 66 16 chr1 30025996 30026178 -212638175 + MER58A DNA MER1_type 1 191 -33 558 262 182 19 chr1 30026886 30027100 -212637253 + MIR SINE MIR 14 262 0 2211 108 14 0 chr1 30027190 30027478 -212636875 - AluSx SINE Alu -20 292 1 1062 133 28 11 chr1 30027478 30027658 -212636695 - THE1B LTR MaLR -181 183 1 10264 66 25 113 chr1 30027658 30028751 -212635602 - THE1B-int LTR MaLR 0 1580 695 2408 103 3 0 chr1 30028751 30029063 -212635290 - AluSp SINE Alu 0 313 1 10264 66 25 113 chr1 30029063 30029702 -212634651 - THE1B-int LTR MaLR -885 695 1 2423 120 19 25 chr1 30029702 30030068 -212634285 - THE1B LTR MaLR 0 364 1 950 128 0 0 chr1 30030082 30030215 -212634138 - FLAM_C SINE Alu 0 133 1 798 256 55 35 chr1 30030217 30030529 -212633824 - LTR24B LTR ERV1 -189 387 70 1832 190 103 22 chr1 30030533 30030981 -212633372 + LTR2B LTR ERV1 7 490 0 3203 212 71 62 chr1 30031046 30031509 -212632844 - MER21A-int LTR ERV1 -1742 4972 4515 2070 143 0 16 chr1 30031509 30031824 -212632529 - AluSx SINE Alu -2 310 1 3203 212 71 62 chr1 30031824 30032419 -212631934 - MER21A-int LTR ERV1 -2199 4515 3927 2425 104 0 0 chr1 30032419 30032728 -212631625 + AluSx SINE Alu 1 309 -3 3203 212 71 62 chr1 30032728 30032900 -212631453 - MER21A-int LTR ERV1 -2787 3927 1194 342 107 27 27 chr1 30032901 30032976 -212631377 + CT-rich Low_complexity Low_complexity 3 77 0 1061 213 8 46 chr1 30035322 30035585 -212628768 - MER21A-int LTR ERV1 -2563 4195 3943 2249 141 48 52 chr1 30035585 30036045 -212628308 - LTR32 LTR ERVL 0 471 14 655 161 18 0 chr1 30036045 30036157 -212628196 - MER21A-int LTR ERV1 -2810 3948 3835 1283 166 94 107 chr1 30036158 30036450 -212627903 - LTR29 LTR ERV1 0 622 337 1439 207 81 0 chr1 30036450 30036721 -212627632 + AluJo SINE Alu 1 293 -19 1283 166 94 107 chr1 30036721 30036897 -212627456 - LTR29 LTR ERV1 -285 337 160 21 0 0 0 chr1 30036960 30036981 -212627372 + AT_rich Low_complexity Low_complexity 1 21 0 4058 186 42 4 chr1 30037041 30037817 -212626536 - MER21A-int LTR ERV1 -3384 807 2 723 163 42 20 chr1 30037833 30038000 -212626353 - MER21A LTR ERV1 -1 891 681 3905 130 39 19 chr1 30038000 30038623 -212625730 - MER41B LTR ERV1 0 635 1 19267 121 19 34 chr1 30038623 30041575 -212622778 - MER41B-int LTR ERV1 0 5946 3053 693 118 20 0 chr1 30041575 30041677 -212622676 + U6 snRNA snRNA 1 104 -3 19267 121 19 34 chr1 30041677 30042128 -212622225 - MER41B-int LTR ERV1 -2893 3053 2596 2415 78 0 0 chr1 30042130 30042423 -212621930 - AluSq SINE Alu -16 297 5 2532 73 7 0 chr1 30042429 30042732 -212621621 - AluSc SINE Alu -3 306 2 3626 127 2 7 chr1 30042751 30042933 -212621420 - MER41B LTR ERV1 -91 544 363 2400 96 0 0 chr1 30042933 30043234 -212621119 - AluSg SINE Alu -9 301 1 213 39 0 0 chr1 30043234 30043260 -212621093 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2101 118 4 0 chr1 30043260 30043539 -212620814 - AluSx SINE Alu -28 284 5 3626 127 2 7 chr1 30043539 30043899 -212620454 - MER41B LTR ERV1 -269 366 3 3285 175 67 24 chr1 30043899 30044241 -212620112 - MER21B LTR ERV1 -177 686 360 1767 168 19 23 chr1 30044241 30044550 -212619803 - AluJb SINE Alu -4 308 1 3285 175 67 24 chr1 30044550 30044865 -212619488 - MER21B LTR ERV1 -503 360 1 2578 68 0 3 chr1 30044936 30045243 -212619110 + AluY SINE Alu 1 306 -5 1261 128 0 0 chr1 30045262 30045449 -212618904 - Tigger3(Golem) DNA MER2_type -3 3026 2840 2285 76 3 54 chr1 30045549 30045866 -212618487 - AluSx SINE Alu -11 301 1 2283 104 7 0 chr1 30045866 30046162 -212618191 - AluSx SINE Alu -13 299 1 549 96 0 0 chr1 30046163 30046246 -212618107 + L1MB5 LINE L1 6086 6168 -6 1153 149 28 142 chr1 30046260 30046422 -212617931 - AluJo SINE Alu -15 287 108 255 31 0 0 chr1 30046422 30046454 -212617899 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2194 110 0 0 chr1 30046454 30046735 -212617618 - AluSx SINE Alu -31 281 1 1153 149 28 142 chr1 30046735 30046894 -212617459 - AluJo SINE Alu -192 110 2 32 0 0 0 chr1 30046927 30046959 -212617394 + AT_rich Low_complexity Low_complexity 1 32 0 567 264 152 39 chr1 30047729 30048059 -212616294 - L2 LINE L2 -493 2821 2455 230 218 18 0 chr1 30048059 30048114 -212616239 - L2 LINE L2 0 3313 3258 291 283 109 51 chr1 30048170 30048308 -212616045 + MIR3 SINE MIR 18 163 -45 192 318 24 12 chr1 30048372 30048457 -212615896 + MIR SINE MIR 59 144 -118 195 234 0 0 chr1 30048807 30048854 -212615499 + L2 LINE L2 2721 2767 -547 329 288 82 29 chr1 30049114 30049284 -212615069 + L2 LINE L2 2832 3010 -262 2524 89 0 3 chr1 30049306 30049619 -212614734 + AluSx SINE Alu 1 312 0 845 149 0 0 chr1 30049751 30049872 -212614481 + AluJo/FLAM SINE Alu 9 129 -183 1935 91 14 22 chr1 30049872 30050148 -212614205 - AluSp SINE Alu -19 294 21 1619 63 0 0 chr1 30050265 30050454 -212613899 - AluSg/x SINE Alu -12 300 112 662 257 6 17 chr1 30050463 30050642 -212613711 + MARNA DNA Mariner 224 400 -186 2269 112 0 7 chr1 30050718 30051023 -212613330 + AluSx SINE Alu 1 303 -9 2018 137 7 7 chr1 30051147 30051440 -212612913 + AluSx SINE Alu 1 293 -19 204 244 0 0 chr1 30052069 30052110 -212612243 - MIR SINE MIR 0 262 222 311 298 93 19 chr1 30052436 30052641 -212611712 - L2 LINE L2 -223 3049 2830 1009 181 23 6 chr1 30052765 30052936 -212611417 + FAM SINE Alu 2 175 0 217 184 41 0 chr1 30053184 30053233 -212611120 - MIR3 SINE MIR -52 156 106 1417 170 18 43 chr1 30053766 30054048 -212610305 + AluJo SINE Alu 7 281 -31 273 344 10 0 chr1 30054331 30054427 -212609926 + MIR SINE MIR 16 112 -150 2154 95 0 13 chr1 30054427 30054732 -212609621 + AluSx SINE Alu 1 301 -11 310 261 0 0 chr1 30054762 30054827 -212609526 + MIR SINE MIR 90 154 -108 219 36 0 0 chr1 30055344 30055372 -212608981 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1838 168 96 3 chr1 30055372 30055705 -212608648 - MSTA LTR MaLR -64 364 1 661 195 50 48 chr1 30056005 30056059 -212608294 - MER66-int LTR ERV1 -2603 4073 4021 1596 179 3 3 chr1 30056059 30056350 -212608003 - AluJo SINE Alu -21 291 1 661 195 50 48 chr1 30056350 30056608 -212607745 - MER66-int LTR ERV1 -2655 4021 1889 1129 186 4 26 chr1 30056674 30056900 -212607453 - AluJb SINE Alu -5 307 87 1522 118 156 7 chr1 30056901 30057171 -212607182 - AluSq SINE Alu -2 311 2 1581 195 10 0 chr1 30057223 30057521 -212606832 - AluJo SINE Alu -9 303 3 1047 148 22 181 chr1 30057523 30057926 -212606427 - AluYb8 SINE Alu 0 318 1 310 90 11 214 chr1 30057926 30057963 -212606390 + MSTB LTR MaLR 356 399 -27 1931 112 4 0 chr1 30057963 30058232 -212606121 - AluSc SINE Alu -39 270 1 2257 101 0 0 chr1 30058237 30058544 -212605809 - AluSc SINE Alu -2 307 1 310 90 11 214 chr1 30058544 30058589 -212605764 + MSTB LTR MaLR 403 426 0 3161 166 2 2 chr1 30058589 30059124 -212605229 + MSTB-int LTR MaLR 1 535 -1116 377 82 16 0 chr1 30059132 30059193 -212605160 - L1PB2 LINE L1 0 6151 6090 23 0 0 0 chr1 30059705 30059728 -212604625 + AT_rich Low_complexity Low_complexity 1 23 0 260 279 82 0 chr1 30059756 30059817 -212604536 - MIR SINE MIR -114 94 29 316 234 139 3 chr1 30059881 30060006 -212604347 - MIR SINE MIR -69 139 46 274 137 39 0 chr1 30060290 30060341 -212604012 - L1M4 LINE L1 -1131 5015 4963 2098 113 7 7 chr1 30060402 30060704 -212603649 - AluSg SINE Alu -8 302 1 1303 157 29 9 chr1 30060725 30060935 -212603418 - MER58A DNA MER1_type 0 224 11 642 166 17 9 chr1 30060937 30060960 -212603393 + L1P5 LINE L1 5653 5674 -477 2011 132 0 3 chr1 30060960 30061256 -212603097 + AluSx SINE Alu 1 295 -17 2284 91 0 7 chr1 30061258 30061566 -212602787 + AluSc SINE Alu 1 306 -3 642 166 17 9 chr1 30061566 30061671 -212602682 + L1P5 LINE L1 5674 5784 -367 2081 111 0 26 chr1 30061672 30061979 -212602374 + AluSg1 SINE Alu 1 299 -10 1063 132 25 0 chr1 30061980 30062139 -212602214 + AluJb SINE Alu 135 297 -15 938 245 122 15 chr1 30063528 30063863 -212600490 + L2 LINE L2 2170 2540 -774 992 206 34 22 chr1 30063864 30063893 -212600460 + L1MB4 LINE L1 5060 5087 -1059 1802 146 20 3 chr1 30063893 30064194 -212600159 - AluSx SINE Alu -6 306 1 992 206 34 22 chr1 30064194 30064431 -212599922 + L1MB4 LINE L1 5087 5329 -817 879 151 0 26 chr1 30064431 30064583 -212599770 + FRAM SINE Alu 13 160 -16 740 107 0 126 chr1 30064640 30064799 -212599554 + MLT1A1 LTR MaLR 227 365 0 1356 142 83 35 chr1 30064799 30065087 -212599266 + L1MB4 LINE L1 5729 6030 -150 1604 128 3 84 chr1 30065087 30065407 -212598946 - AluJb SINE Alu -17 295 2 879 300 47 25 chr1 30065469 30065959 -212598394 - L1M4 LINE L1 -893 5253 4753 2040 108 0 0 chr1 30065960 30066259 -212598094 - AluSx SINE Alu 0 301 3 1080 138 0 22 chr1 30066268 30066449 -212597904 - AluSc SINE Alu -4 305 129 2140 112 3 0 chr1 30066455 30066758 -212597595 - AluSx SINE Alu -8 304 1 455 382 0 0 chr1 30067128 30067412 -212596941 + C-rich Low_complexity Low_complexity 1 284 0 454 211 19 93 chr1 30067809 30067970 -212596383 + MIR SINE MIR 85 233 -29 2860 173 55 57 chr1 30068133 30068458 -212595895 - MER21B LTR ERV1 -61 802 478 1683 180 0 0 chr1 30068458 30068753 -212595600 - AluJb SINE Alu -17 295 1 2860 173 55 57 chr1 30068753 30069148 -212595205 - MER21B LTR ERV1 -385 478 1 648 244 39 33 chr1 30069350 30069530 -212594823 - MIR SINE MIR -45 217 37 2299 69 0 20 chr1 30069546 30069852 -212594501 - AluY SINE Alu -11 300 1 229 241 103 17 chr1 30069986 30070044 -212594309 - MIR SINE MIR -61 147 85 306 320 10 10 chr1 30070724 30070827 -212593526 - MIR SINE MIR 0 262 160 2405 310 89 16 chr1 30070876 30071609 -212592744 - ERVL LTR ERVL -1125 4639 3802 207 0 0 0 chr1 30071609 30071632 -212592721 + (TC)n Simple_repeat Simple_repeat 2 24 0 2405 310 89 16 chr1 30071632 30071966 -212592387 - ERVL LTR ERVL -1962 3802 3494 2121 109 6 10 chr1 30071993 30072306 -212592047 - AluSx SINE Alu 0 312 1 1618 186 0 3 chr1 30072336 30072626 -212591727 - AluJo SINE Alu -23 289 1 794 119 0 0 chr1 30072868 30072977 -212591376 - MER7A DNA MER2_type -239 107 1 207 204 0 0 chr1 30072977 30073021 -212591332 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 264 170 43 0 chr1 30073023 30073070 -212591283 + MLT2D LTR ERVL 366 414 0 330 270 34 22 chr1 30073073 30073162 -212591191 - ERVL LTR ERVL -3486 2278 2189 * 660 291 67 32 chr1 30073148 30073491 -212590862 - ERVL LTR ERVL -2909 2087 1733 666 125 80 0 chr1 30073497 30073609 -212590744 + FRAM SINE Alu 44 164 -12 27 0 0 0 chr1 30073682 30073709 -212590644 + AT_rich Low_complexity Low_complexity 1 27 0 346 358 91 30 chr1 30073753 30074111 -212590242 - ERVL LTR ERVL -3478 1518 1127 2056 77 0 7 chr1 30074111 30074385 -212589968 + AluSg SINE Alu 39 310 0 346 358 91 30 chr1 30074385 30074467 -212589886 - ERVL LTR ERVL -3869 1127 1051 344 236 107 18 chr1 30074481 30074595 -212589758 - MLT1G1 LTR MaLR 0 595 426 361 184 193 55 chr1 30074596 30074705 -212589648 - MLT1H LTR MaLR -423 126 3 414 351 84 50 chr1 30074709 30075304 -212589049 - ERVL LTR ERVL -3957 1039 425 2426 87 0 0 chr1 30075306 30075618 -212588735 - AluSx SINE Alu 0 312 1 399 185 423 0 chr1 30076158 30076288 -212588065 - L2 LINE L2 -526 2788 2604 2166 251 85 26 chr1 30076290 30076903 -212587450 - MLT2F LTR ERVL -8 655 7 262 241 17 0 chr1 30076910 30076968 -212587385 - L2 LINE L2 -704 2610 2552 2178 132 23 94 chr1 30076972 30077258 -212587095 + MER65A LTR ERV1 1 306 -139 2305 88 0 0 chr1 30077258 30077565 -212586788 + AluY SINE Alu 1 307 -4 2178 132 23 94 chr1 30077565 30077623 -212586730 + MER65A LTR ERV1 306 367 -78 2074 48 0 0 chr1 30077623 30077894 -212586459 + AluY SINE Alu 37 307 0 2178 132 23 94 chr1 30077894 30078026 -212586327 + MER65A LTR ERV1 367 445 0 1900 214 88 68 chr1 30078032 30078718 -212585635 + MER65A-int LTR ERV1 11 709 -4162 425 211 72 68 chr1 30078718 30079187 -212585166 + MER65-int LTR ERV1 1563 2028 -2843 2251 112 0 0 chr1 30079187 30079499 -212584854 + AluSq SINE Alu 1 312 -1 425 211 72 68 chr1 30079499 30079539 -212584814 + MER65-int LTR ERV1 2028 2508 -2363 1234 99 33 11 chr1 30079582 30079785 -212584568 + AluSg/x SINE Alu 100 306 0 21 0 0 0 chr1 30079826 30079847 -212584506 + AT_rich Low_complexity Low_complexity 1 21 0 1172 106 0 119 chr1 30079847 30080073 -212584280 + AluSq SINE Alu 1 199 -114 268 274 71 12 chr1 30080358 30080442 -212583911 - ERVL LTR ERVL -2549 3215 3127 2212 64 0 0 chr1 30080481 30080791 -212583562 - AluY SINE Alu 0 310 1 2846 142 172 75 chr1 30080795 30080904 -212583449 - MER21B LTR ERV1 -23 840 743 2300 81 3 3 chr1 30080904 30081213 -212583140 - AluSp SINE Alu -4 309 1 2846 142 172 75 chr1 30081213 30081243 -212583110 - MER21B LTR ERV1 -120 743 717 884 75 0 0 chr1 30081243 30081350 -212583003 - U6 snRNA snRNA 0 107 1 1859 122 39 0 chr1 30081350 30081636 -212582717 - AluJb SINE Alu -15 297 1 2846 142 172 75 chr1 30081636 30082175 -212582178 - MER21B LTR ERV1 -145 718 94 762 212 0 0 chr1 30082175 30082307 -212582046 + FLAM_A SINE Alu 6 137 -5 402 171 71 0 chr1 30082307 30082377 -212581976 - MER21B LTR ERV1 -755 108 34 587 165 0 0 chr1 30082388 30082479 -212581874 - MER21B LTR ERV1 -485 378 288 2060 122 14 0 chr1 30082536 30082830 -212581523 - AluSx SINE Alu -14 298 1 854 79 0 0 chr1 30082856 30082970 -212581383 - L1PA8 LINE L1 -1 6171 6058 2053 84 47 7 chr1 30083005 30083304 -212581049 + AluY SINE Alu 1 311 0 803 131 7 15 chr1 30083324 30083461 -212580892 + AluSg/x SINE Alu 165 300 -12 1248 117 0 0 chr1 30083479 30083650 -212580703 + AluJb SINE Alu 132 302 -10 5340 121 47 87 chr1 30083669 30084691 -212579662 + MER21-int LTR ERV1 3160 4140 -51 1043 128 0 0 chr1 30084733 30084882 -212579471 - AluJb SINE Alu -32 280 132 244 247 11 90 chr1 30085024 30085113 -212579240 - L2 LINE L2 -69 3244 3163 1782 178 0 0 chr1 30085643 30085947 -212578406 - AluJo SINE Alu -8 304 1 372 147 0 88 chr1 30086135 30086203 -212578150 - AluSg/x SINE Alu -106 194 133 1703 165 13 0 chr1 30086205 30086508 -212577845 - AluSx SINE Alu 0 312 6 317 331 23 15 chr1 30086526 30086656 -212577697 + L1MEc LINE L1 2240 2370 -4026 303 213 117 43 chr1 30086694 30086788 -212577565 + MIR SINE MIR 50 150 -112 2090 92 7 3 chr1 30087427 30087722 -212576631 - AluSg SINE Alu -14 296 1 2013 97 3 24 chr1 30088128 30088453 -212575900 + AluSx SINE Alu 1 319 0 198 0 0 0 chr1 30088752 30088774 -212575579 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1906 126 14 3 chr1 30088774 30089060 -212575293 + AluSc SINE Alu 1 289 -20 2328 74 3 7 chr1 30089076 30089385 -212574968 - AluY SINE Alu -1 310 3 39 0 0 0 chr1 30089387 30089426 -212574927 + AT_rich Low_complexity Low_complexity 1 39 0 1328 180 20 65 chr1 30089746 30090052 -212574301 + AluJo SINE Alu 1 292 -10 818 191 12 24 chr1 30090141 30090309 -212574044 - MER4D LTR ERV1 -8 895 730 1224 161 134 27 chr1 30090409 30090670 -212573683 - AluJb SINE Alu -15 297 9 2193 92 7 0 chr1 30090684 30090976 -212573377 - AluSq SINE Alu -19 294 1 350 257 14 0 chr1 30090976 30091050 -212573303 - LTR39 LTR ERV1 -306 477 403 2016 122 7 0 chr1 30091050 30091346 -212573007 - AluSx SINE Alu -10 302 5 1745 126 60 0 chr1 30091407 30091676 -212572677 - MER49 LTR ERV1 -638 285 1 566 165 10 0 chr1 30091935 30092032 -212572321 + MSTB2 LTR MaLR 360 457 0 212 304 130 0 chr1 30092044 30092159 -212572194 + L2 LINE L2 2633 2762 -552 1089 209 96 10 chr1 30092373 30092665 -212571688 + L1MC5 LINE L1 7260 7576 -385 189 0 0 0 chr1 30092673 30092694 -212571659 + (A)n Simple_repeat Simple_repeat 1 21 0 1236 88 6 0 chr1 30092767 30092938 -212571415 - AluSg/x SINE Alu -3 309 138 329 242 50 50 chr1 30092939 30092993 -212571360 + L1MC5 LINE L1 7647 7700 -261 2292 93 3 0 chr1 30092993 30093305 -212571048 + AluSp SINE Alu 1 313 0 329 242 50 50 chr1 30093305 30093370 -212570983 + L1MC5 LINE L1 7699 7766 -195 1341 196 0 39 chr1 30093386 30093671 -212570682 + AluJo SINE Alu 1 274 -38 462 212 20 0 chr1 30093832 30093931 -212570422 + L1MC5 LINE L1 7805 7905 -56 224 347 0 0 chr1 30093968 30094040 -212570313 + L2 LINE L2 3025 3096 -176 768 321 97 16 chr1 30094703 30095086 -212569267 - L2 LINE L2 -4 3309 2896 21 0 0 0 chr1 30095261 30095282 -212569071 + AT_rich Low_complexity Low_complexity 1 21 0 201 209 121 44 chr1 30095363 30095454 -212568899 - MIR SINE MIR -88 120 23 246 343 214 14 chr1 30095993 30096133 -212568220 - MIR SINE MIR -6 256 89 2130 125 3 3 chr1 30096599 30096911 -212567442 + AluSx SINE Alu 1 312 0 259 225 28 0 chr1 30098075 30098146 -212566207 + (TA)n Simple_repeat Simple_repeat 1 73 0 227 349 51 23 chr1 30098209 30098424 -212565929 - L2 LINE L2 -528 2786 2566 2319 85 3 0 chr1 30098807 30099113 -212565240 - AluSp SINE Alu -6 307 1 511 164 0 0 chr1 30099311 30099384 -212564969 - AluS SINE Alu -235 77 5 1724 147 17 10 chr1 30099391 30099683 -212564670 - AluSx SINE Alu -18 294 1 1166 141 11 159 chr1 30099901 30100097 -212564256 + MER8 DNA MER2_type 4 227 -12 2109 115 0 3 chr1 30100097 30100393 -212563960 + AluSg SINE Alu 1 295 -15 1166 141 11 159 chr1 30100393 30100416 -212563937 + MER8 DNA MER2_type 227 180 -59 2129 97 0 7 chr1 30100416 30100727 -212563626 + AluSx SINE Alu 1 309 0 1166 141 11 159 chr1 30100727 30100780 -212563573 + MER8 DNA MER2_type 179 238 -1 877 157 16 32 chr1 30100964 30101138 -212563215 + MER69A DNA AcHobo 1 169 -8 1725 158 3 10 chr1 30101209 30101506 -212562847 - AluJb SINE Alu -14 298 4 302 280 13 0 chr1 30101707 30101782 -212562571 - MIR SINE MIR -66 196 121 349 154 22 199 chr1 30101877 30101917 -212562436 - MER81 DNA DNA -1 113 68 2241 86 3 0 chr1 30101917 30102218 -212562135 - AluY SINE Alu -9 302 1 349 154 22 199 chr1 30102218 30102313 -212562040 - MER81 DNA DNA -46 68 2 275 205 121 12 chr1 30102415 30102487 -212561866 - MIR SINE MIR -166 96 13 769 163 8 0 chr1 30102487 30102610 -212561743 - FLAM_C SINE Alu -9 124 1 4383 45 13 2 chr1 30102737 30103274 -212561079 + L1PA4 LINE L1 5612 6154 -1 2010 74 24 34 chr1 30103511 30103829 -212560524 + AluY SINE Alu 1 311 0 310 255 88 0 chr1 30104387 30104489 -212559864 - MIR3 SINE MIR -8 200 90 418 256 63 63 chr1 30104523 30104563 -212559790 - MIR SINE MIR -48 214 175 2548 151 58 13 chr1 30104563 30105028 -212559325 + MER66B LTR ERV1 1 486 0 418 256 63 63 chr1 30105028 30105178 -212559175 - MIR SINE MIR -86 176 24 214 309 191 7 chr1 30105186 30105305 -212559048 + MIR SINE MIR 17 155 -99 1938 144 67 9 chr1 30105389 30105735 -212558618 + MER47A DNA MER2_type 1 366 0 401 258 117 17 chr1 30105837 30105957 -212558396 + MIR SINE MIR 119 250 -12 958 248 33 33 chr1 30106114 30106314 -212558039 - AluJo SINE Alu 0 302 103 1548 148 4 12 chr1 30106314 30106570 -212557783 + AluJb SINE Alu 7 260 -52 314 0 49 0 chr1 30106572 30106613 -212557740 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 958 248 33 33 chr1 30106613 30106711 -212557642 - AluJo SINE Alu -199 103 1 292 280 124 6 chr1 30107232 30107397 -212556956 - MIR SINE MIR -62 146 14 261 345 5 0 chr1 30107773 30107880 -212556473 - MIR SINE MIR -89 119 7 295 290 43 11 chr1 30108044 30108137 -212556216 + MIR SINE MIR 112 207 -55 941 252 84 29 chr1 30108197 30108578 -212555775 - L2 LINE L2 -2 3311 2910 348 164 0 0 chr1 30108758 30108825 -212555528 + (CA)n Simple_repeat Simple_repeat 1 67 0 1757 117 37 40 chr1 30109170 30109373 -212554980 - AluSx SINE Alu -14 298 95 2150 80 40 0 chr1 30109373 30109672 -212554681 - AluSp SINE Alu -2 311 1 1757 117 37 40 chr1 30109672 30109767 -212554586 - AluSx SINE Alu -217 95 1 328 226 19 66 chr1 30109905 30109997 -212554356 + Charlie7 DNA MER1_type 1 89 -2523 822 142 0 30 chr1 30109997 30110131 -212554222 - FLAM_C SINE Alu -3 130 1 328 226 19 66 chr1 30110131 30110144 -212554209 + Charlie7 DNA MER1_type 89 101 -2511 2112 104 3 0 chr1 30110931 30111228 -212553125 + AluY SINE Alu 14 311 0 2269 82 0 0 chr1 30111585 30111877 -212552476 - AluY SINE Alu -19 292 1 423 308 82 19 chr1 30112161 30112320 -212552033 - MIR SINE MIR -47 215 47 197 204 93 0 chr1 30113660 30113714 -212550639 - MIR SINE MIR -88 174 116 1666 153 7 17 chr1 30114175 30114462 -212549891 - AluJb SINE Alu -16 296 13 2150 98 0 3 chr1 30114475 30114772 -212549581 - AluSx SINE Alu -16 296 1 825 282 67 30 chr1 30115651 30116052 -212548301 + L2 LINE L2 1739 2154 -1160 1407 116 0 0 chr1 30116095 30116293 -212548060 + AluSg/x SINE Alu 93 290 -22 2340 52 0 58 chr1 30116294 30116621 -212547732 + AluY SINE Alu 1 308 -3 534 266 123 32 chr1 30116648 30117052 -212547301 + L2 LINE L2 2767 3295 -18 1239 161 118 18 chr1 30117052 30117331 -212547022 - AluJo SINE Alu -5 307 1 1145 88 0 35 chr1 30118853 30119024 -212545329 - AluSg/x SINE Alu -11 301 137 305 252 222 22 chr1 30119047 30119277 -212545076 + L1ME4a LINE L1 5611 5886 -235 1953 109 0 51 chr1 30119408 30119720 -212544633 - AluSc SINE Alu -13 296 1 798 164 0 0 chr1 30119802 30119930 -212544423 + FLAM_C SINE Alu 14 141 -2 1140 180 0 5 chr1 30119954 30120154 -212544199 + AluSx SINE Alu 1 199 -113 502 86 29 0 chr1 30120154 30120224 -212544129 + AluSq/x SINE Alu 67 138 -175 473 98 0 0 chr1 30120324 30120385 -212543968 - Alu SINE Alu -256 62 2 2011 132 0 3 chr1 30120388 30120684 -212543669 - AluSx SINE Alu -17 295 1 1303 157 29 9 chr1 30120709 30120919 -212543434 + MER58A DNA MER1_type 11 224 0 330 103 56 95 chr1 30120917 30120940 -212543413 - Zaphod DNA AcHobo -3041 990 968 * 2219 113 0 0 chr1 30120940 30121242 -212543111 + AluSx SINE Alu 1 302 -10 330 103 56 95 chr1 30121242 30121344 -212543009 - Zaphod DNA AcHobo -3063 968 870 742 176 0 21 chr1 30121349 30121491 -212542862 - FLAM_C SINE Alu -3 140 2 905 194 6 0 chr1 30121534 30121704 -212542649 + AluJo SINE Alu 121 291 -21 2292 83 3 6 chr1 30121714 30122026 -212542327 + AluY SINE Alu 1 311 0 1753 177 3 3 chr1 30122035 30122345 -212542008 + AluJb SINE Alu 1 310 -2 2732 221 78 14 chr1 30122357 30122747 -212541606 - Zaphod DNA AcHobo -3231 800 436 2221 98 3 0 chr1 30122747 30123052 -212541301 - AluSp SINE Alu -7 306 1 2732 221 78 14 chr1 30123052 30123377 -212540976 - Zaphod DNA AcHobo -3595 436 39 1042 231 179 46 chr1 30123495 30123846 -212540507 - L2 LINE L2 -779 2535 2138 228 259 24 94 chr1 30123900 30123918 -212540435 + MLT1J2 LTR MaLR 284 302 -148 4133 91 39 5 chr1 30123918 30124479 -212539874 + LTR19B LTR ERV1 1 580 0 228 259 24 94 chr1 30124479 30124630 -212539723 + MLT1J2 LTR MaLR 302 441 -9 1582 181 7 3 chr1 30124920 30125208 -212539145 + AluJo SINE Alu 6 294 -18 1864 164 3 0 chr1 30125208 30125505 -212538848 + AluJb SINE Alu 1 299 -13 1844 230 160 94 chr1 30125505 30125725 -212538628 + L2 LINE L2 1428 1632 -1682 1967 117 7 23 chr1 30125725 30125861 -212538492 + AluSx SINE Alu 1 138 -174 2319 58 7 3 chr1 30125861 30126185 -212538168 + AluSp SINE Alu 1 325 0 1967 117 7 23 chr1 30126185 30126344 -212538009 + AluSx SINE Alu 138 294 -18 1844 230 160 94 chr1 30126344 30126809 -212537544 + L2 LINE L2 1632 2065 -1249 1184 214 173 18 chr1 30126809 30127150 -212537203 + MSTD LTR MaLR 1 394 -2 1844 230 160 94 chr1 30127150 30127507 -212536846 + L2 LINE L2 2065 2540 -774 999 202 34 22 chr1 30127508 30127537 -212536816 + L1MB4 LINE L1 5060 5087 -1059 1926 129 20 3 chr1 30127537 30127839 -212536514 - AluSx SINE Alu -5 307 1 999 202 34 22 chr1 30127839 30128076 -212536277 + L1MB4 LINE L1 5087 5329 -817 886 150 0 26 chr1 30128076 30128229 -212536124 + FRAM SINE Alu 13 161 -15 740 107 0 126 chr1 30128286 30128445 -212535908 + MLT1A1 LTR MaLR 227 365 0 1379 169 79 48 chr1 30128445 30128733 -212535620 + L1MB4 LINE L1 5729 6022 -144 1475 137 0 87 chr1 30128733 30129033 -212535320 - AluJb SINE Alu -17 295 22 1379 169 79 48 chr1 30129033 30129182 -212535171 + L1MB4 LINE L1 6022 6165 -1 214 195 91 13 chr1 30129190 30129267 -212535086 + L2 LINE L2 3083 3165 -148 261 247 0 0 chr1 30129271 30129344 -212535009 + (TA)n Simple_repeat Simple_repeat 1 73 0 527 263 38 15 chr1 30129345 30129478 -212534875 + L2 LINE L2 3137 3272 0 2131 107 13 7 chr1 30129515 30129823 -212534530 + AluSg SINE Alu 1 310 0 1561 278 118 58 chr1 30129841 30130368 -212533985 + L2 LINE L2 2153 2647 -666 850 152 0 8 chr1 30130368 30130500 -212533853 + FLAM_C SINE Alu 1 131 -2 1561 278 118 58 chr1 30130500 30130961 -212533392 + L2 LINE L2 2647 3079 -234 186 43 0 0 chr1 30130961 30130984 -212533369 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1414 142 110 0 chr1 30130988 30131242 -212533111 - AluJo SINE Alu -30 282 1 1570 184 10 0 chr1 30131252 30131545 -212532808 - AluJb SINE Alu -16 296 1 1561 278 118 58 chr1 30131545 30131634 -212532719 + L2 LINE L2 3089 3312 -1 399 173 34 64 chr1 30131645 30131779 -212532574 + AluJ/FLAM SINE Alu 1 69 -233 1823 131 0 4 chr1 30131779 30132053 -212532300 + AluSx SINE Alu 21 293 -19 1964 96 0 76 chr1 30132055 30132369 -212531984 + AluSq SINE Alu 1 290 -23 37 0 0 0 chr1 30132371 30132408 -212531945 + AT_rich Low_complexity Low_complexity 1 37 0 305 261 31 0 chr1 30132712 30132777 -212531576 - MIR SINE MIR -160 102 36 2110 113 3 7 chr1 30132787 30133097 -212531256 - AluSx SINE Alu -3 309 1 1490 164 7 44 chr1 30133135 30133270 -212531083 + AluJb SINE Alu 1 139 -173 2243 94 0 0 chr1 30133270 30133569 -212530784 + AluSg SINE Alu 1 299 -11 1490 164 7 44 chr1 30133569 30133731 -212530622 + AluJb SINE Alu 139 287 -25 882 113 22 108 chr1 30133748 30133829 -212530524 - L1MB5 LINE L1 -9 6165 6079 2145 104 7 0 chr1 30133829 30134127 -212530226 + AluSx SINE Alu 1 300 -12 2157 75 3 53 chr1 30134127 30134445 -212529908 + AluSx SINE Alu 1 303 -9 882 113 22 108 chr1 30134445 30134547 -212529806 - L1MB5 LINE L1 -93 6081 5997 1620 142 0 66 chr1 30134582 30134791 -212529562 - AluJb SINE Alu -26 286 102 2125 84 3 36 chr1 30134791 30135100 -212529253 - AluSx SINE Alu -13 299 1 1620 142 0 66 chr1 30135100 30135192 -212529161 - AluJb SINE Alu -210 102 5 303 333 36 0 chr1 30135225 30135336 -212529017 - MIR SINE MIR -62 146 32 206 213 0 0 chr1 30136486 30136533 -212527820 + (CCCCG)n Simple_repeat Simple_repeat 2 48 0 22 70 0 0 chr1 30136594 30136637 -212527716 + GC_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr1 30137662 30137685 -212526668 + AT_rich Low_complexity Low_complexity 1 23 0 260 279 82 0 chr1 30137713 30137774 -212526579 - MIR SINE MIR -114 94 29 316 234 139 3 chr1 30137838 30137963 -212526390 - MIR SINE MIR -69 139 46 274 137 39 0 chr1 30138247 30138298 -212526055 - L1M4 LINE L1 -1131 5015 4963 2148 105 7 7 chr1 30138359 30138664 -212525689 - AluSg SINE Alu -5 305 1 1618 179 3 3 chr1 30138918 30139209 -212525144 - AluJb SINE Alu -19 293 3 2065 121 0 7 chr1 30139238 30139536 -212524817 + AluSx SINE Alu 1 296 -16 1609 169 3 10 chr1 30139766 30140068 -212524285 - AluJb SINE Alu -12 300 1 387 239 70 94 chr1 30140080 30140281 -212524072 - L1MC4 LINE L1 -17 8025 7830 831 220 34 34 chr1 30140329 30140657 -212523696 - L1ME2 LINE L1 -11 6153 4961 247 226 0 16 chr1 30140655 30140717 -212523636 + L1P LINE L1 4950 5010 -1136 * 2242 103 3 0 chr1 30140732 30141044 -212523309 - AluSp SINE Alu 0 313 1 27 0 0 0 chr1 30141255 30141282 -212523071 + AT_rich Low_complexity Low_complexity 1 27 0 634 206 113 25 chr1 30141376 30141536 -212522817 - AluJo SINE Alu -14 298 125 2233 94 10 7 chr1 30141757 30142064 -212522289 - AluSq SINE Alu -5 308 1 2234 92 0 0 chr1 30142387 30142680 -212521673 - AluSq SINE Alu -20 293 1 1880 152 7 10 chr1 30142706 30143009 -212521344 + AluSx SINE Alu 1 302 -10 2057 111 19 7 chr1 30143482 30143789 -212520564 - AluSx SINE Alu 0 312 2 186 43 0 0 chr1 30144043 30144066 -212520287 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2076 95 20 7 chr1 30144124 30144430 -212519923 + AluSx SINE Alu 1 310 -2 2190 96 0 7 chr1 30144824 30145125 -212519228 + AluSc SINE Alu 1 299 -10 896 258 191 15 chr1 30145497 30146006 -212518347 + L2 LINE L2 2710 3311 -2 328 304 99 19 chr1 30146257 30146418 -212517935 + MIR SINE MIR 77 250 -12 2047 119 0 7 chr1 30146608 30146893 -212517460 + AluSg SINE Alu 11 293 -17 723 264 109 0 chr1 30146905 30147098 -212517255 + MIR SINE MIR 32 245 -17 1920 95 0 115 chr1 30147147 30147485 -212516868 - AluSx SINE Alu -13 299 1 2178 108 3 9 chr1 30147492 30147807 -212516546 - AluSp SINE Alu 0 313 1 1516 170 6 61 chr1 30147992 30148128 -212516225 + AluJo SINE Alu 2 144 -168 2134 109 0 31 chr1 30148128 30148450 -212515903 + AluSx SINE Alu 1 312 0 1516 170 6 61 chr1 30148450 30148625 -212515728 + AluJo SINE Alu 144 296 -16 743 154 24 24 chr1 30148637 30148760 -212515593 + FLAM_A SINE Alu 1 123 -10 2008 94 47 0 chr1 30148768 30149072 -212515281 + AluSg SINE Alu 1 317 0 964 299 116 24 chr1 30149150 30149620 -212514733 - L2 LINE L2 -10 3303 2791 1976 132 0 3 chr1 30150063 30150351 -212514002 + AluJb SINE Alu 1 287 -25 2311 57 17 27 chr1 30151407 30151703 -212512650 + AluSp SINE Alu 3 295 -18 1497 160 149 4 chr1 30151752 30152014 -212512339 - AluJb SINE Alu -8 304 5 2188 120 0 10 chr1 30152156 30152455 -212511898 + AluSx SINE Alu 1 296 -16 191 303 245 5 chr1 30152455 30152663 -212511690 - L2 LINE L2 -584 2730 2473 239 356 87 20 chr1 30152863 30153012 -212511341 + MER91A DNA MER1_type 18 176 -20 1321 98 38 87 chr1 30153140 30153337 -212511016 + L1MA8 LINE L1 5986 6168 -123 2219 105 0 16 chr1 30153337 30153641 -212510712 + AluSg SINE Alu 1 299 -11 1321 98 38 87 chr1 30153641 30153709 -212510644 + L1MA8 LINE L1 6168 6238 -53 1368 188 12 23 chr1 30153722 30153978 -212510375 - AluJb SINE Alu -25 287 35 2005 151 3 3 chr1 30154041 30154339 -212510014 + AluJb SINE Alu 1 298 -14 918 195 24 18 chr1 30154349 30154518 -212509835 + FRAM SINE Alu 1 166 -10 2269 93 0 0 chr1 30154671 30154985 -212509368 - AluSc SINE Alu 0 314 1 292 303 17 4 chr1 30154996 30155174 -212509179 - MIR SINE MIR -13 249 7 423 262 16 0 chr1 30155875 30156001 -212508352 + MIR SINE MIR 122 249 -13 514 294 23 65 chr1 30156122 30156384 -212507969 - L2 LINE L2 -97 3175 2925 355 307 134 36 chr1 30156527 30156915 -212507438 - L2 LINE L2 -557 2757 2332 2163 121 0 19 chr1 30156999 30157312 -212507041 + AluSg SINE Alu 1 307 -3 1586 175 10 21 chr1 30157365 30157656 -212506697 + AluJo SINE Alu 13 300 -12 343 227 27 64 chr1 30157657 30157767 -212506586 - MER5A DNA MER1_type -56 133 28 320 257 30 0 chr1 30157923 30158024 -212506329 - L2 LINE L2 -1297 2017 1914 2168 113 7 16 chr1 30158193 30158502 -212505851 + AluSx SINE Alu 1 306 -6 268 258 71 57 chr1 30158505 30158674 -212505679 + MIR SINE MIR 31 206 -56 2609 56 3 0 chr1 30158679 30158982 -212505371 - AluY SINE Alu -7 304 1 2194 80 0 32 chr1 30159028 30159339 -212505014 - AluY SINE Alu -10 301 1 1865 144 43 0 chr1 30159936 30160214 -212504139 - AluSx SINE Alu -22 290 1 1642 152 82 4 chr1 30161445 30161715 -212502638 + AluJb SINE Alu 1 291 -21 2065 156 10 0 chr1 30162053 30162360 -212501993 - AluJb SINE Alu -2 310 1 1724 139 110 0 chr1 30162360 30162632 -212501721 - AluJo SINE Alu -9 303 1 436 320 41 6 chr1 30163185 30163357 -212500996 + L3 LINE CR1 1293 1470 -107 2406 75 0 53 chr1 30163436 30163756 -212500597 + AluSp SINE Alu 1 303 -10 2600 68 3 0 chr1 30164655 30164964 -212499389 - AluSp SINE Alu -3 310 1 1718 190 3 7 chr1 30166128 30166433 -212497920 - AluJo SINE Alu -8 304 1 1843 120 105 0 chr1 30166873 30167149 -212497204 - AluSx SINE Alu -7 305 1 1924 162 3 7 chr1 30167336 30167639 -212496714 + AluJb SINE Alu 1 302 -10 383 192 0 0 chr1 30167666 30167744 -212496609 - MIR SINE MIR 0 262 185 1168 125 17 23 chr1 30167744 30167920 -212496433 - AluJo/FRAM SINE Alu -2 310 136 2180 118 0 7 chr1 30167922 30168227 -212496126 - AluSx SINE Alu -9 303 1 2440 68 0 3 chr1 30168253 30168549 -212495804 + AluY SINE Alu 1 295 -16 431 200 146 15 chr1 30168722 30168852 -212495501 - MIR3 SINE MIR -46 162 16 1741 158 3 52 chr1 30169048 30169376 -212494977 - AluJb SINE Alu 0 312 1 424 263 98 58 chr1 30169661 30169866 -212494487 + MIR SINE MIR 50 262 0 1806 167 13 16 chr1 30170325 30170631 -212493722 - AluJo SINE Alu -7 305 1 342 205 0 0 chr1 30171376 30171459 -212492894 + T-rich Low_complexity Low_complexity 1 83 0 186 71 0 0 chr1 30171494 30171522 -212492831 + (T)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 30171734 30171755 -212492598 + AT_rich Low_complexity Low_complexity 1 21 0 2188 113 0 10 chr1 30172238 30172539 -212491814 + AluSx SINE Alu 1 298 -14 1665 150 59 11 chr1 30173863 30174136 -212490217 - AluJo SINE Alu -26 286 1 331 250 62 0 chr1 30174161 30174257 -212490096 - L2 LINE L2 -25 3288 3187 2148 112 7 10 chr1 30174304 30174600 -212489753 - AluSx SINE Alu -17 295 1 1716 168 21 11 chr1 30174608 30174893 -212489460 - AluJb SINE Alu -24 288 1 23 33 0 0 chr1 30174905 30174935 -212489418 + AT_rich Low_complexity Low_complexity 1 30 0 2223 128 0 0 chr1 30175161 30175473 -212488880 - AluSx SINE Alu 0 312 1 2354 112 0 0 chr1 30175481 30175793 -212488560 - AluSx SINE Alu 0 312 1 1161 79 0 0 chr1 30175899 30176038 -212488315 + AluSg SINE Alu 1 139 -171 1327 187 0 4 chr1 30176162 30176387 -212487966 + LTR47B LTR ERVL 214 437 -6 308 213 16 0 chr1 30176407 30176468 -212487885 - MLT1G1 LTR MaLR -533 62 1 796 189 61 39 chr1 30176501 30176681 -212487672 - MLT1F LTR MaLR -358 184 1 211 114 159 0 chr1 30176923 30176967 -212487386 + MIR SINE MIR 156 206 -56 980 154 0 77 chr1 30176971 30177005 -212487348 - AluJo/FRAM SINE Alu -10 302 267 2350 97 0 0 chr1 30177005 30177303 -212487050 + AluSc SINE Alu 1 298 -11 980 154 0 77 chr1 30177303 30177450 -212486903 - AluJo/FRAM SINE Alu -45 267 135 260 191 16 16 chr1 30177450 30177513 -212486840 + MIR SINE MIR 199 261 -1 3044 178 34 54 chr1 30177781 30177997 -212486356 - L1ME1 LINE L1 -15 6151 5932 2262 104 3 0 chr1 30177997 30178294 -212486059 + AluSp SINE Alu 1 298 -15 3044 178 34 54 chr1 30178294 30178728 -212485625 - L1ME1 LINE L1 -234 5932 5514 1594 148 4 0 chr1 30178829 30179065 -212485288 - AluSx SINE Alu -75 237 1 436 192 10 19 chr1 30179065 30179169 -212485184 - L1ME3A LINE L1 -194 5976 5874 1192 140 5 11 chr1 30179170 30179356 -212484997 - AluJo SINE Alu -1 311 127 374 244 169 12 chr1 30179356 30179528 -212484825 - L1ME3A LINE L1 -275 5889 5691 * 1800 194 37 57 chr1 30179523 30179780 -212484573 + L1ME2 LINE L1 5713 5959 -205 1940 116 3 55 chr1 30179780 30180091 -212484262 + AluSx SINE Alu 3 297 -15 1800 194 37 57 chr1 30180091 30180293 -212484060 + L1ME2 LINE L1 5959 6163 -1 1784 139 0 4 chr1 30180304 30180563 -212483790 + AluJb SINE Alu 1 258 -54 320 141 136 0 chr1 30180619 30180710 -212483643 - L1ME3A LINE L1 -456 5714 5604 337 227 91 0 chr1 30180711 30180799 -212483554 + MIR SINE MIR 56 151 -111 2294 185 59 5 chr1 30180860 30181339 -212483014 + LTR65 LTR ERV1 167 575 0 23 0 0 0 chr1 30181393 30181416 -212482937 + AT_rich Low_complexity Low_complexity 1 23 0 1559 129 0 13 chr1 30181488 30181721 -212482632 - AluJb SINE Alu -82 230 1 2398 71 0 0 chr1 30181946 30182251 -212482102 + AluSx SINE Alu 1 305 0 1569 150 8 0 chr1 30182367 30182621 -212481732 + AluJb SINE Alu 51 306 -6 198 0 0 0 chr1 30182717 30182739 -212481614 + (GGGTG)n Simple_repeat Simple_repeat 1 22 0 244 211 53 0 chr1 30183065 30183122 -212481231 + MIR SINE MIR 105 164 -98 201 147 0 0 chr1 30183640 30183674 -212480679 + (CCCCAG)n Simple_repeat Simple_repeat 4 37 0 891 150 15 0 chr1 30185084 30185217 -212479136 - AluJo SINE Alu -177 135 1 804 178 96 77 chr1 30185238 30185446 -212478907 - AluJo SINE Alu -14 298 87 2026 147 0 0 chr1 30185838 30186130 -212478223 - AluJb SINE Alu -20 292 1 443 285 151 0 chr1 30186748 30186934 -212477419 - MIR SINE MIR -2 260 47 1850 161 0 11 chr1 30186990 30187309 -212477044 + AluJo SINE Alu 1 316 0 202 354 52 10 chr1 30187431 30187527 -212476826 + L2 LINE L2 3136 3235 -37 970 247 129 53 chr1 30187540 30188014 -212476339 - L2 LINE L2 0 3313 2804 2459 88 0 7 chr1 30188163 30188470 -212475883 + AluSg SINE Alu 1 305 -5 2074 116 3 23 chr1 30188967 30189277 -212475076 + AluSx SINE Alu 1 304 -8 1348 193 8 4 chr1 30189344 30189582 -212474771 - AluJo SINE Alu -37 275 37 2303 97 10 0 chr1 30189881 30190190 -212474163 - AluSx SINE Alu 0 312 1 2203 93 3 20 chr1 30190349 30190649 -212473704 - AluSp SINE Alu -18 295 1 2239 82 7 7 chr1 30190754 30191047 -212473306 - AluSx SINE Alu 0 312 20 291 249 171 63 chr1 30191071 30191228 -212473125 + MIR SINE MIR 3 194 -68 1997 137 0 23 chr1 30191228 30191528 -212472825 + AluJb SINE Alu 1 293 -19 291 249 171 63 chr1 30191528 30191606 -212472747 + MIR SINE MIR 194 262 0 2245 119 0 0 chr1 30191607 30191902 -212472451 - AluSx SINE Alu -17 295 1 798 231 122 0 chr1 30191946 30192175 -212472178 + MIR SINE MIR 6 262 0 599 260 83 15 chr1 30192443 30192647 -212471706 - MIR SINE MIR 0 262 45 1721 161 33 20 chr1 30192657 30192956 -212471397 - AluJo SINE Alu -9 303 1 2037 134 7 0 chr1 30193118 30193402 -212470951 + AluSq SINE Alu 5 290 -23 2206 119 3 3 chr1 30193881 30194193 -212470160 - AluSx SINE Alu 0 312 1 2425 84 0 3 chr1 30194455 30194751 -212469602 + AluSp SINE Alu 1 295 -18 1898 179 3 0 chr1 30194771 30195078 -212469275 - AluJo SINE Alu -4 308 1 285 398 0 0 chr1 30196161 30196279 -212468074 - MIR SINE MIR -68 140 23 731 285 116 4 chr1 30196655 30197037 -212467316 + L2 LINE L2 2728 3145 -168 207 0 0 0 chr1 30197210 30197233 -212467120 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 380 187 122 32 chr1 30197251 30197374 -212466979 + MIR SINE MIR 117 250 -12 2409 82 0 0 chr1 30197935 30198229 -212466124 + AluSx SINE Alu 1 294 -18 609 266 44 52 chr1 30199137 30199288 -212465065 + MIR SINE MIR 6 156 -106 2383 84 3 3 chr1 30199288 30199596 -212464757 + AluY SINE Alu 1 308 -3 609 266 44 52 chr1 30199596 30199696 -212464657 + MIR SINE MIR 156 255 -7 1087 134 52 0 chr1 30200558 30200730 -212463623 - MER2 DNA MER2_type 0 345 165 699 119 0 0 chr1 30200730 30200831 -212463522 - LTR12 LTR ERV1 -1 713 613 292 267 11 0 chr1 30200831 30200921 -212463432 - LTR30 LTR ERV1 -79 643 553 1334 131 159 8 chr1 30200922 30201167 -212463186 - LTR12 LTR ERV1 -429 285 4 584 112 142 166 chr1 30201167 30201219 -212463134 - MER2 DNA MER2_type -180 165 113 2382 103 3 0 chr1 30201219 30201530 -212462823 + AluSq SINE Alu 2 313 0 2383 99 0 0 chr1 30201537 30201840 -212462513 + AluSp SINE Alu 1 303 -10 584 112 142 166 chr1 30201840 30201948 -212462405 - MER2 DNA MER2_type -238 107 1 2347 93 0 0 chr1 30202092 30202393 -212461960 + AluY SINE Alu 1 301 -10 1167 97 0 0 chr1 30202393 30202547 -212461806 + AluSc SINE Alu 132 285 -24 260 75 30 30 chr1 30202547 30202614 -212461739 + (TA)n Simple_repeat Simple_repeat 2 68 0 314 194 0 107 chr1 30202617 30202678 -212461675 + L1MC4 LINE L1 6612 6659 -1383 957 145 0 0 chr1 30202678 30202857 -212461496 + (TA)n Simple_repeat Simple_repeat 2 180 0 314 194 0 107 chr1 30202857 30202898 -212461455 + L1MC4 LINE L1 6659 6703 -1339 192 125 0 0 chr1 30202898 30202930 -212461423 + (TA)n Simple_repeat Simple_repeat 2 33 0 455 139 28 0 chr1 30203145 30203217 -212461136 - MLT1A1 LTR MaLR 0 365 292 704 120 0 19 chr1 30203217 30203325 -212461028 - MLT1A1 LTR MaLR -259 106 1 181 203 17 51 chr1 30204279 30204338 -212460015 + MIR SINE MIR 89 145 -117 25 31 0 0 chr1 30204432 30204464 -212459889 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1 30204553 30204578 -212459775 + AT_rich Low_complexity Low_complexity 1 25 0 1590 194 3 7 chr1 30204578 30204882 -212459471 - AluJo SINE Alu -7 305 3 1895 159 10 3 chr1 30205286 30205581 -212458772 - AluJo SINE Alu -15 297 1 729 211 87 45 chr1 30205675 30205862 -212458491 - MER112 DNA MER1_type -3 253 52 2254 109 0 7 chr1 30205862 30206164 -212458189 - AluSx SINE Alu -12 300 1 729 211 87 45 chr1 30206164 30206218 -212458135 - MER112 DNA MER1_type -204 52 2 1688 182 0 42 chr1 30206937 30207250 -212457103 - AluJo SINE Alu -12 300 1 2400 80 3 10 chr1 30207262 30207563 -212456790 - AluSp SINE Alu -14 299 1 1698 120 15 135 chr1 30207582 30207915 -212456438 - AluSx SINE Alu -19 293 1 258 354 87 17 chr1 30208033 30208321 -212456032 + L2 LINE L2 2073 2380 -934 297 0 0 0 chr1 30208434 30208467 -212455886 + (CA)n Simple_repeat Simple_repeat 2 34 0 866 243 45 5 chr1 30208477 30208699 -212455654 + MIR SINE MIR 30 260 -2 893 133 17 99 chr1 30208808 30208921 -212455432 + FRAM SINE Alu 1 95 -207 2415 93 0 0 chr1 30208921 30209223 -212455130 + AluSx SINE Alu 1 302 -10 893 133 17 99 chr1 30209223 30209290 -212455063 + FRAM SINE Alu 95 166 0 1227 173 0 31 chr1 30209307 30209532 -212454821 + AluJo SINE Alu 85 302 -10 1790 124 4 4 chr1 30210036 30210302 -212454051 - AluY SINE Alu -7 304 39 1996 126 7 13 chr1 30210312 30210613 -212453740 - AluSq SINE Alu -14 299 1 398 20 20 0 chr1 30211040 30211091 -212453262 + (TG)n Simple_repeat Simple_repeat 2 53 0 1682 189 39 0 chr1 30211091 30211377 -212452976 - AluJb SINE Alu -15 297 1 2157 114 0 16 chr1 30211675 30211990 -212452363 + AluSx SINE Alu 1 310 -2 371 328 36 40 chr1 30213161 30213408 -212450945 + L1MEc LINE L1 564 809 -5310 1114 299 68 25 chr1 30213453 30214193 -212450160 + L1MEc LINE L1 1004 1712 -865 287 160 53 130 chr1 30214198 30214280 -212450073 + L1ME3A LINE L1 5195 5265 -881 2336 101 3 0 chr1 30214280 30214586 -212449767 + AluSg SINE Alu 1 307 -3 287 160 53 130 chr1 30214586 30214634 -212449719 + L1ME3A LINE L1 5265 5315 -831 325 135 0 0 chr1 30214643 30214695 -212449658 - Charlie1 DNA MER1_type -5 2756 2705 2379 75 3 3 chr1 30214702 30214994 -212449359 + AluSp SINE Alu 1 292 -21 1069 129 15 156 chr1 30215030 30215047 -212449306 - Charlie1 DNA MER1_type -45 2716 2698 1823 117 61 109 chr1 30215047 30215088 -212449265 - THE1C LTR MaLR 0 375 334 2237 108 0 3 chr1 30215088 30215393 -212448960 + AluSg SINE Alu 1 304 -6 1823 117 61 109 chr1 30215393 30215745 -212448608 - THE1C LTR MaLR -41 334 1 1069 129 15 156 chr1 30215745 30216061 -212448292 - Charlie1 DNA MER1_type -63 2698 2430 1014 223 5 0 chr1 30216061 30216285 -212448068 - L1M1 LINE L1 -4411 3154 2930 3991 163 87 61 chr1 30216286 30217236 -212447117 - Charlie1 DNA MER1_type -311 2450 1526 1808 148 74 44 chr1 30217236 30217600 -212446753 - THE1C LTR MaLR 0 375 1 3991 163 87 61 chr1 30217600 30217621 -212446732 - Charlie1 DNA MER1_type -1235 1526 1507 2136 101 17 10 chr1 30217621 30217919 -212446434 - L1MA2 LINE L1 0 6304 6005 3991 163 87 61 chr1 30217919 30217988 -212446365 - Charlie1 DNA MER1_type -1254 1507 82 1909 234 61 79 chr1 30217991 30218701 -212445652 + L1ME3A LINE L1 5368 6064 -106 2120 97 3 24 chr1 30218863 30219206 -212445147 - AluSx SINE Alu 0 337 1 2275 101 3 3 chr1 30219612 30219919 -212444434 + AluSg SINE Alu 1 307 -3 2305 84 14 10 chr1 30220019 30220316 -212444037 - AluSg SINE Alu -12 298 1 26 50 0 0 chr1 30220505 30220545 -212443808 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr1 30220902 30220923 -212443430 + AT_rich Low_complexity Low_complexity 1 21 0 247 284 49 37 chr1 30221367 30221448 -212442905 + L2 LINE L2 3133 3214 -58 1990 96 46 0 chr1 30221600 30221882 -212442471 + AluSq SINE Alu 5 299 -14 830 152 0 8 chr1 30221882 30222007 -212442346 + FLAM_C SINE Alu 2 125 -8 884 123 8 8 chr1 30222065 30222195 -212442158 - FLAM_C SINE Alu -13 130 1 2335 88 7 0 chr1 30222993 30223298 -212441055 - AluSp SINE Alu -5 308 2 2034 154 0 0 chr1 30223736 30224034 -212440319 - AluSx SINE Alu -14 298 1 290 259 59 35 chr1 30224164 30224249 -212440104 + MER5B DNA MER1_type 1 87 -91 265 232 0 14 chr1 30224261 30224330 -212440023 - MER116 DNA Mariner -12 68 1 502 143 0 51 chr1 30224330 30224428 -212439925 + MER5B DNA MER1_type 86 178 0 1554 135 0 0 chr1 30224450 30224680 -212439673 - AluSg/x SINE Alu -3 309 80 1730 167 14 0 chr1 30224808 30225089 -212439264 + AluJo SINE Alu 1 285 -27 2158 83 42 3 chr1 30225125 30225413 -212438940 + AluSx SINE Alu 1 299 -13 815 181 67 138 chr1 30225415 30225786 -212438567 - MER2 DNA MER2_type 0 345 1 571 121 11 33 chr1 30226346 30226437 -212437916 - MER21-int LTR ERV1 -1548 2643 2555 2155 130 0 13 chr1 30226452 30226589 -212437764 + AluSx SINE Alu 1 138 -174 2098 112 10 10 chr1 30226589 30226884 -212437469 + AluSq SINE Alu 1 295 -18 2155 130 0 13 chr1 30226884 30227061 -212437292 + AluSx SINE Alu 138 311 -1 499 104 0 0 chr1 30227083 30227150 -212437203 + Alu SINE Alu 2 68 -243 298 109 22 0 chr1 30227150 30227196 -212437157 + GA-rich Low_complexity Low_complexity 2 48 0 2292 104 7 0 chr1 30227196 30227503 -212436850 + AluSg SINE Alu 1 309 -1 615 141 23 40 chr1 30227512 30227689 -212436664 + GA-rich Low_complexity Low_complexity 2 175 0 1698 189 47 21 chr1 30227690 30228028 -212436325 - MER21-int LTR ERV1 -1663 2528 2182 1227 209 17 8 chr1 30228019 30228258 -212436095 - MER21-int LTR ERV1 -2178 2013 1773 * 643 234 48 0 chr1 30228528 30228652 -212435701 + FLAM_A SINE Alu 12 141 -1 2195 103 3 7 chr1 30228659 30228959 -212435394 + AluY SINE Alu 1 299 -12 2289 78 10 0 chr1 30229192 30229485 -212434868 - AluSp SINE Alu -17 296 1 536 207 41 135 chr1 30229506 30229552 -212434801 - L1MC4 LINE L1 0 8042 7993 1953 158 24 7 chr1 30229552 30229849 -212434504 + AluJo SINE Alu 1 302 -10 536 207 41 135 chr1 30229849 30230068 -212434285 - L1MC4 LINE L1 -49 7993 7802 2304 41 4 2 chr1 30230854 30231164 -212433189 - L1P LINE L1 -789 5367 5058 5308 19 16 0 chr1 30231164 30231737 -212432616 + L1PA3 LINE L1 5569 6155 0 349 210 175 28 chr1 30231862 30232166 -212432187 + L1ME4a LINE L1 5744 6117 -4 2196 124 0 9 chr1 30232293 30232608 -212431745 + AluSx SINE Alu 1 312 0 231 193 88 0 chr1 30233008 30233065 -212431288 - LTR29 LTR ERV1 -292 330 269 207 0 0 0 chr1 30233714 30233737 -212430616 + (TTG)n Simple_repeat Simple_repeat 2 24 0 751 147 0 101 chr1 30234492 30234621 -212429732 + FLAM_C SINE Alu 1 116 -17 27 29 0 0 chr1 30234622 30234656 -212429697 + AT_rich Low_complexity Low_complexity 1 34 0 601 132 11 0 chr1 30235096 30235187 -212429166 + U6 snRNA snRNA 1 92 -15 2111 122 0 22 chr1 30235231 30235542 -212428811 - AluSx SINE Alu -8 304 1 546 194 54 47 chr1 30235603 30235732 -212428621 - MER5B DNA MER1_type -48 130 1 219 256 45 128 chr1 30235732 30235817 -212428536 + MIR3 SINE MIR 26 99 -109 2209 117 0 7 chr1 30235817 30236116 -212428237 + AluSg SINE Alu 1 297 -13 219 256 45 128 chr1 30236116 30236146 -212428207 + MIR3 SINE MIR 99 130 -78 2468 75 3 0 chr1 30236263 30236568 -212427785 - AluY SINE Alu -1 310 5 2218 113 13 3 chr1 30236652 30236961 -212427392 + AluSx SINE Alu 1 312 0 378 0 0 0 chr1 30237086 30237128 -212427225 + (TG)n Simple_repeat Simple_repeat 2 43 0 1836 108 0 98 chr1 30237406 30237542 -212426811 + AluSx SINE Alu 1 92 -220 2122 117 0 36 chr1 30237542 30237849 -212426504 + AluSq SINE Alu 1 296 -17 1836 108 0 98 chr1 30237849 30238017 -212426336 + AluSx SINE Alu 92 275 -37 1620 140 113 0 chr1 30238023 30238280 -212426073 + AluSx SINE Alu 1 286 -26 377 290 142 16 chr1 30239456 30239639 -212424714 + MIR SINE MIR 8 213 -49 5747 29 26 6 chr1 30239684 30240334 -212424019 + SVA Other Other 724 1386 0 2524 80 0 6 chr1 30240753 30241067 -212423286 - AluSx SINE Alu 0 312 1 376 295 124 0 chr1 30242150 30242279 -212422074 + L2 LINE L2 3121 3265 -7 516 301 68 0 chr1 30243845 30243991 -212420362 - L2 LINE L2 0 3272 3117 2058 122 0 10 chr1 30245291 30245586 -212418767 + AluSx SINE Alu 1 292 -20 794 239 53 25 chr1 30246280 30246523 -212417830 + MIR SINE MIR 3 252 -10 2498 67 3 13 chr1 30246963 30247276 -212417077 - AluY SINE Alu -1 310 1 729 118 0 0 chr1 30247314 30247416 -212416937 + AluSq/x SINE Alu 7 108 -204 2387 66 17 0 chr1 30247708 30247996 -212416357 + AluY SINE Alu 1 293 -18 2287 74 17 14 chr1 30248053 30248350 -212416003 + AluY SINE Alu 1 298 -13 2139 140 0 16 chr1 30248353 30248488 -212415865 + AluSg SINE Alu 1 137 -173 2426 90 0 3 chr1 30248488 30248789 -212415564 + AluSg SINE Alu 1 300 -10 2139 140 0 16 chr1 30248789 30248961 -212415392 + AluSg SINE Alu 137 303 -7 25 0 0 0 chr1 30249231 30249256 -212415097 + AT_rich Low_complexity Low_complexity 1 25 0 985 181 35 0 chr1 30249632 30249803 -212414550 + FRAM SINE Alu 1 168 -8 2172 138 0 0 chr1 30249804 30250109 -212414244 + AluSx SINE Alu 1 305 -7 1648 193 7 7 chr1 30250335 30250635 -212413718 + AluJo SINE Alu 1 300 -12 21 0 0 0 chr1 30251420 30251441 -212412912 + AT_rich Low_complexity Low_complexity 1 21 0 539 257 0 0 chr1 30252137 30252250 -212412103 - MER3 DNA MER1_type -96 113 1 2466 91 0 3 chr1 30252617 30252925 -212411428 + AluSp SINE Alu 1 307 -6 1983 123 60 11 chr1 30253935 30254220 -212410133 + AluSx SINE Alu 3 301 -11 1882 171 7 0 chr1 30254229 30254516 -212409837 + AluSx SINE Alu 1 289 -23 1989 176 0 0 chr1 30254549 30254861 -212409492 - AluJb SINE Alu 0 312 1 2360 93 13 7 chr1 30254875 30255185 -212409168 - AluSx SINE Alu 0 312 1 2480 45 0 72 chr1 30255258 30255591 -212408762 - AluY SINE Alu -2 309 1 914 132 16 0 chr1 30255591 30255720 -212408633 - AluSq/x SINE Alu -182 131 1 1975 157 7 0 chr1 30255724 30256023 -212408330 - AluSx SINE Alu -11 301 1 634 133 0 0 chr1 30256070 30256160 -212408193 - AluSg/x SINE Alu -14 295 206 3002 146 10 47 chr1 30256160 30256286 -212408067 + Tigger1 DNA MER2_type 1684 1813 -605 1779 139 0 16 chr1 30256286 30256544 -212407809 - AluSx SINE Alu -22 290 37 3002 146 10 47 chr1 30256544 30256969 -212407384 + Tigger1 DNA MER2_type 1813 2216 -202 2404 89 7 0 chr1 30256969 30257272 -212407081 - AluSq SINE Alu -8 305 1 3002 146 10 47 chr1 30257272 30257295 -212407058 + Tigger1 DNA MER2_type 2216 2238 -180 712 222 0 0 chr1 30257384 30257510 -212406843 - AluJb SINE Alu -185 127 2 1124 159 0 0 chr1 30257707 30257870 -212406483 - AluSg/x SINE Alu -21 289 127 2106 115 6 37 chr1 30257874 30258196 -212406157 - AluSx SINE Alu 0 312 1 664 116 0 0 chr1 30258278 30258364 -212405989 + AluJ/FLAM SINE Alu 6 91 -221 350 264 65 88 chr1 30258382 30258544 -212405809 + L1ME4a LINE L1 5497 5652 -469 2105 125 7 0 chr1 30258544 30258840 -212405513 - AluSq SINE Alu -15 298 1 350 264 65 88 chr1 30258840 30259009 -212405344 + L1ME4a LINE L1 5652 5823 -298 2157 121 10 3 chr1 30259050 30259348 -212405005 + AluSq SINE Alu 1 300 -13 735 181 15 23 chr1 30259359 30259492 -212404861 + FLAM_A SINE Alu 2 133 0 2275 94 3 3 chr1 30259506 30259794 -212404559 + AluSp SINE Alu 13 300 -13 391 344 5 48 chr1 30259801 30259990 -212404363 + L1ME4a LINE L1 5860 6040 -81 283 323 52 0 chr1 30260069 30260165 -212404188 + L2 LINE L2 3168 3268 -4 1683 130 50 76 chr1 30260262 30260563 -212403790 - AluSx SINE Alu -19 293 1 360 354 59 31 chr1 30260608 30260862 -212403491 - L1ME4a LINE L1 -70 6051 5791 2231 97 10 0 chr1 30260901 30261191 -212403162 - AluSx SINE Alu -8 304 12 2022 70 0 0 chr1 30261297 30261538 -212402815 - AluY SINE Alu -70 241 1 24 0 0 0 chr1 30261548 30261572 -212402781 + AT_rich Low_complexity Low_complexity 1 24 0 388 277 32 0 chr1 30261600 30261694 -212402659 - L2 LINE L2 -3 3310 3214 1943 133 14 4 chr1 30261699 30262010 -212402343 + AluSx SINE Alu 1 314 0 2146 98 11 11 chr1 30262018 30262305 -212402048 + AluSg1 SINE Alu 1 287 -22 249 297 314 16 chr1 30262929 30263114 -212401239 - MIR SINE MIR 0 262 23 2022 108 56 11 chr1 30263457 30263744 -212400609 - AluSq SINE Alu -13 300 1 1627 168 28 31 chr1 30263747 30264033 -212400320 - AluJo SINE Alu -21 291 7 2130 123 0 7 chr1 30264116 30264409 -212399944 - AluSx SINE Alu -21 291 1 2023 99 51 20 chr1 30265047 30265340 -212399013 + AluSx SINE Alu 1 302 -10 337 216 281 36 chr1 30265351 30265490 -212398863 + MIR SINE MIR 90 262 0 225 259 288 63 chr1 30265734 30265939 -212398414 + MIR SINE MIR 2 252 -10 769 202 24 30 chr1 30266321 30266489 -212397864 + FRAM SINE Alu 1 163 -13 2162 128 13 0 chr1 30266545 30266851 -212397502 + AluSx SINE Alu 1 310 -2 829 168 0 0 chr1 30266857 30266988 -212397365 + FLAM_C SINE Alu 3 133 0 191 303 91 0 chr1 30267287 30267353 -212397000 + MIR SINE MIR 55 126 -82 2414 83 0 7 chr1 30267422 30267724 -212396629 + AluY SINE Alu 1 300 -11 1353 194 27 34 chr1 30267873 30268166 -212396187 + AluJb SINE Alu 1 291 -21 403 285 112 23 chr1 30268190 30268404 -212395949 - MIR SINE MIR -10 252 20 231 335 116 18 chr1 30268401 30268565 -212395788 - MIR SINE MIR -55 207 28 * 842 144 0 23 chr1 30268568 30268700 -212395653 - AluSg/x SINE Alu -19 291 163 919 109 0 29 chr1 30269054 30269191 -212395162 + FLAM_C SINE Alu 1 133 0 239 317 54 58 chr1 30270455 30270660 -212393693 - L3 LINE CR1 -198 1379 1176 278 283 18 44 chr1 30270750 30270774 -212393579 - L2 LINE L2 0 3272 3249 1566 172 20 17 chr1 30270774 30271076 -212393277 + AluJo SINE Alu 4 306 -6 278 283 18 44 chr1 30271076 30271164 -212393189 - L2 LINE L2 -23 3249 3163 2293 89 0 3 chr1 30271184 30271477 -212392876 - AluSp SINE Alu -3 310 19 422 306 50 19 chr1 30272026 30272186 -212392167 + MIR SINE MIR 32 196 -66 216 220 20 0 chr1 30272436 30272486 -212391867 + L2 LINE L2 3000 3050 -263 184 250 0 25 chr1 30272942 30272982 -212391371 + MIR SINE MIR 34 72 -136 238 186 0 0 chr1 30273268 30273311 -212391042 + MIR SINE MIR 15 57 -205 2135 130 3 10 chr1 30273317 30273618 -212390735 - AluJb SINE Alu -13 299 1 784 203 0 0 chr1 30273648 30273776 -212390577 + AluJo SINE Alu 7 134 -178 2001 153 7 0 chr1 30273784 30274071 -212390282 + AluJb SINE Alu 2 290 -22 732 147 37 0 chr1 30274072 30274181 -212390172 - AluJo/FLAM SINE Alu -198 114 2 2396 107 0 0 chr1 30274250 30274560 -212389793 - AluSx SINE Alu 0 312 3 709 144 0 0 chr1 30274587 30274691 -212389662 - AluJb SINE Alu -15 297 194 2537 75 0 0 chr1 30274847 30275153 -212389200 + AluY SINE Alu 1 306 -5 305 119 0 0 chr1 30275191 30275233 -212389120 + MIR SINE MIR 2 43 -219 2625 61 0 3 chr1 30275518 30275828 -212388525 - AluY SINE Alu -2 309 1 529 284 153 33 chr1 30276435 30276650 -212387703 + MIR SINE MIR 2 242 -20 570 127 0 0 chr1 30276884 30276963 -212387390 + AluSc SINE Alu 2 80 -229 2482 87 0 0 chr1 30276963 30277261 -212387092 + AluSx SINE Alu 1 298 -14 1700 113 0 0 chr1 30277261 30277481 -212386872 + AluSc SINE Alu 71 292 -17 2269 79 7 10 chr1 30277859 30278150 -212386203 + AluY SINE Alu 1 290 -21 417 306 71 24 chr1 30278163 30278333 -212386020 + L3 LINE CR1 1323 1500 -77 712 196 146 5 chr1 30278596 30278795 -212385558 - L1ME1 LINE L1 -4 6162 5936 2503 69 3 0 chr1 30278828 30279131 -212385222 + AluSp SINE Alu 1 304 -9 1621 118 32 20 chr1 30279227 30279473 -212384880 - AluSx SINE Alu -9 303 55 3827 81 33 0 chr1 30281869 30282391 -212381962 + SVA Other Other 2 540 -846 2198 70 14 3 chr1 30282724 30283009 -212381344 - AluY SINE Alu -23 288 1 531 288 38 38 chr1 30283616 30283800 -212380553 + MIR SINE MIR 2 185 -77 1816 131 46 0 chr1 30284064 30284144 -212380209 + AluSg SINE Alu 1 76 -234 2372 90 27 0 chr1 30284144 30284445 -212379908 + AluSq SINE Alu 1 309 -4 1816 131 46 0 chr1 30284445 30284647 -212379706 + AluSg SINE Alu 76 296 -14 576 39 0 0 chr1 30284725 30284802 -212379551 - AluSc SINE Alu -1 308 232 427 232 10 38 chr1 30284904 30285190 -212379163 + GA-rich Low_complexity Low_complexity 1 278 0 271 412 0 21 chr1 30285193 30285290 -212379063 + polypurine Low_complexity Low_complexity 3 97 0 5579 59 2 74 chr1 30285290 30286084 -212378269 + SVA Other Other 650 1386 0 409 245 140 7 chr1 30286209 30286352 -212378001 - MIR SINE MIR -71 191 30 1031 103 0 0 chr1 30286393 30286529 -212377824 - AluSq/x SINE Alu -177 136 1 2451 98 0 0 chr1 30286643 30286948 -212377405 - AluSg SINE Alu 0 310 6 2406 90 3 3 chr1 30287042 30287352 -212377001 - AluSx SINE Alu -2 310 1 324 238 62 0 chr1 30287880 30287960 -212376393 - MIR3 SINE MIR -15 193 109 225 0 0 0 chr1 30288317 30288342 -212376011 + (A)n Simple_repeat Simple_repeat 1 25 0 1664 109 124 11 chr1 30288618 30288884 -212375469 + AluSg SINE Alu 1 296 -14 325 307 86 18 chr1 30289279 30289442 -212374911 - MIR SINE MIR -41 221 48 318 264 171 45 chr1 30289766 30290035 -212374318 + L2 LINE L2 1568 1870 -1444 1023 179 27 0 chr1 30290283 30290506 -212373847 + MER90 LTR ERV1 1 229 -346 757 169 59 156 chr1 30290544 30290676 -212373677 + MLT1B LTR MaLR 54 197 -193 2373 97 3 6 chr1 30290676 30290987 -212373366 + AluSg SINE Alu 1 310 0 757 169 59 156 chr1 30290987 30291227 -212373126 + MLT1B LTR MaLR 197 390 0 * 1320 197 46 46 chr1 30291227 30291387 -212372966 + MER90 LTR ERV1 263 422 -192 2091 144 7 0 chr1 30291387 30291685 -212372668 - AluSx SINE Alu -12 300 1 1320 197 46 46 chr1 30291685 30291876 -212372477 + MER90 LTR ERV1 421 614 0 577 185 11 112 chr1 30292007 30292185 -212372168 + L2 LINE L2 3154 3313 0 257 320 62 8 chr1 30292191 30292319 -212372034 - L2 LINE L2 -172 3100 2966 1080 73 7 7 chr1 30292320 30292456 -212371897 + AluSq/x SINE Alu 1 136 -176 232 343 120 13 chr1 30292469 30292702 -212371651 - L2 LINE L2 -339 2975 2718 987 122 14 0 chr1 30292730 30292869 -212371484 + AluJo SINE Alu 1 141 -171 219 88 0 0 chr1 30292886 30292920 -212371433 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 1243 174 184 58 chr1 30294551 30294854 -212369499 + MSTC LTR MaLR 1 363 -65 2455 93 0 0 chr1 30294854 30295155 -212369198 - AluSq SINE Alu -12 301 1 1243 174 184 58 chr1 30295155 30295231 -212369122 + MSTC LTR MaLR 363 428 0 372 279 44 44 chr1 30295516 30295652 -212368701 + MIR SINE MIR 57 192 -70 2298 108 3 0 chr1 30295727 30296024 -212368329 + AluSp SINE Alu 1 298 -15 236 100 0 0 chr1 30296165 30296205 -212368148 - L1MB2 LINE L1 -7 6164 6125 2199 113 7 0 chr1 30296205 30296498 -212367855 + AluSx SINE Alu 1 295 -17 243 132 26 0 chr1 30296526 30296564 -212367789 - MER4E LTR ERV1 -75 691 653 2515 59 3 3 chr1 30296570 30296873 -212367480 - AluY SINE Alu -8 303 1 1717 169 3 29 chr1 30296873 30297042 -212367311 - L1MB2 LINE L1 -44 6127 5970 2301 118 0 0 chr1 30297042 30297346 -212367007 - AluSx SINE Alu -8 304 1 1717 169 3 29 chr1 30297346 30297525 -212366828 - L1MB2 LINE L1 -201 5970 5788 1477 141 76 65 chr1 30297525 30297674 -212366679 + AluJb SINE Alu 1 156 -156 2626 59 0 3 chr1 30297674 30297981 -212366372 + AluY SINE Alu 1 306 -5 1477 141 76 65 chr1 30297981 30298094 -212366259 + AluJb SINE Alu 156 266 -46 3092 101 15 19 chr1 30298102 30298577 -212365776 - LTR15 LTR ERV1 -11 482 10 2420 96 3 0 chr1 30298591 30298894 -212365459 + AluSp SINE Alu 6 309 -4 2383 80 3 10 chr1 30299000 30299301 -212365052 + AluSx SINE Alu 1 299 -13 246 234 0 0 chr1 30299446 30299510 -212364843 + AluJo SINE Alu 73 136 -166 529 216 0 9 chr1 30300851 30300962 -212363391 - MIR SINE MIR -132 130 21 203 224 92 26 chr1 30301072 30301148 -212363205 + MIR SINE MIR 36 116 -92 566 121 9 60 chr1 30301150 30301266 -212363087 + FRAM SINE Alu 62 171 -5 1407 152 42 115 chr1 30301522 30301701 -212362652 - AluJo SINE Alu -6 306 160 258 32 0 0 chr1 30301701 30301732 -212362621 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1407 152 42 115 chr1 30301732 30301882 -212362471 - AluJo SINE Alu -152 160 1 2263 115 3 0 chr1 30301884 30302179 -212362174 - AluSp SINE Alu -15 298 3 1079 98 0 0 chr1 30302184 30302317 -212362036 - AluSq/x SINE Alu -179 133 1 733 139 0 0 chr1 30302317 30302439 -212361914 - FLAM_C SINE Alu -1 142 21 2373 88 13 10 chr1 30302461 30302769 -212361584 - AluSq SINE Alu -4 309 1 426 277 8 8 chr1 30302772 30302891 -212361462 - MIR SINE MIR -113 149 31 559 146 0 0 chr1 30303029 30303118 -212361235 + AluJ/FLAM SINE Alu 11 99 -213 1865 169 0 10 chr1 30303540 30303841 -212360512 + AluJb SINE Alu 4 301 -11 840 157 16 32 chr1 30303909 30304083 -212360270 - MER69A DNA AcHobo -8 169 1 2906 7 0 0 chr1 30304216 30304521 -212359832 - AluYb8 SINE Alu -13 305 1 1182 151 11 113 chr1 30304576 30304629 -212359724 - MER8 DNA MER2_type -1 238 181 2234 104 0 7 chr1 30304629 30304944 -212359409 - AluSx SINE Alu 0 313 1 2249 129 0 3 chr1 30304953 30305264 -212359089 - AluSg SINE Alu 0 310 1 1182 151 11 113 chr1 30305264 30305463 -212358890 - MER8 DNA MER2_type -66 173 1 1950 146 17 10 chr1 30305678 30305980 -212358373 + AluSx SINE Alu 1 304 -8 2162 132 0 23 chr1 30305983 30306287 -212358066 + AluSx SINE Alu 1 297 -15 995 171 5 0 chr1 30306740 30306927 -212357426 - L1MB3 LINE L1 -2 6181 5994 881 137 103 7 chr1 30306947 30307137 -212357216 - AluJb SINE Alu 0 328 125 2646 157 38 2 chr1 30307137 30307641 -212356712 - L1MB3 LINE L1 -211 5972 5451 1880 156 0 20 chr1 30307673 30307968 -212356385 + AluJb SINE Alu 13 301 -11 845 227 6 0 chr1 30308303 30308475 -212355878 - FAM SINE Alu -2 173 1 1341 82 12 0 chr1 30308484 30308654 -212355699 - AluY SINE Alu -12 299 128 481 151 16 54 chr1 30308659 30308844 -212355509 + GA-rich Low_complexity Low_complexity 2 179 0 226 336 116 30 chr1 30309833 30310065 -212354288 - L2 LINE L2 -3 3269 3018 2467 90 0 6 chr1 30310139 30310451 -212353902 - AluY SINE Alu -1 310 1 443 257 119 43 chr1 30310475 30310685 -212353668 + MIR SINE MIR 5 230 -32 1860 106 110 0 chr1 30310702 30310966 -212353387 + AluSx SINE Alu 11 303 -9 839 129 0 50 chr1 30311169 30311309 -212353044 - FLAM_C SINE Alu -10 133 1 1499 230 57 42 chr1 30311413 30311866 -212352487 - L1MC4 LINE L1 -121 7921 7462 2145 94 42 3 chr1 30313023 30313310 -212351043 - AluSq SINE Alu -15 298 1 1586 140 79 19 chr1 30313346 30313611 -212350742 + AluJo SINE Alu 2 282 -30 2140 114 3 7 chr1 30313615 30313904 -212350449 - AluSx SINE Alu -24 288 1 29 0 0 0 chr1 30313904 30313933 -212350420 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 30313955 30313984 -212350369 + AT_rich Low_complexity Low_complexity 1 29 0 2417 77 0 7 chr1 30313993 30314290 -212350063 + AluY SINE Alu 1 295 -16 2352 91 0 44 chr1 30314370 30314689 -212349664 + AluSq SINE Alu 1 305 -8 409 316 64 14 chr1 30315987 30316190 -212348163 - MIR SINE MIR -53 209 3 231 350 157 5 chr1 30316190 30316538 -212347815 + L2 LINE L2 2574 2977 -337 521 346 97 5 chr1 30316904 30317121 -212347232 - MIR SINE MIR -24 238 2 189 287 226 0 chr1 30317574 30317689 -212346664 + MIR SINE MIR 48 188 -74 305 294 59 0 chr1 30318553 30318655 -212345698 - MIR3 SINE MIR -9 199 92 180 234 0 43 chr1 30319502 30319549 -212344804 - MIR SINE MIR 0 262 218 671 277 58 29 chr1 30319646 30319888 -212344465 + MIR SINE MIR 14 262 0 2503 82 0 13 chr1 30371570 30371886 -212292467 - AluSx SINE Alu 0 312 1 2175 98 7 0 chr1 30375157 30375442 -212288911 - AluSx SINE Alu -7 305 19 2221 96 0 0 chr1 30376175 30376476 -212287877 + AluSc SINE Alu 1 301 0 2637 52 0 0 chr1 30377033 30377341 -212287012 - AluY SINE Alu -3 308 1 22 35 0 0 chr1 30377469 30377498 -212286855 + AT_rich Low_complexity Low_complexity 1 29 0 288 0 0 0 chr1 30378100 30378132 -212286221 + (TG)n Simple_repeat Simple_repeat 2 33 0 1935 134 13 36 chr1 30378157 30378464 -212285889 + AluSx SINE Alu 1 300 -12 40 0 0 0 chr1 30378729 30378769 -212285584 + AT_rich Low_complexity Low_complexity 1 40 0 1988 145 30 0 chr1 30378791 30379088 -212285265 - AluSx SINE Alu -6 306 1 180 0 0 0 chr1 30379800 30379820 -212284533 + (TC)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr1 30379820 30379841 -212284512 + AT_rich Low_complexity Low_complexity 1 21 0 262 91 23 0 chr1 30379842 30379886 -212284467 + AluSc SINE Alu 251 295 -4 403 288 25 66 chr1 30380043 30380091 -212284262 - MIR SINE MIR -6 256 208 939 149 0 8 chr1 30380091 30380225 -212284128 - FLAM_A SINE Alu 0 133 1 403 288 25 66 chr1 30380225 30380374 -212283979 - MIR SINE MIR -54 208 67 344 164 0 6 chr1 30380403 30380467 -212283886 + L1MB4 LINE L1 6063 6123 -51 935 196 131 16 chr1 30380467 30380712 -212283641 - MER44D DNA MER2_type 0 605 461 1470 155 19 4 chr1 30380712 30380970 -212283383 - AluSg SINE Alu -12 298 37 602 309 67 51 chr1 30382383 30382607 -212281746 - L3 LINE CR1 -21 1556 1324 2269 123 0 0 chr1 30382607 30382916 -212281437 - AluSx SINE Alu -3 309 1 602 309 67 51 chr1 30382916 30383005 -212281348 - L3 LINE CR1 -253 1324 1238 725 147 9 0 chr1 30383175 30383284 -212281069 + AluSg/x SINE Alu 188 297 -15 25 0 0 0 chr1 30383284 30383309 -212281044 + AT_rich Low_complexity Low_complexity 1 25 0 2540 57 3 0 chr1 30383310 30383606 -212280747 + AluY SINE Alu 1 297 -14 2000 153 3 3 chr1 30383614 30383915 -212280438 + AluJo SINE Alu 3 303 -9 251 337 42 11 chr1 30383915 30384010 -212280343 - L3 LINE CR1 -481 1096 999 834 167 0 8 chr1 30384155 30384287 -212280066 + FRAM SINE Alu 20 150 -26 206 274 48 0 chr1 30384367 30384429 -212279924 - MIR SINE MIR -40 222 158 690 149 0 0 chr1 30384704 30384838 -212279515 + (TC)n Simple_repeat Simple_repeat 2 135 0 740 175 0 0 chr1 30386054 30386168 -212278185 - AluJb SINE Alu -197 115 2 627 285 81 71 chr1 30386610 30386766 -212277587 - L1ME LINE L1 -344 5818 5665 1119 184 85 33 chr1 30386766 30386978 -212277375 - MER58A DNA MER1_type -1 223 1 627 285 81 71 chr1 30386978 30387355 -212276998 - L1ME LINE L1 -497 5665 5293 2181 110 7 0 chr1 30387355 30387647 -212276706 - AluSx SINE Alu -17 295 2 627 285 81 71 chr1 30387647 30387730 -212276623 - L1ME LINE L1 -869 5293 5212 1585 138 21 50 chr1 30387730 30388013 -212276340 - AluJb SINE Alu -24 288 14 627 285 81 71 chr1 30388013 30388306 -212276047 - L1ME LINE L1 -950 5212 4903 340 162 135 14 chr1 30388307 30388381 -212275972 + L2 LINE L2 3198 3280 -33 939 195 82 170 chr1 30388393 30388781 -212275572 + L2 LINE L2 1633 1953 -1361 1430 182 45 52 chr1 30388781 30389072 -212275281 - AluJb SINE Alu -23 289 1 939 195 82 170 chr1 30389072 30389277 -212275076 + L2 LINE L2 1953 2174 -1140 2140 128 0 0 chr1 30389277 30389575 -212274778 - AluSx SINE Alu -14 298 1 307 293 71 0 chr1 30389593 30389692 -212274661 - MIR SINE MIR -63 145 40 431 211 0 11 chr1 30389778 30389868 -212274485 + AluS SINE Alu 2 90 -223 2163 114 0 3 chr1 30390456 30390755 -212273598 - AluSg SINE Alu -12 298 1 1330 198 19 164 chr1 30390755 30391059 -212273294 - L1ME LINE L1 -2120 4026 3679 2291 111 0 0 chr1 30391059 30391356 -212272997 - AluSx SINE Alu -15 297 1 1330 198 19 164 chr1 30391356 30391440 -212272913 - L1ME LINE L1 -2467 3679 3584 1741 173 0 13 chr1 30391440 30391747 -212272606 - AluJb SINE Alu -9 303 1 1330 198 19 164 chr1 30391747 30392003 -212272350 - L1ME LINE L1 -2562 3584 3475 1815 133 97 13 chr1 30392663 30392972 -212271381 - MER7A DNA MER2_type -12 334 2 2222 87 0 22 chr1 30393074 30393395 -212270958 + AluSc SINE Alu 1 282 -27 1876 139 26 23 chr1 30393403 30393712 -212270641 + AluSx SINE Alu 1 310 -2 3847 133 19 18 chr1 30393927 30394220 -212270133 + L1MB2 LINE L1 5537 5828 -343 2270 98 7 0 chr1 30394220 30394506 -212269847 + AluSc SINE Alu 3 290 -19 3847 133 19 18 chr1 30394506 30394842 -212269511 + L1MB2 LINE L1 5828 6167 -4 2014 128 10 7 chr1 30395254 30395552 -212268801 + AluSx SINE Alu 2 300 -12 1900 241 108 6 chr1 30395670 30396171 -212268182 - MLT1H1 LTR MaLR -3 552 1 1397 182 6 88 chr1 30397819 30398149 -212266204 + AluJo SINE Alu 1 303 -9 260 179 0 46 chr1 30398153 30398218 -212266135 - L2 LINE L2 -79 3234 3133 2184 113 0 0 chr1 30398493 30398804 -212265549 - AluSq SINE Alu 0 311 1 1195 246 135 25 chr1 30398804 30399380 -212264973 + L2 LINE L2 2660 3308 -5 1838 136 97 13 chr1 30399525 30399834 -212264519 - MER7A DNA MER2_type -12 334 2 2236 83 0 24 chr1 30399936 30400266 -212264087 + AluSc SINE Alu 1 323 0 2101 110 36 32 chr1 30400393 30400702 -212263651 - AluSx SINE Alu -2 310 1 4513 166 78 71 chr1 30400702 30400788 -212263565 + L1MB4 LINE L1 4216 4300 -1880 2312 95 10 0 chr1 30400788 30401094 -212263259 - AluSg SINE Alu -1 309 1 4513 166 78 71 chr1 30401094 30401851 -212262502 + L1MB4 LINE L1 4300 5050 -1130 189 74 0 0 chr1 30401851 30401878 -212262475 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4513 166 78 71 chr1 30401878 30402139 -212262214 + L1MB4 LINE L1 5050 5308 -872 1945 89 0 0 chr1 30402139 30402374 -212261979 + AluSx SINE Alu 16 250 -62 4513 144 22 18 chr1 30402374 30402832 -212261521 + L1MB4 LINE L1 5413 5877 -303 2018 106 44 0 chr1 30402832 30403135 -212261218 + AluSg SINE Alu 1 310 0 4513 144 22 18 chr1 30403135 30403441 -212260912 + L1MB4 LINE L1 5877 6180 0 4513 166 78 71 chr1 30403441 30403471 -212260882 + L1MB4 LINE L1 5307 6180 0 1673 127 94 22 chr1 30403857 30404133 -212260220 - AluJo SINE Alu -16 296 1 316 191 61 116 chr1 30404702 30404849 -212259504 + L1MC5 LINE L1 7199 7337 -624 1105 119 17 28 chr1 30404850 30405027 -212259326 - MER20 DNA MER1_type -1 218 44 611 245 13 63 chr1 30405050 30405287 -212259066 + L1MC5 LINE L1 7344 7568 -393 595 228 157 62 chr1 30405392 30405730 -212258623 + L1MC5 LINE L1 7556 7925 -36 2269 123 0 0 chr1 30407243 30407545 -212256808 + AluSx SINE Alu 1 302 -10 1725 164 26 29 chr1 30407597 30407908 -212256445 + AluJo SINE Alu 1 310 -2 2137 132 0 0 chr1 30407908 30408203 -212256150 + AluSx SINE Alu 1 295 -17 424 226 39 0 chr1 30408232 30408334 -212256019 + L1MA10 LINE L1 6229 6334 0 893 84 0 0 chr1 30408897 30409016 -212255337 + AluY SINE Alu 188 306 -5 241 261 0 15 chr1 30409637 30409702 -212254651 + L2 LINE L2 3250 3313 0 2202 112 3 19 chr1 30409708 30410020 -212254333 + AluSx SINE Alu 1 307 -5 558 206 0 53 chr1 30410227 30410358 -212253995 - L2 LINE L2 -5 3308 3185 2148 138 3 3 chr1 30411376 30411688 -212252665 + AluSx SINE Alu 1 312 0 205 218 18 36 chr1 30412174 30412229 -212252124 - MIR SINE MIR -117 145 92 2206 108 6 19 chr1 30412344 30412660 -212251693 + AluSx SINE Alu 1 312 0 1970 108 30 20 chr1 30413168 30413464 -212250889 - AluSq SINE Alu -14 299 1 422 219 53 86 chr1 30413846 30413997 -212250356 - L2 LINE L2 0 3313 3168 359 24 0 0 chr1 30414130 30414171 -212250182 + (TG)n Simple_repeat Simple_repeat 1 41 0 663 301 150 31 chr1 30414563 30415011 -212249342 + L2 LINE L2 2805 3305 -8 2198 116 0 3 chr1 30415057 30415359 -212248994 - AluSx SINE Alu -11 301 1 286 226 86 32 chr1 30415505 30415598 -212248755 - L2 LINE L2 0 3313 3216 2413 73 0 0 chr1 30415615 30415902 -212248451 - AluY SINE Alu -24 287 1 5621 150 63 40 chr1 30415909 30416179 -212248174 + L1MC3 LINE L1 6460 6722 -1063 1450 125 0 10 chr1 30416179 30416387 -212247966 - AluJb SINE Alu -22 290 85 5621 150 63 40 chr1 30416387 30417225 -212247128 + L1MC3 LINE L1 6722 7594 -191 1062 147 54 5 chr1 30417225 30417409 -212246944 + L1MC2 LINE L1 6137 6329 -15 2220 128 0 0 chr1 30417409 30417721 -212246632 + AluSx SINE Alu 1 312 0 25 0 0 0 chr1 30417726 30417751 -212246602 + AT_rich Low_complexity Low_complexity 1 25 0 2496 80 0 0 chr1 30417820 30418121 -212246232 + AluY SINE Alu 1 301 -10 24 32 0 0 chr1 30418784 30418815 -212245538 + AT_rich Low_complexity Low_complexity 1 31 0 222 253 287 11 chr1 30419083 30419170 -212245183 + MIR SINE MIR 16 126 -82 2263 110 0 0 chr1 30419363 30419663 -212244690 + AluSx SINE Alu 1 300 -12 865 106 8 0 chr1 30419792 30419915 -212244438 + AluSg/x SINE Alu 163 286 -26 25 0 0 0 chr1 30419915 30419940 -212244413 + AT_rich Low_complexity Low_complexity 1 25 0 603 289 122 10 chr1 30420678 30420875 -212243478 + MIR SINE MIR 31 249 -13 2321 88 7 10 chr1 30421005 30421313 -212243040 - AluSp SINE Alu -6 307 1 1852 164 7 10 chr1 30421588 30421887 -212242466 + AluJb SINE Alu 1 298 -14 249 236 28 14 chr1 30421985 30422057 -212242296 + GA-rich Low_complexity Low_complexity 5 77 0 331 267 8 15 chr1 30423673 30423804 -212240549 - L1ME4a LINE L1 -2 6119 5990 773 194 0 22 chr1 30423837 30423971 -212240382 - FLAM_C SINE Alu -2 131 1 180 0 0 0 chr1 30424029 30424049 -212240304 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1074 202 47 0 chr1 30424073 30424266 -212240087 - AluJo SINE Alu -102 210 9 1475 94 0 0 chr1 30424529 30424710 -212239643 - AluSx SINE Alu -131 181 1 222 227 213 0 chr1 30425129 30425204 -212239149 - MIR SINE MIR -119 143 53 2317 107 3 0 chr1 30425261 30425570 -212238783 + AluSg SINE Alu 1 310 0 2345 68 10 0 chr1 30426374 30426670 -212237683 + AluSp SINE Alu 1 299 -14 246 247 154 14 chr1 30426760 30426856 -212237497 - MIR SINE MIR -97 111 2 531 222 37 30 chr1 30427432 30427567 -212236786 - MER91B DNA MER1_type 0 190 55 218 320 60 0 chr1 30427687 30427787 -212236566 + MIR3 SINE MIR 93 198 -10 1680 176 0 35 chr1 30428449 30428762 -212235591 + AluJb SINE Alu 1 302 -10 1139 164 82 5 chr1 30429274 30429481 -212234872 + AluJb SINE Alu 84 306 -6 1505 191 0 53 chr1 30429545 30429699 -212234654 - AluJo SINE Alu -25 287 155 2020 123 31 0 chr1 30429699 30429991 -212234362 - AluSx SINE Alu -11 301 1 1505 191 0 53 chr1 30429991 30430139 -212234214 - AluJo SINE Alu -157 155 1 2248 93 7 0 chr1 30430360 30430649 -212233704 - AluSx SINE Alu -21 291 1 2169 109 0 0 chr1 30430669 30430954 -212233399 - AluY SINE Alu -26 285 1 2480 171 44 17 chr1 30430954 30431434 -212232919 - L1MB2 LINE L1 -43 6128 5636 597 185 0 0 chr1 30431471 30431563 -212232790 - FLAM_A SINE Alu -46 96 5 491 185 0 0 chr1 30431567 30431648 -212232705 - L1MB2 LINE L1 -604 5567 5487 1284 83 0 0 chr1 30431657 30431813 -212232540 - AluY SINE Alu -30 281 126 1457 176 24 41 chr1 30431827 30432122 -212232231 - AluJo SINE Alu -22 290 1 266 294 192 7 chr1 30432282 30432428 -212231925 + MIR SINE MIR 68 240 -22 21 0 0 0 chr1 30432689 30432710 -212231643 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr1 30433839 30433866 -212230487 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 2279 111 0 0 chr1 30434459 30434756 -212229597 - AluSg1 SINE Alu -11 298 2 203 258 152 0 chr1 30434952 30435018 -212229335 - MER5C DNA MER1_type -248 76 1 2246 133 8 51 chr1 30436108 30436460 -212227893 - MER1B DNA MER1_type 0 337 1 403 326 41 51 chr1 30436575 30436771 -212227582 + MIR3 SINE MIR 6 199 -9 22 0 0 0 chr1 30437481 30437503 -212226850 + AT_rich Low_complexity Low_complexity 1 22 0 1150 204 170 1 chr1 30437952 30438317 -212226036 + MLT1F1 LTR MaLR 1 426 -116 1652 134 53 4 chr1 30438322 30438568 -212225785 + AluSx SINE Alu 1 258 -54 1470 189 37 37 chr1 30438590 30438886 -212225467 + AluJo SINE Alu 1 296 -16 313 94 31 62 chr1 30438890 30438954 -212225399 + L1MB3 LINE L1 6109 6170 -13 1790 166 0 35 chr1 30439028 30439347 -212225006 + AluJb SINE Alu 1 308 -4 1243 190 23 31 chr1 30439360 30439618 -212224735 + AluSx SINE Alu 1 256 -56 185 65 32 0 chr1 30439661 30439692 -212224661 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 535 212 4 91 chr1 30439706 30439782 -212224571 + MLT1F LTR MaLR 426 507 -147 2241 115 0 0 chr1 30439782 30440078 -212224275 - AluSx SINE Alu -16 296 1 535 212 4 91 chr1 30440078 30440139 -212224214 + MLT1F LTR MaLR 507 654 0 734 198 0 0 chr1 30440810 30440926 -212223427 - FLAM_C SINE Alu -16 117 2 423 239 154 34 chr1 30441794 30441911 -212222442 - MIR3 SINE MIR -41 167 37 715 204 13 25 chr1 30442030 30442187 -212222166 + MER5A DNA MER1_type 35 189 0 241 353 86 9 chr1 30442218 30442334 -212222019 + L2 LINE L2 3143 3267 -5 536 129 12 0 chr1 30442498 30442583 -212221770 + AluJ/FLAM SINE Alu 1 86 -226 2192 110 3 10 chr1 30443095 30443396 -212220957 - AluSq SINE Alu -14 299 1 1855 159 21 0 chr1 30443805 30444088 -212220265 - AluJb SINE Alu -23 289 1 2182 141 6 0 chr1 30445369 30445682 -212218671 - 7SLRNA srpRNA srpRNA -5 315 1 745 283 92 0 chr1 30445745 30446028 -212218325 - L1ME4a LINE L1 -234 5887 5579 499 210 142 45 chr1 30446365 30446541 -212217812 + MIR SINE MIR 17 209 -53 1727 99 8 36 chr1 30447124 30447404 -212216949 - AluSx SINE Alu 0 312 54 1022 123 19 0 chr1 30447410 30447564 -212216789 + AluSx SINE Alu 1 157 -155 23 86 0 0 chr1 30448286 30448344 -212216009 + AT_rich Low_complexity Low_complexity 1 58 0 2262 102 0 0 chr1 30449317 30449611 -212214742 - AluSx SINE Alu -18 294 1 255 325 193 28 chr1 30450440 30450864 -212213489 - L2 LINE L2 -338 2976 2483 21 36 0 0 chr1 30451236 30451264 -212213089 + AT_rich Low_complexity Low_complexity 1 28 0 243 167 0 37 chr1 30451447 30451501 -212212852 - L1MC4a LINE L1 -1871 5937 5886 2152 102 26 13 chr1 30451657 30451961 -212212392 + AluSq SINE Alu 1 308 -5 24 77 0 0 chr1 30452229 30452281 -212212072 + AT_rich Low_complexity Low_complexity 1 52 0 978 282 249 47 chr1 30453636 30454576 -212209777 - L2 LINE L2 -691 2623 1494 2232 125 0 0 chr1 30454578 30454891 -212209462 + AluSq SINE Alu 1 313 0 1397 103 0 0 chr1 30454891 30455076 -212209277 + AluSg/x SINE Alu 123 307 -3 212 0 36 0 chr1 30455157 30455185 -212209168 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 723 176 0 0 chr1 30455185 30455304 -212209049 - FLAM_C SINE Alu -22 121 3 611 253 43 43 chr1 30455473 30455659 -212208694 + MER5A DNA MER1_type 2 187 -2 2439 79 0 0 chr1 30456345 30456637 -212207716 - AluSg SINE Alu -16 294 3 270 26 0 0 chr1 30456766 30456804 -212207549 - L1MA7 LINE L1 -29 6262 6225 449 186 0 0 chr1 30456844 30456930 -212207423 - L1MA7 LINE L1 -140 6151 6066 2102 129 0 0 chr1 30457052 30457368 -212206985 + AluSx SINE Alu 1 316 0 871 257 60 16 chr1 30457705 30457954 -212206399 + MIR SINE MIR 2 261 -1 2004 141 7 0 chr1 30458269 30458567 -212205786 - AluJb SINE Alu -12 300 1 230 346 47 9 chr1 30458758 30458865 -212205488 + MER5A DNA MER1_type 1 122 -67 2168 142 72 2 chr1 30459371 30459773 -212204580 + L1MB3 LINE L1 5753 6182 -1 903 307 123 22 chr1 30459774 30460311 -212204042 - L2 LINE L2 -1685 1629 1039 1517 166 60 33 chr1 30460327 30460629 -212203724 - AluJo SINE Alu -2 310 1 1376 126 20 0 chr1 30460640 30460838 -212203515 - AluSg/x SINE Alu -19 293 92 263 360 54 11 chr1 30460843 30461029 -212203324 - L2 LINE L2 -2301 1013 820 2520 59 0 3 chr1 30461129 30461434 -212202919 - AluY SINE Alu -6 305 2 288 348 11 0 chr1 30461581 30461670 -212202683 + L2 LINE L2 3181 3270 -2 353 296 74 17 chr1 30462920 30463096 -212201257 + L1M4 LINE L1 5008 5193 -953 673 225 0 52 chr1 30463098 30463271 -212201082 + L1MC3 LINE L1 6163 6326 -1459 1935 135 0 30 chr1 30463672 30463998 -212200355 - AluSx SINE Alu 0 317 1 185 0 40 0 chr1 30464170 30464195 -212200158 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2919 189 53 42 chr1 30464670 30464902 -212199451 + L1M4 LINE L1 4182 4410 -1736 2085 118 4 0 chr1 30464902 30465207 -212199146 + AluSx SINE Alu 1 306 0 2919 189 53 42 chr1 30465207 30465500 -212198853 + L1M4 LINE L1 4410 4698 -1448 2052 120 23 7 chr1 30465500 30465800 -212198553 - AluSx SINE Alu -7 305 1 2919 189 53 42 chr1 30465800 30466127 -212198226 + L1M4 LINE L1 4698 5046 -1100 2069 100 0 0 chr1 30466158 30466427 -212197926 + AluSg1 SINE Alu 1 269 -40 1471 186 4 0 chr1 30466427 30466680 -212197673 + AluJo SINE Alu 59 312 0 534 210 7 14 chr1 30466690 30466828 -212197525 + L1MB7 LINE L1 6048 6184 0 249 242 65 0 chr1 30467038 30467100 -212197253 + MIR SINE MIR 108 173 -89 229 350 0 38 chr1 30468029 30468109 -212196244 + L3 LINE CR1 88 164 -1413 1360 152 44 12 chr1 30468114 30468364 -212195989 + AluJb SINE Alu 43 300 -12 363 357 21 14 chr1 30468425 30468565 -212195788 + L3 LINE CR1 208 348 -1229 2298 104 0 13 chr1 30468958 30469266 -212195087 - AluSx SINE Alu -8 304 1 336 151 0 0 chr1 30469557 30469610 -212194743 + MER74B LTR ERVL 1 53 -569 1120 237 42 48 chr1 30469646 30470001 -212194352 + MER74B LTR ERVL 211 563 -59 25 31 0 0 chr1 30470627 30470659 -212193694 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr1 30471002 30471045 -212193308 + AT_rich Low_complexity Low_complexity 1 43 0 2159 98 7 0 chr1 30473211 30473496 -212190857 - AluSx SINE Alu -7 305 19 2207 96 0 0 chr1 30474229 30474530 -212189823 + AluSc SINE Alu 1 301 0 2606 49 0 0 chr1 30475087 30475392 -212188961 - AluY SINE Alu -4 307 3 22 35 0 0 chr1 30475522 30475551 -212188802 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chr1 30476153 30476189 -212188164 + (TG)n Simple_repeat Simple_repeat 2 37 0 1989 127 10 36 chr1 30476214 30476521 -212187832 + AluSx SINE Alu 1 299 -13 40 0 0 0 chr1 30476786 30476826 -212187527 + AT_rich Low_complexity Low_complexity 1 40 0 1958 146 30 0 chr1 30476848 30477143 -212187210 - AluSx SINE Alu -8 304 1 180 0 0 0 chr1 30477855 30477875 -212186478 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 183 42 0 0 chr1 30477874 30477898 -212186455 + (TA)n Simple_repeat Simple_repeat 1 24 0 227 114 23 0 chr1 30477899 30477943 -212186410 + Alu SINE Alu 251 295 -4 426 288 25 66 chr1 30478100 30478148 -212186205 - MIR SINE MIR -6 256 208 877 149 0 8 chr1 30478148 30478282 -212186071 - FLAM_A SINE Alu 0 133 1 426 288 25 66 chr1 30478282 30478431 -212185922 - MIR SINE MIR -54 208 67 568 121 26 43 chr1 30478468 30478524 -212185829 + L1MB4 LINE L1 6067 6122 -58 3115 176 66 43 chr1 30478524 30478769 -212185584 - MER44D DNA MER2_type -1882 605 367 2200 91 35 0 chr1 30478769 30479056 -212185297 - AluSc SINE Alu -12 297 1 3115 176 66 43 chr1 30479056 30479218 -212185135 - MER44D DNA MER2_type -2120 367 210 2263 89 7 20 chr1 30479218 30479521 -212184832 + AluSg SINE Alu 1 299 -11 3115 176 66 43 chr1 30479521 30479827 -212184526 - MER44D DNA MER2_type -2277 210 3 568 121 26 43 chr1 30479827 30479886 -212184467 + L1MB4 LINE L1 6122 6180 0 22 0 0 0 chr1 30480048 30480070 -212184283 + AT_rich Low_complexity Low_complexity 1 22 0 206 333 120 0 chr1 30481380 30481497 -212182856 - MIR3 SINE MIR -43 165 35 2171 71 18 11 chr1 30481567 30481848 -212182505 + AluSq SINE Alu 17 299 -14 23 0 0 0 chr1 30481957 30481980 -212182373 + AT_rich Low_complexity Low_complexity 1 23 0 1941 138 9 31 chr1 30482282 30482601 -212181752 - AluSx SINE Alu 0 312 1 1692 118 12 4 chr1 30482658 30482903 -212181450 - AluSx SINE Alu -65 247 1 399 150 230 26 chr1 30482945 30483058 -212181295 + FAM SINE Alu 40 175 0 190 186 0 34 chr1 30483083 30483142 -212181211 + GA-rich Low_complexity Low_complexity 3 59 0 1246 205 198 36 chr1 30483222 30483636 -212180717 + MLT1D LTR MaLR 25 505 0 2023 126 3 7 chr1 30483772 30484073 -212180280 + AluSx SINE Alu 1 300 -12 2161 121 0 3 chr1 30484429 30484727 -212179626 - AluSx SINE Alu -15 297 1 560 181 0 0 chr1 30485760 30485865 -212178488 + L1MD3 LINE L1 7731 7835 -160 2783 170 77 66 chr1 30485995 30486607 -212177746 + L1ME1 LINE L1 5438 6042 -124 459 0 0 0 chr1 30486607 30486658 -212177695 + (TA)n Simple_repeat Simple_repeat 1 51 0 2296 110 0 13 chr1 30486658 30486831 -212177522 - AluSx SINE Alu -6 306 137 1987 150 0 7 chr1 30486831 30487131 -212177222 - AluSx SINE Alu -14 298 1 2296 110 0 13 chr1 30487131 30487267 -212177086 - AluSx SINE Alu -175 137 1 2783 170 77 66 chr1 30487267 30487365 -212176988 + L1ME1 LINE L1 6041 6157 -9 481 230 40 0 chr1 30487881 30487981 -212176372 + MLT1B LTR MaLR 287 390 0 269 130 0 0 chr1 30487995 30488041 -212176312 - L1M4b LINE L1 -5298 1248 1203 405 157 0 0 chr1 30488041 30488111 -212176242 - FAM SINE Alu -5 180 111 4578 219 30 36 chr1 30488148 30489254 -212175099 - L1M4b LINE L1 -5337 1205 107 1884 106 85 14 chr1 30489960 30490243 -212174110 + AluSx SINE Alu 1 303 -9 727 123 98 25 chr1 30490459 30490581 -212173772 - FLAM_C SINE Alu 0 133 3 305 326 98 53 chr1 30490879 30491124 -212173229 - HAL1 LINE L1 -1236 1271 1016 226 291 159 33 chr1 30492477 30492628 -212171725 - LTR67 LTR ERVL -32 525 356 992 100 0 14 chr1 30492836 30492849 -212171504 - L1PA10 LINE L1 -9 6159 6147 198 0 0 0 chr1 30492849 30492871 -212171482 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 992 100 0 14 chr1 30492871 30492997 -212171356 - L1PA10 LINE L1 -21 6147 6022 517 304 45 95 chr1 30493363 30493764 -212170589 + L2 LINE L2 2871 3251 -21 204 97 0 0 chr1 30493767 30493798 -212170555 + (TTG)n Simple_repeat Simple_repeat 2 32 0 345 237 35 24 chr1 30493829 30493928 -212170425 + MIR SINE MIR 68 167 -41 186 264 207 16 chr1 30493958 30494079 -212170274 + L2 LINE L2 1917 2060 -1254 427 295 146 48 chr1 30494094 30494389 -212169964 + L2 LINE L2 2432 2755 -559 248 240 13 80 chr1 30494456 30494531 -212169822 - MIR SINE MIR -99 163 94 215 242 70 94 chr1 30494635 30494763 -212169590 + L2 LINE L2 2921 3045 -268 399 250 65 18 chr1 30495206 30495374 -212168979 + HERVL LTR ERVL 4669 4844 -810 298 304 35 35 chr1 30495498 30495613 -212168740 + HERVL LTR ERVL 5038 5152 -502 1809 189 27 32 chr1 30496092 30496319 -212168034 - LTR53 LTR ERVL -145 374 148 8908 28 15 2 chr1 30496319 30498143 -212166210 - L1PA4 LINE L1 -6 6149 4299 1809 189 27 32 chr1 30498143 30498291 -212166062 - LTR53 LTR ERVL -371 148 1 2115 142 10 0 chr1 30498448 30498750 -212165603 + AluJo SINE Alu 1 305 -7 209 33 33 0 chr1 30499136 30499166 -212165187 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 1141 224 123 41 chr1 30499166 30499292 -212165061 + L2 LINE L2 2539 2653 -660 2455 100 0 0 chr1 30499292 30499602 -212164751 - AluSx SINE Alu -2 310 1 1141 224 123 41 chr1 30499602 30499838 -212164515 + L2 LINE L2 2653 2868 -445 2298 125 0 0 chr1 30499838 30500149 -212164204 - AluSx SINE Alu -1 311 1 1141 224 123 41 chr1 30500149 30500488 -212163865 + L2 LINE L2 2868 3313 0 307 265 15 0 chr1 30500494 30500562 -212163791 - MIR SINE MIR -93 115 47 415 295 55 49 chr1 30500715 30500898 -212163455 + MIR SINE MIR 3 186 -76 974 264 62 52 chr1 30500905 30501159 -212163194 + L1M4 LINE L1 4156 4406 -1740 2079 105 3 69 chr1 30501159 30501493 -212162860 - AluSx SINE Alu 0 312 1 974 264 62 52 chr1 30501493 30501851 -212162502 + L1M4 LINE L1 4406 4774 -1372 1233 161 0 18 chr1 30501851 30502068 -212162285 + AluSx SINE Alu 2 214 -98 2335 90 7 0 chr1 30502169 30502459 -212161894 - AluSp SINE Alu -21 292 1 621 256 54 6 chr1 30502459 30502627 -212161726 - MIR SINE MIR -59 203 28 1767 172 0 46 chr1 30502630 30502956 -212161397 - AluJb SINE Alu -1 311 1 24 0 0 0 chr1 30502958 30502982 -212161371 + AT_rich Low_complexity Low_complexity 1 24 0 252 0 0 0 chr1 30503120 30503148 -212161205 + (TC)n Simple_repeat Simple_repeat 2 29 0 842 182 0 0 chr1 30503150 30503282 -212161071 - FLAM_C SINE Alu 0 133 2 213 196 0 0 chr1 30503678 30503724 -212160629 + GA-rich Low_complexity Low_complexity 5 50 0 398 267 0 0 chr1 30503783 30503873 -212160480 - MIR SINE MIR -123 139 50 383 285 28 62 chr1 30504064 30504243 -212160110 - L1M4 LINE L1 -1326 4820 4648 2234 91 10 14 chr1 30504465 30504761 -212159592 + AluSp SINE Alu 1 295 -18 1180 167 0 0 chr1 30504769 30504943 -212159410 + AluJb SINE Alu 1 174 -138 27 29 0 0 chr1 30507176 30507210 -212157143 + AT_rich Low_complexity Low_complexity 1 34 0 331 300 120 11 chr1 30507239 30507522 -212156831 - L1MC/D LINE L1 -2204 5581 5268 658 252 63 90 chr1 30507561 30507590 -212156763 - L1M4 LINE L1 -947 5199 5171 1912 119 48 14 chr1 30507590 30507884 -212156469 - AluSq SINE Alu -9 304 1 1899 161 0 0 chr1 30507886 30508178 -212156175 - AluJo SINE Alu -20 292 1 1335 189 124 0 chr1 30508179 30508444 -212155909 - AluJo SINE Alu -3 299 2 658 252 63 90 chr1 30508444 30508559 -212155794 - L1M4 LINE L1 -976 5170 5053 1497 165 90 0 chr1 30508559 30508825 -212155528 + AluJo SINE Alu 1 290 -22 658 252 63 90 chr1 30508825 30509059 -212155294 - L1M4 LINE L1 -1093 5053 4357 251 120 0 20 chr1 30509192 30509242 -212155111 + (CCCCCT)n Simple_repeat Simple_repeat 2 50 0 280 232 120 56 chr1 30509889 30510031 -212154322 - MIR SINE MIR -12 250 100 524 267 82 30 chr1 30510388 30510620 -212153733 + MIR SINE MIR 18 261 -1 2448 109 0 0 chr1 30510818 30511130 -212153223 - AluSx SINE Alu 0 312 1 1908 138 74 0 chr1 30511410 30511693 -212152660 + AluJb SINE Alu 1 304 -8 2305 109 0 0 chr1 30511696 30511999 -212152354 + AluY SINE Alu 1 303 -8 215 339 54 39 chr1 30512273 30512403 -212151950 + MIR SINE MIR 107 238 -24 233 250 0 69 chr1 30512785 30512857 -212151496 + MIR SINE MIR 26 92 -170 1062 161 5 36 chr1 30512993 30513185 -212151168 + AluJo SINE Alu 2 187 -125 1575 96 0 0 chr1 30513197 30513396 -212150957 + AluSg/x SINE Alu 112 310 -2 225 295 26 13 chr1 30513555 30513633 -212150720 + MIR SINE MIR 65 143 -119 940 167 61 10 chr1 30513667 30513865 -212150488 - MER3 DNA MER1_type 0 209 2 392 225 41 80 chr1 30514034 30514185 -212150168 + MIR3 SINE MIR 44 187 -34 225 193 47 15 chr1 30514361 30514430 -212149923 + L2 LINE L2 2901 2977 -298 2436 74 0 3 chr1 30514448 30514744 -212149609 - AluSp SINE Alu -18 295 1 598 210 8 17 chr1 30514746 30514865 -212149488 - AluJo/FLAM SINE Alu -184 128 11 418 253 238 21 chr1 30514875 30515156 -212149197 + L2 LINE L2 2972 3313 0 227 253 0 58 chr1 30515139 30515226 -212149127 + MIR SINE MIR 172 253 -9 * 554 246 8 8 chr1 30515253 30515371 -212148982 + MER5B DNA MER1_type 60 177 -1 435 287 143 19 chr1 30515393 30515602 -212148751 - MIR SINE MIR 0 262 28 1864 132 45 7 chr1 30515606 30515893 -212148460 - AluJo SINE Alu -9 303 6 258 212 35 124 chr1 30516395 30516508 -212147845 - MIR3 SINE MIR -93 115 13 230 299 109 22 chr1 30517120 30517304 -212147049 - L2 LINE L2 -552 2762 2563 630 218 0 0 chr1 30517315 30517425 -212146928 + FRAM SINE Alu 1 109 -67 2345 105 3 0 chr1 30517433 30517738 -212146615 + AluSp SINE Alu 1 306 -7 349 123 41 0 chr1 30517738 30517811 -212146542 + GA-rich Low_complexity Low_complexity 1 76 0 308 273 68 0 chr1 30518419 30518507 -212145846 - MIR SINE MIR -67 195 102 23 54 0 0 chr1 30518648 30518685 -212145668 + AT_rich Low_complexity Low_complexity 1 37 0 613 218 16 8 chr1 30518895 30519019 -212145334 - L2 LINE L2 0 3313 3189 2618 44 0 0 chr1 30519120 30519417 -212144936 + AluY SINE Alu 2 298 -13 2268 92 14 3 chr1 30519626 30519918 -212144435 - AluSp SINE Alu -18 295 1 909 109 0 36 chr1 30519950 30520087 -212144266 + FLAM_C SINE Alu 2 133 0 536 339 63 5 chr1 30520090 30520311 -212144042 + MIR SINE MIR 26 259 -3 429 222 105 46 chr1 30520382 30520535 -212143818 + MIR SINE MIR 101 262 0 282 204 161 65 chr1 30521136 30521229 -212143124 - MIR SINE MIR -70 138 37 432 229 106 70 chr1 30521880 30522107 -212142246 + MIR SINE MIR 22 256 -6 281 281 34 32 chr1 30522671 30522874 -212141479 + MIR SINE MIR 13 262 0 1994 134 17 7 chr1 30523299 30523591 -212140762 + AluJb SINE Alu 1 295 -17 378 184 0 0 chr1 30524292 30524368 -212139985 + (CA)n Simple_repeat Simple_repeat 2 77 0 316 160 120 0 chr1 30524439 30524514 -212139839 + L1MC/D LINE L1 5734 5817 -1991 2309 93 3 0 chr1 30524522 30524811 -212139542 + AluSg SINE Alu 1 290 -20 958 146 7 7 chr1 30524821 30524972 -212139381 + AluJo SINE Alu 1 151 -161 1575 149 0 16 chr1 30524972 30525221 -212139132 + AluJb SINE Alu 60 304 -8 1792 173 6 13 chr1 30525246 30525559 -212138794 + AluJb SINE Alu 1 311 -1 2159 91 0 0 chr1 30525697 30525972 -212138381 - AluY SINE Alu -36 275 1 264 234 0 16 chr1 30526301 30526365 -212137988 + Charlie8 DNA MER1_type 117 179 -2238 250 128 0 0 chr1 30526430 30526469 -212137884 + Charlie8 DNA MER1_type 2368 2406 -11 2229 114 7 7 chr1 30526525 30526833 -212137520 + AluSx SINE Alu 1 308 -4 220 264 0 0 chr1 30527153 30527206 -212137147 + L2 LINE L2 2836 2888 -425 921 216 0 0 chr1 30527208 30527384 -212136969 - FRAM SINE Alu -5 171 1 2173 99 38 0 chr1 30527404 30527696 -212136657 + AluSp SINE Alu 1 303 -10 426 197 0 0 chr1 30527709 30527785 -212136568 + AluJ/FLAM SINE Alu 1 76 -236 622 112 0 60 chr1 30527785 30527901 -212136452 - Tigger1 DNA MER2_type -1681 737 629 570 127 0 0 chr1 30527953 30528032 -212136321 - AluJ/FLAM SINE Alu -232 80 2 1825 119 28 0 chr1 30528033 30528319 -212136034 - Tigger1 DNA MER2_type -1601 817 524 2653 58 0 3 chr1 30528319 30528629 -212135724 - AluSc SINE Alu 0 309 1 203 265 20 0 chr1 30528639 30528688 -212135665 + MER5B DNA MER1_type 127 176 -2 2220 123 13 0 chr1 30528692 30529000 -212135353 - AluSx SINE Alu 0 312 1 230 330 38 18 chr1 30529286 30529461 -212134892 + MIR3 SINE MIR 34 211 -48 1336 159 183 0 chr1 30529547 30529667 -212134686 - AluJb SINE Alu -5 297 200 216 0 0 0 chr1 30529667 30529691 -212134662 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1336 159 183 0 chr1 30529691 30529821 -212134532 - AluJb SINE Alu -102 200 1 235 244 8 102 chr1 30529922 30530049 -212134304 + LTR67 LTR ERVL 429 543 -14 21 0 0 0 chr1 30530051 30530072 -212134281 + AT_rich Low_complexity Low_complexity 1 21 0 745 152 67 96 chr1 30530361 30530477 -212133876 - MER5A DNA MER1_type 0 189 78 2386 84 3 0 chr1 30530477 30530775 -212133578 - AluSg SINE Alu -11 299 1 745 152 67 96 chr1 30530775 30530836 -212133517 - MER5A DNA MER1_type -111 78 17 2273 120 0 0 chr1 30531086 30531385 -212132968 - AluSx SINE Alu -13 299 1 609 194 47 16 chr1 30531755 30531884 -212132469 - FLAM_A SINE Alu 0 133 1 243 288 106 38 chr1 30532244 30532376 -212131977 + MIR3 SINE MIR 30 170 -38 2347 107 7 0 chr1 30532440 30532738 -212131615 - AluSx SINE Alu -12 300 1 188 311 78 48 chr1 30532817 30532920 -212131433 + L2 LINE L2 3034 3139 -174 275 241 0 17 chr1 30533814 30533872 -212130481 + MIR3 SINE MIR 113 169 -39 2457 72 3 3 chr1 30535489 30535795 -212128558 + AluSx SINE Alu 1 306 -6 611 172 45 30 chr1 30535796 30535930 -212128423 + MER4D LTR ERV1 768 903 0 2351 92 6 19 chr1 30535997 30536314 -212128039 + AluSp SINE Alu 1 313 0 1440 74 6 0 chr1 30536314 30536490 -212127863 + AluSp SINE Alu 134 310 -3 195 214 24 24 chr1 30536549 30536591 -212127762 - L2 LINE L2 -75 3238 3197 2052 114 37 0 chr1 30536695 30536988 -212127365 + AluSg SINE Alu 1 303 0 1062 157 0 89 chr1 30537101 30537240 -212127113 + L1MB5 LINE L1 5901 6012 -162 1727 110 107 4 chr1 30537240 30537503 -212126850 + AluSg SINE Alu 1 290 -20 1062 157 0 89 chr1 30537503 30537599 -212126754 + L1MB5 LINE L1 6012 6115 -59 275 133 0 0 chr1 30537602 30537647 -212126706 + AluJb SINE Alu 1 45 -257 1469 113 24 5 chr1 30537647 30537859 -212126494 + AluJb SINE Alu 88 303 -9 344 203 0 0 chr1 30537926 30537985 -212126368 + L1MB5 LINE L1 6116 6174 0 329 232 24 0 chr1 30538631 30538717 -212125636 - MIR SINE MIR -61 147 75 328 240 125 31 chr1 30538740 30538836 -212125517 + L2 LINE L2 3209 3313 0 774 192 64 19 chr1 30538898 30539054 -212125299 + FRAM SINE Alu 1 163 -3 2258 64 43 0 chr1 30539074 30539356 -212124997 + AluY SINE Alu 1 294 -17 2110 75 11 11 chr1 30539486 30539765 -212124588 - AluSq SINE Alu -34 279 1 1438 160 126 8 chr1 30539847 30540109 -212124244 - AluJo SINE Alu -18 294 2 802 140 0 85 chr1 30540405 30540569 -212123784 + AluJb SINE Alu 156 305 -7 759 154 8 46 chr1 30540632 30540762 -212123591 - FLAM_C SINE Alu -8 125 1 337 300 9 18 chr1 30540762 30540872 -212123481 - L2 LINE L2 -2 3311 3203 780 147 0 70 chr1 30541090 30541233 -212123120 - FLAM_C SINE Alu 0 133 1 2176 93 3 13 chr1 30541407 30541707 -212122646 - AluSc SINE Alu -12 297 1 561 228 108 12 chr1 30541835 30542002 -212122351 + MIR SINE MIR 31 213 -49 228 254 0 18 chr1 30542039 30542094 -212122259 + L2 LINE L2 3210 3263 -9 1172 138 43 43 chr1 30542427 30542659 -212121694 - MER46A DNA MER2_type -4 232 1 2449 86 0 0 chr1 30542826 30543130 -212121223 - AluSg SINE Alu -6 304 1 643 209 0 43 chr1 30543434 30543573 -212120780 - FLAM_A SINE Alu 0 133 1 788 197 20 7 chr1 30543586 30543753 -212120600 - FRAM SINE Alu 0 169 1 2113 137 3 0 chr1 30543773 30544072 -212120281 - AluSx SINE Alu -12 300 1 198 0 0 0 chr1 30544072 30544094 -212120259 + (A)n Simple_repeat Simple_repeat 1 22 0 2206 92 18 0 chr1 30544689 30544973 -212119380 - AluSg SINE Alu -19 291 3 293 125 0 0 chr1 30544994 30545034 -212119319 - MER57A LTR ERV1 -69 334 295 1890 127 32 35 chr1 30545150 30545195 -212119158 - L1MB4 LINE L1 0 6180 6136 2137 117 10 7 chr1 30545195 30545493 -212118860 + AluSx SINE Alu 1 299 -13 1890 127 32 35 chr1 30545493 30545786 -212118567 - L1MB4 LINE L1 -44 6136 5843 729 244 30 10 chr1 30545874 30546075 -212118278 - L1MC4 LINE L1 -143 7899 7695 266 265 0 0 chr1 30546090 30546158 -212118195 - L1MC4 LINE L1 -281 7761 7694 447 220 35 87 chr1 30546188 30546299 -212118054 - AluJo SINE Alu -79 233 133 2020 121 0 10 chr1 30546299 30546597 -212117756 - AluSg SINE Alu -14 296 2 447 220 35 87 chr1 30546597 30546658 -212117695 - AluJo SINE Alu -179 133 70 192 179 0 0 chr1 30546814 30546853 -212117500 + A-rich Low_complexity Low_complexity 1 39 0 2431 82 3 3 chr1 30546886 30547189 -212117164 - AluSp SINE Alu -10 303 1 2334 88 7 7 chr1 30547253 30547548 -212116805 - AluSx SINE Alu -11 301 7 21 0 0 0 chr1 30548238 30548259 -212116094 + AT_rich Low_complexity Low_complexity 1 21 0 319 229 0 0 chr1 30548615 30548685 -212115668 - MIR SINE MIR -2 260 191 1069 154 17 11 chr1 30548686 30548861 -212115492 - AluSg/x SINE Alu -4 306 131 690 225 39 28 chr1 30548863 30549045 -212115308 - MIR SINE MIR -65 197 14 386 154 0 0 chr1 30549252 30549317 -212115036 + MIR SINE MIR 188 252 -10 1007 97 0 15 chr1 30549944 30550078 -212114275 - FLAM_C SINE Alu -1 132 1 676 147 29 143 chr1 30550246 30550311 -212114042 - MER112 DNA MER1_type -48 212 141 1916 141 0 44 chr1 30550311 30550630 -212113723 + AluJb SINE Alu 1 305 -7 676 147 29 143 chr1 30550630 30550802 -212113551 - MER112 DNA MER1_type -119 141 2 2364 73 3 22 chr1 30550892 30551205 -212113148 - AluSq SINE Alu -6 307 1 889 171 38 67 chr1 30553256 30553388 -212110965 + MIR SINE MIR 30 153 -109 2424 85 0 0 chr1 30553388 30553683 -212110670 + AluSg SINE Alu 1 295 -15 889 171 38 67 chr1 30553683 30553790 -212110563 + MIR SINE MIR 153 262 0 360 0 0 0 chr1 30554705 30554745 -212109608 + (TA)n Simple_repeat Simple_repeat 2 41 0 2078 93 7 4 chr1 30554746 30555026 -212109327 - AluSx SINE Alu 0 312 32 1613 164 11 4 chr1 30555325 30555587 -212108766 + AluJb SINE Alu 9 272 -40 183 42 0 0 chr1 30555608 30555632 -212108721 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 205 247 10 31 chr1 30555659 30555756 -212108597 + A-rich Low_complexity Low_complexity 1 95 0 252 0 0 0 chr1 30555909 30555937 -212108416 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1436 163 133 4 chr1 30556368 30556632 -212107721 - AluJo SINE Alu -14 298 1 2635 37 3 0 chr1 30559158 30559455 -212104898 - AluSp SINE Alu -11 302 5 2131 85 21 3 chr1 30559460 30559743 -212104610 - AluSx SINE Alu -11 301 14 750 168 87 38 chr1 30559887 30559957 -212104396 - MER69 DNA AcHobo 0 2526 2461 1162 131 145 102 chr1 30559957 30560240 -212104113 + AluJo SINE Alu 1 295 -7 750 168 87 38 chr1 30560240 30560434 -212103919 - MER69 DNA AcHobo -65 2461 2205 1064 248 166 24 chr1 30560436 30560600 -212103753 + L2 LINE L2 2460 2599 -714 2087 110 31 0 chr1 30560600 30560892 -212103461 - AluSx SINE Alu -11 301 1 1064 248 166 24 chr1 30560892 30561468 -212102885 + L2 LINE L2 2599 3308 -5 1834 133 97 13 chr1 30561613 30561922 -212102431 - MER7A DNA MER2_type -12 334 2 2258 83 0 24 chr1 30562024 30562348 -212102005 + AluSc SINE Alu 1 317 0 1953 129 26 23 chr1 30562356 30562665 -212101688 + AluSx SINE Alu 1 310 -2 3640 133 19 18 chr1 30562880 30563173 -212101180 + L1MB2 LINE L1 5537 5828 -343 2289 98 7 0 chr1 30563173 30563459 -212100894 + AluSc SINE Alu 3 290 -19 3640 133 19 18 chr1 30563459 30563795 -212100558 + L1MB2 LINE L1 5828 6167 -4 2033 128 10 7 chr1 30564206 30564504 -212099849 + AluSx SINE Alu 2 300 -12 1896 239 108 6 chr1 30564622 30565123 -212099230 - MLT1H1 LTR MaLR -3 552 1 1401 182 6 88 chr1 30566771 30567101 -212097252 + AluJo SINE Alu 1 303 -9 244 179 0 46 chr1 30567105 30567170 -212097183 - L2 LINE L2 -79 3234 3133 2203 113 0 0 chr1 30567445 30567756 -212096597 - AluSq SINE Alu 0 311 1 1837 147 44 3 chr1 30567808 30568101 -212096252 + AluSx SINE Alu 1 305 -7 219 69 0 0 chr1 30568158 30568187 -212096166 + (TTCTCC)n Simple_repeat Simple_repeat 1 29 0 2057 104 14 0 chr1 30568187 30568466 -212095887 - AluSx SINE Alu 0 312 30 1105 193 58 5 chr1 30568497 30568720 -212095633 + Charlie1 DNA MER1_type 1 235 -2526 567 165 6 114 chr1 30568708 30568798 -212095555 + Charlie1 DNA MER1_type 2621 2688 -73 * 2289 90 0 53 chr1 30568798 30569120 -212095233 - AluSx SINE Alu -7 305 1 567 165 6 114 chr1 30569120 30569187 -212095166 + Charlie1 DNA MER1_type 2688 2761 0 2245 94 3 17 chr1 30569766 30570064 -212094289 + AluSx SINE Alu 1 294 -18 2136 142 0 0 chr1 30570148 30570450 -212093903 + AluSx SINE Alu 1 302 -10 361 254 55 9 chr1 30570571 30570685 -212093668 + MIR SINE MIR 21 129 -79 2385 76 6 22 chr1 30570689 30571004 -212093349 - AluSp SINE Alu -3 310 1 184 182 0 0 chr1 30571005 30571038 -212093315 + MIR SINE MIR 115 147 -115 2070 128 13 7 chr1 30571051 30571355 -212092998 + AluSx SINE Alu 1 306 -6 1967 137 41 0 chr1 30571509 30571801 -212092552 + AluSq SINE Alu 1 304 -9 2610 47 0 0 chr1 30571973 30572270 -212092083 + AluY SINE Alu 1 297 -14 2309 107 3 0 chr1 30572774 30573073 -212091280 + AluSx SINE Alu 1 300 -12 1935 147 19 51 chr1 30573083 30573335 -212091018 + L1MB4 LINE L1 5819 6057 -123 2442 82 7 0 chr1 30573335 30573629 -212090724 + AluSc SINE Alu 1 296 -13 1935 147 19 51 chr1 30573629 30573750 -212090603 + L1MB4 LINE L1 6057 6180 0 350 274 59 15 chr1 30573776 30573911 -212090442 + L1MC4 LINE L1 7531 7671 -371 2427 86 0 0 chr1 30573943 30574235 -212090118 + AluSg SINE Alu 1 292 -18 1993 135 13 26 chr1 30574291 30574603 -212089750 + AluJb SINE Alu 1 308 -4 273 284 72 82 chr1 30575121 30575315 -212089038 - MIR SINE MIR -38 224 33 181 339 0 0 chr1 30575739 30575801 -212088552 - MIR SINE MIR -83 179 118 325 242 55 0 chr1 30575872 30575912 -212088441 + MIR SINE MIR 167 203 -59 378 0 0 0 chr1 30575912 30575954 -212088399 + (TG)n Simple_repeat Simple_repeat 2 43 0 325 242 55 0 chr1 30575954 30576004 -212088349 + MIR SINE MIR 203 262 0 281 279 57 29 chr1 30576405 30576444 -212087909 + MIR SINE MIR 113 149 -113 2179 113 0 25 chr1 30576444 30576762 -212087591 + AluSx SINE Alu 1 310 -2 281 279 57 29 chr1 30576762 30576862 -212087491 + MIR SINE MIR 149 256 -6 2269 112 3 3 chr1 30577222 30577535 -212086818 + AluSp SINE Alu 1 313 0 286 309 21 0 chr1 30577537 30577631 -212086722 + L3b LINE CR1 1139 1234 -349 625 225 73 53 chr1 30577758 30577909 -212086444 - MER69A DNA AcHobo -22 155 2 1371 230 130 54 chr1 30578142 30578673 -212085680 - MLT1E LTR MaLR 0 567 1 185 351 40 0 chr1 30578674 30578748 -212085605 + L2 LINE L2 3103 3179 -93 296 188 35 238 chr1 30578884 30578969 -212085384 + L1ME LINE L1 5615 5716 -405 1888 122 45 10 chr1 30578969 30579257 -212085096 + AluSx SINE Alu 1 298 -14 296 188 35 238 chr1 30579257 30579427 -212084926 + L1ME LINE L1 5716 5818 -303 2079 90 0 59 chr1 30579440 30579729 -212084624 - AluSg SINE Alu -38 272 1 2097 150 0 3 chr1 30580034 30580347 -212084006 + AluSx SINE Alu 1 312 0 383 242 153 68 chr1 30580755 30581003 -212083350 - MLT1L LTR MaLR -155 460 192 457 226 8 75 chr1 30581129 30581262 -212083091 + MER102b DNA MER1_type 218 341 0 515 267 147 77 chr1 30581286 30581675 -212082678 + MLT1J LTR MaLR 1 416 -95 1191 183 89 0 chr1 30581786 30581999 -212082354 + AluJb SINE Alu 5 236 -76 869 212 0 0 chr1 30581999 30582170 -212082183 + AluJo/FRAM SINE Alu 138 308 0 449 234 0 24 chr1 30582586 30582710 -212081643 - LTR67 LTR ERVL -3 554 434 958 143 18 0 chr1 30582776 30582944 -212081409 - MER5A DNA MER1_type -18 171 1 1697 176 26 158 chr1 30583602 30583653 -212080700 - MER34 LTR ERV1 -3 539 483 2481 94 0 0 chr1 30583653 30583962 -212080391 - AluSx SINE Alu -3 309 1 1697 176 26 158 chr1 30583962 30584198 -212080155 - MER34 LTR ERV1 -59 483 375 2250 105 17 0 chr1 30584198 30584493 -212079860 + AluSq SINE Alu 1 300 -13 1697 176 26 158 chr1 30584493 30584825 -212079528 - MER34 LTR ERV1 -167 375 1 2175 134 0 13 chr1 30584863 30585177 -212079176 + AluSx SINE Alu 1 310 -2 834 211 70 0 chr1 30585328 30585556 -212078797 + L1M4 LINE L1 3830 4073 -2073 732 111 178 72 chr1 30585564 30585698 -212078655 + L1MB7 LINE L1 5966 6125 -59 1947 157 0 19 chr1 30585698 30586011 -212078342 + AluJb SINE Alu 5 311 -1 732 111 178 72 chr1 30586011 30586056 -212078297 + L1MB7 LINE L1 6125 6164 -20 505 126 0 58 chr1 30586062 30586149 -212078204 - AluSg/x SINE Alu -20 290 209 272 146 0 0 chr1 30586149 30586190 -212078163 + U6 snRNA snRNA 65 105 -2 468 191 89 89 chr1 30586218 30586309 -212078044 - MLT1L LTR MaLR -62 553 460 2245 115 0 0 chr1 30586309 30586604 -212077749 - AluSx SINE Alu -17 295 1 468 191 89 89 chr1 30586604 30586669 -212077684 - MLT1L LTR MaLR -154 461 397 721 206 0 8 chr1 30586695 30586821 -212077532 - FLAM_A SINE Alu -8 125 1 600 216 317 5 chr1 30586846 30587045 -212077308 - MLT1K LTR MaLR 0 588 328 2356 98 3 0 chr1 30587062 30587367 -212076986 - AluSq SINE Alu -7 306 1 321 244 13 13 chr1 30587486 30587564 -212076789 - MLT1K LTR MaLR -362 226 149 215 244 35 70 chr1 30587814 30587900 -212076453 - MIR SINE MIR -167 95 13 223 191 0 111 chr1 30587971 30588034 -212076319 - L2 LINE L2 -180 3092 3037 1257 57 0 0 chr1 30588034 30588193 -212076160 + L1P5 LINE L1 5629 5787 -364 2576 77 3 0 chr1 30588193 30588505 -212075848 + AluSp SINE Alu 1 313 0 1717 147 14 35 chr1 30588537 30588822 -212075531 + AluJb SINE Alu 24 302 -10 928 117 0 0 chr1 30588822 30588959 -212075394 - Tigger1 DNA MER2_type -459 1959 1823 1295 178 9 9 chr1 30588959 30589178 -212075175 + AluSx SINE Alu 1 219 -93 2431 78 5 101 chr1 30589178 30589537 -212074816 - Tigger1 DNA MER2_type -581 1837 1526 2171 129 0 13 chr1 30589537 30589848 -212074505 + AluSx SINE Alu 1 307 -5 2431 78 5 101 chr1 30589848 30589926 -212074427 - Tigger1 DNA MER2_type -892 1526 1442 665 139 0 70 chr1 30589927 30590042 -212074311 + FLAM_C SINE Alu 2 108 -35 2409 91 0 0 chr1 30590676 30590984 -212073369 + AluSc SINE Alu 1 308 -1 2483 57 0 0 chr1 30591621 30591919 -212072434 - AluY SINE Alu -13 298 1 1856 156 0 7 chr1 30591949 30592244 -212072109 + AluJo SINE Alu 1 293 -19 268 170 0 0 chr1 30592245 30592292 -212072061 - Tigger1 DNA MER2_type -2371 47 1 * 586 246 15 0 chr1 30592292 30592421 -212071932 - MER2 DNA MER2_type -214 131 1 186 247 240 68 chr1 30592429 30592575 -212071778 - L2 LINE L2 -407 2907 2737 1972 148 0 0 chr1 30592575 30592877 -212071476 - AluJb SINE Alu 0 306 5 1211 197 5 0 chr1 30592924 30593147 -212071206 - AluJo SINE Alu -2 310 87 733 187 45 58 chr1 30593159 30593220 -212071133 - AluJo/FRAM SINE Alu -13 289 229 2505 84 0 0 chr1 30593220 30593529 -212070824 + AluY SINE Alu 1 309 -2 733 187 45 58 chr1 30593529 30593622 -212070731 - AluJo/FRAM SINE Alu -73 229 137 636 246 86 21 chr1 30593628 30593815 -212070538 - L2 LINE L2 -592 2722 2524 2553 53 0 0 chr1 30594142 30594445 -212069908 - AluY SINE Alu -8 303 1 2137 113 55 0 chr1 30594554 30594847 -212069506 + AluSq SINE Alu 1 309 -4 381 93 0 0 chr1 30594902 30594956 -212069397 - AluS SINE Alu -227 76 23 287 146 0 0 chr1 30594975 30595016 -212069337 - Alu SINE Alu -261 41 1 207 0 0 0 chr1 30595024 30595047 -212069306 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2580 73 0 0 chr1 30595047 30595347 -212069006 - AluSq SINE Alu -13 300 1 343 271 85 65 chr1 30595348 30595547 -212068806 - L2 LINE L2 -16 3297 3095 640 202 161 57 chr1 30595954 30596040 -212068313 + MIR SINE MIR 50 126 -136 2394 90 0 3 chr1 30596040 30596341 -212068012 - AluSg1 SINE Alu -9 300 1 640 202 161 57 chr1 30596341 30596447 -212067906 + MIR SINE MIR 126 262 0 543 298 41 37 chr1 30596431 30596649 -212067704 - MIR SINE MIR 0 262 44 * 331 308 18 0 chr1 30597327 30597468 -212066885 + L1ME LINE L1 5450 5592 -529 559 284 35 15 chr1 30597561 30597758 -212066595 - MIR SINE MIR -11 251 51 400 327 115 5 chr1 30597829 30598037 -212066316 - MIR SINE MIR -12 250 20 1195 93 17 0 chr1 30598450 30598622 -212065731 - L1PA11 LINE L1 0 6174 6000 2417 67 0 51 chr1 30598771 30599087 -212065266 + AluSg SINE Alu 1 300 -10 1027 241 68 21 chr1 30599735 30599748 -212064605 - MIR SINE MIR -3 259 248 2260 103 0 0 chr1 30599748 30600029 -212064324 + AluSx SINE Alu 1 284 -28 324 0 0 0 chr1 30600029 30600065 -212064288 + (CA)n Simple_repeat Simple_repeat 1 36 0 1027 241 68 21 chr1 30600073 30600295 -212064058 - MIR SINE MIR -14 248 13 324 246 70 13 chr1 30600685 30600810 -212063543 - MIR SINE MIR -78 130 3 386 219 110 0 chr1 30600868 30600950 -212063403 - L2 LINE L2 -5 3308 3218 266 294 0 0 chr1 30601180 30601248 -212063105 + MLT1H LTR MaLR 12 79 -470 872 184 0 112 chr1 30601279 30601426 -212062927 + AluJ SINE Alu 9 128 -184 2552 54 10 0 chr1 30601426 30601724 -212062629 + AluY SINE Alu 7 307 -4 872 184 0 112 chr1 30601724 30601782 -212062571 + AluJ SINE Alu 128 191 -121 3425 129 10 23 chr1 30601784 30601906 -212062447 - MER41E LTR ERV1 0 512 390 2010 156 0 0 chr1 30601906 30602195 -212062158 + AluSx SINE Alu 1 289 -23 3425 129 10 23 chr1 30602195 30602591 -212061762 - MER41E LTR ERV1 -122 390 1 811 113 0 35 chr1 30602672 30602787 -212061566 + AluJ SINE Alu 188 298 -14 1052 167 29 1 chr1 30602788 30602832 -212061521 - LTR32 LTR ERVL -170 301 260 3725 120 51 83 chr1 30602832 30603231 -212061122 + LTR8A LTR ERV1 1 366 -361 1984 164 10 6 chr1 30603231 30603542 -212060811 - AluJo SINE Alu 0 312 1 3725 120 51 83 chr1 30603542 30603891 -212060462 + LTR8A LTR ERV1 366 725 -2 1052 167 29 1 chr1 30603891 30604093 -212060260 - LTR32 LTR ERVL -211 260 15 407 232 29 22 chr1 30604639 30604777 -212059576 + LTR67 LTR ERVL 418 556 -1 581 225 98 112 chr1 30604860 30605068 -212059285 - MLT1J LTR MaLR -141 370 168 2702 169 24 62 chr1 30605068 30605411 -212058942 + MER34B LTR ERV1 3 316 -249 2447 75 0 3 chr1 30605411 30605706 -212058647 + AluSq SINE Alu 1 294 -19 2702 169 24 62 chr1 30605706 30605947 -212058406 + MER34B LTR ERV1 316 565 0 581 225 98 112 chr1 30605947 30606094 -212058259 - MLT1J LTR MaLR -343 168 20 472 185 0 12 chr1 30606193 30606274 -212058079 + FRAM/FAM SINE Alu 8 87 -98 481 317 43 6 chr1 30606287 30606451 -212057902 - MIR SINE MIR -80 182 13 347 289 141 0 chr1 30606804 30606932 -212057421 - MIR SINE MIR -60 202 57 721 79 0 0 chr1 30606932 30607021 -212057332 - AluY SINE Alu -221 90 2 3973 92 16 14 chr1 30607021 30607598 -212056755 - LTR8 LTR ERV1 -113 578 1 2572 155 78 28 chr1 30607623 30607983 -212056370 - L1MB3 LINE L1 0 6183 5843 1830 158 7 20 chr1 30607983 30608280 -212056073 - AluSx SINE Alu -15 297 5 2001 147 3 3 chr1 30608285 30608585 -212055768 - AluJo SINE Alu -12 300 1 2572 155 78 28 chr1 30608585 30608755 -212055598 - L1MB3 LINE L1 -343 5840 5620 1112 173 6 0 chr1 30608755 30608934 -212055419 + FRAM SINE Alu 1 174 -2 2206 108 0 16 chr1 30608957 30609263 -212055090 - AluY SINE Alu -10 301 1 912 181 184 6 chr1 30609263 30609570 -212054783 - L1MB3 LINE L1 -637 5534 5173 2437 84 7 0 chr1 30609851 30610148 -212054205 + AluSc SINE Alu 1 299 -10 183 80 0 0 chr1 30610149 30610174 -212054179 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 921 120 0 0 chr1 30610226 30610351 -212054002 - FLAM_C SINE Alu -8 125 1 787 249 105 4 chr1 30610358 30610587 -212053766 - MIR SINE MIR -10 252 1 1494 180 67 11 chr1 30610671 30610780 -212053573 + AluJo SINE Alu 2 103 -209 2074 121 4 4 chr1 30610780 30611060 -212053293 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr1 30611060 30611087 -212053266 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1494 180 67 11 chr1 30611087 30611260 -212053093 + AluJo SINE Alu 102 301 -11 514 333 64 5 chr1 30611267 30611546 -212052807 + L1ME3A LINE L1 5412 5706 -456 1956 143 0 0 chr1 30611568 30611848 -212052505 + AluSx SINE Alu 1 280 -32 271 270 55 32 chr1 30611890 30612099 -212052254 + L1ME3A LINE L1 5728 5937 -233 2420 99 3 0 chr1 30612226 30612538 -212051815 + AluSp SINE Alu 1 313 0 241 265 0 60 chr1 30612609 30612692 -212051661 + MIR SINE MIR 66 143 -65 276 222 87 3 chr1 30612753 30612840 -212051513 + MIR SINE MIR 23 125 -83 23 0 0 0 chr1 30612866 30612889 -212051464 + AT_rich Low_complexity Low_complexity 1 23 0 621 99 50 30 chr1 30612889 30612990 -212051363 - U6 snRNA snRNA -4 103 1 22 0 0 0 chr1 30612995 30613017 -212051336 + AT_rich Low_complexity Low_complexity 1 22 0 2221 128 3 7 chr1 30613086 30613392 -212050961 - AluSx SINE Alu -7 305 1 478 313 8 0 chr1 30613404 30613532 -212050821 - L2 LINE L2 -244 3069 2941 485 288 44 13 chr1 30613971 30614180 -212050173 + MIR SINE MIR 2 209 -53 437 113 16 0 chr1 30614304 30614366 -212049987 - U7 snRNA snRNA 0 63 1 247 315 63 16 chr1 30614368 30614495 -212049858 + MIR SINE MIR 124 256 -6 534 151 0 0 chr1 30614507 30614613 -212049740 + (TGGA)n Simple_repeat Simple_repeat 2 107 0 314 206 176 76 chr1 30615064 30615195 -212049158 + MIR3 SINE MIR 62 205 -3 1406 108 10 5 chr1 30615701 30615929 -212048424 + AluY SINE Alu 98 311 0 850 226 0 33 chr1 30615931 30616112 -212048241 + FAM SINE Alu 1 175 0 898 91 0 33 chr1 30616317 30616438 -212047915 - FLAM_C SINE Alu -13 130 14 1795 154 3 46 chr1 30616558 30616734 -212047619 - AluJb SINE Alu -18 294 135 2100 115 3 44 chr1 30616734 30617055 -212047298 - AluSx SINE Alu 0 312 5 1795 154 3 46 chr1 30617055 30617183 -212047170 - AluJb SINE Alu -177 135 3 660 219 57 31 chr1 30617189 30617417 -212046936 - MER113 DNA MER1_type? -285 236 3 299 203 14 14 chr1 30617447 30617516 -212046837 - MLT1K LTR MaLR -8 580 512 255 261 198 0 chr1 30617946 30618057 -212046296 - MIR SINE MIR -84 178 46 1779 124 76 7 chr1 30618625 30618900 -212045453 - AluSx SINE Alu -6 306 13 1045 104 0 0 chr1 30618901 30619035 -212045318 - AluSq/x SINE Alu -178 134 1 2480 76 3 3 chr1 30619474 30619776 -212044577 - AluSc SINE Alu -3 306 5 432 163 149 85 chr1 30621285 30621332 -212043021 + MLT1A1 LTR MaLR 1 44 -321 2393 85 7 0 chr1 30621332 30621626 -212042727 - AluSp SINE Alu -17 296 1 432 163 149 85 chr1 30621626 30621719 -212042634 + MLT1A1 LTR MaLR 44 150 -215 656 137 0 10 chr1 30621728 30621830 -212042523 + AluJb SINE Alu 204 304 -8 515 200 69 15 chr1 30621892 30622022 -212042331 + MLT1A1 LTR MaLR 171 307 -58 2070 141 0 22 chr1 30622026 30622345 -212042008 - AluJo SINE Alu 0 312 1 234 203 145 14 chr1 30622347 30622416 -212041937 + HsTC2 DNA Tc2 1814 1891 -7 978 92 8 8 chr1 30622470 30622601 -212041752 + AluSq/x SINE Alu 3 133 -179 2069 142 0 16 chr1 30622604 30622920 -212041433 + AluSq SINE Alu 1 311 -2 349 244 83 65 chr1 30622974 30623142 -212041211 + L1ME4a LINE L1 5946 6116 -5 1288 133 5 35 chr1 30623167 30623370 -212040983 + AluJo SINE Alu 7 203 -109 1893 121 3 101 chr1 30623612 30623756 -212040597 + AluJb SINE Alu 1 93 -219 2239 118 0 0 chr1 30623756 30624053 -212040300 + AluSg SINE Alu 1 297 -13 1893 121 3 101 chr1 30624053 30624254 -212040099 + AluJb SINE Alu 93 312 0 605 287 35 15 chr1 30624276 30624478 -212039875 - MIR SINE MIR -9 253 48 531 299 110 58 chr1 30624493 30624678 -212039675 - L2 LINE L2 -3 3269 3095 2262 113 3 3 chr1 30624678 30624980 -212039373 + AluSx SINE Alu 1 302 -10 531 299 110 58 chr1 30624980 30625158 -212039195 - L2 LINE L2 -177 3095 2887 300 269 47 125 chr1 30625178 30625354 -212038999 + L2 LINE L2 2813 2964 -308 2384 89 3 0 chr1 30625354 30625656 -212038697 - AluSg SINE Alu -7 303 1 300 269 47 125 chr1 30625656 30625735 -212038618 + L2 LINE L2 2964 3048 -224 1729 180 0 10 chr1 30625743 30626037 -212038316 + AluJb SINE Alu 13 303 -9 2331 184 36 22 chr1 30626037 30626129 -212038224 + Charlie1 DNA MER1_type 2221 2310 -451 2245 90 17 13 chr1 30626129 30626428 -212037925 + AluSq SINE Alu 2 301 -12 2331 184 36 22 chr1 30626428 30626869 -212037484 + Charlie1 DNA MER1_type 2310 2761 0 698 182 241 16 chr1 30627193 30627283 -212037070 + MER96B DNA MER1_type? 1 69 -348 1915 127 3 84 chr1 30627283 30627615 -212036738 - AluSx SINE Alu -7 305 1 698 182 241 16 chr1 30627615 30627758 -212036595 + MER96B DNA MER1_type? 69 179 -238 2471 66 0 28 chr1 30627758 30628077 -212036276 - AluY SINE Alu 0 311 2 698 182 241 16 chr1 30628077 30628095 -212036258 + MER96B DNA MER1_type? 179 310 -107 798 355 55 28 chr1 30628429 30628566 -212035787 - L2 LINE L2 -352 2962 2830 2422 89 0 0 chr1 30628566 30628858 -212035495 + AluSg SINE Alu 1 292 -18 798 355 55 28 chr1 30628858 30629359 -212034994 - L2 LINE L2 -484 2830 2307 208 340 115 35 chr1 30629361 30629673 -212034680 - L2 LINE L2 -1171 2143 1807 2140 101 42 0 chr1 30629704 30629991 -212034362 + AluSq SINE Alu 1 299 -14 416 211 60 38 chr1 30630002 30630081 -212034272 + L1MC5 LINE L1 7529 7605 -356 1894 151 9 25 chr1 30630081 30630398 -212033955 + AluJo SINE Alu 1 312 0 416 211 60 38 chr1 30630398 30630503 -212033850 + L1MC5 LINE L1 7605 7717 -244 322 130 0 0 chr1 30630505 30630559 -212033794 + Alu SINE Alu 243 296 -4 696 150 53 9 chr1 30630570 30630683 -212033670 + FLAM_C SINE Alu 3 120 -23 296 143 20 0 chr1 30630755 30630804 -212033549 + LTR16A LTR ERVL 395 444 -6 237 323 54 46 chr1 30631172 30631302 -212033051 + L2 LINE L2 2934 3064 -208 946 273 101 59 chr1 30631431 30631656 -212032697 - L2 LINE L2 -1 3312 3098 840 159 0 43 chr1 30631656 30631794 -212032559 - FLAM_C SINE Alu 0 133 2 946 273 101 59 chr1 30631794 30631859 -212032494 - L2 LINE L2 -215 3098 3037 690 186 154 19 chr1 30631859 30632015 -212032338 + MER69A DNA AcHobo 1 177 0 946 273 101 59 chr1 30632015 30632419 -212031934 - L2 LINE L2 -276 3037 2570 723 224 67 12 chr1 30632584 30632692 -212031661 + MER5A DNA MER1_type 9 131 -58 2382 97 0 10 chr1 30632692 30633001 -212031352 + AluSx SINE Alu 1 306 -6 723 224 67 12 chr1 30633001 30633057 -212031296 + MER5A DNA MER1_type 131 182 -7 624 316 63 63 chr1 30633144 30633539 -212030814 + L2 LINE L2 2827 3221 -51 498 201 30 67 chr1 30633641 30633775 -212030578 + MIR SINE MIR 13 141 -121 383 293 18 42 chr1 30634691 30634858 -212029495 - MIR SINE MIR -64 198 36 202 250 300 12 chr1 30635093 30635173 -212029180 + MIR SINE MIR 44 146 -62 4132 175 24 64 chr1 30635192 30635268 -212029085 + L1MB2 LINE L1 4357 4435 -1748 2415 96 3 10 chr1 30635268 30635582 -212028771 + AluSx SINE Alu 1 312 0 4132 175 24 64 chr1 30635582 30635650 -212028703 + L1MB2 LINE L1 4435 4504 -1679 2532 61 0 0 chr1 30635650 30635944 -212028409 + AluY SINE Alu 1 294 -17 4132 175 24 64 chr1 30635944 30636538 -212027815 + L1MB2 LINE L1 4504 5121 -1062 2117 102 3 0 chr1 30636538 30636832 -212027521 + AluSx SINE Alu 1 295 -17 4132 175 24 64 chr1 30636832 30636843 -212027510 + L1MB2 LINE L1 5121 5131 -1052 1709 179 3 3 chr1 30636843 30637140 -212027213 + AluJo SINE Alu 1 297 -15 4132 175 24 64 chr1 30637140 30637782 -212026571 + L1MB2 LINE L1 5131 5798 -385 2147 96 23 0 chr1 30637782 30638083 -212026270 - AluSx SINE Alu 0 312 5 4132 175 24 64 chr1 30638083 30638099 -212026254 + L1MB2 LINE L1 5798 5813 -370 2389 47 0 38 chr1 30638099 30638417 -212025936 - AluY SINE Alu -4 307 2 4132 175 24 64 chr1 30638417 30638813 -212025540 + L1MB2 LINE L1 5813 6224 41 2030 133 3 0 chr1 30638813 30639115 -212025238 - AluSx SINE Alu -9 303 1 4132 175 24 64 chr1 30639115 30639150 -212025203 + L1MB2 LINE L1 6224 6064 -119 222 37 0 0 chr1 30639150 30639177 -212025176 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 4132 175 24 64 chr1 30639177 30639255 -212025098 + L1MB2 LINE L1 6063 6143 -40 718 135 0 10 chr1 30639281 30639385 -212024968 + FLAM_C SINE Alu 21 123 -20 735 230 28 115 chr1 30639629 30639865 -212024488 + MIR SINE MIR 1 209 -53 2219 106 0 0 chr1 30639865 30640166 -212024187 + AluSx SINE Alu 1 301 -11 735 230 28 115 chr1 30640166 30640216 -212024137 + MIR SINE MIR 209 262 0 295 367 143 5 chr1 30640223 30640419 -212023934 + L2 LINE L2 3045 3267 -5 210 156 0 0 chr1 30640525 30640557 -212023796 + MIR SINE MIR 117 148 -114 1410 184 39 32 chr1 30640579 30640862 -212023491 + AluJo SINE Alu 11 295 -17 2280 85 7 0 chr1 30640866 30641172 -212023181 + AluY SINE Alu 1 308 -3 2132 114 0 0 chr1 30641188 30641485 -212022868 + AluSx SINE Alu 1 297 -15 186 229 0 0 chr1 30641530 30641565 -212022788 + L2 LINE L2 3220 3254 -18 1944 141 0 0 chr1 30642179 30642463 -212021890 - AluSx SINE Alu -28 284 1 460 269 113 12 chr1 30642577 30642737 -212021616 + MIR SINE MIR 22 197 -65 187 103 0 0 chr1 30642772 30642801 -212021552 + L2 LINE L2 3244 3272 0 389 315 42 29 chr1 30642874 30643046 -212021307 + MIR3 SINE MIR 19 191 -38 1657 145 3 61 chr1 30643135 30643446 -212020907 + AluJo SINE Alu 1 293 -19 1301 172 3 134 chr1 30643471 30643814 -212020539 + AluSx SINE Alu 1 298 -14 493 248 23 8 chr1 30644674 30644807 -212019546 - MIR SINE MIR -58 150 16 296 337 23 0 chr1 30644824 30644910 -212019443 - L2 LINE L2 0 3313 3226 1989 71 48 4 chr1 30645067 30645359 -212018994 - AluSc SINE Alu 0 304 1 424 259 167 12 chr1 30645884 30646046 -212018307 - MIR SINE MIR -6 256 70 204 308 0 13 chr1 30646076 30646154 -212018199 + (CCA)n Simple_repeat Simple_repeat 2 78 0 1920 142 0 6 chr1 30646308 30646619 -212017734 + AluJb SINE Alu 1 309 -3 247 298 6 58 chr1 30647069 30647265 -212017088 + GA-rich Low_complexity Low_complexity 1 185 0 826 138 0 0 chr1 30647579 30647702 -212016651 - FLAM_C SINE Alu -20 123 1 443 237 136 0 chr1 30647754 30647872 -212016481 - L1MC5 LINE L1 -519 7442 7309 2150 122 0 0 chr1 30648397 30648709 -212015644 - AluSx SINE Alu 0 312 1 706 103 8 51 chr1 30649049 30649166 -212015187 + FLAM_C SINE Alu 30 141 -2 254 128 0 21 chr1 30649557 30649604 -212014749 - MIR SINE MIR -98 164 119 428 129 14 0 chr1 30649609 30649679 -212014674 + L2 LINE L2 2473 2543 -771 1666 109 0 81 chr1 30649682 30649967 -212014386 + AluSx SINE Alu 1 262 -50 555 221 7 40 chr1 30649975 30650124 -212014229 + L1MC5 LINE L1 7299 7442 -519 1432 109 0 199 chr1 30650176 30650533 -212013820 + AluSx SINE Alu 1 286 -16 730 192 51 128 chr1 30650575 30650809 -212013544 - LTR33 LTR ERVL -305 216 1 325 258 39 8 chr1 30650955 30651083 -212013270 + GA-rich Low_complexity Low_complexity 4 135 0 755 175 6 73 chr1 30651117 30651294 -212013059 - FRAM SINE Alu 0 166 2 396 159 0 0 chr1 30651297 30651360 -212012993 + MLT1D LTR MaLR 443 505 0 261 246 199 12 chr1 30651441 30651612 -212012741 + L1MC5 LINE L1 7268 7470 -491 2300 84 0 0 chr1 30651614 30651910 -212012443 + AluSx SINE Alu 1 296 -16 1265 219 140 4 chr1 30651916 30652401 -212011952 - L1MC4a LINE L1 -558 7250 6535 706 149 26 0 chr1 30652444 30652558 -212011795 - FLAM_C SINE Alu 0 143 27 2450 162 45 14 chr1 30653611 30653674 -212010679 - L1MB3 LINE L1 0 6183 6123 2302 102 0 0 chr1 30653674 30653978 -212010375 - AluSx SINE Alu -8 304 1 2450 162 45 14 chr1 30653978 30654402 -212009951 - L1MB3 LINE L1 -60 6123 5681 2274 90 0 3 chr1 30654812 30655124 -212009229 - AluY SINE Alu 0 311 1 1412 184 228 0 chr1 30655458 30655778 -212008575 + MSTD LTR MaLR 2 394 -2 266 283 30 72 chr1 30656026 30656192 -212008161 - L1MC4 LINE L1 -124 7918 7760 1856 131 40 3 chr1 30656205 30656503 -212007850 + AluSx SINE Alu 1 309 -3 2159 95 0 3 chr1 30656659 30656955 -212007398 - AluY SINE Alu -16 295 1 976 138 7 0 chr1 30657406 30657558 -212006795 - AluSx SINE Alu -159 153 1 968 193 0 35 chr1 30657558 30657760 -212006593 + AluJo SINE Alu 101 295 -17 2401 78 3 0 chr1 30657787 30658096 -212006257 + AluSp SINE Alu 1 310 -3 1043 118 7 0 chr1 30658691 30658843 -212005510 - AluSx SINE Alu -159 153 1 922 206 0 34 chr1 30658843 30659047 -212005306 + AluJo SINE Alu 101 297 -15 2371 73 3 0 chr1 30659074 30659377 -212004976 + AluSp SINE Alu 1 304 -9 1055 105 7 0 chr1 30659963 30660115 -212004238 - AluSx SINE Alu -159 153 1 951 197 0 35 chr1 30660115 30660318 -212004035 + AluJo SINE Alu 101 296 -16 2270 81 3 0 chr1 30660345 30660641 -212003712 + AluSp SINE Alu 1 297 -16 261 225 90 81 chr1 30660660 30660771 -212003582 + MER5A DNA MER1_type 78 189 0 22 0 0 0 chr1 30660929 30660951 -212003402 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr1 30661387 30661419 -212002934 + AT_rich Low_complexity Low_complexity 1 32 0 1900 154 3 3 chr1 30661618 30661930 -212002423 - AluSx SINE Alu 0 312 1 224 372 21 21 chr1 30662107 30662136 -212002217 - L3b LINE CR1 -328 1255 1227 1759 164 7 16 chr1 30662136 30662446 -212001907 - AluJb SINE Alu -5 307 1 224 372 21 21 chr1 30662446 30662510 -212001843 - L3b LINE CR1 -355 1228 1162 855 302 31 16 chr1 30662958 30663213 -212001140 + MIR SINE MIR 3 261 -1 640 247 41 21 chr1 30663218 30663412 -212000941 - MIR SINE MIR -32 230 33 22 0 0 0 chr1 30663567 30663589 -212000764 + AT_rich Low_complexity Low_complexity 1 22 0 1646 146 17 40 chr1 30663611 30663912 -212000441 + AluJb SINE Alu 12 305 -7 414 53 0 0 chr1 30663966 30664023 -212000330 + (TA)n Simple_repeat Simple_repeat 2 58 0 1844 142 0 0 chr1 30664023 30664305 -212000048 - AluSx SINE Alu -29 283 2 443 167 68 61 chr1 30664328 30664460 -211999893 - L1MC4 LINE L1 -137 7905 7773 182 262 16 33 chr1 30664524 30664585 -211999768 + MER5B DNA MER1_type 84 143 -35 1367 137 34 0 chr1 30664684 30664888 -211999465 - MER46A DNA MER2_type 0 236 26 1517 155 63 36 chr1 30664988 30665291 -211999062 - AluJb SINE Alu 0 312 2 24 0 0 0 chr1 30667225 30667249 -211997104 + AT_rich Low_complexity Low_complexity 1 24 0 2038 95 3 24 chr1 30667944 30668262 -211996091 - AluSp SINE Alu 0 312 1 1085 77 0 14 chr1 30668263 30668406 -211995947 - AluSq/x SINE Alu -172 141 1 251 118 79 13 chr1 30668425 30668501 -211995852 - L1ME4a LINE L1 0 6121 6041 689 174 0 16 chr1 30668945 30669066 -211995287 - FRAM SINE Alu -12 164 46 859 188 13 0 chr1 30669095 30669249 -211995104 + FRAM SINE Alu 9 164 -12 1609 183 0 28 chr1 30669309 30669599 -211994754 - AluJb SINE Alu -30 282 1 2108 116 0 0 chr1 30669601 30669895 -211994458 - AluSq SINE Alu -19 294 1 602 229 25 8 chr1 30669918 30670040 -211994313 - FLAM_C SINE Alu -18 125 2 2037 107 3 3 chr1 30670461 30670750 -211993603 - AluSc SINE Alu -12 297 9 1106 162 192 8 chr1 30670968 30671202 -211993151 - AluJb SINE Alu -35 277 1 215 358 73 9 chr1 30671353 30671462 -211992891 + MIR SINE MIR 36 151 -57 31 26 0 0 chr1 30671956 30671994 -211992359 + AT_rich Low_complexity Low_complexity 1 38 0 308 300 67 25 chr1 30672486 30672606 -211991747 + MIR SINE MIR 64 188 -74 2278 76 23 7 chr1 30672619 30672921 -211991432 + AluY SINE Alu 1 307 -4 2052 70 0 0 chr1 30672921 30673180 -211991173 + AluY SINE Alu 1 259 -52 237 219 6 3 chr1 30674033 30674082 -211990271 + MIR SINE MIR 107 157 -51 218 182 23 0 chr1 30674190 30674234 -211990119 + MIR SINE MIR 170 214 -48 1819 155 93 48 chr1 30674848 30675247 -211989106 - MSTA LTR MaLR -11 417 1 212 323 0 16 chr1 30675363 30675425 -211988928 - L2 LINE L2 -186 3086 3026 2327 70 7 0 chr1 30675893 30676191 -211988162 + AluY SINE Alu 1 300 -11 300 284 113 28 chr1 30676238 30676379 -211987974 - L2 LINE L2 -299 2973 2821 196 235 39 0 chr1 30676877 30676928 -211987425 + MIR SINE MIR 93 145 -63 1936 91 12 63 chr1 30676953 30677272 -211987081 + AluSx SINE Alu 1 303 -9 375 232 63 11 chr1 30677673 30677768 -211986585 + MIR SINE MIR 48 147 -61 717 131 31 17 chr1 30678078 30678304 -211986049 - AluJb SINE Alu -1 311 2 231 329 26 53 chr1 30678639 30678730 -211985623 + MER5A DNA MER1_type 18 110 -79 1656 181 10 0 chr1 30678730 30679028 -211985325 - AluJo SINE Alu -11 301 1 231 329 26 53 chr1 30679028 30679047 -211985306 + MER5A DNA MER1_type 110 128 -61 2254 101 0 0 chr1 30679047 30679353 -211985000 - AluSq SINE Alu -7 306 1 231 329 26 53 chr1 30679353 30679393 -211984960 + MER5A DNA MER1_type 128 165 -24 229 250 21 0 chr1 30679459 30679507 -211984846 - L2 LINE L2 -18 3254 3206 192 40 0 0 chr1 30681317 30681342 -211983011 + (CA)n Simple_repeat Simple_repeat 2 26 0 1795 109 4 0 chr1 30681615 30681872 -211982481 + AluSx SINE Alu 53 310 -2 577 286 56 71 chr1 30681872 30681931 -211982422 - MIR SINE MIR -9 253 195 2229 97 7 0 chr1 30681931 30682231 -211982122 - AluSp SINE Alu -11 302 1 577 286 56 71 chr1 30682231 30682426 -211981927 - MIR SINE MIR -67 195 1 27 29 0 0 chr1 30682555 30682589 -211981764 + AT_rich Low_complexity Low_complexity 1 34 0 2165 117 3 0 chr1 30682647 30682955 -211981398 - AluSp SINE Alu -4 309 1 2029 101 0 46 chr1 30682957 30683283 -211981070 - AluY SINE Alu 0 311 1 1767 149 0 42 chr1 30683283 30683591 -211980762 - AluSx SINE Alu -15 297 2 276 336 75 0 chr1 30684124 30684231 -211980122 + MIR SINE MIR 31 145 -63 2423 88 0 0 chr1 30684365 30684659 -211979694 + AluSg SINE Alu 3 296 -14 357 208 42 0 chr1 30684782 30684854 -211979499 + MIR SINE MIR 78 152 -56 209 217 65 0 chr1 30685486 30685532 -211978821 + MIR SINE MIR 120 168 -94 306 288 0 0 chr1 30685549 30685622 -211978731 + MIR SINE MIR 46 118 -90 2160 118 14 0 chr1 30685622 30685918 -211978435 - AluY SINE Alu -11 300 1 1178 214 68 4 chr1 30685927 30686179 -211978174 - AluJb SINE Alu -9 303 36 609 192 0 0 chr1 30686179 30686283 -211978070 - FLAM_A SINE Alu -16 126 23 1779 98 0 5 chr1 30686358 30686582 -211977771 - AluSg SINE Alu -87 223 1 203 318 58 58 chr1 30688842 30688996 -211975357 - MIR3 SINE MIR -52 156 3 265 204 15 15 chr1 30689146 30689215 -211975138 + MIR SINE MIR 61 124 -84 364 264 72 26 chr1 30689420 30689562 -211974791 + MIR SINE MIR 2 149 -62 2133 124 0 3 chr1 30689601 30689891 -211974462 - AluSx SINE Alu -23 289 1 268 282 149 29 chr1 30689913 30690087 -211974266 - MIR SINE MIR -42 220 26 * 555 272 82 44 chr1 30690027 30690233 -211974120 + MIR SINE MIR 22 235 -27 192 306 153 14 chr1 30690249 30690321 -211974032 - MIR SINE MIR -153 109 28 1006 183 277 0 chr1 30690331 30690566 -211973787 - AluSx SINE Alu -2 300 1 1274 70 0 120 chr1 30690631 30690831 -211973522 + AluY SINE Alu 1 176 -135 507 267 75 19 chr1 30690833 30690994 -211973359 - MIR SINE MIR -71 191 22 260 226 108 39 chr1 30691006 30691108 -211973245 + MIR SINE MIR 112 220 -42 948 60 90 8 chr1 30691137 30691270 -211973083 + AluY SINE Alu 157 300 -11 314 142 0 3 chr1 30691282 30691508 -211972845 + AluSq SINE Alu 1 295 -7 1220 131 5 11 chr1 30691685 30691876 -211972477 - AluSg/x SINE Alu -1 311 122 2172 112 0 33 chr1 30691928 30692233 -211972120 + AluSq SINE Alu 1 295 -18 189 327 19 0 chr1 30692345 30692397 -211971956 - MER5A DNA MER1_type -91 98 46 344 320 0 0 chr1 30692442 30692520 -211971833 - L2 LINE L2 -61 3211 3134 2345 110 3 3 chr1 30692539 30692849 -211971504 - AluSx SINE Alu 0 312 3 839 250 109 25 chr1 30693187 30693471 -211970882 + LTR16A LTR ERVL 120 427 -23 289 261 0 0 chr1 30693485 30693554 -211970799 - MIR SINE MIR -57 151 83 222 135 37 6 chr1 30693672 30693725 -211970628 + MIR SINE MIR 63 118 -90 2593 74 0 10 chr1 30693961 30694273 -211970080 - AluSg SINE Alu 0 310 2 426 320 129 52 chr1 30694283 30694426 -211969927 - L2 LINE L2 -1 3271 3140 2084 126 27 3 chr1 30694426 30694720 -211969633 - AluSx SINE Alu -11 301 1 426 320 129 52 chr1 30694720 30695068 -211969285 - L2 LINE L2 -132 3140 2735 1729 135 71 24 chr1 30695180 30695477 -211968876 - AluJo SINE Alu -1 311 1 2004 122 31 3 chr1 30695537 30695825 -211968528 - AluSq SINE Alu -16 297 2 2254 90 7 0 chr1 30695826 30696114 -211968239 - AluSp SINE Alu -6 307 18 2292 98 0 20 chr1 30696117 30696423 -211967930 - AluSg SINE Alu -10 300 1 2312 109 0 0 chr1 30696423 30696726 -211967627 - AluSx SINE Alu -9 303 1 520 262 6 49 chr1 30696829 30696993 -211967360 + L2 LINE L2 3154 3310 -3 197 299 26 134 chr1 30697163 30697338 -211967015 + MIR SINE MIR 20 174 -88 2144 132 0 3 chr1 30697338 30697634 -211966719 + AluSx SINE Alu 2 296 -16 197 299 26 134 chr1 30697634 30697652 -211966701 + MIR SINE MIR 174 192 -70 183 152 61 0 chr1 30697776 30697809 -211966544 + MIR SINE MIR 118 152 -56 301 173 107 40 chr1 30698000 30698075 -211966278 + L2 LINE L2 3182 3261 -11 1779 141 18 18 chr1 30698138 30698422 -211965931 + AluJb SINE Alu 1 284 -28 371 82 0 16 chr1 30698429 30698474 -211965879 + (TA)n Simple_repeat Simple_repeat 2 47 -14 2533 61 0 0 chr1 30698474 30698768 -211965585 - AluY SINE Alu -17 294 1 371 82 0 16 chr1 30698768 30698783 -211965570 + (TA)n Simple_repeat Simple_repeat 47 61 0 212 281 181 44 chr1 30698785 30698945 -211965408 - MIR SINE MIR -14 248 67 272 225 77 115 chr1 30699013 30699173 -211965180 + MIR SINE MIR 45 203 -59 34 0 0 0 chr1 30699178 30699212 -211965141 + AT_rich Low_complexity Low_complexity 1 34 0 2041 128 21 0 chr1 30699277 30699566 -211964787 - AluSx SINE Alu -17 295 1 248 221 103 0 chr1 30699610 30699678 -211964675 - L2 LINE L2 -186 3086 3012 344 251 145 92 chr1 30699846 30699875 -211964478 - L1ME1 LINE L1 -14 6152 6126 2191 97 7 7 chr1 30699875 30700173 -211964180 - AluSx SINE Alu -14 298 1 344 251 145 92 chr1 30700173 30700350 -211964003 - L1ME1 LINE L1 -40 6126 5935 1453 198 6 61 chr1 30700627 30700756 -211963597 + AluSp SINE Alu 4 138 -175 2028 84 23 4 chr1 30700756 30701017 -211963336 + AluSp SINE Alu 34 299 -14 2532 28 0 7 chr1 30701025 30701311 -211963042 + AluYb8 SINE Alu 35 318 0 1453 198 6 61 chr1 30701311 30701485 -211962868 + AluSp SINE Alu 145 299 -14 1010 197 0 5 chr1 30701580 30701768 -211962585 - AluJb SINE Alu -8 304 118 917 186 16 0 chr1 30701768 30701956 -211962397 - L1ME1 LINE L1 -278 5888 5698 839 159 7 40 chr1 30701965 30702116 -211962237 - AluJo SINE Alu -166 146 1 349 129 2 0 chr1 30702118 30702174 -211962179 - L1ME1 LINE L1 -643 5525 5470 683 244 111 49 chr1 30702190 30702350 -211962003 + MIR SINE MIR 12 191 -71 1061 193 63 5 chr1 30702350 30702557 -211961796 + MER20 DNA MER1_type 1 219 0 683 244 111 49 chr1 30702557 30702621 -211961732 + MIR SINE MIR 191 250 -12 180 210 86 37 chr1 30703024 30703105 -211961248 - L2 LINE L2 -340 2973 2889 290 258 82 0 chr1 30703246 30703343 -211961010 + MIR SINE MIR 11 115 -147 438 264 16 32 chr1 30703387 30703512 -211960841 - MIR SINE MIR -75 187 65 196 352 45 34 chr1 30703515 30703603 -211960750 - L2 LINE L2 -47 3225 3137 2264 92 0 0 chr1 30703666 30703989 -211960364 + AluSc SINE Alu 1 323 0 180 315 108 36 chr1 30704042 30704153 -211960200 - L2 LINE L2 -214 3058 2940 2287 125 0 0 chr1 30704285 30704590 -211959763 + AluSq SINE Alu 2 306 -7 512 236 29 7 chr1 30704592 30704732 -211959621 + MLT1K LTR MaLR 446 588 0 1737 100 0 0 chr1 30704887 30705107 -211959246 + AluJb SINE Alu 1 220 -92 1003 198 42 28 chr1 30705107 30705319 -211959034 + AluJb SINE Alu 86 300 -12 1474 134 79 8 chr1 30705420 30705674 -211958679 - AluJb SINE Alu 0 312 41 211 211 0 0 chr1 30705730 30705782 -211958571 + A-rich Low_complexity Low_complexity 1 52 0 692 182 0 0 chr1 30705806 30705916 -211958437 + FLAM_A SINE Alu 10 119 -23 30 0 0 0 chr1 30705916 30705946 -211958407 + AT_rich Low_complexity Low_complexity 1 30 0 381 250 143 7 chr1 30706087 30706227 -211958126 + MLT1L LTR MaLR 140 298 -317 2073 123 0 10 chr1 30706228 30706528 -211957825 + AluSg SINE Alu 2 298 -12 1857 128 43 26 chr1 30706532 30706868 -211957485 + AluSx SINE Alu 1 341 0 2160 97 0 4 chr1 30706874 30707152 -211957201 + AluSx SINE Alu 21 297 -15 1326 141 8 4 chr1 30707156 30707397 -211956956 + L1MB8 LINE L1 5726 5967 -211 1296 133 63 133 chr1 30707402 30707719 -211956634 - AluJo SINE Alu -7 305 11 648 198 0 60 chr1 30707719 30707886 -211956467 + L1MB8 LINE L1 5959 6115 -63 289 173 0 0 chr1 30707894 30707946 -211956407 - L1MA10 LINE L1 -29 6305 6254 312 121 30 0 chr1 30707948 30708014 -211956339 + L1MB7 LINE L1 6117 6184 0 389 305 17 0 chr1 30708157 30708275 -211956078 + MLT1L LTR MaLR 432 551 -64 926 195 0 0 chr1 30708359 30708508 -211955845 - FRAM SINE Alu -32 144 1 676 165 66 26 chr1 30708508 30708523 -211955830 - L1MB5 LINE L1 -30 6150 6137 1593 179 47 0 chr1 30708523 30708802 -211955551 + AluJo SINE Alu 1 292 -20 676 165 66 26 chr1 30708802 30708926 -211955427 - L1MB5 LINE L1 -43 6137 6019 2256 126 3 0 chr1 30708926 30709236 -211955117 - AluSx SINE Alu -1 311 1 676 165 66 26 chr1 30709236 30709572 -211954781 - L1MB5 LINE L1 -161 6019 5565 1833 115 66 17 chr1 30709572 30709859 -211954494 - AluSx SINE Alu -11 301 1 676 165 66 26 chr1 30709859 30710008 -211954345 - L1MB5 LINE L1 -615 5565 5423 310 222 165 125 chr1 30710124 30710300 -211954053 - MIR SINE MIR 0 262 80 372 132 0 0 chr1 30710325 30710393 -211953960 - L1MD2 LINE L1 0 6359 6292 1820 153 11 7 chr1 30710393 30710680 -211953673 + AluJo SINE Alu 1 288 -24 276 100 0 0 chr1 30710680 30710720 -211953633 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 3007 152 19 29 chr1 30710720 30711067 -211953286 - L1MD1 LINE L1 -63 6179 5839 2044 153 0 6 chr1 30711067 30711380 -211952973 - AluJb SINE Alu -1 311 1 3007 152 19 29 chr1 30711380 30711617 -211952736 - L1MD1 LINE L1 -403 5839 5601 1584 98 18 0 chr1 30711619 30711843 -211952510 - AluSq SINE Alu -5 308 81 1688 58 0 0 chr1 30711944 30712134 -211952219 + AluY SINE Alu 107 296 -15 2247 112 10 0 chr1 30712217 30712512 -211951841 + AluSx SINE Alu 5 302 -10 1093 186 6 0 chr1 30712930 30713113 -211951240 + AluJb SINE Alu 1 184 -128 966 125 69 0 chr1 30713113 30713257 -211951096 + AluSq SINE Alu 93 246 -67 249 33 0 0 chr1 30713261 30713291 -211951062 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 2013 113 62 0 chr1 30713348 30713639 -211950714 - AluSp SINE Alu -4 309 1 2790 89 12 147 chr1 30713639 30714010 -211950343 - Tigger1 DNA MER2_type -324 2094 1675 2222 115 6 10 chr1 30714010 30714345 -211950008 + AluSq SINE Alu 1 313 0 2790 89 12 147 chr1 30714345 30714424 -211949929 - Tigger1 DNA MER2_type -743 1675 1738 1627 134 0 0 chr1 30714424 30714655 -211949698 - AluSg/x SINE Alu -1 311 81 2790 89 12 147 chr1 30714655 30714790 -211949563 - Tigger1 DNA MER2_type -679 1739 1587 2316 104 3 0 chr1 30714791 30715089 -211949264 - AluSx SINE Alu -13 299 1 4442 115 8 39 chr1 30715089 30715256 -211949097 - Tigger1 DNA MER2_type -1207 1211 1040 2249 105 3 7 chr1 30715256 30715560 -211948793 - AluSc SINE Alu -6 303 1 4442 115 8 39 chr1 30715560 30716029 -211948324 - Tigger1 DNA MER2_type -1378 1040 558 2922 10 0 0 chr1 30716029 30716339 -211948014 + AluYb8 SINE Alu 1 310 -8 2379 78 14 3 chr1 30716347 30716643 -211947710 + AluSg SINE Alu 1 299 -11 4442 115 8 39 chr1 30716643 30716772 -211947581 - Tigger1 DNA MER2_type -1867 551 460 1600 142 3 115 chr1 30716774 30716908 -211947445 + AluJo SINE Alu 2 149 -153 2170 93 0 59 chr1 30716908 30717230 -211947123 + AluSg SINE Alu 1 303 -7 1600 142 3 115 chr1 30717230 30717342 -211947011 + AluJo SINE Alu 149 202 -100 207 0 0 0 chr1 30717342 30717365 -211946988 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1600 142 3 115 chr1 30717365 30717456 -211946897 + AluJo SINE Alu 202 302 0 275 208 0 0 chr1 30717456 30717509 -211946844 - Tigger1 DNA MER2_type -2363 55 3 2189 84 10 32 chr1 30717509 30717818 -211946535 + AluSc SINE Alu 1 302 -7 183 361 0 0 chr1 30717869 30717941 -211946412 - L3b LINE CR1 -294 1289 1218 1384 170 116 33 chr1 30717984 30718260 -211946093 - AluJo SINE Alu -13 299 1 2318 107 7 0 chr1 30718265 30718563 -211945790 - AluSx SINE Alu -12 300 1 1991 132 0 74 chr1 30718563 30718888 -211945465 - AluJb SINE Alu -11 301 1 534 268 32 6 chr1 30718982 30719139 -211945214 - MIR SINE MIR -58 204 44 369 225 0 12 chr1 30719449 30719529 -211944824 - L2 LINE L2 -1 3271 3193 210 344 154 41 chr1 30720249 30720404 -211943949 + MIR3 SINE MIR 19 169 -39 354 312 45 32 chr1 30720776 30720930 -211943423 - MIR3 SINE MIR -7 201 46 293 276 76 9 chr1 30721172 30721277 -211943076 + MIR SINE MIR 19 130 -78 819 119 66 40 chr1 30721286 30721437 -211942916 - FRAM SINE Alu -1 175 21 315 250 95 17 chr1 30721450 30721566 -211942787 + MIR SINE MIR 134 258 -4 1270 77 0 49 chr1 30722073 30722089 -211942264 + AluSq SINE Alu 108 123 -190 1245 46 17 6 chr1 30722089 30722262 -211942091 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1270 77 0 49 chr1 30722262 30722428 -211941925 + AluSq SINE Alu 123 281 -32 213 39 0 0 chr1 30722428 30722454 -211941899 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 293 313 67 20 chr1 30722640 30722835 -211941518 + L1MC4a LINE L1 5692 5895 -1913 353 186 199 62 chr1 30723128 30723419 -211940934 - L1ME4a LINE L1 -185 5936 5606 744 151 50 0 chr1 30723433 30723552 -211940801 - FLAM_A SINE Alu -4 129 5 2461 60 3 17 chr1 30723569 30723891 -211940462 + AluSp SINE Alu 1 313 0 367 40 0 0 chr1 30723915 30723965 -211940388 - AluY SINE Alu -6 296 247 2358 88 0 3 chr1 30724065 30724359 -211939994 + AluSx SINE Alu 12 304 -8 264 30 0 0 chr1 30724509 30724542 -211939811 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 687 209 22 9 chr1 30724937 30725090 -211939263 + MIR SINE MIR 6 151 -62 1106 178 5 20 chr1 30725090 30725287 -211939066 + AluJo SINE Alu 87 280 -32 299 25 25 0 chr1 30725287 30725327 -211939026 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 211 280 13 27 chr1 30725327 30725402 -211938951 + MIR SINE MIR 143 216 -46 2335 99 3 6 chr1 30725413 30725727 -211938626 + AluSp SINE Alu 1 313 0 1496 131 26 137 chr1 30725729 30726044 -211938309 + AluYb8 SINE Alu 1 275 -43 2045 99 19 26 chr1 30726044 30726357 -211937996 - AluY SINE Alu 0 311 1 1496 131 26 137 chr1 30726357 30726392 -211937961 + AluYb8 SINE Alu 275 312 -6 2217 100 3 17 chr1 30726398 30726699 -211937654 + AluSp SINE Alu 1 297 -16 1129 150 68 14 chr1 30726836 30727128 -211937225 - L1MB8 LINE L1 0 6178 5777 2182 109 0 3 chr1 30727162 30727469 -211936884 + AluY SINE Alu 1 306 0 318 179 0 0 chr1 30727477 30727533 -211936820 + AluJ/FRAM SINE Alu 232 287 -15 1814 173 7 17 chr1 30727546 30727847 -211936506 + AluSq SINE Alu 3 300 -13 1957 199 82 27 chr1 30727881 30728359 -211935994 - MLT1D LTR MaLR 0 505 2 2406 72 0 0 chr1 30728383 30728696 -211935657 + AluSc SINE Alu 1 313 0 2137 140 3 9 chr1 30729026 30729161 -211935192 + AluSq SINE Alu 1 135 -178 2404 97 0 0 chr1 30729161 30729460 -211934893 + AluSx SINE Alu 1 299 -13 2137 140 3 9 chr1 30729460 30729639 -211934714 + AluSq SINE Alu 135 313 0 2382 69 3 7 chr1 30730041 30730332 -211934021 + AluSp SINE Alu 1 290 -23 754 176 26 39 chr1 30730332 30730485 -211933868 - FRAM SINE Alu -30 146 1 2616 65 0 0 chr1 30730635 30730943 -211933410 - AluY SINE Alu -3 308 1 1181 38 0 0 chr1 30730947 30731078 -211933275 - AluYb8 SINE Alu -187 131 1 2445 86 6 10 chr1 30731165 30731479 -211932874 - AluSq SINE Alu 0 313 1 1841 169 23 13 chr1 30731604 30731911 -211932442 + AluJb SINE Alu 1 310 -2 395 307 0 60 chr1 30731917 30732067 -211932286 - MIR SINE MIR -120 142 2 199 275 14 58 chr1 30732165 30732234 -211932119 - L3 LINE CR1 -1414 163 98 182 138 35 0 chr1 30732575 30732604 -211931749 + MIR SINE MIR 117 146 -116 638 294 33 5 chr1 30732628 30732812 -211931541 - MIR SINE MIR -52 210 22 253 259 37 148 chr1 30732824 30733013 -211931340 + MIR3 SINE MIR 40 207 -1 2123 52 45 4 chr1 30733137 30733406 -211930947 - AluY SINE Alu -6 305 26 193 226 57 19 chr1 30733441 30733494 -211930859 + MIR SINE MIR 105 159 -103 1933 117 10 3 chr1 30734004 30734294 -211930059 - AluSx SINE Alu -20 292 1 2104 71 0 52 chr1 30734317 30734512 -211929841 - AluSx SINE Alu 0 312 108 198 71 0 0 chr1 30734512 30734540 -211929813 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2001 115 0 3 chr1 30734540 30734826 -211929527 - AluSq SINE Alu -28 285 1 2104 71 0 52 chr1 30734826 30734968 -211929385 - AluSx SINE Alu -202 110 2 1710 174 0 14 chr1 30734971 30735264 -211929089 - AluJb SINE Alu -19 293 5 1480 137 4 8 chr1 30735333 30735567 -211928786 - AluJo SINE Alu -13 299 67 1884 116 0 4 chr1 30735567 30735835 -211928518 + AluSx SINE Alu 1 267 -45 207 0 0 0 chr1 30735840 30735863 -211928490 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 237 175 222 0 chr1 30735866 30735929 -211928424 - AluJo SINE Alu -225 77 1 1318 157 40 95 chr1 30736341 30736531 -211927822 + AluJb SINE Alu 1 167 -145 2241 98 0 16 chr1 30736531 30736848 -211927505 - AluSx SINE Alu 0 312 1 1318 157 40 95 chr1 30736848 30736982 -211927371 + AluJb SINE Alu 167 307 -5 1063 207 6 78 chr1 30737069 30737115 -211927238 - L1ME2 LINE L1 -9 6155 6107 2192 116 0 0 chr1 30737115 30737425 -211926928 + AluSq SINE Alu 1 310 -3 1063 207 6 78 chr1 30737425 30737697 -211926656 - L1ME2 LINE L1 -57 6107 5860 935 164 0 0 chr1 30737701 30737853 -211926500 - FRAM SINE Alu -25 151 1 530 172 66 0 chr1 30737854 30737976 -211926377 - L1ME2 LINE L1 -306 5858 5729 2255 92 3 0 chr1 30737976 30738279 -211926074 - AluSg SINE Alu 0 310 7 2242 77 10 0 chr1 30738283 30738580 -211925773 - AluSp SINE Alu -13 300 1 974 150 50 0 chr1 30738666 30738826 -211925527 + AluJb SINE Alu 137 304 -8 800 126 0 0 chr1 30738825 30738944 -211925409 + AluSg/x SINE Alu 185 303 -9 * 319 302 8 95 chr1 30739165 30739291 -211925062 + L2 LINE L2 3172 3286 -27 1774 163 10 0 chr1 30739372 30739672 -211924681 - AluJo SINE Alu -7 305 3 285 279 21 107 chr1 30739915 30739996 -211924357 + MIR SINE MIR 121 187 -75 2134 110 3 3 chr1 30739996 30740296 -211924057 + AluSx SINE Alu 1 300 -12 285 279 21 107 chr1 30740296 30740354 -211923999 + MIR SINE MIR 187 248 -14 189 0 0 0 chr1 30741032 30741053 -211923300 + (TA)n Simple_repeat Simple_repeat 2 22 0 2084 125 0 0 chr1 30741191 30741494 -211922859 - AluSx SINE Alu -9 303 1 638 285 27 5 chr1 30741511 30741697 -211922656 - L3 LINE CR1 -108 1469 1280 265 188 21 0 chr1 30741705 30741753 -211922600 + MLT1A1 LTR MaLR 1 49 -325 1221 219 72 7 chr1 30741821 30742113 -211922240 + MLT1A1 LTR MaLR 44 354 -11 403 215 237 7 chr1 30742144 30742279 -211922074 + MIR SINE MIR 31 196 -66 258 191 83 60 chr1 30742349 30742433 -211921920 - L3 LINE CR1 -313 1264 1179 514 135 98 55 chr1 30742596 30742649 -211921704 - Charlie5 DNA MER1_type 0 2624 2575 1417 166 40 22 chr1 30742649 30742956 -211921397 + AluSx SINE Alu 1 312 0 514 135 98 55 chr1 30742956 30742980 -211921373 - Charlie5 DNA MER1_type -49 2575 2553 1998 128 0 7 chr1 30742980 30743307 -211921046 + AluSx SINE Alu 1 312 0 514 135 98 55 chr1 30743307 30743389 -211920964 - Charlie5 DNA MER1_type -71 2553 2455 805 148 0 0 chr1 30743406 30743534 -211920819 + FLAM_C SINE Alu 12 139 -4 1999 102 4 0 chr1 30743540 30743814 -211920539 + AluSx SINE Alu 1 275 -37 377 276 0 41 chr1 30743815 30743913 -211920440 + L1MC4 LINE L1 6610 6703 -1339 321 344 0 0 chr1 30743850 30743943 -211920410 - L1MC4 LINE L1 -1336 6706 6614 * 1130 68 7 0 chr1 30744095 30744242 -211920111 + AluSg/x SINE Alu 154 301 -11 2311 61 24 0 chr1 30744242 30744535 -211919818 + AluY SINE Alu 1 300 -11 820 144 0 16 chr1 30744567 30744727 -211919626 + FLAM_C SINE Alu 2 159 0 717 260 42 10 chr1 30744728 30744920 -211919433 - MIR SINE MIR -16 246 49 441 263 171 44 chr1 30745261 30745512 -211918841 + L2 LINE L2 2127 2409 -905 946 127 0 69 chr1 30745617 30745773 -211918580 - AluSg/x SINE Alu -32 280 136 2261 82 7 0 chr1 30745773 30746076 -211918277 - AluY SINE Alu -6 305 1 946 127 0 69 chr1 30746076 30746092 -211918261 - AluSg/x SINE Alu -176 136 120 1885 146 0 3 chr1 30746151 30746453 -211917900 - AluJb SINE Alu -11 301 1 2239 85 0 0 chr1 30746592 30746886 -211917467 - AluSx SINE Alu -18 294 1 2424 42 3 7 chr1 30747459 30747766 -211916587 - AluSp SINE Alu -7 306 1 686 121 163 28 chr1 30747795 30747936 -211916417 + FRAM SINE Alu 1 158 -18 350 246 91 64 chr1 30747959 30748069 -211916284 + MIR SINE MIR 35 147 -61 2167 91 0 16 chr1 30748166 30748475 -211915878 + AluSq SINE Alu 1 304 -9 259 209 9 124 chr1 30748482 30748587 -211915766 - MIR SINE MIR -62 146 54 204 228 167 79 chr1 30748580 30748694 -211915659 + L2 LINE L2 3190 3313 0 * 452 182 11 155 chr1 30749053 30749089 -211915264 - L1MB2 LINE L1 -1 6167 6127 2360 60 0 7 chr1 30749089 30749387 -211914966 + AluY SINE Alu 1 296 -15 452 182 11 155 chr1 30749387 30749508 -211914845 - L1MB2 LINE L1 -41 6127 6082 1683 172 0 23 chr1 30749508 30749810 -211914543 - AluSx SINE Alu -17 295 1 452 182 11 155 chr1 30749810 30749928 -211914425 - L1MB2 LINE L1 -86 6082 5949 2041 126 3 0 chr1 30749928 30750221 -211914132 - AluSx SINE Alu -18 294 1 1441 195 14 3 chr1 30750322 30750604 -211913749 + AluJo SINE Alu 14 298 -14 2581 265 120 29 chr1 30750604 30751686 -211912667 - L2 LINE L2 -184 3129 1937 2261 73 0 3 chr1 30751757 30752044 -211912309 + AluSc SINE Alu 1 286 -23 274 237 86 0 chr1 30752049 30752142 -211912211 + MER113 DNA MER1_type? 139 239 -282 625 143 171 0 chr1 30752143 30752248 -211912105 + FLAM_C SINE Alu 2 124 -19 393 205 36 0 chr1 30752249 30752332 -211912021 + MER113 DNA MER1_type? 207 292 -229 2250 110 0 0 chr1 30753208 30753518 -211910835 - AluSg SINE Alu 0 310 1 2090 111 3 0 chr1 30753719 30754016 -211910337 + AluSq SINE Alu 1 298 -15 22 80 0 0 chr1 30754392 30754442 -211909911 + AT_rich Low_complexity Low_complexity 1 50 0 1243 100 9 74 chr1 30754540 30754708 -211909645 - AluSq SINE Alu -15 298 147 2053 44 93 0 chr1 30754708 30754978 -211909375 - AluY SINE Alu -16 295 1 1243 100 9 74 chr1 30754978 30755038 -211909315 - AluSq SINE Alu -166 147 85 2244 79 7 0 chr1 30755213 30755518 -211908835 + AluY SINE Alu 1 307 -4 588 85 181 0 chr1 30755518 30755612 -211908741 - AluSp SINE Alu -201 112 2 337 290 48 3 chr1 30755638 30755784 -211908569 - MIR SINE MIR -14 248 53 793 110 0 0 chr1 30755912 30756021 -211908332 - AluSx SINE Alu -10 299 191 1082 99 0 0 chr1 30756022 30756163 -211908190 - AluSx SINE Alu -171 141 1 23 0 0 0 chr1 30756275 30756298 -211908055 + AT_rich Low_complexity Low_complexity 1 23 0 1116 129 0 0 chr1 30756300 30756463 -211907890 - AluSg/x SINE Alu -20 292 130 2182 103 3 0 chr1 30756465 30756765 -211907588 - AluSq SINE Alu -12 301 1 557 230 35 137 chr1 30756770 30756879 -211907474 - MIR SINE MIR -50 212 136 1728 163 0 7 chr1 30756879 30757167 -211907186 - AluJb SINE Alu -15 297 12 557 230 35 137 chr1 30757167 30757283 -211907070 - MIR SINE MIR -126 136 10 1479 169 36 26 chr1 30757338 30757646 -211906707 + AluJo SINE Alu 2 312 0 2098 119 16 0 chr1 30757649 30757952 -211906401 + AluSx SINE Alu 1 308 -4 1884 133 3 20 chr1 30758038 30758339 -211906014 + AluSx SINE Alu 1 296 -16 2235 99 10 0 chr1 30758339 30758641 -211905712 + AluSp SINE Alu 1 305 -8 637 280 96 49 chr1 30758645 30759154 -211905199 - L1ME LINE L1 -544 5626 5059 1938 137 0 3 chr1 30759154 30759447 -211904906 - AluSx SINE Alu -19 293 2 637 280 96 49 chr1 30759447 30759782 -211904571 - L1ME LINE L1 -1111 5059 4741 1464 215 0 13 chr1 30759896 30760194 -211904159 + AluJb SINE Alu 3 296 -16 225 248 51 34 chr1 30760215 30760332 -211904021 - L1ME LINE L1 -1479 4667 4549 466 256 167 21 chr1 30760336 30760475 -211903878 + L2 LINE L2 2960 3077 -236 2116 130 0 0 chr1 30760475 30760783 -211903570 - AluSx SINE Alu -4 308 1 2323 63 27 0 chr1 30760789 30761090 -211903263 - AluY SINE Alu -2 309 1 466 256 167 21 chr1 30761090 30761121 -211903232 + L2 LINE L2 3081 3106 -207 2223 107 3 0 chr1 30761121 30761429 -211902924 - AluSp SINE Alu -4 309 1 466 256 167 21 chr1 30761429 30761484 -211902869 + L2 LINE L2 3106 3227 -86 718 254 116 13 chr1 30761487 30761711 -211902642 + MIR SINE MIR 3 249 -13 185 333 58 0 chr1 30761784 30761853 -211902500 + L2 LINE L2 3241 3313 0 2308 93 0 6 chr1 30762022 30762333 -211902020 - AluSx SINE Alu -3 309 1 1487 138 27 74 chr1 30762338 30762664 -211901689 - AluSx SINE Alu 0 312 1 2294 75 0 0 chr1 30762884 30763178 -211901175 + AluY SINE Alu 1 294 -17 274 263 20 20 chr1 30763290 30763389 -211900964 + L1ME4a LINE L1 5644 5742 -379 951 172 0 0 chr1 30763393 30763556 -211900797 - AluJb SINE Alu -8 304 142 363 260 102 39 chr1 30763561 30763688 -211900665 + L1ME4a LINE L1 5732 5866 -255 751 261 21 5 chr1 30763692 30763880 -211900473 + MIR SINE MIR 72 262 0 1668 176 0 3 chr1 30763983 30764273 -211900080 + AluSx SINE Alu 12 300 -12 1826 71 0 4 chr1 30764490 30764729 -211899624 - AluSx SINE Alu -11 301 64 241 293 26 52 chr1 30764875 30764991 -211899362 - MARNA DNA Mariner -12 574 462 665 171 9 0 chr1 30765121 30765226 -211899127 - FLAM_C SINE Alu -36 107 2 2033 99 3 13 chr1 30765238 30765540 -211898813 - AluSq SINE Alu -14 299 1 2371 76 0 3 chr1 30765585 30765889 -211898464 + AluSg1 SINE Alu 1 303 -6 335 194 0 0 chr1 30765892 30765954 -211898399 + L1ME LINE L1 5757 5818 -303 488 193 21 135 chr1 30765966 30766027 -211898326 + LTR38 LTR ERV1 3 69 -487 2160 113 0 0 chr1 30766027 30766329 -211898024 - AluSq SINE Alu -11 302 1 488 193 21 135 chr1 30766329 30766459 -211897894 + LTR38 LTR ERV1 69 172 -384 822 97 35 0 chr1 30766462 30766576 -211897777 + AluSg SINE Alu 3 120 -190 1289 84 0 17 chr1 30766701 30766879 -211897474 + AluSg/x SINE Alu 132 306 -6 983 241 50 44 chr1 30766883 30767202 -211897151 + LTR38 LTR ERV1 162 482 -74 666 108 0 2 chr1 30767203 30767435 -211896918 + AluSx SINE Alu 1 283 -29 23 33 0 0 chr1 30767438 30767468 -211896885 + AT_rich Low_complexity Low_complexity 1 30 0 745 161 48 0 chr1 30767474 30767598 -211896755 + AluJo/FLAM SINE Alu 1 130 -172 1858 148 16 7 chr1 30767598 30767901 -211896452 + AluJo SINE Alu 1 306 -6 648 123 8 41 chr1 30768002 30768124 -211896229 + AluJb SINE Alu 17 134 -178 2388 63 10 3 chr1 30768184 30768487 -211895866 - AluSp SINE Alu -8 305 1 491 149 0 0 chr1 30768525 30768599 -211895754 - AluJ SINE Alu -28 284 211 1627 97 0 29 chr1 30768599 30768837 -211895516 + AluSp SINE Alu 64 294 -19 1131 182 5 5 chr1 30768899 30769108 -211895245 - AluJ SINE Alu -103 209 1 2027 99 0 24 chr1 30769174 30769467 -211894886 - AluSp SINE Alu -19 294 9 319 291 68 0 chr1 30769480 30769583 -211894770 - L1MC5 LINE L1 -365 7596 7487 2013 92 32 3 chr1 30769713 30769996 -211894357 - AluSg SINE Alu -19 291 1 2056 119 0 0 chr1 30769996 30770291 -211894062 - AluY SINE Alu -16 295 1 1667 226 58 66 chr1 30770294 30770520 -211893833 - HAL1 LINE L1 -695 1812 1586 2435 43 20 0 chr1 30770520 30770825 -211893528 - AluY SINE Alu 0 311 1 1667 226 58 66 chr1 30770825 30771146 -211893207 - HAL1 LINE L1 -921 1586 1269 2016 88 28 3 chr1 30771149 30771434 -211892919 - AluSq SINE Alu -21 292 1 30 0 0 0 chr1 30771434 30771464 -211892889 + AT_rich Low_complexity Low_complexity 1 30 0 2220 90 3 3 chr1 30771766 30772066 -211892287 + AluSx SINE Alu 1 300 -12 313 248 54 94 chr1 30772085 30772234 -211892119 + MIR SINE MIR 119 261 -1 1772 126 7 40 chr1 30772241 30772543 -211891810 - AluSx SINE Alu -20 292 1 180 309 0 0 chr1 30772567 30772609 -211891744 + MIR SINE MIR 203 244 -18 301 211 0 0 chr1 30772767 30772819 -211891534 + L2 LINE L2 3213 3264 -8 465 275 119 38 chr1 30773040 30773200 -211891153 + MIR SINE MIR 12 184 -78 183 250 23 0 chr1 30773200 30773244 -211891109 + L2 LINE L2 2931 2975 -339 270 0 0 0 chr1 30773273 30773303 -211891050 + (TG)n Simple_repeat Simple_repeat 1 30 0 201 39 0 0 chr1 30773302 30773328 -211891025 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1072 138 0 0 chr1 30773328 30773487 -211890866 - AluSg/x SINE Alu -34 276 118 2154 109 0 6 chr1 30773506 30773818 -211890535 - AluSx SINE Alu -2 310 1 390 319 79 55 chr1 30773825 30773959 -211890394 + L2 LINE L2 2980 3109 -163 2065 117 0 13 chr1 30773959 30774275 -211890078 - AluSx SINE Alu 0 312 1 390 319 79 55 chr1 30774275 30774394 -211889959 + L2 LINE L2 3109 3239 -33 385 333 77 13 chr1 30774946 30775180 -211889173 + L2 LINE L2 2836 3084 -188 2225 89 0 10 chr1 30775232 30775561 -211888792 - AluSx SINE Alu 0 312 1 396 356 6 11 chr1 30775725 30775905 -211888448 + T-rich Low_complexity Low_complexity 1 179 0 * 415 305 10 53 chr1 30775790 30776213 -211888140 + CT-rich Low_complexity Low_complexity 1 405 0 1931 109 6 32 chr1 30776469 30776780 -211887573 + AluSx SINE Alu 1 303 -9 2233 58 0 64 chr1 30776792 30776917 -211887436 + AluY SINE Alu 5 136 -230 2412 54 0 10 chr1 30776917 30777231 -211887122 + AluY SINE Alu 1 311 0 2233 58 0 64 chr1 30777231 30777488 -211886865 + AluY SINE Alu 136 366 0 1913 116 0 17 chr1 30777501 30777794 -211886559 - AluJb SINE Alu -24 288 1 2146 71 4 0 chr1 30777796 30778077 -211886276 - AluSp SINE Alu -30 283 2 246 289 252 0 chr1 30778077 30778212 -211886141 - Charlie8 DNA MER1_type -2248 169 1 336 267 308 7 chr1 30778275 30778421 -211885932 - MIR SINE MIR -12 250 61 841 240 19 96 chr1 30778560 30778721 -211885632 - MIR SINE MIR 0 262 129 1931 95 78 3 chr1 30778721 30779004 -211885349 + AluSq SINE Alu 2 305 -8 841 240 19 96 chr1 30779004 30779113 -211885240 - MIR SINE MIR -133 129 13 1320 161 10 77 chr1 30779514 30779776 -211884577 - AluJo SINE Alu -3 309 68 2222 82 3 0 chr1 30779776 30780070 -211884283 + AluY SINE Alu 1 295 -16 1320 161 10 77 chr1 30780070 30780105 -211884248 - AluJo SINE Alu -244 68 32 2231 95 0 7 chr1 30780199 30780503 -211883850 + AluSq SINE Alu 1 302 -11 1782 147 3 7 chr1 30780637 30780923 -211883430 + AluJb SINE Alu 1 285 -27 413 140 0 0 chr1 30780961 30781018 -211883335 + AluS SINE Alu 2 58 -260 231 188 0 59 chr1 30981018 30981119 -211683234 + C-rich Low_complexity Low_complexity 4 98 0 1624 104 0 30 chr1 30981570 30981801 -211682552 + AluSg/x SINE Alu 88 311 -1 1449 175 62 0 chr1 30981802 30982093 -211682260 + MER41C LTR ERV1 246 554 0 21 0 0 0 chr1 30982190 30982211 -211682142 + GC_rich Low_complexity Low_complexity 1 21 0 226 260 47 64 chr1 30982243 30982478 -211681875 - L2 LINE L2 -227 3045 2815 327 301 122 13 chr1 30982533 30982689 -211681664 - MIR SINE MIR -4 258 86 215 279 23 101 chr1 30982798 30982927 -211681426 - L2 LINE L2 -94 3219 3101 661 247 40 6 chr1 30983558 30983732 -211680621 + MIR SINE MIR 59 238 -24 241 295 70 0 chr1 30985202 30985331 -211679022 + L2 LINE L2 2836 2973 -299 210 335 53 41 chr1 30985719 30985889 -211678464 - MIR3 SINE MIR -7 201 30 339 323 22 62 chr1 30986030 30986256 -211678097 - MIR SINE MIR -40 222 6 283 309 85 48 chr1 30986530 30986718 -211677635 + MIR SINE MIR 1 195 -67 * 311 250 0 12 chr1 30986715 30986795 -211677558 - MIR SINE MIR -126 136 58 340 246 25 57 chr1 30986804 30986865 -211677488 + MIR SINE MIR 43 100 -162 2320 90 3 3 chr1 30986865 30987155 -211677198 - AluSg SINE Alu -20 290 1 340 246 25 57 chr1 30987155 30987215 -211677138 + MIR SINE MIR 100 160 -102 687 12 0 0 chr1 30987902 30987982 -211676371 + (AATAG)n Simple_repeat Simple_repeat 1 80 0 387 282 54 100 chr1 30988124 30988383 -211675970 - L2 LINE L2 -19 3253 3007 723 259 211 6 chr1 30988384 30988701 -211675652 + L2 LINE L2 2932 3313 0 252 228 0 0 chr1 30988718 30988775 -211675578 - FAM SINE Alu 0 179 123 386 271 31 0 chr1 30990505 30990634 -211673719 - Zaphod DNA AcHobo -10 4021 3889 723 261 44 26 chr1 30992417 30992643 -211671710 - MIR SINE MIR -27 235 6 362 244 47 58 chr1 30992646 30992818 -211671535 - L3 LINE CR1 -77 1500 1331 522 275 47 6 chr1 30993476 30993647 -211670706 - MIR SINE MIR -78 184 7 182 65 97 0 chr1 30993658 30993689 -211670664 - MIR3 SINE MIR -15 193 160 212 296 19 0 chr1 30993752 30993806 -211670547 + MER5B DNA MER1_type 1 55 -123 418 141 0 14 chr1 30993811 30993882 -211670471 - L1MD3 LINE L1 -1737 6258 6189 418 266 56 7 chr1 30993883 30994026 -211670327 + MIR SINE MIR 35 184 -78 350 221 18 145 chr1 30994035 30994200 -211670153 + MER5B DNA MER1_type 1 133 -45 6951 163 67 46 chr1 30994215 30995741 -211668612 + L1MC3 LINE L1 5486 7049 -736 478 0 32 0 chr1 30995741 30995803 -211668550 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 6951 163 67 46 chr1 30995803 30995856 -211668497 + L1MC3 LINE L1 7049 7099 -686 4010 205 47 15 chr1 30995852 30996828 -211667525 - L1MEc LINE L1 -2824 4117 3111 * 827 193 28 41 chr1 30996827 30996900 -211667453 - L1MEc LINE L1 -5594 1528 1456 * 1502 224 100 3 chr1 30996900 30997261 -211667092 - MSTD LTR MaLR 0 396 1 827 193 28 41 chr1 30997261 30997405 -211666948 - L1MEc LINE L1 -5666 1456 1314 870 310 57 6 chr1 30997420 30997752 -211666601 - L1MEc LINE L1 -6013 1109 761 199 182 327 0 chr1 30997784 30997839 -211666514 - MIR SINE MIR -55 153 81 325 280 102 0 chr1 30998719 30998837 -211665516 - L2 LINE L2 -5 3267 3138 1095 254 126 20 chr1 30999649 31000055 -211664298 - L1MEc LINE L1 -5956 467 19 332 191 0 59 chr1 31000159 31000227 -211664126 - L2 LINE L2 -1 3312 3249 330 253 30 20 chr1 31000269 31000368 -211663985 - MIR SINE MIR -73 135 36 812 311 63 31 chr1 31000529 31001017 -211663336 + L1ME4a LINE L1 5475 5978 -143 318 274 250 24 chr1 31001061 31001229 -211663124 - MIR SINE MIR -18 244 39 330 26 0 0 chr1 31002433 31002472 -211661881 + (TG)n Simple_repeat Simple_repeat 2 40 0 426 261 50 56 chr1 31002476 31002656 -211661697 - MIR SINE MIR -55 207 29 1234 345 48 20 chr1 31003194 31004138 -211660215 - ERVL LTR ERVL -628 5136 4167 854 229 91 5 chr1 31004324 31004534 -211659819 - MIR SINE MIR -18 244 17 463 284 82 58 chr1 31004771 31005014 -211659339 - L2 LINE L2 -17 3255 3007 243 296 88 40 chr1 31004996 31005121 -211659232 + L3 LINE CR1 1444 1574 -3 * 278 259 86 0 chr1 31005865 31005946 -211658407 + MIR SINE MIR 45 132 -76 621 286 108 0 chr1 31006068 31006271 -211658082 - MIR SINE MIR -35 227 3 2296 108 0 19 chr1 31006349 31006664 -211657689 - AluSx SINE Alu -3 309 1 393 269 8 31 chr1 31006719 31006849 -211657504 + L2 LINE L2 2919 3045 -227 2016 106 3 21 chr1 31007666 31007949 -211656404 + AluSp SINE Alu 1 278 -35 183 333 121 0 chr1 31008779 31008878 -211655475 + MIR SINE MIR 117 227 -35 233 143 20 61 chr1 31009066 31009115 -211655238 - MIR SINE MIR -55 153 107 506 284 71 36 chr1 31009115 31009340 -211655013 + MIR SINE MIR 4 236 -26 233 100 50 17 chr1 31009367 31009427 -211654926 + (TAA)n Simple_repeat Simple_repeat 3 64 0 2424 100 0 3 chr1 31009915 31010225 -211654128 + AluSg SINE Alu 1 309 -1 2345 102 0 3 chr1 31011299 31011604 -211652749 - AluSq SINE Alu -9 304 1 742 256 31 15 chr1 31011649 31011844 -211652509 + MIR3 SINE MIR 11 208 0 1542 129 209 12 chr1 31012834 31013160 -211651193 + MSTA LTR MaLR 1 390 -38 191 333 51 8 chr1 31013164 31013281 -211651072 - L2 LINE L2 -39 3233 3112 427 250 134 43 chr1 31013359 31013523 -211650830 - MIR SINE MIR -21 241 63 549 318 153 7 chr1 31013815 31014089 -211650264 + MLT1K LTR MaLR 86 399 -189 231 328 0 0 chr1 31014103 31014164 -211650189 + (TG)n Simple_repeat Simple_repeat 1 61 0 276 263 95 11 chr1 31014281 31014376 -211649977 + MLT1K LTR MaLR 447 549 -39 533 210 48 8 chr1 31014838 31014962 -211649391 - MIR SINE MIR -120 142 14 211 242 33 44 chr1 31015003 31015094 -211649259 - L2 LINE L2 -190 3082 2993 396 214 270 0 chr1 31016838 31016964 -211647389 + MER5A DNA MER1_type 9 168 -21 231 258 32 16 chr1 31017027 31017089 -211647264 + MIR SINE MIR 86 148 -114 * 364 290 40 32 chr1 31017088 31017212 -211647141 - L2 LINE L2 0 3272 3148 385 193 18 0 chr1 31017408 31017489 -211646864 - MIR SINE MIR -60 148 65 349 281 37 22 chr1 31017668 31017803 -211646550 + MIR SINE MIR 58 194 -68 287 336 122 17 chr1 31017835 31018180 -211646173 + L2 LINE L2 2928 3308 -5 494 233 139 67 chr1 31018202 31018587 -211645766 - MLT1J2 LTR MaLR 0 450 75 335 188 0 16 chr1 31019097 31019161 -211645192 - MIR SINE MIR -114 148 86 340 313 35 35 chr1 31019714 31019858 -211644495 + MIR SINE MIR 24 167 -95 1600 224 12 50 chr1 31019961 31020461 -211643892 - L1ME1 LINE L1 -3 6232 5752 * 6114 249 72 12 chr1 31020460 31023369 -211640984 - L1ME1 LINE L1 -3141 3074 27 399 321 28 0 chr1 31024112 31024221 -211640132 - MIR SINE MIR -115 147 36 4835 159 58 10 chr1 31024369 31025283 -211639070 + L1MB3 LINE L1 24 981 -5403 828 210 78 72 chr1 31025287 31025339 -211639014 - MSTC LTR MaLR 0 428 378 426 20 0 0 chr1 31025339 31025390 -211638963 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2110 137 3 0 chr1 31025390 31025682 -211638671 - AluSx SINE Alu -19 293 1 828 210 78 72 chr1 31025682 31026015 -211638338 - MSTC LTR MaLR -49 379 3 3159 155 58 5 chr1 31026016 31026648 -211637705 + L1MB3 LINE L1 982 1647 -4737 9554 203 45 17 chr1 31026655 31029486 -211634867 + L1MB3 LINE L1 2801 5747 -672 342 0 0 0 chr1 31029486 31029524 -211634829 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 9554 203 45 17 chr1 31029524 31030215 -211634138 + L1MB3 LINE L1 5747 6417 -2 473 239 0 8 chr1 31030491 31030608 -211633745 - MLT1H LTR MaLR -395 154 39 6645 27 0 0 chr1 31030645 31031449 -211632904 - L1PA2 LINE L1 0 6155 5352 347 243 81 104 chr1 31031494 31031667 -211632686 + L2 LINE L2 2926 3094 -178 213 265 0 0 chr1 31031828 31031877 -211632476 + GA-rich Low_complexity Low_complexity 2 50 0 909 208 44 35 chr1 31032500 31032726 -211631627 - MIR SINE MIR -23 239 12 848 289 115 32 chr1 31032747 31033125 -211631228 - L2 LINE L2 -3 3310 2884 2674 99 39 51 chr1 31033125 31033166 -211631187 - MSTA LTR MaLR 0 428 388 2187 101 18 3 chr1 31033166 31033475 -211630878 + AluSx SINE Alu 1 313 0 2674 99 39 51 chr1 31033475 31033864 -211630489 - MSTA LTR MaLR -40 388 1 848 289 115 32 chr1 31033864 31033953 -211630400 - L2 LINE L2 -429 2884 2804 984 247 119 31 chr1 31033967 31034444 -211629909 + LTR33 LTR ERVL 1 519 -2 511 298 53 14 chr1 31034465 31034673 -211629680 - L2 LINE L2 -534 2780 2565 462 221 87 16 chr1 31035290 31035388 -211628965 + MIR SINE MIR 92 202 -60 2598 137 21 19 chr1 31035388 31035813 -211628540 + MSTB LTR MaLR 1 426 0 462 221 87 16 chr1 31035813 31035841 -211628512 + MIR SINE MIR 202 227 -35 548 282 67 50 chr1 31036835 31037193 -211627160 - L2 LINE L2 -2 3311 2948 246 286 0 0 chr1 31037428 31037484 -211626869 + MIR3 SINE MIR 142 197 -11 316 322 8 0 chr1 31038486 31038604 -211625749 - MLT1K LTR MaLR -328 260 142 282 303 61 0 chr1 31039033 31039132 -211625221 + L2 LINE L2 3205 3309 -4 192 196 22 0 chr1 31039277 31039323 -211625030 + MIR SINE MIR 98 144 -118 225 0 0 0 chr1 31039559 31039584 -211624769 + (A)n Simple_repeat Simple_repeat 1 25 0 1141 284 47 21 chr1 31039999 31040425 -211623928 + L2 LINE L2 2830 3266 -47 213 265 131 37 chr1 31040715 31040836 -211623517 - MIR SINE MIR -65 143 10 21 0 0 0 chr1 31040901 31040922 -211623431 + AT_rich Low_complexity Low_complexity 1 21 0 323 239 0 0 chr1 31040976 31041043 -211623310 - MIR SINE MIR -84 178 112 2221 98 0 41 chr1 31041182 31041499 -211622854 + AluSx SINE Alu 1 304 -8 186 250 0 21 chr1 31042277 31042325 -211622028 - MIR SINE MIR 0 262 216 * 222 176 0 0 chr1 31042297 31042331 -211622022 - L2 LINE L2 -25 3288 3255 266 202 12 60 chr1 31042348 31042432 -211621921 - MER116 DNA Mariner 0 80 1 234 184 0 0 chr1 31042484 31042522 -211621831 - MIR SINE MIR -62 146 109 2076 122 42 50 chr1 31043155 31043533 -211620820 + THE1C LTR MaLR 1 375 0 848 166 36 57 chr1 31043678 31043871 -211620482 + MER53 DNA DNA 1 189 0 241 156 22 0 chr1 31044088 31044133 -211620220 - MER58A DNA MER1_type -1 223 178 52 58 0 0 chr1 31044138 31044225 -211620128 + AT_rich Low_complexity Low_complexity 1 87 0 864 222 11 5 chr1 31044225 31044410 -211619943 - MER58A DNA MER1_type -37 187 2 189 348 11 34 chr1 31044538 31044627 -211619726 + MIR3 SINE MIR 68 154 -54 548 261 55 6 chr1 31045646 31045811 -211618542 + MIR SINE MIR 70 242 -20 185 370 167 10 chr1 31045839 31046031 -211618322 - MIR SINE MIR -15 247 26 283 171 26 0 chr1 31046051 31046127 -211618226 + CT-rich Low_complexity Low_complexity 1 78 0 296 276 9 21 chr1 31046358 31046464 -211617889 + MIR SINE MIR 10 113 -95 616 288 83 38 chr1 31046656 31047028 -211617325 + MLT1I LTR MaLR 21 409 0 357 119 24 24 chr1 31047146 31047230 -211617123 + GA-rich Low_complexity Low_complexity 1 84 0 434 304 73 50 chr1 31047269 31047489 -211616864 + MIR SINE MIR 9 233 -29 232 338 0 12 chr1 31048066 31048146 -211616207 + MIR SINE MIR 37 115 -147 304 203 0 17 chr1 31048711 31048770 -211615583 - L2 LINE L2 -63 3250 3193 331 267 190 17 chr1 31048773 31048889 -211615464 + L2 LINE L2 3177 3312 -1 198 217 0 83 chr1 31049633 31049693 -211614660 - MIR SINE MIR -63 199 145 727 282 75 18 chr1 31050038 31050265 -211614088 + MIR SINE MIR 20 259 -3 370 224 13 0 chr1 31050274 31050342 -211614011 + MLT1E2 LTR MaLR 3 71 -434 870 97 0 0 chr1 31050342 31050466 -211613887 + MSTB1 LTR MaLR 1 124 -302 2370 85 3 0 chr1 31050476 31050770 -211613583 + AluSg SINE Alu 1 295 -15 1150 131 113 9 chr1 31050773 31050995 -211613358 + MSTB1 LTR MaLR 188 432 0 1512 251 91 43 chr1 31050995 31051533 -211612820 + MLT1E2 LTR MaLR 63 626 0 227 260 14 0 chr1 31052764 31052837 -211611516 + L2 LINE L2 2313 2386 -928 396 250 37 9 chr1 31053450 31053558 -211610795 + MIR SINE MIR 25 136 -72 296 292 62 0 chr1 31053894 31053990 -211610363 - MIR SINE MIR -47 215 114 327 209 0 55 chr1 31053999 31054090 -211610263 - MIR3 SINE MIR -28 180 95 435 331 21 0 chr1 31054440 31054582 -211609771 - L2 LINE L2 -480 2834 2690 317 198 93 23 chr1 31054801 31054887 -211609466 - L2 LINE L2 -21 3292 3201 400 307 53 26 chr1 31054943 31055132 -211609221 + MIR SINE MIR 23 216 -46 587 236 70 20 chr1 31056389 31056588 -211607765 - Charlie8 DNA MER1_type -2202 215 7 399 177 0 0 chr1 31056679 31056775 -211607578 + CT-rich Low_complexity Low_complexity 1 96 0 399 313 122 17 chr1 31057051 31057281 -211607072 - MIR SINE MIR -6 256 3 356 254 97 22 chr1 31057309 31057443 -211606910 - L2 LINE L2 -262 3010 2867 355 252 19 9 chr1 31057499 31057606 -211606747 - MLT1K LTR MaLR 0 588 481 422 148 0 23 chr1 31057645 31057733 -211606620 + (GGA)n Simple_repeat Simple_repeat 3 88 0 787 281 108 0 chr1 31057754 31057985 -211606368 - MIR SINE MIR -3 259 4 186 381 48 0 chr1 31058045 31058129 -211606224 - L2 LINE L2 -536 2778 2691 487 218 165 38 chr1 31059132 31059265 -211605088 - L2 LINE L2 -1 3271 3122 211 324 181 30 chr1 31059421 31060047 -211604306 + L2 LINE L2 2371 3107 -165 624 235 102 45 chr1 31060112 31060376 -211603977 - MLT1J2 LTR MaLR -118 332 54 1629 203 79 40 chr1 31060446 31060793 -211603560 - MLT1C LTR MaLR -4 463 94 2352 99 0 3 chr1 31060793 31061095 -211603258 - AluSc SINE Alu -7 302 2 1629 203 79 40 chr1 31061095 31061191 -211603162 - MLT1C LTR MaLR -373 94 3 250 222 133 0 chr1 31061866 31061956 -211602397 + MIR SINE MIR 30 131 -77 830 270 52 0 chr1 31062263 31062474 -211601879 - MIR SINE MIR -29 233 12 598 292 81 22 chr1 31062508 31062746 -211601607 - MIR SINE MIR 0 262 15 223 147 0 0 chr1 31062792 31062826 -211601527 - MIR SINE MIR -10 252 219 308 335 112 19 chr1 31062843 31063049 -211601304 - MIR SINE MIR -8 254 30 202 337 114 29 chr1 31063335 31063581 -211600772 - L3 LINE CR1 -54 1523 1257 448 310 35 18 chr1 31063614 31063785 -211600568 - MIR SINE MIR -6 256 83 288 314 21 7 chr1 31063906 31064046 -211600307 + MLT1L LTR MaLR 474 615 0 254 340 0 0 chr1 31064257 31064357 -211599996 - MIR SINE MIR -123 139 40 600 226 19 26 chr1 31064398 31064553 -211599800 + LTR41 LTR ERVL 1 154 -619 466 170 85 65 chr1 31064898 31065051 -211599302 + LTR41 LTR ERVL 608 763 -10 578 308 213 6 chr1 31066518 31066865 -211597488 + L2 LINE L2 2837 3255 -17 288 0 0 0 chr1 31066865 31066897 -211597456 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 231 121 0 0 chr1 31068086 31068119 -211596234 + MIR SINE MIR 117 149 -113 683 114 0 0 chr1 31068190 31068295 -211596058 - AluSg/x SINE Alu -4 308 204 2692 48 0 0 chr1 31068360 31068669 -211595684 + AluY SINE Alu 1 309 -2 638 200 88 33 chr1 31068671 31068911 -211595442 + L1ME1 LINE L1 5280 5532 -630 838 170 60 23 chr1 31069048 31069266 -211595087 - L1PA13 LINE L1 -3 6160 5935 * 2134 215 28 48 chr1 31069250 31069853 -211594500 + L1ME1 LINE L1 5517 6130 -54 2579 57 0 0 chr1 31069853 31070150 -211594203 + AluY SINE Alu 1 297 -14 2134 215 28 48 chr1 31070150 31070175 -211594178 + L1ME1 LINE L1 6130 6154 -30 1727 129 7 7 chr1 31070175 31070470 -211593883 - L1MA4 LINE L1 -8 6292 5998 2134 215 28 48 chr1 31070470 31070541 -211593812 + L1ME1 LINE L1 6154 6184 0 618 308 26 79 chr1 31070860 31071165 -211593188 + L2 LINE L2 2978 3266 -6 6518 204 63 27 chr1 31071373 31074010 -211590343 + L1MC3 LINE L1 3247 5401 -745 1043 335 53 26 chr1 31074013 31074595 -211589758 + L2 LINE L2 2298 2895 -419 2301 94 13 10 chr1 31075267 31075575 -211588778 - AluSq SINE Alu -4 309 1 2117 173 46 35 chr1 31075722 31075875 -211588478 - MER65C LTR ERV1 0 461 311 1863 135 43 0 chr1 31075875 31076156 -211588197 + AluJb SINE Alu 2 294 -18 2277 102 7 3 chr1 31076158 31076461 -211587892 + AluSq SINE Alu 1 304 -9 2117 173 46 35 chr1 31076461 31076760 -211587593 - MER65C LTR ERV1 -150 311 1 1601 272 15 30 chr1 31077401 31077453 -211586900 - MER4-int LTR ERV1 -816 4055 4004 2265 108 3 0 chr1 31077453 31077741 -211586612 + AluSg SINE Alu 1 289 -21 1601 272 15 30 chr1 31077741 31077931 -211586422 - MER4-int LTR ERV1 -867 4004 3813 2248 106 0 16 chr1 31077931 31078234 -211586119 + AluSx SINE Alu 1 298 -14 1601 272 15 30 chr1 31078234 31078449 -211585904 - MER4-int LTR ERV1 -1058 3813 3604 259 146 0 73 chr1 31078536 31078591 -211585762 - MER4-int LTR ERV1 -1069 5262 5212 2780 183 90 74 chr1 31078621 31079936 -211584417 - MER4-int LTR ERV1 -1228 5103 2469 956 151 13 128 chr1 31080015 31080320 -211584033 - MER4-int LTR ERV1 -2868 3730 3461 844 188 55 105 chr1 31080411 31080463 -211583890 - MER4-int LTR ERV1 -4310 2448 2395 2229 120 13 0 chr1 31080463 31080763 -211583590 + AluSq SINE Alu 1 304 -9 844 188 55 105 chr1 31080763 31081279 -211583074 - MER4-int LTR ERV1 -4363 2395 1909 670 226 84 42 chr1 31081315 31081370 -211582983 - MER4-int LTR ERV1 -5835 1981 1636 1216 184 40 25 chr1 31081370 31081647 -211582706 - LTR57-int LTR ERVL -3757 1586 1306 282 265 29 0 chr1 31081647 31081715 -211582638 + L1M1 LINE L1 14 83 -7482 1369 159 54 46 chr1 31081715 31082066 -211582287 - MER4-int LTR ERV1 -2942 1929 1576 938 248 124 10 chr1 31082071 31082378 -211581975 - MER34 LTR ERV1 -162 380 39 2184 174 15 34 chr1 31083120 31083170 -211581183 - MER65C LTR ERV1 0 461 412 1992 145 6 25 chr1 31083170 31083488 -211580865 - AluSx SINE Alu 0 312 1 2184 174 15 34 chr1 31083488 31083907 -211580446 - MER65C LTR ERV1 -49 412 1 198 0 0 0 chr1 31084064 31084086 -211580267 + (TG)n Simple_repeat Simple_repeat 2 23 0 225 213 28 19 chr1 31084129 31084237 -211580116 + GA-rich Low_complexity Low_complexity 2 110 0 1699 289 79 7 chr1 31084237 31084919 -211579434 - L2 LINE L2 -1014 2300 1570 692 333 45 16 chr1 31085033 31085415 -211578938 - L1MC4a LINE L1 -1894 5914 5522 256 294 111 33 chr1 31085819 31085972 -211578381 + MLT1J LTR MaLR 5 169 -342 254 159 32 16 chr1 31086009 31086072 -211578281 + MLT1L LTR MaLR 205 268 -347 278 267 42 42 chr1 31086192 31086312 -211578041 + MLT1J LTR MaLR 343 462 -49 230 300 58 33 chr1 31086388 31086508 -211577845 + MIR SINE MIR 17 139 -69 274 315 133 6 chr1 31086795 31086960 -211577393 + MIR3 SINE MIR 8 193 -15 338 306 24 8 chr1 31087347 31087471 -211576882 + MIR3 SINE MIR 82 207 -1 706 300 136 29 chr1 31087685 31088141 -211576212 + MLT1K LTR MaLR 78 582 -6 447 277 90 32 chr1 31088552 31088707 -211575646 - MIR3 SINE MIR -29 179 16 340 342 52 0 chr1 31089445 31089600 -211574753 - MIR SINE MIR -18 244 82 430 303 76 20 chr1 31091046 31091244 -211573109 - MLT1K LTR MaLR -6 582 374 1337 205 51 31 chr1 31091807 31092175 -211572178 + L1MD2 LINE L1 5953 7967 -28 1018 235 73 8 chr1 31092227 31092487 -211571866 - L1MDb LINE L1 -6088 321 45 270 197 15 0 chr1 31092492 31092558 -211571795 + L1MD1 LINE L1 6174 6240 -2 378 107 0 0 chr1 31093087 31093143 -211571210 + (TG)n Simple_repeat Simple_repeat 2 57 0 303 277 133 18 chr1 31093167 31093333 -211571020 - MIR SINE MIR -76 186 2 433 237 29 40 chr1 31093374 31093558 -211570795 - MIR SINE MIR -70 138 8 417 214 12 0 chr1 31094654 31094738 -211569615 + MIR SINE MIR 65 149 -113 183 139 0 0 chr1 31094796 31094832 -211569521 + (TA)n Simple_repeat Simple_repeat 1 36 0 356 287 118 0 chr1 31094880 31095016 -211569337 + L2 LINE L2 3118 3269 -3 495 282 92 11 chr1 31097488 31097662 -211566691 - MIR SINE MIR -66 196 9 369 242 104 36 chr1 31097668 31097882 -211566471 - L3 LINE CR1 -108 1469 1177 208 91 45 0 chr1 31098025 31098069 -211566284 + T-rich Low_complexity Low_complexity 2 47 0 397 250 9 0 chr1 31098219 31098331 -211566022 - L1MA10 LINE L1 -1 6333 6221 3463 72 4 0 chr1 31098336 31098811 -211565542 + L1PA7 LINE L1 5675 6151 -3 2221 211 104 25 chr1 31098812 31099824 -211564529 - L1ME LINE L1 -584 5582 4497 379 254 52 102 chr1 31099995 31100416 -211563937 + L2 LINE L2 2826 3225 -47 182 235 12 129 chr1 31100628 31100713 -211563640 - L3 LINE CR1 -135 1442 1368 304 245 11 32 chr1 31100872 31100966 -211563387 + MIR SINE MIR 60 151 -57 185 195 24 0 chr1 31101542 31101583 -211562770 - MIR SINE MIR -110 152 111 220 336 104 15 chr1 31102469 31102603 -211561750 - MIR SINE MIR -62 146 1 320 324 115 17 chr1 31102899 31103186 -211561167 + L2 LINE L2 1749 2063 -1251 200 276 0 17 chr1 31103210 31103268 -211561085 + L3 LINE CR1 1375 1431 -146 278 301 124 47 chr1 31103296 31103380 -211560973 - MIR SINE MIR -12 250 174 2751 33 0 0 chr1 31103380 31103685 -211560668 - AluY SINE Alu -6 305 1 278 301 124 47 chr1 31103685 31103793 -211560560 - MIR SINE MIR -88 174 43 * 333 342 77 21 chr1 31103790 31104024 -211560329 - MIR SINE MIR 0 262 16 605 288 21 58 chr1 31104418 31104658 -211559695 - MIR SINE MIR -12 250 20 395 292 119 16 chr1 31104704 31104889 -211559464 - MIR SINE MIR -10 252 49 272 329 68 48 chr1 31105497 31105643 -211558710 + MIR3 SINE MIR 17 165 -43 2833 127 14 10 chr1 31105748 31106238 -211558115 - L1MB3 LINE L1 -2 6181 5690 303 173 0 0 chr1 31106238 31106290 -211558063 + MLT2B3 LTR ERVL 5 56 -498 2045 169 101 42 chr1 31106470 31106926 -211557427 + MLT2B3 LTR ERVL 71 553 -1 2150 169 14 33 chr1 31106927 31107321 -211557032 - L1MB3 LINE L1 -485 5698 5313 2528 71 0 0 chr1 31107321 31107618 -211556735 + AluY SINE Alu 1 297 -14 2150 169 14 33 chr1 31107618 31107783 -211556570 - L1MB3 LINE L1 -870 5313 5146 3285 112 14 10 chr1 31107819 31108328 -211556025 + MER9 LTR ERVK 1 511 0 598 153 34 25 chr1 31108328 31108446 -211555907 + HERVK9 LTR ERVK 1 119 -5797 * 4805 125 61 53 chr1 31108441 31108681 -211555672 - HERVK9 LTR ERVK -4856 1060 823 195 196 0 71 chr1 31108681 31108737 -211555616 - MER5B DNA MER1_type -72 106 55 4805 125 61 53 chr1 31108737 31109396 -211554957 - HERVK9 LTR ERVK -5093 823 99 3229 123 8 6 chr1 31109413 31109923 -211554430 - MER9 LTR ERVK 0 511 1 2644 87 0 3 chr1 31110048 31110404 -211553949 - THE1A LTR MaLR 0 355 1 788 179 17 0 chr1 31111055 31111228 -211553125 + (CACCAT)n Simple_repeat Simple_repeat 4 179 0 227 238 0 0 chr1 31111228 31111270 -211553083 + (CCA)n Simple_repeat Simple_repeat 1 42 0 1309 223 59 30 chr1 31111271 31111675 -211552678 + LTR52 LTR ERVL 1 416 -5 688 240 80 0 chr1 31111749 31111924 -211552429 - MIR SINE MIR -32 230 42 232 344 22 0 chr1 31111941 31112031 -211552322 - L3b LINE CR1 -188 1395 1304 197 307 34 0 chr1 31112094 31112182 -211552171 + L2 LINE L2 2148 2238 -1076 236 256 228 39 chr1 31112229 31112409 -211551944 - MIR SINE MIR -28 234 21 1403 194 8 88 chr1 31112800 31113197 -211551156 - MLT1A1 LTR MaLR 0 365 1 292 227 182 0 chr1 31113388 31113476 -211550877 - L2 LINE L2 -13 3300 3197 364 313 0 0 chr1 31113592 31113691 -211550662 + MIR SINE MIR 49 147 -61 323 295 14 50 chr1 31114605 31114654 -211549699 - L2 LINE L2 -6 3266 3217 2611 184 24 0 chr1 31114654 31115115 -211549238 - MER70A LTR ERVL 0 472 1 323 295 14 50 chr1 31115115 31115204 -211549149 - L2 LINE L2 -55 3217 3133 315 130 0 0 chr1 31115352 31115406 -211548947 + (CCA)n Simple_repeat Simple_repeat 1 54 0 5717 138 6 43 chr1 31115679 31116683 -211547670 - MSTA-int LTR MaLR -611 969 3 324 175 16 0 chr1 31116685 31116748 -211547605 - MSTA LTR MaLR 0 428 365 425 109 31 0 chr1 31116848 31116912 -211547441 - Alu SINE Alu -243 67 2 1927 173 36 49 chr1 31117060 31117224 -211547129 - MER65C LTR ERV1 0 461 296 1815 145 43 0 chr1 31117224 31117506 -211546847 + AluJb SINE Alu 2 295 -17 2221 105 7 7 chr1 31117508 31117812 -211546541 + AluSq SINE Alu 1 304 -9 1927 173 36 49 chr1 31117812 31118111 -211546242 - MER65C LTR ERV1 -166 295 1 1635 270 15 30 chr1 31118748 31118800 -211545553 - MER31-int LTR ERV1 -816 4055 4004 2274 108 3 0 chr1 31118800 31119088 -211545265 + AluSg SINE Alu 1 289 -21 1635 270 15 30 chr1 31119088 31119278 -211545075 - MER31-int LTR ERV1 -867 4004 3813 2261 103 0 17 chr1 31119278 31119580 -211544773 + AluSx SINE Alu 1 297 -15 1635 270 15 30 chr1 31119580 31119795 -211544558 - MER31-int LTR ERV1 -1058 3813 3604 335 268 0 37 chr1 31119881 31119963 -211544390 - MER31-int LTR ERV1 -977 3959 3881 2234 194 127 46 chr1 31119967 31120777 -211543576 - MER31-int LTR ERV1 -1228 5103 4228 276 200 0 0 chr1 31120790 31120855 -211543498 + (CCA)n Simple_repeat Simple_repeat 1 65 0 906 162 0 0 chr1 31120871 31121050 -211543303 + (CCA)n Simple_repeat Simple_repeat 1 179 0 277 237 0 0 chr1 31121054 31121113 -211543240 + (CAT)n Simple_repeat Simple_repeat 1 59 0 232 222 87 79 chr1 31121151 31121277 -211543076 - MIR SINE MIR -36 226 100 271 191 0 0 chr1 31122327 31122374 -211541979 - L2 LINE L2 0 3272 3226 852 254 46 17 chr1 31122425 31122665 -211541688 + MIR SINE MIR 13 259 -3 278 268 89 18 chr1 31122724 31122836 -211541517 - MIR SINE MIR -73 135 16 729 342 62 28 chr1 31123046 31123543 -211540810 - MLT1L LTR MaLR 0 615 102 204 361 129 0 chr1 31123950 31124213 -211540140 - L2 LINE L2 -337 2977 2681 425 194 5 85 chr1 31124336 31124482 -211539871 - MIR3 SINE MIR -22 186 46 259 314 17 0 chr1 31125139 31125257 -211539096 + MIR SINE MIR 30 149 -59 284 283 92 26 chr1 31126116 31126268 -211538085 - MIR SINE MIR -97 165 4 210 118 0 0 chr1 31126523 31126557 -211537796 + (GA)n Simple_repeat Simple_repeat 1 34 0 231 111 0 0 chr1 31127330 31127366 -211536987 - MIR SINE MIR -8 254 219 267 104 0 0 chr1 31127872 31127920 -211536433 + (TC)n Simple_repeat Simple_repeat 1 48 0 219 312 9 28 chr1 31128101 31128210 -211536143 + L2 LINE L2 2935 3041 -231 691 284 61 40 chr1 31128322 31128699 -211535654 + LTR16C LTR ERVL 97 481 -10 223 339 93 8 chr1 31129618 31129736 -211534617 - MIR SINE MIR -64 144 17 549 262 55 14 chr1 31129816 31129961 -211534392 + MIR3 SINE MIR 21 171 -37 180 275 87 0 chr1 31129989 31130058 -211534295 + MIR SINE MIR 111 185 -77 224 379 46 20 chr1 31130473 31130626 -211533727 + MIR SINE MIR 3 159 -103 1892 166 7 0 chr1 31130628 31130923 -211533430 - AluJo SINE Alu -15 297 1 203 312 13 0 chr1 31131604 31131681 -211532672 - MIR SINE MIR -137 125 48 468 284 34 14 chr1 31131935 31132083 -211532270 - MIR3 SINE MIR -10 198 48 276 330 30 0 chr1 31132776 31132876 -211531477 - MIR SINE MIR -109 153 51 334 350 0 10 chr1 31133151 31133254 -211531099 + MIR SINE MIR 21 122 -86 217 147 29 73 chr1 31133610 31133678 -211530675 + A-rich Low_complexity Low_complexity 3 67 0 267 177 123 62 chr1 31135494 31135624 -211528729 + MLT1K LTR MaLR 278 415 -173 533 330 20 5 chr1 31136894 31137091 -211527262 - MIR SINE MIR -32 230 31 418 267 53 0 chr1 31137670 31137801 -211526552 + MLT1I LTR MaLR 250 387 -22 566 328 43 8 chr1 31138136 31138371 -211525982 + MIR SINE MIR 2 244 -18 927 234 37 11 chr1 31138447 31138716 -211525637 + MLT2D LTR ERVL 91 366 -48 239 406 0 0 chr1 31138904 31139042 -211525311 + (CA)n Simple_repeat Simple_repeat 1 138 0 21 0 0 0 chr1 31139245 31139266 -211525087 + AT_rich Low_complexity Low_complexity 1 21 0 438 222 65 0 chr1 31140007 31140115 -211524238 - MIR SINE MIR -87 175 61 554 211 63 14 chr1 31140518 31140660 -211523693 - MIR SINE MIR -79 183 35 187 245 19 19 chr1 31140892 31140945 -211523408 - MIR3 SINE MIR -12 196 144 589 252 129 29 chr1 31141379 31141589 -211522764 + MIR SINE MIR 19 249 -13 190 274 148 59 chr1 31142278 31142413 -211521940 + MIR SINE MIR 86 232 -30 820 229 49 0 chr1 31142475 31142698 -211521655 + MIR SINE MIR 15 248 -14 250 176 20 20 chr1 31142875 31142926 -211521427 - MER4-int LTR ERV1 -5443 1155 1105 498 271 174 0 chr1 31143288 31143506 -211520847 + MER102b DNA MER1_type 83 338 -3 422 212 26 35 chr1 31143583 31143696 -211520657 + L2 LINE L2 3187 3298 -15 778 252 70 14 chr1 31144171 31144385 -211519968 + MIR SINE MIR 8 233 -29 186 198 0 49 chr1 31145073 31145154 -211519199 + GA-rich Low_complexity Low_complexity 3 79 0 380 311 59 17 chr1 31145259 31145378 -211518975 - L2 LINE L2 -31 3241 3118 885 260 51 4 chr1 31145454 31145689 -211518664 + MIR SINE MIR 17 262 0 1104 253 104 69 chr1 31145860 31146398 -211517955 + MLT1K LTR MaLR 22 578 -10 190 297 108 0 chr1 31146411 31146522 -211517831 - L2 LINE L2 -307 2965 2843 248 221 59 0 chr1 31146829 31146897 -211517456 + GA-rich Low_complexity Low_complexity 1 72 0 339 250 30 60 chr1 31146926 31147004 -211517349 - MIR SINE MIR -63 145 69 1860 171 13 3 chr1 31147004 31147303 -211517050 + AluJo SINE Alu 1 302 -10 339 250 30 60 chr1 31147303 31147324 -211517029 - MIR SINE MIR -139 69 49 879 310 8 12 chr1 31147454 31147699 -211516654 - MIR SINE MIR 0 262 19 231 175 35 35 chr1 31148065 31148122 -211516231 - L2 LINE L2 -77 3195 3139 255 299 198 34 chr1 31148295 31148563 -211515790 - L2 LINE L2 -425 2889 2578 241 248 16 108 chr1 31148613 31148742 -211515611 + L2 LINE L2 3140 3256 -57 329 269 121 86 chr1 31149399 31149737 -211514616 - L2 LINE L2 -94 3178 2829 214 333 74 0 chr1 31150195 31150303 -211514050 - L2 LINE L2 -7 3265 3150 663 241 49 30 chr1 31150435 31150638 -211513715 + MIR SINE MIR 40 246 -16 200 276 186 30 chr1 31150765 31151029 -211513324 - L2 LINE L2 -446 2868 2564 321 310 0 0 chr1 31152132 31152219 -211512134 + (CA)n Simple_repeat Simple_repeat 2 88 0 430 176 108 29 chr1 31152239 31152341 -211512012 + MIR SINE MIR 38 147 -61 233 298 0 0 chr1 31153199 31153268 -211511085 + MIR SINE MIR 77 146 -62 341 311 123 23 chr1 31155028 31155247 -211509106 - MIR SINE MIR -18 244 4 239 218 105 121 chr1 31155249 31155373 -211508980 + MIR SINE MIR 111 232 -30 336 83 0 0 chr1 31155391 31155439 -211508914 + (CA)n Simple_repeat Simple_repeat 1 48 0 591 321 60 15 chr1 31155590 31155858 -211508495 + L1ME4a LINE L1 5574 5853 -268 480 273 106 58 chr1 31156530 31156805 -211507548 - L2 LINE L2 0 3313 3026 207 200 0 0 chr1 31157713 31157753 -211506600 + (TATG)n Simple_repeat Simple_repeat 2 41 0 1640 173 10 36 chr1 31157930 31158231 -211506122 - AluJo SINE Alu -19 293 1 4130 251 94 11 chr1 31158502 31159611 -211504742 + L1ME2 LINE L1 2635 3897 -2249 1794 155 0 38 chr1 31159611 31159902 -211504451 + AluJb SINE Alu 1 280 -32 4130 251 94 11 chr1 31159902 31160264 -211504089 + L1ME2 LINE L1 3897 4228 -1918 3731 162 40 26 chr1 31160262 31162422 -211501931 + L1ME2 LINE L1 4800 6086 -78 * 183 100 0 0 chr1 31162552 31162582 -211501771 + (TCTCC)n Simple_repeat Simple_repeat 3 32 0 720 232 80 12 chr1 31163385 31163673 -211500680 + MLT1F LTR MaLR 193 542 0 848 279 112 32 chr1 31164114 31164616 -211499737 + L1ME4a LINE L1 5559 6100 -21 933 199 0 0 chr1 31164889 31165050 -211499303 - MIR SINE MIR -96 166 6 1973 145 24 32 chr1 31165147 31165526 -211498827 - L1PA16 LINE L1 -1 6165 5790 268 243 57 64 chr1 31165730 31165870 -211498483 + MLT1J LTR MaLR 334 472 -39 259 138 75 11 chr1 31165924 31166018 -211498335 + (TA)n Simple_repeat Simple_repeat 1 100 0 399 211 33 3 chr1 31166032 31166346 -211498007 + (TA)n Simple_repeat Simple_repeat 1 323 0 333 261 33 22 chr1 31166357 31166449 -211497904 + L1MC4 LINE L1 6613 6705 -1337 355 221 32 0 chr1 31166468 31166626 -211497727 + (TA)n Simple_repeat Simple_repeat 1 163 0 373 72 60 0 chr1 31166918 31167001 -211497352 + (TA)n Simple_repeat Simple_repeat 2 89 0 334 264 33 11 chr1 31167001 31167092 -211497261 - L1MC4 LINE L1 -1337 6705 6613 1798 267 72 4 chr1 31167092 31167774 -211496579 + L1MEc LINE L1 1587 2314 -4082 366 238 0 0 chr1 31167741 31167825 -211496528 + L1ME1 LINE L1 5996 6079 -156 * 350 243 54 0 chr1 31167828 31167939 -211496414 + L1MA10 LINE L1 6217 6333 -1 318 333 89 6 chr1 31168067 31168247 -211496106 + L3 LINE CR1 643 837 -740 560 232 219 22 chr1 31168482 31168685 -211495668 - MIR SINE MIR -2 260 17 301 339 119 0 chr1 31168698 31168875 -211495478 + L3 LINE CR1 982 1179 -398 282 235 71 35 chr1 31168910 31168995 -211495358 - L2 LINE L2 -50 3263 3176 201 147 0 0 chr1 31169000 31169034 -211495319 + (CA)n Simple_repeat Simple_repeat 1 34 0 1095 192 113 0 chr1 31169046 31169305 -211495048 - L1ME LINE L1 -508 5656 5360 250 225 14 14 chr1 31169329 31169400 -211494953 + (TA)n Simple_repeat Simple_repeat 2 72 0 386 293 9 35 chr1 31169401 31169517 -211494836 + L1MC4 LINE L1 6593 6705 -1337 309 322 17 26 chr1 31169456 31169571 -211494782 - L1MC4 LINE L1 -1339 6703 6590 * 234 240 10 39 chr1 31169606 31169710 -211494643 + (CATATA)n Simple_repeat Simple_repeat 1 101 0 1907 77 11 4 chr1 31169823 31170096 -211494257 - HERVL-A2 LTR ERVL -115 5539 5265 * 34526 67 3 3 chr1 31170089 31174563 -211489790 - HERVL-A2 LTR ERVL -1180 4474 1 385 38 38 0 chr1 31174563 31174616 -211489737 - MLT2A2 LTR ERVL 0 453 399 323 222 111 0 chr1 31174617 31174698 -211489655 - L1MC4 LINE L1 -1339 6703 6614 2738 62 49 10 chr1 31174698 31175087 -211489266 - MLT2A1 LTR ERVL -40 404 1 204 158 0 0 chr1 31175143 31175181 -211489172 + GA-rich Low_complexity Low_complexity 1 38 0 269 312 37 24 chr1 31175283 31175475 -211488878 - MIR SINE MIR -18 244 50 377 272 165 27 chr1 31175547 31175771 -211488582 - LTR41 LTR ERVL -13 760 506 575 186 78 12 chr1 31176027 31176194 -211488159 - LTR41 LTR ERVL -579 194 17 601 254 42 11 chr1 31176199 31176388 -211487965 + MER58 DNA MER1_type 1 195 -2225 257 214 29 0 chr1 31176361 31176430 -211487923 + MER58 DNA MER1_type 2259 2329 -91 1581 148 122 10 chr1 31176430 31176734 -211487619 + MER44D DNA MER2_type 1 608 -1 384 214 20 0 chr1 31176734 31176828 -211487525 + MER58 DNA MER1_type 2321 2416 -4 2464 100 0 0 chr1 31176848 31177158 -211487195 + AluSx SINE Alu 1 310 -2 1878 95 4 4 chr1 31177343 31177586 -211486767 + AluSx SINE Alu 17 259 -53 316 219 37 61 chr1 31177896 31177978 -211486375 - MIR3 SINE MIR -21 187 108 259 293 112 9 chr1 31178001 31178117 -211486236 + MIR SINE MIR 16 143 -65 769 231 78 80 chr1 31179124 31179522 -211484831 - LTR16A1 LTR ERVL -5 452 56 1008 270 73 16 chr1 31179883 31180268 -211484085 - L1ME LINE L1 -440 5724 5318 430 293 49 30 chr1 31180269 31180433 -211483920 - L1ME LINE L1 -1680 4466 4300 181 239 0 98 chr1 31180551 31180643 -211483710 + MIR SINE MIR 124 206 -56 * 828 228 35 5 chr1 31180642 31180839 -211483514 - MIR SINE MIR -59 203 1 281 189 95 14 chr1 31180865 31180939 -211483414 + MIR SINE MIR 178 257 -5 326 368 34 10 chr1 31180941 31181145 -211483208 - L2 LINE L2 -39 3233 3025 264 268 62 31 chr1 31182746 31182843 -211481510 - MIR3 SINE MIR -51 157 58 210 171 0 0 chr1 31183118 31183153 -211481200 - MIR SINE MIR -6 256 222 398 306 98 21 chr1 31183179 31183372 -211480981 - MIR SINE MIR -9 253 46 571 221 67 20 chr1 31183669 31183846 -211480507 - MIR SINE MIR -61 147 3 339 316 0 0 chr1 31184146 31184241 -211480112 + CT-rich Low_complexity Low_complexity 1 95 0 221 0 35 0 chr1 31185280 31185309 -211479044 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 346 247 67 30 chr1 31186256 31186388 -211477965 + MIR SINE MIR 88 227 -35 1293 289 34 48 chr1 31186724 31187785 -211476568 - L1ME3 LINE L1 -199 5963 4915 1342 283 114 43 chr1 31187906 31188847 -211475506 - L1ME3 LINE L1 -1384 4762 3698 2082 125 3 17 chr1 31188847 31189169 -211475184 - AluSg SINE Alu 0 310 1 1342 283 114 43 chr1 31189169 31189559 -211474794 - L1ME3 LINE L1 -2448 3698 3337 240 316 30 71 chr1 31189567 31189735 -211474618 - MIR SINE MIR -57 205 45 271 350 69 72 chr1 31189968 31190274 -211474079 - L2 LINE L2 -50 3222 2918 3443 218 45 34 chr1 31190386 31190688 -211473665 + MER45B DNA AcHobo 5 302 -1279 4092 136 34 6 chr1 31190688 31191370 -211472983 + L1MB3 LINE L1 5476 6176 -7 3443 218 45 34 chr1 31191370 31191956 -211472397 + MER45B DNA AcHobo 302 903 -137 2721 237 30 39 chr1 31191956 31192192 -211472161 + L1M4 LINE L1 3643 3879 -2267 1693 210 0 10 chr1 31192192 31192502 -211471851 + AluJo SINE Alu 1 307 -5 2721 237 30 39 chr1 31192502 31192985 -211471368 + L1M4 LINE L1 3879 4356 -1790 2227 115 0 7 chr1 31192985 31193281 -211471072 - AluSx SINE Alu -18 294 1 2721 237 30 39 chr1 31193281 31193418 -211470935 + L1M4 LINE L1 4356 4493 -1653 457 258 60 31 chr1 31193426 31193712 -211470641 + L1MEc LINE L1 1325 1584 -4956 513 172 25 49 chr1 31193724 31193846 -211470507 + MLT1E2 LTR MaLR 505 623 -3 449 277 18 6 chr1 31193865 31194031 -211470322 + L1MCc LINE L1 152 319 -6104 1216 259 75 32 chr1 31194065 31194765 -211469588 + L1MCc LINE L1 1096 1868 -5073 438 20 0 0 chr1 31194765 31194816 -211469537 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 1216 259 75 32 chr1 31194816 31195066 -211469287 + L1MCc LINE L1 1868 2106 -4835 308 171 29 57 chr1 31195078 31195148 -211469205 - L1MCa LINE L1 -4364 2062 1995 2581 110 56 17 chr1 31195277 31195713 -211468640 + MLT2A1 LTR ERVL 32 515 0 205 330 36 18 chr1 31196678 31196790 -211467563 + MIR SINE MIR 103 216 -46 352 163 71 61 chr1 31196838 31196936 -211467417 + MIR3 SINE MIR 64 162 -46 361 272 178 11 chr1 31196950 31197130 -211467223 + L2 LINE L2 3010 3219 -94 206 162 27 0 chr1 31197155 31197192 -211467161 + CT-rich Low_complexity Low_complexity 3 40 0 232 327 0 35 chr1 31197204 31197317 -211467036 - L2 LINE L2 -38 3275 3167 182 259 17 17 chr1 31198603 31198661 -211465692 - MIR3 SINE MIR -31 177 120 349 306 236 5 chr1 31198979 31199195 -211465158 - L3 LINE CR1 0 1577 1312 645 171 0 0 chr1 31199553 31199699 -211464654 + (CA)n Simple_repeat Simple_repeat 1 146 0 398 331 0 8 chr1 31201653 31201774 -211462579 + MIR SINE MIR 13 132 -130 * 431 252 122 16 chr1 31201772 31201895 -211462458 - MIR SINE MIR -109 153 18 1508 198 0 15 chr1 31201931 31202204 -211462149 - AluJo SINE Alu -4 308 40 254 301 21 43 chr1 31202371 31202464 -211461889 + MIR SINE MIR 166 256 -6 180 241 35 17 chr1 31202839 31202897 -211461456 + MIR SINE MIR 64 122 -140 * 2525 99 43 8 chr1 31202904 31203256 -211461097 + THE1B LTR MaLR 1 364 0 333 331 57 6 chr1 31203256 31203402 -211460951 - MIR3 SINE MIR -11 197 41 285 344 57 0 chr1 31203375 31203497 -211460856 + MIR3 SINE MIR 7 135 -73 * 421 278 9 0 chr1 31203783 31203891 -211460462 + MIR SINE MIR 154 262 0 281 191 22 45 chr1 31204680 31204769 -211459584 + MLT1K LTR MaLR 491 577 -11 394 270 145 30 chr1 31204824 31205024 -211459329 - MIR SINE MIR -18 244 22 231 88 0 0 chr1 31205625 31205659 -211458694 + (CTCA)n Simple_repeat Simple_repeat 2 35 0 192 77 0 0 chr1 31205936 31205962 -211458391 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 192 125 0 0 chr1 31206186 31206218 -211458135 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 333 255 185 19 chr1 31206246 31206403 -211457950 - MIR SINE MIR -78 184 2 272 261 0 0 chr1 31206549 31206614 -211457739 - MIR SINE MIR -63 145 81 361 250 204 0 chr1 31207201 31207309 -211457044 + L2 LINE L2 3184 3313 0 191 384 98 0 chr1 31207400 31207512 -211456841 - MIR SINE MIR -63 145 23 961 229 9 14 chr1 31207677 31207895 -211456458 - MER20 DNA MER1_type -1 218 2 400 280 24 16 chr1 31207933 31208058 -211456295 + L2 LINE L2 3165 3290 -23 646 207 40 0 chr1 31208726 31208876 -211455477 - L1MA10 LINE L1 -4 6330 6175 1704 222 71 31 chr1 31208876 31209384 -211454969 - L1ME1 LINE L1 -151 6015 5488 8003 235 65 20 chr1 31209422 31209882 -211454471 - L1ME1 LINE L1 -749 5397 4959 1598 178 6 68 chr1 31209882 31210203 -211454150 - AluJb SINE Alu -11 301 1 8003 235 65 20 chr1 31210203 31212517 -211451836 - L1ME1 LINE L1 -1187 4959 2515 2456 228 52 16 chr1 31212517 31214074 -211450279 - L1MC/D LINE L1 -600 5711 4654 472 291 0 6 chr1 31214090 31214272 -211450081 - L1MC/D LINE L1 -1610 4605 4425 180 0 0 0 chr1 31214300 31214320 -211450033 + (TG)n Simple_repeat Simple_repeat 1 20 0 4682 259 87 15 chr1 31214352 31215053 -211449300 - L1MC/D LINE L1 -4602 1794 1145 2124 124 3 16 chr1 31215053 31215360 -211448993 - AluSx SINE Alu -7 305 3 4682 259 87 15 chr1 31215360 31216300 -211448053 - L1MC/D LINE L1 -5251 1145 35 6307 132 17 11 chr1 31216620 31217164 -211447189 - L1MC1 LINE L1 -5 6328 5772 2321 224 30 60 chr1 31217164 31217795 -211446558 - LTR9 LTR ERV1 0 612 1 6307 132 17 11 chr1 31217795 31218293 -211446060 - L1MC1 LINE L1 -561 5772 5279 1742 160 92 37 chr1 31218293 31218694 -211445659 - LTR44 LTR ERV1 0 519 97 1861 167 10 0 chr1 31218699 31218987 -211445366 - AluJb SINE Alu -21 291 1 330 266 0 0 chr1 31218987 31219075 -211445278 - L1MC1 LINE L1 -869 5277 5190 701 282 17 21 chr1 31219134 31219368 -211444985 - MIR SINE MIR -2 260 28 541 266 76 16 chr1 31219964 31220148 -211444205 - MIR SINE MIR -22 240 46 191 176 0 29 chr1 31220217 31220251 -211444102 + MIR SINE MIR 118 150 -58 200 208 0 19 chr1 31220406 31220459 -211443894 + (CAGGG)n Simple_repeat Simple_repeat 4 55 0 732 221 5 6 chr1 31220853 31221919 -211442434 + (CA)n Simple_repeat Simple_repeat 1 1065 0 403 305 30 8 chr1 31222440 31222571 -211441782 - MIR3 SINE MIR -38 170 37 604 291 23 6 chr1 31223405 31223580 -211440773 + MIR SINE MIR 73 250 -12 397 298 122 33 chr1 31223604 31224030 -211440323 - L2 LINE L2 0 3272 2809 328 255 104 9 chr1 31224388 31224494 -211439859 - L2 LINE L2 -13 3259 3144 407 207 147 0 chr1 31225890 31226006 -211438347 - MIR SINE MIR -115 147 15 238 269 87 0 chr1 31227804 31227908 -211436445 - MLT1L LTR MaLR -11 604 492 314 293 12 0 chr1 31228518 31228600 -211435753 - L2 LINE L2 -1 3312 3230 199 333 0 0 chr1 31228860 31228908 -211435445 - MIR SINE MIR -117 91 44 1002 195 0 0 chr1 31229080 31229249 -211435104 + FRAM SINE Alu 1 166 -10 522 279 55 16 chr1 31229858 31230041 -211434312 + MIR SINE MIR 2 191 -71 198 340 131 21 chr1 31230051 31230242 -211434111 + MIR SINE MIR 33 244 -18 962 248 29 25 chr1 31230345 31230587 -211433766 + MIR SINE MIR 20 262 0 225 253 36 36 chr1 31230599 31230682 -211433671 - MIR3 SINE MIR -15 193 111 237 312 48 0 chr1 31230893 31231018 -211433335 - L1ME4a LINE L1 -4 6117 5987 1154 273 70 38 chr1 31231066 31231539 -211432814 - LTR53 LTR ERVL -11 508 21 326 256 39 121 chr1 31231591 31231872 -211432481 - MLT1I LTR MaLR -61 348 91 416 280 150 16 chr1 31232244 31232944 -211431409 + L2 LINE L2 2508 3303 -10 192 77 0 0 chr1 31233081 31233107 -211431246 + (GCCTG)n Simple_repeat Simple_repeat 4 29 0 351 0 0 0 chr1 31233803 31233842 -211430511 + (TTA)n Simple_repeat Simple_repeat 2 40 0 195 262 0 0 chr1 31234335 31234377 -211429976 - MIR SINE MIR -6 256 215 203 269 72 12 chr1 31234721 31234806 -211429547 - MIR SINE MIR -93 115 45 260 324 34 68 chr1 31235717 31235865 -211428488 - MIR3 SINE MIR -32 176 34 614 215 6 74 chr1 31235905 31236068 -211428285 + MIR SINE MIR 101 252 -10 193 207 35 17 chr1 31236143 31236201 -211428152 - L3b LINE CR1 -423 1160 1102 291 317 50 52 chr1 31236447 31236614 -211427739 + L1MEd LINE L1 1114 1280 -5136 4383 165 11 8 chr1 31236614 31237334 -211427019 + MER72 LTR ERV1 1 722 0 291 317 50 52 chr1 31237334 31237604 -211426749 + L1MEd LINE L1 1280 1550 -4866 374 178 100 11 chr1 31237788 31237889 -211426464 + L1ME3A LINE L1 5919 6027 -137 261 317 67 35 chr1 31237942 31238226 -211426127 + HAL1 LINE L1 1453 1745 -762 852 171 0 0 chr1 31238409 31238538 -211425815 + FLAM_A SINE Alu 1 129 -4 355 291 67 68 chr1 31238539 31238874 -211425479 + L1MEd LINE L1 2087 3476 -2950 244 246 46 0 chr1 31238894 31238959 -211425394 + MIR SINE MIR 84 151 -111 541 317 29 10 chr1 31239069 31239277 -211425076 - MIR SINE MIR -28 234 23 344 223 27 62 chr1 31239223 31239335 -211425018 + MIR SINE MIR 30 137 -71 * 219 69 0 0 chr1 31239641 31239670 -211424683 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 361 299 60 8 chr1 31239803 31239937 -211424416 + L2 LINE L2 3108 3248 -65 305 240 52 5 chr1 31239949 31240060 -211424293 + MIR SINE MIR 72 150 -58 293 277 134 27 chr1 31240442 31240554 -211423799 - MIR SINE MIR -111 151 28 346 245 20 49 chr1 31242099 31242201 -211422152 - L2 LINE L2 0 3272 3174 195 250 33 17 chr1 31242296 31242356 -211421997 - MIR SINE MIR -56 152 92 253 326 17 17 chr1 31242899 31243074 -211421279 + (TTTA)n Simple_repeat Simple_repeat 3 177 0 * 413 250 22 43 chr1 31243064 31243248 -211421105 + (TTCA)n Simple_repeat Simple_repeat 1 180 0 1923 132 3 21 chr1 31243462 31243770 -211420583 - AluSq SINE Alu 0 303 1 1559 162 44 0 chr1 31243835 31244106 -211420247 - MER47B DNA MER2_type -1 417 135 3218 141 69 0 chr1 31244123 31244671 -211419682 - LTR38B LTR ERV1 -24 586 1 438 229 0 0 chr1 31244683 31244766 -211419587 - MER47B DNA MER2_type -335 83 1 800 270 55 42 chr1 31244917 31245321 -211419032 - LTR16C LTR ERVL 0 491 83 306 271 178 8 chr1 31245447 31245576 -211418777 - MIR3 SINE MIR -17 191 41 306 231 13 39 chr1 31246485 31246563 -211417790 + L2 LINE L2 2590 2665 -649 334 273 67 20 chr1 31247945 31248146 -211416207 - MIR SINE MIR -35 227 20 348 308 115 0 chr1 31248364 31248494 -211415859 + MIR SINE MIR 111 255 -7 283 197 16 16 chr1 31248982 31249043 -211415310 + L2 LINE L2 2590 2650 -664 322 260 163 8 chr1 31249444 31249567 -211414786 - MIR SINE MIR -108 154 13 285 294 119 28 chr1 31250043 31250220 -211414133 + L3 LINE CR1 1066 1258 -319 2095 191 25 17 chr1 31250220 31250716 -211413637 - Tigger7 DNA MER2_type 0 2487 34 451 232 24 24 chr1 31252952 31253077 -211411276 + MIR SINE MIR 19 143 -119 1073 196 26 93 chr1 31254046 31254657 -211409696 - MER4C LTR ERV1 0 465 1 502 311 14 0 chr1 31254730 31254878 -211409475 - MIR SINE MIR -111 151 2 452 206 56 54 chr1 31255481 31255659 -211408694 + MIR SINE MIR 15 184 -52 262 228 13 76 chr1 31256226 31256305 -211408048 + MIR SINE MIR 82 155 -107 198 322 56 11 chr1 31256384 31256474 -211407879 + MIR SINE MIR 151 244 -18 2491 196 12 18 chr1 31256533 31257241 -211407112 - LTR27 LTR ERV1 0 636 3 730 254 15 45 chr1 31257494 31257695 -211406658 + MIR3 SINE MIR 12 206 -2 348 299 51 45 chr1 31257986 31258163 -211406190 - MLT1K LTR MaLR -73 515 338 910 126 224 32 chr1 31258205 31258498 -211405855 + MER31B LTR ERV1 1 466 0 467 338 36 14 chr1 31258512 31258731 -211405622 - MLT1K LTR MaLR -324 264 41 3294 224 91 19 chr1 31258971 31259273 -211405080 + L1MC3 LINE L1 6709 6988 -797 216 67 0 0 chr1 31259273 31259303 -211405050 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 3294 224 91 19 chr1 31259303 31259991 -211404362 + L1MC3 LINE L1 6988 7770 -15 309 342 8 8 chr1 31260003 31260123 -211404230 - MIR3 SINE MIR -40 168 49 748 297 63 48 chr1 31261022 31261416 -211402937 + L1MC4a LINE L1 5512 5911 -1897 3948 265 66 31 chr1 31261540 31263230 -211401123 + L2 LINE L2 1549 3312 -1 807 274 120 33 chr1 31263295 31263810 -211400543 - MLT1G LTR MaLR -5 562 3 3324 151 31 0 chr1 31264305 31264860 -211399493 + LTR31 LTR ERV1 47 618 -1 315 302 42 37 chr1 31265251 31265564 -211398789 - MLT1G-int LTR MaLR -770 601 292 888 261 64 47 chr1 31265682 31266201 -211398152 - MLT1G LTR MaLR -7 560 18 382 310 9 0 chr1 31266722 31266835 -211397518 + MLT1G LTR MaLR 111 224 -366 2097 94 23 55 chr1 31267173 31267480 -211396873 - AluSx SINE Alu -15 297 1 2191 244 64 15 chr1 31267570 31268893 -211395460 + L1MDb LINE L1 876 3392 -3014 3388 214 60 105 chr1 31268915 31269456 -211394897 + L1MDb LINE L1 3733 4297 -2288 216 86 0 0 chr1 31269456 31269491 -211394862 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3388 214 60 105 chr1 31269491 31269645 -211394708 + L1MDb LINE L1 4297 4456 -2129 2284 98 3 0 chr1 31269645 31269973 -211394380 + AluSx SINE Alu 4 312 0 3388 214 60 105 chr1 31269973 31270670 -211393683 + L1MDb LINE L1 4456 5183 -1402 479 162 0 0 chr1 31270670 31270744 -211393609 + AluJ/FRAM SINE Alu 224 297 -15 3388 214 60 105 chr1 31270744 31271199 -211393154 + L1MDb LINE L1 5183 5578 -1007 3161 145 35 9 chr1 31271199 31271744 -211392609 + MER89 LTR ERV1 1 559 0 3388 214 60 105 chr1 31271744 31271998 -211392355 + L1MDb LINE L1 5578 5842 -743 341 184 0 40 chr1 31272088 31272160 -211392193 + MER82 DNA MER2_type 138 206 -447 1771 235 162 24 chr1 31272160 31272820 -211391533 + LTR1B LTR ERV1 1 751 -75 2052 221 20 0 chr1 31272938 31273381 -211390972 + MER82 DNA MER2_type 201 652 -1 369 0 0 0 chr1 31273413 31273454 -211390899 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 286 63 71 chr1 31273649 31273775 -211390578 - L2 LINE L2 -8 3305 3181 214 247 204 11 chr1 31275080 31275173 -211389180 - MIR SINE MIR -118 144 34 191 255 0 39 chr1 31275337 31275388 -211388965 + L2 LINE L2 3246 3294 -19 225 299 65 37 chr1 31275500 31275607 -211388746 - L2 LINE L2 -1 3312 3203 254 386 88 23 chr1 31275761 31275932 -211388421 + L3 LINE CR1 900 1081 -496 401 279 0 10 chr1 31275935 31276039 -211388314 - MIR SINE MIR -97 165 63 490 245 28 117 chr1 31276047 31276109 -211388244 - MLT1J LTR MaLR -280 231 165 309 118 0 0 chr1 31276109 31276160 -211388193 + (CA)n Simple_repeat Simple_repeat 2 52 0 490 245 28 117 chr1 31276160 31276195 -211388158 - MLT1J LTR MaLR -346 165 128 1355 144 208 117 chr1 31276195 31276559 -211387794 + MER4A LTR ERV1 1 433 -167 2101 164 0 0 chr1 31276559 31276869 -211387484 - AluSx SINE Alu -2 310 1 1355 144 208 117 chr1 31276869 31277052 -211387301 + MER4A LTR ERV1 433 598 -2 490 245 28 117 chr1 31277052 31277202 -211387151 - MLT1J LTR MaLR -383 128 5 792 303 113 22 chr1 31277518 31277974 -211386379 - L2 LINE L2 0 3272 2784 394 208 0 0 chr1 31278969 31279041 -211385312 - MIR SINE MIR -142 120 49 2723 167 34 6 chr1 31279159 31279632 -211384721 + MER66B LTR ERV1 1 486 0 3578 216 83 24 chr1 31279646 31280571 -211383782 + MER66B-int LTR ERV1 116 1095 -5581 626 76 0 0 chr1 31280581 31280660 -211383693 + MADE1 DNA Mariner 1 79 -1 698 245 85 20 chr1 31280708 31280908 -211383445 + MER66B-int LTR ERV1 2890 3102 -3574 7335 166 23 28 chr1 31281001 31282371 -211381982 + MER66B-int LTR ERV1 1210 2572 -4104 1683 103 0 0 chr1 31282368 31282601 -211381752 + MER66B-int LTR ERV1 4962 5194 -1482 * 1205 187 8 12 chr1 31282600 31282841 -211381512 + MER66B-int LTR ERV1 2592 2831 -3845 * 12975 117 13 13 chr1 31282892 31283138 -211381215 + MER66B-int LTR ERV1 4603 4848 -1828 4776 43 5 0 chr1 31283138 31283713 -211380640 + L1PA7 LINE L1 5577 6154 0 12975 117 13 13 chr1 31283713 31285518 -211378835 + MER66B-int LTR ERV1 4847 6654 -22 2403 164 40 6 chr1 31285531 31286000 -211378353 + MER66B LTR ERV1 2 486 0 198 244 0 0 chr1 31286266 31286311 -211378042 + MIR SINE MIR 69 113 -149 207 292 0 14 chr1 31286795 31286867 -211377486 + G-rich Low_complexity Low_complexity 4 74 0 446 282 82 39 chr1 31287243 31287498 -211376855 + L2 LINE L2 2985 3250 -63 302 328 46 15 chr1 31287989 31288120 -211376233 + L2 LINE L2 3179 3313 0 239 340 47 0 chr1 31288528 31288634 -211375719 + L2 LINE L2 3144 3254 -18 272 346 26 39 chr1 31288642 31288798 -211375555 + MIR SINE MIR 88 241 -21 305 321 9 0 chr1 31289344 31289450 -211374903 - MIR SINE MIR -72 136 30 309 270 9 27 chr1 31290389 31290500 -211373853 + MIR SINE MIR 16 124 -84 589 108 118 0 chr1 31290501 31290603 -211373750 - AluSg/x SINE Alu -16 293 180 332 294 135 0 chr1 31290626 31290752 -211373601 + MIR SINE MIR 120 262 0 276 369 15 15 chr1 31290753 31290883 -211373470 - L2 LINE L2 0 3313 3184 290 306 50 50 chr1 31291009 31291208 -211373145 - L2 LINE L2 -798 2516 2318 915 220 11 0 chr1 31292057 31292234 -211372119 - MIR SINE MIR -76 186 8 481 313 62 70 chr1 31292422 31292937 -211371416 - LTR67 LTR ERVL -1 556 46 229 236 95 23 chr1 31293556 31293650 -211370703 + MIR SINE MIR 41 141 -67 357 306 35 12 chr1 31294060 31294233 -211370120 + GA-rich Low_complexity Low_complexity 2 178 0 2175 109 0 7 chr1 31294234 31294548 -211369805 + AluSx SINE Alu 1 312 0 275 323 3 57 chr1 31294565 31294886 -211369467 + GA-rich Low_complexity Low_complexity 1 303 0 2155 117 6 25 chr1 31295181 31295497 -211368856 + AluSx SINE Alu 1 310 -2 441 301 29 0 chr1 31295513 31295649 -211368704 + MIR3 SINE MIR 9 148 -60 199 267 81 109 chr1 31295695 31295916 -211368437 - MIR SINE MIR 0 262 48 626 312 36 20 chr1 31296671 31296918 -211367435 + MIR SINE MIR 10 260 -2 372 284 92 0 chr1 31297204 31297345 -211367008 + MIR3 SINE MIR 33 186 -22 1692 122 0 4 chr1 31297997 31298234 -211366119 - AluSq SINE Alu -7 306 71 246 310 69 47 chr1 31299287 31299419 -211364934 + MIR SINE MIR 3 133 -75 219 409 83 0 chr1 31299524 31299656 -211364697 + L2 LINE L2 3112 3254 -18 302 339 43 26 chr1 31299691 31299806 -211364547 - HAL1b LINE L1 -1147 201 85 2204 135 0 3 chr1 31299853 31300165 -211364188 - AluSx SINE Alu -1 311 1 404 37 19 0 chr1 31300182 31300236 -211364117 + (CA)n Simple_repeat Simple_repeat 2 56 0 1155 65 18 6 chr1 31301115 31301285 -211363068 + (TTTC)n Simple_repeat Simple_repeat 3 174 0 2084 117 11 7 chr1 31301294 31301700 -211362653 - AluSx SINE Alu 0 407 1 799 293 119 23 chr1 31302598 31303431 -211360922 + L2 LINE L2 2396 3308 -5 187 246 291 25 chr1 31304500 31304699 -211359654 + L2 LINE L2 2448 2699 -615 379 211 133 0 chr1 31304727 31304817 -211359536 + MER69 DNA AcHobo 2 103 -1123 * 2073 234 20 27 chr1 31304811 31305404 -211358949 + MER69 DNA AcHobo 1938 2526 0 183 339 85 7 chr1 31305455 31305738 -211358615 + L2 LINE L2 2819 3123 -190 215 375 12 0 chr1 31305881 31305961 -211358392 + L2 LINE L2 3182 3262 -10 465 274 20 13 chr1 31305962 31306115 -211358238 + L1ME4a LINE L1 5528 5681 -440 369 241 26 38 chr1 31306142 31306267 -211358086 + MIR SINE MIR 34 155 -58 1019 122 61 0 chr1 31306419 31306633 -211357720 - MER33 DNA MER1_type -16 347 121 225 59 29 0 chr1 31306640 31306674 -211357679 - U3 snRNA snRNA -182 35 1 1937 139 11 0 chr1 31306679 31306952 -211357401 - AluSx SINE Alu -36 276 1 479 215 11 0 chr1 31306964 31307057 -211357296 - MER33 DNA MER1_type -230 94 1 485 277 42 55 chr1 31307060 31307367 -211356986 + L1ME4a LINE L1 5768 6070 -51 659 311 17 40 chr1 31307475 31307774 -211356579 + MLT1H LTR MaLR 13 304 -245 1858 220 8 25 chr1 31307996 31308392 -211355961 + MSTD LTR MaLR 8 396 0 368 264 140 73 chr1 31308605 31308737 -211355616 - L1ME4a LINE L1 -1 6120 5998 237 33 0 0 chr1 31308737 31308767 -211355586 + (TG)n Simple_repeat Simple_repeat 2 31 0 368 264 140 73 chr1 31308767 31309126 -211355227 - L1ME4a LINE L1 -123 5998 5596 257 316 26 0 chr1 31309688 31309764 -211354589 + MIR SINE MIR 41 118 -90 1044 293 53 30 chr1 31309764 31310194 -211354159 + MLT1J2 LTR MaLR 1 440 -10 242 286 13 26 chr1 31310572 31310649 -211353704 + MIR SINE MIR 108 183 -79 483 314 23 6 chr1 31311554 31311726 -211352627 + L2 LINE L2 2904 3078 -194 1589 179 32 56 chr1 31311826 31312200 -211352153 - MLT1B LTR MaLR -22 368 4 427 339 145 21 chr1 31312383 31312769 -211351584 - MLT1K LTR MaLR -10 578 145 514 157 31 42 chr1 31312855 31313116 -211351237 + CT-rich Low_complexity Low_complexity 1 258 0 2324 71 14 3 chr1 31313169 31313452 -211350901 - AluY SINE Alu -25 286 1 807 249 49 45 chr1 31313618 31314096 -211350257 - MLT1F1 LTR MaLR 0 567 7 663 273 45 73 chr1 31314251 31314581 -211349772 - L2 LINE L2 0 3272 2952 2005 143 53 36 chr1 31314700 31314877 -211349476 - THE1B LTR MaLR 0 364 191 2287 119 0 3 chr1 31314877 31315189 -211349164 + AluSx SINE Alu 1 311 -1 2005 143 53 36 chr1 31315189 31315369 -211348984 - THE1B LTR MaLR -173 191 1 589 281 88 44 chr1 31315388 31315705 -211348648 + L2 LINE L2 2981 3311 -2 1475 202 73 3 chr1 31315765 31316106 -211348247 + MLT1A1 LTR MaLR 1 365 0 3223 114 55 18 chr1 31316983 31317491 -211346862 - MER1A DNA MER1_type 0 527 1 1136 256 105 19 chr1 31317967 31318432 -211345921 - LTR33 LTR ERVL -16 505 1 634 276 93 39 chr1 31318433 31318534 -211345819 + L2 LINE L2 2790 2884 -429 2719 99 41 7 chr1 31318534 31318948 -211345405 + MSTA LTR MaLR 1 428 0 634 276 93 39 chr1 31318948 31319326 -211345027 + L2 LINE L2 2884 3307 -6 433 256 267 5 chr1 31319353 31319548 -211344805 + MIR SINE MIR 17 262 0 186 227 0 0 chr1 31319737 31319781 -211344572 + L2 LINE L2 3014 3057 -215 501 62 0 0 chr1 31320210 31320275 -211344078 + (TCCC)n Simple_repeat Simple_repeat 3 67 0 345 297 36 0 chr1 31320442 31320553 -211343800 - L2 LINE L2 -253 3060 2946 737 248 218 37 chr1 31320656 31321120 -211343233 + MLT1H LTR MaLR 1 548 -1 559 312 78 9 chr1 31321176 31321407 -211342946 + MIR SINE MIR 3 249 -13 350 208 104 28 chr1 31321528 31321634 -211342719 - MER81 DNA DNA 0 114 1 585 270 22 11 chr1 31322783 31322961 -211341392 + MIR SINE MIR 40 219 -43 1905 209 51 53 chr1 31323472 31323508 -211340845 - MLT2B1 LTR ERVL -51 469 434 2265 126 0 0 chr1 31323508 31323810 -211340543 + AluSx SINE Alu 1 302 -10 1905 209 51 53 chr1 31323810 31324243 -211340110 - MLT2B1 LTR ERVL -86 434 1 2328 126 0 0 chr1 31324734 31325044 -211339309 - AluSg SINE Alu 0 310 1 502 225 23 58 chr1 31325353 31325611 -211338742 - L1MC5 LINE L1 -261 7700 7452 476 211 12 84 chr1 31325724 31325890 -211338463 - MER46C DNA MER2_type -182 156 3 303 313 20 27 chr1 31325893 31326043 -211338310 - MIR SINE MIR -112 150 2 837 297 71 28 chr1 31326316 31326710 -211337643 - MER115 DNA AcHobo -259 434 24 1073 258 73 23 chr1 31327495 31327879 -211336474 - MLT1H LTR MaLR -146 403 1 327 200 54 8 chr1 31327885 31327984 -211336369 - MIR SINE MIR -66 196 93 296 316 44 9 chr1 31328189 31328303 -211336050 - L2 LINE L2 -212 3060 2943 386 265 36 54 chr1 31328534 31328700 -211335653 + MLT1J2 LTR MaLR 260 422 -28 280 260 112 54 chr1 31328746 31328969 -211335384 - L2 LINE L2 -5 3308 3073 360 264 74 8 chr1 31329064 31329185 -211335168 - MIR SINE MIR -34 228 100 303 231 77 0 chr1 31329438 31329542 -211334811 + MIR SINE MIR 81 192 -70 507 248 41 0 chr1 31329698 31329819 -211334534 + L2 LINE L2 3187 3312 -1 262 254 64 36 chr1 31329824 31329934 -211334419 - MIR SINE MIR -63 145 33 214 231 0 0 chr1 31330590 31330629 -211333724 + polypyrimidine Low_complexity Low_complexity 1 39 0 242 298 124 16 chr1 31330629 31330750 -211333603 - L2 LINE L2 -5 3308 3175 1522 215 106 63 chr1 31330837 31331284 -211333069 + MLT2B2 LTR ERVL 2 473 -42 1210 23 23 6 chr1 31331284 31331455 -211332898 + (TCTA)n Simple_repeat Simple_repeat 2 175 0 1522 215 106 63 chr1 31331455 31331500 -211332853 + MLT2B2 LTR ERVL 473 515 0 400 204 85 42 chr1 31332639 31332787 -211331566 + MIR SINE MIR 3 155 -61 386 68 0 17 chr1 31333165 31333224 -211331129 + (ATG)n Simple_repeat Simple_repeat 3 60 0 314 192 141 13 chr1 31333671 31333749 -211330604 - MIR3 SINE MIR -43 165 78 869 225 99 40 chr1 31333750 31333833 -211330520 - L1M3c LINE L1 -4900 1241 1164 2267 111 6 19 chr1 31333833 31334149 -211330204 + AluSq SINE Alu 1 312 -1 869 225 99 40 chr1 31334149 31334255 -211330098 - L1M3c LINE L1 -4977 1164 1066 189 74 0 0 chr1 31334255 31334282 -211330071 + (TTG)n Simple_repeat Simple_repeat 1 27 0 869 225 99 40 chr1 31334282 31334393 -211329960 - L1M3c LINE L1 -5075 1066 922 253 301 40 15 chr1 31334414 31334675 -211329678 - L1M1 LINE L1 -4289 2093 1754 540 364 19 5 chr1 31334802 31335008 -211329345 - MIR SINE MIR -37 225 17 454 228 11 0 chr1 31335217 31335309 -211329044 - MIR SINE MIR -91 171 79 296 183 56 127 chr1 31335469 31335595 -211328758 + L2 LINE L2 2919 3035 -237 315 225 67 0 chr1 31336348 31336438 -211327915 - MIR SINE MIR -76 132 28 421 255 34 136 chr1 31337317 31337611 -211326742 + L2 LINE L2 3005 3268 -4 510 278 44 30 chr1 31337863 31338028 -211326325 + MIR SINE MIR 2 165 -56 694 200 84 13 chr1 31338425 31338580 -211325773 - L2 LINE L2 -257 3056 2891 523 263 26 19 chr1 31338805 31338961 -211325392 - MIR SINE MIR -55 207 51 538 314 26 16 chr1 31339099 31339290 -211325063 + MIR SINE MIR 29 221 -41 2294 117 7 0 chr1 31339308 31339616 -211324737 + AluSx SINE Alu 1 310 -2 278 323 101 17 chr1 31339735 31339946 -211324407 + MIR SINE MIR 20 250 -12 2304 106 0 3 chr1 31340726 31341019 -211323334 + AluSg SINE Alu 1 292 -18 289 244 77 26 chr1 31341113 31341191 -211323162 + L2 LINE L2 3232 3313 0 222 216 129 36 chr1 31341466 31341574 -211322779 + MIR SINE MIR 34 153 -109 264 320 0 0 chr1 31342679 31342692 -211321661 + MIR SINE MIR 106 118 -144 1569 216 10 3 chr1 31342692 31342998 -211321355 - AluJo SINE Alu -4 308 1 264 320 0 0 chr1 31342998 31343059 -211321294 + MIR SINE MIR 117 180 -82 500 271 99 17 chr1 31343199 31343380 -211320973 + MIR SINE MIR 38 233 -29 208 257 0 19 chr1 31343386 31343491 -211320862 + CT-rich Low_complexity Low_complexity 2 104 0 434 334 49 13 chr1 31343549 31343854 -211320499 - L1ME4a LINE L1 -178 5943 5628 321 291 35 35 chr1 31344101 31344273 -211320080 + L2 LINE L2 3092 3304 -9 290 85 0 21 chr1 31344298 31344345 -211320008 + (CA)n Simple_repeat Simple_repeat 2 47 0 357 309 235 10 chr1 31344479 31344683 -211319670 + MIR SINE MIR 1 250 -12 430 311 48 5 chr1 31345153 31345362 -211318991 - Charlie8 DNA MER1_type -2184 233 16 365 313 183 18 chr1 31345532 31345756 -211318597 + MIR SINE MIR 2 262 0 252 389 25 5 chr1 31345806 31346009 -211318344 + LTR16B LTR ERVL 256 462 -2 377 329 76 22 chr1 31346029 31346254 -211318099 + HERV16 LTR ERVL 10 246 -4750 251 329 0 0 chr1 31346446 31346522 -211317831 + HERV16 LTR ERVL 382 457 -4539 1172 301 172 11 chr1 31346653 31347027 -211317326 + HERV16 LTR ERVL 591 903 -4093 1559 197 114 39 chr1 31347027 31347439 -211316914 + LTR47B LTR ERVL 1 443 0 1172 301 172 11 chr1 31347439 31347698 -211316655 + HERV16 LTR ERVL 903 1326 -3670 1416 213 36 17 chr1 31347917 31348431 -211315922 + L1MD2 LINE L1 5783 6358 -1 1990 316 43 21 chr1 31348556 31349346 -211315007 + HERV16 LTR ERVL 1824 2630 -2366 249 232 254 21 chr1 31350045 31350187 -211314166 + MIR SINE MIR 70 244 -18 328 233 17 78 chr1 31350846 31350962 -211313391 + L3 LINE CR1 1392 1500 -77 660 305 31 13 chr1 31350965 31351191 -211313162 + MIR SINE MIR 6 235 -27 2648 115 3 3 chr1 31351644 31352008 -211312345 + THE1B LTR MaLR 1 364 0 602 279 136 85 chr1 31352509 31353001 -211311352 - LTR33A LTR ERVL -5 518 2 913 276 67 63 chr1 31353790 31354389 -211309964 - MLT2F LTR ERVL -60 603 3 310 257 191 33 chr1 31354557 31354709 -211309644 + MER5B DNA MER1_type 1 176 -2 180 219 0 0 chr1 31355555 31355587 -211308766 - L2 LINE L2 -16 3297 3266 180 182 61 0 chr1 31355559 31355592 -211308761 - L2 LINE L2 -20 3252 3218 369 123 0 0 chr1 31355602 31355667 -211308686 + (TG)n Simple_repeat Simple_repeat 2 66 0 419 278 85 90 chr1 31357401 31357836 -211306517 + L2 LINE L2 2836 3268 -4 378 268 66 73 chr1 31359482 31359799 -211304554 - L2 LINE L2 -447 2867 2553 376 265 84 13 chr1 31361514 31361711 -211302642 - MIR SINE MIR -48 214 3 349 282 101 24 chr1 31362151 31362360 -211301993 - LTR33A LTR ERVL 0 523 299 775 263 26 5 chr1 31362718 31362912 -211301441 + MIR SINE MIR 46 243 -19 388 259 27 9 chr1 31362924 31363036 -211301317 + MIR3 SINE MIR 87 200 -8 187 171 0 157 chr1 31363573 31363615 -211300738 + MIR SINE MIR 104 132 -130 1787 178 7 0 chr1 31363615 31363901 -211300452 + AluJo SINE Alu 1 288 -24 187 171 0 157 chr1 31363901 31363928 -211300425 + MIR SINE MIR 132 162 -100 536 292 43 105 chr1 31364000 31364552 -211299801 + MLT1K LTR MaLR 71 588 0 212 313 84 0 chr1 31364567 31364650 -211299703 + MIR SINE MIR 173 262 0 690 307 97 12 chr1 31364700 31365039 -211299314 + L2 LINE L2 2919 3286 -27 443 191 7 99 chr1 31365039 31365180 -211299173 - MLT1H LTR MaLR 0 549 422 205 297 46 11 chr1 31366125 31366266 -211298087 - MIR SINE MIR -63 199 51 218 247 56 34 chr1 31367163 31367252 -211297101 + L2 LINE L2 2954 3044 -228 209 256 0 0 chr1 31367903 31367946 -211296407 + (TGAG)n Simple_repeat Simple_repeat 1 43 0 363 242 242 0 chr1 31368794 31368918 -211295435 + MIR3 SINE MIR 30 183 -25 243 240 93 0 chr1 31368937 31369012 -211295341 + MIR SINE MIR 111 192 -70 296 350 71 41 chr1 31369442 31369639 -211294714 + MIR SINE MIR 1 203 -59 193 376 12 24 chr1 31370183 31370268 -211294085 - MIR SINE MIR -151 111 28 556 213 55 49 chr1 31370544 31370708 -211293645 - MIR3 SINE MIR -27 181 17 289 260 169 26 chr1 31371065 31371219 -211293134 - L1ME1 LINE L1 -4 6162 5987 219 344 52 31 chr1 31371299 31371395 -211292958 - L2 LINE L2 -218 3054 2957 193 320 40 0 chr1 31372003 31372078 -211292275 + MIR3 SINE MIR 85 162 -46 210 321 132 9 chr1 31372142 31372248 -211292105 + MIR SINE MIR 125 243 -19 544 289 27 7 chr1 31372314 31372463 -211291890 + MIR3 SINE MIR 42 193 -15 2525 213 86 29 chr1 31372752 31374278 -211290075 - L1ME1 LINE L1 -10 6154 4553 2508 239 30 17 chr1 31374306 31375148 -211289205 - L1ME1 LINE L1 -1736 4410 3558 1785 94 0 0 chr1 31375157 31375381 -211288972 + AluSc SINE Alu 86 309 0 404 291 8 8 chr1 31375886 31376003 -211288350 - L1ME1 LINE L1 -2471 3675 3559 1277 184 5 0 chr1 31376013 31376236 -211288117 + AluSc SINE Alu 86 309 0 3965 247 45 15 chr1 31376285 31377401 -211286952 - L1ME1 LINE L1 -2656 3490 2329 1977 124 41 72 chr1 31377401 31377788 -211286565 + THE1C LTR MaLR 1 375 0 3965 247 45 15 chr1 31377788 31377952 -211286401 - L1ME1 LINE L1 -3817 2329 2171 282 313 71 0 chr1 31378575 31378687 -211285666 - L2 LINE L2 -6 3266 3147 239 207 37 37 chr1 31378708 31378790 -211285563 - MIR SINE MIR -87 121 40 649 130 0 0 chr1 31378884 31378984 -211285369 - LTR12 LTR ERV1 0 714 615 348 176 33 22 chr1 31378986 31379077 -211285276 - LTR30 LTR ERV1 -79 643 552 800 188 56 126 chr1 31379077 31379501 -211284852 - LTR12 LTR ERV1 -430 1683 54 244 250 0 0 chr1 31379501 31379553 -211284800 - LTR30 LTR ERV1 -670 52 1 212 241 0 0 chr1 31379713 31379771 -211284582 + A-rich Low_complexity Low_complexity 2 59 0 425 261 49 0 chr1 31379968 31380110 -211284243 - MLT1L LTR MaLR -348 267 119 292 336 75 0 chr1 31380592 31380699 -211283654 + L2 LINE L2 3157 3271 -1 2027 123 44 0 chr1 31381591 31381908 -211282445 + LTR26 LTR ERV1 1 331 -272 3119 70 0 0 chr1 31381908 31382307 -211282046 + LTR66 LTR ERVL 1 399 -211 474 141 0 54 chr1 31382287 31382379 -211281974 + LTR66 LTR ERVL 314 400 -210 * 1528 81 47 111 chr1 31382381 31382678 -211281675 + LTR66 LTR ERVL 332 609 -1 1606 143 15 0 chr1 31382679 31382952 -211281401 + LTR26 LTR ERV1 327 603 0 518 302 71 32 chr1 31383037 31383289 -211281064 - MIR SINE MIR 0 262 1 * 1039 233 85 51 chr1 31383289 31383828 -211280525 - L2 LINE L2 -28 3285 2725 255 281 271 0 chr1 31383863 31383959 -211280394 + L2 LINE L2 3136 3257 -15 2131 249 77 41 chr1 31384019 31384287 -211280066 + L1ME1 LINE L1 5110 5367 -799 6678 133 101 12 chr1 31384287 31385480 -211278873 + HSMAR2 DNA Mariner 3 1302 0 2131 249 77 41 chr1 31385480 31386217 -211278136 + L1ME1 LINE L1 5367 6162 -4 486 254 86 43 chr1 31387352 31387584 -211276769 + MLT1K LTR MaLR 347 588 0 213 373 109 0 chr1 31387948 31388058 -211276295 - L2 LINE L2 0 3272 3151 301 269 126 18 chr1 31388931 31389098 -211275255 - HAL1 LINE L1 -22 2485 2301 393 209 139 57 chr1 31389258 31389416 -211274937 - MLT1K LTR MaLR -71 517 347 426 299 48 96 chr1 31389533 31390211 -211274142 - L2 LINE L2 -17 3255 2619 996 245 54 108 chr1 31390346 31391310 -211273043 + L1ME LINE L1 606 1767 -4494 4317 66 0 0 chr1 31391355 31391887 -211272466 - L1PA6 LINE L1 -9 6145 5614 7564 123 14 28 chr1 31391887 31393154 -211271199 + L1P LINE L1 560 1808 -4338 11092 24 7 1 chr1 31393154 31395014 -211269339 + L1PA5 LINE L1 4035 5899 -255 284 229 14 0 chr1 31395212 31395282 -211269071 - MLT2B3 LTR ERVL -483 71 1 263 338 13 0 chr1 31395374 31395451 -211268902 + MIR SINE MIR 48 125 -83 1966 245 67 57 chr1 31395892 31396565 -211267788 - MER115 DNA AcHobo -9 684 5 543 326 41 5 chr1 31397634 31397852 -211266501 - MIR SINE MIR -24 238 13 181 279 114 0 chr1 31397889 31397916 -211266437 - MIR SINE MIR -34 228 205 871 94 86 0 chr1 31397916 31398044 -211266309 - MER85 DNA T2_type 0 139 1 181 279 114 0 chr1 31398044 31398095 -211266258 - MIR SINE MIR -57 205 141 301 117 9 3 chr1 31400131 31400184 -211264169 + MLT2F LTR ERVL 343 663 0 629 193 16 152 chr1 31400212 31400456 -211263897 + MLT1D-int LTR MaLR 1161 1371 0 1857 164 132 78 chr1 31400456 31400933 -211263420 + MLT1D LTR MaLR 1 503 -2 427 149 122 0 chr1 31401455 31401529 -211262824 + MER63 DNA MER1_type 44 752 -310 440 135 122 0 chr1 31401842 31401916 -211262437 + MER63 DNA MER1_type 44 752 -84 294 306 139 7 chr1 31402699 31402843 -211261510 - MER5A DNA MER1_type 0 189 27 330 288 130 22 chr1 31402949 31403308 -211261045 + MLT1J2 LTR MaLR 37 395 -14 671 109 20 0 chr1 31403384 31403485 -211260868 - MER84 LTR ERVI 0 507 405 1373 87 0 5 chr1 31403620 31403804 -211260549 - L1PA10 LINE L1 -11 6157 5975 2792 88 17 33 chr1 31403805 31404114 -211260239 - MER84 LTR ERVI -90 417 115 2461 91 0 0 chr1 31404114 31404423 -211259930 - AluSc SINE Alu 0 309 1 2792 88 17 33 chr1 31404423 31404535 -211259818 - MER84 LTR ERVI -392 115 3 328 256 73 44 chr1 31405177 31405314 -211259039 + LTR16B LTR ERVL 322 462 -2 219 250 42 0 chr1 31405490 31405538 -211258815 + MIR SINE MIR 39 88 -174 225 0 0 0 chr1 31405564 31405589 -211258764 + (TG)n Simple_repeat Simple_repeat 1 25 0 270 171 0 0 chr1 31405657 31405727 -211258626 + (TG)n Simple_repeat Simple_repeat 1 70 0 539 222 206 21 chr1 31406032 31406226 -211258127 + MIR SINE MIR 20 249 -13 3439 163 243 16 chr1 31406535 31407413 -211256940 - MER52C LTR ERV1 0 1278 202 230 288 15 0 chr1 31407832 31407898 -211256455 - MER52A LTR ERV1 -1688 67 1 249 33 0 0 chr1 31408046 31408076 -211256277 + (CAT)n Simple_repeat Simple_repeat 2 31 0 279 79 0 0 chr1 31408081 31408119 -211256234 + (TCC)n Simple_repeat Simple_repeat 3 40 0 23 0 0 0 chr1 31408275 31408298 -211256055 + AT_rich Low_complexity Low_complexity 1 23 0 749 186 0 0 chr1 31408298 31408416 -211255937 - FLAM_C SINE Alu -15 118 1 203 244 26 26 chr1 31408419 31408497 -211255856 + (TCTCTG)n Simple_repeat Simple_repeat 3 80 0 477 0 0 0 chr1 31408499 31408552 -211255801 + (CA)n Simple_repeat Simple_repeat 1 53 0 366 260 92 14 chr1 31409113 31409267 -211255086 - MIR SINE MIR -61 201 38 203 211 54 167 chr1 31409316 31409520 -211254833 + L2 LINE L2 2969 3149 -164 272 297 29 101 chr1 31409878 31410016 -211254337 - MIR SINE MIR -117 145 18 254 269 239 36 chr1 31410684 31410851 -211253502 + MIR SINE MIR 43 243 -19 254 302 57 25 chr1 31410906 31411065 -211253288 - MIR SINE MIR -78 184 21 384 263 142 57 chr1 31411483 31411691 -211252662 - MIR SINE MIR -2 260 40 507 288 68 31 chr1 31412020 31412183 -211252170 + MIR SINE MIR 1 171 -37 224 250 29 15 chr1 31412241 31412309 -211252044 - MIR SINE MIR 0 262 194 240 298 33 58 chr1 31412515 31412636 -211251717 + MER5A DNA MER1_type 62 179 -10 2177 112 3 22 chr1 31412954 31413286 -211251067 - AluSc SINE Alu 0 309 1 396 273 59 47 chr1 31413288 31413541 -211250812 - L1M4c LINE L1 -4177 2469 2214 427 267 5 51 chr1 31413583 31413778 -211250575 - L1M4c LINE L1 -4547 2099 1914 462 168 92 60 chr1 31413778 31413963 -211250390 + Charlie1 DNA MER1_type 2526 2716 -45 1063 53 0 0 chr1 31413998 31414131 -211250222 - L1PA8 LINE L1 -4 6168 6036 1848 78 0 0 chr1 31414132 31414387 -211249966 + L1P LINE L1 4840 5094 -1052 * 5863 233 44 33 chr1 31414386 31416244 -211248109 - L1M4c LINE L1 -4758 1888 16 4683 188 18 44 chr1 31416285 31417100 -211247253 - L1MB8 LINE L1 0 6178 5343 2406 75 7 0 chr1 31417100 31417392 -211246961 - AluY SINE Alu -17 294 1 4683 188 18 44 chr1 31417392 31417522 -211246831 - L1MB8 LINE L1 -835 5343 5211 203 0 37 0 chr1 31417522 31417549 -211246804 + (TA)n Simple_repeat Simple_repeat 2 29 0 4683 188 18 44 chr1 31417549 31417989 -211246364 - L1MB8 LINE L1 -967 5211 4761 2686 118 3 0 chr1 31417989 31418352 -211246001 - THE1B LTR MaLR 0 364 1 4683 188 18 44 chr1 31418352 31419097 -211245256 - L1MB8 LINE L1 -1417 4761 4102 3510 282 65 15 chr1 31419094 31420230 -211244123 - L1M4b LINE L1 -5666 1193 1 * 1033 269 21 65 chr1 31420310 31420738 -211243615 + MLT1I LTR MaLR 1 409 0 204 247 79 34 chr1 31420830 31420919 -211243434 + L2 LINE L2 2587 2679 -635 294 292 34 0 chr1 31421039 31421128 -211243225 - L2 LINE L2 -19 3294 3203 319 298 89 0 chr1 31421736 31421860 -211242493 - MIR SINE MIR -114 148 14 * 458 292 77 29 chr1 31421849 31422058 -211242295 - L3 LINE CR1 -79 1498 1280 5218 195 18 33 chr1 31422407 31422653 -211241700 + L1MB3 LINE L1 4013 4261 -1922 306 50 0 0 chr1 31422653 31422693 -211241660 + (CA)n Simple_repeat Simple_repeat 1 40 0 5218 195 18 33 chr1 31422693 31424522 -211239831 + L1MB3 LINE L1 4261 6044 -139 1549 224 30 8 chr1 31424529 31424890 -211239463 + MLT1A2 LTR MaLR 6 374 0 820 76 69 8 chr1 31424890 31425021 -211239332 + L1MB3 LINE L1 6041 6179 -4 207 294 44 15 chr1 31425070 31425138 -211239215 - MIR3 SINE MIR -7 201 132 351 292 164 18 chr1 31425661 31425832 -211238521 - MIR SINE MIR -34 228 33 398 286 11 51 chr1 31425877 31426055 -211238298 + MER117 DNA MER1_type 11 181 -16 807 269 144 58 chr1 31427668 31428549 -211235804 + HAL1b LINE L1 380 1336 -12 721 60 0 10 chr1 31428845 31428945 -211235408 + LOR1a LTR ERV1 1 99 -398 1075 156 0 0 chr1 31428945 31429105 -211235248 - AluSg/x SINE Alu 0 312 153 2327 156 23 0 chr1 31429107 31429499 -211234854 + LOR1a LTR ERV1 95 495 -2 3314 162 29 2 chr1 31429529 31430151 -211234202 - L1MA4 LINE L1 0 6300 5662 534 209 43 90 chr1 31431094 31431282 -211233071 + MIR SINE MIR 57 235 -27 424 289 0 63 chr1 31432060 31432219 -211232134 - MIR SINE MIR -69 193 45 185 143 0 0 chr1 31432268 31432296 -211232057 - L2 LINE L2 -217 3055 3028 224 311 98 16 chr1 31432555 31432677 -211231676 - MIR SINE MIR -10 252 121 200 33 0 33 chr1 31432765 31432795 -211231558 + (TCCCC)n Simple_repeat Simple_repeat 3 31 0 344 294 32 8 chr1 31432899 31433025 -211231328 + MIR3 SINE MIR 3 131 -77 252 360 10 0 chr1 31433374 31433474 -211230879 - MIR3 SINE MIR -3 205 105 238 261 92 31 chr1 31433703 31433833 -211230520 - MLT1K LTR MaLR -247 341 204 337 270 44 33 chr1 31433853 31433986 -211230367 - MER5A DNA MER1_type -9 169 49 325 263 18 35 chr1 31434022 31434136 -211230217 + MIR3 SINE MIR 74 185 -23 217 129 0 0 chr1 31434170 31434201 -211230152 - MIR SINE MIR -66 142 112 283 287 23 0 chr1 31434791 31434878 -211229475 + MIR SINE MIR 167 255 -7 254 333 67 0 chr1 31434962 31435052 -211229301 - MIR SINE MIR -148 114 19 409 289 138 67 chr1 31435401 31435699 -211228654 + L2 LINE L2 2855 3173 -99 2192 118 52 34 chr1 31435745 31436127 -211228226 - HERVK22 LTR ERVK -6448 389 1 3424 78 27 5 chr1 31436127 31436575 -211227778 - LTR22A LTR ERVK 0 458 1 195 129 0 0 chr1 31436576 31436607 -211227746 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 * 196 284 34 23 chr1 31436594 31436682 -211227671 - L2 LINE L2 0 3272 3184 285 320 49 17 chr1 31436977 31437233 -211227120 - L2 LINE L2 -449 2865 2600 368 186 0 0 chr1 31437562 31437632 -211226721 + MIR SINE MIR 81 150 -58 1668 196 33 84 chr1 31438102 31438555 -211225798 - MER63B DNA MER1_type -6 430 1 7890 197 61 27 chr1 31438849 31440547 -211223806 + MER52A LTR ERV1 1 1755 0 409 244 0 0 chr1 31440617 31440699 -211223654 - MER81 DNA DNA -32 82 1 212 315 39 31 chr1 31441834 31441961 -211222392 + L2 LINE L2 3177 3304 -9 377 185 62 0 chr1 31442000 31442081 -211222272 - MIR SINE MIR -98 164 79 499 214 38 9 chr1 31442497 31442657 -211221696 - MIR SINE MIR -62 146 30 200 306 0 0 chr1 31442877 31442939 -211221414 - MIR3 SINE MIR -3 205 144 501 272 78 61 chr1 31443383 31443632 -211220721 + MIR SINE MIR 5 256 -6 1554 163 8 12 chr1 31444045 31444296 -211220057 - AluSx SINE Alu -60 252 3 437 252 89 57 chr1 31444546 31444792 -211219561 + MIR SINE MIR 2 255 -7 503 342 48 0 chr1 31444828 31445056 -211219297 + MIR SINE MIR 21 259 -3 408 97 0 0 chr1 31445225 31445287 -211219066 + (CA)n Simple_repeat Simple_repeat 1 62 0 180 281 61 12 chr1 31445737 31445819 -211218534 - MIR3 SINE MIR -30 178 93 * 344 214 111 40 chr1 31445812 31445938 -211218415 + L2 LINE L2 3179 3313 0 630 318 40 8 chr1 31446273 31446525 -211217828 + MIR SINE MIR 3 262 0 247 268 31 31 chr1 31447133 31447230 -211217123 + GA-rich Low_complexity Low_complexity 1 97 0 1732 152 92 0 chr1 31447230 31447546 -211216807 - MSTB LTR MaLR -81 345 1 507 317 85 50 chr1 31447554 31447873 -211216480 + MLT1K LTR MaLR 257 586 -2 2118 92 11 21 chr1 31449431 31449755 -211214598 - AluSx SINE Alu 0 321 1 2662 251 55 13 chr1 31449942 31450654 -211213699 + L1MEc LINE L1 202 943 -5620 260 341 23 17 chr1 31450655 31450831 -211213522 + L1MEc LINE L1 1274 1450 -4934 3185 240 32 21 chr1 31450946 31451373 -211212980 + L1M4 LINE L1 2 444 -6098 294 29 0 0 chr1 31451373 31451408 -211212945 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3185 240 32 21 chr1 31451408 31451801 -211212552 + L1M4 LINE L1 444 831 -5711 1241 225 9 23 chr1 31451847 31452194 -211212159 + L1M4 LINE L1 1215 1556 -4986 238 225 67 22 chr1 31452201 31452290 -211212063 - L1MEc LINE L1 -4429 1967 1875 1644 244 47 4 chr1 31452379 31452874 -211211479 + L1M4 LINE L1 1569 2084 -4562 1049 222 24 0 chr1 31453259 31453507 -211210846 + L1MC4 LINE L1 5585 5838 -2204 992 231 75 14 chr1 31453544 31453890 -211210463 + L1M4 LINE L1 2304 2670 -4155 238 353 82 0 chr1 31453894 31454016 -211210337 - MIR SINE MIR -115 147 16 545 270 7 0 chr1 31454105 31454242 -211210111 - MIR3 SINE MIR -22 186 49 355 299 121 0 chr1 31454560 31454717 -211209636 - MIR3 SINE MIR -21 187 12 504 280 63 40 chr1 31454988 31455188 -211209165 + LTR33 LTR ERVL 24 226 -309 325 283 64 43 chr1 31455267 31455454 -211208899 + L2 LINE L2 3079 3269 -44 207 0 0 0 chr1 31455679 31455702 -211208651 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 350 290 69 0 chr1 31455704 31455835 -211208518 - L2 LINE L2 -10 3262 3123 435 314 30 96 chr1 31455957 31456397 -211207956 - MLT1K LTR MaLR -53 535 125 270 270 100 10 chr1 31456551 31456651 -211207702 - MIR SINE MIR -104 158 50 454 260 20 27 chr1 31457216 31457362 -211206991 - MIR3 SINE MIR -22 186 42 413 292 71 7 chr1 31457367 31457521 -211206832 - MIR SINE MIR -20 242 79 246 337 53 0 chr1 31457645 31457740 -211206613 + LTR33A LTR ERVL 61 160 -363 323 285 101 14 chr1 31457899 31457975 -211206378 + LTR33A LTR ERVL 299 367 -156 2505 93 0 0 chr1 31457975 31458285 -211206068 - AluSq SINE Alu -3 310 1 323 285 101 14 chr1 31458285 31458415 -211205938 + LTR33A LTR ERVL 367 523 0 445 345 47 12 chr1 31458699 31458954 -211205399 + ERVL LTR ERVL 320 583 -5181 445 211 2 4 chr1 31459210 31459312 -211205041 + ERVL LTR ERVL 3246 3327 -2327 567 148 0 101 chr1 31459312 31459461 -211204892 + LTR36 LTR ERV1 1 134 -477 954 233 125 17 chr1 31459544 31459832 -211204521 + LTR36 LTR ERV1 293 611 0 1192 211 83 40 chr1 31460097 31460495 -211203858 - MLT1C LTR MaLR 0 467 53 535 317 27 0 chr1 31460596 31460782 -211203571 + ERVL LTR ERVL 3770 3960 -1804 481 276 16 0 chr1 31461478 31461601 -211202752 + MIR3 SINE MIR 58 182 -26 526 282 46 11 chr1 31461656 31461830 -211202523 + MIR SINE MIR 83 262 0 206 279 0 49 chr1 31462869 31462991 -211201362 + (CACCC)n Simple_repeat Simple_repeat 2 117 0 * 415 224 16 38 chr1 31462918 31463185 -211201168 + CT-rich Low_complexity Low_complexity 1 261 0 203 200 32 53 chr1 31463139 31463234 -211201119 + (CACTC)n Simple_repeat Simple_repeat 3 95 0 * 191 125 25 0 chr1 31463249 31463289 -211201064 + (CACTC)n Simple_repeat Simple_repeat 3 43 0 562 236 65 63 chr1 31464104 31464488 -211199865 + MLT1L LTR MaLR 137 586 -3 278 299 23 0 chr1 31464493 31464580 -211199773 + MIR SINE MIR 55 143 -119 210 318 34 11 chr1 31464599 31464687 -211199666 + L2 LINE L2 3161 3250 -22 * 844 316 16 0 chr1 31464655 31464908 -211199445 - MIR SINE MIR 0 262 6 233 208 19 19 chr1 31464910 31464963 -211199390 + L2 LINE L2 3261 3313 0 217 239 0 0 chr1 31465769 31465815 -211198538 + L2 LINE L2 3267 3312 -1 307 260 27 0 chr1 31466415 31466488 -211197865 + MIR3 SINE MIR 119 193 -15 676 278 85 5 chr1 31466682 31466894 -211197459 + MIR SINE MIR 31 259 -3 265 269 42 93 chr1 31467235 31467428 -211196925 - L2 LINE L2 -21 3292 3110 211 350 0 0 chr1 31467474 31467554 -211196799 + (TG)n Simple_repeat Simple_repeat 1 80 0 195 42 0 0 chr1 31467574 31467598 -211196755 + (TG)n Simple_repeat Simple_repeat 2 25 0 271 284 164 9 chr1 31468078 31468194 -211196159 + L2 LINE L2 3127 3260 -12 395 200 105 0 chr1 31468737 31468832 -211195521 + MIR SINE MIR 85 189 -73 243 143 39 26 chr1 31468843 31468920 -211195433 + (TAA)n Simple_repeat Simple_repeat 3 80 0 209 277 178 50 chr1 31469000 31469101 -211195252 - MIR SINE MIR -70 192 79 298 329 77 51 chr1 31469140 31469374 -211194979 - MIR SINE MIR -10 252 13 457 313 55 10 chr1 31469393 31469594 -211194759 - L2 LINE L2 -2 3311 3102 246 287 0 70 chr1 31469989 31470118 -211194235 - L2 LINE L2 -213 3059 2940 460 286 64 0 chr1 31470201 31470341 -211194012 + MIR SINE MIR 107 255 -7 270 332 77 41 chr1 31470382 31470578 -211193775 + MIR SINE MIR 22 224 -38 345 294 39 0 chr1 31470834 31470936 -211193417 - MIR SINE MIR -77 185 80 229 261 22 87 chr1 31471238 31471330 -211193023 - MIR SINE MIR -62 146 61 1851 129 137 51 chr1 31471442 31471591 -211192762 + MSTA LTR MaLR 1 136 -292 3286 159 14 77 chr1 31471591 31472322 -211192031 + LTR8 LTR ERV1 5 689 -2 1851 129 137 51 chr1 31472322 31472566 -211191787 + MSTA LTR MaLR 136 428 0 3144 161 16 0 chr1 31472566 31473114 -211191239 + MSTA-int LTR MaLR 1 557 -1094 * 4875 143 18 9 chr1 31473111 31473876 -211190477 + MSTA-int LTR MaLR 809 1580 0 1850 168 134 11 chr1 31473876 31474257 -211190096 + MSTA LTR MaLR 1 428 0 183 250 171 0 chr1 31474277 31474353 -211190000 + L2 LINE L2 3224 3312 -1 251 361 82 0 chr1 31474369 31474491 -211189862 - MIR SINE MIR -55 207 76 419 325 91 22 chr1 31475176 31475407 -211188946 + MIR SINE MIR 1 247 -15 2757 236 116 27 chr1 31475716 31476493 -211187860 + L1M4 LINE L1 2881 3771 -2375 2424 97 3 3 chr1 31476493 31476803 -211187550 - AluY SINE Alu -1 310 1 2757 236 116 27 chr1 31476803 31477047 -211187306 + L1M4 LINE L1 3771 3992 -2154 213 162 0 0 chr1 31477869 31477906 -211186447 - MIR SINE MIR -114 148 112 320 245 41 10 chr1 31478024 31478122 -211186231 + MIR SINE MIR 150 250 -12 313 321 91 45 chr1 31478313 31478534 -211185819 + MIR SINE MIR 26 256 -6 246 315 22 22 chr1 31478946 31479038 -211185315 + L2 LINE L2 3141 3232 -40 213 343 20 10 chr1 31479134 31479236 -211185117 + MIR3 SINE MIR 78 180 -28 352 308 47 71 chr1 31482109 31482557 -211181796 - L2 LINE L2 0 3272 2836 189 0 0 0 chr1 31482726 31482747 -211181606 + (TC)n Simple_repeat Simple_repeat 1 21 0 264 314 0 35 chr1 31482795 31482881 -211181472 + C-rich Low_complexity Low_complexity 1 83 0 198 191 0 0 chr1 31482885 31482927 -211181426 + CT-rich Low_complexity Low_complexity 3 44 0 263 56 0 0 chr1 31483408 31483444 -211180909 + MADE1 DNA Mariner 45 80 0 303 286 66 6 chr1 31483652 31483834 -211180519 - L2 LINE L2 -227 3045 2853 180 77 0 0 chr1 31483949 31483975 -211180378 + (TTA)n Simple_repeat Simple_repeat 3 28 0 647 259 129 0 chr1 31483979 31484149 -211180204 - MIR SINE MIR -7 255 64 233 253 73 27 chr1 31485130 31485280 -211179073 + L2 LINE L2 2836 2992 -280 2341 97 0 10 chr1 31485355 31485655 -211178698 - AluSx SINE Alu -15 297 1 326 292 160 46 chr1 31486411 31487045 -211177308 - L2 LINE L2 -2 3270 2562 237 227 11 80 chr1 31487068 31487156 -211177197 - L2 LINE L2 -853 2461 2379 737 325 78 18 chr1 31488160 31488557 -211175796 - L2 LINE L2 0 3313 2893 956 249 126 28 chr1 31488872 31489262 -211175091 + L2 LINE L2 2886 3313 0 1193 95 23 19 chr1 31489437 31489644 -211174709 - LTR10A LTR ERV1 -21 612 362 258 300 35 4 chr1 31489663 31489871 -211174482 + L2 LINE L2 2370 2660 -654 1860 137 29 73 chr1 31489901 31490282 -211174071 - LTR10A LTR ERV1 -245 364 1 180 289 111 22 chr1 31491403 31491493 -211172860 + MIR SINE MIR 42 139 -69 210 247 214 0 chr1 31491987 31492076 -211172277 - MIR SINE MIR -63 145 38 280 328 90 8 chr1 31492199 31492321 -211172032 - MIR SINE MIR -110 152 21 381 277 188 27 chr1 31492859 31493115 -211171238 + MLT1K LTR MaLR 39 335 -253 510 17 0 0 chr1 31493181 31493240 -211171113 + (CA)n Simple_repeat Simple_repeat 2 60 0 195 188 0 0 chr1 31493340 31493388 -211170965 + G-rich Low_complexity Low_complexity 3 50 0 262 284 27 0 chr1 31493660 31493734 -211170619 - L2 LINE L2 -559 2755 2680 721 345 53 17 chr1 31493740 31494097 -211170256 - MER115 DNA AcHobo -5 688 319 2461 90 27 33 chr1 31494789 31495155 -211169198 - THE1B LTR MaLR 0 364 1 1516 206 40 20 chr1 31495155 31495504 -211168849 - MLT1A2 LTR MaLR -16 358 3 716 275 24 14 chr1 31496316 31496527 -211167826 - MIR SINE MIR -43 219 7 315 200 18 73 chr1 31496532 31496642 -211167711 - L3 LINE CR1 -77 1500 1397 453 268 70 6 chr1 31497392 31497549 -211166804 - MIR SINE MIR -79 183 17 285 231 28 83 chr1 31497572 31497680 -211166673 + MER5A DNA MER1_type 88 189 0 225 280 112 0 chr1 31497687 31497794 -211166559 - MIR SINE MIR -55 153 35 522 330 81 4 chr1 31499334 31499607 -211164746 + L1ME4a LINE L1 5629 5922 -199 288 77 0 0 chr1 31499641 31499680 -211164673 + (ATG)n Simple_repeat Simple_repeat 2 40 0 529 242 98 61 chr1 31499693 31499926 -211164427 - MIR SINE MIR -13 249 1 414 0 0 0 chr1 31501567 31501613 -211162740 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 513 303 76 10 chr1 31501617 31501815 -211162538 - L2 LINE L2 -25 3288 3078 277 302 15 38 chr1 31502363 31502505 -211161848 - MIR SINE MIR -73 135 17 309 315 22 12 chr1 31502598 31502764 -211161589 - MIR SINE MIR -18 244 76 575 301 27 16 chr1 31502951 31503134 -211161219 - MIR SINE MIR -50 212 28 460 262 21 14 chr1 31503270 31503411 -211160942 + MIR SINE MIR 51 192 -70 303 369 37 28 chr1 31503421 31503635 -211160718 + L2 LINE L2 3098 3313 0 438 185 0 0 chr1 31504485 31504577 -211159776 + L2 LINE L2 2891 2982 -331 185 298 18 0 chr1 31504599 31504656 -211159697 + L3 LINE CR1 1517 1574 -3 346 293 23 38 chr1 31505296 31505429 -211158924 - MIR SINE MIR -108 154 24 1612 99 9 9 chr1 31506297 31506530 -211157823 + L1PB1 LINE L1 5919 6151 0 185 0 40 0 chr1 31506562 31506587 -211157766 + (CAA)n Simple_repeat Simple_repeat 2 27 0 607 255 158 60 chr1 31506650 31507030 -211157323 - MLT1H LTR MaLR 0 549 133 557 204 76 0 chr1 31507219 31507239 -211157114 - L1MA10 LINE L1 -3 6331 6312 2537 245 60 47 chr1 31507239 31508173 -211156180 - L1ME1 LINE L1 -21 6145 5199 230 56 28 0 chr1 31508287 31508323 -211156030 + (TAA)n Simple_repeat Simple_repeat 2 38 0 504 296 19 0 chr1 31509501 31509660 -211154693 + MIR SINE MIR 94 255 -7 2056 71 0 4 chr1 31509741 31510010 -211154343 - AluY SINE Alu 0 311 44 673 330 66 30 chr1 31510369 31510796 -211153557 - L2 LINE L2 -5 3267 2826 2232 101 0 0 chr1 31511568 31511864 -211152489 + AluSg1 SINE Alu 1 296 -13 1796 173 3 3 chr1 31512051 31512363 -211151990 - AluJo SINE Alu 0 312 1 1344 194 12 98 chr1 31512541 31512771 -211151582 + MLT1A1 LTR MaLR 1 101 -264 2118 126 7 0 chr1 31512771 31513080 -211151273 - AluSx SINE Alu -1 311 1 1344 194 12 98 chr1 31513080 31513324 -211151029 + MLT1A1 LTR MaLR 101 365 0 587 309 21 0 chr1 31513414 31513608 -211150745 + MIR3 SINE MIR 11 208 0 537 274 56 28 chr1 31514122 31514301 -211150052 - MIR SINE MIR -21 241 58 949 299 47 57 chr1 31514569 31514991 -211149362 + MLT1K LTR MaLR 13 430 -158 217 282 77 13 chr1 31515015 31515093 -211149260 + L2 LINE L2 3193 3275 -38 534 239 0 36 chr1 31515096 31515234 -211149119 + MLT1K LTR MaLR 445 577 -11 210 346 0 12 chr1 31515236 31515317 -211149036 + L2 LINE L2 3192 3271 -1 380 291 140 1 chr1 31515705 31515729 -211148624 + MIR SINE MIR 43 62 -200 365 119 0 0 chr1 31515729 31515788 -211148565 - L1MA4A LINE L1 -5 6298 6240 380 291 140 1 chr1 31515788 31515935 -211148418 + MIR SINE MIR 62 236 -26 322 282 60 27 chr1 31516387 31516536 -211147817 - MIR SINE MIR -52 156 3 349 169 0 0 chr1 31517476 31517535 -211146818 - MER96 DNA MER1_type? -113 62 4 514 342 104 17 chr1 31517592 31518287 -211146066 - L2 LINE L2 0 3313 2556 278 323 46 15 chr1 31518309 31518439 -211145914 - L2 LINE L2 0 3313 3180 205 222 111 14 chr1 31518813 31518885 -211145468 - MIR SINE MIR -116 146 68 248 305 8 62 chr1 31519012 31519140 -211145213 - MIR SINE MIR -3 259 139 460 292 172 12 chr1 31519336 31519586 -211144767 - MLT1H LTR MaLR -255 294 5 334 299 0 10 chr1 31519586 31519683 -211144670 - MIR SINE MIR -68 140 45 228 163 0 0 chr1 31519949 31519992 -211144361 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 290 198 110 33 chr1 31520049 31520140 -211144213 + L2 LINE L2 2986 3083 -189 181 366 37 30 chr1 31520294 31520428 -211143925 + L2 LINE L2 3137 3271 -1 229 182 0 36 chr1 31520430 31520485 -211143868 + GA-rich Low_complexity Low_complexity 1 53 0 210 182 182 0 chr1 31521104 31521159 -211143194 + MER5A DNA MER1_type 30 94 -95 409 289 37 15 chr1 31521391 31521526 -211142827 + MIR SINE MIR 71 208 -54 398 330 48 24 chr1 31521677 31521886 -211142467 + L2 LINE L2 3100 3313 0 591 251 126 52 chr1 31521904 31522287 -211142066 - MLT1J2 LTR MaLR -1 449 75 232 297 198 0 chr1 31522804 31522915 -211141438 + L2 LINE L2 3138 3270 -2 1854 243 80 21 chr1 31523072 31523557 -211140796 + MLT1E LTR MaLR 80 593 0 286 273 189 8 chr1 31523557 31523689 -211140664 - MIR SINE MIR -67 195 40 202 348 22 22 chr1 31524343 31524435 -211139918 + MIR3 SINE MIR 65 156 -52 503 332 126 0 chr1 31524875 31525065 -211139288 - MIR SINE MIR -1 261 48 2291 139 34 0 chr1 31525219 31525571 -211138782 + THE1B LTR MaLR 1 364 0 533 284 97 45 chr1 31526431 31526741 -211137612 + MER115 DNA AcHobo 1 326 -367 2339 129 117 8 chr1 31527397 31527783 -211136570 - MSTA LTR MaLR 0 428 1 786 209 88 38 chr1 31528153 31528416 -211135937 + LTR33 LTR ERVL 10 285 -236 293 305 105 15 chr1 31528459 31528659 -211135694 - L2 LINE L2 -535 2779 2562 464 230 46 82 chr1 31529117 31529312 -211135041 + MIR SINE MIR 34 227 -35 364 324 95 46 chr1 31530305 31530672 -211133681 - L2 LINE L2 -1 3312 2928 201 280 16 80 chr1 31530684 31530809 -211133544 - L2 LINE L2 -177 3095 2979 282 330 171 6 chr1 31531964 31532140 -211132213 - MIR SINE MIR -50 212 8 193 371 64 21 chr1 31532240 31532380 -211131973 + MIR SINE MIR 113 258 -4 698 237 0 68 chr1 31532715 31532905 -211131448 - MLT1J1 LTR MaLR -262 184 8 239 342 26 0 chr1 31532911 31532987 -211131366 - MIR SINE MIR -90 118 41 399 271 126 25 chr1 31533547 31533746 -211130607 + L1ME LINE L1 5596 5814 -307 401 237 62 10 chr1 31534043 31534171 -211130182 - MLT1H LTR MaLR 0 549 410 463 283 73 43 chr1 31534195 31534245 -211130108 - MLT1H LTR MaLR -287 262 215 2244 81 0 26 chr1 31534245 31534554 -211129799 - AluY SINE Alu -5 306 6 463 283 73 43 chr1 31534554 31534736 -211129617 - MLT1H LTR MaLR -334 215 23 231 367 9 0 chr1 31535112 31535221 -211129132 - L1MC/D LINE L1 -2002 5806 5697 563 310 34 17 chr1 31535248 31535487 -211128866 - MIR SINE MIR -17 245 3 418 305 64 0 chr1 31535488 31535629 -211128724 - L1MC/D LINE L1 -441 5680 5531 408 362 111 15 chr1 31535641 31536122 -211128231 - L2 LINE L2 -27 3286 2751 1724 231 21 56 chr1 31536134 31536210 -211128143 - MER69 DNA AcHobo -5 2521 2444 2435 71 0 0 chr1 31536210 31536518 -211127835 + AluY SINE Alu 1 308 -3 1724 231 21 56 chr1 31536518 31537046 -211127307 - MER69 DNA AcHobo -82 2444 1938 371 272 26 0 chr1 31537028 31537142 -211127211 - MER69 DNA AcHobo -1109 117 1 * 3378 164 46 0 chr1 31537953 31538537 -211125816 + LTR31 LTR ERV1 9 619 0 723 171 0 0 chr1 31538881 31538992 -211125361 - FLAM_C SINE Alu -30 113 3 403 184 35 0 chr1 31538992 31539079 -211125274 - L1M4 LINE L1 -1384 4762 4673 769 165 0 79 chr1 31539114 31539278 -211125075 + MLT1C LTR MaLR 1 151 -239 2624 92 0 40 chr1 31539288 31539658 -211124695 - THE1A LTR MaLR 0 355 1 11912 95 1 0 chr1 31539658 31541216 -211123137 - THE1A-int LTR MaLR 0 1580 21 2487 122 3 0 chr1 31541221 31541575 -211122778 - THE1A LTR MaLR 0 355 1 2401 137 70 10 chr1 31541582 31541984 -211122369 - MSTB LTR MaLR 0 426 1 1395 214 54 0 chr1 31541984 31542279 -211122074 + MLT1C LTR MaLR 157 467 0 1394 165 23 3 chr1 31542288 31542555 -211121798 - MLT1A1 LTR MaLR -4 361 1 657 287 37 19 chr1 31542707 31543028 -211121325 - L2 LINE L2 -583 2731 2405 235 191 16 48 chr1 31543043 31543106 -211121247 - LTR15 LTR ERV1 -99 394 334 2118 112 11 3 chr1 31544785 31545071 -211119282 + AluSx SINE Alu 1 288 -24 425 260 0 19 chr1 31545932 31546036 -211118317 - MIR3 SINE MIR -15 193 92 458 245 134 53 chr1 31546091 31546451 -211117902 - MLT1H LTR MaLR -16 533 42 431 297 66 19 chr1 31546672 31546884 -211117469 + HAL1b LINE L1 566 787 -561 2442 78 0 0 chr1 31547121 31547417 -211116936 + AluY SINE Alu 1 296 -15 2321 147 65 5 chr1 31547770 31548172 -211116181 + MSTA LTR MaLR 1 426 -2 9635 171 19 4 chr1 31548174 31549796 -211114557 + MSTA-int LTR MaLR 1 1645 -6 682 110 31 1 chr1 31549802 31549912 -211114441 + MSTA LTR MaLR 1 113 -313 250 214 0 0 chr1 31549922 31549978 -211114375 + L1ME LINE L1 5382 5437 -684 1621 133 105 0 chr1 31550024 31550309 -211114044 + MSTA LTR MaLR 114 428 0 5263 118 16 9 chr1 31550728 31551502 -211112851 - MER4E LTR ERV1 0 779 1 8281 94 15 1 chr1 31551967 31553904 -211110449 - L1PA7 LINE L1 -5 6149 4196 219 36 0 0 chr1 31554070 31554098 -211110255 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 236 337 94 33 chr1 31554379 31554718 -211109635 + L1ME LINE L1 5445 5806 -315 291 271 114 7 chr1 31555400 31555540 -211108813 - MIR SINE MIR -44 218 64 820 278 137 37 chr1 31555576 31556549 -211107804 + L1MD2 LINE L1 4400 5452 -712 375 305 44 1 chr1 31556550 31556678 -211107675 + L1MD2 LINE L1 5524 5656 -522 2192 132 0 0 chr1 31556794 31557090 -211107263 + AluSx SINE Alu 1 296 -16 475 260 104 6 chr1 31557208 31557381 -211106972 + MIR SINE MIR 33 222 -40 779 248 57 76 chr1 31557390 31557470 -211106883 + L1MD2 LINE L1 6050 6130 -229 215 61 30 0 chr1 31557470 31557503 -211106850 + (CA)n Simple_repeat Simple_repeat 1 34 0 779 248 57 76 chr1 31557503 31557736 -211106617 + L1MD2 LINE L1 6130 6357 -2 602 235 41 6 chr1 31557877 31558047 -211106306 - MIR SINE MIR -86 176 1 23 78 0 0 chr1 31558076 31558127 -211106226 + AT_rich Low_complexity Low_complexity 1 51 0 320 204 11 23 chr1 31558789 31558877 -211105476 + LTR16A LTR ERVL 326 412 -38 433 281 0 37 chr1 31559939 31560074 -211104279 + L2 LINE L2 3142 3271 -1 399 258 116 11 chr1 31560086 31560276 -211104077 - MIR SINE MIR -14 248 39 190 383 21 0 chr1 31561437 31561531 -211102822 - L2 LINE L2 -529 2785 2690 2088 115 30 0 chr1 31562049 31562345 -211102008 - AluSx SINE Alu -7 305 1 265 267 27 0 chr1 31562348 31562423 -211101930 - MIR SINE MIR -81 181 105 220 308 19 28 chr1 31562439 31562546 -211101807 - MIR3 SINE MIR -10 198 93 208 250 69 28 chr1 31562586 31562658 -211101695 - L2 LINE L2 -56 3257 3183 5088 231 49 49 chr1 31562902 31564017 -211100336 - L1M4 LINE L1 -1216 4930 3816 2201 117 3 19 chr1 31564017 31564333 -211100020 - AluSp SINE Alu -2 311 1 5088 231 49 49 chr1 31564333 31564473 -211099880 - L1M4 LINE L1 -2330 3816 3677 1140 173 48 122 chr1 31564473 31564867 -211099486 - MLT1A1 LTR MaLR 0 365 1 5088 231 49 49 chr1 31564867 31565024 -211099329 - L1M4 LINE L1 -2469 3677 3521 1853 149 19 23 chr1 31565024 31565332 -211099021 - AluJo SINE Alu -5 307 1 5088 231 49 49 chr1 31565332 31565591 -211098762 - L1M4 LINE L1 -2624 3522 3257 634 174 30 8 chr1 31565788 31565920 -211098433 + MLT1C LTR MaLR 324 458 -9 198 300 17 17 chr1 31566567 31566627 -211097726 - MIR SINE MIR -61 147 88 313 310 59 15 chr1 31566649 31566852 -211097501 + MIR SINE MIR 32 243 -19 798 301 27 49 chr1 31567018 31567292 -211097061 + MERVL LTR ERVL 4903 5167 -318 2026 154 7 0 chr1 31567292 31567598 -211096755 - AluSx SINE Alu -2 310 3 798 301 27 49 chr1 31567598 31567729 -211096624 + MERVL LTR ERVL 5167 5299 -186 277 294 9 28 chr1 31567940 31568049 -211096304 + MERVL LTR ERVL 5581 5687 -77 337 237 0 11 chr1 31568130 31568223 -211096130 + LTR41 LTR ERVL 1 92 -681 378 226 104 0 chr1 31568511 31568626 -211095727 - MIR SINE MIR -83 179 53 224 275 14 14 chr1 31568797 31568866 -211095487 - L2 LINE L2 -1 3312 3244 21 36 0 0 chr1 31568950 31568978 -211095375 + AT_rich Low_complexity Low_complexity 1 28 0 4058 274 71 35 chr1 31569513 31572504 -211091849 + L1MEc LINE L1 3 5231 -984 300 305 30 0 chr1 31573245 31573376 -211090977 + MIR SINE MIR 8 142 -120 224 254 0 0 chr1 31573911 31573974 -211090379 + L3b LINE CR1 1322 1384 -199 886 265 24 28 chr1 31574041 31574290 -211090063 - MIR SINE MIR 0 262 15 1306 158 9 22 chr1 31575249 31575471 -211088882 + MLT1D LTR MaLR 1 219 -286 832 160 0 13 chr1 31575477 31575627 -211088726 - MER65A LTR ERV1 0 445 298 333 244 13 39 chr1 31575628 31575706 -211088647 - MER31-int LTR ERV1 -977 3959 3884 1192 47 0 20 chr1 31575706 31575854 -211088499 - AluYa5 SINE Alu -8 303 159 1932 102 17 3 chr1 31575954 31576247 -211088106 + L1P LINE L1 4764 5060 -1086 957 218 137 46 chr1 31576251 31577047 -211087306 - L1M4 LINE L1 -1089 5126 4209 6677 72 8 12 chr1 31577050 31578430 -211085923 + L1PA7 LINE L1 4773 6150 -4 297 129 0 86 chr1 31578439 31578464 -211085889 + MLT2C2 LTR ERVL 401 427 -37 336 24 0 0 chr1 31578464 31578505 -211085848 + (CA)n Simple_repeat Simple_repeat 1 41 0 297 129 0 86 chr1 31578505 31578549 -211085804 + MLT2C2 LTR ERVL 427 464 0 10525 120 4 16 chr1 31579472 31581077 -211083276 + HERVH LTR ERV1 1245 2830 -4883 4098 184 14 34 chr1 31581077 31582219 -211082134 + HERVH LTR ERV1 3357 4719 -1935 273 29 0 0 chr1 31582219 31582253 -211082100 + (A)n Simple_repeat Simple_repeat 1 34 0 929 115 0 0 chr1 31582253 31582392 -211081961 + HERVH LTR ERV1 4414 4552 -3161 * 1684 130 0 0 chr1 31582382 31582643 -211081710 + HERVH LTR ERV1 5756 6016 -1697 * 3638 116 18 9 chr1 31582636 31583188 -211081165 + HERVH LTR ERV1 7157 7713 0 808 165 114 47 chr1 31583188 31583572 -211080781 + LTR7 LTR ERV1 1 450 0 2971 227 42 21 chr1 31583572 31583594 -211080759 - L1MEc LINE L1 -3570 2645 2625 4386 132 47 41 chr1 31583594 31584053 -211080300 + MER4E LTR ERV1 1 467 -312 2298 95 0 7 chr1 31584053 31584348 -211080005 - AluSc SINE Alu -16 293 1 4386 132 47 41 chr1 31584348 31584663 -211079690 + MER4E LTR ERV1 467 779 0 2971 227 42 21 chr1 31584663 31584919 -211079434 - L1MEc LINE L1 -3590 2625 2376 1829 180 7 0 chr1 31584919 31585225 -211079128 - AluJb SINE Alu -4 308 1 2971 227 42 21 chr1 31585225 31585934 -211078419 - L1MEc LINE L1 -3839 2376 1677 301 270 87 9 chr1 31585945 31586060 -211078293 + L1MDa LINE L1 1548 1666 -4864 2372 140 65 30 chr1 31586096 31586608 -211077745 + MLT2A2 LTR ERVL 1 554 0 501 242 132 21 chr1 31586647 31586837 -211077516 + L1MDa LINE L1 1582 1792 -4748 785 222 11 16 chr1 31586847 31587032 -211077321 - L1MEc LINE L1 -6177 219 36 305 300 31 23 chr1 31587047 31587177 -211077176 + L2 LINE L2 3165 3295 -18 2356 89 3 7 chr1 31587285 31587587 -211076766 + AluSp SINE Alu 12 312 -1 605 255 100 22 chr1 31587805 31588036 -211076317 + MLT1J LTR MaLR 24 272 -239 206 152 0 0 chr1 31589145 31589178 -211075175 + MIR SINE MIR 117 149 -113 244 215 77 15 chr1 31589574 31589639 -211074714 - MIR SINE MIR -37 225 157 2343 104 3 3 chr1 31589773 31590080 -211074273 + AluSq SINE Alu 1 307 -6 318 320 0 0 chr1 31590898 31591135 -211073218 + (CA)n Simple_repeat Simple_repeat 1 237 0 380 303 6 0 chr1 31591173 31591351 -211073002 + (CA)n Simple_repeat Simple_repeat 2 180 0 325 292 0 18 chr1 31591372 31591540 -211072813 + (CATATA)n Simple_repeat Simple_repeat 6 170 0 2318 106 0 3 chr1 31591766 31592067 -211072286 - AluSq SINE Alu -13 300 1 1845 191 57 9 chr1 31592457 31592880 -211071473 + MER65A LTR ERV1 1 443 -2 2520 259 169 25 chr1 31593112 31593338 -211071015 - L2 LINE L2 -7 3306 3114 1979 120 0 34 chr1 31593338 31593650 -211070703 + AluSx SINE Alu 1 302 0 2520 259 169 25 chr1 31593650 31594971 -211069382 - L2 LINE L2 -199 3114 1530 296 307 125 35 chr1 31595081 31595456 -211068897 - L1MC4a LINE L1 -254 5867 5520 1144 219 66 38 chr1 31595853 31596141 -211068212 - MLT2B3 LTR ERVL -4 550 255 729 169 174 0 chr1 31596144 31596316 -211068037 + L1M4c LINE L1 625 826 -5558 2248 216 28 80 chr1 31596316 31596620 -211067733 - L1M4c LINE L1 -5776 608 351 2096 116 0 24 chr1 31596620 31596914 -211067439 - AluSq SINE Alu -26 287 1 2248 216 28 80 chr1 31596914 31597221 -211067132 - L1M4c LINE L1 -6033 351 29 217 298 0 0 chr1 31597229 31597286 -211067067 + MIR SINE MIR 85 141 -67 904 109 19 13 chr1 31597294 31597450 -211066903 + L1MA8 LINE L1 6129 6285 -6 436 273 154 55 chr1 31597821 31598165 -211066188 + MLT1K LTR MaLR 205 582 -6 432 324 28 0 chr1 31598581 31598726 -211065627 - MIR3 SINE MIR -24 184 36 360 327 54 0 chr1 31599455 31599623 -211064730 - MIR SINE MIR -7 255 79 355 280 19 43 chr1 31600546 31600661 -211063692 + MIR SINE MIR 43 153 -62 300 315 114 0 chr1 31600721 31600870 -211063483 + MIR SINE MIR 97 262 0 414 261 35 12 chr1 31601590 31601771 -211062582 - MIR SINE MIR -63 145 7 380 255 26 46 chr1 31601802 31601955 -211062398 - MIR SINE MIR -78 184 35 317 264 0 12 chr1 31602992 31603084 -211061269 + MIR SINE MIR 50 140 -68 247 298 144 10 chr1 31603151 31603255 -211061098 + L2 LINE L2 3155 3272 0 5141 111 0 21 chr1 31603872 31604641 -211059712 + LTR17 LTR ERV1 1 753 -27 514 185 11 0 chr1 31604641 31604733 -211059620 + LTR17 LTR ERV1 688 780 0 560 177 0 24 chr1 31606058 31606182 -211058171 - MER63 DNA MER1_type -33 1029 909 1051 251 27 8 chr1 31606198 31606444 -211057909 - MER63 DNA MER1_type -118 944 694 642 247 14 82 chr1 31606444 31606735 -211057618 - LTR41 LTR ERVL 0 773 503 553 254 36 53 chr1 31606868 31607080 -211057273 - LTR41 LTR ERVL -556 239 1 458 218 9 9 chr1 31607238 31607348 -211057005 - MIR SINE MIR -51 211 102 556 332 203 8 chr1 31607404 31607778 -211056575 - L3 LINE CR1 -88 1489 1043 182 321 19 0 chr1 31608034 31608087 -211056266 - MIR SINE MIR -136 72 19 210 270 176 0 chr1 31608861 31608935 -211055418 + L2 LINE L2 3225 3311 -2 1935 204 226 26 chr1 31609468 31610013 -211054340 - MLT1E1 LTR MaLR 0 654 1 873 249 101 21 chr1 31610346 31610683 -211053670 - MLT1A1 LTR MaLR 0 365 2 201 213 85 0 chr1 31611419 31611466 -211052887 + MIR SINE MIR 76 126 -82 1563 261 130 42 chr1 31611850 31611921 -211052432 - L1MCc LINE L1 -4191 2931 2868 2330 137 64 15 chr1 31611921 31612329 -211052024 - MSTA LTR MaLR 0 428 1 1563 261 130 42 chr1 31612329 31613749 -211050604 - L1MCc LINE L1 -4254 2868 1073 287 245 129 27 chr1 31614216 31614363 -211049990 - L1MCc LINE L1 -6005 418 257 2010 96 12 23 chr1 31614377 31614500 -211049853 + MER4A LTR ERV1 1 124 -540 183 42 0 0 chr1 31614500 31614524 -211049829 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2010 96 12 23 chr1 31614524 31614914 -211049439 + MER4A LTR ERV1 124 660 -4 275 261 17 50 chr1 31614951 31615070 -211049283 - L1MCa LINE L1 -6227 199 85 481 301 51 0 chr1 31615252 31615408 -211048945 + MIR3 SINE MIR 30 193 -15 193 253 40 0 chr1 31615832 31615907 -211048446 + L2 LINE L2 3108 3185 -128 1154 286 95 16 chr1 31615949 31616660 -211047693 - L2 LINE L2 -1 3312 2543 333 252 49 64 chr1 31617429 31617574 -211046779 + MIR3 SINE MIR 48 193 -15 351 258 128 20 chr1 31617742 31617922 -211046431 - MIR SINE MIR -48 214 15 951 302 82 3 chr1 31618972 31619277 -211045076 + LTR16C LTR ERVL 1 329 -162 926 288 135 31 chr1 31619560 31619894 -211044459 + L1ME3A LINE L1 5555 5950 -220 2120 121 3 7 chr1 31619894 31620192 -211044161 + AluSx SINE Alu 1 297 -15 926 288 135 31 chr1 31620192 31620309 -211044044 + L1ME3A LINE L1 5950 6053 -117 331 290 8 8 chr1 31620497 31620621 -211043732 + (TGAA)n Simple_repeat Simple_repeat 1 124 0 218 267 13 13 chr1 31620674 31620749 -211043604 + GA-rich Low_complexity Low_complexity 2 76 0 204 270 32 16 chr1 31621404 31621467 -211042886 + MIR SINE MIR 88 151 -57 414 0 0 0 chr1 31621535 31621581 -211042772 + (CA)n Simple_repeat Simple_repeat 2 47 0 272 233 78 58 chr1 31621657 31621760 -211042593 + L2 LINE L2 3168 3272 0 298 286 98 60 chr1 31623307 31623461 -211040892 + MIR SINE MIR 20 188 -74 811 174 71 47 chr1 31623461 31623673 -211040680 - MER20 DNA MER1_type 0 219 3 298 286 98 60 chr1 31623673 31623752 -211040601 + MIR SINE MIR 188 262 0 285 262 36 9 chr1 31623994 31624130 -211040223 - MIR SINE MIR -24 238 97 355 278 63 8 chr1 31624163 31624289 -211040064 - L2 LINE L2 -64 3249 3117 366 23 0 0 chr1 31624457 31624500 -211039853 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 307 241 27 62 chr1 31624813 31624925 -211039428 - MIR SINE MIR -71 137 30 * 451 254 21 98 chr1 31624907 31625100 -211039253 + MIR SINE MIR 59 236 -26 282 200 19 124 chr1 31625199 31625304 -211039049 - MIR SINE MIR -111 151 58 384 289 83 13 chr1 31625845 31626129 -211038224 - L1M4c LINE L1 -862 1881 1377 369 199 0 193 chr1 31626252 31626329 -211038024 - MIR SINE MIR -21 241 209 2108 116 56 0 chr1 31626329 31626613 -211037740 - AluSx SINE Alu -8 304 5 369 199 0 193 chr1 31626613 31626696 -211037657 - MIR SINE MIR -53 209 112 418 314 0 15 chr1 31626731 31626868 -211037485 + MIR3 SINE MIR 15 149 -59 1785 155 0 54 chr1 31627596 31627912 -211036441 - AluJb SINE Alu -13 299 1 220 319 92 0 chr1 31628887 31629006 -211035347 - L2 LINE L2 -10 3262 3133 260 270 185 25 chr1 31629241 31629641 -211034712 - L2 LINE L2 -340 2974 2511 819 264 12 49 chr1 31630298 31630544 -211033809 - MIR SINE MIR -6 256 20 253 349 55 7 chr1 31630700 31630846 -211033507 - MIR SINE MIR -77 185 33 330 324 54 32 chr1 31630849 31631034 -211033319 - MIR SINE MIR -61 201 13 568 296 39 5 chr1 31631159 31631365 -211032988 - MIR SINE MIR -48 214 2 385 250 105 16 chr1 31632134 31632258 -211032095 + MIR SINE MIR 108 242 -20 209 360 0 0 chr1 31632402 31632477 -211031876 - MIR SINE MIR -69 193 119 1215 268 129 24 chr1 31632588 31633140 -211031213 + MLT1L LTR MaLR 2 611 -4 501 17 0 0 chr1 31633330 31633388 -211030965 + (GGAA)n Simple_repeat Simple_repeat 2 59 0 2108 140 7 0 chr1 31634466 31634766 -211029587 + AluSx SINE Alu 1 302 -10 364 315 0 34 chr1 31635096 31635137 -211029216 + MIR SINE MIR 30 71 -191 2400 225 14 20 chr1 31635137 31635696 -211028657 + LTR38 LTR ERV1 1 556 0 364 315 0 34 chr1 31635696 31635800 -211028553 + MIR SINE MIR 71 170 -92 197 261 0 17 chr1 31635884 31635988 -211028365 + (ATG)n Simple_repeat Simple_repeat 2 105 -13 2668 124 21 2 chr1 31635988 31636408 -211027945 - MSTA LTR MaLR 0 428 1 197 261 0 17 chr1 31636408 31636422 -211027931 + (ATG)n Simple_repeat Simple_repeat 105 118 0 208 299 75 8 chr1 31636740 31636874 -211027479 + MIR SINE MIR 61 203 -59 228 286 0 0 chr1 31637158 31637214 -211027139 + (TG)n Simple_repeat Simple_repeat 1 56 0 245 254 0 18 chr1 31637697 31637752 -211026601 + polypurine Low_complexity Low_complexity 2 55 0 227 128 0 0 chr1 31637760 31637799 -211026554 - MER31A LTR ERV1 0 485 447 291 109 0 0 chr1 31637826 31637872 -211026481 - MER31A LTR ERV1 -21 464 419 207 299 23 35 chr1 31638788 31638875 -211025478 - MIR3 SINE MIR -11 197 112 271 299 23 35 chr1 31639180 31639267 -211025086 - MIR SINE MIR -164 98 13 856 231 105 10 chr1 31639292 31639586 -211024767 + MER33 DNA MER1_type 2 323 -1 350 248 139 0 chr1 31639905 31640006 -211024347 - MIR SINE MIR -105 157 43 195 269 57 99 chr1 31640563 31640846 -211023507 - L2 LINE L2 -189 3083 2813 505 333 38 30 chr1 31640933 31641003 -211023350 - MIR SINE MIR -6 256 188 2253 125 0 0 chr1 31641003 31641314 -211023039 - AluSx SINE Alu -1 311 1 505 333 38 30 chr1 31641314 31641480 -211022873 - MIR SINE MIR -74 188 18 180 0 0 0 chr1 31641979 31641999 -211022354 + (TTAGGG)n Simple_repeat Simple_repeat 3 22 0 197 362 43 11 chr1 31642168 31642262 -211022091 + L3 LINE CR1 433 529 -1048 343 270 16 63 chr1 31642357 31642483 -211021870 - MER5A DNA MER1_type -24 165 46 2024 137 56 8 chr1 31642578 31642936 -211021417 - THE1C LTR MaLR 0 375 1 217 196 71 0 chr1 31643168 31643224 -211021129 - L2 LINE L2 0 3272 3213 202 300 50 12 chr1 31643351 31643431 -211020922 + L3 LINE CR1 1181 1263 -314 803 296 119 21 chr1 31643487 31643865 -211020488 - L2 LINE L2 -5 3267 2853 522 291 33 23 chr1 31643986 31644158 -211020195 + MIR SINE MIR 7 178 -61 343 278 51 0 chr1 31644966 31645282 -211019071 + (CCTA)n Simple_repeat Simple_repeat 1 331 0 477 343 65 5 chr1 31645489 31645705 -211018648 + MIR SINE MIR 13 241 -21 447 244 148 7 chr1 31645761 31645896 -211018457 + MIR SINE MIR 37 190 -72 205 170 19 38 chr1 31646320 31646373 -211017980 + GA-rich Low_complexity Low_complexity 4 55 0 337 298 106 0 chr1 31646570 31646721 -211017632 + MIR3 SINE MIR 22 188 -20 349 275 48 121 chr1 31647203 31647665 -211016688 + L2 LINE L2 2832 3259 -13 7152 179 127 124 chr1 31647931 31649750 -211014603 - MER52A LTR ERV1 0 1755 1 333 310 108 44 chr1 31649805 31650241 -211014112 + L2 LINE L2 2809 3272 0 658 257 34 17 chr1 31650257 31650432 -211013921 - MIR SINE MIR -12 250 73 341 331 38 8 chr1 31651258 31651391 -211012962 + MIR3 SINE MIR 18 154 -54 1308 220 59 30 chr1 31651504 31651877 -211012476 + MLT1B LTR MaLR 1 384 -6 445 74 0 25 chr1 31652312 31652393 -211011960 + (TG)n Simple_repeat Simple_repeat 2 80 0 324 154 26 115 chr1 31652630 31652708 -211011645 - L2 LINE L2 -38 3275 3205 677 294 114 13 chr1 31652716 31652944 -211011409 - MIR SINE MIR -6 256 6 424 263 140 39 chr1 31653122 31653301 -211011052 - MIR SINE MIR -51 211 15 3114 210 46 4 chr1 31653728 31654467 -211009886 + L1MDb LINE L1 653 1422 -4987 260 240 0 0 chr1 31654522 31654572 -211009781 + Tigger5 DNA MER2_type 2270 2319 -4 386 215 0 13 chr1 31654573 31654652 -211009701 - Tigger5 DNA MER2_type -2245 78 1 3015 207 71 44 chr1 31654652 31654805 -211009548 + L1MDb LINE L1 1430 1577 -4829 1643 191 10 7 chr1 31654805 31655099 -211009254 + AluJo SINE Alu 7 301 -11 3015 207 71 44 chr1 31655099 31656039 -211008314 + L1MDb LINE L1 1577 2552 -3854 308 263 11 0 chr1 31656054 31656149 -211008204 + L1MDb LINE L1 2666 2761 -3645 2428 252 25 6 chr1 31656150 31656879 -211007474 + L1M4 LINE L1 4558 5300 -846 1612 231 44 29 chr1 31656896 31657212 -211007141 + L1MCa LINE L1 159 486 -6078 1616 95 36 0 chr1 31657212 31657434 -211006919 - MER30 DNA MER1_type 0 230 1 1612 231 44 29 chr1 31657434 31657597 -211006756 + L1MCa LINE L1 486 645 -5919 1550 202 28 2 chr1 31657622 31657994 -211006359 + L1MCa LINE L1 606 995 -5070 215 281 70 0 chr1 31659131 31659188 -211005165 + MIR SINE MIR 197 257 -5 496 316 32 6 chr1 31659356 31659514 -211004839 + MIR SINE MIR 20 181 -81 408 325 0 8 chr1 31659557 31659677 -211004676 - MIR SINE MIR -109 153 35 355 313 30 8 chr1 31659911 31660045 -211004308 - MIR SINE MIR -112 150 14 * 379 290 80 35 chr1 31660043 31660243 -211004110 - MIR SINE MIR -22 240 32 273 279 35 0 chr1 31661783 31661869 -211002484 - MIR SINE MIR -79 129 41 304 280 35 77 chr1 31661934 31662077 -211002276 - MIR3 SINE MIR -71 137 1 513 218 143 20 chr1 31662197 31662344 -211002009 - MIR SINE MIR -14 248 84 514 234 127 6 chr1 31662363 31662521 -211001832 + LTR41 LTR ERVL 1 177 -596 593 231 6 26 chr1 31662777 31662933 -211001420 + LTR41 LTR ERVL 608 760 -13 281 284 52 17 chr1 31663437 31663553 -211000800 + ERVL LTR ERVL 578 697 -5067 734 323 72 17 chr1 31663593 31664054 -211000299 + ERVL LTR ERVL 850 1335 -4429 416 316 94 37 chr1 31664103 31664400 -210999953 + ERVL LTR ERVL 1404 1717 -4047 763 291 75 16 chr1 31664441 31664761 -210999592 + ERVL LTR ERVL 1803 2141 -3623 287 148 0 0 chr1 31664768 31664822 -210999531 + LTR33 LTR ERVL 415 468 -53 354 265 20 10 chr1 31664829 31664927 -210999426 + L1MC3 LINE L1 194 292 -5753 2342 205 28 61 chr1 31665028 31665413 -210998940 + L1MC3 LINE L1 500 896 -5436 1911 160 3 40 chr1 31665413 31665763 -210998590 - MER44D DNA MER2_type -2 607 1 2342 205 28 61 chr1 31665763 31666377 -210997976 + L1MC3 LINE L1 896 1480 -4852 11899 183 30 26 chr1 31666377 31668948 -210995405 + L1MC3 LINE L1 5269 7849 -354 2588 121 8 13 chr1 31668948 31669328 -210995025 + MER83B LTR ERV1 1 378 0 11899 183 30 26 chr1 31669328 31669685 -210994668 + L1MC3 LINE L1 7849 8203 0 313 341 53 31 chr1 31669795 31670021 -210994332 - L1ME3 LINE L1 -222 5940 5710 1969 142 30 3 chr1 31671029 31671366 -210992987 + MER41C LTR ERV1 1 346 -208 1326 156 0 9 chr1 31671402 31671626 -210992727 + MER41C LTR ERV1 333 554 0 2805 111 36 7 chr1 31671811 31672227 -210992126 + MSTA LTR MaLR 1 428 0 247 82 5 0 chr1 31672436 31672481 -210991872 - MIR SINE MIR -60 148 102 1243 289 131 34 chr1 31672488 31673539 -210990814 + L1MC4a LINE L1 3172 4324 -1822 235 301 110 15 chr1 31674145 31674281 -210990072 - L2 LINE L2 -213 3059 2911 2010 133 46 27 chr1 31674987 31675355 -210988998 - THE1C LTR MaLR 0 375 1 374 273 61 36 chr1 31675587 31675752 -210988601 + L1MC4a LINE L1 5612 5780 -2028 195 286 0 0 chr1 31675752 31675829 -210988524 + GA-rich Low_complexity Low_complexity 1 77 0 424 280 151 56 chr1 31676274 31676506 -210987847 + L1MC4a LINE L1 5702 5955 -1853 572 315 65 17 chr1 31676529 31676761 -210987592 + MIR SINE MIR 20 262 0 1621 157 70 94 chr1 31676862 31677245 -210987108 + MLT1A2 LTR MaLR 1 374 0 22 56 0 0 chr1 31677250 31677286 -210987067 + AT_rich Low_complexity Low_complexity 1 36 0 227 300 33 11 chr1 31677972 31678062 -210986291 - L2 LINE L2 -18 3254 3163 625 259 95 26 chr1 31678090 31678322 -210986031 - MIR SINE MIR -2 260 13 198 197 28 155 chr1 31678584 31678655 -210985698 + L2 LINE L2 3180 3241 -31 473 265 124 40 chr1 31678685 31678901 -210985452 + MIR SINE MIR 27 260 -2 183 253 24 84 chr1 31679011 31679094 -210985259 - L2 LINE L2 -82 3231 3154 2990 156 30 4 chr1 31679207 31679681 -210984672 + MER66B LTR ERV1 1 486 0 293 246 0 0 chr1 31679703 31679768 -210984585 + MER66B-int LTR ERV1 85 149 -6527 * 9166 245 68 67 chr1 31679766 31683584 -210980769 + MER66B-int LTR ERV1 53 3874 -2802 7981 17 0 0 chr1 31683584 31684579 -210979774 + L1PA3 LINE L1 5159 6153 -2 27 0 0 0 chr1 31684579 31684606 -210979747 + AT_rich Low_complexity Low_complexity 1 27 0 197 33 33 0 chr1 31684797 31684827 -210979526 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2700 132 20 52 chr1 31684828 31685368 -210978985 + MER66B-int LTR ERV1 3879 4401 -2275 259 209 0 45 chr1 31685368 31685435 -210978918 - MER4D LTR ERV1 -805 67 4 872 288 8 4 chr1 31685440 31685683 -210978670 - LOR1-int LTR ERV1 -1022 7098 6855 204 250 19 0 chr1 31685782 31685834 -210978519 + L2 LINE L2 3219 3271 -1 204 118 29 0 chr1 31688969 31689003 -210975350 + GA-rich Low_complexity Low_complexity 4 38 0 406 282 9 0 chr1 31689854 31689964 -210974389 + MIR3 SINE MIR 48 158 -50 495 263 103 0 chr1 31690457 31690613 -210973740 - MIR SINE MIR -10 252 81 1630 279 61 23 chr1 31690649 31691220 -210973133 + MLT1E LTR MaLR 1 593 0 381 43 0 0 chr1 31691531 31691578 -210972775 + (CA)n Simple_repeat Simple_repeat 1 47 0 252 265 17 51 chr1 31691785 31691902 -210972451 + MIR SINE MIR 19 131 -77 310 278 38 30 chr1 31692532 31692665 -210971688 - MIR SINE MIR -109 153 20 323 198 26 52 chr1 31693104 31693220 -210971133 - MIR SINE MIR -77 131 19 279 279 57 24 chr1 31693840 31694024 -210970329 - MIR SINE MIR -70 192 3 262 223 21 32 chr1 31694515 31694609 -210969744 + L2 LINE L2 2920 3012 -260 382 220 50 20 chr1 31694740 31694840 -210969513 - MIR SINE MIR -118 144 42 218 303 184 0 chr1 31695305 31695414 -210968939 + L3 LINE CR1 1332 1460 -117 221 254 32 0 chr1 31696858 31696921 -210967432 + L2 LINE L2 3185 3249 -64 296 174 0 14 chr1 31697014 31697083 -210967270 + (CA)n Simple_repeat Simple_repeat 1 68 0 403 287 151 23 chr1 31697575 31697840 -210966513 - L2 LINE L2 -5 3308 3010 262 179 39 51 chr1 31697867 31697945 -210966408 - MIR SINE MIR -68 140 64 208 331 155 11 chr1 31697993 31698174 -210966179 - MIR SINE MIR -46 216 10 267 167 0 37 chr1 31698907 31698961 -210965392 - L2 LINE L2 0 3272 3221 220 327 64 0 chr1 31699274 31699384 -210964969 - MER5A DNA MER1_type -26 163 47 201 277 67 8 chr1 31699683 31699802 -210964551 - MIR SINE MIR -109 153 28 422 297 45 45 chr1 31700073 31700339 -210964014 + LTR40b LTR ERVL 136 401 -61 270 227 12 31 chr1 31700807 31700905 -210963448 - MIR SINE MIR -7 201 106 209 317 219 0 chr1 31701087 31701210 -210963143 + MIR SINE MIR 107 256 -6 22 0 0 0 chr1 31701704 31701726 -210962627 + AT_rich Low_complexity Low_complexity 1 22 0 848 220 132 32 chr1 31702070 31702442 -210961911 - LTR16A1 LTR ERVL -5 452 44 291 237 113 21 chr1 31702647 31702744 -210961609 + MLT1K LTR MaLR 141 246 -342 408 276 38 62 chr1 31704039 31704249 -210960104 - MIR SINE MIR 0 262 58 652 222 76 0 chr1 31704267 31704438 -210959915 - MIR SINE MIR -1 261 78 188 343 0 20 chr1 31704664 31704766 -210959587 + MIR SINE MIR 29 128 -80 633 261 99 14 chr1 31704988 31705199 -210959154 - MIR SINE MIR -13 249 21 194 259 35 0 chr1 31705782 31705865 -210958488 + MIR SINE MIR 104 148 -60 475 246 78 39 chr1 31706350 31706577 -210957776 - MIR SINE MIR -19 243 3 306 332 169 18 chr1 31706664 31707119 -210957234 - L3 LINE CR1 -522 1055 532 202 281 0 55 chr1 31707127 31707255 -210957098 + (TCTCTG)n Simple_repeat Simple_repeat 3 123 0 * 286 306 0 20 chr1 31707177 31707275 -210957078 + CT-rich Low_complexity Low_complexity 1 96 0 347 305 119 11 chr1 31707496 31707673 -210956680 + MIR SINE MIR 32 227 -35 2229 135 0 0 chr1 31708020 31708323 -210956030 - AluSx SINE Alu -9 303 1 1093 280 86 44 chr1 31708342 31709046 -210955307 + L1ME LINE L1 5035 5768 -396 474 71 36 0 chr1 31709589 31709673 -210954680 + (CA)n Simple_repeat Simple_repeat 1 87 0 247 210 32 0 chr1 31710542 31710604 -210953749 + MIR SINE MIR 81 144 -64 352 268 54 9 chr1 31710761 31710873 -210953480 + MIR SINE MIR 20 136 -72 236 276 45 91 chr1 31711750 31711949 -210952404 + L3 LINE CR1 683 872 -705 204 261 0 0 chr1 31712108 31712154 -210952199 + (TAA)n Simple_repeat Simple_repeat 1 46 0 361 299 206 5 chr1 31712181 31712375 -210951978 - MIR SINE MIR -10 252 20 297 368 88 0 chr1 31712396 31712578 -210951775 + L3 LINE CR1 982 1179 -398 907 319 79 11 chr1 31712579 31712946 -210951407 - L2 LINE L2 0 3313 2922 1074 156 3 1 chr1 31712952 31713553 -210950800 + (ATG)n Simple_repeat Simple_repeat 1 782 0 596 293 86 32 chr1 31713569 31713917 -210950436 - L2 LINE L2 -400 2914 2548 489 306 189 30 chr1 31713880 31714181 -210950172 + L3 LINE CR1 1118 1466 -111 * 437 307 107 40 chr1 31714208 31714433 -210949920 + MIR SINE MIR 22 261 -1 447 163 0 0 chr1 31714434 31714514 -210949839 + (ATG)n Simple_repeat Simple_repeat 2 81 0 317 281 73 0 chr1 31714516 31714598 -210949755 - MER31A-int LTR ERV1 -4834 102 15 2517 135 74 15 chr1 31714647 31715105 -210949248 - MER31A LTR ERV1 0 485 1 574 273 119 65 chr1 31715544 31716021 -210948332 - MLT1J LTR MaLR 0 511 9 694 291 71 10 chr1 31716188 31716657 -210947696 - L1ME4a LINE L1 -23 6098 5567 1510 274 81 7 chr1 31717614 31718194 -210946159 - L1ME2 LINE L1 -78 6881 6259 1829 225 78 96 chr1 31718213 31718932 -210945421 - L1ME2 LINE L1 -743 6198 5503 2157 125 0 29 chr1 31718932 31719245 -210945108 - AluSq SINE Alu -9 304 1 1829 225 78 96 chr1 31719245 31719604 -210944749 - L1ME2 LINE L1 -1438 5503 5139 2293 101 0 10 chr1 31719604 31719902 -210944451 + AluSx SINE Alu 1 295 -17 1720 193 9 29 chr1 31719910 31720086 -210944267 - MER58B DNA MER1_type -2079 341 174 3068 128 30 0 chr1 31720086 31720578 -210943775 + MER84 LTR ERV1 1 507 0 1720 193 9 29 chr1 31720578 31720749 -210943604 - MER58B DNA MER1_type -2246 174 1 4576 69 6 71 chr1 31720777 31721427 -210942926 + SVA Other Other 779 1386 0 2355 257 67 36 chr1 31721505 31721955 -210942398 - L1ME2 LINE L1 -1868 5073 4639 6830 166 23 10 chr1 31721955 31724086 -210940267 - L1PA14 LINE L1 0 6161 4013 2355 257 67 36 chr1 31724086 31724557 -210939796 - L1ME2 LINE L1 -2302 4639 4123 1002 224 59 105 chr1 31724611 31725003 -210939350 - MLT1A2 LTR MaLR 0 374 1 1036 259 154 61 chr1 31725018 31726358 -210937995 - L1ME2 LINE L1 -3875 3247 1783 2820 172 23 14 chr1 31726376 31726947 -210937406 - L1MC3 LINE L1 -21 7764 7189 309 289 11 0 chr1 31726947 31727037 -210937316 - MLT1F1 LTR MaLR -442 125 35 821 128 22 22 chr1 31727037 31727216 -210937137 - L1MC3 LINE L1 -688 7097 6919 462 275 38 17 chr1 31727196 31727386 -210936967 - L1ME2 LINE L1 -4959 1464 1444 * 2339 107 0 3 chr1 31727386 31727686 -210936667 - AluSq SINE Alu -14 299 1 462 275 38 17 chr1 31727686 31727828 -210936525 - L1ME2 LINE L1 -4979 1444 1306 623 308 106 39 chr1 31727976 31728411 -210935942 - L1ME2 LINE L1 -5543 1388 925 927 188 80 148 chr1 31728455 31728780 -210935573 - AluJb SINE Alu -3 309 7 211 220 85 17 chr1 31729193 31729252 -210935101 + L2 LINE L2 3154 3216 -56 1120 285 63 28 chr1 31729286 31729714 -210934639 - L2 LINE L2 0 3313 2871 1332 246 139 19 chr1 31729757 31730121 -210934232 - L2 LINE L2 -1195 2119 1681 2238 126 3 0 chr1 31730121 31730423 -210933930 - AluSx SINE Alu -9 303 1 1332 246 139 19 chr1 31730423 31730541 -210933812 - L2 LINE L2 -1633 1681 1579 749 313 68 15 chr1 31730557 31730883 -210933470 + MLT1K LTR MaLR 47 389 -199 383 257 167 48 chr1 31730939 31731149 -210933204 + L2 LINE L2 3079 3313 0 485 259 184 13 chr1 31731818 31732057 -210932296 - L1ME4a LINE L1 -268 5853 5574 243 170 0 0 chr1 31732210 31732257 -210932096 + (TG)n Simple_repeat Simple_repeat 2 48 0 254 226 65 0 chr1 31732306 31732368 -210931985 - MIR SINE MIR -96 166 101 185 167 0 28 chr1 31732389 31732425 -210931928 + MIR SINE MIR 40 74 -188 238 346 23 23 chr1 31733664 31733794 -210930559 - MIR SINE MIR -16 246 117 361 271 52 0 chr1 31734287 31734383 -210929970 - MIR SINE MIR -62 146 46 315 258 68 76 chr1 31735202 31735334 -210929019 - MIR3 SINE MIR -52 156 26 195 276 186 30 chr1 31736540 31736804 -210927549 + L2 LINE L2 2564 2868 -446 711 246 41 27 chr1 31736915 31737135 -210927218 - MIR SINE MIR 0 262 40 227 321 73 0 chr1 31737268 31737377 -210926976 + L2 LINE L2 3150 3266 -6 255 362 52 0 chr1 31737665 31737781 -210926572 - L2 LINE L2 -34 3238 3117 485 278 99 0 chr1 31737840 31738002 -210926351 + MIR SINE MIR 75 252 -10 781 192 23 25 chr1 31738025 31738335 -210926018 - MLT1B LTR MaLR -17 373 2 786 254 42 65 chr1 31738335 31738815 -210925538 + L1ME3 LINE L1 5641 6109 -53 608 263 109 46 chr1 31739018 31739322 -210925031 - MLT1H LTR MaLR -226 323 1 2079 122 3 3 chr1 31739719 31740005 -210924348 + AluSc SINE Alu 1 286 -23 272 486 37 0 chr1 31740018 31740127 -210924226 + polypurine Low_complexity Low_complexity 2 114 0 858 211 66 18 chr1 31740322 31740550 -210923803 + MIR SINE MIR 24 262 0 233 92 92 0 chr1 31740774 31740839 -210923514 + A-rich Low_complexity Low_complexity 5 75 0 903 272 124 38 chr1 31741232 31741677 -210922676 - MLT1K LTR MaLR -12 576 94 193 279 0 0 chr1 31741782 31741825 -210922528 + L2 LINE L2 3005 3047 -266 676 242 137 48 chr1 31741877 31742104 -210922249 - MIR SINE MIR -4 258 12 189 211 0 0 chr1 31742145 31742197 -210922156 + (CA)n Simple_repeat Simple_repeat 1 52 0 246 335 11 28 chr1 31742223 31742399 -210921954 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 * 473 291 0 12 chr1 31742306 31742471 -210921882 + (CA)n Simple_repeat Simple_repeat 1 163 0 447 354 0 0 chr1 31742571 31742749 -210921604 + (CA)n Simple_repeat Simple_repeat 1 178 0 377 140 0 0 chr1 31742801 31742858 -210921495 + FRAM SINE Alu 61 117 -49 216 303 0 0 chr1 31742858 31742924 -210921429 + (CA)n Simple_repeat Simple_repeat 1 66 0 219 315 46 28 chr1 31742925 31743033 -210921320 + L2 LINE L2 3158 3267 -46 804 294 4 17 chr1 31743821 31744059 -210920294 - MIR SINE MIR 0 262 28 790 238 25 30 chr1 31744175 31744410 -210919943 - MIR SINE MIR -14 248 15 1483 186 147 55 chr1 31744446 31744503 -210919850 - MLT1D LTR MaLR -3 502 452 1621 173 7 14 chr1 31744503 31744798 -210919555 + AluJo SINE Alu 1 293 -19 1824 127 62 0 chr1 31744800 31745076 -210919277 + AluSx SINE Alu 1 293 -19 1483 186 147 55 chr1 31745076 31745472 -210918881 - MLT1D LTR MaLR -53 452 4 403 282 73 65 chr1 31745479 31745727 -210918626 - MIR SINE MIR -3 259 10 535 260 41 44 chr1 31746378 31746627 -210917726 - MIR3 SINE MIR -9 253 3 482 191 40 32 chr1 31747317 31747443 -210916910 + MIR SINE MIR 25 151 -57 358 266 44 18 chr1 31747842 31747955 -210916398 + MIR SINE MIR 60 175 -87 233 280 20 40 chr1 31747997 31748097 -210916256 - L2 LINE L2 -16 3256 3159 220 265 0 0 chr1 31748188 31748237 -210916116 - MIR SINE MIR -104 104 56 412 290 146 51 chr1 31750291 31750681 -210913672 + L2 LINE L2 2887 3313 0 202 256 144 22 chr1 31750989 31751079 -210913274 + MIR SINE MIR 47 147 -115 214 339 83 9 chr1 31751783 31751892 -210912461 + MIR SINE MIR 92 208 -54 184 365 16 0 chr1 31752029 31752092 -210912261 - L2 LINE L2 -7 3306 3243 200 258 30 15 chr1 31752530 31752596 -210911757 - MIR SINE MIR -115 147 81 655 271 29 0 chr1 31752662 31752832 -210911521 - MIR SINE MIR 0 262 88 284 352 15 51 chr1 31752850 31753046 -210911307 + L2 LINE L2 3112 3300 -13 271 268 79 10 chr1 31753419 31753571 -210910782 - MIR SINE MIR -36 226 61 1290 273 79 54 chr1 31753612 31754174 -210910179 - LTR41 LTR ERVL 0 795 215 367 324 25 26 chr1 31754193 31754428 -210909925 - LTR41 LTR ERVL -423 350 215 1175 209 70 20 chr1 31754446 31754747 -210909606 - LTR41 LTR ERVL -456 317 2 6361 281 60 33 chr1 31755112 31757333 -210907020 - ERVL LTR ERVL -394 5370 3090 574 314 21 0 chr1 31757336 31757524 -210906829 - ERVL LTR ERVL -2866 2898 2707 405 326 57 35 chr1 31757717 31758033 -210906320 - L2 LINE L2 0 3313 2991 243 292 14 0 chr1 31758053 31758125 -210906228 - MER94 DNA DNA -58 76 4 233 358 12 0 chr1 31758135 31758216 -210906137 + MIR SINE MIR 181 262 0 220 336 37 9 chr1 31758894 31759001 -210905352 - MIR SINE MIR -69 193 84 339 313 45 0 chr1 31759156 31759290 -210905063 + MER5A DNA MER1_type 50 189 0 481 252 98 0 chr1 31760040 31760183 -210904170 - MIR SINE MIR 0 262 106 488 268 11 55 chr1 31762227 31762410 -210901943 - MER117 DNA MER1_type -16 181 7 417 313 119 15 chr1 31762452 31762653 -210901700 + MIR SINE MIR 34 255 -7 204 294 29 0 chr1 31762738 31762806 -210901547 + MIR SINE MIR 49 118 -90 417 346 20 7 chr1 31763270 31763423 -210900930 + L3 LINE CR1 1281 1435 -142 202 275 29 14 chr1 31764178 31764247 -210900106 + L2 LINE L2 3193 3262 -10 757 316 8 23 chr1 31764592 31764848 -210899505 - MIR SINE MIR -8 254 3 4134 235 61 34 chr1 31765135 31768017 -210896336 + L1MDa LINE L1 1044 4002 -2538 2866 264 64 26 chr1 31767997 31769059 -210895294 + L1MDa LINE L1 4376 5485 -1055 * 2082 125 0 0 chr1 31769059 31769362 -210894991 - AluSx SINE Alu -9 303 1 2866 264 64 26 chr1 31769362 31769442 -210894911 + L1MDa LINE L1 5485 5561 -979 308 301 32 0 chr1 31769724 31769817 -210894536 - L2 LINE L2 0 3313 3218 359 279 18 14 chr1 31769851 31770004 -210894349 - MLT1J2 LTR MaLR -191 218 67 346 164 14 55 chr1 31770696 31770769 -210893584 + AluJ/FRAM SINE Alu 230 299 -3 494 246 22 22 chr1 31770782 31770920 -210893433 + L1M4 LINE L1 4643 4780 -1366 1776 202 63 14 chr1 31770925 31771351 -210893002 + MLT1C LTR MaLR 21 467 0 252 252 70 26 chr1 31771355 31771470 -210892883 - MIR SINE MIR -110 152 33 288 297 89 0 chr1 31771854 31771955 -210892398 - L2 LINE L2 -6 3266 3157 300 273 87 75 chr1 31772008 31772261 -210892092 - L2 LINE L2 -347 2967 2712 287 269 0 60 chr1 31772341 31772523 -210891830 + (GGGTG)n Simple_repeat Simple_repeat 1 171 0 283 288 76 83 chr1 31773290 31773554 -210890799 + L2 LINE L2 2995 3256 -16 619 294 60 9 chr1 31773659 31773877 -210890476 + MIR SINE MIR 22 250 -12 329 329 29 29 chr1 31773891 31774031 -210890322 + MLT1K LTR MaLR 38 177 -411 854 275 83 4 chr1 31774085 31774325 -210890028 + MLT1K LTR MaLR 330 588 0 200 292 14 14 chr1 31774357 31774429 -210889924 - MIR SINE MIR -157 105 34 198 284 59 49 chr1 31775098 31775200 -210889153 + L2 LINE L2 3209 3311 -2 180 341 57 0 chr1 31775359 31775447 -210888906 - MIR3 SINE MIR -107 101 9 2386 130 28 3 chr1 31775614 31775969 -210888384 - THE1B LTR MaLR 0 364 1 495 160 0 0 chr1 31775984 31776078 -210888275 + CT-rich Low_complexity Low_complexity 1 94 0 432 0 0 0 chr1 31776937 31776985 -210887368 + (TG)n Simple_repeat Simple_repeat 2 49 0 488 209 83 28 chr1 31777045 31777211 -210887142 - MIR SINE MIR -65 143 23 581 246 23 0 chr1 31777601 31777731 -210886622 - MER94 DNA DNA -1 133 1 248 299 65 0 chr1 31779936 31780013 -210884340 - MIR SINE MIR -70 192 111 251 154 19 0 chr1 31780023 31780075 -210884278 - MIR SINE MIR -130 132 80 199 175 88 18 chr1 31780305 31780362 -210883991 - MIR SINE MIR -147 115 55 342 0 0 0 chr1 31780861 31780899 -210883454 + (CA)n Simple_repeat Simple_repeat 2 39 0 508 276 56 61 chr1 31782573 31782610 -210881743 + MIR SINE MIR 64 100 -162 2514 50 0 0 chr1 31782610 31782907 -210881446 - AluY SINE Alu -14 297 1 508 276 56 61 chr1 31782907 31783065 -210881288 + MIR SINE MIR 100 258 -4 180 279 33 0 chr1 31784075 31784136 -210880217 - MIR SINE MIR -98 110 48 324 371 7 0 chr1 31784765 31784905 -210879448 + MIR SINE MIR 2 142 -120 1397 251 99 8 chr1 31785105 31785468 -210878885 - MSTD LTR MaLR 0 396 1 421 295 9 0 chr1 31786262 31786374 -210877979 + MER81 DNA DNA 1 113 -1 344 313 30 0 chr1 31787857 31787991 -210876362 - MIR3 SINE MIR -56 152 15 204 328 25 25 chr1 31788932 31789051 -210875302 - MIR3 SINE MIR -77 131 13 210 274 39 29 chr1 31789785 31789887 -210874466 + MIR SINE MIR 31 133 -129 286 333 59 0 chr1 31789908 31790043 -210874310 + MIR SINE MIR 87 229 -33 315 287 85 0 chr1 31790446 31790575 -210873778 + MIR3 SINE MIR 55 194 -14 604 260 68 11 chr1 31790645 31790852 -210873501 - MIR SINE MIR -11 251 35 520 250 64 0 chr1 31790979 31791119 -210873234 - MIR SINE MIR -78 184 36 678 224 87 40 chr1 31791499 31791821 -210872532 + L2 LINE L2 2622 2958 -356 329 241 62 62 chr1 31792627 31792739 -210871614 - L2 LINE L2 -1 3312 3201 291 283 10 10 chr1 31793350 31793449 -210870904 + MIR SINE MIR 29 127 -81 449 265 165 29 chr1 31794503 31794673 -210869680 - MIR SINE MIR -55 207 15 292 273 80 0 chr1 31795032 31795120 -210869233 + MIR SINE MIR 49 143 -119 274 300 64 36 chr1 31795553 31795693 -210868660 - MIR3 SINE MIR -23 185 42 294 308 43 8 chr1 31795741 31795858 -210868495 - MIR SINE MIR -1 261 141 377 285 60 26 chr1 31795974 31796125 -210868228 - MIR SINE MIR -33 229 74 800 267 32 16 chr1 31796127 31796374 -210867979 - MIR SINE MIR -4 258 8 314 209 30 15 chr1 31796383 31796450 -210867903 - MIR SINE MIR -174 88 21 389 264 19 88 chr1 31796676 31796735 -210867618 + MER5A DNA MER1_type 16 78 -111 2043 95 0 14 chr1 31796735 31797042 -210867311 + AluSg SINE Alu 1 303 0 389 264 19 88 chr1 31797042 31797140 -210867213 + MER5A DNA MER1_type 78 163 -26 1917 147 57 34 chr1 31797162 31797516 -210866837 + THE1B LTR MaLR 3 364 0 321 197 252 31 chr1 31797659 31797786 -210866567 - MIR SINE MIR -75 187 33 454 274 61 18 chr1 31798401 31798461 -210865892 + MIR SINE MIR 85 141 -121 2130 89 0 3 chr1 31798461 31798754 -210865599 + AluSg SINE Alu 1 292 -18 454 274 61 18 chr1 31798754 31798857 -210865496 + MIR SINE MIR 141 255 -7 186 222 0 0 chr1 31798966 31799020 -210865333 + (TG)n Simple_repeat Simple_repeat 1 54 0 2634 157 165 46 chr1 31799057 31799314 -210865039 - MER39 LTR ERV1 -47 660 435 1708 100 78 22 chr1 31799314 31799585 -210864768 + AluSx SINE Alu 1 286 -26 186 43 0 0 chr1 31799585 31799608 -210864745 + (GA)n Simple_repeat Simple_repeat 2 24 0 2634 157 165 46 chr1 31799608 31799936 -210864417 - MER39 LTR ERV1 -271 436 4 754 266 63 7 chr1 31800913 31801214 -210863139 + L1M4 LINE L1 3576 3884 -2262 * 15713 175 26 17 chr1 31801191 31807593 -210856760 + L1MA4 LINE L1 14 6475 -7 204 40 0 0 chr1 31807593 31807618 -210856735 + (TG)n Simple_repeat Simple_repeat 2 26 0 1353 159 54 14 chr1 31807618 31807894 -210856459 + L1MC3 LINE L1 7491 7777 -8 25 31 0 0 chr1 31807894 31807926 -210856427 + AT_rich Low_complexity Low_complexity 1 32 0 6608 186 26 6 chr1 31807947 31809736 -210854617 + L1M4 LINE L1 4022 5848 -518 405 0 0 0 chr1 31809905 31809950 -210854403 + (TG)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr1 31810097 31810124 -210854229 + AT_rich Low_complexity Low_complexity 1 27 0 2651 102 3 0 chr1 31810260 31810614 -210853739 + THE1A LTR MaLR 1 355 0 11729 100 9 1 chr1 31810614 31812181 -210852172 + THE1A-int LTR MaLR 1 1580 0 1932 72 4 0 chr1 31812181 31812418 -210851935 + THE1A LTR MaLR 1 238 -117 1027 42 0 0 chr1 31812419 31812538 -210851815 + L1PA2 LINE L1 3 121 -6025 40287 30 22 1 chr1 31812538 31818208 -210846145 + L1PA2 LINE L1 399 6190 0 1078 75 0 0 chr1 31818210 31818343 -210846010 + THE1A LTR MaLR 223 355 0 2295 199 38 16 chr1 31818786 31819234 -210845119 - MER70A LTR ERVL -14 458 1 397 309 18 0 chr1 31819301 31819411 -210844942 - MIR SINE MIR -90 172 61 232 217 17 17 chr1 31819906 31819966 -210844387 - MIR SINE MIR -116 92 33 358 175 12 62 chr1 31820227 31820307 -210844046 + MIR SINE MIR 68 143 -65 208 344 74 8 chr1 31820969 31821091 -210843262 - L2 LINE L2 -6 3266 3137 529 260 44 31 chr1 31821177 31821404 -210842949 - LTR16C LTR ERVL 0 491 262 30 0 0 0 chr1 31821632 31821662 -210842691 + AT_rich Low_complexity Low_complexity 1 30 0 373 277 39 67 chr1 31822239 31822437 -210841916 + MIR3 SINE MIR 6 196 -66 222 164 109 0 chr1 31822514 31822569 -210841784 + MIR3 SINE MIR 105 165 -43 314 305 113 7 chr1 31823384 31823535 -210840818 + MIR SINE MIR 22 188 -74 318 311 86 7 chr1 31823725 31823876 -210840477 - MIR3 SINE MIR -19 189 27 314 222 0 16 chr1 31823902 31823965 -210840388 + MIR SINE MIR 14 75 -187 * 472 270 63 83 chr1 31823964 31824520 -210839833 - L2 LINE L2 -1 3271 2676 619 233 50 28 chr1 31824528 31824708 -210839645 + MIR SINE MIR 73 256 -6 522 356 26 17 chr1 31825366 31825596 -210838757 + MIR SINE MIR 8 239 -23 182 318 45 23 chr1 31825982 31826070 -210838283 - L2 LINE L2 -42 3271 3182 184 276 293 0 chr1 31826151 31826274 -210838079 + L2 LINE L2 1758 1916 -1398 1485 262 207 8 chr1 31826495 31827129 -210837224 + L2 LINE L2 1862 2621 -693 317 270 90 28 chr1 31827139 31827317 -210837036 - MLT1J LTR MaLR -322 189 1 338 296 67 41 chr1 31827355 31827627 -210836726 - L2 LINE L2 -284 3029 2741 42974 56 2 2 chr1 31827628 31833769 -210830584 - L1PA5 LINE L1 0 6154 10 192 288 179 22 chr1 31833814 31834043 -210830310 - L2 LINE L2 -656 2658 2394 1673 238 145 12 chr1 31834448 31834966 -210829387 + MLT1G1 LTR MaLR 1 587 -8 267 311 66 0 chr1 31835214 31835320 -210829033 + L2 LINE L2 3160 3272 0 302 270 34 109 chr1 31835727 31835994 -210828359 - L1M2a LINE L1 -6208 960 714 297 0 0 0 chr1 31835996 31836029 -210828324 + (TG)n Simple_repeat Simple_repeat 2 34 0 251 292 87 25 chr1 31836666 31836827 -210827526 + MIR SINE MIR 13 183 -79 382 319 15 15 chr1 31837753 31837888 -210826465 + MIR3 SINE MIR 20 154 -54 206 279 139 0 chr1 31838009 31838095 -210826258 + MIR SINE MIR 59 156 -106 315 104 0 0 chr1 31838177 31838225 -210826128 + (ATG)n Simple_repeat Simple_repeat 3 50 0 777 194 0 0 chr1 31838266 31838446 -210825907 + (ATG)n Simple_repeat Simple_repeat 1 180 0 667 182 6 17 chr1 31838456 31838637 -210825716 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 343 314 0 0 chr1 31838640 31838742 -210825611 + (ATG)n Simple_repeat Simple_repeat 1 102 0 2281 89 6 6 chr1 31838742 31839086 -210825267 + AluSp SINE Alu 1 402 0 372 103 0 0 chr1 31839086 31839144 -210825209 + (ATG)n Simple_repeat Simple_repeat 1 58 0 475 254 32 12 chr1 31839200 31839335 -210825018 - MIR3 SINE MIR -22 186 48 333 277 68 34 chr1 31839676 31839824 -210824529 - MIR3 SINE MIR -53 155 3 23 54 0 0 chr1 31839958 31839995 -210824358 + AT_rich Low_complexity Low_complexity 1 37 0 806 277 63 57 chr1 31840113 31840607 -210823746 + LTR33 LTR ERVL 24 520 -1 262 250 0 0 chr1 31840738 31840794 -210823559 + MIR SINE MIR 199 254 -8 471 272 55 41 chr1 31841068 31841250 -210823103 - MIR SINE MIR -61 147 3 2565 116 5 24 chr1 31841598 31841969 -210822384 + THE1B LTR MaLR 1 364 0 399 242 6 91 chr1 31842869 31843034 -210821319 + L2 LINE L2 3163 3313 0 196 29 0 57 chr1 31843495 31843530 -210820823 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 811 121 0 0 chr1 31843531 31843647 -210820706 - AluSq/x SINE Alu -197 116 1 336 177 2 0 chr1 31844019 31844089 -210820264 + MIR SINE MIR 74 145 -63 2369 77 0 3 chr1 31844824 31845135 -210819218 + AluY SINE Alu 1 310 -1 264 246 0 29 chr1 31845153 31845222 -210819131 - MLT1K LTR MaLR -111 477 411 314 275 42 49 chr1 31845390 31845532 -210818821 - MLT1K LTR MaLR -247 341 201 201 277 106 32 chr1 31845776 31845870 -210818483 - MIR SINE MIR -108 154 54 347 256 12 0 chr1 31846373 31846459 -210817894 - MIR SINE MIR -57 151 65 191 241 277 21 chr1 31846487 31846628 -210817725 - MIR SINE MIR -34 228 52 252 346 92 20 chr1 31847618 31847771 -210816582 + ERVL LTR ERVL 513 676 -5088 1686 331 64 74 chr1 31847828 31849439 -210814914 + ERVL LTR ERVL 2322 3916 -1738 432 258 115 33 chr1 31849621 31849803 -210814550 - MIR SINE MIR -56 206 10 220 256 154 0 chr1 31849989 31850067 -210814286 - MIR SINE MIR -112 150 61 272 316 156 9 chr1 31850294 31850506 -210813847 + L2 LINE L2 2947 3189 -124 500 298 84 1 chr1 31850509 31850795 -210813558 - LTR16C LTR ERVL -2 489 154 187 204 0 41 chr1 31851092 31851141 -210813212 + MIR3 SINE MIR 133 179 -29 850 157 0 16 chr1 31851414 31851657 -210812696 + (TG)n Simple_repeat Simple_repeat 1 239 0 283 288 76 83 chr1 31852785 31853049 -210811304 + L2 LINE L2 2995 3256 -16 609 295 60 9 chr1 31853155 31853372 -210810981 + MIR SINE MIR 23 250 -12 329 329 29 29 chr1 31853386 31853526 -210810827 + MLT1K LTR MaLR 38 177 -411 854 275 83 4 chr1 31853580 31853820 -210810533 + MLT1K LTR MaLR 330 588 0 200 292 14 14 chr1 31853852 31853924 -210810429 - MIR SINE MIR -157 105 34 198 284 59 49 chr1 31854593 31854695 -210809658 + L2 LINE L2 3209 3311 -2 180 341 57 0 chr1 31854854 31854942 -210809411 - MIR3 SINE MIR -107 101 9 2386 130 28 3 chr1 31855109 31855464 -210808889 - THE1B LTR MaLR 0 364 1 495 160 0 0 chr1 31855479 31855573 -210808780 + CT-rich Low_complexity Low_complexity 1 94 0 270 0 0 0 chr1 31856432 31856462 -210807891 + (TG)n Simple_repeat Simple_repeat 2 31 0 469 210 88 27 chr1 31856524 31856687 -210807666 - MIR SINE MIR -65 143 23 581 246 23 0 chr1 31857077 31857207 -210807146 - MER94 DNA DNA -1 133 1 267 298 24 0 chr1 31859225 31859309 -210805044 - MIR SINE MIR -67 141 56 2416 156 7 30 chr1 31859763 31860168 -210804185 + MSTD LTR MaLR 1 396 0 351 158 16 0 chr1 31860169 31860237 -210804116 - MIR SINE MIR -61 147 79 278 283 97 3 chr1 31860446 31860565 -210803788 + MIR SINE MIR 35 154 -56 352 267 56 0 chr1 31860971 31861061 -210803292 - MIR SINE MIR -70 192 98 245 116 0 0 chr1 31864564 31864607 -210799746 + L2 LINE L2 3271 3313 0 331 282 18 36 chr1 31864630 31864740 -210799613 - MIR SINE MIR -75 187 80 211 243 72 0 chr1 31864967 31865047 -210799306 - MIR SINE MIR -89 119 34 252 0 0 0 chr1 31865526 31865554 -210798799 + (CA)n Simple_repeat Simple_repeat 2 29 0 508 276 56 61 chr1 31867228 31867265 -210797088 + MIR SINE MIR 64 100 -162 2514 50 0 0 chr1 31867265 31867562 -210796791 - AluY SINE Alu -14 297 1 508 276 56 61 chr1 31867562 31867720 -210796633 + MIR SINE MIR 100 258 -4 180 279 33 0 chr1 31868730 31868791 -210795562 - MIR SINE MIR -98 110 48 324 371 7 0 chr1 31869420 31869560 -210794793 + MIR SINE MIR 2 142 -120 1397 251 99 8 chr1 31869760 31870123 -210794230 - MSTD LTR MaLR 0 396 1 423 295 9 0 chr1 31870917 31871029 -210793324 + MER81 DNA DNA 1 113 -1 344 313 30 0 chr1 31872512 31872646 -210791707 - MIR3 SINE MIR -56 152 15 366 156 0 0 chr1 31873383 31873447 -210790906 + GA-rich Low_complexity Low_complexity 4 67 0 693 230 0 0 chr1 31874008 31874186 -210790167 + GA-rich Low_complexity Low_complexity 3 180 0 282 195 219 0 chr1 31874290 31874372 -210789981 - MIR SINE MIR -77 131 32 369 203 236 123 chr1 31875370 31875582 -210788771 + MIR SINE MIR 8 243 -19 234 261 102 0 chr1 31875949 31876037 -210788316 - MIR SINE MIR -69 139 43 205 322 51 17 chr1 31876617 31876735 -210787618 - L2 LINE L2 -39 3233 3112 181 320 51 0 chr1 31876805 31876883 -210787470 - MIR SINE MIR -13 249 168 392 235 50 0 chr1 31876900 31876914 -210787439 - L1MA10 LINE L1 0 6334 6321 2948 221 64 31 chr1 31876914 31878325 -210786028 - L1ME1 LINE L1 -5 6161 4710 1750 177 0 22 chr1 31878325 31878641 -210785712 - AluJo SINE Alu 0 312 4 2948 221 64 31 chr1 31878641 31878743 -210785610 - L1ME1 LINE L1 -1456 4710 4613 266 104 91 0 chr1 31878745 31878822 -210785531 + (TA)n Simple_repeat Simple_repeat 1 84 0 367 303 16 25 chr1 31878825 31878947 -210785406 + L1MC4 LINE L1 6599 6719 -1323 304 255 51 31 chr1 31878885 31878973 -210785380 - L1MC4 LINE L1 -1333 6709 6617 * 1962 102 53 11 chr1 31878973 31879257 -210785096 + AluSx SINE Alu 6 301 -11 623 241 27 62 chr1 31879294 31879518 -210784835 + LTR52 LTR ERVL 4 219 -202 799 213 9 5 chr1 31879709 31879920 -210784433 - L1ME1 LINE L1 -1550 4596 4385 305 236 22 22 chr1 31879956 31880045 -210784308 + L1M4 LINE L1 4844 4932 -1214 3769 256 21 25 chr1 31880077 31881338 -210783015 - L1ME1 LINE L1 -1769 4377 3121 978 291 93 8 chr1 31881364 31881749 -210782604 + MLT1K LTR MaLR 8 425 -163 342 238 25 0 chr1 31881790 31881870 -210782483 + L2 LINE L2 3194 3275 -38 410 289 8 16 chr1 31881885 31882013 -210782340 + MLT1K LTR MaLR 454 580 -8 208 211 58 0 chr1 31882040 31882092 -210782261 + L2 LINE L2 3217 3271 -1 191 232 24 85 chr1 31882457 31882539 -210781814 + MIR SINE MIR 21 97 -165 212 202 239 37 chr1 31882543 31882652 -210781701 - MIR SINE MIR -62 146 16 379 269 37 15 chr1 31882928 31883062 -210781291 - MIR SINE MIR -64 144 8 570 313 77 38 chr1 31884138 31884660 -210779693 - L2 LINE L2 0 3272 2728 252 228 0 0 chr1 31885320 31885377 -210778976 - MIR SINE MIR -84 124 68 2927 131 14 0 chr1 31885647 31886075 -210778278 + MER57B LTR ERV1 1 434 0 1326 242 109 5 chr1 31886124 31886509 -210777844 - MLT1H LTR MaLR -124 425 1 372 231 0 0 chr1 31886533 31886611 -210777742 - MIR SINE MIR -138 124 47 321 330 27 9 chr1 31886708 31886820 -210777533 - L2 LINE L2 -32 3240 3127 205 189 0 0 chr1 31886875 31886912 -210777441 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 346 193 42 0 chr1 31887850 31887930 -210776423 + MER5A DNA MER1_type 16 109 -80 202 264 132 0 chr1 31888065 31888171 -210776182 + MIR SINE MIR 10 129 -133 * 312 312 53 49 chr1 31888152 31888399 -210775954 + L2 LINE L2 2877 3124 -148 192 298 35 0 chr1 31888420 31888477 -210775876 + L2 LINE L2 3235 3293 -20 404 242 102 8 chr1 31889221 31889349 -210775004 + MER115 DNA AcHobo 114 253 -440 231 214 0 0 chr1 31889714 31889784 -210774569 + (TGG)n Simple_repeat Simple_repeat 3 72 0 303 267 133 9 chr1 31890306 31890411 -210773942 + MIR SINE MIR 84 201 -61 2316 111 51 20 chr1 31890488 31890841 -210773512 - THE1B LTR MaLR 0 364 1 662 247 12 12 chr1 31891431 31891601 -210772752 - MIR SINE MIR -2 260 91 587 297 118 9 chr1 31891661 31891890 -210772463 + MER115 DNA AcHobo 2 255 -438 281 250 66 0 chr1 31891944 31892020 -210772333 - MIR SINE MIR -177 85 5 273 242 0 0 chr1 31892078 31892140 -210772213 - MLT1H LTR MaLR 0 549 488 713 266 0 1 chr1 31892141 31892301 -210772052 + ERVL LTR ERVL 4105 4300 -1223 1726 320 23 18 chr1 31892301 31892955 -210771398 + ERVL LTR ERVL 4778 5434 -330 557 218 12 67 chr1 31893256 31893421 -210770932 + LTR41 LTR ERVL 6 161 -612 526 237 100 60 chr1 31893648 31893897 -210770456 + LTR41 LTR ERVL 506 764 -9 217 170 64 0 chr1 31894060 31894107 -210770246 + T-rich Low_complexity Low_complexity 2 51 0 2083 148 39 74 chr1 31894336 31894744 -210769609 - MER65A LTR ERV1 0 445 53 201 39 0 0 chr1 31894744 31894770 -210769583 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2083 148 39 74 chr1 31894770 31894822 -210769531 - MER65A LTR ERV1 -392 53 1 188 308 39 0 chr1 31895268 31895346 -210769007 - MIR SINE MIR -67 141 61 509 310 5 25 chr1 31895883 31896080 -210768273 + L1MEc LINE L1 1667 1859 -4537 2586 98 13 3 chr1 31896083 31896462 -210767891 + L1PA10 LINE L1 5685 6067 -101 429 110 0 0 chr1 31896562 31896635 -210767718 + (TG)n Simple_repeat Simple_repeat 2 74 0 411 273 19 32 chr1 31897486 31897640 -210766713 + MIR3 SINE MIR 29 180 -28 605 173 0 0 chr1 31897683 31897787 -210766566 + MIR SINE MIR 72 175 -87 289 203 0 78 chr1 31898444 31898572 -210765781 + (CACCC)n Simple_repeat Simple_repeat 3 120 0 329 244 71 6 chr1 31900143 31900302 -210764051 + MIR SINE MIR 17 183 -53 426 108 0 0 chr1 31900388 31900453 -210763900 + (ATG)n Simple_repeat Simple_repeat 1 65 0 1594 178 89 56 chr1 31900458 31900496 -210763857 - MLT2D LTR ERVL -7 407 372 393 58 0 0 chr1 31900496 31900548 -210763805 + (TG)n Simple_repeat Simple_repeat 1 52 0 1594 178 89 56 chr1 31900548 31900903 -210763450 - MLT2D LTR ERVL -42 372 1 3921 102 3 50 chr1 31901050 31901686 -210762667 + LTR14B LTR ERVK 3 608 0 272 305 0 61 chr1 31901720 31901801 -210762552 + L2 LINE L2 3144 3216 -56 2367 178 63 0 chr1 31901801 31902244 -210762109 + MER70A LTR ERVL 2 472 0 272 305 0 61 chr1 31902244 31902293 -210762060 + L2 LINE L2 3216 3266 -6 427 277 0 0 chr1 31903230 31903331 -210761022 - MIR SINE MIR -63 145 45 306 274 126 11 chr1 31903438 31903533 -210760820 + L2 LINE L2 3196 3301 -12 261 274 14 0 chr1 31904144 31904217 -210760136 - L2 LINE L2 0 3313 3240 380 323 0 8 chr1 31904743 31904867 -210759486 + MIR SINE MIR 61 183 -79 284 252 56 47 chr1 31905362 31905469 -210758884 + MIR SINE MIR 42 149 -113 185 331 25 50 chr1 31905537 31905658 -210758695 - L2 LINE L2 -1076 2238 2121 188 367 22 0 chr1 31905677 31905767 -210758586 + L3b LINE CR1 1304 1395 -188 739 219 104 0 chr1 31905799 31905982 -210758371 + MIR SINE MIR 56 257 -5 336 248 0 0 chr1 31905990 31906107 -210758246 + (ATG)n Simple_repeat Simple_repeat 2 118 0 1751 158 43 51 chr1 31906108 31906272 -210758081 + MLT1B LTR MaLR 2 166 -224 2293 108 7 0 chr1 31906272 31906568 -210757785 + AluSx SINE Alu 1 298 -14 1751 158 43 51 chr1 31906568 31906795 -210757558 + MLT1B LTR MaLR 166 390 0 1893 165 19 21 chr1 31907348 31907724 -210756629 - THE1C LTR MaLR 0 375 1 576 251 10 8 chr1 31907810 31908204 -210756149 + (ATGGTG)n Simple_repeat Simple_repeat 1 395 0 679 208 0 16 chr1 31908206 31908389 -210755964 + (ATG)n Simple_repeat Simple_repeat 1 180 0 422 257 0 6 chr1 31908419 31908590 -210755763 + (ATG)n Simple_repeat Simple_repeat 1 170 0 793 188 0 15 chr1 31908610 31908879 -210755474 + (ATGGTG)n Simple_repeat Simple_repeat 1 265 0 497 313 142 25 chr1 31909581 31910124 -210754229 - L2 LINE L2 -1 3312 2709 252 321 9 9 chr1 31910617 31910723 -210753630 + MIR SINE MIR 38 143 -119 243 0 0 0 chr1 31910762 31910789 -210753564 + (CA)n Simple_repeat Simple_repeat 2 28 0 3180 118 24 66 chr1 31910838 31911382 -210752971 - MER1A DNA MER1_type -8 521 1 338 61 20 0 chr1 31911864 31911913 -210752440 + (GA)n Simple_repeat Simple_repeat 2 51 0 184 242 0 0 chr1 31911960 31911993 -210752360 + L2 LINE L2 3225 3257 -15 183 246 58 0 chr1 31912167 31912236 -210752117 + MER5B DNA MER1_type 15 87 -91 2604 143 48 2 chr1 31912641 31913102 -210751251 - Tigger3b DNA MER2_type 0 1231 750 42519 42 1 3 chr1 31913105 31919272 -210745081 + L1PA4 LINE L1 1 6152 -3 4162 127 41 35 chr1 31919597 31919996 -210744357 - Tigger3b DNA MER2_type -2270 758 350 2314 113 0 10 chr1 31919996 31920307 -210744046 - AluSc SINE Alu -1 308 1 4162 127 41 35 chr1 31920307 31920657 -210743696 - Tigger3b DNA MER2_type -2678 350 4 602 235 54 34 chr1 31920661 31920791 -210743562 - L1MEc LINE L1 -4641 1755 1618 2148 131 129 5 chr1 31920791 31921172 -210743181 + MSTA LTR MaLR 1 428 0 602 235 54 34 chr1 31921172 31921245 -210743108 - L1MEc LINE L1 -4778 1618 1548 * 1072 241 98 25 chr1 31921238 31921637 -210742716 - L1MEc LINE L1 -5306 1090 663 1880 177 85 34 chr1 31921641 31921806 -210742547 + MLT1C LTR MaLR 6 161 -306 1762 164 11 0 chr1 31921806 31922069 -210742284 + AluJb SINE Alu 1 266 -46 1880 177 85 34 chr1 31922069 31922339 -210742014 + MLT1C LTR MaLR 161 463 -4 1655 288 26 17 chr1 31922352 31922880 -210741473 - L1MEc LINE L1 -5753 643 111 458 131 24 0 chr1 31922880 31922964 -210741389 + CT-rich Low_complexity Low_complexity 1 86 0 377 299 37 15 chr1 31923168 31923302 -210741051 - MIR SINE MIR -8 254 118 1080 187 72 96 chr1 31923314 31923688 -210740665 + MLT1A1 LTR MaLR 1 365 0 2836 221 89 76 chr1 31923692 31924709 -210739644 + MLT1A1-int LTR MaLR 5 1427 -308 2127 112 4 0 chr1 31924709 31924987 -210739366 - AluSg SINE Alu -12 298 20 2836 221 89 76 chr1 31924987 31925301 -210739052 + MLT1A1-int LTR MaLR 1427 1735 0 832 229 207 10 chr1 31925302 31925607 -210738746 + MLT1A1 LTR MaLR 1 365 0 268 216 18 81 chr1 31925687 31925798 -210738555 - L3 LINE CR1 -77 1500 1397 354 260 94 0 chr1 31926557 31926684 -210737669 - MIR SINE MIR -78 184 46 293 306 61 10 chr1 31926811 31926909 -210737444 + MER5B DNA MER1_type 1 103 -75 339 25 0 0 chr1 31927411 31927451 -210736902 + (CA)n Simple_repeat Simple_repeat 1 40 0 682 288 44 18 chr1 31928805 31929034 -210735319 - MIR SINE MIR -14 248 14 307 214 0 0 chr1 31929177 31929233 -210735120 - L2 LINE L2 -9 3304 3249 733 315 60 20 chr1 31929550 31929958 -210734395 + L1ME4a LINE L1 5475 5904 -217 1452 160 115 42 chr1 31929958 31930246 -210734107 + AluJb SINE Alu 1 309 -3 733 315 60 20 chr1 31930246 31930288 -210734065 + L1ME4a LINE L1 5904 5943 -178 1105 203 37 12 chr1 31930333 31930579 -210733774 - MIR SINE MIR 0 262 11 2355 144 59 0 chr1 31930715 31931119 -210733234 + MSTA LTR MaLR 1 428 0 525 275 79 61 chr1 31931214 31931556 -210732797 + L2 LINE L2 2839 3186 -86 540 351 43 0 chr1 31931592 31931823 -210732530 + MIR SINE MIR 21 261 -1 482 242 224 21 chr1 31931957 31932292 -210732061 + LTR33 LTR ERVL 7 409 -112 419 281 8 16 chr1 31932578 31932699 -210731654 + MIR SINE MIR 23 142 -66 304 298 74 0 chr1 31932827 31932948 -210731405 + L2 LINE L2 3167 3296 -17 257 253 0 80 chr1 31932990 31933065 -210731288 - L2 LINE L2 -44 3269 3201 400 314 31 16 chr1 31933417 31933608 -210730745 + LTR16C LTR ERVL 298 491 0 296 353 71 0 chr1 31934300 31934470 -210729883 - MIR SINE MIR -18 244 63 185 279 114 14 chr1 31934766 31934906 -210729447 - L3 LINE CR1 -352 1225 1072 186 162 0 27 chr1 31934912 31934949 -210729404 - L2 LINE L2 -20 3293 3258 568 257 40 7 chr1 31935042 31935194 -210729159 + L2 LINE L2 2890 3046 -267 210 300 38 0 chr1 31935211 31935291 -210729062 - L2 LINE L2 -201 3071 2989 184 369 25 8 chr1 31935258 31935380 -210728973 + L3 LINE CR1 1451 1574 -3 * 270 280 76 21 chr1 31936094 31936202 -210728151 + MIR SINE MIR 28 132 -76 615 291 66 22 chr1 31936312 31936477 -210727876 - MIR SINE MIR -23 239 60 1660 218 3 0 chr1 31936477 31936770 -210727583 + AluJo SINE Alu 1 294 -18 615 291 66 22 chr1 31936770 31936831 -210727522 - MIR SINE MIR -202 60 3 352 300 0 23 chr1 31936960 31937090 -210727263 + L2 LINE L2 2919 3045 -227 287 292 194 7 chr1 31938645 31938789 -210725564 + MIR3 SINE MIR 35 205 -3 606 220 2 0 chr1 31938851 31939288 -210725065 + (ATG)n Simple_repeat Simple_repeat 1 438 0 534 202 0 0 chr1 31939350 31939528 -210724825 + (ATG)n Simple_repeat Simple_repeat 1 178 0 241 312 43 0 chr1 31939636 31939729 -210724624 - MIR SINE MIR -83 179 83 584 139 7 0 chr1 31940468 31940581 -210723772 - L1MA8 LINE L1 -177 6114 5997 1716 176 4 0 chr1 31940590 31940857 -210723496 - AluSx SINE Alu -18 294 27 424 309 142 50 chr1 31940931 31941514 -210722839 + L2 LINE L2 2258 2894 -420 806 274 32 78 chr1 31941604 31942129 -210722224 + LTR33 LTR ERVL 21 521 0 192 210 16 97 chr1 31942199 31942261 -210722092 + L2 LINE L2 3165 3221 -92 375 322 16 8 chr1 31942688 31942809 -210721544 + MIR3 SINE MIR 11 132 -76 293 306 48 20 chr1 31943327 31943474 -210720879 - MIR SINE MIR -43 219 69 1938 115 7 4 chr1 31943988 31944258 -210720095 + AluSx SINE Alu 3 273 -39 234 0 0 0 chr1 31944258 31944284 -210720069 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 213 149 45 15 chr1 31944427 31944494 -210719859 + (TTAA)n Simple_repeat Simple_repeat 3 71 0 22 35 0 0 chr1 31944503 31944532 -210719821 + AT_rich Low_complexity Low_complexity 1 29 0 308 213 25 38 chr1 31944535 31944695 -210719658 + (TTAA)n Simple_repeat Simple_repeat 2 159 0 236 256 22 56 chr1 31944852 31944942 -210719411 + MIR3 SINE MIR 91 177 -31 832 252 68 0 chr1 31945443 31945677 -210718676 - MIR SINE MIR 0 262 13 3809 82 2 22 chr1 31945776 31946310 -210718043 - L1PA14 LINE L1 0 6161 5639 251 239 0 0 chr1 31946315 31946361 -210717992 + MER52C LTR ERV1 8 53 -1225 7596 175 79 37 chr1 31946655 31948194 -210716159 + MER52A LTR ERV1 55 1755 0 2725 133 150 7 chr1 31948194 31948797 -210715556 - L1P4 LINE L1 -527 5641 4877 1984 145 129 21 chr1 31948797 31949183 -210715170 + MSTA LTR MaLR 1 428 0 2725 133 150 7 chr1 31949183 31949339 -210715014 - L1P4 LINE L1 -1291 4877 4745 443 297 55 47 chr1 31949343 31949707 -210714646 + L2 LINE L2 2943 3309 -4 266 243 27 40 chr1 31949729 31949803 -210714550 + L2 LINE L2 3200 3272 0 246 320 13 59 chr1 31949983 31950092 -210714261 - MIR3 SINE MIR -27 181 79 2313 137 121 0 chr1 31950092 31950471 -210713882 - MSTC LTR MaLR -3 425 1 246 320 13 59 chr1 31950471 31950514 -210713839 - MIR3 SINE MIR -129 79 36 689 245 0 0 chr1 31950668 31950819 -210713534 - MIR SINE MIR -74 188 38 460 331 45 6 chr1 31952381 31952559 -210711794 - MIR SINE MIR -58 204 20 3958 250 98 54 chr1 31952559 31952931 -210711422 + L1MEc LINE L1 36 390 -5825 1942 97 78 0 chr1 31952931 31953200 -210711153 + AluSg SINE Alu 1 290 -20 3958 250 98 54 chr1 31953200 31953699 -210710654 + L1MEc LINE L1 390 865 -5350 2255 125 0 0 chr1 31953699 31954010 -210710343 + AluSq SINE Alu 1 311 -2 3958 250 98 54 chr1 31954010 31954283 -210710070 + L1MEc LINE L1 865 1124 -5091 2228 133 0 0 chr1 31954283 31954591 -210709762 + AluSx SINE Alu 3 310 -2 3958 250 98 54 chr1 31954591 31955343 -210709010 + L1MEc LINE L1 1124 1841 -4374 3192 165 30 7 chr1 31955343 31955881 -210708472 - MER44D DNA MER2_type 0 605 1 3958 250 98 54 chr1 31955881 31957013 -210707340 + L1MEc LINE L1 1841 3156 -3059 2335 168 20 9 chr1 31957084 31957524 -210706829 + MER65A LTR ERV1 1 445 0 732 249 52 81 chr1 31957524 31957893 -210706460 + MER65A-int LTR ERV1 5 362 -4509 2895 214 50 30 chr1 31957981 31958676 -210705677 + MER65A-int LTR ERV1 523 1231 -3640 225 222 97 56 chr1 31958840 31958912 -210705441 + MER51C LTR ERV1 341 415 -225 935 158 0 121 chr1 31958986 31959201 -210705152 + MER51C LTR ERV1 452 640 0 4354 172 105 53 chr1 31959201 31959691 -210704662 + MER65A-int LTR ERV1 1238 1701 -3170 237 65 0 0 chr1 31959691 31959722 -210704631 + (TG)n Simple_repeat Simple_repeat 2 32 0 4354 172 105 53 chr1 31959722 31960061 -210704292 + MER65A-int LTR ERV1 1701 2021 -2850 381 58 0 0 chr1 31960061 31960113 -210704240 + (TG)n Simple_repeat Simple_repeat 1 52 0 769 143 0 0 chr1 31960122 31960234 -210704119 - FLAM_C SINE Alu -17 116 5 4354 172 105 53 chr1 31960234 31960588 -210703765 + MER65A-int LTR ERV1 2028 2494 -2377 846 173 68 32 chr1 31960662 31960882 -210703471 + MER65A-int LTR ERV1 1516 1743 -6377 * 1309 177 88 101 chr1 31960863 31961468 -210702885 + MER65A-int LTR ERV1 1989 3493 -3105 725 158 84 58 chr1 31961735 31961925 -210702428 + MER65A-int LTR ERV1 3536 3730 -2868 2542 205 66 65 chr1 31962005 31963444 -210700909 + MER65A-int LTR ERV1 2469 3799 -1137 295 205 219 36 chr1 31963445 31963603 -210700750 + MER65A-int LTR ERV1 5216 5696 -728 650 226 60 74 chr1 31963615 31963857 -210700496 + MER65A-int LTR ERV1 3605 4530 -406 7372 6 1 0 chr1 31963867 31964730 -210699623 + L1HS LINE L1 5203 6066 -89 2655 223 30 13 chr1 31964837 31965461 -210698892 + MER65A-int LTR ERV1 4237 4871 0 1445 172 8 12 chr1 31965461 31965717 -210698636 + MER65A LTR ERV1 1 255 -190 217 179 0 0 chr1 31967385 31967424 -210696929 + MER5A DNA MER1_type 36 74 -115 237 224 17 17 chr1 31967513 31967571 -210696782 + CT-rich Low_complexity Low_complexity 1 58 0 246 200 89 67 chr1 31967827 31967917 -210696436 + MIR SINE MIR 37 128 -80 795 255 87 33 chr1 31968051 31968384 -210695969 + MLT1I LTR MaLR 3 353 -56 296 256 89 0 chr1 31968543 31968633 -210695720 - L2 LINE L2 -28 3244 3147 792 267 46 4 chr1 31968720 31968960 -210695393 + MIR SINE MIR 3 252 -10 306 281 35 0 chr1 31969009 31969123 -210695230 + MIR SINE MIR 46 163 -99 195 221 147 0 chr1 31969528 31969596 -210694757 - MIR SINE MIR -127 135 58 415 306 72 10 chr1 31969778 31969987 -210694366 + MIR SINE MIR 31 252 -10 514 298 48 0 chr1 31970144 31970332 -210694021 - MIR SINE MIR -20 242 46 2796 91 6 0 chr1 31970728 31971089 -210693264 + THE1B LTR MaLR 2 364 0 1540 194 39 0 chr1 31971334 31971613 -210692740 + AluJo SINE Alu 1 290 -22 189 0 0 0 chr1 31971614 31971635 -210692718 + (CA)n Simple_repeat Simple_repeat 2 22 0 4792 20 0 0 chr1 31972843 31973388 -210690965 - L1P LINE L1 -1650 4496 3952 1824 60 0 8 chr1 31973387 31973621 -210690732 + L1P LINE L1 4519 4750 -1396 * 7972 20 0 0 chr1 31973721 31975312 -210689041 + L1PA3 LINE L1 4563 6155 0 1894 147 3 32 chr1 31976496 31976809 -210687544 - AluJo SINE Alu -7 305 2 2170 118 0 3 chr1 31976815 31977111 -210687242 - AluSg SINE Alu -15 295 1 25456 74 11 1 chr1 31977128 31981279 -210683074 - L1PA6 LINE L1 -2 6467 2278 1896 162 0 7 chr1 31981278 31981586 -210682767 - L1PA6 LINE L1 -6152 309 4 * 230 331 57 46 chr1 31981816 31981991 -210682362 + LTR67 LTR ERVL 3 179 -378 1016 194 28 14 chr1 31982265 31982481 -210681872 + MIR SINE MIR 7 225 -37 320 275 17 42 chr1 31983134 31983254 -210681099 + L2 LINE L2 3155 3271 -1 344 301 145 0 chr1 31983266 31983459 -210680894 - MIR SINE MIR -14 248 28 323 317 46 100 chr1 31983476 31983936 -210680417 + L2 LINE L2 2825 3259 -13 514 291 75 0 chr1 31983950 31984149 -210680204 - MIR SINE MIR 0 262 49 219 69 0 0 chr1 31985339 31985368 -210678985 + MIR SINE MIR 115 143 -119 476 333 39 12 chr1 31986056 31986314 -210678039 - L2 LINE L2 -177 3095 2831 384 313 0 0 chr1 31986474 31986573 -210677780 + MIR SINE MIR 48 146 -62 198 0 0 0 chr1 31986597 31986619 -210677734 + (A)n Simple_repeat Simple_repeat 1 22 0 409 314 142 32 chr1 31986639 31987040 -210677313 - L2 LINE L2 0 3313 2869 12003 204 33 17 chr1 31987042 31990048 -210674305 + L1MB3 LINE L1 2468 5524 -743 791 147 0 28 chr1 31990048 31990225 -210674128 + (GGAA)n Simple_repeat Simple_repeat 1 172 0 3527 172 33 12 chr1 31990249 31990918 -210673435 + L1MB3 LINE L1 5498 6180 -3 835 221 47 17 chr1 31990935 31991170 -210673183 + L1M4 LINE L1 3844 4085 -2061 207 0 0 0 chr1 31991555 31991578 -210672775 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 213 227 45 0 chr1 31992117 31992183 -210672170 + (TA)n Simple_repeat Simple_repeat 2 70 0 369 292 159 0 chr1 31993025 31993220 -210671133 - L2 LINE L2 -1491 1823 1598 361 257 243 7 chr1 31993437 31993573 -210670780 - MIR3 SINE MIR -24 184 17 760 192 87 12 chr1 31994248 31994420 -210669933 + MIR SINE MIR 56 240 -22 313 192 68 0 chr1 31994613 31994686 -210669667 - LTR16C LTR ERVL -9 482 405 310 308 29 0 chr1 31994838 31994942 -210669411 - MIR SINE MIR -80 182 76 233 343 36 29 chr1 31995696 31995836 -210668517 + MIR3 SINE MIR 1 141 -67 255 284 159 0 chr1 31996068 31996156 -210668197 + L2 LINE L2 3168 3269 -3 325 245 20 20 chr1 31996180 31996282 -210668071 + MER5A DNA MER1_type 4 105 -84 205 259 87 32 chr1 31996432 31996617 -210667736 + L2 LINE L2 2701 2895 -419 3079 181 40 32 chr1 31996790 31997421 -210666932 + LTR27 LTR ERV1 1 636 0 191 187 55 143 chr1 31997948 31998039 -210666314 - MIR SINE MIR -81 181 99 312 269 56 9 chr1 31998245 31998353 -210666000 + MLT1K LTR MaLR 84 196 -392 515 225 289 8 chr1 31998355 31998462 -210665891 - L2 LINE L2 -105 3208 3132 1784 153 20 103 chr1 31998462 31998545 -210665808 + MLT1A1 LTR MaLR 1 89 -276 1569 111 43 0 chr1 31998545 31998752 -210665601 + AluSg/x SINE Alu 84 299 -13 1784 153 20 103 chr1 31998752 31998852 -210665501 + MLT1A1 LTR MaLR 89 196 -169 1719 171 0 11 chr1 31998852 31999139 -210665214 + AluJo SINE Alu 10 293 -19 1784 153 20 103 chr1 31999139 31999352 -210665001 + MLT1A1 LTR MaLR 196 365 0 515 225 289 8 chr1 31999352 31999633 -210664720 - L2 LINE L2 -181 3132 2706 733 221 49 66 chr1 31999645 31999809 -210664544 - MIR SINE MIR 0 262 102 4652 87 16 25 chr1 31999809 32000479 -210663874 + MER4A LTR ERV1 1 664 0 733 221 49 66 chr1 32000479 32000558 -210663795 - MIR SINE MIR -160 102 23 391 202 221 10 chr1 32000590 32000694 -210663659 - MIR SINE MIR -115 147 22 546 254 87 16 chr1 32003259 32003444 -210660909 - MIR SINE MIR -54 208 11 464 270 0 4 chr1 32003463 32003603 -210660750 - L3 LINE CR1 -115 1462 1263 2147 147 23 35 chr1 32003604 32004000 -210660353 + LTR45B LTR ERV1 3 393 -96 1428 222 118 26 chr1 32004345 32004835 -210659518 + MLT1H LTR MaLR 15 549 0 290 154 0 39 chr1 32005048 32005100 -210659253 - L2 LINE L2 0 3272 3223 298 147 191 15 chr1 32006613 32006681 -210657672 + L2 LINE L2 3233 3312 -1 252 289 56 67 chr1 32007098 32007278 -210657075 + MIR SINE MIR 14 191 -71 263 289 74 67 chr1 32008032 32008181 -210656172 - MIR3 SINE MIR -14 194 45 257 163 0 0 chr1 32008187 32008230 -210656123 + MIR SINE MIR 81 123 -85 353 254 103 113 chr1 32008518 32008703 -210655650 - MIR3 SINE MIR -10 198 16 310 325 141 25 chr1 32008840 32009003 -210655350 - MIR SINE MIR -77 185 4 457 264 9 0 chr1 32009061 32009167 -210655186 - MER81 DNA DNA -7 107 1 371 267 183 69 chr1 32009748 32009950 -210654403 + MIR SINE MIR 19 243 -19 1536 144 35 92 chr1 32009983 32010386 -210653967 - L1MA7 LINE L1 -5 6286 5907 2579 95 31 17 chr1 32010386 32010744 -210653609 + THE1B LTR MaLR 1 363 -1 230 307 100 7 chr1 32011046 32011186 -210653167 + MIR3 SINE MIR 55 207 -1 280 356 9 17 chr1 32011394 32011509 -210652844 + MIR SINE MIR 30 143 -65 263 280 93 17 chr1 32011977 32012095 -210652258 + L2 LINE L2 3012 3138 -175 1719 158 17 20 chr1 32012100 32012397 -210651956 - AluJb SINE Alu -14 298 3 1134 277 97 28 chr1 32012458 32013169 -210651184 - L2 LINE L2 0 3313 2546 414 0 0 0 chr1 32013786 32013832 -210650521 + (TG)n Simple_repeat Simple_repeat 2 47 0 324 290 57 16 chr1 32014036 32014160 -210650193 + MIR3 SINE MIR 66 194 -14 343 303 63 42 chr1 32014332 32014522 -210649831 - MIR SINE MIR -55 207 13 294 304 112 28 chr1 32015327 32015541 -210648812 + L2 LINE L2 2233 2464 -850 425 284 21 0 chr1 32015687 32015828 -210648525 + (TGAA)n Simple_repeat Simple_repeat 4 147 0 1848 165 0 3 chr1 32015961 32016246 -210648107 - AluJb SINE Alu -24 288 5 230 81 27 0 chr1 32016298 32016335 -210648018 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 284 276 98 41 chr1 32016884 32017007 -210647346 + MIR SINE MIR 22 151 -57 255 247 26 52 chr1 32017106 32017183 -210647170 + L2 LINE L2 3198 3272 0 440 92 0 0 chr1 32017424 32017489 -210646864 + Alu SINE Alu 241 305 -7 352 77 64 0 chr1 32017518 32017596 -210646757 + (TG)n Simple_repeat Simple_repeat 1 83 0 388 278 116 24 chr1 32018131 32018349 -210646004 + MIR3 SINE MIR 15 250 -12 294 228 90 78 chr1 32018679 32018842 -210645511 - MIR SINE MIR -58 150 5 434 282 25 35 chr1 32019301 32019529 -210644824 - L1MEd LINE L1 -861 1629 1219 1318 228 100 26 chr1 32019542 32020036 -210644317 - L1ME3A LINE L1 -2 6580 6029 * 1806 234 15 8 chr1 32020035 32020510 -210643843 - L1ME3A LINE L1 -3050 3514 3037 1123 290 71 34 chr1 32020518 32021262 -210643091 - L1ME3A LINE L1 -3925 2820 2049 1120 235 20 20 chr1 32021279 32021577 -210642776 - L1ME3A LINE L1 -5747 298 1 773 282 79 97 chr1 32021646 32022050 -210642303 - L1MEd LINE L1 -4979 1140 730 2219 127 0 0 chr1 32022050 32022349 -210642004 - AluSx SINE Alu -8 304 6 773 282 79 97 chr1 32022349 32022607 -210641746 - L1MEd LINE L1 -5389 730 497 1966 119 28 7 chr1 32022607 32022892 -210641461 + AluSg SINE Alu 1 291 -19 773 282 79 97 chr1 32022892 32023144 -210641209 - L1MEd LINE L1 -5622 497 242 3676 151 36 2 chr1 32023160 32023743 -210640610 - LTR26 LTR ERV1 0 603 1 231 313 43 0 chr1 32023999 32024114 -210640239 - L2 LINE L2 -976 2338 2219 551 254 23 0 chr1 32024306 32024436 -210639917 + MIR SINE MIR 60 192 -70 452 345 24 37 chr1 32024476 32024722 -210639631 - L2 LINE L2 -179 3093 2851 636 200 62 7 chr1 32025106 32025259 -210639094 - MIR SINE MIR -1 261 99 270 320 31 10 chr1 32025288 32025385 -210638968 + MIR SINE MIR 26 124 -84 321 331 102 0 chr1 32026384 32026550 -210637803 + MIR SINE MIR 35 217 -45 2115 132 22 20 chr1 32026663 32027020 -210637333 + THE1B LTR MaLR 1 358 -6 342 292 234 0 chr1 32027102 32027239 -210637114 + MIR SINE MIR 80 248 -14 363 306 76 7 chr1 32027431 32027575 -210636778 + L2 LINE L2 3160 3313 0 207 69 0 0 chr1 32028934 32028963 -210635390 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 591 299 117 36 chr1 32028974 32029358 -210634995 - L2 LINE L2 -24 3289 2875 864 261 25 25 chr1 32029381 32029622 -210634731 - MIR SINE MIR -18 244 4 268 256 6 6 chr1 32030137 32030305 -210634048 + (TG)n Simple_repeat Simple_repeat 1 168 0 414 212 0 22 chr1 32030361 32030545 -210633808 + (TG)n Simple_repeat Simple_repeat 1 180 0 477 231 4 15 chr1 32030604 32030885 -210633468 + (TG)n Simple_repeat Simple_repeat 1 277 0 498 287 194 35 chr1 32031693 32032091 -210632262 - L2 LINE L2 -25 3247 2789 825 149 8 0 chr1 32032568 32032689 -210631664 - FLAM_C SINE Alu -21 122 1 216 0 0 0 chr1 32032880 32032904 -210631449 + (A)n Simple_repeat Simple_repeat 1 24 0 530 248 105 66 chr1 32033058 32033423 -210630930 + MLT1I LTR MaLR 22 402 -7 291 292 68 10 chr1 32033922 32034069 -210630284 - MIR SINE MIR -21 187 33 520 258 80 18 chr1 32034079 32034242 -210630111 - MIR SINE MIR -70 192 20 497 274 56 17 chr1 32034387 32034566 -210629787 - MIR SINE MIR -31 231 46 217 284 225 6 chr1 32035400 32035553 -210628800 + MIR SINE MIR 5 190 -72 416 258 39 0 chr1 32035791 32035919 -210628434 + REP3 LTR ERV 1 133 -429 598 262 57 57 chr1 32035925 32036173 -210628180 + REP3 LTR ERV 268 515 -47 424 289 0 0 chr1 32036195 32036285 -210628068 + L2 LINE L2 3223 3312 -1 264 305 42 34 chr1 32036650 32036768 -210627585 + MER5A DNA MER1_type 47 165 -24 184 139 56 0 chr1 32036739 32036775 -210627578 - MER5B DNA MER1_type -125 53 16 * 206 259 52 44 chr1 32037363 32037498 -210626855 + L2 LINE L2 2848 2983 -289 360 274 105 16 chr1 32038159 32038283 -210626070 + MIR SINE MIR 108 242 -20 250 293 151 29 chr1 32038530 32038735 -210625618 + MLT1L LTR MaLR 170 399 -216 1363 221 39 49 chr1 32038845 32039235 -210625118 - MER58D DNA MER1_type 0 386 1 540 261 148 53 chr1 32040275 32040580 -210623773 + MLT1L LTR MaLR 170 519 -96 1363 221 39 49 chr1 32040580 32040970 -210623383 - MER58D DNA MER1_type 0 386 1 540 261 148 53 chr1 32040970 32041043 -210623310 + MLT1L LTR MaLR 519 584 -31 243 189 0 19 chr1 32041215 32041268 -210623085 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 275 214 26 26 chr1 32041979 32042041 -210622312 + CT-rich Low_complexity Low_complexity 4 65 -55 2479 87 0 0 chr1 32042041 32042351 -210622002 - AluY SINE Alu -1 310 1 1552 163 0 19 chr1 32042353 32042611 -210621742 - AluJo SINE Alu -18 294 42 275 214 26 26 chr1 32042611 32042662 -210621691 + CT-rich Low_complexity Low_complexity 65 120 0 562 278 145 39 chr1 32042675 32043082 -210621271 - L2 LINE L2 -14 3299 2850 181 289 84 104 chr1 32043090 32043339 -210621014 - L2 LINE L2 -211 3061 2818 408 292 231 20 chr1 32043426 32043629 -210620724 - MIR SINE MIR 0 262 18 1252 218 148 14 chr1 32043702 32044046 -210620307 - MSTD LTR MaLR -6 390 1 397 241 147 0 chr1 32044773 32044889 -210619464 + MIR SINE MIR 15 147 -115 416 143 65 0 chr1 32045343 32045420 -210618933 + MSTA LTR MaLR 1 82 -344 * 1932 157 107 62 chr1 32045405 32045837 -210618516 - MER66B LTR ERV1 -29 457 7 2064 112 26 40 chr1 32045862 32046210 -210618143 + MSTA LTR MaLR 86 428 0 204 381 60 0 chr1 32046210 32046294 -210618059 - MIR SINE MIR -169 93 5 224 214 60 0 chr1 32046910 32047078 -210617275 + (CCTG)n Simple_repeat Simple_repeat 3 180 0 235 336 145 8 chr1 32047256 32047491 -210616862 + L2 LINE L2 2543 2809 -505 379 292 10 0 chr1 32048304 32048400 -210615953 + MIR SINE MIR 37 133 -75 465 272 9 9 chr1 32048408 32048522 -210615831 - MER20 DNA MER1_type -2 217 104 424 209 68 0 chr1 32048538 32048686 -210615667 + (CCTG)n Simple_repeat Simple_repeat 3 160 0 459 219 67 0 chr1 32048721 32048885 -210615468 + (CCTG)n Simple_repeat Simple_repeat 1 175 0 272 200 59 0 chr1 32048896 32049066 -210615287 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 440 192 0 0 chr1 32049126 32049204 -210615149 - MER20 DNA MER1_type -135 84 7 243 167 0 0 chr1 32049743 32049809 -210614544 + (TG)n Simple_repeat Simple_repeat 2 67 0 466 189 81 9 chr1 32050049 32050160 -210614193 - L2 LINE L2 0 3313 3195 560 257 167 9 chr1 32050181 32050403 -210613950 - MIR SINE MIR 0 262 6 477 305 22 40 chr1 32050527 32050753 -210613600 - MIR SINE MIR 0 262 41 406 302 45 23 chr1 32051245 32051462 -210612891 + MIR SINE MIR 18 241 -21 221 409 1 34 chr1 32051879 32052025 -210612328 - MIR SINE MIR -68 140 20 274 244 372 6 chr1 32052189 32052361 -210611992 + MIR SINE MIR 13 247 -15 1377 94 0 0 chr1 32052361 32053228 -210611125 + (TGG)n Simple_repeat Simple_repeat 1 867 0 480 111 0 0 chr1 32053371 32053443 -210610910 + (TGG)n Simple_repeat Simple_repeat 3 74 0 277 207 218 0 chr1 32053512 32053599 -210610754 - MER91C DNA MER1_type -34 106 1 379 196 47 65 chr1 32053652 32053759 -210610594 + L2 LINE L2 3137 3241 -31 219 170 21 0 chr1 32054427 32054474 -210609879 - L2 LINE L2 -30 3242 3195 624 220 73 62 chr1 32054570 32054787 -210609566 - MIR SINE MIR -23 239 25 482 319 31 0 chr1 32055241 32055444 -210608909 + MLT1I LTR MaLR 2 255 -231 631 301 44 49 chr1 32055886 32056275 -210608078 - L2 LINE L2 0 3272 2886 269 226 0 32 chr1 32056419 32056481 -210607872 + L2 LINE L2 3207 3266 -6 1462 255 13 19 chr1 32057197 32057570 -210606783 - MLT1A2 LTR MaLR 0 374 4 565 309 106 0 chr1 32058080 32058297 -210606056 + MIR SINE MIR 23 262 0 806 242 15 19 chr1 32058439 32058656 -210605697 + MIR SINE MIR 5 213 -49 358 284 1 43 chr1 32058710 32058850 -210605503 - MIR SINE MIR -46 162 27 310 302 28 9 chr1 32059082 32059188 -210605165 - MIR SINE MIR -114 148 41 434 293 80 27 chr1 32059216 32059404 -210604949 - MIR SINE MIR -33 229 32 247 278 0 0 chr1 32060746 32060800 -210603553 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 284 289 133 0 chr1 32060939 32061029 -210603324 - MIR SINE MIR -70 192 91 566 217 7 22 chr1 32061900 32062038 -210602315 - MIR SINE MIR -115 147 12 453 293 0 8 chr1 32062470 32062603 -210601750 - MIR3 SINE MIR -36 172 41 481 230 97 9 chr1 32062740 32062853 -210601500 - L2 LINE L2 0 3313 3191 452 239 123 1 chr1 32063273 32063423 -210600930 + MIR3 SINE MIR 31 198 -10 261 226 183 11 chr1 32063661 32063754 -210600599 + MIR SINE MIR 37 145 -63 196 226 26 13 chr1 32063791 32063859 -210600494 + MIR SINE MIR 49 119 -89 698 333 55 10 chr1 32064326 32064729 -210599624 + L1MC4 LINE L1 5517 5937 -1871 422 297 177 55 chr1 32064954 32065264 -210599089 - L1ME4a LINE L1 -96 6025 5678 228 321 0 0 chr1 32065682 32065738 -210598615 - MIR SINE MIR -199 63 8 1951 125 3 23 chr1 32065954 32066257 -210598096 + AluSx SINE Alu 8 304 -8 922 279 52 18 chr1 32066645 32067153 -210597200 + L2 LINE L2 2563 3087 -226 2059 128 3 0 chr1 32067252 32067549 -210596804 + AluSq SINE Alu 1 298 -15 249 186 119 0 chr1 32067722 32067781 -210596572 - LTR31 LTR ERV1 -266 353 288 1690 174 61 14 chr1 32068832 32069177 -210595176 + MLT2D LTR ERVL 4 364 -50 2147 68 45 3 chr1 32069179 32069471 -210594882 + AluY SINE Alu 1 304 -7 396 0 0 0 chr1 32069490 32069534 -210594819 + (CA)n Simple_repeat Simple_repeat 2 45 0 307 209 9 114 chr1 32069534 32069639 -210594714 + L1MC4 LINE L1 6606 6699 -1343 266 167 56 0 chr1 32069642 32069696 -210594657 + MLT2D LTR ERVL 464 520 0 240 302 13 57 chr1 32070192 32070351 -210594002 + L2 LINE L2 2884 3035 -237 922 303 168 34 chr1 32070351 32070871 -210593482 + L1MEd LINE L1 2 451 -5859 1943 125 32 0 chr1 32070871 32071152 -210593201 + AluSc SINE Alu 1 290 -19 922 303 168 34 chr1 32071152 32071998 -210592355 + L1MEd LINE L1 451 1585 -4725 1052 266 109 107 chr1 32072433 32072818 -210591535 + L1MEd LINE L1 2702 3085 -3044 1814 158 0 10 chr1 32072818 32073110 -210591243 + AluJo SINE Alu 3 291 -21 1052 266 109 107 chr1 32073110 32074437 -210589916 + L1MEd LINE L1 3085 4417 -1712 812 112 8 24 chr1 32074730 32074855 -210589498 + FLAM_C SINE Alu 1 123 -20 249 210 71 6 chr1 32074887 32074977 -210589376 - MIR SINE MIR -76 132 32 456 311 94 30 chr1 32075054 32075560 -210588793 - L2 LINE L2 -47 3225 2694 389 217 182 14 chr1 32075956 32076099 -210588254 - MLT1K LTR MaLR -281 307 141 198 314 83 69 chr1 32076265 32076469 -210587884 + L2 LINE L2 2993 3199 -73 8299 170 107 21 chr1 32076893 32078508 -210585845 + MER52A LTR ERV1 1 1754 -1 460 273 20 107 chr1 32078543 32078768 -210585585 + L1MC4a LINE L1 5610 5645 -476 2117 131 0 3 chr1 32078768 32079081 -210585272 + AluSq SINE Alu 1 312 -1 460 273 20 107 chr1 32079081 32079247 -210585106 + L1MC4a LINE L1 5645 5824 -297 355 281 126 32 chr1 32079406 32079652 -210584701 + L1ME4a LINE L1 5658 5926 -195 366 303 59 7 chr1 32079752 32079904 -210584449 + MIR SINE MIR 48 207 -55 389 222 22 0 chr1 32080736 32080826 -210583527 - L2 LINE L2 -17 3296 3205 1398 136 4 4 chr1 32081013 32081276 -210583077 - AluJo SINE Alu 0 346 84 221 284 68 34 chr1 32081477 32081565 -210582788 - L2 LINE L2 -8 3305 3215 360 0 0 0 chr1 32081908 32081948 -210582405 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 206 30 91 0 chr1 32081948 32081981 -210582372 + T-rich Low_complexity Low_complexity 2 37 0 251 273 0 0 chr1 32082266 32082332 -210582021 + MIR SINE MIR 81 146 -62 575 322 77 0 chr1 32082473 32082706 -210581647 + MIR SINE MIR 2 252 -10 2027 263 69 24 chr1 32084696 32085450 -210578903 + L2 LINE L2 2057 2844 -470 267 79 0 0 chr1 32085546 32085584 -210578769 + (GA)n Simple_repeat Simple_repeat 1 38 0 1478 122 54 0 chr1 32086400 32086621 -210577732 - AluSx SINE Alu -23 289 57 218 333 44 0 chr1 32086728 32086818 -210577535 + L2 LINE L2 2966 3059 -213 188 196 0 20 chr1 32087688 32087739 -210576614 + CT-rich Low_complexity Low_complexity 2 51 0 207 0 0 0 chr1 32088444 32088467 -210575886 + (T)n Simple_repeat Simple_repeat 1 23 0 182 378 94 0 chr1 32088722 32088902 -210575451 - MIR SINE MIR -15 247 51 305 349 35 18 chr1 32089102 32089271 -210575082 + MIR SINE MIR 20 191 -71 583 125 0 0 chr1 32089295 32089383 -210574970 + FRAM SINE Alu 43 130 -46 193 214 0 0 chr1 32089532 32089574 -210574779 + MIR SINE MIR 49 90 -172 185 278 102 0 chr1 32090031 32090139 -210574214 - MIR SINE MIR -80 182 64 571 171 13 38 chr1 32090355 32090597 -210573756 + GA-rich Low_complexity Low_complexity 1 235 0 367 297 16 16 chr1 32091094 32091222 -210573131 + MIR SINE MIR 20 147 -115 262 241 37 32 chr1 32091920 32092048 -210572305 - MIR SINE MIR -94 114 6 276 292 0 18 chr1 32092936 32093049 -210571304 + (TGAA)n Simple_repeat Simple_repeat 1 111 0 477 202 52 9 chr1 32093113 32093258 -210571095 - MIR SINE MIR -48 160 11 454 307 122 67 chr1 32093727 32093981 -210570372 + L3 LINE CR1 1309 1576 -1 228 211 0 0 chr1 32094402 32094440 -210569913 + polypurine Low_complexity Low_complexity 1 38 0 194 283 19 0 chr1 32095708 32095761 -210568592 + L2 LINE L2 3214 3267 -46 228 211 0 0 chr1 32096766 32096804 -210567549 + polypurine Low_complexity Low_complexity 1 38 0 591 289 38 34 chr1 32096811 32097045 -210567308 - MIR SINE MIR -18 244 10 336 255 174 8 chr1 32097122 32097281 -210567072 + MIR SINE MIR 17 192 -56 1080 122 2 9 chr1 32097420 32097816 -210566537 + (TCCA)n Simple_repeat Simple_repeat 2 568 0 240 167 0 0 chr1 32097828 32097876 -210566477 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 347 334 102 34 chr1 32098080 32098536 -210565817 - L2 LINE L2 -179 3093 2616 677 333 171 26 chr1 32098814 32100107 -210564246 + L2 LINE L2 1291 2770 -544 363 331 81 49 chr1 32100284 32100537 -210563816 + L2 LINE L2 2978 3242 -30 1169 62 23 0 chr1 32100537 32100713 -210563640 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 363 331 81 49 chr1 32100713 32100743 -210563610 + L2 LINE L2 3242 3270 -2 579 104 80 0 chr1 32100749 32100912 -210563441 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 450 302 73 0 chr1 32101551 32101743 -210562610 - MIR SINE MIR -24 238 33 261 57 0 0 chr1 32102135 32102170 -210562183 + (CAGCC)n Simple_repeat Simple_repeat 4 38 0 383 300 80 34 chr1 32102333 32102596 -210561757 + L2 LINE L2 2004 2278 -1036 328 335 65 0 chr1 32103309 32103366 -210560987 + MIR SINE MIR 95 147 -115 3075 139 20 16 chr1 32103366 32103861 -210560492 + LOR1a LTR ERV1 1 497 0 328 335 65 0 chr1 32103861 32103958 -210560395 + MIR SINE MIR 147 259 -3 824 104 0 0 chr1 32104033 32104148 -210560205 - AluSg/x SINE Alu -12 298 184 332 323 77 10 chr1 32105274 32105469 -210558884 - MIR SINE MIR -33 229 22 308 117 100 0 chr1 32106063 32106123 -210558230 + L1MA9 LINE L1 6208 6273 -39 25 0 0 0 chr1 32106139 32106164 -210558189 + AT_rich Low_complexity Low_complexity 1 25 0 301 300 86 30 chr1 32106267 32106439 -210557914 + MIR3 SINE MIR 3 180 -62 404 345 75 18 chr1 32106608 32106834 -210557519 + L2 LINE L2 3075 3313 0 820 257 30 45 chr1 32106938 32107203 -210557150 + MIR SINE MIR 2 262 0 231 333 29 29 chr1 32107343 32107448 -210556905 + MIR SINE MIR 27 131 -131 301 311 41 49 chr1 32107560 32107682 -210556671 + L2 LINE L2 3151 3271 -1 281 272 62 0 chr1 32107853 32107934 -210556419 + MIR SINE MIR 88 173 -89 388 354 33 23 chr1 32107971 32108186 -210556167 - L2 LINE L2 -469 2845 2629 288 310 97 41 chr1 32108253 32108402 -210555951 + MIR SINE MIR 5 159 -63 247 323 57 24 chr1 32110346 32110470 -210553883 + L2 LINE L2 3145 3272 0 289 331 90 14 chr1 32110540 32110685 -210553668 + MIR SINE MIR 47 202 -60 372 164 0 0 chr1 32111064 32111131 -210553222 + (CA)n Simple_repeat Simple_repeat 1 67 0 417 280 131 6 chr1 32112304 32112472 -210551881 - MIR SINE MIR -62 200 12 483 296 179 0 chr1 32112516 32112695 -210551658 + MIR SINE MIR 50 260 -2 182 276 48 103 chr1 32113160 32113305 -210551048 - MIR SINE MIR -6 256 120 256 239 30 15 chr1 32113409 32113476 -210550877 + MIR3 SINE MIR 97 164 -44 262 315 176 24 chr1 32114086 32114251 -210550102 - MIR SINE MIR -19 243 54 270 224 95 86 chr1 32114842 32114958 -210549395 + L2 LINE L2 3189 3305 -8 258 234 104 39 chr1 32114973 32115050 -210549303 - MIR SINE MIR -57 205 124 2480 42 3 10 chr1 32115340 32115649 -210548704 - AluY SINE Alu -4 307 1 452 256 24 36 chr1 32116083 32116251 -210548102 + C-rich Low_complexity Low_complexity 6 171 0 311 237 27 0 chr1 32116270 32116420 -210547933 + C-rich Low_complexity Low_complexity 1 154 0 253 238 0 113 chr1 32117588 32117668 -210546685 + MIR3 SINE MIR 97 167 -41 355 178 137 0 chr1 32118162 32118235 -210546118 + MIR SINE MIR 66 148 -114 597 281 60 0 chr1 32118604 32118789 -210545564 - MIR SINE MIR -54 208 13 351 275 162 0 chr1 32118904 32119046 -210545307 + MIR SINE MIR 49 213 -49 355 228 65 0 chr1 32119672 32119764 -210544589 + MIR SINE MIR 86 183 -79 424 248 59 0 chr1 32120203 32120304 -210544049 + MIR SINE MIR 46 152 -110 209 264 8 139 chr1 32120483 32120612 -210543741 - MIR3 SINE MIR -16 192 81 245 247 164 0 chr1 32120631 32120704 -210543649 + MIR SINE MIR 63 147 -115 735 221 77 6 chr1 32121923 32122104 -210542249 + MIR SINE MIR 2 195 -67 364 276 230 7 chr1 32122101 32122253 -210542100 - MIR SINE MIR -57 205 20 * 482 252 11 16 chr1 32122461 32122597 -210541756 + MIR3 SINE MIR 15 150 -81 255 159 0 0 chr1 32122695 32122739 -210541614 + L1ME2 LINE L1 6112 6155 -9 496 253 13 39 chr1 32122868 32123022 -210541331 - MIR SINE MIR -67 195 46 410 289 47 0 chr1 32123262 32123390 -210540963 + L2 LINE L2 3138 3271 -1 236 309 64 18 chr1 32124614 32124724 -210539629 + MIR SINE MIR 28 142 -66 1912 171 7 0 chr1 32124811 32125120 -210539233 - AluJb SINE Alu -1 311 1 384 177 45 30 chr1 32125150 32125253 -210539100 - MLT1I LTR MaLR -2 407 319 271 240 10 10 chr1 32125571 32125671 -210538682 + CT-rich Low_complexity Low_complexity 3 102 0 195 217 22 0 chr1 32125798 32125844 -210538509 - L3b LINE CR1 -2 1581 1535 773 266 49 4 chr1 32126203 32126429 -210537924 + LTR16C LTR ERVL 227 462 -29 188 357 40 50 chr1 32127276 32127475 -210536878 + L2 LINE L2 2177 2373 -941 189 320 27 13 chr1 32127701 32127776 -210536577 + MIR SINE MIR 49 124 -84 297 240 100 10 chr1 32128554 32128654 -210535699 + MIR SINE MIR 32 140 -68 182 324 108 10 chr1 32128865 32128967 -210535386 + L2 LINE L2 2695 2806 -508 322 245 20 87 chr1 32129057 32129253 -210535100 + MLT1K LTR MaLR 386 568 -20 322 328 215 21 chr1 32129360 32129695 -210534658 + L2 LINE L2 2832 3231 -41 320 252 25 0 chr1 32129839 32129958 -210534395 + (TG)n Simple_repeat Simple_repeat 2 123 0 379 258 19 6 chr1 32130338 32130497 -210533856 + (TG)n Simple_repeat Simple_repeat 2 162 0 1500 241 146 25 chr1 32132215 32132729 -210531624 + MLT1K LTR MaLR 13 588 0 184 254 17 51 chr1 32132729 32132788 -210531565 - MIR SINE MIR -115 147 91 409 332 105 18 chr1 32132802 32133031 -210531322 + L2 LINE L2 2938 3186 -86 198 103 0 0 chr1 32133094 32133123 -210531230 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 485 280 30 0 chr1 32133125 32133257 -210531096 - MIR3 SINE MIR -14 194 59 420 315 8 0 chr1 32133616 32133743 -210530610 - L3 LINE CR1 -81 1496 1369 435 210 32 51 chr1 32134432 32134530 -210529823 + L1ME4a LINE L1 5967 6062 -59 1873 171 0 7 chr1 32134530 32134840 -210529513 - AluJo SINE Alu -4 308 1 435 210 32 51 chr1 32134840 32134898 -210529455 + L1ME4a LINE L1 6062 6120 -1 664 325 80 64 chr1 32134899 32135336 -210529017 - L3 LINE CR1 -187 1390 947 288 212 40 111 chr1 32135363 32135462 -210528891 - MIR SINE MIR -139 123 32 895 264 62 65 chr1 32136025 32136238 -210528115 + LTR16A1 LTR ERVL 27 239 -218 2109 228 114 4 chr1 32136238 32136747 -210527606 + MLT1F1 LTR MaLR 1 565 -2 895 264 62 65 chr1 32136747 32136965 -210527388 + LTR16A1 LTR ERVL 239 457 0 262 211 0 0 chr1 32136967 32137019 -210527334 - MIR SINE MIR -141 121 70 268 268 0 14 chr1 32137325 32137396 -210526957 - MIR SINE MIR -119 89 20 272 308 107 35 chr1 32137635 32137804 -210526549 - MIR SINE MIR -12 250 70 191 244 211 0 chr1 32138298 32138388 -210525965 - MIR SINE MIR -66 196 88 * 281 271 57 14 chr1 32138361 32138501 -210525852 - L2 LINE L2 -214 3058 2913 181 123 14 68 chr1 32139049 32139122 -210525231 + GA-rich Low_complexity Low_complexity 5 73 0 517 142 71 0 chr1 32139169 32139324 -210525029 + GA-rich Low_complexity Low_complexity 2 167 0 * 773 234 0 4 chr1 32139306 32139554 -210524799 + G-rich Low_complexity Low_complexity 1 247 0 197 207 0 35 chr1 32139548 32139606 -210524747 + A-rich Low_complexity Low_complexity 1 56 0 * 555 141 0 0 chr1 32139611 32139703 -210524650 + (G)n Simple_repeat Simple_repeat 1 92 0 196 380 0 14 chr1 32140414 32140485 -210523868 + L2 LINE L2 3104 3173 -99 429 247 140 7 chr1 32141368 32141518 -210522835 - L2 LINE L2 -423 2891 2722 263 314 36 36 chr1 32141605 32141742 -210522611 - MIR3 SINE MIR -57 151 15 840 285 0 5 chr1 32142002 32142216 -210522137 + MIR SINE MIR 2 214 -48 341 237 144 0 chr1 32142446 32142543 -210521810 + MIR SINE MIR 148 258 -4 282 56 0 0 chr1 32142625 32142661 -210521692 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 249 278 287 9 chr1 32142757 32142872 -210521481 - L3 LINE CR1 -5 1572 1426 382 399 66 7 chr1 32142925 32143196 -210521157 - L3 LINE CR1 -499 1078 792 494 224 124 58 chr1 32143197 32143420 -210520933 + MIR SINE MIR 8 248 -14 321 284 57 74 chr1 32143716 32143892 -210520461 + L3 LINE CR1 1391 1563 -14 256 246 0 0 chr1 32143986 32144043 -210520310 - MIR SINE MIR -87 121 65 258 270 51 34 chr1 32144140 32144318 -210520035 - Charlie7 DNA MER1_type -17 2595 2415 444 283 17 50 chr1 32144492 32144689 -210519664 - MIR SINE MIR -59 149 3 223 278 48 75 chr1 32144854 32145020 -210519333 - MIR SINE MIR -70 192 34 432 286 164 9 chr1 32145109 32145329 -210519024 - MIR SINE MIR -6 256 3 229 311 126 0 chr1 32145408 32145527 -210518826 + MIR3 SINE MIR 15 148 -60 536 256 108 24 chr1 32146010 32146220 -210518133 + MIR SINE MIR 19 248 -14 294 381 46 0 chr1 32146430 32146603 -210517750 - L2 LINE L2 -192 3080 2900 298 301 28 42 chr1 32146655 32146798 -210517555 - MIR3 SINE MIR -66 142 2 286 298 14 21 chr1 32147188 32147329 -210517024 + (ATGGTG)n Simple_repeat Simple_repeat 6 145 0 448 306 41 24 chr1 32148143 32148313 -210516040 + MIR SINE MIR 28 200 -62 1220 280 51 11 chr1 32148382 32148835 -210515518 + L1ME3A LINE L1 5700 6170 0 237 201 288 50 chr1 32148999 32149138 -210515215 - L2 LINE L2 -251 3062 2891 299 119 169 0 chr1 32149753 32149812 -210514541 + MER2 DNA MER2_type 277 345 0 254 168 142 0 chr1 32150020 32150114 -210514239 + MIR SINE MIR 33 147 -61 2111 121 0 0 chr1 32150786 32151076 -210513277 + AluSx SINE Alu 1 290 -22 314 290 40 40 chr1 32151158 32151282 -210513071 - MIR SINE MIR -79 183 60 220 304 49 29 chr1 32151359 32151461 -210512892 - L2 LINE L2 -216 3056 2953 257 325 68 8 chr1 32151555 32151672 -210512681 + MIR3 SINE MIR 64 187 -21 343 325 146 26 chr1 32151715 32152057 -210512296 + L2 LINE L2 2826 3208 -64 1679 99 126 4 chr1 32152149 32152411 -210511942 - AluSx SINE Alu -18 294 1 3187 218 45 11 chr1 32152445 32153244 -210511109 + L1MC3 LINE L1 6937 7762 -23 1948 157 0 13 chr1 32153579 32153892 -210510461 + AluJo SINE Alu 1 309 -3 743 191 88 52 chr1 32154506 32154700 -210509653 + MER20 DNA MER1_type 1 201 -18 596 312 57 19 chr1 32155031 32155345 -210509008 + MER102b DNA MER1_type 16 341 0 440 202 75 0 chr1 32155365 32155459 -210508894 - MIR SINE MIR -60 148 48 195 257 43 29 chr1 32155585 32155655 -210508698 + L3 LINE CR1 1504 1574 -3 970 232 24 24 chr1 32155702 32155948 -210508405 - MIR SINE MIR -4 258 13 210 297 11 44 chr1 32156049 32156140 -210508213 + L3b LINE CR1 1340 1427 -156 182 306 0 0 chr1 32156271 32156320 -210508033 - MIR SINE MIR -104 104 56 322 220 44 22 chr1 32156802 32156893 -210507460 - MIR SINE MIR -58 150 58 505 311 36 18 chr1 32157323 32157545 -210506808 - MIR SINE MIR -5 257 32 856 251 5 0 chr1 32157575 32157766 -210506587 - MIR SINE MIR -43 219 28 496 207 14 35 chr1 32158982 32159127 -210505226 - MER113 DNA MER1_type? -348 173 32 429 272 44 68 chr1 32159144 32159320 -210505033 + MIR SINE MIR 34 206 -56 216 333 0 14 chr1 32159366 32159438 -210504915 - MIR SINE MIR -108 100 30 2068 203 100 24 chr1 32159654 32160123 -210504230 + MLT1D LTR MaLR 1 505 0 368 291 29 0 chr1 32160214 32160317 -210504036 + MIR SINE MIR 62 167 -95 186 286 8 0 chr1 32161061 32161122 -210503231 - MIR SINE MIR -87 121 59 188 325 75 0 chr1 32161920 32162000 -210502353 + MIR SINE MIR 106 191 -71 195 42 0 0 chr1 32162269 32162293 -210502060 + (GAA)n Simple_repeat Simple_repeat 2 25 0 438 273 114 23 chr1 32162385 32162605 -210501748 + MLT1L LTR MaLR 303 542 -73 538 280 15 0 chr1 32162643 32162775 -210501578 - L2 LINE L2 -46 3267 3134 287 345 7 56 chr1 32162808 32162950 -210501403 + MIR3 SINE MIR 48 182 -26 312 27 0 0 chr1 32163324 32163361 -210500992 + (CA)n Simple_repeat Simple_repeat 1 37 0 1767 176 10 0 chr1 32163840 32164136 -210500217 - AluJo SINE Alu -13 299 1 362 198 126 63 chr1 32164411 32164522 -210499831 - L2 LINE L2 0 3313 3196 444 346 22 22 chr1 32164773 32164952 -210499401 + MIR SINE MIR 9 187 -75 241 304 18 0 chr1 32165606 32165689 -210498664 - MIR SINE MIR -90 172 89 334 345 27 66 chr1 32165913 32166171 -210498182 - L1ME4a LINE L1 -5 6116 5869 189 0 0 0 chr1 32166186 32166207 -210498146 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2043 98 11 0 chr1 32166218 32166492 -210497861 - AluSq SINE Alu -36 277 1 1266 304 49 16 chr1 32166494 32167070 -210497283 - L1MC4a LINE L1 -1958 5850 5256 2414 82 3 0 chr1 32167131 32167435 -210496918 - AluSx SINE Alu -7 305 1 225 127 44 0 chr1 32167823 32167868 -210496485 + MIR SINE MIR 102 149 -59 227 206 0 48 chr1 32167981 32168044 -210496309 - L2 LINE L2 -205 3067 3008 401 272 6 74 chr1 32168123 32168285 -210496068 - MIR SINE MIR -66 196 46 305 237 86 11 chr1 32169050 32169143 -210495210 - MIR SINE MIR -88 120 21 1542 144 11 29 chr1 32169219 32169496 -210494857 + AluJo SINE Alu 35 306 -6 251 219 45 77 chr1 32169523 32169627 -210494726 + MIR3 SINE MIR 79 157 -51 23 0 0 0 chr1 32169917 32169940 -210494413 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr1 32170030 32170057 -210494296 + (CA)n Simple_repeat Simple_repeat 1 27 0 879 263 177 7 chr1 32170123 32170911 -210493442 + L1MC4 LINE L1 6824 7904 -138 606 122 0 0 chr1 32171061 32171143 -210493210 - AluJ/FRAM SINE Alu -14 298 217 2088 136 0 3 chr1 32171153 32171454 -210492899 - AluJb SINE Alu -12 300 1 921 148 0 0 chr1 32171454 32171589 -210492764 - AluJo SINE Alu -177 135 1 259 294 71 0 chr1 32171786 32171912 -210492441 + MIR3 SINE MIR 49 183 -25 321 208 75 47 chr1 32171915 32172021 -210492332 + MIR SINE MIR 33 141 -121 1495 153 52 22 chr1 32172877 32173145 -210491208 + AluJb SINE Alu 1 276 -36 438 69 0 0 chr1 32173151 32173209 -210491144 + (GGAGA)n Simple_repeat Simple_repeat 5 62 0 1798 131 39 23 chr1 32175255 32175543 -210488810 + AluSx SINE Alu 1 296 -16 1455 0 0 32 chr1 32175543 32175729 -210488624 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 1798 131 39 23 chr1 32175729 32175746 -210488607 + AluSx SINE Alu 296 311 -1 215 81 97 32 chr1 32175753 32175815 -210488538 + GA-rich Low_complexity Low_complexity 1 66 0 611 259 25 0 chr1 32176375 32176533 -210487820 - MIR SINE MIR -71 191 30 268 338 140 6 chr1 32176500 32176657 -210487696 + MIR SINE MIR 20 197 -65 * 520 190 344 0 chr1 32177621 32177784 -210486569 + MIR SINE MIR 21 239 -23 558 256 39 118 chr1 32177813 32178168 -210486185 + MLT1K LTR MaLR 97 423 -165 446 266 53 2 chr1 32178288 32178421 -210485932 - MIR SINE MIR -42 166 28 601 273 53 38 chr1 32178526 32178735 -210485618 + MIR SINE MIR 48 259 -3 263 285 36 7 chr1 32178831 32178964 -210485389 - MIR SINE MIR -61 147 13 335 233 14 0 chr1 32179193 32179266 -210485087 + MIR SINE MIR 84 157 -105 4274 164 5 28 chr1 32179298 32179337 -210485016 + L1MB3 LINE L1 5433 5471 -712 1882 149 0 32 chr1 32179337 32179646 -210484707 - AluJb SINE Alu -13 299 1 4274 164 5 28 chr1 32179646 32180354 -210483999 + L1MB3 LINE L1 5471 6193 10 2816 117 9 47 chr1 32180354 32180441 -210483912 + MSTC LTR MaLR 1 90 -338 1866 98 0 128 chr1 32180441 32180500 -210483853 - AluSx SINE Alu 0 312 247 207 0 0 0 chr1 32180500 32180523 -210483830 + (GAGTG)n Simple_repeat Simple_repeat 5 27 0 1866 98 0 128 chr1 32180523 32180551 -210483802 - AluSx SINE Alu -65 247 217 228 67 0 0 chr1 32180551 32180581 -210483772 + (GAGTG)n Simple_repeat Simple_repeat 5 34 0 1866 98 0 128 chr1 32180581 32180609 -210483744 - AluSx SINE Alu -95 217 187 360 0 0 0 chr1 32180609 32180649 -210483704 + (GAGTG)n Simple_repeat Simple_repeat 5 44 0 1866 98 0 128 chr1 32180649 32180889 -210483464 - AluSx SINE Alu -125 187 1 2816 117 9 47 chr1 32180889 32181245 -210483108 + MSTC LTR MaLR 90 427 -1 4274 164 5 28 chr1 32181245 32181257 -210483096 + L1MB3 LINE L1 6192 6176 -7 216 308 112 35 chr1 32181282 32181425 -210482928 - L2 LINE L2 -246 3026 2873 344 357 63 34 chr1 32181776 32182134 -210482219 - L1MCa LINE L1 -2784 3642 1173 393 309 62 62 chr1 32183261 32183455 -210480898 - MIR3 SINE MIR 0 208 15 309 314 17 17 chr1 32184028 32184146 -210480207 - MIR SINE MIR -50 212 95 302 270 35 43 chr1 32184223 32184338 -210480015 - MIR SINE MIR -70 192 79 1833 106 48 4 chr1 32184641 32184944 -210479409 - AluSx SINE Alu 0 315 1 228 326 75 14 chr1 32184999 32185146 -210479207 + MLT1J LTR MaLR 253 408 -103 2304 89 10 0 chr1 32185268 32185572 -210478781 - AluSx SINE Alu -5 307 1 298 363 105 0 chr1 32185580 32185770 -210478583 + MIR SINE MIR 53 262 0 309 265 45 37 chr1 32186335 32186517 -210477836 - MIR3 SINE MIR -60 202 15 268 221 147 21 chr1 32186498 32186593 -210477760 + MIR3 SINE MIR 56 162 -46 * 1728 116 101 0 chr1 32186597 32186874 -210477479 + AluSq SINE Alu 1 305 -8 360 357 76 0 chr1 32186923 32187080 -210477273 + MIR SINE MIR 9 177 -85 2290 63 28 0 chr1 32187621 32187908 -210476445 - AluSx SINE Alu -17 295 1 21 0 0 0 chr1 32187914 32187935 -210476418 + AT_rich Low_complexity Low_complexity 1 21 0 697 285 311 10 chr1 32188022 32189315 -210475038 + L2 LINE L2 1805 3313 0 412 288 61 24 chr1 32189318 32189530 -210474823 - L2 LINE L2 -249 3023 2804 350 189 111 11 chr1 32189921 32190011 -210474342 - MIR3 SINE MIR -22 186 88 275 257 63 87 chr1 32190146 32190352 -210474001 - MLT1K LTR MaLR -349 239 39 636 249 3 0 chr1 32191095 32191444 -210472909 + GA-rich Low_complexity Low_complexity 1 350 0 1580 278 64 40 chr1 32191630 32192159 -210472194 - MLT1F LTR MaLR 0 542 1 2156 133 0 0 chr1 32192213 32192521 -210471832 - AluSx SINE Alu -4 308 1 538 293 169 24 chr1 32193366 32193656 -210470697 - L3 LINE CR1 -2 1575 1244 1716 241 103 26 chr1 32193712 32194371 -210469982 + L1ME1 LINE L1 5427 6136 -30 312 267 0 4 chr1 32194576 32194654 -210469699 - MIR SINE MIR -113 95 26 602 313 6 11 chr1 32194897 32195073 -210469280 + MIR SINE MIR 16 190 -72 658 265 6 24 chr1 32195141 32195311 -210469042 - MIR SINE MIR -75 187 21 2199 108 7 0 chr1 32195576 32195881 -210468472 + AluSx SINE Alu 1 307 -5 301 238 20 30 chr1 32195977 32196033 -210468320 + L1ME3 LINE L1 6062 6118 -44 2151 103 0 3 chr1 32196033 32196334 -210468019 + AluSx SINE Alu 1 300 -12 301 238 20 30 chr1 32196334 32196378 -210467975 + L1ME3 LINE L1 6118 6161 -1 2447 64 0 6 chr1 32196392 32196705 -210467648 + AluY SINE Alu 1 311 0 2240 81 24 0 chr1 32197009 32197307 -210467046 + AluY SINE Alu 1 305 -6 615 281 33 67 chr1 32197669 32197939 -210466414 + MIR SINE MIR 2 262 0 1043 208 160 14 chr1 32197989 32198056 -210466297 + MER102b DNA MER1_type 5 61 -1367 189 0 0 0 chr1 32198056 32198077 -210466276 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1043 208 160 14 chr1 32198077 32198302 -210466051 + MER102b DNA MER1_type 61 340 -1 295 310 21 56 chr1 32198315 32198457 -210465896 - MIR3 SINE MIR -47 161 25 650 229 20 0 chr1 32198546 32198699 -210465654 + MIR SINE MIR 92 247 -15 292 238 133 114 chr1 32198765 32198936 -210465417 - MIR SINE MIR -62 146 9 * 443 303 37 32 chr1 32198931 32199119 -210465234 - L2 LINE L2 -1 3312 3124 906 191 6 0 chr1 32199239 32199396 -210464957 + FRAM SINE Alu 1 158 -18 330 202 20 10 chr1 32199396 32199495 -210464858 + GA-rich Low_complexity Low_complexity 1 100 0 376 361 75 14 chr1 32199612 32199931 -210464422 + HAL1 LINE L1 982 1289 -1218 235 102 20 20 chr1 32199931 32199980 -210464373 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 316 300 96 23 chr1 32200018 32200238 -210464115 - L2 LINE L2 -217 3055 2820 306 286 124 10 chr1 32200300 32200493 -210463860 - MIR SINE MIR -21 241 23 216 97 0 0 chr1 32200699 32200730 -210463623 + (CA)n Simple_repeat Simple_repeat 2 32 0 251 323 0 40 chr1 32200781 32200880 -210463473 + HERV30 LTR ERV1 3799 3893 -4364 471 18 0 0 chr1 32201182 32201238 -210463115 + (CA)n Simple_repeat Simple_repeat 2 57 0 237 283 94 9 chr1 32201497 32201603 -210462750 + MIR3 SINE MIR 90 204 -4 446 294 18 76 chr1 32202104 32202216 -210462137 - MIR SINE MIR -47 215 98 1428 158 44 57 chr1 32202216 32202330 -210462023 + AluJo SINE Alu 1 115 -197 2170 112 3 3 chr1 32202330 32202643 -210461710 + AluSq SINE Alu 1 313 0 1428 158 44 57 chr1 32202643 32202661 -210461692 + AluJo SINE Alu 115 132 -180 2100 121 3 0 chr1 32202661 32202959 -210461394 + AluSp SINE Alu 1 299 -14 1428 158 44 57 chr1 32202959 32203141 -210461212 + AluJo SINE Alu 132 312 0 446 294 18 76 chr1 32203141 32203222 -210461131 - MIR SINE MIR -164 98 25 673 274 95 17 chr1 32203407 32203648 -210460705 - MIR SINE MIR 0 262 3 290 339 24 8 chr1 32203889 32203975 -210460378 + MIR SINE MIR 60 150 -112 1436 169 17 0 chr1 32203975 32204206 -210460147 - MER46A DNA MER2_type 0 236 2 290 339 24 8 chr1 32204206 32204243 -210460110 + MIR SINE MIR 150 185 -77 687 259 48 5 chr1 32204438 32204627 -210459726 + MIR SINE MIR 64 260 -2 384 261 97 57 chr1 32204718 32204894 -210459459 - L2 LINE L2 -166 3106 2924 605 186 148 60 chr1 32205552 32205735 -210458618 + MIR SINE MIR 13 211 -51 209 263 126 21 chr1 32206125 32206220 -210458133 - MIR SINE MIR -118 144 40 197 318 35 24 chr1 32206371 32206456 -210457897 + MIR SINE MIR 41 126 -136 374 250 102 23 chr1 32206564 32206692 -210457661 - MIR SINE MIR -74 188 51 785 256 65 24 chr1 32206766 32207012 -210457341 - MIR SINE MIR 0 262 7 37 23 0 0 chr1 32207153 32207197 -210457156 + GC_rich Low_complexity Low_complexity 1 44 0 269 310 132 0 chr1 32207501 32207630 -210456723 - MIR SINE MIR 0 262 117 351 200 0 27 chr1 32207953 32208028 -210456325 - L2 LINE L2 -213 3059 2987 321 310 127 6 chr1 32208041 32208199 -210456154 + MIR SINE MIR 38 214 -48 237 169 13 104 chr1 32208323 32208400 -210455953 - MIR SINE MIR -130 132 63 2217 113 7 0 chr1 32208401 32208710 -210455643 + AluSx SINE Alu 1 311 -1 740 324 69 6 chr1 32208835 32209196 -210455157 - L1ME LINE L1 -354 5767 5384 458 326 99 27 chr1 32209334 32209628 -210454725 + L2 LINE L2 2953 3267 -46 372 272 11 0 chr1 32210229 32210321 -210454032 - MER74C LTR ERVL -358 102 10 1899 127 3 3 chr1 32211072 32211356 -210452997 + AluSx SINE Alu 21 304 -8 342 282 203 12 chr1 32211690 32211853 -210452500 + MIR SINE MIR 20 213 -49 524 256 78 17 chr1 32211920 32212100 -210452253 + MIR3 SINE MIR 17 207 -1 2026 119 0 3 chr1 32212252 32212564 -210451789 + AluSx SINE Alu 1 311 0 351 0 0 0 chr1 32213185 32213224 -210451129 + (TG)n Simple_repeat Simple_repeat 2 40 0 318 347 92 26 chr1 32213448 32213945 -210450408 + L2 LINE L2 2555 3091 -181 25 0 0 0 chr1 32214429 32214454 -210449899 + GC_rich Low_complexity Low_complexity 1 25 0 189 312 190 47 chr1 32215236 32215489 -210448864 - L2 LINE L2 -1 3271 2983 268 307 45 0 chr1 32215674 32215762 -210448591 + L2 LINE L2 3217 3308 -5 238 327 81 31 chr1 32215824 32216084 -210448269 - L2 LINE L2 -739 2575 2303 2292 57 3 10 chr1 32216171 32216497 -210447856 + AluY SINE Alu 1 311 0 420 206 52 0 chr1 32216561 32216658 -210447695 + MIR SINE MIR 34 135 -73 265 273 10 61 chr1 32217270 32217369 -210446984 + L2 LINE L2 3179 3272 0 754 315 24 4 chr1 32217632 32217659 -210446694 + MIR SINE MIR 7 32 -230 1971 137 3 0 chr1 32217659 32217951 -210446402 + AluSx SINE Alu 1 293 -19 754 315 24 4 chr1 32217951 32218174 -210446179 + MIR SINE MIR 32 262 0 514 233 98 37 chr1 32218310 32218473 -210445880 + MER5B DNA MER1_type 1 173 -5 738 189 61 28 chr1 32218486 32218666 -210445687 + MER5A DNA MER1_type 1 186 -3 197 247 101 45 chr1 32218788 32218877 -210445476 - MIR SINE MIR -44 218 125 219 285 51 21 chr1 32219507 32219601 -210444752 + MIR SINE MIR 20 115 -93 219 313 42 0 chr1 32220138 32220234 -210444119 + L2 LINE L2 2745 2844 -470 382 277 12 64 chr1 32220402 32220605 -210443748 - L1M LINE L1 -769 5405 5212 196 347 31 77 chr1 32220637 32220859 -210443494 + L2 LINE L2 2275 2486 -828 401 298 105 0 chr1 32220859 32220983 -210443370 - L1ME3A LINE L1 -17 6153 6017 402 246 16 8 chr1 32220988 32221116 -210443237 - L1MC4 LINE L1 -1339 6983 1995 352 302 47 0 chr1 32221086 32221172 -210443181 - L1MC4 LINE L1 -1339 6983 6894 * 606 251 68 87 chr1 32221172 32221394 -210442959 - L1ME3A LINE L1 -214 5956 5744 2143 95 17 0 chr1 32221394 32221688 -210442665 - AluSg SINE Alu -11 299 1 606 251 68 87 chr1 32221688 32221879 -210442474 - L1ME3A LINE L1 -426 5744 5551 335 275 46 55 chr1 32221875 32221983 -210442370 - L1ME3A LINE L1 -2695 3451 3344 * 2317 51 40 0 chr1 32221983 32222279 -210442074 - AluY SINE Alu -3 308 1 335 275 46 55 chr1 32222279 32222388 -210441965 - L1ME3A LINE L1 -2802 3344 3236 195 42 0 0 chr1 32222610 32222634 -210441719 + (CA)n Simple_repeat Simple_repeat 1 24 0 402 213 0 0 chr1 32223006 32223086 -210441267 - MIR SINE MIR -117 145 66 375 303 16 25 chr1 32223137 32223259 -210441094 - MIR SINE MIR -133 129 9 218 301 18 9 chr1 32223348 32223461 -210440892 - L2 LINE L2 -255 3017 2904 206 370 10 10 chr1 32224152 32224252 -210440101 + MIR SINE MIR 40 139 -123 619 284 57 39 chr1 32224295 32224524 -210439829 - MIR SINE MIR 0 262 30 843 306 164 14 chr1 32224596 32225521 -210438832 - L2 LINE L2 -93 3220 2150 268 207 11 11 chr1 32225523 32225610 -210438743 + GA-rich Low_complexity Low_complexity 3 89 0 194 287 23 58 chr1 32226274 32226361 -210437992 + MIR SINE MIR 71 154 -108 194 114 0 45 chr1 32226465 32226509 -210437844 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 2037 102 48 0 chr1 32226590 32226885 -210437468 + AluSq SINE Alu 1 309 -4 299 219 0 8 chr1 32226897 32227020 -210437333 + GA-rich Low_complexity Low_complexity 1 122 0 550 220 102 99 chr1 32227172 32227604 -210436749 + L1ME4a LINE L1 5547 5979 -142 388 301 6 43 chr1 32227713 32227876 -210436477 - L3b LINE CR1 -253 1330 1174 1964 122 17 11 chr1 32228101 32228388 -210435965 + AluSx SINE Alu 1 289 -23 203 152 0 0 chr1 32330458 32330491 -210333862 + CT-rich Low_complexity Low_complexity 4 36 0 2325 90 0 6 chr1 32330837 32331148 -210333205 + AluSc SINE Alu 1 309 0 209 333 53 61 chr1 32331993 32332107 -210332246 - L2 LINE L2 0 3313 3201 * 216 375 38 0 chr1 32332103 32332237 -210332116 + L2 LINE L2 2876 3017 -296 499 231 139 29 chr1 32332489 32332662 -210331691 + MIR SINE MIR 1 192 -70 4648 245 10 24 chr1 32332915 32334289 -210330064 + L1PA15-16 LINE L1 1710 3064 -3785 426 292 101 34 chr1 32335274 32335483 -210328870 - MIR SINE MIR -32 230 8 181 393 47 0 chr1 32335898 32336005 -210328348 - L2 LINE L2 -995 2319 2208 21 43 0 0 chr1 32336416 32336439 -210327914 + AT_rich Low_complexity Low_complexity 1 23 0 1657 224 51 23 chr1 32336886 32337320 -210327033 - MLT1C LTR MaLR 0 467 22 300 268 65 8 chr1 32338566 32338689 -210325664 - L1MC/D LINE L1 -1993 5815 5686 8725 61 110 11 chr1 32338738 32339978 -210324375 + L1P LINE L1 1 1362 -4784 207 69 0 0 chr1 32340078 32340107 -210324246 + (A)n Simple_repeat Simple_repeat 1 29 0 885 205 0 0 chr1 32340117 32340288 -210324065 + FRAM SINE Alu 1 165 -11 26 57 0 0 chr1 32340646 32340681 -210323672 + AT_rich Low_complexity Low_complexity 1 35 0 2509 71 0 0 chr1 32340681 32340992 -210323361 - AluY SINE Alu 0 311 1 790 196 6 0 chr1 32340999 32341167 -210323186 - L1MC/D LINE L1 -1094 5052 4884 * 836 235 66 12 chr1 32341160 32341403 -210322950 + L1M4 LINE L1 4562 4817 -1329 3945 155 24 27 chr1 32343870 32344833 -210319520 + L1MA8 LINE L1 5058 6022 -269 2229 102 3 10 chr1 32344838 32345141 -210319212 - AluSx SINE Alu -11 301 1 686 322 20 25 chr1 32345437 32345682 -210318671 + LTR16A LTR ERVL 207 450 0 24 53 0 0 chr1 32346343 32346381 -210317972 + AT_rich Low_complexity Low_complexity 1 38 0 2054 163 109 0 chr1 32346687 32347092 -210317261 + ERVL LTR ERVL 3704 4152 -1612 1432 141 5 0 chr1 32347074 32347287 -210317066 + ERVL LTR ERVL 4974 5187 -577 * 482 229 30 15 chr1 32348611 32348742 -210315611 + MER94 DNA DNA 1 133 -1 3001 159 33 28 chr1 32349140 32349465 -210314888 - MER73 LTR ERVL -19 625 294 315 0 0 0 chr1 32349465 32349500 -210314853 + (TC)n Simple_repeat Simple_repeat 2 36 0 3001 159 33 28 chr1 32349500 32349779 -210314574 - MER73 LTR ERVL -350 294 18 595 85 160 0 chr1 32351883 32351977 -210312376 - THE1C LTR MaLR -266 109 1 7813 21 0 0 chr1 32352001 32352981 -210311372 - L1PA3 LINE L1 0 6155 5176 2793 158 22 10 chr1 32353163 32353670 -210310683 + L1PA15 LINE L1 5652 6164 -1 560 270 38 21 chr1 32353726 32354015 -210310338 + HsTC2 DNA Tc2 1540 1833 -65 181 232 161 18 chr1 32354193 32354249 -210310104 - MER5B DNA MER1_type -109 69 6 336 238 78 93 chr1 32354620 32354813 -210309540 + L1M4 LINE L1 1185 1374 -5475 893 158 27 38 chr1 32355391 32355595 -210308758 + THE1C LTR MaLR 171 375 0 2335 75 16 3 chr1 32356088 32356394 -210307959 + AluY SINE Alu 1 310 -1 491 243 51 6 chr1 32356754 32356931 -210307422 - L1M4 LINE L1 -743 5403 5219 1031 245 57 48 chr1 32356946 32357383 -210306970 + L1M4 LINE L1 5384 5824 -1024 194 328 0 0 chr1 32357422 32357486 -210306867 + MIR SINE MIR 166 229 -33 56 16 0 0 chr1 32358052 32358115 -210306238 + GC_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr1 32358688 32358709 -210305644 + AT_rich Low_complexity Low_complexity 1 21 0 303 28 0 0 chr1 32358848 32358884 -210305469 + (TG)n Simple_repeat Simple_repeat 2 37 0 5819 206 29 21 chr1 32358896 32360152 -210304201 + MST-int LTR MaLR 1 1266 -385 21 57 0 0 chr1 32360341 32360376 -210303977 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr1 32361224 32361254 -210303099 + GC_rich Low_complexity Low_complexity 1 30 0 2479 171 40 6 chr1 32362904 32363377 -210300976 + LTR44 LTR ERV1 31 519 0 415 134 37 24 chr1 32363397 32363479 -210300874 - MER67D LTR ERV1 -427 87 5 386 276 120 126 chr1 32364992 32365467 -210298886 + L1M4c LINE L1 471 1078 -5771 425 307 24 10 chr1 32366723 32366928 -210297425 - L1ME LINE L1 -454 5712 5505 536 310 113 8 chr1 32366931 32367331 -210297022 + L1M4c LINE L1 1677 2118 -4732 485 283 111 51 chr1 32367387 32367740 -210296613 + HsTC2a DNA Tc2 5 378 -366 2247 52 13 0 chr1 32367740 32368046 -210296307 + L1P LINE L1 3758 4067 -2079 1509 211 95 19 chr1 32369063 32369494 -210294859 - L1ME1 LINE L1 -5 6161 5698 8741 38 3 2 chr1 32369627 32370772 -210293581 + L1P LINE L1 2131 3276 -2870 4127 93 5 8 chr1 32370879 32371522 -210292831 + L1P LINE L1 1545 2185 -3961 307 272 79 79 chr1 32371524 32371789 -210292564 + L1M2 LINE L1 862 1126 -5723 1835 172 18 3 chr1 32471960 32472031 -210192322 + Tigger3(Golem) DNA MER2_type 2693 2761 -267 1710 178 0 25 chr1 32472031 32472351 -210192002 - AluJo SINE Alu 0 312 1 1835 172 18 3 chr1 32472351 32472610 -210191743 + Tigger3(Golem) DNA MER2_type 2761 3028 0 2197 86 0 10 chr1 32473448 32473791 -210190562 - AluY SINE Alu 0 311 1 1201 181 25 149 chr1 32473795 32474128 -210190225 - L1MC5 LINE L1 -30 7931 7705 1603 135 0 4 chr1 32474128 32474365 -210189988 + AluJb SINE Alu 61 296 -16 1201 181 25 149 chr1 32474365 32474634 -210189719 - L1MC5 LINE L1 -256 7705 7404 249 334 35 4 chr1 32474778 32474897 -210189456 - MIR SINE MIR -32 176 51 620 241 187 1 chr1 32475514 32475703 -210188650 - MIR SINE MIR 0 262 41 199 269 19 0 chr1 32475790 32475842 -210188511 - MIR SINE MIR -110 152 100 239 308 51 0 chr1 32476104 32476182 -210188171 - MIR3 SINE MIR -49 159 78 2041 130 0 16 chr1 32476558 32476866 -210187487 - AluSx SINE Alu -9 303 1 216 362 96 10 chr1 32476950 32477149 -210187204 + L3 LINE CR1 1256 1471 -106 569 276 87 1 chr1 32477310 32477520 -210186833 - MIR SINE MIR -32 230 5 253 41 0 61 chr1 32477903 32477952 -210186401 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 234 211 35 0 chr1 32481938 32481995 -210182358 - MIR SINE MIR -46 216 158 515 224 143 0 chr1 32482009 32482156 -210182197 - MER104 DNA Tc2 -6 174 7 298 220 201 1 chr1 32482163 32482267 -210182086 - MIR SINE MIR -62 146 35 181 250 0 0 chr1 32483052 32483092 -210181261 - L2 LINE L2 -23 3249 3210 * 512 255 68 25 chr1 32483086 32483247 -210181106 - MIR SINE MIR -83 179 12 560 264 67 14 chr1 32484129 32484337 -210180016 + MIR SINE MIR 29 247 -15 553 343 33 0 chr1 32484434 32484647 -210179706 - MIR SINE MIR -27 235 16 392 297 153 12 chr1 32485712 32485988 -210178365 - L1ME4a LINE L1 -22 6099 5734 721 231 0 0 chr1 32486241 32486375 -210177978 + MER94 DNA DNA 1 134 0 779 232 0 12 chr1 32487221 32487389 -210176964 - MER58A DNA MER1_type -15 209 44 1937 132 7 4 chr1 32487389 32487699 -210176654 + AluSx SINE Alu 1 311 0 1548 192 0 45 chr1 32488565 32488873 -210175480 - AluJo SINE Alu -18 294 1 1506 118 9 0 chr1 32488878 32489106 -210175247 - AluSg/x SINE Alu 0 310 81 759 198 127 19 chr1 32489109 32489377 -210174976 - L1M4 LINE L1 -941 5205 4909 2011 235 42 35 chr1 32489380 32489711 -210174642 - L1M4 LINE L1 -1679 4467 4140 1176 149 36 85 chr1 32489711 32489959 -210174394 + MER46A DNA MER2_type 1 236 0 2011 235 42 35 chr1 32489959 32490168 -210174185 - L1M4 LINE L1 -2006 4140 3920 2141 117 0 0 chr1 32490168 32490475 -210173878 - AluY SINE Alu -4 307 1 2011 235 42 35 chr1 32490475 32490583 -210173770 - L1M4 LINE L1 -2226 3920 3814 270 136 0 0 chr1 32490778 32490822 -210173531 + (CA)n Simple_repeat Simple_repeat 2 45 0 289 303 139 0 chr1 32491456 32491578 -210172775 - MIR SINE MIR -19 243 105 428 252 32 32 chr1 32492590 32492713 -210171640 + MIR SINE MIR 61 183 -79 305 267 23 29 chr1 32492816 32492961 -210171392 - MIR SINE MIR -66 196 54 516 247 108 6 chr1 32493205 32493363 -210170990 + MIR SINE MIR 31 204 -58 390 276 10 0 chr1 32493428 32493526 -210170827 - MIR3 SINE MIR -17 191 93 267 362 26 20 chr1 32493700 32493852 -210170501 + MIR3 SINE MIR 41 193 -15 459 299 9 0 chr1 32493873 32494034 -210170319 + L1ME4a LINE L1 5683 5848 -292 249 224 153 20 chr1 32494176 32494274 -210170079 + MIR SINE MIR 63 173 -89 326 286 121 13 chr1 32494337 32494568 -210169785 + L1ME4a LINE L1 5861 6116 -5 227 267 170 22 chr1 32495186 32495321 -210169032 + L2 LINE L2 2848 3002 -270 277 246 0 0 chr1 32495338 32495395 -210168958 - L2 LINE L2 -12 3301 3245 237 283 131 0 chr1 32495596 32495695 -210168658 - MIR SINE MIR -70 192 81 549 258 147 20 chr1 32495870 32496068 -210168285 - MIR SINE MIR -20 242 20 197 333 30 0 chr1 32496411 32496510 -210167843 + MIR SINE MIR 52 153 -109 283 282 73 0 chr1 32496738 32496862 -210167491 + L2 LINE L2 3136 3268 -4 252 271 56 19 chr1 32496906 32497013 -210167340 + MIR3 SINE MIR 68 178 -30 727 272 24 5 chr1 32498135 32498354 -210165999 + MIR SINE MIR 5 227 -35 246 309 127 9 chr1 32498348 32498458 -210165895 + MIR SINE MIR 66 188 -74 * 3277 171 41 28 chr1 32498754 32499114 -210165239 + L1MB8 LINE L1 5461 5815 -363 2157 113 14 0 chr1 32499114 32499406 -210164947 + AluSq SINE Alu 1 296 -17 3277 171 41 28 chr1 32499406 32499748 -210164605 + L1MB8 LINE L1 5815 6172 -6 293 174 159 0 chr1 32499771 32499840 -210164513 - MIR SINE MIR -135 127 48 2017 102 88 0 chr1 32500681 32500964 -210163389 + AluSg SINE Alu 1 308 -2 208 218 40 89 chr1 32501523 32501624 -210162729 - MIR SINE MIR -62 146 51 554 160 11 17 chr1 32502341 32502522 -210161831 + (CA)n Simple_repeat Simple_repeat 1 180 0 438 222 42 21 chr1 32502524 32502668 -210161685 + (CCCA)n Simple_repeat Simple_repeat 1 147 0 491 197 6 0 chr1 32502669 32502847 -210161506 + (CA)n Simple_repeat Simple_repeat 1 179 0 330 196 0 0 chr1 32502858 32502965 -210161388 + (CA)n Simple_repeat Simple_repeat 1 107 0 505 279 123 31 chr1 32503965 32504291 -210160062 + L2 LINE L2 2952 3307 -6 526 239 72 0 chr1 32504615 32504753 -210159600 + MIR SINE MIR 94 241 -21 331 300 54 0 chr1 32504808 32504938 -210159415 + MIR SINE MIR 108 244 -18 192 182 0 0 chr1 32505288 32505332 -210159021 + (CA)n Simple_repeat Simple_repeat 1 44 0 432 286 101 28 chr1 32505427 32505605 -210158748 - MIR SINE MIR -19 243 53 214 324 27 0 chr1 32505666 32505740 -210158613 - MIR SINE MIR -110 152 77 217 170 21 21 chr1 32505799 32505846 -210158507 - MIR SINE MIR -111 151 105 232 128 0 64 chr1 32505883 32505930 -210158423 + (CCCCCA)n Simple_repeat Simple_repeat 5 48 0 290 234 78 0 chr1 32506037 32506114 -210158239 + MIR SINE MIR 67 149 -113 240 227 8 172 chr1 32506112 32506183 -210158170 - MIR SINE MIR -3 259 217 * 2232 99 0 3 chr1 32506183 32506475 -210157878 - AluSc SINE Alu -14 295 5 240 227 8 172 chr1 32506475 32506531 -210157822 - MIR SINE MIR -45 217 153 411 289 36 36 chr1 32507221 32507387 -210156966 - MIR SINE MIR -89 173 8 181 237 119 17 chr1 32507737 32507796 -210156557 + L2 LINE L2 3191 3255 -58 1984 146 0 3 chr1 32510493 32510787 -210153566 + AluSx SINE Alu 1 293 -19 212 264 46 46 chr1 32510995 32511082 -210153271 - MIR3 SINE MIR -9 199 113 269 280 70 70 chr1 32511247 32511461 -210152892 - L2 LINE L2 -155 3117 2904 1789 161 0 4 chr1 32511529 32511796 -210152557 + AluSx SINE Alu 30 295 -17 534 306 8 0 chr1 32511985 32512145 -210152208 + MIR3 SINE MIR 3 166 -42 241 253 40 13 chr1 32512180 32512255 -210152098 + MIR3 SINE MIR 117 193 -15 851 259 63 0 chr1 32512512 32512717 -210151636 + MIR SINE MIR 28 245 -17 187 321 0 0 chr1 32513118 32513174 -210151179 + L2 LINE L2 3002 3057 -215 2296 120 0 0 chr1 32513831 32514132 -210150221 - AluSg SINE Alu -6 304 4 2152 101 14 0 chr1 32514134 32514420 -210149933 - AluSg1 SINE Alu -19 290 1 269 245 0 0 chr1 32514620 32514673 -210149680 + L2 LINE L2 3214 3266 -6 410 167 13 0 chr1 32514751 32514829 -210149524 - LTR5 LTR ERVK -889 80 2 655 303 25 0 chr1 32514863 32515061 -210149292 + MIR SINE MIR 59 261 -1 186 328 52 0 chr1 32515081 32515139 -210149214 + L2 LINE L2 3119 3179 -93 209 262 0 0 chr1 32515826 32515887 -210148466 + MIR SINE MIR 60 120 -142 545 185 127 46 chr1 32516617 32516790 -210147563 - MIR SINE MIR -56 206 20 244 241 90 45 chr1 32517696 32517829 -210146524 - L2 LINE L2 0 3272 3134 321 246 17 42 chr1 32518499 32518617 -210145736 - MIR3 SINE MIR -86 122 8 * 743 173 16 103 chr1 32518590 32518692 -210145661 + MIR SINE MIR 46 126 -136 1937 143 14 3 chr1 32518692 32518985 -210145368 + AluSx SINE Alu 1 296 -16 743 173 16 103 chr1 32518985 32519067 -210145286 + MIR SINE MIR 126 214 -48 205 191 0 0 chr1 32519226 32519268 -210145085 + T-rich Low_complexity Low_complexity 1 42 0 240 252 97 19 chr1 32520259 32520362 -210143991 + MIR SINE MIR 19 129 -133 188 333 40 13 chr1 32521099 32521174 -210143179 - MIR3 SINE MIR -129 79 3 268 324 56 9 chr1 32521592 32521700 -210142653 + MIR3 SINE MIR 46 158 -50 373 222 103 16 chr1 32521861 32521987 -210142366 + MIR SINE MIR 45 181 -81 2300 104 0 10 chr1 32522600 32522897 -210141456 + AluSx SINE Alu 6 299 -13 457 202 75 28 chr1 32523340 32523499 -210140854 + MER31-int LTR ERV1 1044 1392 -394 2181 103 7 14 chr1 32523527 32523817 -210140536 - AluSx SINE Alu -24 288 1 251 143 0 43 chr1 32523817 32523887 -210140466 + MER31-int LTR ERV1 1137 1203 -3733 395 272 0 22 chr1 32523892 32523984 -210140369 + L1MC4 LINE L1 6614 6703 -1339 971 214 52 32 chr1 32524091 32524408 -210139945 - MER31-int LTR ERV1 -553 4383 4148 2370 209 91 79 chr1 32524411 32524705 -210139648 - MER31-int LTR ERV1 -1170 5161 4872 2288 76 7 40 chr1 32524705 32525009 -210139344 - AluY SINE Alu -17 294 1 2370 209 91 79 chr1 32525009 32525920 -210138433 - MER31-int LTR ERV1 -1459 4872 3973 1691 110 165 4 chr1 32525920 32526174 -210138179 + AluSx SINE Alu 1 295 -17 2370 209 91 79 chr1 32526174 32526654 -210137699 - MER31-int LTR ERV1 -2358 3973 2061 1492 208 13 36 chr1 32526656 32526964 -210137389 - AluJb SINE Alu -11 301 1 24 0 0 0 chr1 32526964 32526988 -210137365 + AT_rich Low_complexity Low_complexity 1 24 0 1590 160 0 11 chr1 32526988 32527263 -210137090 - AluSx SINE Alu 0 312 41 706 154 62 46 chr1 32527600 32527730 -210136623 - FLAM_C SINE Alu -10 133 2 22 0 0 0 chr1 32527733 32527755 -210136598 + AT_rich Low_complexity Low_complexity 1 22 0 364 252 233 0 chr1 32528066 32528225 -210136128 - MIR SINE MIR 0 262 67 2038 134 6 22 chr1 32528606 32528920 -210135433 - AluSx SINE Alu -1 311 3 1357 261 74 16 chr1 32530622 32531198 -210133155 + L1M4 LINE L1 3362 3896 -2250 185 192 13 90 chr1 32534170 32534248 -210130105 - L2 LINE L2 -1259 2055 1984 251 273 7 60 chr1 32534714 32534864 -210129489 + GA-rich Low_complexity Low_complexity 1 142 0 970 130 0 0 chr1 32535226 32535357 -210128996 - AluJb SINE Alu -181 131 1 2204 77 0 31 chr1 32535377 32535664 -210128689 + AluY SINE Alu 1 278 -33 198 71 0 0 chr1 32535665 32535693 -210128660 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 238 115 0 0 chr1 32535708 32535760 -210128593 + L1MA2 LINE L1 6110 6161 -143 2464 72 0 10 chr1 32535994 32536298 -210128055 + AluY SINE Alu 1 301 -10 1010 161 19 0 chr1 32536314 32536475 -210127878 + AluJb SINE Alu 140 303 -9 183 279 27 12 chr1 32536760 32536844 -210127509 - MIR SINE MIR -68 140 61 248 273 15 0 chr1 32537295 32537361 -210126992 + C-rich Low_complexity Low_complexity 5 71 0 530 250 85 17 chr1 32537548 32537724 -210126629 + MIR3 SINE MIR 7 194 -14 1691 156 6 68 chr1 32537980 32538301 -210126052 - AluJb SINE Alu -11 301 1 492 221 221 0 chr1 32538364 32538495 -210125858 + MER69A DNA AcHobo 1 160 -17 197 288 100 0 chr1 32538794 32538874 -210125479 + MIR SINE MIR 27 114 -94 499 257 29 0 chr1 32539477 32539617 -210124736 + MIR SINE MIR 1 144 -118 325 302 0 0 chr1 32539726 32539832 -210124521 + MIR SINE MIR 155 260 -2 1274 112 6 0 chr1 32540359 32540529 -210123824 - AluY SINE Alu -126 185 15 734 197 0 0 chr1 32540545 32540677 -210123676 - FLAM_C SINE Alu 0 133 2 417 194 83 46 chr1 32540679 32540787 -210123566 - AluJo SINE Alu -167 145 34 761 134 8 30 chr1 32540904 32541038 -210123315 - FLAM_C SINE Alu -1 132 2 2239 127 0 0 chr1 32541075 32541409 -210122944 + AluSx SINE Alu 1 312 0 317 231 124 0 chr1 32541410 32541531 -210122822 + L1M4 LINE L1 2463 2598 -3548 1646 185 45 0 chr1 32541543 32541830 -210122523 + AluJo SINE Alu 9 308 -4 2418 82 13 0 chr1 32541832 32542137 -210122216 + AluY SINE Alu 1 309 -2 229 277 73 39 chr1 32542163 32542215 -210122138 + L1M4 LINE L1 2859 2908 -3238 2385 96 3 0 chr1 32542215 32542517 -210121836 + AluSx SINE Alu 1 303 -9 229 277 73 39 chr1 32542517 32542724 -210121629 + L1M4 LINE L1 2908 3127 -3019 486 148 0 34 chr1 32542967 32543055 -210121298 + AluJ/FLAM SINE Alu 2 86 -226 493 224 43 0 chr1 32543055 32543171 -210121182 - AluSg/x SINE Alu -109 203 83 485 204 0 0 chr1 32543175 32543310 -210121043 - AluJb SINE Alu 0 325 191 468 51 0 0 chr1 32543328 32543387 -210120966 + (TA)n Simple_repeat Simple_repeat 2 60 0 2168 139 3 3 chr1 32543390 32543700 -210120653 - AluSg SINE Alu 0 310 1 658 223 0 0 chr1 32543835 32543974 -210120379 + AluJb SINE Alu 137 275 -37 2234 92 0 24 chr1 32543986 32544279 -210120074 - AluSx SINE Alu -12 300 15 24 32 0 0 chr1 32544279 32544310 -210120043 + AT_rich Low_complexity Low_complexity 1 31 0 453 299 48 74 chr1 32544310 32544414 -210119939 + L1M4 LINE L1 4076 4181 -1965 1995 144 0 33 chr1 32544414 32544720 -210119633 + AluSx SINE Alu 1 296 -16 2132 129 0 0 chr1 32544728 32545008 -210119345 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr1 32545009 32545030 -210119323 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 453 299 48 74 chr1 32545030 32545225 -210119128 + L1M4 LINE L1 4187 4378 -1768 1435 198 4 43 chr1 32545227 32545361 -210118992 + AluJb SINE Alu 1 120 -192 2150 93 25 56 chr1 32545361 32545684 -210118669 + AluSq SINE Alu 1 313 0 1435 198 4 43 chr1 32545684 32545827 -210118526 + AluJb SINE Alu 120 267 -45 742 184 0 7 chr1 32545931 32546072 -210118281 + FLAM_C SINE Alu 2 141 -2 2202 105 0 23 chr1 32546238 32546542 -210117811 + AluY SINE Alu 1 297 -14 368 365 57 7 chr1 32546556 32546857 -210117496 + L1M4 LINE L1 4711 5026 -1120 1048 115 53 43 chr1 32546883 32547092 -210117261 - Tigger7 DNA MER2_type -2 2485 2275 904 148 181 5 chr1 32547083 32547293 -210117060 + MER49 LTR ERV1 6 252 -671 * 983 106 8 0 chr1 32547295 32547427 -210116926 + AluSq/x SINE Alu 1 133 -180 3256 169 16 61 chr1 32547433 32547520 -210116833 + MER49 LTR ERV1 244 333 -590 2294 125 3 0 chr1 32547520 32547831 -210116522 - AluSx SINE Alu 0 312 1 3256 169 16 61 chr1 32547831 32548231 -210116122 + MER49 LTR ERV1 333 694 -229 2553 64 0 0 chr1 32548231 32548527 -210115826 + AluY SINE Alu 1 296 -15 3256 169 16 61 chr1 32548527 32548725 -210115628 + MER49 LTR ERV1 694 899 -24 1696 147 3 103 chr1 32548732 32548870 -210115483 + AluJo SINE Alu 1 91 -211 2141 139 3 16 chr1 32548870 32549187 -210115166 + AluSq SINE Alu 1 313 0 1696 147 3 103 chr1 32549187 32549368 -210114985 + AluJo SINE Alu 90 288 -14 775 291 7 28 chr1 32549561 32549846 -210114507 - L2 LINE L2 -571 2743 2465 2151 123 20 0 chr1 32549846 32550148 -210114205 + AluSx SINE Alu 1 308 -4 421 219 89 32 chr1 32550228 32550351 -210114002 + MER97a DNA MER1_type? 48 177 -717 2275 106 7 0 chr1 32550351 32550652 -210113701 + AluSp SINE Alu 1 303 -10 2112 127 14 0 chr1 32550761 32551053 -210113300 + AluSg SINE Alu 1 296 -14 320 273 36 55 chr1 32551211 32551321 -210113032 - L2 LINE L2 -995 2319 2212 1372 206 0 4 chr1 32551341 32551594 -210112759 - AluJb SINE Alu -2 310 59 2234 120 0 0 chr1 32551628 32551936 -210112417 - AluSg SINE Alu -2 308 1 316 291 58 86 chr1 32552026 32552209 -210112144 + L2 LINE L2 2215 2391 -923 2059 136 0 0 chr1 32552209 32552518 -210111835 - AluSx SINE Alu 0 309 1 316 291 58 86 chr1 32552518 32552610 -210111743 + L2 LINE L2 2391 2484 -830 315 215 0 0 chr1 32552677 32552742 -210111611 + MIR SINE MIR 173 237 -25 2524 62 0 20 chr1 32552839 32553145 -210111208 + AluSg SINE Alu 2 301 -9 24 53 0 0 chr1 32553521 32553559 -210110794 + AT_rich Low_complexity Low_complexity 1 38 0 1958 159 0 0 chr1 32553564 32553859 -210110494 + AluSx SINE Alu 6 300 -12 1888 133 65 0 chr1 32553979 32554258 -210110095 + AluSg SINE Alu 7 303 -7 3666 170 19 30 chr1 32554327 32554352 -210110001 - L1MB3 LINE L1 -1 6182 6158 2094 152 0 0 chr1 32554352 32554662 -210109691 + AluSx SINE Alu 1 310 -2 3666 170 19 30 chr1 32554662 32554673 -210109680 - L1MB3 LINE L1 -25 6158 6148 1589 170 31 50 chr1 32554673 32554793 -210109560 + AluJo SINE Alu 1 122 -190 207 0 0 0 chr1 32554793 32554816 -210109537 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1589 170 31 50 chr1 32554816 32554861 -210109492 + AluJo SINE Alu 122 166 -146 2100 128 3 13 chr1 32554861 32555174 -210109179 - AluSx SINE Alu -2 310 1 1589 170 31 50 chr1 32555174 32555325 -210109028 + AluJo SINE Alu 166 312 0 3666 170 19 30 chr1 32555325 32555864 -210108489 - L1MB3 LINE L1 -35 6148 5613 2453 70 0 3 chr1 32555864 32556165 -210108188 - AluY SINE Alu -11 300 1 3666 170 19 30 chr1 32556165 32556330 -210108023 - L1MB3 LINE L1 -570 5613 5448 1449 209 7 20 chr1 32556440 32556737 -210107616 - AluJo SINE Alu -15 297 5 806 168 0 0 chr1 32556808 32556927 -210107426 + FLAM_C SINE Alu 1 119 -24 1463 170 3 73 chr1 32556941 32557258 -210107095 + AluJb SINE Alu 1 295 -17 2121 122 3 10 chr1 32557926 32558230 -210106123 - AluSg SINE Alu -8 302 1 1456 214 7 0 chr1 32558804 32558819 -210105534 - AluJo SINE Alu -11 301 288 225 0 0 0 chr1 32558819 32558844 -210105509 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1456 214 7 0 chr1 32558844 32559127 -210105226 - AluJo SINE Alu -24 288 1 2288 87 0 31 chr1 32559127 32559448 -210104905 - AluY SINE Alu 0 311 1 437 169 0 56 chr1 32559451 32559540 -210104813 - FRAM SINE Alu -18 158 75 364 229 8 76 chr1 32559640 32559707 -210104646 - AluJo SINE Alu -121 181 124 2311 100 0 0 chr1 32559707 32560006 -210104347 + AluY SINE Alu 3 301 -10 364 229 8 76 chr1 32560006 32560056 -210104297 - AluJo SINE Alu -178 124 72 657 157 46 0 chr1 32560233 32560341 -210104012 - FLAM_C SINE Alu -18 125 13 1518 102 199 38 chr1 32560503 32560540 -210103813 - AluSg1 SINE Alu 0 309 279 234 0 0 0 chr1 32560540 32560566 -210103787 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1518 102 199 38 chr1 32560566 32560794 -210103559 - AluSg1 SINE Alu -30 279 1 2111 101 7 30 chr1 32560796 32561094 -210103259 - AluSq SINE Alu -20 293 3 997 181 6 16 chr1 32561095 32561277 -210103076 - L1MC1 LINE L1 -5 6328 6149 1116 195 24 24 chr1 32561283 32561529 -210102824 + MER58B DNA MER1_type 46 291 -50 477 118 0 0 chr1 32561529 32561597 -210102756 + AluSq/x SINE Alu 37 104 -208 1219 187 29 29 chr1 32561620 32561726 -210102627 - AluJo SINE Alu -66 246 141 2490 68 3 0 chr1 32561726 32562021 -210102332 - AluSp SINE Alu -12 301 6 1219 187 29 29 chr1 32562021 32562160 -210102193 - AluJo SINE Alu -170 142 1 207 234 43 0 chr1 32562534 32562581 -210101772 + CT-rich Low_complexity Low_complexity 5 53 0 688 146 0 16 chr1 32562741 32562864 -210101489 + AluJo/FLAM SINE Alu 2 122 -190 1327 152 0 9 chr1 32562867 32563077 -210101276 - AluSg/x SINE Alu -20 290 83 301 114 0 0 chr1 32563077 32563121 -210101232 - AluY SINE Alu -52 249 206 1088 103 0 20 chr1 32563121 32563267 -210101086 - AluSg SINE Alu -167 143 1 1199 170 0 0 chr1 32563273 32563455 -210100898 + AluJb SINE Alu 127 308 -4 1293 160 0 9 chr1 32564229 32564442 -210099911 + AluSq SINE Alu 85 295 -18 207 0 0 0 chr1 32565288 32565311 -210099042 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1984 109 3 41 chr1 32565311 32565605 -210098748 - AluSx SINE Alu -29 283 1 2432 60 3 10 chr1 32565616 32565914 -210098439 - AluY SINE Alu -15 296 1 2378 102 0 0 chr1 32566545 32566850 -210097503 - AluSx SINE Alu -7 305 1 1715 162 22 29 chr1 32566857 32567171 -210097182 - AluJb SINE Alu 0 312 1 2167 130 3 0 chr1 32567200 32567499 -210096854 + AluSx SINE Alu 1 300 -12 1106 173 0 0 chr1 32567499 32567678 -210096675 + AluJb SINE Alu 134 312 0 2213 100 0 7 chr1 32567723 32568014 -210096339 + AluSq SINE Alu 14 302 -11 248 242 71 40 chr1 32569229 32569328 -210095025 - MIR SINE MIR -44 218 117 207 0 0 0 chr1 32569735 32569758 -210094595 + (T)n Simple_repeat Simple_repeat 1 23 0 392 129 0 0 chr1 32569948 32570010 -210094343 - AluSp/q SINE Alu -1 302 241 2175 85 39 0 chr1 32570309 32570591 -210093762 + AluSg SINE Alu 1 293 -17 2187 109 0 16 chr1 32570605 32570908 -210093445 + AluSx SINE Alu 1 298 -14 1122 150 173 41 chr1 32570943 32571209 -210093144 + AluJo SINE Alu 2 302 0 2514 68 0 0 chr1 32571297 32571593 -210092760 + AluY SINE Alu 1 296 -15 2373 90 3 0 chr1 32572006 32572306 -210092047 + AluSp SINE Alu 1 301 -12 28 29 0 0 chr1 32572455 32572490 -210091863 + AT_rich Low_complexity Low_complexity 1 35 0 1628 174 50 0 chr1 32573123 32573405 -210090948 - AluSx SINE Alu -16 296 1 2461 71 0 3 chr1 32573490 32573785 -210090568 + AluSx SINE Alu 13 306 -6 961 180 6 17 chr1 32573917 32574078 -210090275 - AluSq SINE Alu -18 295 135 2262 114 0 0 chr1 32574078 32574375 -210089978 - AluSx SINE Alu -15 297 1 2241 110 10 0 chr1 32574386 32574685 -210089668 - AluSx SINE Alu -10 302 1 2462 87 0 0 chr1 32574835 32575146 -210089207 + AluY SINE Alu 1 311 0 2372 88 10 0 chr1 32575342 32575650 -210088703 - AluY SINE Alu 0 311 1 1940 125 7 7 chr1 32575660 32575948 -210088405 - AluSq SINE Alu -25 288 1 1909 154 7 3 chr1 32576413 32576699 -210087654 - AluSg SINE Alu -23 287 1 1659 117 135 8 chr1 32576839 32577105 -210087248 + AluSg SINE Alu 1 300 0 2272 93 3 7 chr1 32577204 32577504 -210086849 - AluSp SINE Alu -14 299 1 2197 125 0 10 chr1 32577505 32577809 -210086544 - AluSx SINE Alu -11 301 1 28 48 0 0 chr1 32577978 32578020 -210086333 + AT_rich Low_complexity Low_complexity 1 42 0 719 160 25 0 chr1 32578022 32578141 -210086212 - FLAM_C SINE Alu -20 123 2 1921 116 27 24 chr1 32578171 32578465 -210085888 + AluSx SINE Alu 1 295 -17 2036 118 34 0 chr1 32578511 32578808 -210085545 + AluSg SINE Alu 1 307 -3 552 110 0 12 chr1 32578840 32578922 -210085431 + AluY SINE Alu 209 289 -22 1770 145 122 33 chr1 32578941 32579187 -210085166 - L1MB8 LINE L1 -70 6108 5885 2394 66 7 3 chr1 32579187 32579489 -210084864 - AluY SINE Alu -8 303 1 1770 145 122 33 chr1 32579489 32579670 -210084683 - L1MB8 LINE L1 -293 5885 5643 1809 107 7 59 chr1 32580111 32580401 -210083952 + AluSq SINE Alu 23 297 -16 1146 146 203 29 chr1 32580589 32580835 -210083518 + AluSx SINE Alu 1 289 -13 250 256 68 26 chr1 32580868 32580985 -210083368 + L1ME4a LINE L1 5956 6077 -44 2219 116 0 3 chr1 32581254 32581586 -210082767 - AluSx SINE Alu 0 312 1 2089 197 36 2 chr1 32581746 32582158 -210082195 - MSTB LTR MaLR 0 426 1 736 165 0 24 chr1 32582232 32582359 -210081994 + FLAM_C SINE Alu 1 124 -9 43 20 0 0 chr1 32582811 32582861 -210081492 + AT_rich Low_complexity Low_complexity 1 50 0 459 188 60 34 chr1 32582862 32582979 -210081374 - FLAM_A SINE Alu -13 120 1 690 161 0 51 chr1 32583389 32583526 -210080827 + FLAM_C SINE Alu 1 130 -3 272 128 0 0 chr1 32583603 32583650 -210080703 - AluSp/q SINE Alu -2 301 255 1988 124 7 36 chr1 32583684 32583990 -210080363 - AluSx SINE Alu -15 297 1 2310 90 0 17 chr1 32584086 32584386 -210079967 + AluY SINE Alu 1 295 -16 1071 219 13 9 chr1 32584399 32584623 -210079730 + AluJb SINE Alu 87 311 -1 243 0 0 0 chr1 32584623 32584650 -210079703 + (TA)n Simple_repeat Simple_repeat 1 27 0 602 256 134 0 chr1 32584657 32584895 -210079458 - L1ME4a LINE L1 -293 5828 5559 186 234 31 62 chr1 32585020 32585084 -210079269 - L2 LINE L2 -7 3265 3204 2206 68 0 89 chr1 32585515 32585840 -210078513 - AluY SINE Alu -15 296 1 1826 122 68 4 chr1 32585888 32586166 -210078187 - AluSx SINE Alu -16 296 1 598 114 16 65 chr1 32587048 32587171 -210077182 - FLAM_C SINE Alu -16 127 11 272 344 86 16 chr1 32587210 32587240 -210077113 + MIR SINE MIR 13 39 -223 2164 93 28 7 chr1 32587240 32587531 -210076822 + AluSg SINE Alu 1 297 -13 272 344 86 16 chr1 32587531 32587628 -210076725 + MIR SINE MIR 39 149 -113 2385 83 3 0 chr1 32587834 32588135 -210076218 - AluSp SINE Alu -7 306 5 1474 173 40 4 chr1 32588201 32588450 -210075903 - AluSx SINE Alu -13 299 42 907 144 0 7 chr1 32589100 32589239 -210075114 - AluSq/x SINE Alu -162 151 14 1591 154 92 11 chr1 32589669 32589941 -210074412 + AluJo SINE Alu 1 294 -18 1808 110 99 10 chr1 32589943 32590235 -210074118 + AluYb8 SINE Alu 1 318 0 1057 174 12 0 chr1 32590235 32590402 -210073951 + AluSg/x SINE Alu 130 298 -12 883 151 0 78 chr1 32590552 32590578 -210073775 - AluJb SINE Alu 0 312 286 1675 101 0 0 chr1 32590578 32590785 -210073568 - AluSx SINE Alu -105 207 1 883 151 0 78 chr1 32590785 32590937 -210073416 - AluJb SINE Alu -26 286 148 22 0 0 0 chr1 32591022 32591044 -210073309 + AT_rich Low_complexity Low_complexity 1 22 0 374 97 65 0 chr1 32591044 32591106 -210073247 + Alu SINE Alu 233 298 -4 262 96 19 19 chr1 32591671 32591723 -210072630 + (GA)n Simple_repeat Simple_repeat 2 53 0 218 191 191 0 chr1 32592144 32592212 -210072141 + MIR SINE MIR 120 200 -62 1144 163 19 83 chr1 32592887 32593151 -210071202 - AluJb SINE Alu -17 295 49 2246 94 27 3 chr1 32593377 32593675 -210070678 - AluSx SINE Alu -7 305 1 1193 160 38 9 chr1 32593675 32593887 -210070466 - AluJb SINE Alu -10 302 85 743 149 57 57 chr1 32596305 32596446 -210067907 - FLAM_C SINE Alu -1 142 2 22 0 0 0 chr1 32596449 32596471 -210067882 + AT_rich Low_complexity Low_complexity 1 22 0 346 234 194 0 chr1 32596817 32596941 -210067412 - MIR SINE MIR -48 214 67 1245 126 16 11 chr1 32597322 32597512 -210066841 - AluSg/x SINE Alu -1 309 119 2300 104 3 0 chr1 32597640 32597937 -210066416 + AluSp SINE Alu 1 298 -15 183 156 0 0 chr1 32597943 32597975 -210066378 + (CATA)n Simple_repeat Simple_repeat 2 33 0 2176 112 0 0 chr1 32598026 32598312 -210066041 + AluSx SINE Alu 1 286 -26 189 0 0 0 chr1 32598312 32598333 -210066020 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 2114 124 3 0 chr1 32598452 32598734 -210065619 + AluSx SINE Alu 1 283 -29 200 59 29 0 chr1 32598739 32598773 -210065580 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 658 151 8 17 chr1 32599024 32599143 -210065210 + FLAM_C SINE Alu 1 118 -15 2053 106 56 0 chr1 32599183 32599467 -210064886 + AluSc SINE Alu 1 300 -9 27 0 0 0 chr1 32599467 32599494 -210064859 + AT_rich Low_complexity Low_complexity 1 27 0 1549 147 113 0 chr1 32599528 32599793 -210064560 + AluJo SINE Alu 5 299 -13 423 284 37 9 chr1 32599843 32600011 -210064342 - MIR SINE MIR -66 142 8 2238 99 3 0 chr1 32600190 32600484 -210063869 + AluSg SINE Alu 3 297 -13 697 197 46 0 chr1 32601317 32601469 -210062884 + L1PB4 LINE L1 5996 6154 -2 401 309 67 6 chr1 32603946 32604124 -210060229 + MIR SINE MIR 24 212 -50 2481 54 0 3 chr1 32604164 32604462 -210059891 + AluY SINE Alu 1 297 -14 2396 65 0 7 chr1 32604672 32604964 -210059389 + AluSc SINE Alu 1 290 -19 330 296 0 0 chr1 32604986 32605074 -210059279 - L1MC4 LINE L1 -1340 6702 6615 314 281 0 42 chr1 32605015 32605111 -210059242 + L1MC4 LINE L1 6614 6705 -1337 * 1725 162 14 3 chr1 32605175 32605472 -210058881 + AluJo SINE Alu 3 302 -10 1957 134 29 10 chr1 32605502 32605808 -210058545 + AluSx SINE Alu 1 312 0 696 203 22 99 chr1 32605808 32606033 -210058320 + L1MB7 LINE L1 5932 6140 -44 864 210 47 37 chr1 32606036 32606250 -210058103 - AluJo SINE Alu -13 299 84 2034 140 0 0 chr1 32606266 32606578 -210057775 + AluSq SINE Alu 1 312 0 2169 111 0 0 chr1 32606608 32606896 -210057457 + AluSc SINE Alu 1 288 -21 2365 104 0 7 chr1 32607094 32607402 -210056951 - AluSx SINE Alu -6 306 1 249 310 159 7 chr1 32607496 32607628 -210056725 + MIR SINE MIR 64 221 -41 463 288 0 0 chr1 32607628 32607760 -210056593 + FLAM_C SINE Alu 2 133 0 249 310 159 7 chr1 32607760 32607772 -210056581 + MIR SINE MIR 221 230 -32 189 0 0 0 chr1 32607774 32607795 -210056558 + (TTA)n Simple_repeat Simple_repeat 2 22 0 266 89 222 0 chr1 32607803 32607848 -210056505 - AluJb SINE Alu -184 118 64 735 168 17 0 chr1 32607902 32608021 -210056332 - FRAM SINE Alu -18 158 38 234 197 0 33 chr1 32608091 32608152 -210056201 + MIR SINE MIR 100 158 -104 2037 115 56 0 chr1 32608356 32608643 -210055710 - AluSx SINE Alu -9 303 1 964 143 19 19 chr1 32608693 32608707 -210055646 - FRAM SINE Alu -136 40 27 2360 108 0 3 chr1 32608707 32609021 -210055332 - AluSq SINE Alu 0 313 1 964 143 19 19 chr1 32609021 32609167 -210055186 - FRAM SINE Alu -148 28 1 2376 96 3 3 chr1 32609193 32609505 -210054848 - AluSp SINE Alu -1 312 1 1497 140 0 9 chr1 32609573 32609795 -210054558 - AluSg/x SINE Alu -25 285 66 2581 60 0 0 chr1 32609795 32610093 -210054260 - AluY SINE Alu -12 299 1 2442 84 0 0 chr1 32610093 32610389 -210053964 - AluSx SINE Alu -6 306 11 1678 180 0 7 chr1 32610420 32610698 -210053655 - AluJb SINE Alu -32 280 5 2262 103 0 0 chr1 32610730 32611020 -210053333 + AluSx SINE Alu 1 290 -22 2044 82 8 0 chr1 32611146 32611401 -210052952 + AluSq SINE Alu 2 258 -55 180 0 0 0 chr1 32611403 32611423 -210052930 + (A)n Simple_repeat Simple_repeat 1 20 0 690 266 112 13 chr1 32611465 32611575 -210052778 + HAL1 LINE L1 1055 1153 -1354 1685 196 4 0 chr1 32611575 32611878 -210052475 + AluJb SINE Alu 1 304 0 690 266 112 13 chr1 32611878 32612142 -210052211 + HAL1 LINE L1 1153 1467 -1040 252 0 0 0 chr1 32612283 32612311 -210052042 + (T)n Simple_repeat Simple_repeat 1 28 0 276 165 187 137 chr1 32612617 32612799 -210051554 + MLT1K LTR MaLR 398 588 0 2392 92 0 0 chr1 32612930 32613235 -210051118 + AluSg SINE Alu 1 305 -5 1967 110 55 0 chr1 32613573 32613845 -210050508 + AluSx SINE Alu 1 287 -25 1804 171 4 0 chr1 32613874 32614199 -210050154 - AluJb SINE Alu 0 326 1 1930 121 0 26 chr1 32614223 32614496 -210049857 - AluSq SINE Alu -14 299 34 237 323 54 0 chr1 32614501 32614594 -210049759 + MIR SINE MIR 117 214 -48 320 264 90 21 chr1 32614966 32615206 -210049147 - L1MEd LINE L1 -4866 1253 1023 2221 109 3 0 chr1 32615230 32615540 -210048813 - AluSq SINE Alu 0 311 1 22 0 0 0 chr1 32615542 32615564 -210048789 + AT_rich Low_complexity Low_complexity 1 22 0 2223 102 3 0 chr1 32615650 32615957 -210048396 - AluSq SINE Alu 0 308 1 2231 106 17 0 chr1 32616748 32617050 -210047303 - AluSx SINE Alu -5 307 1 2321 99 6 10 chr1 32617076 32617388 -210046965 - AluSx SINE Alu -1 311 1 1995 159 10 0 chr1 32617467 32617769 -210046584 + AluJb SINE Alu 1 305 -7 2487 60 7 0 chr1 32617773 32618074 -210046279 + AluY SINE Alu 1 303 -8 1803 163 6 28 chr1 32618198 32618517 -210045836 + AluJo SINE Alu 1 312 0 2141 98 3 65 chr1 32618544 32618869 -210045484 - AluSg SINE Alu -5 305 1 1825 140 55 3 chr1 32619468 32619761 -210044592 - AluJo SINE Alu 0 312 5 489 283 36 0 chr1 32620145 32620311 -210044042 - L1ME2 LINE L1 0 6164 5993 1873 165 3 13 chr1 32620385 32620694 -210043659 - AluSx SINE Alu -6 306 1 2170 100 3 32 chr1 32620703 32621012 -210043341 - AluSq SINE Alu -13 300 1 423 276 57 11 chr1 32621091 32621300 -210043053 - MIR SINE MIR -42 220 3 820 203 94 10 chr1 32621433 32621625 -210042728 - MER63A DNA MER1_type -2 208 1 432 0 0 0 chr1 32622111 32622159 -210042194 + (TG)n Simple_repeat Simple_repeat 1 48 0 1614 175 0 70 chr1 32622239 32622403 -210041950 - AluJb SINE Alu -15 297 123 2114 134 0 10 chr1 32622403 32622702 -210041651 - AluSx SINE Alu -16 296 1 1614 175 0 70 chr1 32622702 32622763 -210041590 - AluJb SINE Alu -189 123 98 2341 80 0 16 chr1 32622763 32623074 -210041279 - AluSx SINE Alu -6 306 1 1614 175 0 70 chr1 32623074 32623162 -210041191 - AluJb SINE Alu -214 98 5 289 277 155 7 chr1 32623622 32623770 -210040583 - L2 LINE L2 -145 3168 2999 406 230 158 0 chr1 32623845 32623997 -210040356 - L2 LINE L2 -577 2737 2562 366 23 0 0 chr1 32624009 32624052 -210040301 + (TG)n Simple_repeat Simple_repeat 2 44 0 442 280 7 21 chr1 32624167 32624310 -210040043 - MLT1L LTR MaLR -28 587 447 2348 115 0 0 chr1 32624538 32624850 -210039503 + AluSx SINE Alu 1 312 0 226 287 76 25 chr1 32625010 32625136 -210039217 + MIR SINE MIR 20 152 -56 219 103 0 0 chr1 32625597 32625636 -210038717 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2048 90 7 41 chr1 32625638 32625928 -210038425 - AluY SINE Alu -31 280 1 1793 164 0 27 chr1 32625978 32626321 -210038032 - AluJo SINE Alu 0 312 1 2397 98 0 13 chr1 32628218 32628534 -210035819 + AluSx SINE Alu 1 312 0 2252 92 17 7 chr1 32630127 32630422 -210033931 - AluSc SINE Alu -11 298 1 2130 117 0 17 chr1 32630885 32631184 -210033169 - AluSx SINE Alu -18 294 1 3002 130 35 16 chr1 32633675 32634160 -210030193 + L1PA16 LINE L1 5657 6150 -16 1872 178 3 0 chr1 32634698 32635002 -210029351 - AluSx SINE Alu -7 305 1 1989 129 19 19 chr1 32635383 32635693 -210028660 - AluSx SINE Alu -2 310 1 2116 130 7 0 chr1 32635702 32636002 -210028351 - AluSx SINE Alu -8 304 3 220 333 45 23 chr1 32636106 32636238 -210028115 + L2 LINE L2 2595 2729 -585 1321 88 101 42 chr1 32636437 32636654 -210027699 + MER30 DNA MER1_type 1 230 0 21 36 0 0 chr1 32637669 32637697 -210026656 + AT_rich Low_complexity Low_complexity 1 28 0 1192 178 39 13 chr1 32637777 32638007 -210026346 - MER46A DNA MER2_type 0 236 1 2495 83 3 0 chr1 32638100 32638412 -210025941 + AluSp SINE Alu 1 313 0 2523 82 0 0 chr1 32638432 32638736 -210025617 + AluY SINE Alu 1 304 -7 26 50 0 0 chr1 32638991 32639031 -210025322 + AT_rich Low_complexity Low_complexity 1 40 0 677 165 50 8 chr1 32639099 32639220 -210025133 - FLAM_C SINE Alu -16 127 2 2152 97 0 4 chr1 32639268 32639547 -210024806 - AluSx SINE Alu -14 298 21 25 51 0 0 chr1 32639558 32639597 -210024756 + AT_rich Low_complexity Low_complexity 1 39 0 699 168 44 0 chr1 32639597 32639710 -210024643 - FLAM_C SINE Alu -15 118 1 1769 164 16 13 chr1 32639749 32640053 -210024300 - AluJb SINE Alu -7 305 1 198 0 0 0 chr1 32641498 32641520 -210022833 + (T)n Simple_repeat Simple_repeat 1 22 0 734 184 14 149 chr1 32642812 32642868 -210021485 - MLT1E LTR MaLR -5 580 518 360 0 0 0 chr1 32642868 32642908 -210021445 + (TG)n Simple_repeat Simple_repeat 2 41 0 1316 199 66 26 chr1 32642915 32643186 -210021167 - AluJo SINE Alu -30 282 1 734 184 14 149 chr1 32643186 32643445 -210020908 - MLT1E LTR MaLR -73 512 317 553 261 78 57 chr1 32643516 32643815 -210020538 - MLT1E LTR MaLR -263 304 1 255 47 256 0 chr1 32643950 32643993 -210020360 - MADE1 DNA Mariner -26 54 1 2088 139 0 7 chr1 32644279 32644589 -210019764 - AluSx SINE Alu -4 308 1 2013 118 0 36 chr1 32644875 32645181 -210019172 - AluY SINE Alu -16 295 1 297 0 0 0 chr1 32648248 32648281 -210016072 + (TC)n Simple_repeat Simple_repeat 2 34 0 2177 116 0 0 chr1 32650313 32650598 -210013755 - AluSq SINE Alu -28 285 1 499 246 162 7 chr1 32652060 32652202 -210012151 + MER5A DNA MER1_type 26 189 0 320 245 39 29 chr1 32652401 32652503 -210011850 - MIR SINE MIR -52 210 108 903 134 18 64 chr1 32652689 32652860 -210011493 - AluSc SINE Alu -18 291 129 2466 68 10 3 chr1 32652861 32653168 -210011185 - AluY SINE Alu -2 309 1 205 273 66 74 chr1 32653927 32654048 -210010305 + MER5B DNA MER1_type 4 123 -55 231 294 33 22 chr1 32654302 32654394 -210009959 - MIR SINE MIR -112 150 58 2576 77 0 0 chr1 32654435 32654746 -210009607 - AluSx SINE Alu 0 312 2 1664 210 3 0 chr1 32654772 32655082 -210009271 + AluJo SINE Alu 1 311 -1 238 111 28 0 chr1 32655252 32655288 -210009065 - AluJo SINE Alu -24 278 242 1300 158 8 37 chr1 32655476 32655717 -210008636 - AluJo SINE Alu -78 234 1 409 274 26 0 chr1 32655857 32655974 -210008379 - L1ME3A LINE L1 -5 6165 6046 465 217 0 0 chr1 32656203 32656295 -210008058 + AluSg/x SINE Alu 137 228 -84 204 244 0 0 chr1 32656605 32656650 -210007703 - L2 LINE L2 -254 3059 3015 2368 89 3 0 chr1 32656652 32656944 -210007409 - AluSx SINE Alu -19 293 1 584 221 175 0 chr1 32657049 32657203 -210007150 + MLT1J LTR MaLR 1 181 -330 560 241 87 34 chr1 32657279 32657486 -210006867 + MLT1J LTR MaLR 292 509 -2 213 357 0 16 chr1 32657529 32657658 -210006695 - L2 LINE L2 -571 2743 2617 1224 188 0 27 chr1 32658231 32658455 -210005898 - AluJo SINE Alu -94 218 1 341 343 6 0 chr1 32658734 32658909 -210005444 + (TG)n Simple_repeat Simple_repeat 1 176 0 222 176 0 0 chr1 32659062 32659113 -210005240 + (CA)n Simple_repeat Simple_repeat 1 51 0 2563 51 3 0 chr1 32659483 32659775 -210004578 - AluSp SINE Alu -18 295 3 432 202 0 0 chr1 32659889 32659973 -210004380 + L2 LINE L2 3230 3313 0 273 255 151 9 chr1 32659971 32660077 -210004276 - MIR SINE MIR -95 167 47 * 190 163 0 70 chr1 32660201 32660244 -210004109 + MIR SINE MIR 112 151 -111 584 265 88 10 chr1 32660599 32660803 -210003550 + MIR SINE MIR 32 251 -11 2438 77 3 7 chr1 32661450 32661748 -210002605 + AluSp SINE Alu 1 297 -16 705 280 39 0 chr1 32661971 32662178 -210002175 + MIR SINE MIR 37 251 -11 1509 135 0 0 chr1 32662186 32662394 -210001959 + AluJb SINE Alu 86 293 -19 494 287 86 29 chr1 32662523 32662623 -210001730 - MIR SINE MIR -3 259 166 1743 202 32 45 chr1 32662623 32663094 -210001259 + MLT1C LTR MaLR 1 465 -2 494 287 86 29 chr1 32663094 32663237 -210001116 - MIR SINE MIR -96 166 2 497 186 0 62 chr1 32663541 32663654 -210000699 + MIR SINE MIR 40 145 -63 586 251 45 0 chr1 32664151 32664330 -210000023 - MIR SINE MIR -34 228 42 461 289 42 0 chr1 32664327 32664469 -209999884 - MIR3 SINE MIR -20 188 41 * 252 270 38 129 chr1 32664492 32664989 -209999364 + MLT1J LTR MaLR 40 491 -20 1819 139 14 11 chr1 32665704 32665991 -209998362 - AluJb SINE Alu -24 288 1 905 172 38 13 chr1 32666319 32666476 -209997877 - FRAM SINE Alu -17 159 1 686 236 26 41 chr1 32666483 32666678 -209997675 + L1ME LINE L1 18 209 -5861 996 228 173 64 chr1 32666720 32667206 -209997147 + L1ME LINE L1 293 831 -5239 636 81 0 0 chr1 32667222 32667309 -209997044 + (TCTG)n Simple_repeat Simple_repeat 2 88 0 1850 116 60 0 chr1 32667320 32667587 -209996766 - AluSx SINE Alu -29 283 1 183 273 127 0 chr1 32667899 32667954 -209996399 - L2 LINE L2 -17 3296 3235 205 209 0 23 chr1 32669300 32669343 -209995010 + GA-rich Low_complexity Low_complexity 3 44 0 1945 152 10 7 chr1 32670728 32671030 -209993323 - AluJb SINE Alu -9 303 1 21 0 0 0 chr1 32671331 32671352 -209993001 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 32671458 32671480 -209992873 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 32673086 32673107 -209991246 + AT_rich Low_complexity Low_complexity 1 21 0 180 297 0 0 chr1 32674526 32674563 -209989790 + L2 LINE L2 3145 3181 -91 2410 97 3 0 chr1 32675219 32675529 -209988824 - AluSq SINE Alu -2 311 1 440 188 159 40 chr1 32676667 32676843 -209987510 - Charlie4 DNA MER1_type -15 1946 1750 908 203 20 10 chr1 32676865 32677067 -209987286 - Charlie4 DNA MER1_type -1711 250 47 2506 74 0 0 chr1 32677324 32677623 -209986730 + AluSg SINE Alu 1 299 -11 2150 119 0 0 chr1 32678564 32678858 -209985495 + AluSx SINE Alu 1 294 -18 2241 100 10 0 chr1 32679149 32679448 -209984905 - AluSp SINE Alu -11 302 1 778 216 32 28 chr1 32679606 32679824 -209984529 - MIR SINE MIR -38 224 6 1516 141 50 67 chr1 32680918 32681216 -209983137 + AluJo SINE Alu 3 295 -17 259 229 0 29 chr1 32681321 32681391 -209982962 + L2 LINE L2 3246 3313 0 224 30 30 0 chr1 32681868 32681901 -209982452 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 496 234 8 8 chr1 32682442 32682566 -209981787 + L2 LINE L2 3190 3313 0 303 132 29 59 chr1 32683067 32683135 -209981218 + L1MC4 LINE L1 6614 6679 -1363 1091 120 18 6 chr1 32683237 32683404 -209980949 - AluSx SINE Alu -106 206 38 193 319 62 18 chr1 32683665 32683778 -209980575 + L2 LINE L2 2234 2351 -963 195 197 61 61 chr1 32684142 32684208 -209980145 + MER5B DNA MER1_type 111 176 -2 1468 205 13 28 chr1 32684511 32684828 -209979525 - AluJo SINE Alu 0 312 1 241 240 207 77 chr1 32685253 32685375 -209978978 - MIR SINE MIR -4 258 153 2088 134 0 13 chr1 32685375 32685682 -209978671 - AluSx SINE Alu -9 303 1 241 240 207 77 chr1 32685682 32685767 -209978586 - MIR SINE MIR -109 153 24 1305 155 140 63 chr1 32686322 32686657 -209977696 + MER46B DNA MER2_type 1 236 0 217 116 0 23 chr1 32686657 32686694 -209977659 - MIR SINE MIR -114 148 113 1954 105 3 25 chr1 32687538 32687823 -209976530 - AluSq SINE Alu -12 301 23 1533 167 35 42 chr1 32687990 32688301 -209976052 + AluJb SINE Alu 1 309 -3 2328 92 3 0 chr1 32689543 32689836 -209974517 - AluSg SINE Alu -16 294 1 22 0 0 0 chr1 32690371 32690393 -209973960 + AT_rich Low_complexity Low_complexity 1 22 0 2185 90 17 14 chr1 32690556 32690846 -209973507 - AluSq SINE Alu -22 291 1 3509 143 35 19 chr1 32690878 32691471 -209972882 - LTR26 LTR ERV1 0 603 1 1551 171 7 14 chr1 32691726 32692001 -209972352 - AluJo SINE Alu -23 289 17 285 278 40 46 chr1 32692009 32692160 -209972193 - LTR49-int LTR ERV1 -604 6933 6784 1055 142 0 25 chr1 32692202 32692364 -209971989 + AluJb SINE Alu 133 290 -22 2350 90 0 10 chr1 32692410 32692709 -209971644 - AluSx SINE Alu -12 300 5 446 178 26 125 chr1 32692831 32692983 -209971370 - LTR49-int LTR ERV1 -188 4748 4612 324 336 31 23 chr1 32693010 32693138 -209971215 - LTR49-int LTR ERV1 -432 5899 5771 1864 159 3 0 chr1 32693264 32693560 -209970793 - AluSx SINE Alu -14 298 2 1536 192 14 11 chr1 32695571 32695852 -209968501 + AluJb SINE Alu 1 282 -30 436 252 126 35 chr1 32696142 32696192 -209968161 + L2 LINE L2 3049 3093 -220 2230 103 3 28 chr1 32696192 32696513 -209967840 - AluSq SINE Alu 0 313 1 436 252 126 35 chr1 32696513 32696692 -209967661 + L2 LINE L2 3093 3299 -14 26 0 0 0 chr1 32698813 32698839 -209965514 + AT_rich Low_complexity Low_complexity 1 26 0 183 100 0 0 chr1 32699345 32699375 -209964978 + (CCCCAG)n Simple_repeat Simple_repeat 4 33 0 498 184 53 0 chr1 32699838 32699952 -209964401 - L1ME LINE L1 -5101 969 850 529 122 0 0 chr1 32699980 32700054 -209964299 + AluS SINE Alu 2 75 -235 1156 101 7 0 chr1 32700054 32700203 -209964150 - AluSg/x SINE Alu -27 283 134 1787 183 33 0 chr1 32702213 32702513 -209961840 - AluJb SINE Alu -2 310 1 1728 134 108 14 chr1 32702843 32703120 -209961233 + AluJb SINE Alu 1 303 -9 310 311 66 16 chr1 32703601 32703723 -209960630 + MIR SINE MIR 2 129 -133 316 344 149 18 chr1 32703785 32704006 -209960347 + MIR SINE MIR 11 260 -2 818 183 28 0 chr1 32704076 32704218 -209960135 - FRAM SINE Alu -19 157 12 35 54 0 14 chr1 32704288 32704339 -209960014 + AT_rich Low_complexity Low_complexity 1 52 -21 2389 91 0 0 chr1 32704339 32704635 -209959718 - AluSg SINE Alu -14 296 1 35 54 0 14 chr1 32704635 32704657 -209959696 + AT_rich Low_complexity Low_complexity 52 73 0 636 220 55 11 chr1 32704657 32704839 -209959514 + Tigger5 DNA MER2_type 2133 2322 -1 376 258 122 87 chr1 32704851 32705198 -209959155 - L1M4 LINE L1 -2803 3343 2908 2283 95 0 7 chr1 32705324 32705660 -209958693 + AluSg SINE Alu 1 310 0 2192 86 10 20 chr1 32705682 32705983 -209958370 + AluY SINE Alu 1 298 -13 201 39 0 0 chr1 32705998 32706024 -209958329 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 407 313 23 0 chr1 32706133 32706261 -209958092 - L2 LINE L2 -1 3271 3141 1675 154 11 0 chr1 32706317 32706583 -209957770 + AluSp SINE Alu 1 269 -44 1933 167 0 0 chr1 32706584 32706866 -209957487 - AluSx SINE Alu -30 282 1 3090 125 14 82 chr1 32706887 32707183 -209957170 - LTR26B LTR ERV1 0 531 216 2414 102 3 0 chr1 32707183 32707488 -209956865 - AluSp SINE Alu -7 306 1 3090 125 14 82 chr1 32707488 32707550 -209956803 - LTR26B LTR ERV1 -315 216 151 2520 67 0 0 chr1 32707550 32707850 -209956503 - AluY SINE Alu -11 300 1 2241 105 0 40 chr1 32707856 32708180 -209956173 - AluSq SINE Alu -2 311 1 3090 125 14 82 chr1 32708180 32708383 -209955970 - LTR26B LTR ERV1 -385 146 1 2013 135 7 3 chr1 32708489 32708795 -209955558 + AluSx SINE Alu 1 307 0 1278 171 110 20 chr1 32708799 32708937 -209955416 + AluJo SINE Alu 1 125 -187 2234 90 4 0 chr1 32708937 32709214 -209955139 + AluSp SINE Alu 3 280 -33 1278 171 110 20 chr1 32709214 32709320 -209955033 + AluJo SINE Alu 125 267 -45 315 0 0 0 chr1 32709328 32709363 -209954990 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 196 352 167 19 chr1 32709409 32709517 -209954836 - L2 LINE L2 -204 3068 2945 1234 139 0 0 chr1 32709519 32709692 -209954661 + AluSg/x SINE Alu 137 309 -3 2433 100 3 0 chr1 32709703 32710012 -209954341 + AluSp SINE Alu 1 310 -3 436 314 79 56 chr1 32710018 32710204 -209954149 - L2 LINE L2 -371 2943 2763 2632 123 32 21 chr1 32710204 32710359 -209953994 - LTR23 LTR ERV1 0 437 285 1968 155 0 25 chr1 32710359 32710494 -209953859 + AluSx SINE Alu 1 138 -174 2403 89 0 3 chr1 32710494 32710796 -209953557 + AluSg SINE Alu 1 301 -9 2313 101 0 0 chr1 32710800 32711106 -209953247 + AluSg SINE Alu 1 310 0 1968 155 0 25 chr1 32711106 32711282 -209953071 + AluSx SINE Alu 141 309 -3 2632 123 32 21 chr1 32711282 32711557 -209952796 - LTR23 LTR ERV1 -152 285 2 436 314 79 56 chr1 32711557 32711622 -209952731 - L2 LINE L2 -551 2763 2686 335 299 58 82 chr1 32711632 32711923 -209952430 + L1ME4a LINE L1 5835 6118 -3 2353 115 0 6 chr1 32711993 32712306 -209952047 - AluSq SINE Alu -2 311 1 533 225 21 0 chr1 32712309 32712451 -209951902 - LTR16A1 LTR ERVL -6 451 307 2066 94 8 0 chr1 32712814 32713079 -209951274 + AluSg SINE Alu 35 301 -9 249 122 0 0 chr1 32713080 32713121 -209951232 - MER41A LTR ERV1 -131 423 383 2186 107 0 10 chr1 32713164 32713455 -209950898 + AluSc SINE Alu 1 288 -21 2387 82 7 0 chr1 32713528 32713831 -209950522 + AluSp SINE Alu 1 305 -8 1749 191 6 28 chr1 32713840 32714159 -209950194 + AluJb SINE Alu 1 312 0 719 300 50 3 chr1 32714209 32714506 -209949847 - L1MC4a LINE L1 -1893 5915 5605 2268 112 0 0 chr1 32714513 32714808 -209949545 - AluSx SINE Alu -17 295 1 2424 91 0 0 chr1 32715040 32715336 -209949017 - AluSq SINE Alu -17 296 1 38 0 0 0 chr1 32715355 32715393 -209948960 + AT_rich Low_complexity Low_complexity 1 38 0 678 214 0 0 chr1 32715393 32715510 -209948843 - FLAM_C SINE Alu -15 118 2 2358 107 3 0 chr1 32715617 32715927 -209948426 + AluSp SINE Alu 1 311 -2 2279 100 0 0 chr1 32715927 32716217 -209948136 + AluSg1 SINE Alu 1 290 -19 691 165 0 0 chr1 32716359 32716468 -209947885 - FRAM SINE Alu -22 154 46 2145 112 7 0 chr1 32716621 32716915 -209947438 - AluSq SINE Alu -15 298 3 1320 220 62 22 chr1 32717045 32717318 -209947035 + AluJo SINE Alu 7 290 -22 290 271 21 125 chr1 32717321 32717380 -209946973 + L2 LINE L2 2710 2774 -540 1999 101 0 82 chr1 32717380 32717708 -209946645 + AluSx SINE Alu 1 301 -11 290 271 21 125 chr1 32717708 32717777 -209946576 + L2 LINE L2 2774 2849 -465 1619 122 0 0 chr1 32717777 32717999 -209946354 + AluSg/x SINE Alu 73 294 -18 290 271 21 125 chr1 32717999 32718109 -209946244 + L2 LINE L2 2849 2924 -390 712 246 188 4 chr1 32718177 32718433 -209945920 - MLT1K LTR MaLR -279 309 7 2304 111 0 0 chr1 32718551 32718849 -209945504 - AluSc SINE Alu -11 298 1 376 246 101 22 chr1 32718969 32719107 -209945246 - L2 LINE L2 -3 3310 3162 561 206 30 0 chr1 32719224 32719355 -209944998 + L1ME LINE L1 5423 5557 -607 984 88 19 62 chr1 32719379 32719539 -209944814 + AluJb SINE Alu 160 312 0 2439 96 0 3 chr1 32719609 32719922 -209944431 - AluSx SINE Alu 0 312 1 345 310 47 16 chr1 32720252 32720381 -209943972 - MIR SINE MIR -73 189 57 189 0 0 0 chr1 32720647 32720668 -209943685 + (CGGGGG)n Simple_repeat Simple_repeat 3 23 0 241 203 0 43 chr1 32720818 32720887 -209943466 + G-rich Low_complexity Low_complexity 1 66 0 333 269 43 11 chr1 32721002 32721095 -209943258 - L1MC4 LINE L1 -1339 6703 6608 308 169 182 26 chr1 32721071 32721148 -209943205 + L1MC4 LINE L1 6615 6703 -1339 * 232 180 49 0 chr1 32721149 32721210 -209943143 + (TA)n Simple_repeat Simple_repeat 2 65 0 375 248 88 16 chr1 32721210 32721335 -209943018 + L2 LINE L2 2532 2665 -649 312 235 44 59 chr1 32721349 32721444 -209942909 + L1MCa LINE L1 1931 2025 -4401 2233 104 3 0 chr1 32721444 32721731 -209942622 - AluSx SINE Alu -24 288 1 312 235 44 59 chr1 32721731 32721771 -209942582 + L1MCa LINE L1 2025 2064 -4362 211 93 47 0 chr1 32721776 32721819 -209942534 + (TA)n Simple_repeat Simple_repeat 2 46 0 1971 125 36 11 chr1 32721819 32722100 -209942253 - AluSx SINE Alu -24 288 1 311 235 41 41 chr1 32722104 32722202 -209942151 + L1MC4 LINE L1 6608 6705 -1337 309 206 41 72 chr1 32722140 32722237 -209942116 - L1MC4 LINE L1 -1337 6705 6612 * 649 202 0 0 chr1 32722257 32722361 -209941992 - FLAM_A SINE Alu -38 104 1 930 256 67 71 chr1 32722364 32722814 -209941539 - L2 LINE L2 -774 2540 2093 1436 158 108 4 chr1 32722814 32723054 -209941299 + AluJo SINE Alu 9 273 -39 625 137 0 24 chr1 32723063 32723187 -209941166 + (GAAA)n Simple_repeat Simple_repeat 1 121 0 2351 101 3 0 chr1 32723188 32723495 -209940858 + AluSg SINE Alu 3 310 0 1498 192 11 11 chr1 32723508 32723794 -209940559 + AluJo SINE Alu 1 286 -26 2111 107 0 48 chr1 32723810 32724120 -209940233 + AluSx SINE Alu 5 299 -13 2300 106 3 3 chr1 32724122 32724433 -209939920 + AluSq SINE Alu 1 311 -2 351 65 0 0 chr1 32724471 32724517 -209939836 + (TCC)n Simple_repeat Simple_repeat 3 48 0 471 254 104 36 chr1 32724598 32724877 -209939476 - HAL1 LINE L1 -1357 1150 853 1628 170 40 53 chr1 32724905 32725110 -209939243 - AluJo SINE Alu -16 296 90 189 0 0 0 chr1 32725110 32725131 -209939222 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2173 117 0 0 chr1 32725131 32725413 -209938940 - AluSx SINE Alu -30 282 1 1628 170 40 53 chr1 32725413 32725506 -209938847 - AluJo SINE Alu -220 92 1 2601 52 0 3 chr1 32725513 32725819 -209938534 - AluY SINE Alu -6 305 1 1077 104 0 0 chr1 32725819 32725954 -209938399 - AluSq/x SINE Alu -178 135 1 800 103 0 0 chr1 32726017 32726124 -209938229 + AluSg/x SINE Alu 205 311 -1 2085 109 0 38 chr1 32726644 32726957 -209937396 + AluSx SINE Alu 1 301 -11 1444 159 3 109 chr1 32727018 32727359 -209936994 - AluJb SINE Alu 0 312 1 242 253 274 0 chr1 32727448 32727543 -209936810 - MIR SINE MIR -14 248 128 413 289 112 56 chr1 32727554 32727609 -209936744 + L2 LINE L2 2684 2734 -580 2000 131 3 77 chr1 32727609 32727946 -209936407 - AluSx SINE Alu 0 312 1 413 289 112 56 chr1 32727946 32728139 -209936214 + L2 LINE L2 2734 2946 -368 335 118 0 0 chr1 32728363 32728414 -209935939 - 5S rRNA rRNA -70 51 1 579 239 42 7 chr1 32728518 32728660 -209935693 + MER58A DNA MER1_type 2 148 0 2213 105 0 23 chr1 32728661 32728967 -209935386 + AluSx SINE Alu 1 299 -13 1883 166 0 0 chr1 32728981 32729259 -209935094 + AluJb SINE Alu 3 280 -32 222 62 0 0 chr1 32729259 32729291 -209935062 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 917 176 0 21 chr1 32729294 32729482 -209934871 + L1MB8 LINE L1 5556 5739 -445 2315 90 3 10 chr1 32729482 32729781 -209934572 + AluSp SINE Alu 1 297 -16 576 168 26 0 chr1 32729793 32729906 -209934447 + L1MB8 LINE L1 6063 6178 0 298 114 29 29 chr1 32729938 32730008 -209934345 + GA-rich Low_complexity Low_complexity 5 74 0 1979 110 29 0 chr1 32730031 32730303 -209934050 - AluSx SINE Alu -7 305 26 2181 79 24 3 chr1 32731281 32731571 -209932782 + AluY SINE Alu 1 296 -15 1170 134 41 0 chr1 32731655 32731827 -209932526 + AluSg/x SINE Alu 125 303 -9 769 139 33 0 chr1 32731852 32731974 -209932379 + AluSg/x SINE Alu 169 294 -18 2290 108 16 0 chr1 32732118 32732474 -209931879 - AluSq SINE Alu 0 361 1 2351 106 3 3 chr1 32732474 32732786 -209931567 - AluSq SINE Alu -1 312 1 865 203 0 0 chr1 32732882 32733035 -209931318 + FRAM SINE Alu 23 175 -1 1930 185 0 0 chr1 32733086 32733389 -209930964 - AluJb SINE Alu -8 304 2 2260 112 0 7 chr1 32733615 32733918 -209930435 + AluSq SINE Alu 1 301 -12 957 135 0 0 chr1 32733946 32734079 -209930274 + AluSq/x SINE Alu 1 133 -179 2115 139 7 0 chr1 32734100 32734410 -209929943 + AluSx SINE Alu 1 312 0 2170 116 30 0 chr1 32734495 32734797 -209929556 - AluSx SINE Alu -1 311 1 2439 95 0 0 chr1 32734927 32735233 -209929120 - AluSg SINE Alu -4 306 1 848 185 0 0 chr1 32735333 32735479 -209928874 + FRAM SINE Alu 23 168 -8 328 267 44 0 chr1 32735527 32735617 -209928736 - MIR SINE MIR -14 248 155 565 309 34 39 chr1 32735644 32735720 -209928633 + MIR SINE MIR 23 98 -164 1799 125 16 43 chr1 32735720 32736024 -209928329 - AluJo SINE Alu -16 296 1 565 309 34 39 chr1 32736024 32736154 -209928199 + MIR SINE MIR 98 228 -34 396 0 0 0 chr1 32736716 32736760 -209927593 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1907 112 39 0 chr1 32736765 32737025 -209927328 - AluSg SINE Alu -9 301 32 2176 71 54 0 chr1 32737027 32737307 -209927046 - AluSp SINE Alu -18 295 1 2104 109 0 56 chr1 32737350 32737671 -209926682 - AluSx SINE Alu -9 303 1 1671 113 4 4 chr1 32737833 32738071 -209926282 - AluSx SINE Alu -17 295 58 1891 120 11 33 chr1 32738422 32738546 -209925807 + AluSx SINE Alu 13 138 -174 2283 92 17 0 chr1 32738546 32738841 -209925512 + AluSc SINE Alu 1 300 -9 1999 108 52 3 chr1 32738841 32739127 -209925226 + AluSx SINE Alu 1 300 -12 1891 120 11 33 chr1 32739127 32739275 -209925078 + AluSx SINE Alu 136 280 -32 216 0 0 0 chr1 32739277 32739301 -209925052 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1547 162 0 16 chr1 32739303 32739550 -209924803 + AluJo SINE Alu 1 243 -69 26 0 0 0 chr1 32739567 32739593 -209924760 + AT_rich Low_complexity Low_complexity 1 26 0 1648 181 0 7 chr1 32739618 32739924 -209924429 + AluJb SINE Alu 29 312 0 519 177 35 26 chr1 32741067 32741180 -209923173 - AluJ SINE Alu -1 311 198 2268 188 30 13 chr1 32741182 32741697 -209922656 + LTR27 LTR ERV1 2 490 -11 904 139 134 70 chr1 32741706 32741893 -209922460 - AluJ SINE Alu -113 199 1 210 289 24 0 chr1 32741893 32741976 -209922377 + MIR SINE MIR 122 206 -56 207 0 0 0 chr1 32741983 32742006 -209922347 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1754 153 4 8 chr1 32742008 32742269 -209922084 - AluSx SINE Alu -32 280 21 886 129 30 8 chr1 32742269 32742401 -209921952 - AluJo SINE Alu -176 136 2 25 37 0 37 chr1 32742677 32742700 -209921653 + AT_rich Low_complexity Low_complexity 1 23 -29 2591 60 0 0 chr1 32742700 32742999 -209921354 + AluY SINE Alu 1 299 -12 1514 140 0 9 chr1 32742999 32743220 -209921133 + AluSg/x SINE Alu 66 285 -25 25 37 0 37 chr1 32743220 32743249 -209921104 + AT_rich Low_complexity Low_complexity 21 52 0 2401 96 3 3 chr1 32743288 32743600 -209920753 + AluSp SINE Alu 1 312 -1 962 151 20 0 chr1 32743626 32743772 -209920581 + FRAM SINE Alu 16 164 -12 1979 150 0 10 chr1 32743772 32744078 -209920275 + AluSx SINE Alu 1 303 -9 1178 266 90 26 chr1 32744099 32744594 -209919759 + L2 LINE L2 2795 3301 -12 1982 147 10 0 chr1 32744596 32744888 -209919465 + AluSx SINE Alu 1 295 -17 27 49 0 0 chr1 32744889 32744930 -209919423 + AT_rich Low_complexity Low_complexity 1 41 0 278 218 0 18 chr1 32745036 32745091 -209919262 - MLT1K LTR MaLR -343 245 192 900 221 0 0 chr1 32745206 32745369 -209918984 - FRAM SINE Alu -3 163 1 2228 99 24 0 chr1 32745401 32745694 -209918659 + AluSx SINE Alu 1 300 -12 1322 105 0 0 chr1 32745694 32745866 -209918487 + AluSg/x SINE Alu 134 305 -7 2283 115 0 0 chr1 32746076 32746372 -209917981 - AluSx SINE Alu -16 296 1 678 227 0 40 chr1 32746583 32746620 -209917733 + FAM SINE Alu 21 58 -263 2528 208 92 63 chr1 32746620 32747145 -209917208 + LTR1B LTR ERV1 1 558 -268 1919 176 0 3 chr1 32747145 32747447 -209916906 + AluSx SINE Alu 1 301 -11 2528 208 92 63 chr1 32747447 32747724 -209916629 + LTR1B LTR ERV1 558 826 0 678 227 0 40 chr1 32747724 32747836 -209916517 + FAM SINE Alu 58 164 -21 2295 115 6 6 chr1 32747845 32748158 -209916195 + AluSq SINE Alu 1 313 0 601 171 103 0 chr1 32748178 32748295 -209916058 + AluJb SINE Alu 6 134 -178 1985 153 0 23 chr1 32748296 32748647 -209915706 + AluSx SINE Alu 1 312 0 993 153 0 31 chr1 32748656 32748801 -209915552 - AluJo SINE Alu -21 291 150 3715 92 16 54 chr1 32748801 32748903 -209915450 - MER41A LTR ERV1 0 554 450 2037 119 3 3 chr1 32748903 32749236 -209915117 - AluY SINE Alu 0 333 1 3715 92 16 54 chr1 32749236 32749708 -209914645 - MER41A LTR ERV1 -104 450 1 993 153 0 31 chr1 32749708 32749725 -209914628 - AluJo SINE Alu -162 150 134 853 174 8 0 chr1 32749725 32749857 -209914496 - AluJo SINE Alu -169 133 1 1988 114 18 0 chr1 32749861 32750141 -209914212 - AluSp SINE Alu -23 290 6 1000 154 89 117 chr1 32750944 32751269 -209913084 + LTR54 LTR ERV1 2 317 -193 2097 133 0 13 chr1 32751282 32751584 -209912769 - AluSx SINE Alu -16 296 1 918 138 0 83 chr1 32751584 32751765 -209912588 - AluJo/FRAM SINE Alu -10 302 137 1823 106 103 7 chr1 32751765 32752047 -209912306 - AluSx SINE Alu -3 309 1 1942 114 7 23 chr1 32752047 32752346 -209912007 - AluSx SINE Alu -18 294 1 413 101 0 58 chr1 32752367 32752384 -209911969 - AluSq/x SINE Alu -152 150 134 2258 90 3 0 chr1 32752384 32752684 -209911669 - AluY SINE Alu -10 301 1 413 101 0 58 chr1 32752684 32752735 -209911618 - AluSq/x SINE Alu -168 134 86 773 230 112 0 chr1 32752735 32752922 -209911431 - AluJo SINE Alu -92 220 13 932 175 6 0 chr1 32752933 32753116 -209911237 + LTR54 LTR ERV1 321 504 -6 805 73 91 0 chr1 32753117 32753227 -209911126 + AluSq/x SINE Alu 2 121 -192 2125 93 0 10 chr1 32753348 32753639 -209910714 + AluSg SINE Alu 1 288 -22 226 157 0 59 chr1 32753801 32753852 -209910501 - LTR67 LTR ERVL 0 557 510 839 124 51 56 chr1 32753869 32754047 -209910306 + AluJo SINE Alu 22 198 -114 2160 79 7 0 chr1 32754091 32754397 -209909956 - AluY SINE Alu 0 308 1 1751 173 0 37 chr1 32754533 32754856 -209909497 + AluJo SINE Alu 1 311 -1 235 276 63 55 chr1 32755517 32755644 -209908709 - MIR SINE MIR -102 160 33 496 82 137 0 chr1 32755750 32755823 -209908530 - AluSc SINE Alu -11 298 216 276 122 0 0 chr1 32755823 32755872 -209908481 + Alu SINE Alu 252 300 -2 449 276 112 12 chr1 32755917 32756087 -209908266 - MIR SINE MIR -56 206 20 236 62 0 0 chr1 32756298 32756330 -209908023 + Alu SINE Alu 112 143 -159 1498 176 0 91 chr1 32756330 32756659 -209907694 + AluJb SINE Alu 1 299 -13 2101 110 0 7 chr1 32756661 32756952 -209907401 + AluSg SINE Alu 3 291 -19 2257 93 3 0 chr1 32756954 32757255 -209907098 + AluSq SINE Alu 3 304 -9 423 0 0 0 chr1 32757524 32757571 -209906782 + (TG)n Simple_repeat Simple_repeat 2 48 0 1371 186 54 14 chr1 32757571 32757840 -209906513 - AluJb SINE Alu -12 300 18 262 140 2 0 chr1 32757852 32757903 -209906450 + MIR SINE MIR 100 152 -56 2145 125 3 0 chr1 32758153 32758464 -209905889 + AluSx SINE Alu 1 312 0 308 167 10 39 chr1 32758468 32758517 -209905836 + GA-rich Low_complexity Low_complexity 2 51 -49 2272 85 20 0 chr1 32758517 32758822 -209905531 + AluSx SINE Alu 1 311 -1 308 167 10 39 chr1 32758822 32758874 -209905479 + GA-rich Low_complexity Low_complexity 51 100 0 403 338 108 5 chr1 32759601 32759805 -209904548 + MIR SINE MIR 17 241 -21 256 256 39 26 chr1 32760129 32760207 -209904146 + MIR SINE MIR 15 93 -169 196 306 126 22 chr1 32761335 32761518 -209902835 + L2 LINE L2 2853 3054 -218 237 234 0 0 chr1 32761599 32761663 -209902690 + (CA)n Simple_repeat Simple_repeat 1 64 0 184 188 21 21 chr1 32761665 32761713 -209902640 + L2 LINE L2 3189 3236 -77 4750 160 22 23 chr1 32761728 32762132 -209902221 - L1MB7 LINE L1 -13 6171 5768 1924 152 3 10 chr1 32762132 32762144 -209902209 - AluJb SINE Alu -1 311 300 270 0 0 0 chr1 32762144 32762174 -209902179 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1924 152 3 10 chr1 32762174 32762470 -209901883 - AluJb SINE Alu -12 300 5 4750 160 22 23 chr1 32762470 32763051 -209901302 - L1MB7 LINE L1 -416 5768 5188 2140 109 10 10 chr1 32763157 32763468 -209900885 - AluY SINE Alu 0 311 1 997 200 0 0 chr1 32763482 32763662 -209900691 + AluJb SINE Alu 1 180 -132 466 104 0 0 chr1 32763763 32763830 -209900523 + Alu SINE Alu 240 306 -6 5129 185 31 34 chr1 32763833 32764257 -209900096 - L1MB7 LINE L1 -1062 5084 4660 1962 109 29 4 chr1 32764257 32764562 -209899791 - AluSx SINE Alu 0 312 1 5129 185 31 34 chr1 32764562 32765330 -209899023 - L1MB7 LINE L1 -1486 4660 3895 192 225 56 56 chr1 32765516 32765587 -209898766 - MIR SINE MIR -97 165 95 532 57 0 91 chr1 32765589 32765640 -209898713 - MADE1 DNA Mariner 0 80 39 2234 93 7 0 chr1 32765640 32765940 -209898413 + AluSx SINE Alu 1 302 -10 532 57 0 91 chr1 32765940 32765976 -209898377 - MADE1 DNA Mariner -41 39 1 1119 153 0 0 chr1 32766215 32766391 -209897962 - AluJo/FRAM SINE Alu -3 309 134 1779 177 10 3 chr1 32766392 32766692 -209897661 - AluJb SINE Alu -10 302 1 2059 109 0 0 chr1 32766824 32767131 -209897222 - AluSq SINE Alu 0 313 6 312 262 21 71 chr1 32767246 32767387 -209896966 - MIR SINE MIR -66 196 63 543 250 157 0 chr1 32767924 32768096 -209896257 - MIR SINE MIR -12 250 52 400 277 45 0 chr1 32768255 32768367 -209895986 + MIR SINE MIR 26 142 -120 833 220 8 106 chr1 32768819 32769074 -209895279 - MIR SINE MIR -29 233 4 1714 166 0 3 chr1 32769207 32769490 -209894863 + AluJb SINE Alu 14 295 -17 1798 182 0 3 chr1 32769492 32769805 -209894548 + AluJb SINE Alu 1 312 0 26 0 0 0 chr1 32769805 32769831 -209894522 + AT_rich Low_complexity Low_complexity 1 26 0 202 0 59 29 chr1 32769957 32769991 -209894362 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1533 151 0 0 chr1 32770121 32770376 -209893977 + AluSg SINE Alu 52 306 0 1071 114 57 0 chr1 32770376 32770534 -209893819 + AluSq SINE Alu 131 297 -16 521 293 146 5 chr1 32770555 32770767 -209893586 - MIR SINE MIR -13 249 8 481 278 9 0 chr1 32771574 32771682 -209892671 - MER81 DNA DNA -4 110 2 2165 112 0 0 chr1 32771791 32772087 -209892266 + AluSx SINE Alu 1 296 -16 2076 96 30 0 chr1 32772382 32772683 -209891670 - AluSx SINE Alu -2 310 1 2338 88 0 0 chr1 32772683 32772978 -209891375 - AluSc SINE Alu -14 295 1 2206 86 3 13 chr1 32772981 32773283 -209891070 - AluY SINE Alu -12 299 1 319 225 109 4 chr1 32773893 32774014 -209890339 + MIR3 SINE MIR 12 156 -52 2312 63 0 10 chr1 32774014 32774314 -209890039 + AluY SINE Alu 1 297 -14 209 339 0 0 chr1 32774491 32774550 -209889803 + L2 LINE L2 3153 3211 -61 380 88 0 10 chr1 32774553 32774623 -209889730 - AluSg SINE Alu -219 81 29 1480 89 20 0 chr1 32774628 32774830 -209889523 + AluSg/x SINE Alu 85 290 -19 1818 145 7 16 chr1 32774912 32775222 -209889131 + AluJb SINE Alu 1 307 -5 585 198 0 0 chr1 32775558 32775684 -209888669 + (TG)n Simple_repeat Simple_repeat 2 127 0 333 259 152 0 chr1 32775785 32775897 -209888456 + L2 LINE L2 3181 3309 -4 328 234 32 0 chr1 32776061 32776155 -209888198 + MIR3 SINE MIR 90 186 -22 507 194 31 0 chr1 32776363 32776461 -209887892 - MIR SINE MIR -65 143 43 456 348 6 6 chr1 32777496 32777657 -209886696 - L2 LINE L2 -24 3289 3129 969 140 30 6 chr1 32777663 32777827 -209886526 + FRAM SINE Alu 6 173 -3 2192 114 0 0 chr1 32777830 32778129 -209886224 + AluSx SINE Alu 3 301 -11 1059 76 0 0 chr1 32778129 32778260 -209886093 + AluSg SINE Alu 1 131 -179 2436 77 0 0 chr1 32778264 32778575 -209885778 + AluY SINE Alu 1 311 0 838 176 0 0 chr1 32778615 32778746 -209885607 - FLAM_C SINE Alu 0 133 3 1861 134 0 10 chr1 32778778 32779076 -209885277 + AluSx SINE Alu 1 295 -17 297 250 57 73 chr1 32779173 32779297 -209885056 + L2 LINE L2 3183 3304 -9 1633 195 3 0 chr1 32779556 32779863 -209884490 + AluJo SINE Alu 1 308 -4 374 265 143 31 chr1 32779998 32780200 -209884153 - MIR SINE MIR -14 248 29 189 0 0 0 chr1 32780210 32780231 -209884122 + (A)n Simple_repeat Simple_repeat 1 21 0 2134 121 0 0 chr1 32780325 32780623 -209883730 - AluSx SINE Alu -14 298 1 485 316 19 0 chr1 32780915 32781073 -209883280 - MIR3 SINE MIR -13 195 35 353 164 27 0 chr1 32781136 32781209 -209883144 + MIR SINE MIR 67 141 -67 197 372 0 0 chr1 32781688 32781766 -209882587 + MIR SINE MIR 58 135 -73 754 208 84 25 chr1 32782045 32782216 -209882137 + MIR SINE MIR 44 230 -32 1865 148 3 26 chr1 32782216 32782526 -209881827 - AluJo SINE Alu -9 303 1 754 208 84 25 chr1 32782526 32782556 -209881797 + MIR SINE MIR 230 257 -5 1775 241 151 24 chr1 32782671 32783248 -209881105 + MER21B LTR ERV1 102 751 -112 298 203 165 0 chr1 32784130 32784209 -209880144 + MIR SINE MIR 171 262 0 2061 135 0 0 chr1 32784539 32784843 -209879510 + AluJb SINE Alu 2 305 -7 2145 99 3 7 chr1 32784984 32785286 -209879067 - AluSq SINE Alu -12 301 1 789 156 39 84 chr1 32785325 32785371 -209878982 + MER45A DNA AcHobo 8 55 -1526 2003 138 3 13 chr1 32785371 32785546 -209878807 - AluSx SINE Alu -4 308 136 1982 125 20 3 chr1 32785546 32785849 -209878504 - AluSc SINE Alu -1 308 1 2003 138 3 13 chr1 32785849 32785984 -209878369 - AluSx SINE Alu -176 136 1 789 156 39 84 chr1 32785984 32786038 -209878315 + MER45A DNA AcHobo 55 110 -1471 1810 125 24 20 chr1 32786038 32786335 -209878018 - AluSp SINE Alu -15 298 1 789 156 39 84 chr1 32786335 32786412 -209877941 + MER45A DNA AcHobo 110 178 0 228 321 0 36 chr1 32786455 32786539 -209877814 - MIR SINE MIR -179 83 3 1683 137 8 0 chr1 32786750 32787006 -209877347 - AluSq SINE Alu -6 307 50 342 178 11 11 chr1 32787046 32787123 -209877230 - Alu SINE Alu -253 50 6 492 211 78 28 chr1 32787145 32787287 -209877066 + L2 LINE L2 3156 3304 -9 656 264 53 19 chr1 32787868 32788076 -209876277 - MIR SINE MIR -35 227 13 277 224 0 51 chr1 32788079 32788177 -209876176 + C-rich Low_complexity Low_complexity 4 96 0 31 44 0 0 chr1 32788458 32788503 -209875850 + GC_rich Low_complexity Low_complexity 1 45 0 993 273 81 61 chr1 32789356 32789766 -209874587 - MLT1K LTR MaLR -100 488 71 2024 133 0 16 chr1 32789774 32790090 -209874263 + AluSx SINE Alu 1 311 -1 620 212 180 37 chr1 32790092 32790309 -209874044 - MLT1H LTR MaLR -57 492 245 1473 121 5 5 chr1 32790352 32790576 -209873777 - AluSg/x SINE Alu -4 308 85 650 247 70 0 chr1 32791580 32791766 -209872587 - MIR SINE MIR -12 250 52 404 139 0 0 chr1 32792931 32793003 -209871350 + Alu SINE Alu 241 312 0 2286 91 3 0 chr1 32793013 32793310 -209871043 - AluSp SINE Alu -15 298 1 868 173 0 0 chr1 32793312 32793445 -209870908 - AluJo/FLAM SINE Alu -169 133 1 269 269 0 0 chr1 32793481 32793548 -209870805 - L2 LINE L2 -49 3223 3157 345 291 39 8 chr1 32793559 32793686 -209870667 - MER5A DNA MER1_type -3 186 56 259 291 55 39 chr1 32793582 32793709 -209870644 + MER5B DNA MER1_type 27 155 -23 * 289 320 79 14 chr1 32793753 32793916 -209870437 + MIR SINE MIR 30 202 -60 883 292 158 3 chr1 32794321 32794670 -209869683 + L3 LINE CR1 857 1259 -318 715 307 13 9 chr1 32794692 32794917 -209869436 + MIR SINE MIR 18 243 -19 273 208 52 39 chr1 32794979 32795056 -209869297 - MIR3 SINE MIR -48 160 83 2298 93 6 0 chr1 32795643 32795954 -209868399 + AluSp SINE Alu 1 313 0 335 269 144 38 chr1 32796067 32796227 -209868126 + MIR SINE MIR 12 188 -74 942 179 0 0 chr1 32796240 32796440 -209867913 + AluJb SINE Alu 140 339 0 272 257 107 71 chr1 32796474 32796614 -209867739 - MIR SINE MIR -35 227 83 383 284 60 0 chr1 32798100 32798216 -209866137 + MIR3 SINE MIR 13 135 -73 339 241 69 26 chr1 32798256 32798392 -209865961 - MIR SINE MIR -63 145 48 1579 136 114 0 chr1 32799753 32800026 -209864327 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr1 32800101 32800121 -209864232 + (A)n Simple_repeat Simple_repeat 1 20 0 1541 174 6 42 chr1 32800526 32800837 -209863516 + AluJo SINE Alu 1 300 -12 1182 159 0 5 chr1 32800915 32801081 -209863272 - AluSg/x SINE Alu -28 282 116 222 37 0 0 chr1 32801081 32801108 -209863245 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1182 159 0 5 chr1 32801108 32801142 -209863211 - AluSg/x SINE Alu -194 116 83 920 132 0 0 chr1 32801147 32801276 -209863077 - AluSq/x SINE Alu -183 129 1 6574 72 33 43 chr1 32801729 32802692 -209861661 - SVA Other Other 0 1386 433 1859 124 29 14 chr1 32802705 32803051 -209861302 - SVA Other Other -592 794 444 308 200 50 38 chr1 32804272 32804352 -209860001 + MIR SINE MIR 64 144 -64 187 179 51 0 chr1 32804392 32804431 -209859922 + L2 LINE L2 3192 3232 -81 2113 126 14 0 chr1 32804621 32804914 -209859439 + AluSx SINE Alu 1 297 -15 388 165 39 48 chr1 32804994 32805097 -209859256 - MIR SINE MIR -1 261 160 1793 171 13 3 chr1 32805146 32805445 -209858908 - AluJo SINE Alu -10 302 1 645 248 58 50 chr1 32806182 32806440 -209857913 + MIR SINE MIR 3 262 0 436 285 44 32 chr1 32806557 32806715 -209857638 + MIR3 SINE MIR 24 183 -25 838 169 14 7 chr1 32806755 32806897 -209857456 - AluJo/FRAM SINE Alu -3 309 167 521 195 0 0 chr1 32806897 32806984 -209857369 - FRAM/FAM SINE Alu -90 86 1 218 158 0 0 chr1 32807289 32807327 -209857026 - MIR SINE MIR -43 219 182 478 266 33 94 chr1 32807328 32807603 -209856750 - MIR SINE MIR -3 259 2 191 162 27 0 chr1 32807641 32807678 -209856675 + MIR SINE MIR 117 154 -108 349 229 140 21 chr1 32807753 32807921 -209856432 + MIR SINE MIR 67 262 0 191 389 0 0 chr1 32808495 32808585 -209855768 + MIR SINE MIR 77 166 -96 199 298 32 23 chr1 32808834 32808971 -209855382 - MIR SINE MIR -14 248 31 1836 106 0 4 chr1 32809167 32809402 -209854951 + AluSq SINE Alu 1 234 -79 359 255 10 20 chr1 32809462 32809564 -209854789 - MIR SINE MIR -78 184 84 22 35 0 0 chr1 32809694 32809723 -209854630 + AT_rich Low_complexity Low_complexity 1 29 0 1582 157 51 20 chr1 32809828 32809944 -209854409 + AluJo SINE Alu 1 112 -200 432 0 0 0 chr1 32809944 32809992 -209854361 + (TC)n Simple_repeat Simple_repeat 2 49 0 261 0 0 0 chr1 32809991 32810020 -209854333 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 1582 157 51 20 chr1 32809992 32810026 -209854327 + AluJo SINE Alu 112 143 -169 2424 104 3 0 chr1 32810026 32810335 -209854018 + AluSp SINE Alu 1 310 -3 1582 157 51 20 chr1 32810335 32810504 -209853849 + AluJo SINE Alu 143 302 -10 1716 93 86 91 chr1 32810644 32810680 -209853673 + L1MA3 LINE L1 5922 5957 -348 2410 61 0 0 chr1 32810680 32811002 -209853351 + AluY SINE Alu 2 323 0 1716 93 86 91 chr1 32811002 32811035 -209853318 + L1MA3 LINE L1 5957 5989 -316 823 141 0 15 chr1 32811035 32811170 -209853183 + FLAM_C SINE Alu 1 133 0 1716 93 86 91 chr1 32811170 32811329 -209853024 + L1MA3 LINE L1 5989 6152 -153 2475 86 0 3 chr1 32811329 32811632 -209852721 + AluSq SINE Alu 6 307 -6 1716 93 86 91 chr1 32811632 32811786 -209852567 + L1MA3 LINE L1 6152 6305 0 615 278 32 16 chr1 32812098 32812285 -209852068 + MIR SINE MIR 20 209 -53 430 254 106 0 chr1 32812430 32812572 -209851781 + MIR SINE MIR 81 237 -25 313 211 40 0 chr1 32812596 32812672 -209851681 + MIR3 SINE MIR 109 187 -21 207 0 0 0 chr1 32812863 32812886 -209851467 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 905 169 26 53 chr1 32812912 32813101 -209851252 + AluJb SINE Alu 85 268 -44 239 320 13 0 chr1 32813306 32813384 -209850969 - L2 LINE L2 -8 3305 3227 226 280 140 10 chr1 32813393 32813493 -209850860 + MIR SINE MIR 33 145 -63 1468 189 0 8 chr1 32813612 32813871 -209850482 + AluJb SINE Alu 1 257 -55 265 264 0 44 chr1 32814818 32814909 -209849444 + MIR SINE MIR 57 143 -65 439 293 208 0 chr1 32814939 32815151 -209849202 - MIR SINE MIR -2 260 5 495 209 20 40 chr1 32815153 32815301 -209849052 - MIR SINE MIR -54 208 64 2109 134 0 3 chr1 32815383 32815675 -209848678 + AluSx SINE Alu 1 291 -21 2331 87 10 10 chr1 32815684 32815984 -209848369 + AluSx SINE Alu 1 300 -12 191 159 23 23 chr1 32816211 32816255 -209848098 - L2 LINE L2 -8 3305 3262 376 276 112 40 chr1 32816277 32816429 -209847924 + MIR SINE MIR 49 211 -51 366 246 282 5 chr1 32816402 32816597 -209847756 - MIR SINE MIR 0 262 14 * 1965 138 27 3 chr1 32816885 32817182 -209847171 + AluSx SINE Alu 6 309 -3 2391 114 0 0 chr1 32817182 32817490 -209846863 + AluSc SINE Alu 1 308 -1 287 248 138 9 chr1 32817756 32817865 -209846488 + MIR SINE MIR 14 136 -126 332 200 0 0 chr1 32818041 32818101 -209846252 + Tigger5 DNA MER2_type 2264 2323 0 248 267 158 17 chr1 32818428 32818548 -209845805 + L3 LINE CR1 1430 1566 -11 2399 56 0 14 chr1 32818764 32819073 -209845280 + AluY SINE Alu 1 305 0 333 92 10 0 chr1 32819112 32819181 -209845172 - Alu SINE Alu 0 302 250 2334 111 3 0 chr1 32819281 32819587 -209844766 - AluSx SINE Alu -5 307 1 603 216 67 58 chr1 32819713 32819921 -209844432 - MIR SINE MIR -33 229 20 277 311 117 62 chr1 32820435 32820506 -209843847 + L2 LINE L2 2643 2709 -563 2216 106 7 0 chr1 32820506 32820808 -209843545 + AluSx SINE Alu 2 305 0 277 311 117 62 chr1 32820808 32820885 -209843468 + L2 LINE L2 2709 2780 -492 952 146 5 102 chr1 32820885 32820948 -209843405 - MER5A DNA MER1_type -2 187 119 2492 60 0 0 chr1 32820948 32821233 -209843120 + AluSc SINE Alu 1 285 -24 952 146 5 102 chr1 32821233 32821375 -209842978 - MER5A DNA MER1_type -70 119 2 277 311 117 62 chr1 32821375 32821818 -209842535 + L2 LINE L2 2780 3271 -1 2324 109 7 0 chr1 32821906 32822208 -209842145 - AluSx SINE Alu -8 304 1 242 256 151 0 chr1 32822208 32822294 -209842059 - L2 LINE L2 -23 3290 3192 2434 77 0 29 chr1 32822365 32822677 -209841676 + AluSp SINE Alu 2 304 -9 386 308 76 27 chr1 32822739 32822924 -209841429 - MIR SINE MIR -35 227 34 1320 258 142 57 chr1 32823073 32823666 -209840687 + MER115 DNA AcHobo 51 693 0 243 228 167 18 chr1 32823990 32824104 -209840249 - MIR SINE MIR -14 248 118 574 286 15 44 chr1 32824111 32824317 -209840036 + MIR SINE MIR 57 256 -6 2178 103 0 7 chr1 32824319 32824664 -209839689 + AluSc SINE Alu 1 343 0 264 312 11 0 chr1 32824774 32824867 -209839486 - MIR3 SINE MIR -4 204 111 1942 167 0 3 chr1 32825215 32825509 -209838844 + AluJo SINE Alu 1 293 -19 2200 118 0 3 chr1 32825515 32825820 -209838533 + AluSx SINE Alu 2 305 -7 948 98 0 0 chr1 32825820 32825942 -209838411 + AluSq SINE Alu 134 255 -58 189 0 0 0 chr1 32825948 32825969 -209838384 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1071 92 14 0 chr1 32826069 32826211 -209838142 + AluSg/x SINE Alu 155 298 -14 215 246 237 0 chr1 32826363 32826481 -209837872 - MIR SINE MIR -3 259 114 938 201 53 5 chr1 32826543 32826752 -209837601 + MER20 DNA MER1_type 1 219 0 2241 112 0 0 chr1 32826962 32827281 -209837072 + AluSq SINE Alu 1 319 0 280 307 88 44 chr1 32827385 32827457 -209836896 + L3 LINE CR1 1423 1490 -87 781 279 28 4 chr1 32827457 32827711 -209836642 + MIR SINE MIR 3 262 0 280 307 88 44 chr1 32827711 32827775 -209836578 + L3 LINE CR1 1490 1565 -12 * 415 274 6 74 chr1 32827772 32827947 -209836406 + L2 LINE L2 2897 3059 -213 1451 115 0 14 chr1 32828079 32828313 -209836040 + AluSg/x SINE Alu 88 318 0 1767 129 4 12 chr1 32828463 32828711 -209835642 - AluSq SINE Alu -67 246 1 1969 120 16 54 chr1 32828719 32829036 -209835317 - AluSg SINE Alu -5 305 1 1082 91 0 0 chr1 32829036 32829168 -209835185 - AluSq/x SINE Alu -177 136 5 860 192 0 19 chr1 32829194 32829350 -209835003 - FRAM SINE Alu -13 153 1 856 140 33 7 chr1 32829358 32829508 -209834845 + MLT1F1 LTR MaLR 410 563 -4 585 292 22 11 chr1 32829606 32829791 -209834562 + MIR SINE MIR 1 187 -75 434 238 32 40 chr1 32829803 32829929 -209834424 + L2 LINE L2 3177 3301 -12 1927 171 7 0 chr1 32829956 32830266 -209834087 - AluJo SINE Alu 0 312 1 418 220 114 38 chr1 32830268 32830400 -209833953 + L2 LINE L2 3168 3309 -4 183 253 67 40 chr1 32830397 32830472 -209833881 + MER5A DNA MER1_type 64 140 -49 * 727 169 0 8 chr1 32830506 32830630 -209833723 - FLAM_A SINE Alu -9 124 2 2005 152 0 10 chr1 32830641 32830951 -209833402 - AluSx SINE Alu -5 307 1 267 228 109 11 chr1 32831051 32831143 -209833210 - MIR3 SINE MIR -52 156 56 1123 165 0 98 chr1 32831413 32831616 -209832737 + LTR8 LTR ERV1 1 176 -515 2390 84 0 0 chr1 32831616 32831912 -209832441 - AluY SINE Alu -15 296 1 1123 165 0 98 chr1 32831912 32831962 -209832391 + LTR8 LTR ERV1 176 229 -462 1627 145 119 11 chr1 32832173 32832442 -209831911 - AluJb SINE Alu -12 300 3 208 314 50 6 chr1 32832450 32832609 -209831744 - L2 LINE L2 -1605 1709 1544 228 67 0 0 chr1 32832621 32832651 -209831702 + (CAGGG)n Simple_repeat Simple_repeat 4 33 0 211 167 0 30 chr1 32832651 32832662 -209831691 + GA-rich Low_complexity Low_complexity 2 12 -53 2179 88 20 14 chr1 32832662 32832959 -209831394 + AluSx SINE Alu 1 299 -13 211 167 0 30 chr1 32832959 32833013 -209831340 + GA-rich Low_complexity Low_complexity 12 65 0 2215 119 0 3 chr1 32833013 32833307 -209831046 + AluSg SINE Alu 1 293 -17 746 300 50 3 chr1 32833314 32833611 -209830742 + L1MC4a LINE L1 5605 5915 -1893 1655 202 9 25 chr1 32833661 32833978 -209830375 - AluJb SINE Alu 0 312 1 2396 82 7 0 chr1 32833987 32834290 -209830063 - AluSp SINE Alu -8 305 1 1050 428 43 0 chr1 32834363 32834639 -209829714 - AluSc SINE Alu -11 288 1 256 122 0 0 chr1 32834682 32834723 -209829630 + MER41B LTR ERV1 464 504 -131 2077 94 8 0 chr1 32834724 32834989 -209829364 - AluSg SINE Alu -9 301 35 517 239 21 0 chr1 32835352 32835494 -209828859 + LTR16A1 LTR ERVL 307 451 -6 * 1680 182 28 131 chr1 32835475 32835497 -209828856 + LTR8 LTR ERV1 214 237 -454 2334 98 0 7 chr1 32835497 32835802 -209828551 + AluSx SINE Alu 1 303 -9 1680 182 28 131 chr1 32835802 32835827 -209828526 + LTR8 LTR ERV1 237 263 -428 2116 84 0 8 chr1 32835827 32836088 -209828265 + AluSx SINE Alu 39 297 -15 1680 182 28 131 chr1 32836088 32836309 -209828044 + LTR8 LTR ERV1 263 404 -287 1485 95 153 15 chr1 32836309 32836571 -209827782 + AluSg SINE Alu 1 298 -2 1680 182 28 131 chr1 32836571 32836833 -209827520 + LTR8 LTR ERV1 404 691 0 2043 139 13 0 chr1 32837001 32837302 -209827051 - AluSx SINE Alu -7 305 1 2222 125 0 0 chr1 32837317 32837612 -209826741 - AluSg SINE Alu -15 295 1 226 339 16 48 chr1 32837752 32837876 -209826477 - MER5A DNA MER1_type -29 160 41 1601 110 0 0 chr1 32837883 32838083 -209826270 + AluSx SINE Alu 1 200 -112 443 47 47 0 chr1 32838246 32838310 -209826043 + (TTCTCC)n Simple_repeat Simple_repeat 1 67 0 769 141 0 22 chr1 32838313 32838448 -209825905 - FLAM_C SINE Alu 0 133 2 2327 110 3 3 chr1 32838623 32838932 -209825421 + AluSg SINE Alu 1 309 -1 2203 105 0 56 chr1 32839072 32839260 -209825093 - AluSp SINE Alu -6 307 143 2287 84 3 3 chr1 32839260 32839546 -209824807 - AluSg SINE Alu -24 286 1 2203 105 0 56 chr1 32839546 32839680 -209824673 - AluSp SINE Alu -170 143 3 1931 152 0 36 chr1 32840148 32840457 -209823896 - AluSx SINE Alu -14 298 1 354 255 11 11 chr1 32840526 32840620 -209823733 + MER5B DNA MER1_type 67 160 -18 477 265 201 29 chr1 32840648 32840739 -209823614 - L3 LINE CR1 -88 1489 1415 2343 112 7 0 chr1 32840739 32841044 -209823309 - AluSx SINE Alu -5 307 1 477 265 201 29 chr1 32841044 32841231 -209823122 - L3 LINE CR1 -162 1415 1163 241 331 93 17 chr1 32841288 32841460 -209822893 + L2 LINE L2 2731 2915 -399 2172 152 0 0 chr1 32841578 32841887 -209822466 + AluSx SINE Alu 1 309 -3 1800 168 0 11 chr1 32842132 32842418 -209821935 + AluJo SINE Alu 1 283 -29 2111 87 10 21 chr1 32842497 32842808 -209821545 - AluY SINE Alu 0 308 1 2313 92 0 7 chr1 32842830 32843166 -209821187 - AluSg SINE Alu 0 310 1 1873 156 24 0 chr1 32843175 32843464 -209820889 - AluJb SINE Alu -16 296 1 2333 98 7 0 chr1 32843766 32844062 -209820291 + AluY SINE Alu 1 298 -13 2191 135 0 0 chr1 32844075 32844372 -209819981 + AluSq SINE Alu 1 297 -16 1841 149 0 14 chr1 32844402 32844705 -209819648 + AluJb SINE Alu 11 309 0 190 214 0 24 chr1 32844844 32844886 -209819467 - MIR SINE MIR -103 159 119 1169 207 13 13 chr1 32845014 32845241 -209819112 - AluJo SINE Alu -85 227 1 2509 65 7 0 chr1 32845360 32845666 -209818687 - AluY SINE Alu -3 308 1 2345 72 45 0 chr1 32845670 32845961 -209818392 - AluY SINE Alu -7 304 1 1755 164 10 17 chr1 32846048 32846340 -209818013 - AluJb SINE Alu -22 290 1 2380 89 10 0 chr1 32846349 32846653 -209817700 - AluSp SINE Alu -6 307 1 362 165 71 47 chr1 32846733 32846818 -209817535 - MER5A DNA MER1_type 0 189 103 441 215 78 89 chr1 32846882 32846960 -209817393 - MER5A DNA MER1_type 0 189 112 1763 68 4 34 chr1 32846960 32847196 -209817157 - AluY SINE Alu 0 311 83 2643 47 0 3 chr1 32847196 32847497 -209816856 - AluY SINE Alu -11 300 1 441 215 78 89 chr1 32847497 32847608 -209816745 - MER5A DNA MER1_type -75 114 1 495 153 180 18 chr1 32847668 32847779 -209816574 - MER20 DNA MER1_type -90 129 1 1499 141 128 0 chr1 32849205 32849262 -209815091 - MER46B DNA MER2_type -2495 236 188 1830 176 7 7 chr1 32849262 32849557 -209814796 - AluJb SINE Alu -13 299 5 1499 141 128 0 chr1 32849557 32849690 -209814663 - MER46B DNA MER2_type -2543 188 113 1910 168 14 0 chr1 32849690 32849982 -209814371 - AluJo SINE Alu -16 296 1 1499 141 128 0 chr1 32849982 32850103 -209814250 - MER46B DNA MER2_type -2618 113 9 1764 175 133 3 chr1 32850103 32850485 -209813868 + MSTB1 LTR MaLR 1 432 0 384 194 43 11 chr1 32850657 32850750 -209813603 - MER103 DNA DNA -44 122 27 338 174 43 0 chr1 32851163 32851232 -209813121 + LTR37B LTR ERV1 344 415 -53 240 333 75 17 chr1 32851256 32851376 -209812977 + L2 LINE L2 3140 3266 -6 2533 86 0 0 chr1 32851941 32852243 -209812110 - AluSx SINE Alu -9 303 2 201 176 0 0 chr1 32852643 32852677 -209811676 + A-rich Low_complexity Low_complexity 1 34 0 2443 83 0 3 chr1 32853415 32853716 -209810637 + AluSq SINE Alu 1 300 -13 1922 120 10 34 chr1 32853894 32854205 -209810148 + AluSq SINE Alu 1 304 0 181 0 0 0 chr1 32854185 32854244 -209810109 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2188 127 0 3 chr1 32855073 32855380 -209808973 + AluSx SINE Alu 1 306 -6 320 318 93 0 chr1 32855391 32855498 -209808855 - MIR3 SINE MIR -41 167 51 1746 159 65 0 chr1 32855573 32855850 -209808503 + AluJb SINE Alu 1 295 -17 762 182 0 0 chr1 32856181 32856313 -209808040 - FLAM_C SINE Alu 0 133 2 198 0 0 0 chr1 32856749 32856771 -209807582 + (A)n Simple_repeat Simple_repeat 1 22 0 462 256 72 99 chr1 32857225 32857448 -209806905 + MIR SINE MIR 2 218 -44 1699 168 0 27 chr1 32857961 32858253 -209806100 - AluJo SINE Alu -16 296 13 25 0 0 0 chr1 32858368 32858393 -209805960 + AT_rich Low_complexity Low_complexity 1 25 0 2319 105 0 0 chr1 32858394 32858690 -209805663 + AluY SINE Alu 1 296 -15 2186 89 14 10 chr1 32860374 32860667 -209803686 - AluSp SINE Alu -19 294 1 1824 146 53 0 chr1 32861122 32861403 -209802950 - AluJo SINE Alu -16 296 1 21 0 0 0 chr1 32862541 32862562 -209801791 + AT_rich Low_complexity Low_complexity 1 21 0 1958 91 0 0 chr1 32862753 32862994 -209801359 - AluSq SINE Alu -28 285 45 458 153 0 35 chr1 32863197 32863282 -209801071 + FLAM_C SINE Alu 54 135 -8 225 273 0 0 chr1 32863498 32863553 -209800800 - L2 LINE L2 -1 3312 3258 357 313 73 13 chr1 32863951 32864101 -209800252 - MIR3 SINE MIR -12 196 38 1565 172 58 10 chr1 32864478 32864769 -209799584 - AluJb SINE Alu -7 305 1 24 0 0 0 chr1 32865146 32865170 -209799183 + AT_rich Low_complexity Low_complexity 1 24 0 456 244 153 9 chr1 32865298 32865523 -209798830 + MIR SINE MIR 3 262 0 2256 82 11 3 chr1 32866204 32866486 -209797867 + AluSq SINE Alu 11 294 -19 187 379 98 0 chr1 32866916 32867069 -209797284 - L2 LINE L2 -462 2852 2685 2239 77 0 21 chr1 32867088 32867375 -209796978 - AluSc SINE Alu -28 281 1 295 208 0 0 chr1 32867406 32867454 -209796899 - AluJ/monomer SINE Alu -260 48 1 180 0 0 0 chr1 32867480 32867500 -209796853 + (A)n Simple_repeat Simple_repeat 1 20 0 491 248 33 46 chr1 32867953 32868106 -209796247 + MIR3 SINE MIR 51 201 -7 2004 127 17 14 chr1 32868232 32868524 -209795829 - AluSx SINE Alu -19 293 1 369 296 74 30 chr1 32868679 32868882 -209795471 + L1ME4a LINE L1 5568 5779 -342 345 298 80 32 chr1 32868915 32869103 -209795250 - MIR SINE MIR 0 262 66 505 205 45 9 chr1 32869122 32869234 -209795119 + FRAM SINE Alu 60 175 -1 1734 158 10 52 chr1 32869438 32869585 -209794768 + AluJb SINE Alu 1 130 -182 2360 88 0 3 chr1 32869585 32869881 -209794472 + AluSq SINE Alu 1 295 -18 1734 158 10 52 chr1 32869881 32870043 -209794310 + AluJb SINE Alu 130 297 -15 253 248 95 36 chr1 32870093 32870230 -209794123 + L1ME4a LINE L1 5963 6107 -14 2015 128 3 17 chr1 32870532 32870828 -209793525 - AluSx SINE Alu -19 293 2 356 276 83 36 chr1 32870844 32871036 -209793317 - L1ME1 LINE L1 -96 6070 5870 237 247 91 0 chr1 32871222 32871299 -209793054 + L1ME2 LINE L1 6062 6145 -19 277 313 101 32 chr1 32871487 32871704 -209792649 - L2 LINE L2 -938 2376 2145 185 81 0 27 chr1 32871859 32871896 -209792457 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 481 221 35 153 chr1 32871982 32872236 -209792117 + MIR SINE MIR 18 241 -21 2220 116 13 0 chr1 32872303 32872605 -209791748 + AluSx SINE Alu 1 306 -6 1671 78 0 5 chr1 32872661 32872865 -209791488 + AluSg SINE Alu 1 203 -107 1794 140 0 0 chr1 32873029 32873286 -209791067 + AluSq SINE Alu 45 301 -12 343 295 43 14 chr1 32873533 32873672 -209790681 + L1ME LINE L1 5604 5746 -375 3873 154 58 18 chr1 32873814 32874543 -209789810 + L1MB7 LINE L1 5425 6182 -2 261 250 0 0 chr1 32874565 32874613 -209789740 + MER81 DNA DNA 1 48 -66 1462 120 48 0 chr1 32874614 32874823 -209789530 + AluSx SINE Alu 1 219 -93 764 100 10 0 chr1 32874823 32874923 -209789430 + AluSc SINE Alu 92 192 -117 409 224 41 0 chr1 32875088 32875186 -209789167 + MIR SINE MIR 99 200 -62 1764 136 25 3 chr1 32875202 32875488 -209788865 - AluJb SINE Alu -20 292 1 236 255 94 0 chr1 32876115 32876221 -209788132 - L2 LINE L2 -19 3253 3138 532 294 144 0 chr1 32876229 32876423 -209787930 - MIR SINE MIR -1 261 40 451 276 35 39 chr1 32876469 32876672 -209787681 - L2 LINE L2 -276 3037 2836 206 192 0 41 chr1 32877428 32877501 -209786852 + (TTCA)n Simple_repeat Simple_repeat 3 72 0 809 175 41 18 chr1 32877597 32877768 -209786585 - MER45A DNA AcHobo 0 178 4 22 56 0 0 chr1 32878011 32878047 -209786306 + AT_rich Low_complexity Low_complexity 1 36 0 2027 128 0 10 chr1 32878077 32878401 -209785952 - AluSx SINE Alu 0 321 1 442 162 61 10 chr1 32878536 32878635 -209785718 + MIR SINE MIR 156 259 -3 2509 79 0 6 chr1 32878638 32878953 -209785400 - AluSp SINE Alu 0 313 1 822 141 38 113 chr1 32879393 32879499 -209784854 + MER45A DNA AcHobo 1 89 -1492 2188 109 7 0 chr1 32879499 32879793 -209784560 - AluSx SINE Alu -3 309 14 822 141 38 113 chr1 32879793 32879871 -209784482 + MER45A DNA AcHobo 89 171 -7 228 349 0 0 chr1 32879979 32880145 -209784208 + (TG)n Simple_repeat Simple_repeat 1 166 0 279 310 11 0 chr1 32880529 32880703 -209783650 + (TG)n Simple_repeat Simple_repeat 1 176 0 228 329 18 0 chr1 32880621 32880785 -209783568 + G-rich Low_complexity Low_complexity 1 167 0 * 222 291 16 28 chr1 32880827 32881009 -209783344 + (TG)n Simple_repeat Simple_repeat 1 180 0 187 336 53 26 chr1 32881668 32881781 -209782572 + MIR3 SINE MIR 39 154 -54 312 232 14 0 chr1 32882196 32882265 -209782088 - MIR SINE MIR -61 147 78 1525 147 13 93 chr1 32882756 32883069 -209781284 - AluJo SINE Alu -24 288 1 422 254 208 36 chr1 32883227 32883318 -209781035 - L3 LINE CR1 -88 1489 1415 2305 112 7 0 chr1 32883318 32883623 -209780730 - AluSx SINE Alu -5 307 1 422 254 208 36 chr1 32883623 32883810 -209780543 - L3 LINE CR1 -162 1415 1163 212 326 93 17 chr1 32883867 32884039 -209780314 + L2 LINE L2 2731 2915 -399 2119 152 0 0 chr1 32884157 32884466 -209779887 + AluSx SINE Alu 1 309 -3 1751 168 0 11 chr1 32884711 32884997 -209779356 + AluJo SINE Alu 1 283 -29 2380 63 0 3 chr1 32885076 32885385 -209778968 - AluY SINE Alu 0 308 1 2257 105 7 0 chr1 32885387 32885681 -209778672 - AluSx SINE Alu -16 296 1 672 105 58 12 chr1 32885908 32886080 -209778273 + (TA)n Simple_repeat Simple_repeat 1 180 0 38 39 0 0 chr1 32886083 32886135 -209778218 + AT_rich Low_complexity Low_complexity 1 52 0 641 207 7 43 chr1 32886165 32886294 -209778059 + FLAM_A SINE Alu 6 131 -180 2185 119 3 10 chr1 32886294 32886605 -209777748 + AluSc SINE Alu 1 309 0 2335 76 0 7 chr1 32886767 32887055 -209777298 - AluSq SINE Alu -27 286 1 526 198 17 17 chr1 32887056 32887172 -209777181 - MIR SINE MIR -96 166 51 239 33 0 0 chr1 32887768 32887798 -209776555 + MER39B LTR ERV1 20 49 -604 882 203 104 97 chr1 32888404 32888517 -209775836 + MER63C DNA MER1_type 1 112 -948 2121 132 3 0 chr1 32888517 32888813 -209775540 + AluSx SINE Alu 1 297 -15 882 203 104 97 chr1 32888813 32888863 -209775490 + MER63C DNA MER1_type 112 160 -900 1507 198 21 3 chr1 32888863 32889040 -209775313 - AluJo SINE Alu -13 299 114 208 0 62 0 chr1 32889040 32889072 -209775281 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1507 198 21 3 chr1 32889072 32889182 -209775171 - AluJo SINE Alu -198 114 7 882 203 104 97 chr1 32889182 32889397 -209774956 + MER63C DNA MER1_type 160 388 -672 2214 98 17 10 chr1 32889397 32889694 -209774659 - AluSx SINE Alu -13 299 1 882 203 104 97 chr1 32889694 32889869 -209774484 + MER63C DNA MER1_type 388 560 -370 3739 135 51 39 chr1 32889871 32890516 -209773837 + MER39B LTR ERV1 1 653 0 1301 156 40 47 chr1 32890520 32890664 -209773689 + MER63C DNA MER1_type 565 708 -354 1997 108 0 66 chr1 32890664 32890998 -209773355 + AluSx SINE Alu 1 312 0 1301 156 40 47 chr1 32890998 32891129 -209773224 + MER63C DNA MER1_type 708 838 -94 1404 145 0 5 chr1 32891151 32891358 -209772995 - AluJo SINE Alu -23 289 84 745 143 0 32 chr1 32891365 32891491 -209772862 - FLAM_C SINE Alu -9 124 3 501 209 29 0 chr1 32891491 32891596 -209772757 + MER63C DNA MER1_type 818 925 -5 30 0 0 0 chr1 32891658 32891688 -209772665 + AT_rich Low_complexity Low_complexity 1 30 0 331 218 69 20 chr1 32891795 32891896 -209772457 - MIR3 SINE MIR -16 192 87 211 276 81 11 chr1 32891947 32892034 -209772319 - MIR SINE MIR -57 151 59 216 282 27 9 chr1 32892297 32892407 -209771946 - MIR SINE MIR -77 131 20 2338 83 0 7 chr1 32892617 32892917 -209771436 - AluSx SINE Alu 0 312 15 2722 211 78 103 chr1 32893612 32894186 -209770167 + L1M4 LINE L1 5 592 -5950 498 17 0 0 chr1 32894186 32894245 -209770108 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 2722 211 78 103 chr1 32894245 32894278 -209770075 + L1M4 LINE L1 592 624 -5918 939 29 22 22 chr1 32894278 32894417 -209769936 + (TCTA)n Simple_repeat Simple_repeat 1 139 0 2045 135 0 0 chr1 32894417 32894699 -209769654 - AluSx SINE Alu -30 282 1 2722 211 78 103 chr1 32894699 32895044 -209769309 + L1M4 LINE L1 623 928 -5614 2134 132 0 0 chr1 32895044 32895331 -209769022 + AluSx SINE Alu 1 287 -25 2722 211 78 103 chr1 32895331 32895521 -209768832 + L1M4 LINE L1 928 1121 -5421 843 187 0 0 chr1 32895509 32895664 -209768689 + L1M4 LINE L1 4888 5042 -1104 * 1422 155 17 13 chr1 32895665 32895904 -209768449 + AluJb SINE Alu 1 240 -72 1856 105 8 8 chr1 32895906 32896173 -209768180 - AluSx SINE Alu -45 267 1 583 279 90 18 chr1 32896908 32896966 -209767387 - L1MC4 LINE L1 -95 7713 7661 2045 115 17 14 chr1 32896966 32897262 -209767091 - AluSq SINE Alu -16 297 1 583 279 90 18 chr1 32897262 32897696 -209766657 - L1MC4 LINE L1 -147 7661 7274 1187 198 204 9 chr1 32897728 32898071 -209766282 - L1MC4 LINE L1 -1166 6876 6467 2014 128 14 0 chr1 32899441 32899737 -209764616 + AluSq SINE Alu 1 300 -13 1196 144 0 0 chr1 32899737 32899904 -209764449 + AluSg/x SINE Alu 134 300 -12 245 206 63 16 chr1 32900071 32900134 -209764219 + MIR SINE MIR 82 147 -115 238 279 243 15 chr1 32900146 32900282 -209764071 + MER5A DNA MER1_type 1 167 -22 2342 70 25 0 chr1 32900469 32900754 -209763599 - AluY SINE Alu -19 292 1 1713 168 55 7 chr1 32901591 32901882 -209762471 - AluJo SINE Alu -7 305 1 800 178 0 15 chr1 32901922 32902057 -209762296 - FLAM_A SINE Alu 0 133 1 2501 77 0 3 chr1 32902319 32902630 -209761723 + AluY SINE Alu 1 310 -1 2280 99 3 0 chr1 32902730 32903024 -209761329 + AluSp SINE Alu 1 295 -18 1107 203 79 12 chr1 32903134 32903375 -209760978 + AluJo SINE Alu 1 257 -55 2056 129 3 0 chr1 32903804 32904091 -209760262 + AluSx SINE Alu 1 288 -24 1690 182 39 0 chr1 32905314 32905594 -209758759 - AluJo SINE Alu -21 291 1 2158 126 3 7 chr1 32905671 32905981 -209758372 - AluSx SINE Alu -3 309 1 1058 127 0 0 chr1 32906172 32906347 -209758006 - AluSg/x SINE Alu 0 309 135 308 49 24 0 chr1 32906381 32906422 -209757931 + AluY SINE Alu 1 42 -259 235 269 77 0 chr1 32908047 32908125 -209756228 - L2 LINE L2 -58 3255 3172 875 304 183 33 chr1 32908177 32908841 -209755512 - L2 LINE L2 -209 3063 2500 2173 124 3 0 chr1 32908841 32909148 -209755205 - AluSx SINE Alu -4 308 1 875 304 183 33 chr1 32909148 32909161 -209755192 - L2 LINE L2 -772 2500 2490 180 0 0 0 chr1 32909161 32909181 -209755172 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 875 304 183 33 chr1 32909181 32909649 -209754704 - L2 LINE L2 -782 2490 1751 247 330 90 11 chr1 32910234 32910422 -209753931 - L2 LINE L2 -2187 1127 925 1798 179 10 0 chr1 32910527 32910823 -209753530 - AluJb SINE Alu -13 299 1 2413 93 10 0 chr1 32911117 32911419 -209752934 + AluSq SINE Alu 1 305 -8 341 226 64 166 chr1 32911798 32912033 -209752320 + MIR SINE MIR 51 261 -1 2241 126 0 0 chr1 32912409 32912710 -209751643 + AluSx SINE Alu 1 301 -11 1677 144 69 36 chr1 32913049 32913410 -209750943 - THE1C LTR MaLR 0 375 3 1769 156 13 27 chr1 32913459 32913760 -209750593 + AluJb SINE Alu 1 297 -15 564 221 84 0 chr1 32914166 32914320 -209750033 - L1MC4 LINE L1 -144 7898 7732 1889 127 6 48 chr1 32914736 32915050 -209749303 - AluSq SINE Alu -12 301 1 2349 92 0 0 chr1 32915068 32915360 -209748993 - AluY SINE Alu -19 292 1 1928 142 3 38 chr1 32915738 32916054 -209748299 - AluJb SINE Alu -7 305 1 776 176 0 40 chr1 32916058 32916206 -209748147 - FLAM_C SINE Alu 0 143 2 2778 168 30 39 chr1 32916456 32916963 -209747390 - Tigger7 DNA MER2_type -1985 502 1 1711 153 28 17 chr1 32917004 32917162 -209747191 - AluJo SINE Alu -21 291 127 2376 96 0 0 chr1 32917162 32917463 -209746890 - AluSc SINE Alu -8 301 1 1711 153 28 17 chr1 32917463 32917592 -209746761 - AluJo SINE Alu -185 127 1 1087 115 39 0 chr1 32917740 32917896 -209746457 - AluSg/x SINE Alu -15 295 134 2284 99 7 3 chr1 32917898 32918202 -209746151 - AluSx SINE Alu -7 305 1 230 182 23 80 chr1 32918527 32918615 -209745738 - LTR67 LTR ERVL 0 557 475 199 180 20 40 chr1 32918997 32919047 -209745306 + MIR3 SINE MIR 124 172 -36 314 246 0 0 chr1 32919079 32919148 -209745205 + MER5A DNA MER1_type 32 100 -89 249 194 30 15 chr1 32919151 32919218 -209745135 + L1ME LINE L1 5737 5804 -317 628 216 83 62 chr1 32919488 32919649 -209744704 + MIR SINE MIR 7 176 -86 1766 148 21 3 chr1 32919649 32919939 -209744414 - AluSg SINE Alu -15 295 1 628 216 83 62 chr1 32919939 32920018 -209744335 + MIR SINE MIR 176 252 -10 357 339 137 37 chr1 32920643 32920739 -209743614 + L2 LINE L2 2261 2346 -968 1762 188 112 0 chr1 32920739 32921095 -209743258 + MSTD LTR MaLR 1 396 0 357 339 137 37 chr1 32921095 32921399 -209742954 + L2 LINE L2 2346 2701 -613 787 143 0 57 chr1 32921412 32921552 -209742801 - FLAM_C SINE Alu -1 132 1 231 284 42 21 chr1 32921686 32921781 -209742572 + L2 LINE L2 2857 2953 -319 1344 157 103 97 chr1 32921781 32922132 -209742221 - MLT1A1 LTR MaLR -2 363 11 1324 158 69 133 chr1 32922122 32922483 -209741870 + MLT1A1 LTR MaLR 28 365 0 * 346 298 69 8 chr1 32922618 32922749 -209741604 + L2 LINE L2 3134 3272 0 594 262 48 63 chr1 32922770 32923022 -209741331 + MIR SINE MIR 9 256 -6 2134 94 20 44 chr1 32923097 32923394 -209740959 - AluSq SINE Alu -23 290 1 1866 135 40 13 chr1 32923396 32923699 -209740654 - AluJb SINE Alu -1 311 1 2255 108 7 3 chr1 32924185 32924492 -209739861 - AluSx SINE Alu -4 308 1 263 307 122 0 chr1 32924848 32924977 -209739376 - MIR SINE MIR -66 142 9 367 113 0 0 chr1 32925034 32925087 -209739266 - AluSx SINE Alu -7 293 241 1686 101 0 0 chr1 32925087 32925294 -209739059 - AluSx SINE Alu -105 207 1 186 327 0 0 chr1 32925426 32925481 -209738872 + L2 LINE L2 3136 3190 -82 277 276 58 12 chr1 32925882 32926013 -209738340 + MIR SINE MIR 20 152 -73 309 51 0 0 chr1 32926410 32926449 -209737904 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2016 139 0 4 chr1 32926449 32926730 -209737623 - AluSx SINE Alu -32 280 1 274 352 8 16 chr1 32926932 32927060 -209737293 + MIR3 SINE MIR 76 202 -6 307 276 22 45 chr1 32927288 32927345 -209737008 + MIR3 SINE MIR 10 67 -141 2283 117 3 0 chr1 32927345 32927653 -209736700 - AluSq SINE Alu -4 309 1 307 276 22 45 chr1 32927653 32927729 -209736624 + MIR3 SINE MIR 67 140 -68 287 268 87 16 chr1 32927829 32927956 -209736397 - MIR SINE MIR -126 136 1 670 163 15 37 chr1 32927959 32928094 -209736259 - FLAM_A SINE Alu 0 133 2 530 284 113 5 chr1 32928254 32928448 -209735905 + MIR SINE MIR 41 255 -7 195 229 0 0 chr1 32928651 32928686 -209735667 + MIR SINE MIR 85 119 -89 334 300 61 9 chr1 32928921 32929035 -209735318 - MIR3 SINE MIR -110 98 1 896 121 6 55 chr1 32929370 32929535 -209734818 + L1MD2 LINE L1 5779 5935 -307 4346 162 64 22 chr1 32929537 32930327 -209734026 - L1MB8 LINE L1 -10 6168 5413 2284 108 32 40 chr1 32930327 32930705 -209733648 + THE1C LTR MaLR 1 375 0 1973 145 28 0 chr1 32930711 32930994 -209733359 - AluSx SINE Alu -18 294 4 4346 162 64 22 chr1 32930994 32931104 -209733249 - L1MB8 LINE L1 -769 5409 5221 1210 152 117 49 chr1 32931102 32931366 -209732987 + L1MD2 LINE L1 5920 6201 -158 * 2467 215 79 82 chr1 32931372 32931952 -209732401 - MER21B LTR ERV1 -84 779 200 2197 124 0 0 chr1 32931952 32932250 -209732103 - AluSg SINE Alu -12 298 1 2467 215 79 82 chr1 32932250 32932450 -209731903 - MER21B LTR ERV1 -663 200 1 769 158 0 72 chr1 32932450 32932547 -209731806 + L1MD1 LINE L1 6082 6166 -76 2534 72 0 0 chr1 32932547 32932851 -209731502 - AluY SINE Alu -7 304 1 769 158 0 72 chr1 32932851 32932905 -209731448 + L1MD1 LINE L1 6166 6222 -20 563 228 8 31 chr1 32933270 32933397 -209730956 - HsTC2 DNA Tc2 -1772 126 3 661 191 0 0 chr1 32933422 32933532 -209730821 + FLAM_A SINE Alu 1 110 -32 6944 172 172 47 chr1 32933534 32935095 -209729258 + MER52A LTR ERV1 1 1755 0 754 126 17 17 chr1 32935126 32935245 -209729108 + FRAM SINE Alu 50 168 -8 227 271 29 0 chr1 32935385 32935455 -209728898 + HAL1b LINE L1 1197 1268 -80 242 241 0 0 chr1 32936314 32936368 -209727985 + MER3 DNA MER1_type 2 55 -154 1241 234 36 7 chr1 32936373 32936646 -209727707 - MER21B LTR ERV1 -87 776 496 3208 140 57 32 chr1 32936646 32937054 -209727299 + Tigger7 DNA MER2_type 1 428 -305 867 169 22 33 chr1 32937054 32937237 -209727116 + L1PA16 LINE L1 5982 6162 -4 3208 140 57 32 chr1 32937237 32937394 -209726959 + Tigger7 DNA MER2_type 428 580 -153 589 89 151 103 chr1 32937385 32937462 -209726891 + Tigger7 DNA MER2_type 2272 2344 -143 * 1779 148 25 4 chr1 32937462 32937763 -209726590 + AluJb SINE Alu 1 307 0 589 89 151 103 chr1 32937763 32937830 -209726523 + Tigger7 DNA MER2_type 2344 2424 -63 449 240 192 112 chr1 32937830 32938117 -209726236 - MER21B LTR ERV1 -374 489 180 693 184 0 24 chr1 32938121 32938246 -209726107 + FLAM_A SINE Alu 6 127 -15 473 168 89 192 chr1 32938246 32938449 -209725904 - MER21B LTR ERV1 -669 194 13 229 256 96 48 chr1 32938709 32938834 -209725519 - L2 LINE L2 -4 3309 3179 203 269 15 60 chr1 32938915 32938982 -209725371 + L2 LINE L2 3209 3272 0 * 289 265 113 0 chr1 32938981 32939090 -209725263 + MIR SINE MIR 50 172 -63 2110 111 7 20 chr1 32940370 32940676 -209723677 - AluSx SINE Alu -10 302 1 2338 98 0 0 chr1 32940845 32941140 -209723213 - AluSc SINE Alu -14 295 1 443 242 0 0 chr1 32941447 32941546 -209722807 + L2 LINE L2 2214 2312 -1002 31 0 0 0 chr1 32941726 32941757 -209722596 + AT_rich Low_complexity Low_complexity 1 31 0 472 243 199 38 chr1 32941757 32941881 -209722472 - L1ME4a LINE L1 -3 6118 6015 1848 129 92 0 chr1 32941881 32942152 -209722201 - AluSx SINE Alu -16 296 1 472 243 199 38 chr1 32942152 32942373 -209721980 - L1ME4a LINE L1 -106 6015 5717 208 71 71 0 chr1 32942421 32942463 -209721890 + A-rich Low_complexity Low_complexity 2 46 0 2358 90 0 3 chr1 32942473 32942772 -209721581 + AluSg SINE Alu 2 299 -11 203 182 0 0 chr1 32942775 32942808 -209721545 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 315 0 0 0 chr1 32943534 32943569 -209720784 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 468 0 0 0 chr1 32943568 32943620 -209720733 + (TG)n Simple_repeat Simple_repeat 1 52 0 240 211 19 0 chr1 32943942 32943994 -209720359 + L2 LINE L2 3261 3313 0 32 47 0 16 chr1 32944584 32944615 -209719738 + AT_rich Low_complexity Low_complexity 1 31 -32 1690 165 47 7 chr1 32944615 32944894 -209719459 - AluJo SINE Alu -21 291 2 32 47 0 16 chr1 32944894 32944926 -209719427 + AT_rich Low_complexity Low_complexity 31 63 0 21 36 0 0 chr1 32945123 32945151 -209719202 + AT_rich Low_complexity Low_complexity 1 28 0 219 103 0 0 chr1 32945277 32945316 -209719037 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1340 150 0 5 chr1 32945319 32945519 -209718834 - AluSg/x SINE Alu -29 281 83 35 54 0 0 chr1 32945717 32945773 -209718580 + AT_rich Low_complexity Low_complexity 1 56 0 771 153 0 0 chr1 32945773 32945891 -209718462 - FLAM_C SINE Alu -15 118 1 1780 180 0 29 chr1 32945893 32946204 -209718149 - AluJb SINE Alu -10 302 1 654 284 172 16 chr1 32947087 32947202 -209717151 - L2 LINE L2 -6 3307 3211 1659 163 3 51 chr1 32947202 32947515 -209716838 - AluJb SINE Alu -14 298 1 654 284 172 16 chr1 32947515 32947772 -209716581 - L2 LINE L2 -102 3211 2877 227 267 53 27 chr1 32948022 32948097 -209716256 + L2 LINE L2 3214 3290 -23 196 336 9 18 chr1 32948361 32948444 -209715909 + MIR SINE MIR 65 148 -114 2149 114 0 37 chr1 32948444 32948768 -209715585 + AluSx SINE Alu 1 312 0 196 336 9 18 chr1 32948768 32948794 -209715559 + MIR SINE MIR 148 173 -89 1765 152 66 0 chr1 32949187 32949476 -209714877 - AluJb SINE Alu -2 310 3 2497 66 7 0 chr1 32949546 32949847 -209714506 - AluSp SINE Alu -10 303 1 322 306 51 38 chr1 32950871 32951028 -209713325 + MIR SINE MIR 3 161 -101 2112 115 7 3 chr1 32951313 32951601 -209712752 - AluSx SINE Alu -23 289 1 2338 133 3 6 chr1 32951680 32952018 -209712335 - MER1B DNA MER1_type 0 337 1 261 377 22 0 chr1 32952084 32952222 -209712131 - L2 LINE L2 -236 3036 2896 2133 105 56 0 chr1 32952330 32952616 -209711737 - AluSx SINE Alu -10 302 1 1742 147 31 21 chr1 32952945 32953103 -209711250 - AluJo SINE Alu -12 300 136 2353 104 3 3 chr1 32953103 32953411 -209710942 - AluSp SINE Alu -5 308 1 1209 198 0 14 chr1 32953411 32953538 -209710815 - AluJo SINE Alu -177 135 12 1742 147 31 21 chr1 32953411 32953538 -209710815 - AluJo SINE Alu -176 136 12 374 300 73 33 chr1 32953760 32953910 -209710443 - L2 LINE L2 -632 2682 2527 1111 171 11 0 chr1 32954109 32954296 -209710057 - AluJb SINE Alu -4 308 120 739 202 5 62 chr1 32954297 32954405 -209709948 + L1ME3A LINE L1 5940 6035 -135 2390 71 0 0 chr1 32954405 32954712 -209709641 - AluY SINE Alu 0 307 1 739 202 5 62 chr1 32954712 32954795 -209709558 + L1ME3A LINE L1 6035 6121 -49 553 0 82 0 chr1 32954803 32954900 -209709453 + (TA)n Simple_repeat Simple_repeat 1 105 0 1804 120 149 40 chr1 32954902 32955278 -209709075 - MSTA LTR MaLR -11 417 1 263 296 84 70 chr1 32955349 32955690 -209708663 - L2 LINE L2 -202 3070 2716 1760 153 64 7 chr1 32956941 32957223 -209707130 - AluJb SINE Alu -14 298 1 454 271 102 12 chr1 32957480 32957646 -209706707 + MIR3 SINE MIR 17 197 -11 1033 171 0 59 chr1 32958362 32958549 -209705804 + FAM SINE Alu 1 47 -2 512 281 66 36 chr1 32958563 32958671 -209705682 - L1ME4a LINE L1 -34 6087 5984 1777 144 72 7 chr1 32958671 32958949 -209705404 - AluSx SINE Alu -16 296 1 512 281 66 36 chr1 32958949 32959175 -209705178 - L1ME4a LINE L1 -137 5984 5743 534 208 149 0 chr1 32959188 32959342 -209705011 - L1ME4a LINE L1 -433 5688 5512 279 286 155 0 chr1 32959549 32959633 -209704720 - L2 LINE L2 -9 3304 3208 2292 109 0 6 chr1 32959906 32960217 -209704136 - AluSx SINE Alu -2 310 2 281 331 49 31 chr1 32960469 32960632 -209703721 + L2 LINE L2 2410 2575 -739 1633 170 45 7 chr1 32960787 32961076 -209703277 + AluJo SINE Alu 1 300 -12 614 288 119 45 chr1 32961076 32961449 -209702904 + L2 LINE L2 2048 2448 -866 3881 168 77 69 chr1 32961478 32961808 -209702545 - L1MB3 LINE L1 0 6183 5857 1511 161 145 0 chr1 32961808 32962063 -209702290 - AluJo SINE Alu -10 292 1 3881 168 77 69 chr1 32962063 32963709 -209700644 - L1MB3 LINE L1 -326 5857 4195 624 170 0 19 chr1 32963723 32963829 -209700524 - AluJb SINE Alu -15 297 194 2542 78 0 0 chr1 32964209 32964516 -209699837 + AluSx SINE Alu 1 307 -5 341 286 64 47 chr1 32964690 32964917 -209699436 - MIR SINE MIR -11 251 21 236 337 0 11 chr1 32964958 32965047 -209699306 - L2 LINE L2 0 3313 3226 247 321 139 0 chr1 32966646 32966783 -209697570 + L2 LINE L2 2730 2885 -429 * 2514 247 96 57 chr1 32966777 32967072 -209697281 - L2 LINE L2 -1 3312 3030 2416 81 7 0 chr1 32967072 32967370 -209696983 - AluSp SINE Alu -13 300 1 2514 247 96 57 chr1 32967370 32968445 -209695908 - L2 LINE L2 -283 3030 1894 546 148 0 0 chr1 32968445 32968533 -209695820 - FLAM_A SINE Alu -6 136 49 1933 146 6 37 chr1 32968550 32968871 -209695482 + AluSx SINE Alu 1 311 -1 1321 74 6 0 chr1 32969300 32969463 -209694890 - AluSp SINE Alu -16 297 134 2203 99 3 10 chr1 32969463 32969777 -209694576 - AluSp SINE Alu 0 313 9 315 243 108 36 chr1 32970056 32970167 -209694186 + MIR SINE MIR 34 152 -110 714 306 57 9 chr1 32970676 32970905 -209693448 - MIR SINE MIR -17 245 6 2021 128 0 4 chr1 32971103 32971426 -209692927 - AluSc SINE Alu 0 322 1 474 278 26 20 chr1 32971427 32971578 -209692775 - MIR SINE MIR -100 162 11 216 253 38 13 chr1 32972302 32972381 -209691972 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 2540 80 0 0 chr1 32972499 32972799 -209691554 - AluY SINE Alu -11 300 1 525 48 0 0 chr1 32972964 32973026 -209691327 - AluY SINE Alu -255 63 2 1747 155 39 18 chr1 32973054 32973338 -209691015 + AluJb SINE Alu 1 290 -22 894 167 0 0 chr1 32973376 32973508 -209690845 - FLAM_C SINE Alu -1 132 1 237 83 0 0 chr1 32973691 32973727 -209690626 + (GAA)n Simple_repeat Simple_repeat 2 37 0 261 242 128 67 chr1 32975573 32975600 -209688753 - MIR SINE MIR -18 244 220 363 44 0 0 chr1 32975600 32975645 -209688708 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 242 128 67 chr1 32975645 32975766 -209688587 - MIR SINE MIR -42 220 87 201 282 0 0 chr1 32975806 32975845 -209688508 + L2 LINE L2 3245 3283 -30 358 325 122 20 chr1 32976580 32976777 -209687576 - MIR SINE MIR -17 245 29 227 121 0 0 chr1 32979326 32979359 -209684994 - MIR SINE MIR -122 86 54 * 244 287 263 34 chr1 32979357 32979372 -209684981 - MIR SINE MIR -3 259 249 2133 119 17 3 chr1 32979372 32979665 -209684688 + AluSx SINE Alu 1 297 -15 244 287 263 34 chr1 32979665 32979858 -209684495 - MIR SINE MIR -13 249 3 189 156 67 44 chr1 32980148 32980193 -209684160 - MIR SINE MIR -132 76 31 275 345 167 0 chr1 32980420 32980588 -209683765 - MIR SINE MIR -21 241 46 213 335 153 18 chr1 32981475 32981645 -209682708 + MIR3 SINE MIR 16 208 0 261 303 63 46 chr1 32983070 32983214 -209681139 - MIR SINE MIR -62 146 3 424 155 0 24 chr1 32983731 32983815 -209680538 - AluJ/FRAM SINE Alu -6 306 225 393 225 0 106 chr1 32984579 32984691 -209679662 + MIR SINE MIR 22 118 -90 2299 96 21 0 chr1 32984691 32984982 -209679371 - AluSq SINE Alu -11 302 6 393 225 0 106 chr1 32984982 32985011 -209679342 + MIR SINE MIR 118 148 -60 757 112 0 19 chr1 32985012 32985119 -209679234 - AluSg/x SINE Alu -20 292 188 1790 87 0 0 chr1 32985119 32985338 -209679015 - AluSx SINE Alu -93 219 1 1727 172 7 17 chr1 32985340 32985636 -209678717 - AluJb SINE Alu -19 293 1 298 284 11 42 chr1 32985734 32985829 -209678524 + MIR SINE MIR 44 135 -73 784 154 0 0 chr1 32986798 32986921 -209677432 - MER41A LTR ERV1 0 554 432 785 153 12 55 chr1 32986921 32987084 -209677269 - MER41C LTR ERV1 -398 156 1 357 302 89 22 chr1 32987086 32987265 -209677088 + MIR SINE MIR 18 208 -54 575 164 57 16 chr1 32987483 32987605 -209676748 - L2 LINE L2 0 3272 3146 265 128 0 0 chr1 32987988 32988027 -209676326 - 5S rRNA rRNA -82 39 1 205 189 0 0 chr1 32988040 32988077 -209676276 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 409 190 70 20 chr1 32988106 32988206 -209676147 + MIR SINE MIR 36 140 -68 419 94 47 0 chr1 32988298 32988362 -209675991 - FRAM/FAM SINE Alu -94 82 16 21 36 0 0 chr1 32988614 32988642 -209675711 + AT_rich Low_complexity Low_complexity 1 28 0 2086 133 7 0 chr1 32988642 32988928 -209675425 - AluSx SINE Alu -24 288 1 218 323 317 0 chr1 32988928 32989114 -209675239 + L2 LINE L2 2992 3236 -36 2036 107 0 11 chr1 32990212 32990517 -209673836 + AluSx SINE Alu 17 318 0 333 196 186 0 chr1 32990666 32990763 -209673590 + MIR SINE MIR 78 192 -70 374 285 20 28 chr1 32990809 32991010 -209673343 - MIR SINE MIR 0 262 2 299 262 112 0 chr1 32991041 32991148 -209673205 + MIR3 SINE MIR 82 200 -8 401 297 67 102 chr1 32991602 32991915 -209672438 - L2 LINE L2 -2 3270 2969 424 307 127 33 chr1 32991976 32992220 -209672133 - L2 LINE L2 -443 2871 2605 353 280 223 0 chr1 32992239 32992396 -209671957 - MLT1J LTR MaLR -232 279 88 417 264 46 26 chr1 32992450 32992470 -209671883 + MIR SINE MIR 11 29 -233 2396 93 0 7 chr1 32992470 32992770 -209671583 + AluSx SINE Alu 1 298 -14 417 264 46 26 chr1 32992770 32992923 -209671430 + MIR SINE MIR 29 232 -30 248 316 26 53 chr1 32993344 32993458 -209670895 + MIR SINE MIR 80 190 -72 312 280 72 16 chr1 32994046 32994171 -209670182 + MIR3 SINE MIR 14 145 -63 1694 131 13 93 chr1 32994234 32994547 -209669806 + AluJo SINE Alu 1 288 -24 632 245 21 7 chr1 32994944 32995087 -209669266 + L2 LINE L2 3159 3303 -10 307 238 0 12 chr1 32995230 32995314 -209669039 + L1ME4a LINE L1 5832 5914 -207 2011 135 0 7 chr1 32995341 32995630 -209668723 + AluSx SINE Alu 1 287 -25 24 0 0 0 chr1 32995630 32995654 -209668699 + AT_rich Low_complexity Low_complexity 1 24 0 2375 119 0 0 chr1 32995740 32996052 -209668301 - AluSx SINE Alu 0 312 1 272 319 11 32 chr1 32996071 32996165 -209668188 - L2 LINE L2 -20 3252 3161 279 241 58 11 chr1 32996369 32996456 -209667897 + MIR3 SINE MIR 71 161 -47 2822 117 40 46 chr1 32996500 32996568 -209667785 - L1MA8 LINE L1 -7 6284 6217 1896 150 0 0 chr1 32996568 32996848 -209667505 + AluJb SINE Alu 1 280 -32 212 0 36 0 chr1 32996851 32996879 -209667474 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2822 117 40 46 chr1 32996879 32997327 -209667026 - L1MA8 LINE L1 -76 6215 5767 884 224 0 0 chr1 32997328 32997507 -209666846 - AluSq SINE Alu -17 296 118 864 159 0 0 chr1 32997999 32998125 -209666228 - FLAM_C SINE Alu -17 126 1 1243 149 5 5 chr1 32998130 32998325 -209666028 - AluSp SINE Alu -2 311 117 1421 140 4 0 chr1 32998325 32998554 -209665799 - L1MB3 LINE L1 -173 6010 5781 539 316 87 4 chr1 32999128 32999359 -209664994 - MIR SINE MIR 0 262 13 1904 154 13 10 chr1 32999528 32999839 -209664514 - AluJb SINE Alu 0 312 1 366 215 157 41 chr1 32999840 32999961 -209664392 - MIR SINE MIR -56 152 18 295 299 88 15 chr1 33000112 33000249 -209664104 + MIR3 SINE MIR 4 150 -58 2485 67 3 3 chr1 33000716 33001016 -209663337 - AluSp SINE Alu -13 300 1 297 298 35 0 chr1 33001334 33001448 -209662905 - L1MC4 LINE L1 -1 8041 7924 290 298 0 10 chr1 33001451 33001555 -209662798 + (TCCA)n Simple_repeat Simple_repeat 3 105 0 258 264 28 0 chr1 33002096 33002168 -209662185 + L2 LINE L2 3146 3219 -53 551 234 105 97 chr1 33002509 33002757 -209661596 + MIR SINE MIR 9 258 -4 198 258 10 93 chr1 33003352 33003449 -209660904 - MIR SINE MIR -140 122 34 313 262 43 71 chr1 33003508 33003649 -209660704 - MIR SINE MIR -50 212 76 280 225 99 36 chr1 33004260 33004371 -209659982 - L2 LINE L2 -3 3269 3152 303 176 88 77 chr1 33004603 33004694 -209659659 + MIR SINE MIR 99 190 -72 2089 154 0 10 chr1 33004924 33005235 -209659118 + AluJo SINE Alu 2 309 -3 1197 132 0 0 chr1 33005728 33005895 -209658458 + FRAM SINE Alu 1 165 -11 371 179 115 0 chr1 33005942 33006020 -209658333 - MIR SINE MIR -86 176 90 212 279 0 58 chr1 33006024 33006110 -209658243 - L2 LINE L2 -1 3271 3191 204 109 0 65 chr1 33006358 33006404 -209657949 + (CGGGG)n Simple_repeat Simple_repeat 5 47 0 30 0 0 0 chr1 33006425 33006455 -209657898 + GC_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr1 33006523 33006552 -209657801 + GC_rich Low_complexity Low_complexity 1 29 0 195 129 0 0 chr1 33007083 33007114 -209657239 + (TCCG)n Simple_repeat Simple_repeat 2 32 0 215 235 0 39 chr1 33007451 33007502 -209656851 + C-rich Low_complexity Low_complexity 6 54 0 306 0 0 0 chr1 33007629 33007663 -209656690 + (TG)n Simple_repeat Simple_repeat 1 34 0 189 0 0 0 chr1 33007662 33007683 -209656670 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 195 129 0 0 chr1 33007808 33007839 -209656514 + (TG)n Simple_repeat Simple_repeat 1 31 0 207 279 289 0 chr1 33008046 33008150 -209656203 + MIR SINE MIR 109 242 -20 306 298 133 37 chr1 33008233 33008421 -209655932 - MIR3 SINE MIR 0 208 3 182 243 136 58 chr1 33008580 33008683 -209655670 - MIR SINE MIR -23 239 129 552 225 42 21 chr1 33008766 33008908 -209655445 - MIR SINE MIR -58 204 60 502 248 107 0 chr1 33009249 33009398 -209654955 + MIR SINE MIR 28 192 -70 437 180 20 61 chr1 33009628 33009748 -209654605 - MIR3 SINE MIR -54 154 38 2254 102 3 0 chr1 33009969 33010289 -209654064 - AluSx SINE Alu 0 321 1 309 333 91 40 chr1 33010429 33010681 -209653672 + L2 LINE L2 2592 2856 -458 2883 117 82 21 chr1 33010801 33011114 -209653239 - L1MB3 LINE L1 -7 6176 5818 2413 105 0 6 chr1 33011114 33011428 -209652925 - AluSx SINE Alu 0 312 1 2883 117 82 21 chr1 33011428 33011629 -209652724 - L1MB3 LINE L1 -365 5818 5631 189 0 0 0 chr1 33011636 33011657 -209652696 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2010 135 7 0 chr1 33011660 33011942 -209652411 - AluSx SINE Alu -26 286 3 434 253 156 7 chr1 33012118 33012272 -209652081 + L3 LINE CR1 1391 1567 -10 236 352 93 0 chr1 33012403 33012585 -209651768 - L1ME LINE L1 -200 5921 5723 27 73 0 0 chr1 33012615 33012670 -209651683 + AT_rich Low_complexity Low_complexity 1 55 0 2172 134 0 10 chr1 33012815 33013129 -209651224 + AluJb SINE Alu 1 311 -1 1042 143 0 0 chr1 33013129 33013283 -209651070 + AluJb SINE Alu 134 287 -25 585 264 127 14 chr1 33013901 33014113 -209650240 + MIR SINE MIR 21 256 -6 460 255 10 0 chr1 33014127 33014225 -209650128 + MIR SINE MIR 54 152 -110 2311 136 0 48 chr1 33014260 33014614 -209649739 + MER1B DNA MER1_type 1 337 0 372 317 127 12 chr1 33014943 33015255 -209649098 + L2 LINE L2 2685 3022 -250 24 32 0 0 chr1 33015255 33015286 -209649067 + AT_rich Low_complexity Low_complexity 1 31 0 2367 119 0 0 chr1 33015286 33015597 -209648756 + AluJb SINE Alu 1 311 -1 741 125 0 0 chr1 33015723 33015827 -209648526 - FLAM_C SINE Alu -38 105 2 395 256 178 42 chr1 33015831 33016022 -209648331 + L2 LINE L2 3014 3230 -83 407 315 146 5 chr1 33016405 33016618 -209647735 - L2 LINE L2 -4 3309 3067 460 244 61 0 chr1 33016621 33016736 -209647617 - MIR SINE MIR -74 188 67 214 297 108 0 chr1 33016832 33016906 -209647447 + MIR SINE MIR 33 114 -148 461 296 51 34 chr1 33017591 33017767 -209646586 - MER5A DNA MER1_type -10 179 1 261 269 65 21 chr1 33018382 33018475 -209645878 - MIR SINE MIR -65 143 47 183 207 356 0 chr1 33019008 33019095 -209645258 + L2 LINE L2 3155 3272 0 409 307 124 5 chr1 33020274 33020492 -209643861 + MIR SINE MIR 19 262 0 262 164 55 41 chr1 33020810 33020883 -209643470 - MIR SINE MIR -62 146 73 373 267 0 0 chr1 33020883 33020958 -209643395 - L2 LINE L2 -4 3309 3235 565 176 143 0 chr1 33021026 33021145 -209643208 - MIR SINE MIR -106 156 21 1044 118 0 0 chr1 33021159 33021303 -209643050 - AluSg/x SINE Alu 0 310 167 447 143 0 0 chr1 33021305 33021368 -209642985 - AluS SINE Alu -249 64 2 2203 133 0 13 chr1 33021374 33021682 -209642671 - AluSx SINE Alu -8 304 1 344 227 107 43 chr1 33023131 33023270 -209641083 + MIR SINE MIR 4 152 -64 956 214 11 6 chr1 33023388 33023570 -209640783 + MIR SINE MIR 34 216 -46 1023 165 143 90 chr1 33023573 33023852 -209640501 + AluJo SINE Alu 1 294 -8 475 209 0 12 chr1 33023860 33023946 -209640407 + FRAM/FAM SINE Alu 1 80 -96 529 273 0 37 chr1 33025262 33025423 -209638930 - AluJo SINE Alu -69 243 89 294 315 154 0 chr1 33025423 33025572 -209638781 + L2 LINE L2 3121 3292 -21 2022 146 20 3 chr1 33026025 33026326 -209638027 + AluJo SINE Alu 1 306 -6 239 250 40 0 chr1 33026393 33026469 -209637884 + MER102a DNA MER1_type 252 330 0 354 280 175 20 chr1 33026650 33026850 -209637503 + MIR SINE MIR 1 231 -31 856 169 0 22 chr1 33026992 33027128 -209637225 - FLAM_C SINE Alu 0 133 1 1434 104 9 55 chr1 33027143 33027363 -209636990 - AluSg/x SINE Alu -15 295 86 1419 241 61 64 chr1 33027371 33027865 -209636488 - MER77 LTR ERV1 -5 600 132 665 273 68 23 chr1 33028056 33028294 -209636059 - MIR SINE MIR -11 251 6 207 330 26 52 chr1 33028302 33028337 -209636016 + MIR SINE MIR 19 53 -209 2530 154 96 12 chr1 33028337 33028816 -209635537 - LTR44 LTR ERV1 0 519 1 207 330 26 52 chr1 33028816 33028895 -209635458 + MIR SINE MIR 53 130 -132 336 281 53 76 chr1 33029274 33029445 -209634908 + MIR3 SINE MIR 22 188 -20 309 185 0 0 chr1 33029567 33029632 -209634721 + (CA)n Simple_repeat Simple_repeat 1 65 0 2732 165 15 10 chr1 33029781 33030100 -209634253 - L1MB5 LINE L1 -21 6153 5828 2421 79 0 35 chr1 33030100 33030418 -209633935 - AluY SINE Alu -4 307 1 2732 165 15 10 chr1 33030418 33030620 -209633733 - L1MB5 LINE L1 -346 5828 5629 291 287 43 0 chr1 33031006 33031100 -209633253 + MIR SINE MIR 70 167 -95 217 328 102 32 chr1 33031106 33031292 -209633061 - L2 LINE L2 0 3313 3115 1092 258 72 41 chr1 33031334 33031655 -209632698 - L1MB5 LINE L1 -710 5460 5150 2238 117 0 13 chr1 33031655 33031982 -209632371 - AluSq SINE Alu 0 313 3 1092 258 72 41 chr1 33031982 33032284 -209632069 - L1MB5 LINE L1 -1020 5150 4809 397 271 172 27 chr1 33032284 33032546 -209631807 - L2 LINE L2 -563 2751 2452 245 254 0 14 chr1 33032847 33032918 -209631435 - MLT1L LTR MaLR 0 615 546 239 302 87 40 chr1 33033437 33033491 -209630862 + L2 LINE L2 3137 3187 -85 1807 133 73 28 chr1 33033491 33033777 -209630576 - AluSx SINE Alu -13 299 1 239 302 87 40 chr1 33033777 33033848 -209630505 + L2 LINE L2 3187 3268 -4 567 302 19 23 chr1 33033880 33034095 -209630258 - MLT1L LTR MaLR 0 615 402 466 276 21 14 chr1 33034178 33034323 -209630030 - MIR SINE MIR 0 262 117 8723 163 15 6 chr1 33034482 33036008 -209628345 - L1PB1 LINE L1 -1 6150 4587 2628 59 0 7 chr1 33036008 33036315 -209628038 + AluY SINE Alu 1 305 -6 8723 163 15 6 chr1 33036315 33037463 -209626890 - L1PB1 LINE L1 -1564 4587 3451 2887 135 22 77 chr1 33037473 33038060 -209626293 - LTR10A LTR ERV1 -54 555 1 12363 208 38 56 chr1 33038061 33041069 -209623284 - LTR10A-int LTR ERV1 -3 6646 3694 4706 84 25 1 chr1 33041047 33041774 -209622579 - LTR10A-int LTR ERV1 -4320 2576 1833 * 296 226 151 32 chr1 33041779 33041872 -209622481 + LTR8 LTR ERV1 150 253 -438 3291 102 45 58 chr1 33041907 33042527 -209621826 + LTR10E LTR ERV1 1 612 -21 27841 243 36 36 chr1 33042554 33042996 -209621357 + HERVI LTR ERV1 26 467 -7318 231 61 0 0 chr1 33042996 33043029 -209621324 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 2338 98 0 0 chr1 33043033 33043329 -209621024 - AluY SINE Alu -15 296 1 27841 243 36 36 chr1 33043329 33050640 -209613713 + HERVI LTR ERV1 469 7784 -1 3473 102 30 42 chr1 33050643 33051278 -209613075 + LTR10E LTR ERV1 1 627 -6 3951 177 16 36 chr1 33051313 33052172 -209612181 - LTR10A-int LTR ERV1 -3095 4112 3237 2472 83 0 0 chr1 33052172 33052474 -209611879 - AluY SINE Alu -9 302 1 3951 177 16 36 chr1 33052474 33052743 -209611610 - LTR10A-int LTR ERV1 -3970 3237 953 2303 174 69 63 chr1 33052723 33053008 -209611345 - LTR10A-int LTR ERV1 -3957 2692 2597 * 2349 99 0 0 chr1 33053008 33053301 -209611052 - AluY SINE Alu -18 293 1 2303 174 69 63 chr1 33053301 33053696 -209610657 - LTR10A-int LTR ERV1 -4052 2597 2206 295 202 36 0 chr1 33053694 33053778 -209610575 - LTR10A-int LTR ERV1 -4705 1944 1858 * 375 185 0 0 chr1 33053780 33053872 -209610481 + CT-rich Low_complexity Low_complexity 2 93 0 4156 94 6 22 chr1 33053916 33054561 -209609792 - LTR10A-int LTR ERV1 -4783 1866 1234 2205 122 31 6 chr1 33054543 33054903 -209609450 - LTR10A-int LTR ERV1 -5628 1021 653 * 1010 234 62 4 chr1 33055034 33055307 -209609046 - LTR10A-int LTR ERV1 -6360 289 1 * 2768 139 26 65 chr1 33055303 33055892 -209608461 - LTR10A LTR ERV1 0 609 1 9028 151 44 5 chr1 33055892 33056358 -209607995 - L1PBa LINE L1 -2691 4171 3725 2646 98 0 8 chr1 33056358 33056716 -209607637 - THE1A LTR MaLR 0 355 1 11521 105 14 1 chr1 33056716 33058276 -209606077 - THE1A-int LTR MaLR 0 1580 1 2537 75 31 39 chr1 33058276 33058317 -209606036 - THE1A LTR MaLR 0 355 315 2232 125 0 3 chr1 33058317 33058620 -209605733 + AluSg SINE Alu 1 302 -8 2537 75 31 39 chr1 33058620 33058936 -209605417 - THE1A LTR MaLR -40 315 1 9028 151 44 5 chr1 33058936 33061212 -209603141 - L1PBa LINE L1 -3136 3726 1321 5014 190 92 6 chr1 33061220 33062286 -209602067 - L1PBa LINE L1 -5700 1163 6 300 325 81 51 chr1 33062301 33062498 -209601855 - L2 LINE L2 -11 3302 3100 28 0 0 0 chr1 33062498 33062526 -209601827 + AT_rich Low_complexity Low_complexity 1 28 0 366 214 19 39 chr1 33062548 33062651 -209601702 - Charlie4 DNA MER1_type 0 1961 1861 771 193 0 0 chr1 33062668 33062787 -209601566 - FLAM_C SINE Alu -14 119 1 1475 128 5 0 chr1 33062935 33063139 -209601214 + AluSg/x SINE Alu 85 289 -21 389 280 24 43 chr1 33063139 33063350 -209601003 - Charlie4 DNA MER1_type -110 1851 1645 840 237 18 9 chr1 33063565 33063789 -209600564 - Charlie4 DNA MER1_type -1729 232 7 399 219 0 0 chr1 33063980 33064062 -209600291 - MER81 DNA DNA -32 82 1 227 302 72 7 chr1 33064149 33064288 -209600065 + L1M4 LINE L1 2475 2622 -3524 3843 90 0 25 chr1 33064330 33064854 -209599499 + MER9 LTR ERVK 1 511 0 1038 87 0 0 chr1 33064883 33065010 -209599343 + AluSg SINE Alu 5 131 -179 270 264 160 28 chr1 33065086 33065230 -209599123 + L1ME2 LINE L1 5563 5725 -2083 687 189 0 0 chr1 33065275 33065381 -209598972 + FLAM_A SINE Alu 1 106 -36 439 148 23 0 chr1 33065401 33065489 -209598864 + GA-rich Low_complexity Low_complexity 1 90 0 1150 211 34 49 chr1 33065489 33065896 -209598457 + L1M4 LINE L1 2271 2671 -3475 1333 147 0 92 chr1 33065914 33066220 -209598133 + Tigger2a DNA MER2_type 2 279 -155 243 302 32 21 chr1 33066221 33066410 -209597943 + L1ME2 LINE L1 5762 5952 -212 217 280 61 11 chr1 33066677 33066764 -209597589 + MIR SINE MIR 79 144 -64 3979 45 38 0 chr1 33066842 33067314 -209597039 - LTR2B LTR ERV1 0 490 1 721 160 0 0 chr1 33068264 33068389 -209595964 - L1MB3 LINE L1 -2 6181 6057 2381 84 0 3 chr1 33068389 33068686 -209595667 - AluY SINE Alu -15 296 1 1113 139 37 74 chr1 33068808 33069023 -209595330 + AluSq SINE Alu 97 303 -10 336 335 62 11 chr1 33069023 33069283 -209595070 - L1MC4 LINE L1 -155 7887 7615 246 300 36 27 chr1 33069372 33069482 -209594871 - L1MC5 LINE L1 -582 7379 7269 2120 119 80 14 chr1 33070188 33070540 -209593813 + THE1C LTR MaLR 1 375 0 2218 114 7 0 chr1 33070615 33070904 -209593449 + AluSx SINE Alu 1 291 -21 1036 181 12 0 chr1 33071169 33071340 -209593013 + AluSg/x SINE Alu 135 307 -3 1895 98 0 0 chr1 33073564 33073819 -209590534 + THE1B LTR MaLR 1 255 -109 1897 58 12 0 chr1 33073819 33074076 -209590277 - L1PA8A LINE L1 -572 5559 5300 * 5659 98 5 9 chr1 33074073 33075082 -209589271 - L1MA2 LINE L1 -245 6059 5053 1151 143 0 0 chr1 33075157 33075325 -209589028 - AluSg/x SINE Alu -10 300 133 1062 260 64 12 chr1 33075391 33075718 -209588635 - MLT1I LTR MaLR 0 409 66 606 234 51 17 chr1 33075832 33076007 -209588346 + MLT1I LTR MaLR 221 401 -8 200 228 49 81 chr1 33076342 33076438 -209587915 + MIR SINE MIR 78 171 -91 4040 82 0 4 chr1 33076438 33076951 -209587402 - MER9 LTR ERVK 0 511 1 200 228 49 81 chr1 33076951 33076977 -209587376 + MIR SINE MIR 171 196 -66 * 584 219 70 53 chr1 33076976 33077163 -209587190 + MIR SINE MIR 8 197 -65 369 217 33 50 chr1 33077743 33077863 -209586490 - MIR SINE MIR -48 214 97 181 256 279 12 chr1 33077922 33078008 -209586345 - MIR SINE MIR -67 141 33 355 77 0 0 chr1 33078155 33078207 -209586146 - Alu SINE Alu -1 300 249 722 253 16 46 chr1 33078618 33078858 -209585495 - MIR SINE MIR 0 262 30 265 324 53 48 chr1 33081389 33081596 -209582757 + MIR SINE MIR 14 221 -41 224 299 67 36 chr1 33081949 33082143 -209582210 - L2 LINE L2 -390 2924 2725 2179 91 6 69 chr1 33082532 33082852 -209581501 - AluSx SINE Alu -12 300 1 295 242 38 23 chr1 33083291 33083423 -209580930 + CT-rich Low_complexity Low_complexity 5 138 0 294 292 10 10 chr1 33083959 33084055 -209580298 + MLT1L LTR MaLR 355 450 -165 1908 114 7 39 chr1 33084122 33084239 -209580114 + AluJb SINE Alu 18 137 -175 2369 101 7 0 chr1 33084239 33084545 -209579808 + AluSg SINE Alu 1 308 -2 2269 73 7 0 chr1 33084549 33084823 -209579530 + AluY SINE Alu 19 294 -17 1908 114 7 39 chr1 33084823 33084980 -209579373 + AluJb SINE Alu 140 288 -24 332 264 74 43 chr1 33084980 33085143 -209579210 + MLT1L LTR MaLR 446 613 -2 214 219 62 0 chr1 33085261 33085325 -209579028 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 12916 35 0 0 chr1 33085936 33088077 -209576276 - L1PA5 LINE L1 -222 5932 3791 936 37 0 0 chr1 33088078 33088185 -209576168 - U6 snRNA snRNA 0 107 1 1530 175 14 18 chr1 33088195 33088475 -209575878 - L1MB7 LINE L1 0 6184 5906 24 32 0 0 chr1 33088476 33088507 -209575846 + AT_rich Low_complexity Low_complexity 1 31 0 262 302 75 28 chr1 33088772 33088815 -209575538 - L2 LINE L2 0 3272 3232 1968 118 16 33 chr1 33088815 33089120 -209575233 - AluJb SINE Alu -12 300 1 262 302 75 28 chr1 33089120 33089182 -209575171 - L2 LINE L2 -40 3232 3162 216 286 19 9 chr1 33089723 33089828 -209574525 + (TG)n Simple_repeat Simple_repeat 1 106 0 995 262 119 29 chr1 33089830 33090216 -209574137 - LTR16C LTR ERVL 0 491 71 361 293 40 13 chr1 33090509 33090659 -209573694 + MIR SINE MIR 96 249 -13 277 238 0 24 chr1 33091616 33091700 -209572653 + (TG)n Simple_repeat Simple_repeat 1 82 0 584 230 39 146 chr1 33091757 33092087 -209572266 + MER102a DNA MER1_type 36 330 0 378 111 74 19 chr1 33093066 33093174 -209571179 + T-rich Low_complexity Low_complexity 5 118 0 2035 151 0 3 chr1 33093194 33093493 -209570860 - AluJb SINE Alu -6 306 9 510 240 60 60 chr1 33093821 33094021 -209570332 + MIR SINE MIR 2 201 -61 456 269 10 0 chr1 33094517 33094621 -209569732 - MER81 DNA DNA -1 113 9 1017 130 113 113 chr1 33095168 33095452 -209568901 - LTR10A LTR ERV1 -318 291 8 419 176 0 55 chr1 33095457 33095548 -209568805 + FLAM_C SINE Alu 53 138 -5 593 268 132 4 chr1 33095550 33095778 -209568575 - MLT1C LTR MaLR -57 410 154 282 322 16 8 chr1 33095940 33096061 -209568292 + L2 LINE L2 2222 2343 -971 2241 120 7 0 chr1 33096460 33096759 -209567594 - AluSx SINE Alu -11 301 1 4746 108 49 9 chr1 33096860 33097609 -209566744 - MER52C LTR ERV1 0 1278 500 393 235 11 95 chr1 33097931 33098110 -209566243 + MER69A DNA AcHobo 1 164 -13 228 250 138 0 chr1 33098282 33098362 -209565991 + MIR SINE MIR 63 153 -109 2465 155 30 128 chr1 33099074 33099121 -209565232 + Tigger1 DNA MER2_type 1 51 -2367 224 29 0 29 chr1 33099121 33099155 -209565198 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2465 155 30 128 chr1 33099155 33099352 -209565001 + Tigger1 DNA MER2_type 51 266 -2152 393 22 0 0 chr1 33099352 33099398 -209564955 + (TTTCC)n Simple_repeat Simple_repeat 3 48 0 1619 167 11 39 chr1 33099402 33099684 -209564669 - AluSx SINE Alu -38 274 1 2465 155 30 128 chr1 33099684 33100091 -209564262 + Tigger1 DNA MER2_type 269 594 -1824 627 272 99 5 chr1 33100092 33100283 -209564070 - MIR SINE MIR -46 216 8 352 267 35 0 chr1 33100290 33100376 -209563977 + MIR SINE MIR 79 167 -95 2998 96 2 5 chr1 33100686 33101105 -209563248 - LTR1 LTR ERV1 0 785 368 4946 61 2 0 chr1 33101105 33101742 -209562611 + HERVL-A1 LTR ERVL 5017 5654 0 3190 61 21 7 chr1 33101746 33102173 -209562180 + MLT2A1 LTR ERVL 5 437 -7 2052 150 0 0 chr1 33102275 33102569 -209561784 - AluSx SINE Alu -18 294 1 247 321 28 18 chr1 33102726 33102835 -209561518 - L1MC4a LINE L1 -455 7353 7244 * 848 232 59 29 chr1 33102832 33103125 -209561228 - L1MC4 LINE L1 -727 7234 6957 507 272 121 27 chr1 33103154 33103378 -209560975 + MLT1J2 LTR MaLR 202 446 -4 2228 115 3 13 chr1 33103396 33103710 -209560643 - AluSq SINE Alu -2 311 1 373 218 64 32 chr1 33103711 33103899 -209560454 - HAL1 LINE L1 -1426 1081 888 2162 108 0 4 chr1 33104586 33104904 -209559449 + AluSc SINE Alu 1 317 0 24 0 0 0 chr1 33105038 33105062 -209559291 + AT_rich Low_complexity Low_complexity 1 24 0 2018 119 18 0 chr1 33105077 33105354 -209558999 - AluSx SINE Alu -30 282 1 191 231 141 13 chr1 33105793 33105871 -209558482 + L2 LINE L2 3225 3312 -1 199 219 14 137 chr1 33106718 33106745 -209557608 + MIR SINE MIR 84 113 -95 2055 130 7 3 chr1 33106745 33107045 -209557308 - AluSx SINE Alu -11 301 1 199 219 14 137 chr1 33107045 33107090 -209557263 + MIR SINE MIR 113 147 -61 190 234 0 0 chr1 33107389 33107436 -209556917 + MIR SINE MIR 67 113 -149 2042 122 7 0 chr1 33107891 33108178 -209556175 + AluSx SINE Alu 1 289 -23 618 112 0 56 chr1 33108184 33108291 -209556062 + AluSg/x SINE Alu 210 310 0 1408 217 59 48 chr1 33108318 33108756 -209555597 - LTR47B LTR ERVL 0 443 1 2434 80 7 0 chr1 33109542 33109843 -209554510 + AluSq SINE Alu 1 303 -10 1339 154 0 14 chr1 33110697 33110911 -209553442 - AluJb SINE Alu -15 297 87 2581 126 0 3 chr1 33111162 33111526 -209552827 - THE1B LTR MaLR 0 364 2 1781 140 64 39 chr1 33112229 33112586 -209551767 - THE1C LTR MaLR -9 366 1 562 316 67 72 chr1 33113183 33114018 -209550335 - LTR23-int LTR ERV1 -1726 2921 2091 773 302 79 47 chr1 33115740 33116184 -209548169 - LTR23-int LTR ERV1 -4063 584 127 769 60 0 0 chr1 33116449 33116549 -209547804 - AluY SINE Alu 0 311 212 234 0 0 0 chr1 33117567 33117593 -209546760 + (T)n Simple_repeat Simple_repeat 1 26 0 2445 58 0 10 chr1 33117825 33118136 -209546217 + AluY SINE Alu 1 308 -3 1755 150 0 40 chr1 33118690 33118990 -209545363 + AluJo SINE Alu 5 292 -20 1356 104 152 4 chr1 33119322 33119552 -209544801 - AluSg1 SINE Alu -45 264 1 256 257 0 50 chr1 33119927 33120028 -209544325 - LTR23 LTR ERV1 0 437 342 1235 136 6 0 chr1 33120174 33120372 -209543981 + AluSc SINE Alu 103 301 0 1026 193 5 0 chr1 33120375 33120562 -209543791 - L1M4 LINE L1 -1044 5102 4915 2561 133 31 12 chr1 33121039 33121454 -209542899 - MSTB LTR MaLR 0 426 4 469 262 55 20 chr1 33121739 33121941 -209542412 + L2 LINE L2 2850 3058 -214 10958 112 14 5 chr1 33122211 33123789 -209540564 - Tigger1 DNA MER2_type -645 1773 182 1901 118 85 0 chr1 33123797 33124068 -209540285 - AluSx SINE Alu -18 294 1 346 213 205 8 chr1 33124390 33124512 -209539841 + MIR SINE MIR 55 200 -62 996 119 0 0 chr1 33125381 33125558 -209538795 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 1189 143 0 0 chr1 33125673 33125848 -209538505 + AluY SINE Alu 120 294 -17 596 282 169 9 chr1 33125848 33126274 -209538079 - L2 LINE L2 -1688 1626 1133 191 250 23 0 chr1 33126463 33126507 -209537846 - MIR SINE MIR -117 91 47 251 214 258 44 chr1 33126861 33127225 -209537128 - L2 LINE L2 -1 3312 2871 1739 188 56 28 chr1 33127420 33127888 -209536465 - MER99 DNA DNA -102 726 197 1216 159 18 14 chr1 33127924 33128144 -209536209 + AluJo SINE Alu 87 307 -5 2310 110 0 0 chr1 33128402 33128702 -209535651 + AluSq SINE Alu 1 300 -13 26 30 0 0 chr1 33128861 33128894 -209535459 + AT_rich Low_complexity Low_complexity 1 33 0 2037 154 7 0 chr1 33179087 33179392 -209484961 + AluSx SINE Alu 1 307 -5 518 227 110 32 chr1 33179670 33179824 -209484529 + MIR SINE MIR 78 243 -19 393 262 27 54 chr1 33180049 33180198 -209484155 - MIR3 SINE MIR -58 150 6 706 305 17 30 chr1 33181198 33181434 -209482919 - MIR SINE MIR 0 262 30 1412 233 127 37 chr1 33181655 33182118 -209482235 - MLT1D LTR MaLR 0 505 1 395 299 19 9 chr1 33182939 33183082 -209481271 + MIR SINE MIR 17 160 -51 994 301 59 44 chr1 33183129 33183669 -209480684 + L2 LINE L2 2622 3183 -130 1734 190 0 3 chr1 33183669 33183988 -209480365 - AluSx SINE Alu 0 318 1 994 301 59 44 chr1 33183988 33184119 -209480234 + L2 LINE L2 3183 3311 -2 243 282 82 12 chr1 33184646 33184731 -209479622 + MIR3 SINE MIR 81 171 -37 2330 83 7 17 chr1 33184951 33185252 -209479101 + AluY SINE Alu 1 298 -13 235 254 14 65 chr1 33185473 33185611 -209478742 + (CAGA)n Simple_repeat Simple_repeat 4 134 0 437 245 16 43 chr1 33185622 33185806 -209478547 + (CAGA)n Simple_repeat Simple_repeat 1 179 0 1849 149 0 14 chr1 33185813 33186095 -209478258 + AluJb SINE Alu 35 312 0 207 245 94 0 chr1 33186536 33186589 -209477764 + MIR SINE MIR 78 135 -73 222 247 31 31 chr1 33187942 33188039 -209476314 + (CAGAGA)n Simple_repeat Simple_repeat 4 100 0 1714 110 4 8 chr1 33189134 33189370 -209474983 + AluSx SINE Alu 1 235 -77 6018 57 3 5 chr1 33189370 33190127 -209474226 + L1PA8 LINE L1 5418 6172 0 682 312 24 28 chr1 33190201 33190454 -209473899 + L1MC4a LINE L1 5351 5602 -2206 1607 217 100 43 chr1 33190460 33191082 -209473271 + MLT1E3 LTR MaLR 2 624 0 1848 154 32 7 chr1 33191095 33191380 -209472973 + AluJb SINE Alu 2 293 -19 648 230 38 70 chr1 33191382 33191669 -209472684 + L1MC4a LINE L1 5609 5886 -1922 2094 121 0 0 chr1 33191674 33191954 -209472399 + AluSx SINE Alu 1 280 -32 224 30 30 0 chr1 33191957 33191990 -209472363 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 287 0 53 0 chr1 33192173 33192211 -209472142 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1984 66 0 4 chr1 33192217 33192459 -209471894 - AluSc SINE Alu -38 271 31 423 229 124 49 chr1 33192469 33192775 -209471578 + L1 LINE L1 2973 3301 -2845 2080 132 0 0 chr1 33192784 33193072 -209471281 + AluSx SINE Alu 7 294 -18 322 247 238 8 chr1 33193087 33193254 -209471099 + L1 LINE L1 3252 3379 -2767 2148 124 7 0 chr1 33193254 33193552 -209470801 + AluSx SINE Alu 6 305 -7 2101 112 54 0 chr1 33193556 33193850 -209470503 + AluSg SINE Alu 1 310 0 322 247 238 8 chr1 33193850 33193869 -209470484 + L1 LINE L1 3381 3483 -2663 593 300 74 19 chr1 33193870 33194140 -209470213 - L1MEc LINE L1 -2786 3343 3059 1073 196 81 50 chr1 33194140 33194461 -209469892 - L1ME3 LINE L1 -102 6060 5730 667 297 82 9 chr1 33194447 33194790 -209469563 - L1MEc LINE L1 -3257 2872 2505 * 311 242 164 8 chr1 33194791 33194919 -209469434 - L1MEc LINE L1 -4138 2172 2025 303 172 101 30 chr1 33195242 33195341 -209469012 - L1MEc LINE L1 -5045 1074 969 300 53 0 0 chr1 33195350 33195388 -209468965 + (TA)n Simple_repeat Simple_repeat 2 39 0 2133 120 10 0 chr1 33195388 33195679 -209468674 - AluSx SINE Alu -18 294 1 339 319 57 57 chr1 33195685 33195914 -209468439 - L1ME3 LINE L1 0 6162 5934 625 263 17 12 chr1 33195942 33196182 -209468171 - L1ME3 LINE L1 -216 5954 5714 2121 113 0 29 chr1 33196305 33196615 -209467738 - AluJo SINE Alu -11 301 1 411 221 36 46 chr1 33196626 33196821 -209467532 - L1MEc LINE L1 -5221 898 706 * 690 305 60 45 chr1 33196815 33197323 -209467030 - L1ME3 LINE L1 -1163 4983 4463 2281 117 0 0 chr1 33197323 33197623 -209466730 + AluSx SINE Alu 1 300 -12 690 305 60 45 chr1 33197623 33197731 -209466622 - L1ME3 LINE L1 -1683 4463 4358 2637 132 71 20 chr1 33197737 33198245 -209466108 - Tigger3(Golem) DNA MER2_type -9 3020 2487 414 136 0 0 chr1 33198245 33198304 -209466049 + AluJ/FLAM SINE Alu 2 60 -252 1010 213 8 50 chr1 33198319 33198558 -209465795 - LTR40a LTR ERVL -52 467 239 646 147 26 9 chr1 33198573 33198689 -209465664 + MER65B LTR ERV1 1 118 -413 1013 186 0 0 chr1 33198691 33198863 -209465490 + AluJb SINE Alu 132 303 -9 1703 128 95 0 chr1 33198864 33199168 -209465185 + MER65A LTR ERV1 113 445 0 658 243 74 11 chr1 33199171 33199360 -209464993 - LTR40a LTR ERVL -318 201 1 291 294 0 28 chr1 33199360 33199469 -209464884 - L1ME3 LINE L1 -1861 4285 4180 2040 146 3 10 chr1 33199483 33199784 -209464569 - AluSx SINE Alu -9 303 5 1910 167 42 31 chr1 33200188 33200532 -209463821 + L1 LINE L1 4921 5273 -873 2082 117 10 10 chr1 33200532 33200840 -209463513 + AluSx SINE Alu 1 308 -4 1910 167 42 31 chr1 33200840 33200973 -209463380 + L1 LINE L1 5273 5403 -743 663 187 64 2 chr1 33200997 33201191 -209463162 - MLT2B1 LTR ERVL -258 195 4 1712 144 27 27 chr1 33201428 33201720 -209462633 + AluJo SINE Alu 15 306 -6 255 263 0 75 chr1 33201955 33202035 -209462318 - L2 LINE L2 0 3313 3240 22 0 0 0 chr1 33202839 33202861 -209461492 + AT_rich Low_complexity Low_complexity 1 22 0 2273 99 3 26 chr1 33202865 33203169 -209461184 + AluSx SINE Alu 1 297 -15 434 292 60 46 chr1 33203470 33203785 -209460568 + L2 LINE L2 2850 3241 -31 743 212 0 15 chr1 33205841 33205973 -209458380 - FLAM_A SINE Alu 0 133 4 204 218 0 18 chr1 33206096 33206151 -209458202 + (CAA)n Simple_repeat Simple_repeat 2 55 0 498 281 168 0 chr1 33206602 33206803 -209457550 - MIR SINE MIR -9 253 20 263 287 30 20 chr1 33206842 33206943 -209457410 - MIR SINE MIR -91 117 16 240 237 69 114 chr1 33206935 33207066 -209457287 + L2 LINE L2 3141 3265 -7 * 276 30 0 0 chr1 33207320 33207353 -209457000 + (CA)n Simple_repeat Simple_repeat 2 34 0 287 342 26 8 chr1 33207805 33207922 -209456431 + L2 LINE L2 2686 2804 -510 744 81 0 0 chr1 33208545 33208644 -209455709 - AluSg/x SINE Alu 0 310 212 362 330 157 8 chr1 33209094 33209564 -209454789 + L2 LINE L2 2509 3083 -189 189 171 0 0 chr1 33210338 33210373 -209453980 + (TTA)n Simple_repeat Simple_repeat 2 36 0 250 336 44 35 chr1 33210867 33210980 -209453373 + L2 LINE L2 3159 3272 0 195 267 60 60 chr1 33211269 33211419 -209452934 + MIR3 SINE MIR 22 171 -37 * 785 315 30 4 chr1 33211404 33211639 -209452714 + MIR SINE MIR 9 249 -13 195 42 0 0 chr1 33213525 33213549 -209450804 + (T)n Simple_repeat Simple_repeat 1 24 0 307 232 36 94 chr1 33213760 33213898 -209450455 + L2 LINE L2 2384 2513 -801 219 239 0 0 chr1 33213903 33213949 -209450404 + L2 LINE L2 3266 3311 -2 288 310 9 26 chr1 33215395 33215508 -209448845 + MIR3 SINE MIR 55 165 -43 191 146 24 0 chr1 33216071 33216112 -209448241 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr1 33216242 33216265 -209448088 + GC_rich Low_complexity Low_complexity 1 23 0 219 314 67 19 chr1 33216329 33216434 -209447919 + MIR SINE MIR 31 140 -68 347 311 54 75 chr1 33216725 33217005 -209447348 - L2 LINE L2 -93 3179 2906 281 143 36 0 chr1 33217719 33217775 -209446578 + G-rich Low_complexity Low_complexity 3 60 0 291 283 35 13 chr1 33217855 33217951 -209446402 + MIR SINE MIR 48 145 -63 405 311 76 54 chr1 33219811 33220181 -209444172 + L2 LINE L2 2600 2977 -337 388 345 132 15 chr1 33220253 33220578 -209443775 + L2 LINE L2 2951 3313 0 253 248 0 124 chr1 33220694 33220799 -209443554 + MIR SINE MIR 45 136 -72 235 275 22 22 chr1 33223897 33223988 -209440365 + GA-rich Low_complexity Low_complexity 4 94 0 216 322 0 11 chr1 33224590 33224680 -209439673 - L3b LINE CR1 -347 1236 1148 874 233 63 111 chr1 33225397 33225921 -209438432 - L2 LINE L2 0 3313 2815 291 260 13 13 chr1 33226924 33227001 -209437352 - Charlie4 DNA MER1_type -1 1960 1884 325 297 151 26 chr1 33227136 33227370 -209436983 - MIR SINE MIR 0 262 5 680 286 173 17 chr1 33227489 33227905 -209436448 + L3 LINE CR1 786 1266 -311 247 271 17 0 chr1 33228377 33228436 -209435917 - L2 LINE L2 -3 3269 3210 1809 164 30 7 chr1 33229222 33229527 -209434826 - AluJo SINE Alu 0 312 1 440 261 35 70 chr1 33229527 33229617 -209434736 - MIR SINE MIR -64 198 106 2075 137 0 0 chr1 33229617 33229916 -209434437 + AluSx SINE Alu 5 303 -9 440 261 35 70 chr1 33229916 33230024 -209434329 - MIR SINE MIR -156 106 7 226 247 0 82 chr1 33230112 33230197 -209434156 + MIR SINE MIR 73 150 -112 183 213 0 43 chr1 33230579 33230626 -209433727 + L2 LINE L2 3195 3239 -33 2076 98 11 11 chr1 33230645 33230965 -209433388 - AluSx SINE Alu 0 320 1 322 275 82 4 chr1 33231121 33231237 -209433116 + MIR SINE MIR 46 170 -38 467 317 17 39 chr1 33232030 33232210 -209432143 + MIR SINE MIR 61 236 -26 866 238 73 5 chr1 33232264 33232470 -209431883 - MIR SINE MIR -39 223 4 952 257 160 28 chr1 33232471 33232895 -209431458 + L2 LINE L2 2834 3313 0 604 313 92 5 chr1 33233746 33233963 -209430390 + MIR SINE MIR 20 255 -7 226 414 51 0 chr1 33234816 33234973 -209429380 - MIR SINE MIR -7 255 91 201 276 35 17 chr1 33235110 33235168 -209429185 - MIR SINE MIR -133 129 71 220 289 40 81 chr1 33235416 33235565 -209428788 + MIR3 SINE MIR 33 175 -33 988 179 111 11 chr1 33235917 33236107 -209428246 - MER3 DNA MER1_type 0 209 1 404 256 131 7 chr1 33236190 33236327 -209428026 + MIR SINE MIR 109 262 0 279 224 45 15 chr1 33238484 33238551 -209425802 - L2 LINE L2 -39 3274 3206 562 284 34 64 chr1 33238555 33238791 -209425562 + MIR SINE MIR 34 262 0 424 256 74 8 chr1 33238901 33239022 -209425331 - MIR3 SINE MIR -78 130 2 200 356 22 0 chr1 33239964 33240054 -209424299 - MIR SINE MIR -84 124 33 379 345 104 66 chr1 33240115 33240674 -209423679 - L2 LINE L2 -3 3310 2774 2283 103 0 0 chr1 33240674 33240975 -209423378 + AluSx SINE Alu 1 301 -11 216 67 0 0 chr1 33240981 33241011 -209423342 + (CA)n Simple_repeat Simple_repeat 2 31 0 379 345 104 66 chr1 33241011 33241331 -209423022 - L2 LINE L2 -543 2770 2365 895 253 64 0 chr1 33241545 33241778 -209422575 + MIR SINE MIR 14 261 -1 223 339 54 33 chr1 33243655 33243793 -209420560 - MIR SINE MIR -71 137 14 387 265 82 0 chr1 33247089 33247187 -209417166 + MIR SINE MIR 38 143 -119 276 329 70 35 chr1 33247398 33247541 -209416812 + MIR SINE MIR 113 260 -2 271 225 171 9 chr1 33247780 33247891 -209416462 - MIR3 SINE MIR -70 138 10 428 257 29 14 chr1 33248964 33249104 -209415249 - MIR3 SINE MIR -47 161 20 427 340 50 22 chr1 33251088 33251436 -209412917 - L2 LINE L2 -235 3037 2684 187 292 31 0 chr1 33251826 33251891 -209412462 - MIR SINE MIR -63 145 79 338 230 31 152 chr1 33252305 33252386 -209411967 - L2 LINE L2 0 3272 3223 2218 89 0 3 chr1 33252386 33252712 -209411641 + AluSx SINE Alu 1 325 0 338 230 31 152 chr1 33252712 33252819 -209411534 - L2 LINE L2 -49 3223 3105 207 204 0 0 chr1 33253049 33253093 -209411260 + (CA)n Simple_repeat Simple_repeat 1 44 0 265 252 26 87 chr1 33253877 33253992 -209410361 - MIR SINE MIR -70 138 31 329 270 119 27 chr1 33257228 33257375 -209406978 - MIR3 SINE MIR 0 208 48 537 319 59 15 chr1 33258243 33258447 -209405906 + MIR SINE MIR 50 262 0 708 291 89 5 chr1 33259145 33259358 -209404995 - MIR SINE MIR -30 232 2 219 319 126 22 chr1 33260545 33260727 -209403626 + L2 LINE L2 2368 2568 -746 347 225 23 112 chr1 33260924 33261182 -209403171 + L1MEd LINE L1 797 1031 -5088 1749 165 0 26 chr1 33261226 33261529 -209402824 + AluJo SINE Alu 17 311 -1 394 241 75 8 chr1 33261756 33261885 -209402468 - MIR SINE MIR -58 150 58 349 206 78 71 chr1 33262684 33262825 -209401528 + MIR3 SINE MIR 58 199 -9 298 345 100 22 chr1 33262817 33263204 -209401149 + L2 LINE L2 2593 3099 -173 * 276 296 9 78 chr1 33263341 33263456 -209400897 + MIR SINE MIR 106 212 -50 1049 197 69 26 chr1 33263691 33263996 -209400357 - MER33 DNA MER1_type -6 318 1 235 287 163 31 chr1 33264016 33264145 -209400208 + MIR SINE MIR 85 230 -32 915 287 112 47 chr1 33264682 33265094 -209399259 - L2 LINE L2 -521 2793 2331 1854 158 135 20 chr1 33265094 33265449 -209398904 - MSTD LTR MaLR 0 396 1 915 287 112 47 chr1 33265449 33265617 -209398736 - L2 LINE L2 -983 2331 2175 407 257 30 0 chr1 33266954 33267055 -209397298 + MIR SINE MIR 32 135 -127 2253 81 54 0 chr1 33267429 33267726 -209396627 + AluSq SINE Alu 1 313 0 786 296 137 19 chr1 33268118 33268630 -209395723 + L2 LINE L2 2743 3313 0 422 284 47 16 chr1 33269127 33269254 -209395099 - MIR3 SINE MIR -29 179 49 590 312 195 14 chr1 33269258 33269742 -209394611 - L2 LINE L2 -11 3261 2682 365 273 12 91 chr1 33269755 33269920 -209394433 - L2 LINE L2 -8 3264 3113 211 258 101 90 chr1 33270633 33270811 -209393542 - L2 LINE L2 -144 3128 2949 2501 62 0 0 chr1 33271012 33271320 -209393033 + AluY SINE Alu 1 308 -3 199 309 71 0 chr1 33273064 33273148 -209391205 - MIR3 SINE MIR -34 174 85 2032 114 17 7 chr1 33273305 33273595 -209390758 - AluSx SINE Alu -19 293 1 668 263 74 14 chr1 33274414 33274644 -209389709 - MIR SINE MIR -1 261 18 200 285 200 8 chr1 33274975 33275105 -209389248 - L2 LINE L2 -1 3312 3158 782 264 29 54 chr1 33275350 33275589 -209388764 - MIR SINE MIR -22 240 8 1918 162 0 10 chr1 33275604 33275907 -209388446 - AluJb SINE Alu -12 300 1 263 254 0 0 chr1 33275919 33275978 -209388375 - MIR SINE MIR -124 138 80 446 283 150 17 chr1 33276404 33276584 -209387769 - MIR SINE MIR -10 252 49 715 130 176 0 chr1 33276615 33276746 -209387607 + MER5A DNA MER1_type 1 154 -35 2205 104 27 0 chr1 33276877 33277176 -209387177 - AluSx SINE Alu -5 307 1 1240 178 23 0 chr1 33277181 33277395 -209386958 - MER20 DNA MER1_type 0 219 1 2303 103 6 0 chr1 33277416 33277727 -209386626 - AluSq SINE Alu 0 313 1 214 253 165 13 chr1 33277806 33277885 -209386468 - MIR3 SINE MIR -111 97 7 289 192 23 69 chr1 33278315 33278445 -209385908 + (CAGAGA)n Simple_repeat Simple_repeat 2 125 0 301 354 113 14 chr1 33278452 33278664 -209385689 + L1MEd LINE L1 979 1211 -4908 510 339 90 28 chr1 33278908 33279065 -209385288 - L2 LINE L2 -3 3310 3164 1914 150 0 3 chr1 33279065 33279365 -209384988 + AluJo SINE Alu 1 299 -13 510 339 90 28 chr1 33279365 33279726 -209384627 - L2 LINE L2 -149 3164 2755 2149 125 6 3 chr1 33279773 33280085 -209384268 + AluSq SINE Alu 1 313 0 486 0 0 0 chr1 33280090 33280144 -209384209 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 207 182 0 0 chr1 33280166 33280199 -209384154 + A-rich Low_complexity Low_complexity 4 36 0 634 331 82 13 chr1 33280199 33280516 -209383837 - L2 LINE L2 -614 2700 2362 408 272 46 33 chr1 33281587 33281760 -209382593 - MIR SINE MIR -24 184 8 396 0 0 0 chr1 33282776 33282820 -209381533 + (CA)n Simple_repeat Simple_repeat 2 45 0 405 294 96 7 chr1 33283179 33283325 -209381028 - MIR3 SINE MIR -7 201 43 218 378 0 17 chr1 33284244 33284363 -209379990 + MIR SINE MIR 122 238 -24 327 250 10 40 chr1 33284688 33284788 -209379565 - L2 LINE L2 -214 3058 2962 309 280 124 83 chr1 33284830 33285048 -209379305 + MIR SINE MIR 35 261 -1 509 229 177 17 chr1 33285107 33285282 -209379071 - MIR SINE MIR -12 250 48 2603 69 41 24 chr1 33285613 33285802 -209378551 + MER41A LTR ERV1 1 185 -369 2274 68 0 42 chr1 33285802 33286113 -209378240 + AluY SINE Alu 4 301 -10 2603 69 41 24 chr1 33286113 33286341 -209378012 + MER41A LTR ERV1 185 425 -129 2347 91 0 0 chr1 33286341 33286648 -209377705 - AluSg SINE Alu 0 310 4 1188 101 11 0 chr1 33286648 33286837 -209377516 - MER41A LTR ERV1 -363 191 1 487 135 45 0 chr1 33286843 33286932 -209377421 - AluSg1 SINE Alu -216 93 1 852 121 0 0 chr1 33286932 33287072 -209377281 + MER41B LTR ERV1 496 635 0 222 351 60 75 chr1 33287705 33288104 -209376249 - L2 LINE L2 0 3272 2880 2008 124 10 3 chr1 33288700 33288998 -209375355 + AluJo SINE Alu 1 300 -12 216 294 15 0 chr1 33289481 33289549 -209374804 + G-rich Low_complexity Low_complexity 3 71 0 261 279 117 9 chr1 33290053 33290164 -209374189 - MIR3 SINE MIR -39 169 47 182 247 134 21 chr1 33290137 33290234 -209374119 - L2 LINE L2 -1820 1494 1387 * 245 344 43 0 chr1 33290276 33290369 -209373984 + MIR SINE MIR 87 183 -79 279 236 0 57 chr1 33292547 33292643 -209371710 - MIR3 SINE MIR -45 163 73 1865 246 107 18 chr1 33293284 33293980 -209370373 + L2 LINE L2 2175 2938 -376 1896 141 10 3 chr1 33293980 33294270 -209370083 - AluJb SINE Alu -20 292 1 457 188 130 51 chr1 33294270 33294408 -209369945 + L2 LINE L2 3165 3313 0 573 258 140 27 chr1 33294429 33294650 -209369703 + MIR SINE MIR 15 260 -2 659 299 180 24 chr1 33294668 33295130 -209369223 + L2 LINE L2 2252 2785 -529 508 278 219 22 chr1 33295221 33295541 -209368812 + L2 LINE L2 2926 3308 -5 297 68 0 0 chr1 33296052 33296096 -209368257 + (GA)n Simple_repeat Simple_repeat 1 44 0 252 305 85 9 chr1 33296525 33296639 -209367714 + MIR SINE MIR 30 161 -101 * 636 255 87 5 chr1 33296622 33296818 -209367535 - MIR SINE MIR -1 261 50 1511 151 0 130 chr1 33296827 33297176 -209367177 - AluJb SINE Alu 0 308 2 321 286 163 0 chr1 33297450 33297548 -209366805 - L2 LINE L2 0 3272 3159 379 316 12 19 chr1 33297556 33297717 -209366636 + MIR SINE MIR 26 184 -63 398 299 32 48 chr1 33298351 33298538 -209365815 - MLT1I LTR MaLR -115 294 111 486 296 70 30 chr1 33298839 33299038 -209365315 - MIR SINE MIR -36 226 20 2421 70 3 10 chr1 33299342 33299656 -209364697 - AluSp SINE Alu -1 312 1 390 305 61 35 chr1 33301632 33301829 -209362524 - MIR SINE MIR -13 249 48 616 226 65 0 chr1 33301920 33302075 -209362278 - MIR SINE MIR -6 256 92 799 339 107 19 chr1 33304163 33304650 -209359703 - L3 LINE CR1 -11 1566 1037 209 287 0 14 chr1 33306172 33306249 -209358104 - MIR SINE MIR -78 130 74 266 188 141 0 chr1 33307015 33307079 -209357274 - MIR SINE MIR -113 149 77 272 324 0 0 chr1 33307230 33307298 -209357055 + L2 LINE L2 3246 3313 0 452 273 52 17 chr1 33308566 33308765 -209355588 - MIR SINE MIR -54 208 4 871 261 6 71 chr1 33308776 33308856 -209355497 + L2 LINE L2 2966 3050 -263 1813 149 34 0 chr1 33308856 33309151 -209355202 - AluJo SINE Alu -7 305 1 871 261 6 71 chr1 33309151 33309381 -209354972 + L2 LINE L2 3050 3256 -57 257 341 0 0 chr1 33309432 33309517 -209354836 - MIR SINE MIR -133 129 45 1657 125 114 11 chr1 33310001 33310281 -209354072 - AluSg1 SINE Alu 0 309 1 252 248 33 91 chr1 33310297 33310418 -209353935 - MIR SINE MIR -65 197 84 423 283 27 16 chr1 33310646 33310823 -209353530 + MIR SINE MIR 18 191 -59 324 269 36 17 chr1 33311345 33311472 -209352881 + MIR SINE MIR 34 161 -61 550 305 76 5 chr1 33312538 33312753 -209351600 + MIR SINE MIR 6 240 -22 357 212 288 8 chr1 33312765 33312883 -209351470 - MIR SINE MIR 0 262 112 180 234 0 0 chr1 33314280 33314327 -209350026 + GA-rich Low_complexity Low_complexity 2 48 0 468 296 70 16 chr1 33314394 33314580 -209349773 + MIR SINE MIR 34 229 -33 386 200 76 38 chr1 33314609 33314714 -209349639 - MIR SINE MIR -105 157 49 217 191 21 0 chr1 33315816 33315863 -209348490 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 564 198 86 8 chr1 33316315 33316486 -209347867 - MIR SINE MIR -62 146 9 516 283 18 74 chr1 33316479 33316762 -209347591 - L2 LINE L2 -85 3187 2921 * 423 176 0 0 chr1 33317186 33317277 -209347076 + (TG)n Simple_repeat Simple_repeat 2 92 0 931 184 12 0 chr1 33319261 33319429 -209344924 - AluSg/x SINE Alu -6 304 135 264 319 22 0 chr1 33319747 33319838 -209344515 + MIR SINE MIR 13 105 -157 651 135 72 0 chr1 33319848 33319959 -209344394 + MLT1D LTR MaLR 1 119 -386 21 36 0 0 chr1 33320121 33320149 -209344204 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr1 33320244 33320287 -209344066 + (TG)n Simple_repeat Simple_repeat 1 43 0 299 205 0 72 chr1 33320326 33320409 -209343944 + HAL1 LINE L1 846 922 -1585 1800 90 6 136 chr1 33320930 33321275 -209343078 + AluSx SINE Alu 1 300 -12 878 279 35 4 chr1 33321343 33321503 -209342850 + MIR SINE MIR 1 173 -89 2166 148 157 7 chr1 33321503 33321942 -209342411 + MLT1D LTR MaLR 1 505 0 878 279 35 4 chr1 33321942 33322035 -209342318 + MIR SINE MIR 173 262 0 1929 149 0 0 chr1 33322064 33322359 -209341994 + AluSx SINE Alu 1 295 -17 642 263 22 45 chr1 33322416 33322595 -209341758 - MLT1J LTR MaLR -325 186 12 1949 135 7 3 chr1 33322661 33322958 -209341395 + AluJb SINE Alu 15 312 0 330 280 8 48 chr1 33323001 33323126 -209341227 - HAL1 LINE L1 -156 2351 2232 476 292 31 15 chr1 33323665 33323860 -209340493 - HAL1 LINE L1 -703 1804 1607 2294 99 0 0 chr1 33324017 33324319 -209340034 - AluSx SINE Alu -8 304 3 183 42 0 0 chr1 33324475 33324499 -209339854 + (TC)n Simple_repeat Simple_repeat 1 24 0 1465 205 0 3 chr1 33324500 33324788 -209339565 - AluSx SINE Alu -19 293 7 413 226 124 49 chr1 33324797 33325103 -209339250 - L1M4 LINE L1 -2845 3301 2973 1884 66 0 4 chr1 33325113 33325355 -209338998 + AluSc SINE Alu 31 271 -38 287 0 53 0 chr1 33325361 33325399 -209338954 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 241 237 0 0 chr1 33325411 33325470 -209338883 - L1M4 LINE L1 -3795 2351 2293 1788 186 3 0 chr1 33325535 33325846 -209338507 - AluJo SINE Alu 0 312 1 467 298 145 60 chr1 33326186 33327060 -209337293 - L1M4 LINE L1 -2791 3355 2407 417 231 10 10 chr1 33327063 33327167 -209337186 - MLT1J LTR MaLR 0 511 408 551 289 54 18 chr1 33327173 33327506 -209336847 + LTR33 LTR ERVL 104 512 -9 2988 148 2 8 chr1 33327956 33328442 -209335911 - MER31A LTR ERV1 -2 483 1 324 0 0 0 chr1 33328510 33328546 -209335807 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 2135 133 0 0 chr1 33328546 33329037 -209335316 - AluSg SINE Alu 0 491 1 1772 117 7 11 chr1 33329096 33329370 -209334983 - AluSg SINE Alu -1 309 37 740 141 0 62 chr1 33329370 33329498 -209334855 + AluJb SINE Alu 191 310 -2 181 292 14 0 chr1 33329579 33329651 -209334702 + MIR SINE MIR 28 100 -162 1541 138 17 59 chr1 33330087 33330377 -209333976 + AluJb SINE Alu 27 304 -8 268 248 72 124 chr1 33330651 33330804 -209333549 + MIR SINE MIR 20 164 -98 378 266 26 9 chr1 33331033 33331146 -209333207 + MIR SINE MIR 50 164 -98 1194 200 68 4 chr1 33331170 33331450 -209332903 - MER66B LTR ERV1 0 486 189 202 228 18 0 chr1 33331740 33331797 -209332556 + GA-rich Low_complexity Low_complexity 2 59 0 539 249 116 0 chr1 33331962 33332135 -209332218 + MIR SINE MIR 70 262 0 473 295 250 3 chr1 33332151 33332439 -209331914 - L2 LINE L2 -40 3273 2915 * 842 292 133 38 chr1 33332438 33333105 -209331248 - L2 LINE L2 -352 2962 2232 199 245 0 149 chr1 33333229 33333271 -209331082 - MIR SINE MIR -127 135 113 2627 92 59 15 chr1 33333271 33333661 -209330692 + L1PA11 LINE L1 5768 6174 0 199 245 0 149 chr1 33333661 33333712 -209330641 - MIR SINE MIR -149 113 56 181 335 7 79 chr1 33333760 33333912 -209330441 - L2 LINE L2 -459 2855 2715 190 241 156 71 chr1 33333977 33334118 -209330235 - L2 LINE L2 -3 3310 3158 335 258 84 15 chr1 33334234 33334365 -209329988 + MIR3 SINE MIR 58 201 -7 278 325 24 32 chr1 33335448 33335574 -209328779 - MIR3 SINE MIR -48 160 36 619 286 101 9 chr1 33335650 33335877 -209328476 + MIR SINE MIR 6 253 -9 273 229 229 0 chr1 33335900 33336005 -209328348 - MIR3 SINE MIR -6 202 74 317 283 47 28 chr1 33336188 33336294 -209328059 - MIR SINE MIR -108 154 47 558 256 25 12 chr1 33336445 33336605 -209327748 + MER103 DNA DNA 3 164 -2 217 213 223 21 chr1 33336721 33336815 -209327538 - MER5A DNA MER1_type -22 167 55 360 293 68 8 chr1 33336842 33337001 -209327352 + MIR SINE MIR 23 190 -59 451 295 26 81 chr1 33337430 33337551 -209326802 + MIR SINE MIR 13 116 -146 2297 95 0 3 chr1 33337551 33337856 -209326497 - AluSx SINE Alu -6 306 3 451 295 26 81 chr1 33337856 33337968 -209326385 + MIR SINE MIR 116 233 -29 852 308 83 10 chr1 33338060 33338522 -209325831 - L2 LINE L2 -189 3083 2585 207 283 113 0 chr1 33338644 33338750 -209325603 - L2 LINE L2 -1005 2309 2192 184 238 48 95 chr1 33339351 33339414 -209324939 + L2 LINE L2 3253 3312 -1 * 517 239 151 7 chr1 33339403 33339625 -209324728 + MIR SINE MIR 7 256 -6 299 337 128 47 chr1 33339920 33340326 -209324027 + L2 LINE L2 2355 2793 -521 427 259 63 51 chr1 33340328 33340486 -209323867 - L2 LINE L2 -1 3271 3112 320 360 39 70 chr1 33340588 33340971 -209323382 + L2 LINE L2 2897 3267 -5 249 259 0 0 chr1 33340969 33341027 -209323326 + MIR SINE MIR 97 154 -108 * 247 309 183 0 chr1 33341443 33341569 -209322784 + MIR3 SINE MIR 17 165 -43 224 313 50 0 chr1 33341595 33341675 -209322678 + L2 LINE L2 2973 3056 -216 205 316 0 0 chr1 33341888 33341945 -209322408 - MIR SINE MIR 0 262 206 1323 150 18 9 chr1 33342135 33342361 -209321992 - AluJo SINE Alu -1 311 84 254 331 115 7 chr1 33342396 33342544 -209321809 - MIR SINE MIR -51 211 48 241 250 16 16 chr1 33343002 33343066 -209321287 + MIR SINE MIR 30 93 -115 628 255 87 5 chr1 33343099 33343295 -209321058 - MIR SINE MIR -1 261 50 1503 151 0 130 chr1 33343304 33343653 -209320700 - AluJb SINE Alu 0 308 2 315 286 163 0 chr1 33343927 33344025 -209320328 - L2 LINE L2 0 3272 3159 360 279 31 37 chr1 33344033 33344194 -209320159 + MIR SINE MIR 26 184 -63 453 285 26 70 chr1 33344787 33345015 -209319338 - MLT1I LTR MaLR -81 328 111 483 296 70 30 chr1 33345316 33345515 -209318838 - MIR SINE MIR -36 226 20 2025 107 3 16 chr1 33345819 33346129 -209318224 - AluSq SINE Alu -1 312 7 392 257 30 0 chr1 33346506 33346607 -209317746 - MIR SINE MIR -127 135 32 845 277 115 50 chr1 33347944 33348112 -209316241 + L2 LINE L2 2175 2331 -983 1852 158 135 20 chr1 33348112 33348467 -209315886 + MSTD LTR MaLR 1 396 0 845 277 115 50 chr1 33348467 33348879 -209315474 + L2 LINE L2 2331 2793 -521 203 287 163 31 chr1 33349416 33349545 -209314808 - MIR SINE MIR -32 230 85 1115 193 69 26 chr1 33349565 33349870 -209314483 + MER33 DNA MER1_type 1 318 -6 264 296 9 78 chr1 33350105 33350220 -209314133 - MIR SINE MIR -50 212 106 252 375 45 0 chr1 33350357 33350533 -209313820 - L2 LINE L2 -173 3099 2916 335 206 78 71 chr1 33350736 33350877 -209313476 - MIR3 SINE MIR -9 199 58 379 241 75 8 chr1 33351677 33351806 -209312547 + MIR SINE MIR 58 202 -58 436 250 80 34 chr1 33352523 33352699 -209311654 + MIR SINE MIR 46 229 -33 507 290 28 7 chr1 33352714 33352859 -209311494 - MIR SINE MIR -4 258 111 385 272 46 33 chr1 33353693 33353866 -209310487 - MIR SINE MIR -24 184 8 396 0 0 0 chr1 33354883 33354927 -209309426 + (CA)n Simple_repeat Simple_repeat 2 45 0 373 254 45 9 chr1 33355287 33355397 -209308956 - MIR3 SINE MIR -7 201 88 238 299 142 16 chr1 33356380 33356507 -209307846 - MIR SINE MIR -6 256 114 373 265 73 73 chr1 33357881 33358085 -209306268 - MIR SINE MIR -28 234 31 248 250 125 18 chr1 33358389 33358501 -209305852 - MIR SINE MIR -55 153 30 254 186 70 47 chr1 33359534 33359620 -209304733 - MER5A DNA MER1_type -22 167 80 424 330 116 9 chr1 33360263 33360487 -209303866 - MIR SINE MIR 0 262 15 331 335 92 37 chr1 33360505 33360723 -209303630 + L3 LINE CR1 1345 1574 -3 300 324 122 0 chr1 33362208 33362347 -209302006 - MIR3 SINE MIR -24 184 29 186 171 0 0 chr1 33364033 33364074 -209300279 + (CA)n Simple_repeat Simple_repeat 2 42 0 201 331 56 0 chr1 33365733 33365875 -209298478 + (CAGAGA)n Simple_repeat Simple_repeat 5 154 0 279 0 0 0 chr1 33366974 33367005 -209297348 + (CA)n Simple_repeat Simple_repeat 1 31 0 301 324 233 28 chr1 33367086 33367373 -209296980 - L2 LINE L2 -13 3259 2914 206 135 27 0 chr1 33369407 33369444 -209294909 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 206 342 0 13 chr1 33370953 33371032 -209293321 - MIR3 SINE MIR -49 159 82 385 295 93 0 chr1 33371118 33371247 -209293106 - MIR SINE MIR -43 219 79 384 381 35 17 chr1 33372112 33372343 -209292010 + MIR SINE MIR 28 262 0 548 309 209 18 chr1 33372810 33373552 -209290801 + L2 LINE L2 1522 2405 -909 284 296 30 44 chr1 33373528 33373663 -209290690 + L2 LINE L2 2951 3083 -189 * 200 276 228 8 chr1 33373875 33374002 -209290351 - L3 LINE CR1 -815 762 608 263 338 62 62 chr1 33374152 33374312 -209290041 - L3 LINE CR1 -1221 356 197 537 226 250 10 chr1 33374880 33375088 -209289265 - MIR SINE MIR -3 259 2 663 281 95 5 chr1 33375488 33375698 -209288655 + MIR SINE MIR 20 248 -14 1786 166 6 16 chr1 33375709 33376080 -209288273 + AluJo SINE Alu 1 368 0 256 331 104 0 chr1 33376087 33376241 -209288112 + L2 LINE L2 2886 3055 -217 204 266 64 32 chr1 33377038 33377132 -209287221 + L2 LINE L2 3142 3238 -34 244 311 48 10 chr1 33377213 33377316 -209287037 + L2 LINE L2 2873 2979 -334 439 197 8 57 chr1 33377427 33377549 -209286804 - MER94 DNA DNA -18 116 1 * 615 256 172 0 chr1 33377549 33377807 -209286546 - MER113 DNA MER1_type? -131 390 88 200 244 0 22 chr1 33377965 33378010 -209286343 - L2 LINE L2 -8 3305 3262 * 616 319 97 0 chr1 33377978 33378194 -209286159 - MIR SINE MIR -14 248 12 210 322 55 62 chr1 33378537 33378683 -209285670 - L2 LINE L2 -136 3136 2992 277 265 71 0 chr1 33378861 33378959 -209285394 - MIR SINE MIR -71 137 33 237 278 167 19 chr1 33381095 33381203 -209283150 - MIR3 SINE MIR -51 157 34 558 346 132 11 chr1 33381626 33381981 -209282372 + L2 LINE L2 2855 3252 -20 660 292 31 16 chr1 33383007 33383199 -209281154 + MIR SINE MIR 68 262 0 276 260 171 10 chr1 33383617 33383720 -209280633 + MIR SINE MIR 37 153 -63 213 313 125 19 chr1 33384253 33384413 -209279940 - MIR3 SINE MIR -22 186 10 24 67 0 0 chr1 33387088 33387133 -209277220 + GC_rich Low_complexity Low_complexity 1 45 0 516 259 212 0 chr1 33387927 33388120 -209276233 - MIR SINE MIR -16 246 13 237 318 0 0 chr1 33388246 33388312 -209276041 + GA-rich Low_complexity Low_complexity 2 67 0 189 74 0 0 chr1 33388681 33388708 -209275645 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 22 35 0 0 chr1 33388965 33388994 -209275359 + GC_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr1 33389985 33390022 -209274331 + GC_rich Low_complexity Low_complexity 1 37 0 114 51 0 0 chr1 33390199 33390376 -209273977 + GC_rich Low_complexity Low_complexity 1 177 0 186 71 0 0 chr1 33390376 33390404 -209273949 + (G)n Simple_repeat Simple_repeat 1 28 0 206 194 14 56 chr1 33390660 33390732 -209273621 + G-rich Low_complexity Low_complexity 6 74 0 341 207 98 4 chr1 33393346 33393438 -209270915 + MIR3 SINE MIR 67 166 -42 292 80 40 0 chr1 33394388 33394438 -209269915 - L2 LINE L2 0 3313 3262 827 303 132 20 chr1 33394440 33395164 -209269189 + L2 LINE L2 2493 3313 0 556 313 51 10 chr1 33395274 33395469 -209268884 + MIR SINE MIR 20 222 -40 353 307 39 8 chr1 33396487 33396614 -209267739 - MIR SINE MIR -29 233 103 224 250 24 12 chr1 33397415 33397499 -209266854 + (TG)n Simple_repeat Simple_repeat 2 86 0 315 0 0 0 chr1 33397652 33397687 -209266666 + (TG)n Simple_repeat Simple_repeat 1 35 0 28 61 0 0 chr1 33398329 33398378 -209265975 + GC_rich Low_complexity Low_complexity 1 49 0 207 246 31 0 chr1 33398440 33398505 -209265848 + (TG)n Simple_repeat Simple_repeat 2 68 0 204 40 0 0 chr1 33399634 33399659 -209264694 + (CA)n Simple_repeat Simple_repeat 1 25 0 180 331 107 33 chr1 33400096 33400217 -209264136 + L2 LINE L2 3142 3271 -1 865 264 46 84 chr1 33400570 33400986 -209263367 - L2 LINE L2 0 3313 2914 1641 135 8 0 chr1 33401122 33401359 -209262994 + AluJo SINE Alu 1 239 -73 784 205 35 20 chr1 33401666 33401866 -209262487 + MER63A DNA MER1_type 1 203 -7 1885 129 3 20 chr1 33402115 33402417 -209261936 + AluJb SINE Alu 1 297 -15 348 225 129 55 chr1 33402514 33402692 -209261661 + MIR3 SINE MIR 21 208 0 232 324 73 79 chr1 33403739 33404079 -209260274 + L2 LINE L2 2844 3181 -91 2271 109 3 0 chr1 33404079 33404415 -209259938 + AluSq SINE Alu 1 337 0 262 279 0 0 chr1 33404791 33404852 -209259501 + L3b LINE CR1 1337 1397 -186 2442 65 0 0 chr1 33405686 33405994 -209258359 - AluY SINE Alu -3 308 1 311 240 30 49 chr1 33405999 33406102 -209258251 - MIR SINE MIR -63 145 45 1586 269 78 9 chr1 33406284 33406370 -209257983 + L1ME4a LINE L1 5385 5464 -657 216 0 0 0 chr1 33406370 33406394 -209257959 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1586 269 78 9 chr1 33406394 33406964 -209257389 + L1ME4a LINE L1 5464 6086 -35 297 0 0 0 chr1 33407004 33407037 -209257316 + (TG)n Simple_repeat Simple_repeat 1 33 0 521 314 59 13 chr1 33407073 33407309 -209257044 - L2 LINE L2 -196 3076 2830 516 332 66 63 chr1 33407321 33407837 -209256516 - HAL1 LINE L1 -1167 1340 875 274 301 31 56 chr1 33407973 33408169 -209256184 + L2 LINE L2 2787 2978 -294 788 185 22 6 chr1 33410240 33410418 -209253935 + L1MA7 LINE L1 6111 6291 0 567 289 78 4 chr1 33410645 33411024 -209253329 + MER115 DNA AcHobo 9 455 -238 893 140 135 11 chr1 33411067 33411245 -209253108 + MIR SINE MIR 63 262 0 204 237 151 65 chr1 33413979 33414118 -209250235 - L3 LINE CR1 -69 1508 1358 200 329 95 15 chr1 33414540 33414677 -209249676 - L3b LINE CR1 -136 1447 1300 445 254 53 35 chr1 33414704 33414873 -209249480 - MIR SINE MIR -17 245 74 238 217 72 0 chr1 33415777 33415846 -209248507 - MIR SINE MIR -110 152 79 235 293 24 36 chr1 33416084 33416251 -209248102 + C-rich Low_complexity Low_complexity 3 167 0 655 263 24 96 chr1 33418682 33418933 -209245420 + MIR SINE MIR 2 234 -28 260 271 185 8 chr1 33419374 33419500 -209244853 - MIR SINE MIR -62 146 21 187 284 15 15 chr1 33420025 33420092 -209244261 + L2 LINE L2 3206 3272 0 288 178 41 41 chr1 33420475 33420548 -209243805 - MIR SINE MIR -109 153 81 530 281 112 65 chr1 33421268 33421392 -209242961 - L1ME4a LINE L1 -38 6083 5966 2205 97 19 16 chr1 33421392 33421700 -209242653 - AluSc SINE Alu 0 309 1 530 281 112 65 chr1 33421700 33422067 -209242286 - L1ME4a LINE L1 -155 5966 5569 522 231 231 5 chr1 33422174 33422360 -209241993 + MIR SINE MIR 21 248 -14 216 0 0 0 chr1 33422388 33422412 -209241941 + (TCCCC)n Simple_repeat Simple_repeat 2 25 0 454 214 71 0 chr1 33422588 33422686 -209241667 + L2 LINE L2 3209 3313 0 259 236 93 99 chr1 33423321 33423482 -209240871 - MIR SINE MIR -91 171 12 283 305 214 0 chr1 33423963 33424094 -209240259 + MIR SINE MIR 83 241 -21 1051 201 11 0 chr1 33424206 33424380 -209239973 + MER45A DNA AcHobo 3 178 0 290 280 10 10 chr1 33424936 33425075 -209239278 + CT-rich Low_complexity Low_complexity 1 139 0 466 340 42 5 chr1 33425597 33425788 -209238565 - MIR SINE MIR -43 219 22 357 271 83 14 chr1 33425867 33426011 -209238342 + MIR3 SINE MIR 43 196 -12 246 302 93 12 chr1 33426072 33426158 -209238195 + MIR3 SINE MIR 8 100 -108 256 294 124 7 chr1 33427146 33427311 -209237042 + MIR SINE MIR 17 191 -68 525 252 43 0 chr1 33427595 33427710 -209236643 + L2 LINE L2 3141 3260 -12 2422 79 0 0 chr1 33428773 33429063 -209235290 + AluSx SINE Alu 1 290 -22 723 260 87 29 chr1 33429147 33429389 -209234964 - MIR SINE MIR -1 261 6 234 304 43 9 chr1 33429514 33429629 -209234724 + L1ME4a LINE L1 5998 6116 -5 421 247 27 97 chr1 33430010 33430310 -209234043 + L1ME LINE L1 753 1031 -5088 1838 151 0 27 chr1 33430354 33430646 -209233707 + AluJo SINE Alu 17 300 -12 379 171 0 23 chr1 33430646 33430734 -209233619 + GA-rich Low_complexity Low_complexity 1 86 0 554 199 49 57 chr1 33430739 33430970 -209233383 + L1ME LINE L1 1046 1279 -4850 1168 207 15 49 chr1 33431011 33431277 -209233076 - MIR SINE MIR 0 262 6 671 328 90 76 chr1 33431305 33431857 -209232496 + L1ME LINE L1 1400 1966 -4344 2244 109 3 10 chr1 33431857 33432170 -209232183 - AluY SINE Alu 0 311 1 671 328 90 76 chr1 33432170 33432331 -209232022 + L1ME LINE L1 1966 2123 -4187 1767 168 16 16 chr1 33432331 33432634 -209231719 + AluJo SINE Alu 1 303 -9 916 266 62 35 chr1 33432642 33433292 -209231061 + L1ME LINE L1 2096 2770 -3359 1331 153 110 33 chr1 33433292 33433435 -209230918 - MER33 DNA MER1_type -2261 324 193 2129 102 0 33 chr1 33433435 33433740 -209230613 - AluSg SINE Alu -15 295 1 1331 153 110 33 chr1 33433740 33433897 -209230456 - MER33 DNA MER1_type -2392 193 1 916 266 62 35 chr1 33433897 33433990 -209230363 + L1ME LINE L1 2770 2859 -3270 2020 113 35 7 chr1 33433993 33434276 -209230077 + AluSx SINE Alu 1 291 -21 671 168 0 0 chr1 33434276 33434395 -209229958 + MER49 LTR ERV1 188 306 -617 1476 265 101 72 chr1 33435083 33436507 -209227846 + L1ME LINE L1 2857 4321 -1808 983 248 75 42 chr1 33436526 33436551 -209227802 + L1ME LINE L1 5299 5322 -823 1969 92 28 0 chr1 33436551 33436800 -209227553 + AluSq SINE Alu 1 256 -57 983 248 75 42 chr1 33436800 33437250 -209227103 + L1ME LINE L1 5322 5786 -359 795 215 34 17 chr1 33437259 33437436 -209226917 + MIR SINE MIR 71 250 -12 180 77 0 0 chr1 33437703 33437729 -209226624 + (TCCCC)n Simple_repeat Simple_repeat 4 29 0 617 250 20 60 chr1 33437880 33437992 -209226361 + MIR SINE MIR 48 150 -112 1974 154 20 0 chr1 33437992 33438285 -209226068 - AluJb SINE Alu -13 299 1 617 250 20 60 chr1 33438285 33438372 -209225981 + MIR SINE MIR 150 239 -23 204 267 0 0 chr1 33438751 33438796 -209225557 - MIR SINE MIR -110 152 108 2027 128 47 3 chr1 33438827 33439124 -209225229 + AluSx SINE Alu 1 310 -2 181 259 82 35 chr1 33439183 33439268 -209225085 - MIR SINE MIR -100 108 20 679 333 44 4 chr1 33439700 33439949 -209224404 - MIR SINE MIR -2 260 2 515 284 77 24 chr1 33440198 33440367 -209223986 + MIR SINE MIR 61 238 -24 210 257 27 68 chr1 33440421 33440495 -209223858 + MIR SINE MIR 21 91 -171 401 215 66 50 chr1 33440722 33440843 -209223510 + MIR SINE MIR 69 191 -71 671 189 85 57 chr1 33440869 33440902 -209223451 - MIR SINE MIR -13 249 218 2300 94 17 0 chr1 33440902 33441200 -209223153 - AluSc SINE Alu -6 303 1 671 189 85 57 chr1 33441200 33441378 -209222975 - MIR SINE MIR -44 218 32 266 244 200 0 chr1 33443339 33443429 -209220924 - MIR SINE MIR -71 137 30 180 0 0 0 chr1 33443948 33443968 -209220385 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3190 94 2 2 chr1 33443970 33444417 -209219936 - L1PA13 LINE L1 -11 6152 5706 252 222 0 89 chr1 33444604 33444694 -209219659 - HAL1 LINE L1 -163 2344 2263 198 0 0 0 chr1 33444737 33444759 -209219594 + (TA)n Simple_repeat Simple_repeat 2 23 0 2207 115 0 0 chr1 33444759 33445054 -209219299 - AluSg SINE Alu -15 295 1 27 0 0 0 chr1 33445057 33445084 -209219269 + AT_rich Low_complexity Low_complexity 1 27 0 290 192 0 41 chr1 33445230 33445303 -209219050 - HAL1b LINE L1 -547 801 732 1863 154 37 10 chr1 33445396 33445695 -209218658 - AluJo SINE Alu -5 307 1 314 293 24 0 chr1 33445787 33445869 -209218484 + L1ME3A LINE L1 5792 5875 -295 545 186 9 9 chr1 33445886 33445999 -209218354 + L1MC3 LINE L1 7673 7785 0 647 201 132 75 chr1 33446303 33446556 -209217797 - MIR SINE MIR 0 262 16 2319 116 7 0 chr1 33446569 33446879 -209217474 - AluSx SINE Alu 0 312 1 2187 111 44 3 chr1 33447052 33447349 -209217004 - AluSq SINE Alu -4 309 1 393 293 139 22 chr1 33447349 33447666 -209216687 - L1M4 LINE L1 -1316 4830 4477 2087 141 11 28 chr1 33447811 33448172 -209216181 + L1MB5 LINE L1 5812 6166 -8 314 359 72 18 chr1 33448178 33448345 -209216008 - L1ME LINE L1 -460 5661 5486 2273 94 7 7 chr1 33448366 33448673 -209215680 + AluSx SINE Alu 4 310 -2 229 153 56 42 chr1 33448834 33448906 -209215447 - MER20B DNA MER1_type -34 749 677 694 261 78 23 chr1 33448914 33449132 -209215221 + MIR SINE MIR 5 234 -28 723 220 101 10 chr1 33449134 33449343 -209215010 - MER20B DNA MER1_type -143 640 413 2123 104 0 0 chr1 33449343 33449612 -209214741 - AluSx SINE Alu -43 269 1 512 254 69 0 chr1 33449647 33449777 -209214576 - MER20B DNA MER1_type -549 234 96 1685 159 0 39 chr1 33449928 33450211 -209214142 - AluJo SINE Alu -40 272 1 705 240 162 44 chr1 33450379 33450544 -209213809 + L2 LINE L2 2555 2699 -614 2451 68 3 0 chr1 33450544 33450836 -209213517 + AluSp SINE Alu 1 293 -20 705 240 162 44 chr1 33450836 33451207 -209213146 + L2 LINE L2 2699 3146 -167 2015 144 3 16 chr1 33451375 33451688 -209212665 + AluJb SINE Alu 1 309 -3 443 219 21 0 chr1 33451690 33451786 -209212567 - L1ME2 LINE L1 -43 6121 6024 857 190 6 0 chr1 33451843 33452001 -209212352 - L1MA10 LINE L1 -7 6327 6169 2456 86 3 0 chr1 33452094 33452398 -209211955 - AluSx SINE Alu -7 305 1 2442 95 3 0 chr1 33452409 33452715 -209211638 - AluSp SINE Alu -6 307 1 445 265 52 88 chr1 33453844 33454093 -209210260 - MIR SINE MIR 0 262 23 2306 81 10 0 chr1 33454296 33454591 -209209762 - AluY SINE Alu -13 298 1 2160 73 91 0 chr1 33454592 33454866 -209209487 - AluSc SINE Alu -10 299 1 325 195 37 49 chr1 33454946 33455028 -209209325 - MIR SINE MIR -98 164 84 652 252 42 30 chr1 33455804 33456066 -209208287 - L1ME LINE L1 -298 5823 5559 2501 78 0 3 chr1 33456187 33456496 -209207857 - AluSg SINE Alu -2 308 1 24 0 0 0 chr1 33456547 33456571 -209207782 + AT_rich Low_complexity Low_complexity 1 24 0 1606 215 44 0 chr1 33456733 33457031 -209207322 + AluJb SINE Alu 1 311 -1 1088 174 12 0 chr1 33457037 33457204 -209207149 + AluJb SINE Alu 133 301 -11 1703 168 25 4 chr1 33458195 33458469 -209205884 + AluJb SINE Alu 1 280 -32 1898 68 0 8 chr1 33458898 33459161 -209205192 + L1P5 LINE L1 5410 5670 -481 201 74 0 0 chr1 33459162 33459189 -209205164 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1666 139 3 58 chr1 33461964 33462274 -209202079 + AluJb SINE Alu 1 293 -19 2281 69 7 3 chr1 33462874 33463165 -209201188 - AluSc SINE Alu -17 292 1 208 135 0 0 chr1 33464306 33464343 -209200010 + (A)n Simple_repeat Simple_repeat 1 37 0 766 0 21 0 chr1 33464351 33464445 -209199908 + (TA)n Simple_repeat Simple_repeat 2 97 0 1854 139 0 0 chr1 33464640 33464914 -209199439 + AluJb SINE Alu 1 274 -38 604 104 8 52 chr1 33464914 33465048 -209199305 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 513 311 141 18 chr1 33465124 33465564 -209198789 - L2 LINE L2 -842 2472 1979 793 98 8 32 chr1 33465570 33465693 -209198660 + FLAM_C SINE Alu 6 125 -18 2077 126 0 0 chr1 33465706 33466000 -209198353 + AluSq SINE Alu 3 296 -17 2073 113 3 0 chr1 33466026 33466319 -209198034 + AluSx SINE Alu 1 294 -18 2143 119 0 3 chr1 33466321 33466632 -209197721 + AluSq SINE Alu 1 310 -3 2155 92 3 0 chr1 33467285 33467596 -209196757 - AluSp SINE Alu 0 312 1 471 260 215 23 chr1 33467616 33467835 -209196518 - MIR SINE MIR 0 262 2 560 163 0 0 chr1 33468722 33468814 -209195539 + AluJ/FLAM SINE Alu 2 93 -219 180 77 0 0 chr1 33468837 33468863 -209195490 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1663 102 0 4 chr1 33468924 33469149 -209195204 + AluSx SINE Alu 1 224 -88 1966 114 0 38 chr1 33469152 33469467 -209194886 + AluSq SINE Alu 1 303 -10 2023 111 0 0 chr1 33469476 33469755 -209194598 + AluSx SINE Alu 1 279 -33 270 0 0 0 chr1 33469755 33469785 -209194568 + (CA)n Simple_repeat Simple_repeat 1 30 0 428 241 132 61 chr1 33469800 33470012 -209194341 - MIR SINE MIR -26 236 10 226 318 64 9 chr1 33470009 33470119 -209194234 - MIR SINE MIR -61 201 86 * 1691 112 0 35 chr1 33470593 33470852 -209193501 - AluSx SINE Alu -53 259 10 206 288 0 17 chr1 33471796 33471855 -209192498 - L3 LINE CR1 -3 1574 1517 2369 54 0 3 chr1 33472082 33472380 -209191973 + AluY SINE Alu 1 297 -14 236 275 38 25 chr1 33472487 33472567 -209191786 - L3 LINE CR1 -74 1503 1423 2188 88 3 38 chr1 33472604 33472923 -209191430 - AluSc SINE Alu -1 308 1 311 0 0 25 chr1 33473029 33473069 -209191284 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 742 234 7 0 chr1 33473071 33473216 -209191137 - FRAM SINE Alu -30 146 1 328 214 194 0 chr1 33473282 33473385 -209190968 + L2 LINE L2 3191 3313 0 571 226 97 77 chr1 33473578 33473741 -209190612 + L1ME4a LINE L1 5634 5792 -329 2148 94 0 10 chr1 33473741 33474040 -209190313 + AluSg SINE Alu 1 296 -14 571 226 97 77 chr1 33474040 33474247 -209190106 + L1ME4a LINE L1 5792 6008 -113 2038 89 11 7 chr1 33474251 33474557 -209189796 + AluSp SINE Alu 1 307 0 245 169 0 0 chr1 33474651 33474698 -209189655 - L1MB7 LINE L1 0 6178 6132 1841 131 28 3 chr1 33474731 33475021 -209189332 - AluSx SINE Alu -15 297 1 2173 110 3 0 chr1 33475063 33475371 -209188982 - AluSg1 SINE Alu 0 309 1 1432 194 3 10 chr1 33475393 33475687 -209188666 + AluJb SINE Alu 7 298 -14 250 297 168 20 chr1 33475824 33475925 -209188428 - L2 LINE L2 -12 3260 3145 357 304 158 16 chr1 33476228 33476412 -209187941 - MIR SINE MIR -30 232 23 335 288 63 36 chr1 33476558 33476780 -209187573 - L2 LINE L2 -181 3091 2864 219 36 0 0 chr1 33477289 33477317 -209187036 + (GA)n Simple_repeat Simple_repeat 1 28 0 321 326 36 22 chr1 33477627 33477765 -209186588 - MIR SINE MIR -95 167 28 2173 95 0 3 chr1 33477834 33478129 -209186224 + AluSc SINE Alu 1 294 -15 1679 106 0 0 chr1 33478183 33478410 -209185943 + AluSq SINE Alu 1 227 -86 1310 158 51 22 chr1 33478410 33478683 -209185670 + L1M4 LINE L1 4169 4449 -1697 1045 180 4 44 chr1 33478687 33478830 -209185523 + AluJb SINE Alu 6 138 -174 2146 97 14 0 chr1 33478830 33479120 -209185233 + AluY SINE Alu 1 294 -17 1045 180 4 44 chr1 33479120 33479204 -209185149 + AluJb SINE Alu 138 224 -88 517 68 27 0 chr1 33479305 33479378 -209184975 - AluS SINE Alu -237 76 2 188 324 110 29 chr1 33479546 33479638 -209184715 + MIR SINE MIR 108 216 -46 1752 121 69 0 chr1 33479638 33479928 -209184425 + AluSx SINE Alu 1 310 -2 188 324 110 29 chr1 33479928 33479971 -209184382 + MIR SINE MIR 216 254 -8 244 224 102 31 chr1 33480549 33480647 -209183706 - MIR SINE MIR -69 193 89 667 254 37 26 chr1 33480982 33481171 -209183182 + MLT1L LTR MaLR 103 293 -322 279 208 0 0 chr1 33481275 33481328 -209183025 - MIR SINE MIR 0 262 210 5037 166 187 123 chr1 33481331 33481500 -209182853 - Tigger1 DNA MER2_type -1 2417 2260 207 0 0 0 chr1 33481500 33481523 -209182830 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5037 166 187 123 chr1 33481523 33481540 -209182813 - Tigger1 DNA MER2_type -158 2260 2246 1972 97 0 15 chr1 33481540 33481809 -209182544 - AluSg SINE Alu -45 265 1 5037 166 187 123 chr1 33481809 33482124 -209182229 - Tigger1 DNA MER2_type -172 2246 1953 1718 156 10 10 chr1 33482124 33482412 -209181941 + AluJo SINE Alu 2 289 -23 5037 166 187 123 chr1 33482412 33482438 -209181915 - Tigger1 DNA MER2_type -465 1953 1930 246 62 0 0 chr1 33482438 33482470 -209181883 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1643 148 53 7 chr1 33482470 33482753 -209181600 - AluJb SINE Alu -16 296 1 5037 166 187 123 chr1 33482753 33483173 -209181180 - Tigger1 DNA MER2_type -488 1930 1538 2041 113 3 3 chr1 33483173 33483466 -209180887 + AluSq SINE Alu 1 293 -20 198 0 0 0 chr1 33483466 33483488 -209180865 + (TA)n Simple_repeat Simple_repeat 2 23 0 5037 166 187 123 chr1 33483488 33483867 -209180486 - Tigger1 DNA MER2_type -880 1538 1185 1913 132 3 0 chr1 33483867 33484154 -209180199 - AluSx SINE Alu -24 288 1 2230 69 0 14 chr1 33484158 33484449 -209179904 - AluY SINE Alu -20 291 5 1317 209 21 3 chr1 33484452 33484739 -209179614 - AluJo SINE Alu -20 292 1 5037 166 187 123 chr1 33484739 33484769 -209179584 - Tigger1 DNA MER2_type -1236 1182 1155 2071 111 7 0 chr1 33484769 33485058 -209179295 - AluSx SINE Alu -21 291 1 5037 166 187 123 chr1 33485058 33485188 -209179165 - Tigger1 DNA MER2_type -1263 1155 1035 816 71 143 0 chr1 33485188 33485314 -209179039 - AluY SINE Alu 0 311 168 5037 166 187 123 chr1 33485314 33485391 -209178962 - Tigger1 DNA MER2_type -1383 1035 964 1935 119 42 0 chr1 33485391 33485677 -209178676 + AluSp SINE Alu 1 298 -15 5037 166 187 123 chr1 33485677 33486179 -209178174 - Tigger1 DNA MER2_type -1454 964 66 2315 81 0 3 chr1 33486179 33486486 -209177867 - AluSg SINE Alu -4 306 1 21 0 0 0 chr1 33486493 33486514 -209177839 + AT_rich Low_complexity Low_complexity 1 21 0 795 171 0 0 chr1 33486522 33486651 -209177702 + FLAM_C SINE Alu 1 129 -4 278 297 22 16 chr1 33486710 33486821 -209177532 - MIR SINE MIR -36 172 62 2175 101 3 3 chr1 33486931 33487238 -209177115 - AluSq SINE Alu -6 307 1 546 216 8 64 chr1 33487359 33487484 -209176869 - L2 LINE L2 -9 3304 3187 442 243 124 104 chr1 33487492 33487651 -209176702 - Charlie8 DNA MER1_type -53 288 121 2119 100 24 0 chr1 33487651 33487942 -209176411 - AluSg SINE Alu -12 298 1 442 243 124 104 chr1 33487942 33488041 -209176312 - Charlie8 DNA MER1_type -220 121 25 35 45 0 15 chr1 33488117 33488154 -209176199 + AT_rich Low_complexity Low_complexity 1 38 -28 1917 126 0 13 chr1 33488154 33488455 -209175898 - AluSx SINE Alu -15 297 1 35 45 0 15 chr1 33488455 33488484 -209175869 + AT_rich Low_complexity Low_complexity 38 66 0 1821 96 0 19 chr1 33488484 33488754 -209175599 - AluSx SINE Alu -23 289 25 1873 126 23 26 chr1 33488778 33489080 -209175273 - AluSx SINE Alu -11 301 1 417 313 116 43 chr1 33489100 33489599 -209174754 - L2 LINE L2 -692 2622 2161 2097 110 0 0 chr1 33489599 33489891 -209174462 + AluSx SINE Alu 1 292 -20 2259 92 0 13 chr1 33489900 33490216 -209174137 + AluSq SINE Alu 1 312 -1 417 313 116 43 chr1 33490216 33490291 -209174062 - L2 LINE L2 -1160 2154 1945 1869 112 11 0 chr1 33490457 33490735 -209173618 - AluSq SINE Alu -20 293 13 1070 80 0 0 chr1 33490746 33490883 -209173470 - AluSq/x SINE Alu -176 137 1 259 301 113 74 chr1 33490890 33491146 -209173207 + L2 LINE L2 2997 3262 -10 211 285 74 116 chr1 33491371 33491613 -209172740 + L2 LINE L2 2814 3045 -227 1861 94 9 94 chr1 33491819 33492148 -209172205 - AluSp SINE Alu -12 301 1 1988 129 3 0 chr1 33492151 33492445 -209171908 - AluSx SINE Alu -17 295 1 646 283 53 11 chr1 33492452 33492639 -209171714 + MIR SINE MIR 51 245 -17 25 0 0 0 chr1 33493568 33493593 -209170760 + AT_rich Low_complexity Low_complexity 1 25 0 462 301 6 32 chr1 33493931 33494087 -209170266 + MIR3 SINE MIR 16 167 -41 265 303 62 41 chr1 33494377 33494522 -209169831 + MIR SINE MIR 89 236 -26 2132 102 0 16 chr1 33494634 33494938 -209169415 - AluSx SINE Alu -13 299 1 312 225 111 13 chr1 33495297 33495411 -209168942 + MIR SINE MIR 16 153 -62 378 285 126 80 chr1 33495489 33495624 -209168729 + L2 LINE L2 2624 2751 -521 2087 119 0 0 chr1 33495624 33495917 -209168436 - AluSq SINE Alu -20 293 1 378 285 126 80 chr1 33495917 33496202 -209168151 + L2 LINE L2 2751 3022 -250 1697 86 13 0 chr1 33496202 33496436 -209167917 - L1PA5 LINE L1 0 6154 5918 1797 90 76 11 chr1 33496436 33496713 -209167640 - AluSx SINE Alu -17 295 1 378 285 126 80 chr1 33496713 33496910 -209167443 + L2 LINE L2 3021 3267 -5 2183 72 0 30 chr1 33496928 33497233 -209167120 - AluY SINE Alu -15 296 1 2140 95 0 16 chr1 33497381 33497687 -209166666 + AluSq SINE Alu 1 301 -12 926 224 44 57 chr1 33497702 33497751 -209166602 + L1ME2 LINE L1 5842 5890 -274 2179 85 41 0 chr1 33497751 33498045 -209166308 + AluY SINE Alu 1 306 -5 2141 102 0 13 chr1 33498050 33498355 -209165998 + AluSg SINE Alu 1 301 -9 926 224 44 57 chr1 33498355 33498578 -209165775 + L1ME2 LINE L1 5894 6118 -46 1849 153 3 3 chr1 33498578 33498872 -209165481 + AluJb SINE Alu 1 294 -18 926 224 44 57 chr1 33498872 33498909 -209165444 + L1ME2 LINE L1 6118 6154 -10 1577 133 0 12 chr1 33498922 33499163 -209165190 + AluSx SINE Alu 1 238 -74 1980 135 0 6 chr1 33499303 33499614 -209164739 - AluSx SINE Alu -3 309 1 1634 150 0 70 chr1 33499616 33499929 -209164424 - AluJb SINE Alu -15 297 7 789 232 87 93 chr1 33500208 33500518 -209163835 - MER102a DNA MER1_type -14 316 9 855 245 43 51 chr1 33500726 33500979 -209163374 + MIR SINE MIR 12 262 0 1595 147 8 4 chr1 33501069 33501320 -209163033 - AluJo SINE Alu -24 288 37 365 264 35 49 chr1 33501467 33501611 -209162742 + L2 LINE L2 3171 3312 -1 908 268 96 30 chr1 33501756 33502058 -209162295 + MLT1K LTR MaLR 117 438 -150 1258 106 0 11 chr1 33502060 33502273 -209162080 - AluSg/x SINE Alu 0 317 107 303 294 113 57 chr1 33502591 33502768 -209161585 + MIR SINE MIR 47 233 -29 1982 128 7 0 chr1 33502920 33503210 -209161143 - AluSx SINE Alu -20 292 1 453 289 75 11 chr1 33503268 33503455 -209160898 + L1MC4a LINE L1 5628 5809 -312 382 145 0 40 chr1 33503793 33503869 -209160484 + LTR30 LTR ERV1 552 624 -98 258 263 22 66 chr1 33503916 33503980 -209160373 + L1ME4a LINE L1 5991 6047 -74 2064 101 7 3 chr1 33503980 33504276 -209160077 - AluSc SINE Alu -12 297 1 258 263 22 66 chr1 33504276 33504348 -209160005 + L1ME4a LINE L1 6047 6121 0 2083 99 26 3 chr1 33504448 33504751 -209159602 - AluSp SINE Alu -2 311 2 1588 163 0 21 chr1 33505395 33505512 -209158841 + AluSq SINE Alu 20 138 -175 2194 93 0 31 chr1 33505512 33505834 -209158519 + AluSx SINE Alu 1 312 0 1588 163 0 21 chr1 33505834 33505999 -209158354 + AluSq SINE Alu 138 296 -17 244 182 23 0 chr1 33506029 33506073 -209158280 + MIR3 SINE MIR 134 178 -30 977 105 0 0 chr1 33506151 33506284 -209158069 - AluSq/x SINE Alu -180 133 1 770 189 13 189 chr1 33506884 33507143 -209157210 + MIR SINE MIR 10 210 -52 2438 62 3 0 chr1 33507143 33507449 -209156904 + AluSp SINE Alu 1 307 -6 770 189 13 189 chr1 33507449 33507491 -209156862 + MIR SINE MIR 210 258 -4 1636 125 61 51 chr1 33507688 33507904 -209156449 - MER2 DNA MER2_type -25 320 99 2016 99 0 19 chr1 33507904 33508216 -209156137 - AluSx SINE Alu -6 306 1 1636 125 61 51 chr1 33508216 33508311 -209156042 - MER2 DNA MER2_type -246 99 6 214 217 169 12 chr1 33509258 33509341 -209155012 - MIR SINE MIR -133 129 34 358 264 211 43 chr1 33509418 33509626 -209154727 - MIR SINE MIR -6 256 14 347 289 113 57 chr1 33509871 33510065 -209154288 - MIR SINE MIR 0 262 58 2402 98 0 13 chr1 33510179 33510494 -209153859 - AluSx SINE Alu 0 312 2 2231 114 3 16 chr1 33511059 33511365 -209152988 - AluSg SINE Alu -8 302 1 2251 120 0 0 chr1 33511365 33511664 -209152689 - AluSg SINE Alu -11 299 1 210 266 23 86 chr1 33511764 33511823 -209152530 + MIR SINE MIR 139 187 -75 2303 120 0 0 chr1 33511823 33512131 -209152222 - AluSq SINE Alu -5 308 1 210 266 23 86 chr1 33512131 33512199 -209152154 + MIR SINE MIR 187 258 -4 1818 168 3 26 chr1 33512199 33512503 -209151850 + AluJo SINE Alu 1 297 -15 2444 78 0 0 chr1 33512503 33512797 -209151556 + AluY SINE Alu 1 294 -17 2409 78 0 38 chr1 33513932 33514251 -209150102 - AluSg SINE Alu -3 307 1 224 288 168 8 chr1 33514252 33514377 -209149976 - MIR SINE MIR -46 216 72 22 70 0 0 chr1 33514908 33514951 -209149402 + GC_rich Low_complexity Low_complexity 1 43 0 213 279 7 45 chr1 33514956 33515110 -209149243 + (CGG)n Simple_repeat Simple_repeat 2 149 0 2252 91 14 3 chr1 33515214 33515501 -209148852 - AluSq SINE Alu -23 290 1 2540 65 0 3 chr1 33515630 33515936 -209148417 - AluY SINE Alu -6 305 1 532 221 326 11 chr1 33515966 33516156 -209148197 + MIR SINE MIR 13 262 0 2156 135 0 0 chr1 33516200 33516495 -209147858 + AluSx SINE Alu 1 295 -17 2422 77 3 0 chr1 33516495 33516793 -209147560 + AluSp SINE Alu 1 299 -14 2281 83 3 7 chr1 33518814 33519114 -209145239 - AluY SINE Alu -12 299 1 207 288 0 17 chr1 33519341 33519400 -209144953 + L3 LINE CR1 1517 1574 -3 1813 112 0 35 chr1 33520344 33520603 -209143750 + AluSx SINE Alu 10 259 -53 225 318 64 9 chr1 33521077 33521187 -209143166 + MIR SINE MIR 86 201 -61 * 422 241 132 61 chr1 33521184 33521396 -209142957 + MIR SINE MIR 10 236 -26 252 0 0 0 chr1 33521411 33521439 -209142914 + (TG)n Simple_repeat Simple_repeat 1 28 0 2157 111 0 0 chr1 33521439 33521718 -209142635 - AluSx SINE Alu -33 279 1 2118 114 0 38 chr1 33521727 33522042 -209142311 - AluSq SINE Alu -10 303 1 1794 98 0 4 chr1 33522045 33522270 -209142083 - AluSx SINE Alu -88 224 1 2340 106 0 0 chr1 33522375 33522676 -209141677 - AluSx SINE Alu -11 301 1 371 294 64 18 chr1 33523055 33523164 -209141189 - MIR SINE MIR -75 133 20 233 368 79 40 chr1 33523969 33524040 -209140313 - MIR3 SINE MIR -3 205 138 2169 107 13 10 chr1 33524040 33524340 -209140013 + AluSp SINE Alu 1 301 -12 233 368 79 40 chr1 33524340 33524420 -209139933 - MIR3 SINE MIR -70 138 48 462 18 0 0 chr1 33524420 33524475 -209139878 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 1764 153 28 0 chr1 33524477 33524759 -209139594 - AluJb SINE Alu -22 290 1 1682 145 33 43 chr1 33524766 33525070 -209139283 - AluSg SINE Alu -9 301 1 1011 184 0 0 chr1 33525086 33525244 -209139109 + FRAM SINE Alu 1 153 -23 21 71 0 0 chr1 33525549 33525591 -209138762 + AT_rich Low_complexity Low_complexity 1 42 0 996 271 18 96 chr1 33525747 33525800 -209138553 - MLT1K LTR MaLR -111 477 421 2239 119 0 20 chr1 33525800 33526103 -209138250 + AluSg SINE Alu 1 297 -13 1483 174 40 62 chr1 33526110 33526248 -209138105 + AluJb SINE Alu 1 141 -171 2320 67 0 51 chr1 33526248 33526564 -209137789 + AluY SINE Alu 1 300 -11 1844 68 5 0 chr1 33526565 33526787 -209137566 + AluSp SINE Alu 86 308 -5 1483 174 40 62 chr1 33526787 33526950 -209137403 + AluJb SINE Alu 140 297 -15 2412 82 3 3 chr1 33526952 33527256 -209137097 + AluY SINE Alu 1 304 -7 996 271 18 96 chr1 33527256 33527276 -209137077 - MLT1K LTR MaLR -174 414 394 1238 169 209 8 chr1 33527276 33527525 -209136828 - AluJo SINE Alu -12 300 2 996 271 18 96 chr1 33527525 33527938 -209136415 - MLT1K LTR MaLR -194 394 18 1747 157 10 43 chr1 33528032 33528331 -209136022 - AluJo SINE Alu -23 289 1 2418 65 0 3 chr1 33528508 33528800 -209135553 + AluY SINE Alu 1 291 -20 1447 127 0 42 chr1 33529016 33529252 -209135101 - AluJo SINE Alu 0 312 87 240 182 280 6 chr1 33529429 33529526 -209134827 + MIR SINE MIR 32 147 -63 207 0 0 0 chr1 33529698 33529721 -209134632 + (T)n Simple_repeat Simple_repeat 1 23 0 1912 131 84 0 chr1 33529977 33530251 -209134102 + AluSx SINE Alu 1 297 -15 719 201 11 49 chr1 33530336 33530485 -209133868 + L1M4 LINE L1 4907 5046 -1100 2277 102 3 0 chr1 33530485 33530779 -209133574 + AluSq SINE Alu 1 295 -18 719 201 11 49 chr1 33530779 33530840 -209133513 + L1M4 LINE L1 5046 5108 -1038 830 103 26 0 chr1 33530840 33530956 -209133397 + FLAM_C SINE Alu 1 119 -24 27 49 0 0 chr1 33530956 33530997 -209133356 + AT_rich Low_complexity Low_complexity 1 41 0 310 262 0 87 chr1 33531037 33531140 -209133213 - L1MC4 LINE L1 -1339 6703 6610 213 175 0 0 chr1 33531149 33531189 -209133164 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 365 215 0 0 chr1 33531208 33531273 -209133080 + AluJ/FLAM SINE Alu 4 68 -234 307 182 136 0 chr1 33531307 33531373 -209132980 - tRNA-Asp-GAC tRNA tRNA 0 75 1 2193 117 0 0 chr1 33531400 33531737 -209132616 - AluSx SINE Alu 0 337 1 1641 154 46 0 chr1 33531763 33532043 -209132310 - AluJb SINE Alu 0 302 11 2505 52 0 0 chr1 33532088 33532379 -209131974 + AluY SINE Alu 1 291 -20 714 170 0 0 chr1 33532388 33532500 -209131853 - FLAM_C SINE Alu -30 113 2 2134 143 0 0 chr1 33532528 33532822 -209131531 + AluJb SINE Alu 1 294 -18 1486 203 26 32 chr1 33532865 33533176 -209131177 + AluJo SINE Alu 1 309 -3 207 0 0 0 chr1 33533310 33533333 -209131020 + (A)n Simple_repeat Simple_repeat 1 23 0 548 290 54 91 chr1 33533333 33533783 -209130570 - L2 LINE L2 -56 3216 2781 206 350 60 8 chr1 33534028 33534145 -209130208 - L2 LINE L2 -14 3258 3136 231 323 47 39 chr1 33534609 33534736 -209129617 + L2 LINE L2 3145 3272 0 612 230 24 8 chr1 33535223 33535349 -209129004 + MIR SINE MIR 21 148 -114 1852 139 0 35 chr1 33535361 33535678 -209128675 + AluSg SINE Alu 1 306 -4 2548 70 0 10 chr1 33535678 33535992 -209128361 + AluY SINE Alu 1 311 0 2288 132 0 0 chr1 33536083 33536394 -209127959 + AluSx SINE Alu 1 311 -1 1527 45 0 6 chr1 33536544 33536721 -209127632 + AluY SINE Alu 22 197 -114 1665 146 11 14 chr1 33536887 33537167 -209127186 + AluSx SINE Alu 32 310 -2 251 254 41 76 chr1 33537289 33537486 -209126867 + HAL1b LINE L1 712 901 -447 2239 114 0 3 chr1 33537851 33538141 -209126212 - AluSx SINE Alu -17 295 7 863 175 0 0 chr1 33538186 33538323 -209126030 + AluY SINE Alu 146 282 -29 270 56 0 0 chr1 33538394 33538430 -209125923 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 794 237 0 13 chr1 33538552 33538728 -209125625 - FRAM SINE Alu 0 166 1 21 36 0 0 chr1 33538803 33538831 -209125522 + AT_rich Low_complexity Low_complexity 1 28 0 221 81 0 27 chr1 33539050 33539087 -209125266 + (TA)n Simple_repeat Simple_repeat 1 36 0 782 173 119 18 chr1 33539180 33539348 -209125005 - MER5A DNA MER1_type -4 185 1 2229 112 0 13 chr1 33539407 33539710 -209124643 - AluSx SINE Alu -4 308 10 992 96 0 0 chr1 33540318 33540443 -209123910 + AluSq/x SINE Alu 1 125 -187 2206 118 0 0 chr1 33540455 33540752 -209123601 + AluSx SINE Alu 1 297 -15 1713 168 42 0 chr1 33541092 33541377 -209122976 + AluJo SINE Alu 1 297 -15 1461 195 7 22 chr1 33541466 33541591 -209122762 + AluJo SINE Alu 1 126 -186 267 54 0 0 chr1 33541591 33541628 -209122725 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1461 195 7 22 chr1 33541628 33541779 -209122574 + AluJo SINE Alu 126 273 -39 397 196 9 9 chr1 33541781 33541888 -209122465 + GA-rich Low_complexity Low_complexity 2 108 0 1946 121 15 4 chr1 33541948 33542221 -209122132 + AluSx SINE Alu 1 276 -36 2120 83 25 4 chr1 33542436 33542747 -209121606 - AluSx SINE Alu 0 317 1 2088 75 65 4 chr1 33542781 33543059 -209121294 + AluSq SINE Alu 1 295 -18 203 329 12 37 chr1 33543101 33543183 -209121170 - MIR SINE MIR -91 117 38 222 184 0 20 chr1 33543224 33543248 -209121105 + GA-rich Low_complexity Low_complexity 1 24 -24 1630 167 40 47 chr1 33543248 33543547 -209120806 + AluJb SINE Alu 1 297 -15 222 184 0 20 chr1 33543547 33543571 -209120782 + GA-rich Low_complexity Low_complexity 24 48 0 873 95 7 36 chr1 33543573 33543710 -209120643 + FLAM_C SINE Alu 1 133 0 538 269 0 8 chr1 33543771 33543890 -209120463 + L2 LINE L2 3154 3271 -1 201 114 0 29 chr1 33543932 33543967 -209120386 - MIR SINE MIR -112 150 117 825 106 8 16 chr1 33544371 33544494 -209119859 + FLAM_A SINE Alu 21 142 0 185 304 155 6 chr1 33544693 33544814 -209119539 - L2 LINE L2 -1362 1952 1800 753 159 0 38 chr1 33544814 33544946 -209119407 + FLAM_C SINE Alu 1 127 -6 185 304 155 6 chr1 33544946 33544985 -209119368 - L2 LINE L2 -1514 1800 1768 2353 103 0 3 chr1 33544985 33545286 -209119067 + AluSp SINE Alu 1 300 -13 473 314 29 58 chr1 33545290 33545532 -209118821 - L2 LINE L2 -654 2660 2426 694 183 86 20 chr1 33545570 33545767 -209118586 - MER106B DNA MER1_type -2 1057 848 2027 157 3 0 chr1 33545768 33546067 -209118286 + AluJb SINE Alu 1 300 -12 2079 110 0 0 chr1 33546076 33546348 -209118005 + AluSc SINE Alu 14 285 -24 1988 119 18 14 chr1 33546535 33546695 -209117658 - AluSq SINE Alu -15 298 135 2410 84 0 28 chr1 33546695 33547016 -209117337 - AluSx SINE Alu 0 312 1 1988 119 18 14 chr1 33547016 33547133 -209117220 - AluSq SINE Alu -178 135 20 744 110 18 0 chr1 33547777 33547886 -209116467 + AluSp SINE Alu 2 112 -201 1581 186 0 28 chr1 33548094 33548412 -209115941 + AluSg SINE Alu 1 309 -1 505 244 107 6 chr1 33548437 33548605 -209115748 - MIR SINE MIR -21 241 57 582 219 33 79 chr1 33548909 33549124 -209115229 + L2 LINE L2 3094 3298 -15 2295 108 0 0 chr1 33549181 33549476 -209114877 + AluSx SINE Alu 1 295 -17 2091 130 3 3 chr1 33549718 33550019 -209114334 - AluSx SINE Alu -11 301 1 762 125 153 23 chr1 33550021 33550237 -209114116 - MER106B DNA MER1_type -262 797 554 1150 169 51 15 chr1 33550242 33550595 -209113758 - MER106B DNA MER1_type -657 402 1 747 201 57 45 chr1 33550615 33550859 -209113494 - MER46C DNA MER2_type -33 305 59 772 181 0 0 chr1 33550942 33551058 -209113295 - FLAM_C SINE Alu -26 117 2 245 204 0 0 chr1 33551062 33551106 -209113247 - MER46C DNA MER2_type -292 46 3 2206 103 11 0 chr1 33551234 33551516 -209112837 - AluSq SINE Alu -25 288 4 259 322 161 8 chr1 33551975 33552093 -209112260 - MIR SINE MIR -57 151 16 186 43 0 0 chr1 33552803 33552826 -209111527 + (CA)n Simple_repeat Simple_repeat 2 24 0 1826 170 0 3 chr1 33553274 33553562 -209110791 - AluJo SINE Alu -25 287 1 1163 163 34 118 chr1 33553562 33553918 -209110435 + L1M4 LINE L1 4472 4797 -1349 2256 113 0 7 chr1 33553918 33554219 -209110134 + AluSx SINE Alu 1 299 -13 603 250 0 15 chr1 33554252 33554384 -209109969 + L2 LINE L2 3184 3313 0 2203 99 0 3 chr1 33554419 33554729 -209109624 - AluSx SINE Alu 0 309 1 476 183 7 120 chr1 33555248 33555390 -209108963 - Charlie8 DNA MER1_type -2218 199 74 2184 84 29 0 chr1 33555410 33555738 -209108615 - AluSg1 SINE Alu 0 336 1 2584 34 0 7 chr1 33555888 33556184 -209108169 - AluY SINE Alu -17 294 1 462 263 39 179 chr1 33556335 33556492 -209107861 - L2 LINE L2 0 3272 3095 1955 160 0 25 chr1 33556492 33556811 -209107542 - AluJb SINE Alu -1 311 1 462 263 39 179 chr1 33556811 33557171 -209107182 - L2 LINE L2 -177 3095 2828 1054 147 25 0 chr1 33557178 33557341 -209107012 + FRAM SINE Alu 1 165 -11 457 287 52 55 chr1 33557407 33557752 -209106601 - L2 LINE L2 -613 2701 2358 1856 117 29 0 chr1 33557752 33558053 -209106300 - AluSx SINE Alu 0 310 2 1953 131 0 0 chr1 33558448 33558715 -209105638 + AluSx SINE Alu 29 295 -17 1850 159 17 13 chr1 33558861 33559163 -209105190 - AluJo SINE Alu -9 303 1 366 296 15 38 chr1 33559216 33559348 -209105005 - MARNA DNA Mariner -377 209 81 503 245 53 40 chr1 33559373 33559524 -209104829 - L2 LINE L2 0 3313 3161 1201 132 12 0 chr1 33559556 33559723 -209104630 + AluSx SINE Alu 1 169 -143 506 321 87 21 chr1 33559734 33560046 -209104307 - L2 LINE L2 -189 3124 2795 223 271 143 0 chr1 33560062 33560132 -209104221 - L2 LINE L2 -623 2691 2612 877 277 61 85 chr1 33560134 33560510 -209103843 - L2 LINE L2 -8 3264 2898 2455 92 3 9 chr1 33560585 33560900 -209103453 - AluSq SINE Alu 0 313 1 1222 141 0 0 chr1 33561125 33561302 -209103051 - AluSx SINE Alu -131 181 5 2213 78 0 7 chr1 33561484 33561777 -209102576 - AluY SINE Alu -20 291 1 1743 170 0 3 chr1 33561999 33562293 -209102060 - AluJb SINE Alu -15 297 5 457 240 31 0 chr1 33562402 33562498 -209101855 - MIR SINE MIR -56 206 108 2203 73 3 52 chr1 33562499 33562826 -209101527 + AluY SINE Alu 1 311 0 186 152 61 0 chr1 33562831 33562864 -209101489 - MIR SINE MIR -142 120 86 231 171 0 0 chr1 33562988 33563023 -209101330 - MIR SINE MIR -200 62 28 1881 114 0 11 chr1 33563025 33563306 -209101047 - AluSx SINE Alu -13 299 22 24 77 0 0 chr1 33563566 33563618 -209100735 + AT_rich Low_complexity Low_complexity 1 52 0 440 296 77 30 chr1 33563819 33564052 -209100301 - MIR SINE MIR -2 260 17 1538 135 77 4 chr1 33564285 33564544 -209099809 - AluSx SINE Alu -34 278 1 724 197 0 0 chr1 33565098 33565230 -209099123 + FLAM_C SINE Alu 2 133 0 1377 330 34 21 chr1 33565315 33565873 -209098480 + ERVL LTR ERVL 4795 5359 -405 2228 97 7 0 chr1 33565908 33566207 -209098146 - AluSx SINE Alu -11 301 1 712 241 83 29 chr1 33566222 33566500 -209097853 + LTR33 LTR ERVL 227 519 -2 23 0 0 0 chr1 33566548 33566571 -209097782 + AT_rich Low_complexity Low_complexity 1 23 0 2178 118 0 0 chr1 33566574 33566879 -209097474 + AluSx SINE Alu 2 306 -6 273 130 0 0 chr1 33566906 33566952 -209097401 + FRAM/FAM SINE Alu 40 85 -90 2211 97 3 0 chr1 33567179 33567477 -209096876 - AluSg SINE Alu -11 299 1 32 43 0 0 chr1 33567477 33567523 -209096830 + AT_rich Low_complexity Low_complexity 1 46 0 32 26 0 0 chr1 33567935 33567974 -209096379 + AT_rich Low_complexity Low_complexity 1 39 0 184 298 53 0 chr1 33568033 33568090 -209096263 - L2 LINE L2 -219 3053 2994 2230 77 6 26 chr1 33568091 33568403 -209095950 + AluY SINE Alu 1 306 -5 1880 72 4 12 chr1 33568522 33568773 -209095580 - AluY SINE Alu -62 249 1 182 307 40 50 chr1 33568927 33569028 -209095325 + L2 LINE L2 3166 3265 -7 715 160 13 20 chr1 33569185 33569335 -209095018 + L1MA10 LINE L1 6185 6333 -1 2300 81 3 0 chr1 33569344 33569641 -209094712 + AluSp SINE Alu 1 298 -15 194 209 127 6 chr1 33569759 33569818 -209094535 - MIR SINE MIR -116 92 34 1903 153 7 0 chr1 33570935 33571236 -209093117 + AluJo SINE Alu 1 303 -9 426 301 44 12 chr1 33571259 33571447 -209092906 + MIR SINE MIR 20 212 -50 1906 122 37 0 chr1 33572661 33572956 -209091397 - AluSg SINE Alu -4 306 1 183 129 0 0 chr1 33572984 33573015 -209091338 + (T)n Simple_repeat Simple_repeat 1 31 0 2196 84 10 0 chr1 33574250 33574547 -209089806 + AluSp SINE Alu 1 300 -13 2167 76 0 14 chr1 33574665 33574953 -209089400 + AluY SINE Alu 1 284 -27 2085 73 11 4 chr1 33575053 33575326 -209089027 - AluY SINE Alu -36 275 1 369 250 19 135 chr1 33575487 33575535 -209088818 + MIR SINE MIR 64 116 -146 2931 156 30 39 chr1 33575535 33576094 -209088259 - MLT2B3 LTR ERVL 0 554 1 369 250 19 135 chr1 33576094 33576136 -209088217 + MIR SINE MIR 116 161 -101 2199 69 0 10 chr1 33576136 33576448 -209087905 + AluSg SINE Alu 1 310 0 369 250 19 135 chr1 33576448 33576564 -209087789 + MIR SINE MIR 161 247 -15 2096 107 13 0 chr1 33576815 33577114 -209087239 + AluSg1 SINE Alu 6 308 -1 199 295 27 45 chr1 33577150 33577262 -209087091 - L2 LINE L2 -1 3312 3203 467 311 37 0 chr1 33577480 33577615 -209086738 + L2 LINE L2 2221 2360 -954 2077 111 0 3 chr1 33578070 33578390 -209085963 + AluSx SINE Alu 2 312 0 1217 104 0 0 chr1 33578390 33578553 -209085800 + AluSq SINE Alu 134 296 -17 1899 102 29 0 chr1 33578559 33578861 -209085492 + AluSx SINE Alu 1 310 0 442 287 52 55 chr1 33578861 33579206 -209085147 + L2 LINE L2 2358 2701 -613 973 147 25 0 chr1 33579272 33579435 -209084918 - FRAM SINE Alu -11 165 1 1842 152 0 26 chr1 33579803 33580112 -209084241 + AluJb SINE Alu 1 301 -11 415 338 61 0 chr1 33580132 33580280 -209084073 + L2 LINE L2 3116 3272 0 2449 34 0 7 chr1 33580431 33580727 -209083626 + AluY SINE Alu 1 294 -17 2010 85 33 0 chr1 33580877 33581204 -209083149 + AluSg1 SINE Alu 1 336 0 515 166 26 113 chr1 33581218 33581369 -209082984 + Charlie8 DNA MER1_type 62 199 -2218 2068 99 0 3 chr1 33581888 33582198 -209082155 + AluSx SINE Alu 1 309 0 603 250 0 15 chr1 33582233 33582365 -209081988 - L2 LINE L2 0 3313 3184 1762 123 41 7 chr1 33582394 33582687 -209081666 - AluSx SINE Alu -8 304 2 2502 43 0 3 chr1 33583422 33583725 -209080628 + AluY SINE Alu 1 302 -9 1463 158 11 15 chr1 33583735 33583995 -209080358 + AluJo SINE Alu 1 259 -53 21 0 0 0 chr1 33584016 33584037 -209080316 + AT_rich Low_complexity Low_complexity 1 21 0 674 225 71 12 chr1 33584086 33584255 -209080098 + MIR SINE MIR 72 250 -12 2125 71 0 49 chr1 33584271 33584611 -209079742 - AluY SINE Alu 0 325 1 183 305 124 56 chr1 33584703 33584936 -209079417 - L2 LINE L2 -349 2965 2717 1795 127 29 4 chr1 33585327 33585603 -209078750 + AluSx SINE Alu 16 298 -14 496 211 0 11 chr1 33586900 33586990 -209077363 - FLAM_A SINE Alu -48 94 6 2151 82 21 7 chr1 33588273 33588564 -209075789 + AluSq SINE Alu 1 295 -18 2217 105 0 0 chr1 33589725 33590030 -209074323 - AluSg SINE Alu -5 305 1 329 301 131 13 chr1 33593123 33593276 -209071077 - MIR SINE MIR -75 187 17 241 104 83 0 chr1 33593595 33593643 -209070710 - L1MA9 LINE L1 -35 6277 6226 2018 118 0 16 chr1 33594058 33594363 -209069990 - AluSx SINE Alu -6 306 7 1031 154 6 22 chr1 33594376 33594558 -209069795 - AluJ SINE Alu 0 312 134 186 43 0 0 chr1 33594558 33594581 -209069772 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2061 90 7 4 chr1 33594586 33594863 -209069490 - AluSc SINE Alu -31 278 1 30 0 0 0 chr1 33594863 33594893 -209069460 + AT_rich Low_complexity Low_complexity 1 30 0 2240 105 0 0 chr1 33595051 33595356 -209068997 - AluSx SINE Alu -6 306 2 816 145 0 0 chr1 33595362 33595486 -209068867 - AluJ SINE Alu -183 129 6 27 0 0 0 chr1 33597814 33597841 -209066512 + AT_rich Low_complexity Low_complexity 1 27 0 2132 99 7 0 chr1 33598380 33598682 -209065671 + AluSg SINE Alu 1 304 -6 30 0 0 0 chr1 33598839 33598869 -209065484 + AT_rich Low_complexity Low_complexity 1 30 0 2136 106 7 3 chr1 33598869 33599170 -209065183 + AluSc SINE Alu 1 302 -7 237 71 143 0 chr1 33599272 33599314 -209065039 + Alu SINE Alu 255 302 0 2173 81 11 0 chr1 33599342 33599626 -209064727 - AluSp SINE Alu -26 287 1 886 105 0 0 chr1 33599626 33599759 -209064594 - AluSg/x SINE Alu -6 306 174 891 179 61 30 chr1 33599759 33599840 -209064513 - MER33 DNA MER1_type -88 74 1 1420 144 12 102 chr1 33599840 33600174 -209064179 - AluJb SINE Alu -8 304 1 1860 167 0 0 chr1 33600178 33600484 -209063869 - AluJb SINE Alu -6 306 1 891 179 61 30 chr1 33600484 33600633 -209063720 - MER33 DNA MER1_type -167 4294967291 1 2436 67 0 0 chr1 33601202 33601500 -209062853 - AluSx SINE Alu -14 298 1 2083 94 0 7 chr1 33601772 33602060 -209062293 + AluSg SINE Alu 1 286 -24 2296 39 0 7 chr1 33602067 33602372 -209061981 + AluY SINE Alu 1 303 0 2057 93 0 81 chr1 33602382 33602716 -209061637 + AluSx SINE Alu 1 307 -5 1793 134 72 0 chr1 33602861 33603153 -209061200 + AluSq SINE Alu 1 313 0 457 268 0 0 chr1 33603169 33603292 -209061061 + L1ME3A LINE L1 5807 5929 -241 1879 140 7 0 chr1 33603354 33603662 -209060691 - AluSg SINE Alu 0 310 1 194 0 39 0 chr1 33603672 33603698 -209060655 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2565 170 127 75 chr1 33603699 33603722 -209060631 + L1MD2 LINE L1 5591 5611 -748 1289 134 95 141 chr1 33603722 33604028 -209060325 + AluJo SINE Alu 1 292 -10 2565 170 127 75 chr1 33604028 33604720 -209059633 + L1MD2 LINE L1 5611 6343 -16 1909 119 0 102 chr1 33605210 33605545 -209058808 - AluSx SINE Alu 0 302 2 1614 77 39 166 chr1 33605551 33605888 -209058465 - AluSc SINE Alu -11 298 5 2152 84 0 14 chr1 33606203 33606499 -209057854 + AluSc SINE Alu 1 292 -17 270 330 23 0 chr1 33606671 33606759 -209057594 - MIR SINE MIR -170 92 3 474 286 176 6 chr1 33606903 33607085 -209057268 + MIR SINE MIR 47 259 -3 2328 62 0 7 chr1 33607566 33607858 -209056495 + AluSx SINE Alu 1 290 -22 273 217 29 14 chr1 33608100 33608169 -209056184 + MIR SINE MIR 74 143 -65 2117 126 0 7 chr1 33608180 33608490 -209055863 + AluSx SINE Alu 5 312 0 1769 179 0 3 chr1 33608509 33608810 -209055543 + AluJb SINE Alu 1 300 -12 270 184 70 140 chr1 33609455 33609569 -209054784 - L2 LINE L2 -3 3269 3164 621 268 34 60 chr1 33609588 33609823 -209054530 - MIR SINE MIR -3 259 31 1551 135 22 93 chr1 33609885 33610027 -209054326 + AluJb SINE Alu 7 117 -195 2539 45 0 3 chr1 33610027 33610339 -209054014 + AluY SINE Alu 1 311 0 1551 135 22 93 chr1 33610339 33610507 -209053846 + AluJb SINE Alu 117 295 -17 203 229 300 0 chr1 33610590 33610660 -209053693 - L2 LINE L2 -12 3301 3211 2083 113 24 0 chr1 33610920 33611211 -209053142 - AluSg SINE Alu -12 298 1 684 121 0 0 chr1 33611226 33611317 -209053036 + AluSg/x SINE Alu 205 295 -15 288 263 12 25 chr1 33611354 33611434 -209052919 + MIR SINE MIR 78 156 -106 494 197 0 117 chr1 33611478 33611535 -209052818 + MIR SINE MIR 14 47 -215 1613 187 27 10 chr1 33611535 33611834 -209052519 + AluJo SINE Alu 1 304 -8 494 197 0 117 chr1 33611834 33611913 -209052440 + MIR SINE MIR 47 134 -128 2293 89 0 3 chr1 33612540 33612842 -209051511 - AluY SINE Alu -10 301 1 232 244 116 23 chr1 33616598 33616684 -209047669 - LTR67 LTR ERVL 0 557 464 254 192 110 27 chr1 33616904 33616977 -209047376 - MLT1K LTR MaLR -507 81 3 398 275 94 0 chr1 33616978 33617116 -209047237 - MIR SINE MIR -111 151 1 2220 108 3 10 chr1 33617155 33617469 -209046884 - AluSx SINE Alu 0 312 1 2177 124 0 3 chr1 33618115 33618414 -209045939 - AluSx SINE Alu -14 298 1 262 294 56 24 chr1 33618445 33618571 -209045782 + MIR SINE MIR 31 160 -102 1630 168 58 9 chr1 33618654 33618981 -209045372 - L1MB7 LINE L1 -20 6164 5822 307 326 104 0 chr1 33618982 33619117 -209045236 - L3 LINE CR1 -128 1449 1301 1330 191 19 27 chr1 33619180 33619442 -209044911 + AluJo SINE Alu 1 260 -52 304 296 11 34 chr1 33619443 33619531 -209044822 - Charlie8 DNA MER1_type -2331 86 1 3363 170 51 59 chr1 33619639 33619998 -209044355 - L1MB8 LINE L1 -1 6183 5823 2034 116 19 19 chr1 33619998 33620309 -209044044 - AluSx SINE Alu -1 311 1 3363 170 51 59 chr1 33620309 33620603 -209043750 - L1MB8 LINE L1 -361 5823 5528 2431 80 0 13 chr1 33620603 33620916 -209043437 - AluY SINE Alu -2 309 1 3363 170 51 59 chr1 33620916 33621436 -209042917 - L1MB8 LINE L1 -656 5528 5005 1832 160 0 22 chr1 33621436 33621775 -209042578 - AluSx SINE Alu 0 312 1 3363 170 51 59 chr1 33621775 33621855 -209042498 - L1MB8 LINE L1 -1179 5005 4926 2323 74 0 24 chr1 33621855 33622153 -209042200 - AluSx SINE Alu -21 291 1 3363 170 51 59 chr1 33622153 33622275 -209042078 - L1MB8 LINE L1 -1258 4926 4835 257 291 38 13 chr1 33622387 33622466 -209041887 - MIR SINE MIR -180 82 2 275 277 15 22 chr1 33623066 33623157 -209041196 - MIR SINE MIR -61 147 66 196 29 0 57 chr1 33623280 33623315 -209041038 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 225 79 53 0 chr1 33623315 33623353 -209041000 - HsTC2 DNA Tc2 -66 1832 1793 2470 70 0 0 chr1 33623354 33623652 -209040701 - AluY SINE Alu -13 298 1 254 175 70 0 chr1 33623775 33623832 -209040521 - MIR SINE MIR -96 166 106 1560 154 70 15 chr1 33623838 33624111 -209040242 + AluJo SINE Alu 1 288 -24 24 0 0 0 chr1 33624120 33624144 -209040209 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 33624340 33624363 -209039990 + AT_rich Low_complexity Low_complexity 1 23 0 1375 174 78 4 chr1 33624364 33624622 -209039731 - AluJo SINE Alu -31 281 5 434 259 74 22 chr1 33624662 33624755 -209039598 + MIR SINE MIR 117 221 -41 2166 88 35 3 chr1 33624755 33625038 -209039315 + AluSp SINE Alu 1 292 -21 434 259 74 22 chr1 33625038 33625079 -209039274 + MIR SINE MIR 221 258 -4 1247 105 189 0 chr1 33625639 33625830 -209038523 - MER30 DNA MER1_type 0 230 4 249 153 139 28 chr1 33625838 33625910 -209038443 - MIR SINE MIR -58 204 125 2304 86 0 3 chr1 33626121 33626413 -209037940 + AluSg SINE Alu 1 291 -19 588 243 166 77 chr1 33627769 33628131 -209036222 - L2 LINE L2 -4 3309 2916 1223 225 48 10 chr1 33628135 33628424 -209035929 - AluJb SINE Alu -12 300 1 219 69 0 0 chr1 33628430 33628459 -209035894 + (T)n Simple_repeat Simple_repeat 1 29 0 2428 41 10 3 chr1 33628473 33628764 -209035589 + AluY SINE Alu 1 293 -18 1867 109 0 11 chr1 33628788 33629053 -209035300 + AluSq SINE Alu 1 262 -51 1161 192 18 9 chr1 33629184 33629403 -209034950 - AluJb SINE Alu -91 221 1 289 298 64 35 chr1 33629502 33629673 -209034680 + L2 LINE L2 2158 2333 -981 541 281 48 30 chr1 33629701 33629868 -209034485 - MLT1K LTR MaLR -292 296 127 33 25 0 0 chr1 33629986 33630026 -209034327 + GC_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr1 33630093 33630118 -209034235 + GC_rich Low_complexity Low_complexity 1 25 0 230 293 6 44 chr1 33630181 33630362 -209033991 + G-rich Low_complexity Low_complexity 4 177 0 279 30 0 0 chr1 33631463 33631496 -209032857 - U2 snRNA snRNA -155 33 1 249 78 0 59 chr1 33631545 33631596 -209032757 - AluSx SINE Alu 0 303 256 1482 115 0 5 chr1 33631596 33631796 -209032557 - AluSx SINE Alu -98 214 16 1477 143 26 4 chr1 33631878 33632108 -209032245 + AluJb SINE Alu 1 235 -77 388 250 40 81 chr1 33632331 33632479 -209031874 - MIR SINE MIR -118 144 3 2202 101 10 3 chr1 33633683 33633989 -209030364 - AluSq SINE Alu -5 308 1 208 211 141 0 chr1 33634125 33634196 -209030157 - MIR SINE MIR -60 202 122 1679 141 44 11 chr1 33634221 33634491 -209029862 - AluSx SINE Alu -7 305 27 1657 155 8 0 chr1 33634701 33634966 -209029387 + AluJb SINE Alu 35 301 -11 2449 50 7 7 chr1 33637612 33637910 -209026443 - AluY SINE Alu -13 298 1 2305 109 10 0 chr1 33639246 33639549 -209024804 - AluSx SINE Alu -6 306 1 227 71 91 40 chr1 33639687 33639786 -209024567 + (TTATA)n Simple_repeat Simple_repeat 5 108 0 28 0 0 0 chr1 33639791 33639819 -209024534 + AT_rich Low_complexity Low_complexity 1 28 0 1015 268 175 39 chr1 33640211 33640427 -209023926 + L2 LINE L2 2462 2647 -666 2536 102 0 38 chr1 33640427 33640799 -209023554 - L1PA15 LINE L1 0 6165 5808 1015 268 175 39 chr1 33640799 33641327 -209023026 + L2 LINE L2 2647 3313 0 183 42 0 0 chr1 33641793 33641817 -209022536 + (TA)n Simple_repeat Simple_repeat 2 25 0 2017 106 53 7 chr1 33641817 33642100 -209022253 - AluSc SINE Alu -10 299 4 2293 67 0 20 chr1 33642195 33642494 -209021859 - AluY SINE Alu -18 293 1 272 289 44 9 chr1 33642940 33643054 -209021299 - L1MC4a LINE L1 -1895 5913 5796 1772 126 3 69 chr1 33644136 33644333 -209020020 + AluJo SINE Alu 1 171 -141 2839 10 0 0 chr1 33644333 33644637 -209019716 + AluY SINE Alu 1 304 -7 1772 126 3 69 chr1 33644637 33644756 -209019597 + AluJo SINE Alu 171 296 -16 1975 111 75 0 chr1 33644758 33645038 -209019315 + AluSg SINE Alu 1 301 -9 1718 153 28 0 chr1 33645045 33645384 -209018969 + AluJb SINE Alu 1 347 0 240 338 0 13 chr1 33645384 33645461 -209018892 + MIR SINE MIR 48 123 -85 2158 104 14 0 chr1 33645475 33645764 -209018589 - AluSp SINE Alu -20 293 1 376 294 64 18 chr1 33646640 33646749 -209017604 + MIR SINE MIR 20 133 -75 2340 103 0 0 chr1 33647129 33647430 -209016923 + AluSx SINE Alu 1 301 -11 2361 105 3 0 chr1 33647500 33647805 -209016548 - AluSp SINE Alu -7 306 1 2403 95 3 0 chr1 33647816 33648122 -209016231 - AluSp SINE Alu -6 307 1 466 257 74 20 chr1 33649352 33649500 -209014853 - MIR SINE MIR -84 178 23 2269 81 10 0 chr1 33649703 33649998 -209014355 - AluY SINE Alu -13 298 1 2128 73 91 0 chr1 33649999 33650273 -209014080 - AluSc SINE Alu -10 299 1 324 179 35 14 chr1 33650353 33650435 -209013918 - MIR SINE MIR -64 144 84 726 256 47 35 chr1 33651211 33651510 -209012843 - L1MC4a LINE L1 -298 5823 5520 2465 78 0 3 chr1 33651594 33651903 -209012450 - AluSg SINE Alu -2 308 1 24 0 0 0 chr1 33651954 33651978 -209012375 + AT_rich Low_complexity Low_complexity 1 24 0 1539 208 44 7 chr1 33652140 33652438 -209011915 + AluJb SINE Alu 1 309 -3 1060 174 12 0 chr1 33652444 33652611 -209011742 + AluJb SINE Alu 133 301 -11 1657 168 25 4 chr1 33653602 33653876 -209010477 + AluJb SINE Alu 1 280 -32 2017 68 0 8 chr1 33654305 33654568 -209009785 + L1P5 LINE L1 5410 5670 -481 201 74 0 0 chr1 33654569 33654596 -209009757 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1759 136 3 58 chr1 33657371 33657681 -209006672 + AluJb SINE Alu 1 293 -19 2400 68 7 3 chr1 33658281 33658573 -209005780 - AluSc SINE Alu -16 293 1 208 135 0 0 chr1 33659714 33659751 -209004602 + (A)n Simple_repeat Simple_repeat 1 37 0 766 0 21 0 chr1 33659759 33659853 -209004500 + (TA)n Simple_repeat Simple_repeat 2 97 0 438 20 0 0 chr1 33661179 33661230 -209003123 + (TG)n Simple_repeat Simple_repeat 1 51 0 1680 173 20 23 chr1 33661607 33661914 -209002439 + AluJb SINE Alu 1 300 -12 361 253 0 22 chr1 33662158 33662249 -209002104 - FAM SINE Alu -5 170 82 901 184 10 46 chr1 33662571 33662767 -209001586 + AluJb SINE Alu 86 274 -38 1678 248 224 51 chr1 33662776 33663016 -209001337 + L2 LINE L2 949 1146 -2168 898 183 12 18 chr1 33663016 33663180 -209001173 + FAM SINE Alu 2 164 -11 1678 248 224 51 chr1 33663180 33663407 -209000946 + L2 LINE L2 1146 1332 -1982 2214 94 7 0 chr1 33663407 33663704 -209000649 - AluSg SINE Alu -11 299 1 1678 248 224 51 chr1 33663704 33664048 -209000305 + L2 LINE L2 1332 1615 -1699 1823 128 44 3 chr1 33664048 33664345 -209000008 + AluSx SINE Alu 1 309 -3 1678 248 224 51 chr1 33664345 33664374 -208999979 + L2 LINE L2 1615 1937 -1377 871 160 60 0 chr1 33664378 33664528 -208999825 - FRAM SINE Alu -22 154 1 213 36 0 0 chr1 33664532 33664538 -208999815 + (T)n Simple_repeat Simple_repeat 1 6 -22 1670 96 167 0 chr1 33664538 33664789 -208999564 + AluSx SINE Alu 1 293 -9 213 36 0 0 chr1 33664789 33664810 -208999543 + (T)n Simple_repeat Simple_repeat 5 28 0 2174 92 0 0 chr1 33664833 33665136 -208999217 - AluSx SINE Alu 0 303 1 581 211 0 0 chr1 33665144 33665248 -208999105 - FLAM_C SINE Alu -35 108 5 228 188 145 29 chr1 33665250 33665319 -208999034 + L2 LINE L2 1940 2016 -1298 1769 180 109 33 chr1 33665351 33665802 -208998551 + MLT1D LTR MaLR 21 505 0 243 288 80 8 chr1 33665806 33665931 -208998422 + L2 LINE L2 2014 2147 -1167 612 282 208 20 chr1 33665995 33666101 -208998252 + L2 LINE L2 3008 3093 -220 2162 97 19 13 chr1 33666101 33666411 -208997942 - AluSp SINE Alu -1 312 1 612 282 208 20 chr1 33666411 33666559 -208997794 + L2 LINE L2 3093 3310 -3 1173 152 24 80 chr1 33666696 33666946 -208997407 + L1MB5 LINE L1 5433 5668 -516 573 209 2 36 chr1 33666967 33667111 -208997242 + L1MB5 LINE L1 6022 6144 -27 234 193 0 53 chr1 33667270 33667327 -208997026 + MLT1K LTR MaLR 182 235 -353 2131 118 0 0 chr1 33667348 33667645 -208996708 - AluSx SINE Alu -15 297 1 511 262 43 28 chr1 33668024 33668165 -208996188 - L2 LINE L2 -33 3280 3138 1105 150 0 0 chr1 33668165 33668332 -208996021 + AluJb SINE Alu 59 225 -87 270 290 30 20 chr1 33668363 33668463 -208995890 + MER5B DNA MER1_type 7 107 -71 2397 74 3 0 chr1 33668829 33669139 -208995214 - AluY SINE Alu 0 311 1 347 252 222 63 chr1 33669389 33669569 -208994784 - MIR SINE MIR 0 262 46 2136 109 6 3 chr1 33669569 33669881 -208994472 + AluSq SINE Alu 1 313 0 347 252 222 63 chr1 33669881 33669932 -208994421 - MIR SINE MIR -216 46 4 2137 106 0 0 chr1 33671191 33671484 -208992869 - AluSg SINE Alu -13 297 5 1914 141 0 3 chr1 33671523 33671813 -208992540 - AluSx SINE Alu -23 289 1 5423 154 24 24 chr1 33671813 33672463 -208991890 - L1PA16 LINE L1 -195 5971 5323 1895 161 0 0 chr1 33672463 33672767 -208991586 - AluJo SINE Alu -8 304 1 5423 154 24 24 chr1 33672767 33673931 -208990422 - L1PA16 LINE L1 -843 5323 4150 2397 60 0 3 chr1 33673940 33674241 -208990112 - AluY SINE Alu -11 300 1 471 288 50 0 chr1 33674290 33674429 -208989924 - MIR SINE MIR -113 149 4 286 290 138 22 chr1 33674470 33674608 -208989745 + L2 LINE L2 353 506 -2808 317 304 0 0 chr1 33674900 33674992 -208989361 + (TA)n Simple_repeat Simple_repeat 2 93 0 3386 163 94 71 chr1 33674992 33675332 -208989021 + MER63C DNA MER1_type 49 380 -680 1437 198 29 0 chr1 33675332 33675605 -208988748 - AluJo SINE Alu -31 281 1 3386 163 94 71 chr1 33675605 33676041 -208988312 + MER63C DNA MER1_type 380 848 -212 2212 99 3 0 chr1 33676041 33676334 -208988019 + AluSp SINE Alu 1 294 -19 3386 163 94 71 chr1 33676334 33676410 -208987943 + MER63C DNA MER1_type 848 921 -9 803 275 45 75 chr1 33676548 33676973 -208987380 + L2 LINE L2 2053 2464 -850 1875 123 7 7 chr1 33676979 33677272 -208987081 - AluJb SINE Alu -15 297 5 1418 171 0 4 chr1 33677273 33677518 -208986835 - AluJb SINE Alu -64 248 5 520 221 0 25 chr1 33677618 33677740 -208986613 + MIR SINE MIR 4 122 -140 1629 107 9 0 chr1 33677743 33677967 -208986386 - AluSg/x SINE Alu -16 296 71 1126 137 0 33 chr1 33677974 33678138 -208986215 - MLT1C LTR MaLR -291 176 17 2045 135 96 3 chr1 33678138 33678472 -208985881 + MLT1A1 LTR MaLR 1 365 0 1126 137 0 33 chr1 33678472 33678489 -208985864 - MLT1C LTR MaLR -450 17 1 269 282 97 10 chr1 33678620 33678723 -208985630 + L2 LINE L2 2618 2729 -585 2264 91 3 10 chr1 33678855 33679163 -208985190 - AluSq SINE Alu -2 311 6 24 0 0 0 chr1 33679166 33679190 -208985163 + AT_rich Low_complexity Low_complexity 1 24 0 4327 141 48 68 chr1 33679201 33679592 -208984761 + L1MB5 LINE L1 5283 5680 -494 2266 80 7 0 chr1 33679592 33679893 -208984460 + AluSp SINE Alu 11 313 0 4327 141 48 68 chr1 33679893 33680033 -208984320 + L1MB5 LINE L1 5680 5821 -353 2200 104 0 13 chr1 33680033 33680340 -208984013 + AluSx SINE Alu 1 303 -9 4327 141 48 68 chr1 33680340 33680709 -208983644 + L1MB5 LINE L1 5821 6166 -8 2094 138 11 28 chr1 33680722 33681083 -208983270 + L1MB5 LINE L1 5812 6166 -8 305 333 52 22 chr1 33681089 33681224 -208983129 - L1ME LINE L1 -460 5661 5523 2169 97 7 0 chr1 33681275 33681583 -208982770 + AluSx SINE Alu 1 310 -2 244 171 53 40 chr1 33681740 33681816 -208982537 - MER20B DNA MER1_type -30 753 677 699 261 78 23 chr1 33681824 33682042 -208982311 + MIR SINE MIR 5 234 -28 768 220 101 10 chr1 33682044 33682253 -208982100 - MER20B DNA MER1_type -143 640 413 1994 104 0 0 chr1 33682253 33682522 -208981831 - AluSx SINE Alu -43 269 1 555 254 69 0 chr1 33682557 33682687 -208981666 - MER20B DNA MER1_type -549 234 96 1553 159 0 39 chr1 33682838 33683121 -208981232 - AluJo SINE Alu -40 272 1 679 240 162 44 chr1 33683289 33683454 -208980899 + L2 LINE L2 2555 2699 -614 2311 68 3 0 chr1 33683454 33683746 -208980607 + AluSp SINE Alu 1 293 -20 679 240 162 44 chr1 33683746 33684117 -208980236 + L2 LINE L2 2699 3146 -167 1862 144 3 16 chr1 33684285 33684598 -208979755 + AluJb SINE Alu 1 309 -3 464 219 21 0 chr1 33684600 33684696 -208979657 - L1ME2 LINE L1 -43 6121 6024 2297 210 14 54 chr1 33684760 33685004 -208979349 - L1ME1 LINE L1 -5 6161 5909 2497 56 0 3 chr1 33685004 33685309 -208979044 - AluY SINE Alu -7 304 1 2297 210 14 54 chr1 33685309 33685640 -208978713 - L1ME1 LINE L1 -257 5909 5609 2318 86 0 0 chr1 33685647 33685948 -208978405 - AluSg SINE Alu -7 303 3 247 253 27 131 chr1 33686558 33686855 -208977498 - L1MC4a LINE L1 -1755 6053 5788 289 266 127 81 chr1 33687060 33687233 -208977120 - MER5A DNA MER1_type -2 187 7 235 150 33 0 chr1 33687423 33687483 -208976870 + CT-rich Low_complexity Low_complexity 1 62 0 296 290 234 0 chr1 33687661 33687785 -208976568 - MIR SINE MIR -24 238 86 2036 103 43 0 chr1 33687865 33688147 -208976206 - AluSg SINE Alu -15 295 2 287 281 65 29 chr1 33688180 33688319 -208976034 - HAL1b LINE L1 -13 1335 1192 1855 131 0 10 chr1 33688376 33688667 -208975686 - AluSx SINE Alu -24 288 1 605 206 45 81 chr1 33688677 33688839 -208975514 - L1ME2 LINE L1 -189 5932 5781 1821 136 34 14 chr1 33688839 33689133 -208975220 - AluSx SINE Alu -12 300 1 605 206 45 81 chr1 33689133 33689217 -208975136 - L1ME2 LINE L1 -340 5781 5695 874 283 26 4 chr1 33689231 33689457 -208974896 - MIR SINE MIR -12 250 20 967 216 108 4 chr1 33690024 33690274 -208974079 - LTR16C LTR ERVL -14 477 202 1318 172 0 117 chr1 33690314 33690467 -208973886 + AluJb SINE Alu 2 95 -217 327 49 0 0 chr1 33690467 33690508 -208973845 + (CA)n Simple_repeat Simple_repeat 2 42 0 1318 172 0 117 chr1 33690508 33690697 -208973656 + AluJb SINE Alu 95 304 -8 2175 112 0 3 chr1 33690722 33691034 -208973319 + AluSx SINE Alu 1 311 -1 1056 260 46 72 chr1 33691544 33692055 -208972298 - L1MEc LINE L1 -3191 3024 2533 1866 126 0 52 chr1 33692055 33692381 -208971972 + AluSq SINE Alu 1 309 -4 1056 260 46 72 chr1 33692381 33692527 -208971826 - L1MEc LINE L1 -3682 2533 2385 1403 211 71 50 chr1 33692557 33692936 -208971417 + MSTD LTR MaLR 1 387 -9 316 210 25 136 chr1 33692937 33692980 -208971373 - L1MEc LINE L1 -3840 2375 2329 1458 171 10 45 chr1 33692980 33693289 -208971064 - AluJb SINE Alu -8 304 7 316 210 25 136 chr1 33693289 33693407 -208970946 - L1MEc LINE L1 -3886 2329 2232 1771 143 14 0 chr1 33693476 33693783 -208970570 + AluSq SINE Alu 1 311 0 1891 152 0 10 chr1 33693796 33693974 -208970379 - AluJb SINE Alu -1 311 136 2117 95 0 10 chr1 33693974 33694269 -208970084 - AluSc SINE Alu -17 292 1 1891 152 0 10 chr1 33694269 33694400 -208969953 - AluJb SINE Alu -176 136 5 377 273 0 58 chr1 33694408 33694529 -208969824 - L1MEc LINE L1 -4653 1743 1630 490 110 0 0 chr1 33694531 33694624 -208969729 + L1MEc LINE L1 1859 1935 -4605 998 297 90 41 chr1 33694635 33694914 -208969439 + L2 LINE L2 2352 2616 -697 1654 157 3 20 chr1 33694914 33695219 -208969134 - AluJb SINE Alu -12 300 1 998 297 90 41 chr1 33695219 33695241 -208969112 + L2 LINE L2 2616 2635 -678 1520 111 4 45 chr1 33695241 33695522 -208968831 - AluSg SINE Alu 0 319 49 998 297 90 41 chr1 33695522 33695598 -208968755 + L2 LINE L2 2635 2706 -607 2212 104 0 0 chr1 33695598 33695905 -208968448 + AluSx SINE Alu 1 307 -5 998 297 90 41 chr1 33695905 33696211 -208968142 + L2 LINE L2 2706 3083 -230 1183 102 0 18 chr1 33696211 33696378 -208967975 - AluSg/x SINE Alu -15 295 132 2178 99 0 10 chr1 33696379 33696673 -208967680 - AluSx SINE Alu -20 292 2 493 263 189 6 chr1 33696697 33696872 -208967481 + L2 LINE L2 3107 3313 0 576 244 37 30 chr1 33697081 33697245 -208967108 - MER63A DNA MER1_type -1 209 45 1518 188 0 41 chr1 33697582 33697756 -208966597 - AluJo SINE Alu -4 308 151 1836 154 27 0 chr1 33697756 33698049 -208966304 - AluSx SINE Alu -11 301 1 1518 188 0 41 chr1 33698049 33698193 -208966160 - AluJo SINE Alu -161 151 3 377 183 0 0 chr1 33698470 33698530 -208965823 + MER63 DNA MER1_type 679 738 -322 360 253 133 42 chr1 33698833 33698999 -208965354 + MIR SINE MIR 46 226 -36 270 276 99 75 chr1 33699003 33699297 -208965056 - L1ME LINE L1 -466 5655 5355 2279 85 0 3 chr1 33699302 33699596 -208964757 - AluSq SINE Alu -20 293 1 318 291 205 25 chr1 33699665 33700334 -208964019 - L2 LINE L2 -713 2601 1813 1962 128 0 10 chr1 33700471 33700776 -208963577 - AluJo SINE Alu -10 302 1 352 155 17 0 chr1 33700899 33700957 -208963396 + MER53 DNA DNA 1 59 -130 3265 167 42 32 chr1 33700957 33701563 -208962790 - MER49 LTR ERV1 0 923 309 1571 130 37 83 chr1 33701563 33701887 -208962466 - AluSg SINE Alu -1 309 1 3265 167 42 32 chr1 33701887 33701902 -208962451 - MER49 LTR ERV1 -614 309 296 800 141 0 90 chr1 33701902 33702058 -208962295 - FLAM_C SINE Alu 0 143 2 1573 172 0 86 chr1 33702059 33702194 -208962159 - MER49 LTR ERV1 -611 312 167 1799 130 0 7 chr1 33702194 33702464 -208961889 - AluSx SINE Alu -40 272 5 1573 172 0 86 chr1 33702464 33702665 -208961688 - MER49 LTR ERV1 -756 167 5 280 227 0 0 chr1 33702669 33702735 -208961618 + MER53 DNA DNA 56 121 -68 427 312 84 30 chr1 33702789 33702865 -208961488 - L1ME LINE L1 -1113 5033 4963 2103 107 0 10 chr1 33702865 33703173 -208961180 - AluSx SINE Alu -7 305 1 427 312 84 30 chr1 33703173 33703333 -208961020 - L1ME LINE L1 -1183 4963 4784 2179 225 43 47 chr1 33703334 33703886 -208960467 + MER74B LTR ERVL 55 604 -18 414 57 0 0 chr1 33703892 33703945 -208960408 + (TA)n Simple_repeat Simple_repeat 1 53 0 1955 122 3 0 chr1 33703957 33704245 -208960108 - AluSx SINE Alu -23 289 1 244 226 0 0 chr1 33704269 33704322 -208960031 - L1 LINE L1 -1361 4785 4733 2037 131 0 0 chr1 33704558 33704849 -208959504 - AluSx SINE Alu -21 291 1 400 318 81 28 chr1 33704876 33705407 -208958946 - L1 LINE L1 -1815 4331 3773 326 235 42 42 chr1 33705434 33705553 -208958800 - L1 LINE L1 -2286 3860 3742 1202 169 127 15 chr1 33705620 33705887 -208958466 - AluJo SINE Alu -14 298 2 204 205 0 0 chr1 33706095 33706134 -208958219 - MIR SINE MIR -112 150 112 1325 213 37 67 chr1 33706205 33706581 -208957772 - MLT1A1 LTR MaLR 0 365 1 2029 124 0 7 chr1 33706601 33706900 -208957453 + AluSx SINE Alu 1 297 -15 253 236 0 0 chr1 33707003 33707058 -208957295 + MIR SINE MIR 202 256 -6 1684 145 7 45 chr1 33707375 33707685 -208956668 - AluJo SINE Alu -12 300 3 2951 159 64 2 chr1 33707735 33708220 -208956133 + MLT2B3 LTR ERVL 1 515 -39 204 185 19 19 chr1 33708220 33708274 -208956079 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 2102 127 0 0 chr1 33708283 33708590 -208955763 - AluSx SINE Alu -2 310 4 606 69 38 38 chr1 33708597 33708756 -208955597 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 240 170 19 38 chr1 33708771 33708786 -208955567 + MLT2B3 LTR ERVL 503 517 -37 243 0 0 0 chr1 33708786 33708813 -208955540 + (TCCA)n Simple_repeat Simple_repeat 2 28 0 240 170 19 38 chr1 33708813 33708850 -208955503 + MLT2B3 LTR ERVL 517 554 0 339 208 0 73 chr1 33709720 33709816 -208954537 - MIR SINE MIR 0 262 174 334 267 10 20 chr1 33709819 33709920 -208954433 + L2 LINE L2 1225 1324 -1990 2816 206 105 125 chr1 33709921 33710604 -208953749 + L2 LINE L2 1575 2270 -1043 883 136 14 0 chr1 33710604 33710775 -208953578 + FRAM SINE Alu 1 172 0 2816 206 105 125 chr1 33710775 33711245 -208953108 + L2 LINE L2 2270 2748 -565 2206 119 0 0 chr1 33711245 33711555 -208952798 - AluSg SINE Alu 0 310 1 2816 206 105 125 chr1 33711555 33712018 -208952335 + L2 LINE L2 2748 3306 -7 325 280 160 0 chr1 33712092 33712192 -208952161 - MIR SINE MIR -135 127 12 255 274 103 68 chr1 33712446 33712563 -208951790 + L2 LINE L2 3193 3313 0 189 286 48 0 chr1 33712787 33712850 -208951503 + MIR SINE MIR 80 145 -117 953 154 7 147 chr1 33713091 33713377 -208950976 - MLT1A1 LTR MaLR 0 365 120 2176 90 18 0 chr1 33713389 33713703 -208950650 - AluSp SINE Alu 0 319 1 1338 151 0 5 chr1 33713705 33713910 -208950443 - AluJb SINE Alu -23 289 86 481 209 18 9 chr1 33713913 33714023 -208950330 - MLT1A1 LTR MaLR -254 111 1 251 272 10 0 chr1 33714069 33714172 -208950181 + GA-rich Low_complexity Low_complexity 1 104 0 481 239 173 35 chr1 33714179 33714435 -208949918 - L1 LINE L1 -2629 3517 3230 1499 201 72 0 chr1 33714435 33714599 -208949754 - AluJb SINE Alu -8 304 110 198 0 0 0 chr1 33714599 33714621 -208949732 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 1499 201 72 0 chr1 33714621 33714735 -208949618 - AluJb SINE Alu -202 110 6 481 239 173 35 chr1 33714735 33714747 -208949606 - L1 LINE L1 -2916 3230 3221 216 86 0 0 chr1 33714752 33714787 -208949566 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2255 92 27 0 chr1 33714793 33715085 -208949268 - AluSx SINE Alu -12 300 1 5235 49 0 2 chr1 33715141 33715769 -208948584 + L1PA5 LINE L1 5522 6148 -6 2851 29 0 0 chr1 33715771 33716080 -208948273 + AluY SINE Alu 1 309 -2 1849 96 96 28 chr1 33716091 33716373 -208947980 + AluY SINE Alu 1 301 -10 633 206 56 19 chr1 33716380 33716540 -208947813 + L1MC5 LINE L1 5596 5761 -2047 1467 153 0 0 chr1 33716546 33716768 -208947585 + AluJb SINE Alu 1 222 -90 1203 219 48 91 chr1 33716857 33717212 -208947141 + L1MC5 LINE L1 6415 6784 -1203 2294 126 0 0 chr1 33717212 33717514 -208946839 + AluSg SINE Alu 1 302 -8 1203 219 48 91 chr1 33717514 33718021 -208946332 + L1MC5 LINE L1 6784 7250 -737 1094 273 27 30 chr1 33718166 33718500 -208945853 - LTR16C LTR ERVL 0 491 159 314 264 75 0 chr1 33718643 33718749 -208945604 + L1MC5 LINE L1 7348 7461 -500 596 276 60 24 chr1 33718750 33719000 -208945353 - LTR16C LTR ERVL -136 355 97 247 301 0 11 chr1 33719645 33719757 -208944596 + CT-rich Low_complexity Low_complexity 1 110 0 2354 99 7 0 chr1 33719873 33720175 -208944178 - AluSx SINE Alu -8 304 1 213 39 0 0 chr1 33720217 33720243 -208944110 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 587 201 48 109 chr1 33720460 33720824 -208943529 + L2 LINE L2 2736 3081 -232 620 257 58 15 chr1 33720946 33721297 -208943056 - L1ME LINE L1 -483 5638 5259 2378 98 141 5 chr1 33721584 33721961 -208942392 + MSTA LTR MaLR 1 428 0 408 278 161 56 chr1 33722719 33722995 -208941358 - L1ME LINE L1 -1098 5048 4802 1151 101 10 30 chr1 33722995 33723193 -208941160 + L1MB3 LINE L1 5987 6180 -3 408 278 161 56 chr1 33723193 33723300 -208941053 - L1ME LINE L1 -1344 4802 4708 1636 157 3 74 chr1 33723300 33723467 -208940886 - AluJo SINE Alu -11 301 167 2439 74 10 19 chr1 33723467 33723777 -208940576 - AluSq SINE Alu -6 307 1 1636 157 3 74 chr1 33723777 33723933 -208940420 - AluJo SINE Alu -145 167 1 408 278 161 56 chr1 33723933 33724156 -208940197 - L1ME LINE L1 -1438 4708 4377 298 339 119 8 chr1 33724511 33724629 -208939724 + MIR SINE MIR 17 147 -61 324 293 37 0 chr1 33724648 33724730 -208939623 + L2 LINE L2 3119 3203 -69 624 250 61 0 chr1 33724731 33724895 -208939458 - MER91A DNA MER1_type 0 196 23 196 283 67 0 chr1 33724904 33724964 -208939389 + L2 LINE L2 3209 3272 0 351 0 0 0 chr1 33724981 33725020 -208939333 + (GA)n Simple_repeat Simple_repeat 1 39 0 213 294 39 49 chr1 33725344 33725446 -208938907 - L2 LINE L2 -339 2974 2874 2527 30 40 0 chr1 33725661 33725958 -208938395 + AluY SINE Alu 1 309 -2 192 343 176 0 chr1 33725958 33726066 -208938287 + MIR SINE MIR 59 185 -77 249 277 27 0 chr1 33726101 33726213 -208938140 + HAL1 LINE L1 2029 2143 -364 289 259 58 29 chr1 33726213 33726352 -208938001 - L1ME LINE L1 -1978 4168 4026 512 89 0 12 chr1 33726501 33726605 -208937748 - L1PA3 LINE L1 0 6168 6066 2095 131 3 13 chr1 33726605 33726903 -208937450 - AluSx SINE Alu -17 295 1 2286 90 6 10 chr1 33727099 33727410 -208936943 - AluSg SINE Alu 0 310 1 1836 159 3 37 chr1 33727583 33727904 -208936449 + AluJb SINE Alu 1 310 -2 770 253 44 24 chr1 33728025 33728274 -208936079 - HAL1b LINE L1 -784 564 311 228 67 0 0 chr1 33728275 33728305 -208936048 + (TG)n Simple_repeat Simple_repeat 1 30 0 2065 129 0 4 chr1 33728305 33728585 -208935768 - AluSx SINE Alu -33 279 1 922 91 0 61 chr1 33728697 33728829 -208935524 - AluSq/x SINE Alu -183 130 7 2309 60 60 0 chr1 33728893 33729174 -208935179 - AluSp SINE Alu -15 298 1 405 236 0 0 chr1 33729318 33729390 -208934963 + FRAM SINE Alu 74 145 -31 313 207 24 12 chr1 33729394 33729476 -208934877 + L2 LINE L2 2977 3059 -213 426 294 43 56 chr1 33730016 33730247 -208934106 + MIR SINE MIR 20 247 -15 249 267 9 52 chr1 33730378 33730494 -208933859 - L1ME LINE L1 -268 5853 5743 850 275 18 9 chr1 33731033 33731262 -208933091 - MIR SINE MIR -29 233 3 253 337 72 36 chr1 33731323 33731489 -208932864 - L2 LINE L2 -219 3053 2882 443 247 0 11 chr1 33731550 33731643 -208932710 - L2 LINE L2 -43 3229 3138 423 0 0 0 chr1 33731875 33731922 -208932431 + (TG)n Simple_repeat Simple_repeat 2 48 0 823 126 118 0 chr1 33731922 33732048 -208932305 - FRAM SINE Alu -147 165 21 395 247 39 77 chr1 33732295 33732477 -208931876 + LTR67 LTR ERVL 120 294 -263 242 311 44 0 chr1 33732537 33732627 -208931726 + LTR67 LTR ERVL 456 549 -8 2581 122 20 54 chr1 33732656 33733100 -208931253 + Tigger2a DNA MER2_type 2 430 -4 192 324 86 9 chr1 33733105 33733210 -208931143 - MIR SINE MIR -131 131 19 1904 114 11 37 chr1 33733470 33733619 -208930734 - AluSx SINE Alu -36 276 136 2167 95 47 3 chr1 33733619 33733915 -208930438 - AluSp SINE Alu -4 309 1 1904 114 11 37 chr1 33733915 33734038 -208930315 - AluSx SINE Alu -176 136 11 246 380 33 20 chr1 33734740 33734890 -208929463 - MIR SINE MIR -35 227 76 411 227 11 29 chr1 33734918 33735048 -208929305 - L1MCa LINE L1 -1339 6983 1995 349 238 19 29 chr1 33734964 33735069 -208929284 + L1MC4 LINE L1 6614 6717 -1325 * 308 239 29 29 chr1 33735080 33735182 -208929171 - MIR SINE MIR -85 123 21 646 306 36 0 chr1 33735448 33735644 -208928709 - MIR SINE MIR -12 250 48 271 216 225 45 chr1 33735994 33736105 -208928248 - MIR SINE MIR -107 155 25 1835 154 17 100 chr1 33736587 33737066 -208927287 + L1MC3 LINE L1 6863 7301 -484 194 234 103 37 chr1 33738312 33738419 -208925934 - L2 LINE L2 -841 2473 2360 269 273 0 15 chr1 33738867 33738933 -208925420 - MIR SINE MIR -178 84 20 2140 103 0 0 chr1 33738990 33739262 -208925091 - AluSg SINE Alu -38 272 1 2124 116 0 58 chr1 33739758 33740085 -208924268 + AluJb SINE Alu 1 308 -4 2335 98 0 7 chr1 33740090 33740397 -208923956 + AluSx SINE Alu 7 311 -1 472 268 21 21 chr1 33740401 33740543 -208923810 + L1ME LINE L1 5476 5617 -547 316 207 30 118 chr1 33740844 33740979 -208923374 + LTR16C LTR ERVL 369 491 0 422 269 122 21 chr1 33740980 33741218 -208923135 + L1ME LINE L1 5614 5882 -284 2319 98 6 25 chr1 33741226 33741542 -208922811 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr1 33741747 33741769 -208922584 + AT_rich Low_complexity Low_complexity 1 22 0 1026 189 11 11 chr1 33741892 33742072 -208922281 + AluJo SINE Alu 120 299 -13 353 224 206 47 chr1 33742074 33742244 -208922109 - L1ME4a LINE L1 -31 6090 5894 252 240 93 39 chr1 33742266 33742308 -208922045 - L1ME4a LINE L1 -18 6103 6065 2547 80 0 3 chr1 33742308 33742620 -208921733 + AluY SINE Alu 1 311 0 252 240 93 39 chr1 33742620 33742706 -208921647 - L1ME4a LINE L1 -56 6065 5968 2380 109 0 0 chr1 33742787 33743091 -208921262 - AluSx SINE Alu -8 304 1 2474 196 53 2 chr1 33743103 33743653 -208920700 + L1MD3 LINE L1 7411 7988 -7 232 300 11 56 chr1 33743769 33743859 -208920494 - L2 LINE L2 -43 3229 3144 882 181 9 86 chr1 33743957 33744167 -208920186 + AluJb SINE Alu 114 307 -5 333 282 39 23 chr1 33744173 33744432 -208919921 + L1M4 LINE L1 2287 2549 -3597 2294 109 0 0 chr1 33744435 33744728 -208919625 - AluSx SINE Alu -19 293 1 23 0 0 0 chr1 33744729 33744752 -208919601 + AT_rich Low_complexity Low_complexity 1 23 0 752 118 0 0 chr1 33744753 33744855 -208919498 - FRAM SINE Alu -21 155 54 2058 136 0 13 chr1 33745228 33745538 -208918815 - AluJb SINE Alu -6 306 1 180 0 0 0 chr1 33745587 33745607 -208918746 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2451 92 3 6 chr1 33745812 33746126 -208918227 - AluSp SINE Alu 0 313 1 445 265 52 88 chr1 33747255 33747504 -208916849 - MIR SINE MIR 0 262 23 2390 50 7 14 chr1 33747707 33748004 -208916349 - AluY SINE Alu -16 295 1 790 162 0 49 chr1 33749421 33749563 -208914790 - AluJo SINE Alu -176 136 2 1624 167 33 7 chr1 33749567 33749905 -208914448 - AluJb SINE Alu 0 345 1 1166 143 4 35 chr1 33749927 33750185 -208914168 + AluJb SINE Alu 1 307 -5 268 289 0 12 chr1 33750417 33750500 -208913853 - L1ME4a LINE L1 -1930 5878 5797 333 340 30 0 chr1 33751018 33751118 -208913235 + L2 LINE L2 3162 3264 -8 2326 120 0 0 chr1 33751444 33751753 -208912600 - AluSq SINE Alu -4 309 1 23 0 0 0 chr1 33751762 33751785 -208912568 + AT_rich Low_complexity Low_complexity 1 23 0 1119 177 0 0 chr1 33751786 33751961 -208912392 - FAM SINE Alu 0 175 1 2012 224 88 53 chr1 33751962 33752626 -208911727 - L1ME3 LINE L1 -62 6100 5406 1972 164 0 0 chr1 33752626 33752919 -208911434 - AluJb SINE Alu -19 293 1 2012 224 88 53 chr1 33752919 33752992 -208911361 - L1ME3 LINE L1 -756 5406 5337 358 323 84 20 chr1 33753018 33753269 -208911084 + L2 LINE L2 2158 2424 -890 2246 104 0 0 chr1 33753352 33753641 -208910712 + AluSx SINE Alu 1 289 -23 282 56 0 0 chr1 33753641 33753677 -208910676 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 187 301 167 38 chr1 33753687 33753873 -208910480 + L2 LINE L2 2937 3146 -126 604 294 99 0 chr1 33753939 33754191 -208910162 + MLT1K LTR MaLR 77 353 -235 2159 109 3 16 chr1 33754397 33754700 -208909653 - AluSx SINE Alu -13 299 1 835 238 32 0 chr1 33754707 33754896 -208909457 + MIR SINE MIR 12 206 -56 2423 105 0 0 chr1 33755408 33755712 -208908641 + AluSx SINE Alu 1 304 -8 373 326 14 14 chr1 33755725 33755866 -208908487 + MIR SINE MIR 21 161 -101 233 310 9 60 chr1 33755922 33756038 -208908315 + MIR SINE MIR 153 262 0 2446 58 0 7 chr1 33756140 33756480 -208907873 - AluY SINE Alu 0 311 1 28 0 0 0 chr1 33756481 33756509 -208907844 + AT_rich Low_complexity Low_complexity 1 28 0 834 142 0 0 chr1 33757071 33757184 -208907169 + FLAM_C SINE Alu 1 113 -30 1416 150 105 45 chr1 33757192 33757485 -208906868 - AluSx SINE Alu 0 309 1 2393 100 0 0 chr1 33757515 33757824 -208906529 + AluSc SINE Alu 1 309 0 657 206 89 17 chr1 33758187 33758367 -208905986 + LTR33 LTR ERVL 329 521 0 309 226 129 16 chr1 33758514 33758638 -208905715 - MLT1K LTR MaLR -158 430 293 1974 167 0 0 chr1 33758650 33758944 -208905409 + AluJb SINE Alu 3 296 -16 2181 116 20 0 chr1 33758947 33759249 -208905104 + AluSx SINE Alu 1 308 -4 670 292 50 39 chr1 33759288 33759569 -208904784 - MLT1K LTR MaLR -290 298 15 2221 132 3 0 chr1 33759579 33759883 -208904470 - AluSx SINE Alu -7 305 1 184 321 18 0 chr1 33759897 33759953 -208904400 + MIR SINE MIR 74 130 -78 417 287 149 46 chr1 33759969 33760103 -208904250 - MIR SINE MIR 0 262 143 2426 99 0 0 chr1 33760103 33760405 -208903948 + AluSq SINE Alu 1 302 -11 2258 102 10 0 chr1 33760406 33760700 -208903653 + AluSc SINE Alu 1 297 -12 198 0 0 0 chr1 33760700 33760722 -208903631 + (CAAGA)n Simple_repeat Simple_repeat 2 23 0 417 287 149 46 chr1 33760722 33760779 -208903574 - MIR SINE MIR -118 144 48 186 319 58 0 chr1 33760906 33760975 -208903378 - MIR SINE MIR -18 244 172 2327 94 0 10 chr1 33761321 33761629 -208902724 + AluSc SINE Alu 1 305 -4 1732 167 13 42 chr1 33761949 33762114 -208902239 - AluJo SINE Alu -15 297 144 2363 96 0 0 chr1 33762114 33762405 -208901948 - AluSg SINE Alu -17 293 3 1732 167 13 42 chr1 33762405 33762424 -208901929 - AluJo SINE Alu -168 144 1 810 141 0 25 chr1 33762424 33762545 -208901808 - FLAM_C SINE Alu -15 118 1 2108 143 0 9 chr1 33762553 33762868 -208901485 - AluSx SINE Alu 0 312 1 310 328 185 0 chr1 33762887 33763076 -208901277 - MIR SINE MIR 0 262 39 * 1500 276 143 23 chr1 33763068 33763553 -208900800 + L2 LINE L2 2249 2675 -638 1522 176 58 18 chr1 33763553 33763831 -208900522 - AluJb SINE Alu -23 289 1 2319 113 0 0 chr1 33763837 33764139 -208900214 - AluSx SINE Alu -10 302 1 1500 276 143 23 chr1 33764139 33764606 -208899747 + L2 LINE L2 2679 3313 0 210 91 0 0 chr1 33765191 33765224 -208899129 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2024 156 10 0 chr1 33765235 33765542 -208898811 + AluJb SINE Alu 1 310 -2 374 101 29 29 chr1 33765543 33765612 -208898741 - L1MB7 LINE L1 -13 6171 6103 3414 173 70 104 chr1 33765617 33765720 -208898633 - L1M4 LINE L1 -868 5278 5173 1444 107 0 0 chr1 33765720 33765925 -208898428 + L1PA13 LINE L1 5958 6162 -1 2336 118 0 0 chr1 33765929 33766235 -208898118 + AluSx SINE Alu 1 306 -6 3414 173 70 104 chr1 33766235 33766593 -208897760 - L1M4 LINE L1 -976 5170 4801 2290 116 0 7 chr1 33766593 33766903 -208897450 - AluSx SINE Alu -4 308 1 3414 173 70 104 chr1 33766903 33767259 -208897094 - L1M4 LINE L1 -1345 4801 4434 1865 179 0 3 chr1 33767259 33767545 -208896808 + AluJo SINE Alu 1 287 -25 306 0 0 0 chr1 33767545 33767579 -208896774 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1865 179 0 3 chr1 33767579 33767605 -208896748 + AluJo SINE Alu 287 312 0 3414 173 70 104 chr1 33767605 33767652 -208896701 - L1M4 LINE L1 -1712 4434 4387 1600 184 3 32 chr1 33767652 33767817 -208896536 - AluJb SINE Alu -7 305 152 2289 97 14 0 chr1 33767817 33768107 -208896246 - AluY SINE Alu -17 294 1 1600 184 3 32 chr1 33768107 33768250 -208896103 - AluJb SINE Alu -160 152 6 3414 173 70 104 chr1 33768250 33768527 -208895826 - L1M4 LINE L1 -1759 4387 4169 1790 106 0 0 chr1 33768527 33768754 -208895599 - AluSq SINE Alu -86 227 1 526 293 18 54 chr1 33768760 33768808 -208895545 - MIR SINE MIR -68 194 146 2351 108 0 0 chr1 33768808 33769103 -208895250 - AluSg SINE Alu -15 295 1 526 293 18 54 chr1 33769103 33769221 -208895132 - MIR SINE MIR -116 146 34 24 0 0 0 chr1 33769247 33769271 -208895082 + AT_rich Low_complexity Low_complexity 1 24 0 2525 74 0 3 chr1 33769316 33769626 -208894727 + AluY SINE Alu 1 309 -2 2285 112 0 0 chr1 33769889 33770185 -208894168 - AluSq SINE Alu -17 296 1 1631 184 17 10 chr1 33770188 33770482 -208893871 - AluJo SINE Alu -16 296 1 256 73 0 0 chr1 33770510 33770551 -208893802 - HY3 scRNA scRNA -7 94 54 1979 119 18 14 chr1 33770625 33770784 -208893569 - AluSq SINE Alu -16 297 135 2350 93 0 31 chr1 33770784 33771106 -208893247 - AluSx SINE Alu 0 312 1 1979 119 18 14 chr1 33771106 33771223 -208893130 - AluSq SINE Alu -178 135 20 2232 99 26 3 chr1 33771867 33772170 -208892183 + AluSp SINE Alu 2 311 -2 247 263 22 66 chr1 33772270 33772342 -208892011 - L1ME4a LINE L1 0 6121 6056 2206 101 7 3 chr1 33772342 33772638 -208891715 + AluSc SINE Alu 1 297 -12 247 263 22 66 chr1 33772638 33772702 -208891651 - L1ME4a LINE L1 -65 6056 5991 361 174 0 0 chr1 33772756 33772825 -208891528 - LTR30 LTR ERV1 -102 620 552 432 289 75 11 chr1 33773163 33773350 -208891003 - L1MC4a LINE L1 -312 5809 5628 2126 128 7 0 chr1 33773408 33773698 -208890655 + AluSx SINE Alu 1 292 -20 307 294 113 57 chr1 33773850 33774027 -208890326 - MIR SINE MIR -29 233 47 1345 106 0 11 chr1 33774345 33774558 -208889795 + AluSg/x SINE Alu 107 317 0 818 268 96 30 chr1 33774560 33774862 -208889491 - MLT1K LTR MaLR -150 438 117 365 264 35 49 chr1 33775007 33775151 -208889202 - L2 LINE L2 -1 3312 3171 1723 150 8 4 chr1 33775298 33775552 -208888801 + AluJo SINE Alu 37 291 -21 859 245 43 51 chr1 33775639 33775892 -208888461 - MIR SINE MIR 0 262 12 709 232 87 93 chr1 33776100 33776410 -208887943 + MER102a DNA MER1_type 9 316 -14 1779 150 0 70 chr1 33776689 33777002 -208887351 + AluJb SINE Alu 7 297 -15 2223 136 0 0 chr1 33777004 33777314 -208887039 + AluSx SINE Alu 1 310 -2 1996 139 0 0 chr1 33777393 33777667 -208886686 + AluJb SINE Alu 1 274 -38 604 104 8 52 chr1 33777667 33777801 -208886552 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 538 323 134 11 chr1 33777877 33778317 -208886036 - L2 LINE L2 -842 2472 1979 835 107 8 25 chr1 33778323 33778445 -208885908 + FLAM_C SINE Alu 6 125 -18 2395 92 3 0 chr1 33778457 33778761 -208885592 + AluSp SINE Alu 3 307 -6 2216 113 3 0 chr1 33778776 33779069 -208885284 + AluSx SINE Alu 1 294 -18 2529 80 0 6 chr1 33779071 33779383 -208884970 + AluSq SINE Alu 1 310 -3 2294 92 3 0 chr1 33780036 33780351 -208884002 - AluSp SINE Alu 0 316 1 479 260 215 23 chr1 33780371 33780590 -208883763 - MIR SINE MIR 0 262 2 575 163 0 0 chr1 33781477 33781569 -208882784 + AluJ/FLAM SINE Alu 2 93 -219 180 77 0 0 chr1 33781592 33781618 -208882735 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1794 98 0 4 chr1 33781679 33781904 -208882449 + AluSx SINE Alu 1 224 -88 2118 114 0 38 chr1 33781907 33782222 -208882131 + AluSq SINE Alu 1 303 -10 2157 111 0 0 chr1 33782231 33782510 -208881843 + AluSx SINE Alu 1 279 -33 252 0 0 0 chr1 33782510 33782538 -208881815 + (CA)n Simple_repeat Simple_repeat 1 28 0 422 241 132 61 chr1 33782553 33782765 -208881588 - MIR SINE MIR -26 236 10 225 318 64 9 chr1 33782762 33782872 -208881481 - MIR SINE MIR -61 201 86 * 1813 112 0 35 chr1 33783346 33783605 -208880748 - AluSx SINE Alu -53 259 10 207 288 0 17 chr1 33784549 33784608 -208879745 - L3 LINE CR1 -3 1574 1517 2531 50 0 3 chr1 33784835 33785133 -208879220 + AluY SINE Alu 1 297 -14 239 275 38 25 chr1 33785242 33785322 -208879031 - L3 LINE CR1 -74 1503 1423 2347 88 3 38 chr1 33785359 33785679 -208878674 - AluSc SINE Alu 0 309 1 311 0 0 25 chr1 33785785 33785825 -208878528 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 772 234 7 0 chr1 33785827 33785972 -208878381 - FRAM SINE Alu -30 146 1 331 214 194 0 chr1 33786038 33786141 -208878212 + L2 LINE L2 3191 3313 0 533 232 98 68 chr1 33786334 33786497 -208877856 + L1ME4a LINE L1 5634 5791 -330 2296 96 0 10 chr1 33786497 33786799 -208877554 + AluSg SINE Alu 1 299 -11 533 232 98 68 chr1 33786799 33787003 -208877350 + L1ME4a LINE L1 5791 6008 -113 2169 89 11 7 chr1 33787007 33787313 -208877040 + AluSp SINE Alu 1 307 0 237 169 0 0 chr1 33787407 33787454 -208876899 - L1MB7 LINE L1 0 6178 6132 1985 131 28 3 chr1 33787487 33787777 -208876576 - AluSx SINE Alu -15 297 1 2325 110 3 0 chr1 33787819 33788127 -208876226 - AluSg1 SINE Alu 0 309 1 617 136 0 0 chr1 33788146 33788227 -208876126 + AluJ/FLAM SINE Alu 4 84 -228 2092 125 0 7 chr1 33788366 33788663 -208875690 + AluSq SINE Alu 1 295 -18 243 182 23 0 chr1 33788694 33788738 -208875615 + MIR3 SINE MIR 134 178 -30 1043 105 0 0 chr1 33788816 33788949 -208875404 - AluSq/x SINE Alu -179 133 1 646 206 16 167 chr1 33789549 33789806 -208874547 + MIR SINE MIR 10 227 -35 2339 88 3 7 chr1 33789808 33790116 -208874237 + AluSp SINE Alu 1 307 -6 2295 62 3 42 chr1 33790218 33790524 -208873829 + AluY SINE Alu 1 294 -17 2268 81 7 10 chr1 33790702 33791000 -208873353 + AluSx SINE Alu 1 297 -15 715 241 85 30 chr1 33791009 33791208 -208873145 + MIR SINE MIR 40 249 -13 268 289 0 12 chr1 33792226 33792309 -208872044 + L1MC/D LINE L1 5797 5878 -1930 1166 143 4 35 chr1 33792541 33792799 -208871554 - AluJb SINE Alu -5 307 1 1625 167 33 7 chr1 33792821 33793154 -208871199 + AluJb SINE Alu 1 340 0 790 162 0 49 chr1 33793158 33793300 -208871053 + AluJo SINE Alu 2 136 -176 2530 44 0 7 chr1 33794717 33795012 -208869341 + AluY SINE Alu 1 293 -18 2287 88 7 3 chr1 33795036 33795331 -208869022 + AluSq SINE Alu 1 296 -17 1371 165 0 48 chr1 33795352 33795601 -208868752 - AluJo SINE Alu -75 237 1 1006 174 12 0 chr1 33795856 33796017 -208868336 + AluSg/x SINE Alu 135 297 -15 2254 120 0 22 chr1 33796074 33796391 -208867962 + AluSx SINE Alu 2 311 -1 1360 206 91 0 chr1 33796486 33796772 -208867581 + AluJo SINE Alu 1 312 0 190 318 121 15 chr1 33797926 33798058 -208866295 + L2 LINE L2 3168 3313 0 458 254 36 9 chr1 33798734 33798844 -208865509 + MER81 DNA DNA 1 113 -1 181 267 22 22 chr1 33799061 33799106 -208865247 + MIR SINE MIR 33 77 -185 270 0 0 0 chr1 33799128 33799158 -208865195 + (T)n Simple_repeat Simple_repeat 1 30 0 2457 77 0 0 chr1 33799221 33799519 -208864834 + AluY SINE Alu 1 298 -13 2422 77 3 0 chr1 33801540 33801838 -208862515 - AluSp SINE Alu -14 299 1 2156 135 0 0 chr1 33801838 33802133 -208862220 - AluSx SINE Alu -16 296 1 532 221 326 11 chr1 33802177 33802367 -208861986 - MIR SINE MIR 0 262 13 2372 68 0 19 chr1 33802397 33802708 -208861645 + AluY SINE Alu 1 305 -6 2034 91 42 3 chr1 33802837 33803124 -208861229 + AluSq SINE Alu 1 298 -15 360 167 72 1 chr1 33803328 33803403 -208860950 + AluJ/FRAM SINE Alu 224 295 -7 201 229 300 0 chr1 33803485 33803555 -208860798 - L2 LINE L2 -12 3301 3211 2125 113 20 3 chr1 33803815 33804108 -208860245 - AluSg SINE Alu -12 298 1 629 143 0 0 chr1 33804123 33804214 -208860139 + AluSg/x SINE Alu 205 295 -15 301 272 0 25 chr1 33804251 33804332 -208860021 + MIR SINE MIR 78 156 -106 542 184 0 110 chr1 33804376 33804434 -208859919 + MIR SINE MIR 14 50 -212 1671 187 27 10 chr1 33804434 33804734 -208859619 + AluJo SINE Alu 1 305 -7 542 184 0 110 chr1 33804734 33804811 -208859542 + MIR SINE MIR 50 134 -128 187 292 21 0 chr1 33804899 33804947 -208859406 + L2 LINE L2 3250 3298 -15 2344 90 3 3 chr1 33805428 33805729 -208858624 - AluY SINE Alu -10 301 1 1086 92 7 0 chr1 33805729 33805871 -208858482 - AluY SINE Alu -20 291 149 2327 94 10 0 chr1 33806068 33806367 -208857986 - AluSp SINE Alu -11 302 1 950 105 0 0 chr1 33806367 33806500 -208857853 - AluSg/x SINE Alu -6 306 174 844 179 61 30 chr1 33806500 33806581 -208857772 - MER33 DNA MER1_type -88 74 1 1533 143 12 104 chr1 33806581 33806916 -208857437 - AluJb SINE Alu -8 304 1 2003 167 0 0 chr1 33806920 33807225 -208857128 - AluJb SINE Alu -7 305 1 844 179 61 30 chr1 33807225 33807374 -208856979 - MER33 DNA MER1_type -167 4294967291 1 2451 236 80 50 chr1 33807704 33807943 -208856410 + HAL1 LINE L1 744 974 -1533 2518 78 0 0 chr1 33807943 33808239 -208856114 - AluSg SINE Alu -14 296 1 2451 236 80 50 chr1 33808239 33808844 -208855509 + HAL1 LINE L1 974 1633 -874 2500 85 7 0 chr1 33808844 33809149 -208855204 + AluSg SINE Alu 1 307 -3 2451 236 80 50 chr1 33809149 33809434 -208854919 + HAL1 LINE L1 1633 1908 -599 210 37 0 0 chr1 33809696 33809723 -208854630 + (TG)n Simple_repeat Simple_repeat 2 28 0 464 186 0 0 chr1 33809724 33809794 -208854559 - AluSg/x SINE Alu -29 280 211 721 193 8 0 chr1 33809796 33809915 -208854438 + AluSc SINE Alu 131 250 -59 355 118 0 0 chr1 33809916 33809967 -208854386 - AluSp/q SINE Alu -96 207 157 2391 103 0 3 chr1 33809988 33810300 -208854053 + AluY SINE Alu 1 311 0 2002 105 6 32 chr1 33810328 33810643 -208853710 + AluSp SINE Alu 1 307 -6 1667 94 7 51 chr1 33810665 33810941 -208853412 + AluY SINE Alu 18 281 -30 2336 116 0 3 chr1 33810979 33811290 -208853063 + AluSx SINE Alu 1 310 -2 280 264 52 45 chr1 33811454 33811609 -208852744 + HAL1b LINE L1 746 901 -447 2382 72 0 33 chr1 33811946 33812252 -208852101 - AluY SINE Alu -14 297 2 230 258 90 22 chr1 33812275 33812364 -208851989 + L1ME4a LINE L1 5554 5648 -473 1169 60 0 0 chr1 33812448 33812582 -208851771 + AluY SINE Alu 1 134 -177 2060 110 53 0 chr1 33812582 33812863 -208851490 + AluSx SINE Alu 2 297 -15 499 323 71 46 chr1 33812867 33812938 -208851415 + L1ME4a LINE L1 5751 5819 -302 1830 175 0 31 chr1 33812938 33813152 -208851201 + 7SLRNA srpRNA srpRNA 1 203 -117 2662 68 0 0 chr1 33813152 33813462 -208850891 + AluY SINE Alu 1 310 -1 1830 175 0 31 chr1 33813462 33813573 -208850780 + 7SLRNA srpRNA srpRNA 203 316 -4 499 323 71 46 chr1 33813573 33813694 -208850659 + L1ME4a LINE L1 5819 5935 -186 2167 117 17 0 chr1 33813694 33813992 -208850361 + AluSx SINE Alu 1 303 -9 499 323 71 46 chr1 33813992 33814138 -208850215 + L1ME4a LINE L1 5935 6094 -27 1609 184 10 7 chr1 33814138 33814432 -208849921 - AluJb SINE Alu -17 295 1 499 323 71 46 chr1 33814432 33814456 -208849897 + L1ME4a LINE L1 6094 6116 -5 239 311 0 19 chr1 33814789 33814892 -208849461 + (CA)n Simple_repeat Simple_repeat 2 102 0 228 284 14 0 chr1 33814953 33815027 -208849326 + GA-rich Low_complexity Low_complexity 1 75 0 2365 90 3 0 chr1 33816225 33816537 -208847816 + AluSq SINE Alu 1 313 0 408 40 0 0 chr1 33816747 33816797 -208847556 + (CA)n Simple_repeat Simple_repeat 2 51 0 459 297 24 12 chr1 33817188 33817353 -208847000 - MIR SINE MIR -50 212 46 376 299 107 44 chr1 33817807 33818209 -208846144 + L2 LINE L2 2808 3312 -1 862 115 0 8 chr1 33818588 33818718 -208845635 + FLAM_C SINE Alu 1 129 -14 237 354 57 25 chr1 33820080 33820238 -208844115 + L2 LINE L2 2446 2608 -706 253 235 86 25 chr1 33820433 33820514 -208843839 + L2 LINE L2 3228 3313 0 1298 76 333 168 chr1 33820531 33820798 -208843555 - L2 LINE L2 -103 3210 2988 1924 108 13 44 chr1 33820798 33820969 -208843384 - AluSx SINE Alu -7 305 130 2207 105 0 6 chr1 33820969 33821283 -208843070 - AluSq SINE Alu -1 312 1 1978 111 0 4 chr1 33821288 33821595 -208842758 - AluSc SINE Alu 0 306 1 1924 108 13 44 chr1 33821595 33821731 -208842622 - AluSx SINE Alu -186 126 1 1298 76 333 168 chr1 33821731 33822074 -208842279 - L2 LINE L2 -325 2988 2703 1518 160 6 42 chr1 33822074 33822387 -208841966 + AluJb SINE Alu 11 312 0 1298 76 333 168 chr1 33822387 33822498 -208841855 - L2 LINE L2 -610 2703 2402 858 80 7 29 chr1 33822519 33822657 -208841696 - AluY SINE Alu -13 298 164 220 268 49 0 chr1 33875456 33875538 -208788815 + MIR3 SINE MIR 94 179 -29 2165 114 0 17 chr1 33876991 33877288 -208787065 + AluSx SINE Alu 1 292 -20 2394 98 0 9 chr1 33878586 33878721 -208785632 + AluSx SINE Alu 1 136 -176 2306 102 7 0 chr1 33878721 33879024 -208785329 + AluSp SINE Alu 1 305 -8 2394 98 0 9 chr1 33879024 33879203 -208785150 + AluSx SINE Alu 136 312 0 266 229 181 4 chr1 33879218 33879327 -208785026 + MIR SINE MIR 35 167 -85 2028 107 34 21 chr1 33879390 33879681 -208784672 - AluJo SINE Alu -17 295 1 578 85 0 0 chr1 33880288 33880370 -208783983 - L1P LINE L1 -1022 5124 5043 26523 134 10 62 chr1 33880380 33885325 -208779028 + L1P LINE L1 377 5065 -1081 767 243 110 0 chr1 33885322 33885614 -208778739 - L1M4 LINE L1 -1088 5058 4735 * 330 216 23 0 chr1 33885749 33885837 -208778516 - L1M4 LINE L1 -1640 4506 4417 787 248 124 0 chr1 33885937 33886179 -208778174 - Charlie2b DNA MER1_type -1630 1152 881 645 287 55 38 chr1 33886210 33886447 -208777906 - MIR SINE MIR -2 260 20 1620 177 47 44 chr1 33886455 33886862 -208777491 - L1MA9 LINE L1 -34 6278 5871 543 210 37 2 chr1 33886857 33886992 -208777361 + L1MA9 LINE L1 5736 5875 -281 * 651 289 36 0 chr1 33887097 33887322 -208777031 - MIR SINE MIR -26 236 4 1939 250 65 32 chr1 33887430 33888087 -208776266 - L1ME1 LINE L1 0 6166 5488 1150 200 8 47 chr1 33888200 33888435 -208775918 + MSTD LTR MaLR 171 396 0 1034 222 59 5 chr1 33888435 33888655 -208775698 + MLT1A1 LTR MaLR 134 365 0 2199 256 99 55 chr1 33888684 33890384 -208773969 + L1M4 LINE L1 3671 5473 -701 1136 214 46 41 chr1 33890561 33890930 -208773423 + L1MA7 LINE L1 5921 6291 0 24 0 0 0 chr1 33890930 33890954 -208773399 + AT_rich Low_complexity Low_complexity 1 24 0 16048 143 27 68 chr1 33891672 33895037 -208769316 - L1P LINE L1 -2330 3816 591 1829 217 6 6 chr1 33895045 33895404 -208768949 - MLT2D LTR ERVL -55 359 1 2456 87 0 0 chr1 33895654 33895953 -208768400 - AluSg SINE Alu -11 299 1 295 238 89 10 chr1 33896140 33896241 -208768112 - MIR SINE MIR -62 146 38 1298 151 86 62 chr1 33896334 33896625 -208767728 - AluSx SINE Alu -14 298 1 2514 49 3 0 chr1 33896630 33896915 -208767438 - AluSx SINE Alu -26 286 1 431 297 66 19 chr1 33897152 33897364 -208766989 - HAL1b LINE L1 -561 787 566 226 302 81 0 chr1 33897585 33897671 -208766682 + MLT1I LTR MaLR 42 134 -275 283 143 0 86 chr1 33898139 33898183 -208766170 - MLT2C2 LTR ERVL 0 464 427 336 24 0 0 chr1 33898183 33898224 -208766129 + (TG)n Simple_repeat Simple_repeat 1 41 0 283 143 0 86 chr1 33898224 33898249 -208766104 - MLT2C2 LTR ERVL -37 427 401 6896 65 5 2 chr1 33898258 33899636 -208764717 - L1PA7 LINE L1 -4 6150 4773 616 214 36 91 chr1 33899639 33899970 -208764383 + L1ME LINE L1 4140 4452 -1694 2336 144 65 5 chr1 33900314 33900716 -208763637 + MSTA LTR MaLR 1 426 -2 9536 173 19 5 chr1 33900718 33902341 -208762012 + MSTA-int LTR MaLR 1 1645 -6 682 110 31 1 chr1 33902347 33902457 -208761896 + MSTA LTR MaLR 1 113 -313 250 214 0 0 chr1 33902467 33902523 -208761830 + L1ME LINE L1 5382 5437 -684 407 106 234 0 chr1 33902569 33902663 -208761690 + MSTA LTR MaLR 114 229 -199 265 298 106 0 chr1 33903046 33903197 -208761156 + MIR3 SINE MIR 22 188 -20 2601 174 43 6 chr1 33904407 33904873 -208759480 - MER52A LTR ERV1 0 1755 1273 361 221 183 10 chr1 33904982 33905086 -208759267 - MSTA LTR MaLR -306 122 1 10169 43 1 1 chr1 33905125 33907129 -208757224 - L1PA4 LINE L1 -1 6154 4149 723 143 18 0 chr1 33907432 33907544 -208756809 + FLAM_A SINE Alu 13 126 -16 186 281 98 0 chr1 33907574 33907656 -208756697 + MIR3 SINE MIR 67 156 -52 753 128 0 0 chr1 33907876 33907985 -208756368 - FLAM_C SINE Alu -33 110 2 2033 99 88 0 chr1 33908013 33908286 -208756067 + AluSx SINE Alu 1 297 -15 222 118 0 0 chr1 33908896 33908930 -208755423 + (TTCTCC)n Simple_repeat Simple_repeat 4 37 0 639 182 99 0 chr1 33908930 33909051 -208755302 - FLAM_C SINE Alu 0 133 1 1472 134 0 49 chr1 33909054 33909300 -208755053 - AluJb SINE Alu -26 286 53 2294 78 0 32 chr1 33909300 33909608 -208754745 + AluY SINE Alu 1 299 -12 373 180 0 0 chr1 33909609 33909670 -208754683 - AluJb SINE Alu -237 65 5 1603 116 46 0 chr1 33909774 33910015 -208754338 + AluSx SINE Alu 59 310 -2 205 224 102 31 chr1 33910636 33910734 -208753619 - MIR SINE MIR -69 193 89 662 254 37 26 chr1 33911069 33911258 -208753095 + MLT1L LTR MaLR 103 293 -322 253 208 0 0 chr1 33911362 33911415 -208752938 - MIR SINE MIR 0 262 210 4061 128 68 78 chr1 33911418 33911587 -208752766 - Tigger1 DNA MER2_type -1 2417 2248 207 0 0 0 chr1 33911587 33911610 -208752743 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4061 128 68 78 chr1 33911610 33911627 -208752726 - Tigger1 DNA MER2_type -170 2248 2232 2094 97 0 15 chr1 33911627 33911896 -208752457 - AluSg SINE Alu -45 265 1 4061 128 68 78 chr1 33911896 33912211 -208752142 - Tigger1 DNA MER2_type -186 2232 1916 1835 156 10 10 chr1 33912211 33912499 -208751854 + AluJo SINE Alu 2 289 -23 4061 128 68 78 chr1 33912499 33912525 -208751828 - Tigger1 DNA MER2_type -502 1916 1891 246 62 0 0 chr1 33912525 33912557 -208751796 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1762 148 53 7 chr1 33912557 33912840 -208751513 - AluJb SINE Alu -16 296 1 4061 128 68 78 chr1 33912840 33913158 -208751195 - Tigger1 DNA MER2_type -525 1893 1576 406 107 0 204 chr1 33913157 33913260 -208751093 - Tigger1 DNA MER2_type -959 1459 1378 * 2165 113 3 3 chr1 33913260 33913553 -208750800 + AluSq SINE Alu 1 293 -20 198 0 0 0 chr1 33913553 33913575 -208750778 + (TA)n Simple_repeat Simple_repeat 2 23 0 2793 98 29 21 chr1 33913575 33913954 -208750399 - Tigger1 DNA MER2_type -1161 1257 882 2035 132 3 0 chr1 33913954 33914241 -208750112 - AluSx SINE Alu -24 288 1 2359 69 0 14 chr1 33914245 33914536 -208749817 - AluY SINE Alu -20 291 5 1424 209 21 3 chr1 33914539 33914826 -208749527 - AluJo SINE Alu -20 292 1 2793 98 29 21 chr1 33914826 33914855 -208749498 - Tigger1 DNA MER2_type -1539 879 837 2196 111 7 0 chr1 33914856 33915145 -208749208 - AluSx SINE Alu -21 291 1 732 123 0 0 chr1 33915169 33915275 -208749078 - Tigger1 DNA MER2_type -1662 756 651 862 71 143 0 chr1 33915275 33915401 -208748952 - AluY SINE Alu 0 311 168 3491 129 51 18 chr1 33915409 33915478 -208748875 - Tigger1 DNA MER2_type -1762 656 591 2058 119 42 0 chr1 33915478 33915764 -208748589 + AluSp SINE Alu 1 298 -15 3491 129 51 18 chr1 33915764 33916266 -208748087 - Tigger1 DNA MER2_type -1827 591 66 2444 81 0 3 chr1 33916266 33916573 -208747780 - AluSg SINE Alu -4 306 1 21 0 0 0 chr1 33916580 33916601 -208747752 + AT_rich Low_complexity Low_complexity 1 21 0 770 178 0 0 chr1 33916609 33916738 -208747615 + FLAM_C SINE Alu 1 129 -4 245 282 24 12 chr1 33916823 33916908 -208747445 - MIR SINE MIR -115 147 62 2327 91 3 10 chr1 33917018 33917325 -208747028 - AluSp SINE Alu -8 305 1 325 185 0 0 chr1 33917439 33917504 -208746849 - Alu SINE Alu -1 300 236 511 234 105 12 chr1 33917548 33917614 -208746739 + MIR SINE MIR 74 132 -130 1739 181 13 10 chr1 33917614 33917918 -208746435 + AluJo SINE Alu 1 305 -7 511 234 105 12 chr1 33917918 33918022 -208746331 + MIR SINE MIR 132 260 -2 234 87 0 0 chr1 33918087 33918133 -208746220 + LTR66 LTR ERVL 394 439 -171 2316 97 3 0 chr1 33918134 33918432 -208745921 - AluSx SINE Alu -13 299 1 496 216 8 64 chr1 33918553 33918678 -208745675 - L2 LINE L2 -9 3304 3187 462 239 124 104 chr1 33918686 33918845 -208745508 - Charlie8 DNA MER1_type -53 288 121 2254 99 24 0 chr1 33918845 33919137 -208745216 - AluSg SINE Alu -11 299 1 462 239 124 104 chr1 33919137 33919236 -208745117 - Charlie8 DNA MER1_type -220 121 25 36 44 0 15 chr1 33919312 33919349 -208745004 + AT_rich Low_complexity Low_complexity 1 38 -29 2179 113 0 10 chr1 33919349 33919649 -208744704 - AluSx SINE Alu -15 297 1 36 44 0 15 chr1 33919649 33919679 -208744674 + AT_rich Low_complexity Low_complexity 38 67 0 1992 93 0 15 chr1 33919679 33919948 -208744405 - AluSx SINE Alu -23 289 25 1984 129 23 26 chr1 33919970 33920273 -208744080 - AluSx SINE Alu -10 302 1 361 297 116 51 chr1 33920481 33920792 -208743561 - L2 LINE L2 -954 2360 2071 2220 110 0 0 chr1 33920792 33921084 -208743269 + AluSx SINE Alu 1 292 -20 2385 92 0 13 chr1 33921093 33921409 -208742944 + AluSq SINE Alu 1 312 -1 361 297 116 51 chr1 33921409 33921604 -208742749 - L2 LINE L2 -1250 2064 1803 732 159 0 38 chr1 33921604 33921736 -208742617 + FLAM_C SINE Alu 1 127 -6 361 297 116 51 chr1 33921736 33921770 -208742583 - L2 LINE L2 -1511 1803 1773 2349 102 0 3 chr1 33921775 33922078 -208742275 + AluSp SINE Alu 1 302 -11 401 310 8 70 chr1 33922082 33922324 -208742029 - L2 LINE L2 -662 2652 2426 756 183 86 20 chr1 33922362 33922559 -208741794 - MER106B DNA MER1_type -2 1057 848 2003 157 3 0 chr1 33922560 33922860 -208741493 + AluJb SINE Alu 1 301 -11 2411 82 0 0 chr1 33922866 33923157 -208741196 + AluSc SINE Alu 12 302 -7 1522 174 19 0 chr1 33923228 33923487 -208740866 + AluJb SINE Alu 33 296 -16 855 123 0 0 chr1 33923495 33923609 -208740744 + AluJo/FLAM SINE Alu 1 114 -198 2051 127 3 3 chr1 33923609 33923908 -208740445 - AluSx SINE Alu -13 299 1 2071 127 3 3 chr1 33923947 33924246 -208740107 - AluSx SINE Alu -13 299 1 826 125 153 23 chr1 33924248 33924464 -208739889 - MER106B DNA MER1_type -262 797 554 1699 172 150 14 chr1 33924469 33924823 -208739530 - MER106B DNA MER1_type -657 402 1 897 191 39 121 chr1 33924823 33925127 -208739226 - MER46C DNA MER2_type -13 325 52 793 169 0 22 chr1 33925127 33925287 -208739066 - FLAM_C SINE Alu 0 133 1 897 191 39 121 chr1 33925287 33925334 -208739019 - MER46C DNA MER2_type -286 52 3 2242 107 3 3 chr1 33925485 33925783 -208738570 - AluSq SINE Alu -12 301 4 216 322 161 8 chr1 33926242 33926360 -208737993 - MIR SINE MIR -57 151 16 186 43 0 0 chr1 33927070 33927093 -208737260 + (CA)n Simple_repeat Simple_repeat 2 24 0 511 130 20 0 chr1 33927458 33927558 -208736795 + (TA)n Simple_repeat Simple_repeat 2 103 0 251 125 42 0 chr1 33928210 33928258 -208736095 + CT-rich Low_complexity Low_complexity 3 52 0 1447 139 24 32 chr1 33928258 33928509 -208735844 - AluJb SINE Alu -5 307 59 1412 127 0 42 chr1 33928642 33928878 -208735475 - AluJo SINE Alu 0 312 87 213 179 239 0 chr1 33929085 33929152 -208735201 + MIR SINE MIR 65 147 -115 216 0 0 0 chr1 33929324 33929348 -208735005 + (T)n Simple_repeat Simple_repeat 1 24 0 1898 128 84 0 chr1 33929605 33929879 -208734474 + AluSx SINE Alu 1 297 -15 789 191 11 49 chr1 33929964 33930113 -208734240 + L1M4 LINE L1 4907 5046 -1100 2255 102 3 0 chr1 33930113 33930407 -208733946 + AluSq SINE Alu 1 295 -18 789 191 11 49 chr1 33930407 33930468 -208733885 + L1M4 LINE L1 5046 5108 -1038 929 118 0 0 chr1 33930468 33930587 -208733766 + FLAM_C SINE Alu 1 119 -24 27 49 0 0 chr1 33930587 33930628 -208733725 + AT_rich Low_complexity Low_complexity 1 41 0 371 217 9 0 chr1 33930652 33930758 -208733595 + (TA)n Simple_repeat Simple_repeat 2 108 0 195 129 0 0 chr1 33930786 33930817 -208733536 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 414 234 0 3 chr1 33930818 33930907 -208733446 + AluJ/FLAM SINE Alu 1 68 -234 332 179 119 0 chr1 33930941 33931008 -208733345 - tRNA-Asp-GAC tRNA tRNA 0 75 1 2178 117 0 0 chr1 33931035 33931372 -208732981 - AluSx SINE Alu 0 337 1 1623 154 46 0 chr1 33931398 33931678 -208732675 - AluJb SINE Alu 0 302 11 2501 52 0 0 chr1 33931723 33932014 -208732339 + AluY SINE Alu 1 291 -20 680 170 0 0 chr1 33932023 33932135 -208732218 - FLAM_C SINE Alu -30 113 2 2110 143 0 0 chr1 33932163 33932457 -208731896 + AluJb SINE Alu 1 294 -18 717 139 10 178 chr1 33932460 33932500 -208731853 + L1M4c LINE L1 1551 1596 -4788 1441 199 26 36 chr1 33932500 33932807 -208731546 + AluJo SINE Alu 1 304 -8 717 139 10 178 chr1 33932807 33932864 -208731489 + L1M4c LINE L1 1596 1661 -4723 1478 106 5 0 chr1 33932864 33933062 -208731291 + AluSq SINE Alu 5 203 -110 2032 96 16 61 chr1 33933062 33933374 -208730979 + AluSx SINE Alu 1 298 -14 717 139 10 178 chr1 33933374 33933469 -208730884 + L1M4c LINE L1 1660 1711 -4673 1874 154 14 0 chr1 33933469 33933755 -208730598 + AluJb SINE Alu 9 298 -14 717 139 10 178 chr1 33933755 33933767 -208730586 + L1M4c LINE L1 1711 1723 -4661 * 1119 173 36 9 chr1 33933757 33933982 -208730371 + L1MB7 LINE L1 5809 6039 -145 2037 146 0 37 chr1 33933996 33934187 -208730166 - AluSx SINE Alu -1 311 135 2137 107 4 0 chr1 33934187 33934468 -208729885 - AluSp SINE Alu -31 282 1 2037 146 0 37 chr1 33934468 33934599 -208729754 - AluSx SINE Alu -177 135 1 289 143 0 0 chr1 33934600 33934649 -208729704 - FLAM_A SINE Alu 0 133 85 1103 241 0 0 chr1 33934649 33934869 -208729484 - AluJo SINE Alu -92 220 1 626 180 40 40 chr1 33934876 33935026 -208729327 + L1MB8 LINE L1 6024 6173 -5 236 264 90 112 chr1 33935144 33935276 -208729077 + Charlie8 DNA MER1_type 1 130 -211 2067 112 21 11 chr1 33935276 33935562 -208728791 - AluSq SINE Alu -11 302 14 236 264 90 112 chr1 33935562 33935607 -208728746 + Charlie8 DNA MER1_type 130 174 -167 223 328 114 30 chr1 33935633 33935834 -208728519 + L3 LINE CR1 1351 1568 -9 1738 173 17 3 chr1 33936279 33936574 -208727779 - AluJb SINE Alu -13 299 1 2272 108 3 0 chr1 33936954 33937251 -208727102 + AluSq SINE Alu 1 298 -15 2532 62 7 0 chr1 33937364 33937668 -208726685 + AluSp SINE Alu 1 306 -7 344 319 92 26 chr1 33937721 33937950 -208726403 - L2 LINE L2 -1158 2156 1913 205 253 4 0 chr1 33938417 33938500 -208725853 - L2 LINE L2 -309 3004 2921 487 217 123 66 chr1 33938608 33939064 -208725289 + L1MC5 LINE L1 7311 7940 -21 253 230 112 81 chr1 33939050 33939216 -208725137 + L1MC4 LINE L1 7533 7692 -350 * 2302 90 0 3 chr1 33939216 33939506 -208724847 + AluSg SINE Alu 13 301 -9 253 230 112 81 chr1 33939506 33939685 -208724668 + L1MC4 LINE L1 7692 7998 -44 2410 106 3 0 chr1 33940487 33940798 -208723555 - AluSx SINE Alu 0 312 1 488 233 15 41 chr1 33940833 33940970 -208723383 - LOR1-int LTR ERV1 -2429 4169 3835 1778 160 91 36 chr1 33940970 33941088 -208723265 - MLT1B LTR MaLR 0 390 280 2105 102 41 3 chr1 33941088 33941383 -208722970 + AluSg SINE Alu 1 306 -4 1778 160 91 36 chr1 33941383 33941627 -208722726 - MLT1B LTR MaLR -110 280 8 1559 141 0 12 chr1 33942212 33942454 -208721899 - AluJb SINE Alu -60 252 14 1481 126 56 0 chr1 33942488 33942703 -208721650 + AluSg/x SINE Alu 85 311 -1 1669 164 122 3 chr1 33942703 33943056 -208721297 - L1MB4 LINE L1 -4 6412 6018 2688 165 101 4 chr1 33943057 33943553 -208720800 - MER44D DNA MER2_type 0 605 7 819 212 104 0 chr1 33943559 33943752 -208720601 - L1MB4 LINE L1 -534 5876 5664 1925 149 17 0 chr1 33943758 33944047 -208720306 - AluSx SINE Alu -18 294 1 2378 85 0 23 chr1 33944053 33944360 -208719993 - AluY SINE Alu -11 300 1 2162 130 3 0 chr1 33944426 33944726 -208719627 - AluSx SINE Alu -11 301 1 854 231 0 20 chr1 33944781 33944976 -208719377 - L1MB4 LINE L1 -1251 5131 4941 * 1406 231 74 45 chr1 33944975 33945526 -208718827 - L1MB4 LINE L1 -3264 3118 2552 2586 142 164 92 chr1 33945526 33945956 -208718397 - L1MB4 LINE L1 -4143 2241 1844 1782 132 36 11 chr1 33945956 33946236 -208718117 - AluJb SINE Alu -5 307 21 2586 142 164 92 chr1 33946236 33946388 -208717965 - L1MB4 LINE L1 -4540 1844 1704 1509 192 7 21 chr1 33946388 33946699 -208717654 - AluJo SINE Alu 0 307 1 2586 142 164 92 chr1 33946699 33946749 -208717604 - L1MB4 LINE L1 -4680 1704 1659 1996 154 0 19 chr1 33946749 33947067 -208717286 - AluJb SINE Alu 0 312 1 2586 142 164 92 chr1 33947067 33947206 -208717147 - L1MB4 LINE L1 -4725 1659 1411 1117 166 17 0 chr1 33947207 33947388 -208716965 - AluSg/x SINE Alu -13 297 114 748 117 0 33 chr1 33947388 33947508 -208716845 - AluSx SINE Alu -159 153 38 1849 211 28 61 chr1 33947515 33947659 -208716694 - L1MB4 LINE L1 -4986 1398 1251 2336 74 30 7 chr1 33947659 33947958 -208716395 - AluSg SINE Alu -4 306 1 725 133 16 31 chr1 33947965 33948093 -208716260 - FLAM_C SINE Alu -7 126 1 1849 211 28 61 chr1 33948093 33948485 -208715868 - L1MB4 LINE L1 -5139 1245 872 682 193 0 43 chr1 33948487 33948627 -208715726 - AluJo SINE Alu -178 134 1 865 255 104 73 chr1 33948696 33949220 -208715133 - L1MEc LINE L1 -4538 1858 1309 2298 112 0 6 chr1 33949220 33949534 -208714819 - AluSx SINE Alu 0 312 1 865 255 104 73 chr1 33949534 33949656 -208714697 - L1MEc LINE L1 -5087 1309 1192 271 198 62 73 chr1 33949629 33949725 -208714628 - L1MEc LINE L1 -5486 910 816 * 2294 96 0 3 chr1 33949726 33950027 -208714326 - AluSc SINE Alu -9 300 1 906 168 0 42 chr1 33950028 33950195 -208714158 - FRAM SINE Alu -17 159 1 631 288 114 38 chr1 33950203 33950841 -208713512 - L1MEc LINE L1 -5579 817 131 254 237 171 83 chr1 33950890 33951153 -208713200 + L1M4 LINE L1 2319 2624 -3522 1649 177 17 10 chr1 33951153 33951453 -208712900 + AluJo SINE Alu 5 306 -6 254 237 171 83 chr1 33951453 33951552 -208712801 + L1M4 LINE L1 2624 2713 -3433 2526 74 0 0 chr1 33951665 33951974 -208712379 + AluY SINE Alu 1 309 -2 1217 84 36 6 chr1 33951974 33952140 -208712213 + AluSg/x SINE Alu 134 304 -8 2428 92 0 16 chr1 33952385 33952701 -208711652 + AluSq SINE Alu 1 311 -2 279 256 64 10 chr1 33952707 33952849 -208711504 + L1ME LINE L1 5328 5474 -690 2287 112 0 0 chr1 33952966 33953260 -208711093 + AluSx SINE Alu 1 294 -18 250 167 0 0 chr1 33953260 33953296 -208711057 + Charlie1 DNA MER1_type 1 36 -2725 526 270 7 27 chr1 33953325 33953473 -208710880 - MIR SINE MIR -114 148 4 2413 91 3 10 chr1 33953931 33954240 -208710113 + AluSq SINE Alu 5 311 -2 2244 109 0 34 chr1 33954412 33954732 -208709621 - AluSg SINE Alu -1 309 1 1695 122 3 99 chr1 33954805 33955158 -208709195 - AluJb SINE Alu 0 323 1 561 184 0 0 chr1 33955198 33955296 -208709057 - AluSg/x SINE Alu -6 304 207 2318 171 75 12 chr1 33955328 33955824 -208708529 - Tigger7 DNA MER2_type 0 2491 1 462 305 71 13 chr1 33956572 33956996 -208707357 + L2 LINE L2 2800 3312 -1 2085 98 17 3 chr1 33957495 33957792 -208706561 - L1MA1 LINE L1 0 6302 6002 244 196 0 0 chr1 33958012 33958058 -208706295 + MIR SINE MIR 76 121 -141 362 265 43 43 chr1 33958108 33958270 -208706083 - MIR3 SINE MIR -25 183 22 449 202 45 0 chr1 33958669 33958758 -208705595 + MER21B LTR ERV1 1 93 -770 625 236 135 0 chr1 33958758 33958936 -208705417 + MER21B LTR ERV1 591 792 -71 2410 82 0 10 chr1 33959119 33959422 -208704931 + AluSg SINE Alu 2 301 -9 1805 129 42 21 chr1 33959976 33960263 -208704090 + AluJb SINE Alu 1 293 -19 2401 95 0 0 chr1 33961656 33961952 -208702401 + AluSg SINE Alu 1 296 -14 2542 35 0 0 chr1 33961952 33962232 -208702121 + AluY SINE Alu 27 308 -3 4668 155 63 32 chr1 33963021 33963999 -208700354 - L1MB3 LINE L1 -15 6168 5153 1693 162 0 46 chr1 33964005 33964307 -208700046 - AluJb SINE Alu -22 290 3 736 160 30 15 chr1 33964319 33964450 -208699903 - FLAM_A SINE Alu 0 133 1 1755 144 3 46 chr1 33964508 33964814 -208699539 + AluJb SINE Alu 1 293 -19 711 180 0 16 chr1 33964707 33964817 -208699536 + AluJb SINE Alu 187 307 0 2278 104 0 0 chr1 33964817 33965140 -208699213 + AluSx SINE Alu 1 323 0 2358 83 0 0 chr1 33965446 33965747 -208698606 + AluSg SINE Alu 1 301 -9 2071 79 7 31 chr1 33965749 33966064 -208698289 + AluY SINE Alu 1 308 0 1195 161 66 0 chr1 33966772 33966983 -208697370 + AluJb SINE Alu 86 310 -2 1474 201 10 17 chr1 33966990 33967279 -208697074 + AluJo SINE Alu 6 292 -20 1552 107 5 5 chr1 33967365 33967581 -208696772 - AluSx SINE Alu -86 226 11 1901 116 21 14 chr1 33968194 33968479 -208695874 + AluJo SINE Alu 9 295 -17 2313 77 0 43 chr1 33968536 33968861 -208695492 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 33968870 33968892 -208695461 + AT_rich Low_complexity Low_complexity 1 22 0 212 286 95 9 chr1 33969532 33969637 -208694716 - MIR3 SINE MIR -90 118 5 189 121 0 0 chr1 33970324 33970357 -208693996 + (T)n Simple_repeat Simple_repeat 1 33 0 195 42 0 0 chr1 33971076 33971100 -208693253 + (TTC)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr1 33972275 33972296 -208692057 + (A)n Simple_repeat Simple_repeat 1 21 0 2330 73 3 3 chr1 33974604 33974906 -208689447 + AluSg SINE Alu 1 302 -8 1752 127 34 31 chr1 33974917 33975208 -208689145 + AluSx SINE Alu 1 292 -20 502 262 76 34 chr1 33975804 33976041 -208688312 - L1ME1 LINE L1 -5 6161 5915 2226 88 10 7 chr1 33976086 33976382 -208687971 - AluSq SINE Alu -16 297 1 288 292 94 0 chr1 33976443 33976539 -208687814 + Charlie8 DNA MER1_type 1 105 -2312 1552 186 14 3 chr1 33976601 33976891 -208687462 + AluJo SINE Alu 1 293 -19 589 158 175 0 chr1 33977329 33977443 -208686910 - MER46A DNA MER2_type -1 235 102 590 244 120 19 chr1 33978095 33978304 -208686049 + MIR SINE MIR 33 262 0 372 295 49 8 chr1 33978309 33978431 -208685922 - MIR SINE MIR -62 146 20 381 299 52 15 chr1 33980923 33981057 -208683296 + MIR3 SINE MIR 20 158 -50 424 275 106 73 chr1 33981141 33981359 -208682994 - Charlie8 DNA MER1_type -2190 227 3 2233 93 3 3 chr1 33981480 33981781 -208682572 + AluSq SINE Alu 1 301 -12 2084 113 0 3 chr1 33981898 33982189 -208682164 + AluSg SINE Alu 12 301 -9 2139 81 0 3 chr1 33982242 33982525 -208681828 - AluY SINE Alu -29 282 1 2339 62 3 13 chr1 33982525 33982831 -208681522 - AluY SINE Alu -8 303 1 2140 85 13 19 chr1 33982831 33983138 -208681215 - AluSc SINE Alu -4 305 1 218 368 21 0 chr1 33983390 33983485 -208680868 - L2 LINE L2 -2 3270 3174 254 243 155 34 chr1 33984154 33984302 -208680051 - L1MC5 LINE L1 -520 7441 7276 309 82 0 0 chr1 33984458 33984507 -208679846 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2153 65 0 27 chr1 33984507 33984801 -208679552 - AluY SINE Alu -25 286 1 2123 108 0 3 chr1 33984803 33985099 -208679254 - AluSc SINE Alu -14 295 1 247 215 46 0 chr1 33985164 33985229 -208679124 + MIR SINE MIR 124 191 -71 653 286 342 6 chr1 33985257 33985898 -208678455 - L2 LINE L2 -1655 1659 804 1060 189 96 0 chr1 33985900 33986027 -208678326 + MER33 DNA MER1_type 1 114 -2471 1573 101 83 29 chr1 33986027 33986303 -208678050 - AluSx SINE Alu -21 291 1 1060 189 96 0 chr1 33986303 33986466 -208677887 + MER33 DNA MER1_type 114 319 -5 533 313 48 15 chr1 33986470 33986742 -208677611 - L2 LINE L2 -2510 804 524 294 111 123 0 chr1 33987372 33987453 -208676900 - Charlie5 DNA MER1_type -67 2545 2455 1930 149 3 0 chr1 33987458 33987754 -208676599 + AluSx SINE Alu 1 297 -15 334 202 219 44 chr1 33988062 33988176 -208676177 - L1ME4a LINE L1 -148 5973 5840 525 289 75 30 chr1 33988187 33988492 -208675861 - L1ME4a LINE L1 -319 5802 5484 2117 101 7 23 chr1 33988632 33988939 -208675414 - AluSg SINE Alu -5 305 4 686 262 196 14 chr1 33989550 33989836 -208674517 - MER46C DNA MER2_type 0 338 1 2301 96 0 3 chr1 33989912 33990215 -208674138 + AluSx SINE Alu 1 302 -10 194 276 0 46 chr1 33990845 33990932 -208673421 + L2 LINE L2 2503 2585 -729 1987 106 3 72 chr1 33992596 33992628 -208671725 - AluSx SINE Alu -4 308 275 288 0 0 0 chr1 33992628 33992660 -208671693 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1987 106 3 72 chr1 33992660 33992958 -208671395 - AluSx SINE Alu -37 275 1 199 324 29 0 chr1 33993344 33993412 -208670941 - MIR SINE MIR -173 89 20 216 318 106 8 chr1 33993659 33993791 -208670562 - MIR SINE MIR -48 214 70 348 111 0 0 chr1 33995057 33995111 -208669242 + (T)n Simple_repeat Simple_repeat 1 54 0 262 198 128 23 chr1 33999256 33999342 -208665011 + MIR SINE MIR 132 226 -36 202 146 24 0 chr1 33999427 33999468 -208664885 + CT-rich Low_complexity Low_complexity 1 42 0 1970 137 10 0 chr1 34001954 34002247 -208662106 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr1 34002247 34002270 -208662083 + AT_rich Low_complexity Low_complexity 1 23 0 1949 129 3 3 chr1 34002276 34002579 -208661774 + AluSx SINE Alu 1 303 -9 258 346 29 0 chr1 34002652 34002756 -208661597 - MIR SINE MIR -84 124 18 260 268 49 0 chr1 34005883 34005965 -208658388 + MIR3 SINE MIR 94 179 -29 2061 114 0 17 chr1 34007418 34007715 -208656638 + AluSx SINE Alu 1 292 -20 2289 98 0 9 chr1 34009012 34009147 -208655206 + AluSx SINE Alu 1 136 -176 2200 102 7 0 chr1 34009147 34009450 -208654903 + AluSp SINE Alu 1 305 -8 2289 98 0 9 chr1 34009450 34009629 -208654724 + AluSx SINE Alu 136 312 0 266 221 214 2 chr1 34009644 34009753 -208654600 + MIR SINE MIR 35 167 -85 1934 107 34 21 chr1 34009816 34010107 -208654246 - AluJo SINE Alu -17 295 1 2191 94 0 23 chr1 34011990 34012297 -208652056 - AluSg SINE Alu -10 300 1 682 127 9 27 chr1 34012300 34012410 -208651943 - AluJo/FLAM SINE Alu -181 131 24 2145 84 13 45 chr1 34012438 34012605 -208651748 - AluSp SINE Alu -13 300 146 2480 56 0 7 chr1 34012605 34012911 -208651442 - AluY SINE Alu -7 304 1 2145 84 13 45 chr1 34012911 34013053 -208651300 - AluSp SINE Alu -167 146 1 302 261 28 103 chr1 34013054 34013133 -208651220 - MIR SINE MIR -62 146 111 2144 111 0 10 chr1 34013133 34013439 -208650914 + AluSx SINE Alu 5 307 -5 302 261 28 103 chr1 34013439 34013513 -208650840 - MIR SINE MIR -97 111 33 198 169 153 0 chr1 34015812 34015871 -208648482 - MIR SINE MIR -93 169 102 302 283 262 5 chr1 34016804 34016995 -208647358 - MIR SINE MIR -4 258 19 2463 76 0 10 chr1 34017242 34017544 -208646809 + AluSq SINE Alu 1 299 -14 361 66 82 0 chr1 34017558 34017619 -208646734 + L1MB1 LINE L1 6111 6176 -13 2270 102 0 10 chr1 34017622 34017757 -208646596 + AluSp SINE Alu 1 136 -177 2401 108 0 0 chr1 34017757 34018064 -208646289 + AluSx SINE Alu 1 307 -5 2270 102 0 10 chr1 34018064 34018231 -208646122 + AluSp SINE Alu 136 300 -13 1640 172 69 0 chr1 34018483 34018774 -208645579 - AluJb SINE Alu -1 311 1 288 300 138 19 chr1 34018917 34019077 -208645276 + MIR SINE MIR 84 262 0 2273 118 0 7 chr1 34019272 34019578 -208644775 - AluSx SINE Alu -8 304 1 362 256 231 19 chr1 34019795 34019955 -208644398 - MIR SINE MIR -16 246 53 217 333 74 7 chr1 34020492 34020627 -208643726 + L2 LINE L2 2972 3115 -157 690 286 75 4 chr1 34020698 34020925 -208643428 - MIR SINE MIR 0 262 20 1468 128 86 4 chr1 34021916 34022150 -208642203 + AluJo SINE Alu 1 253 -59 2444 83 0 3 chr1 34022384 34022686 -208641667 - AluSx SINE Alu -11 301 1 459 271 33 8 chr1 34022690 34022812 -208641541 - MIR SINE MIR -65 143 19 2234 106 6 34 chr1 34023762 34023940 -208640413 - AluSx SINE Alu 0 312 145 2349 102 0 7 chr1 34023940 34024235 -208640118 - AluSx SINE Alu -19 293 1 2234 106 6 34 chr1 34024235 34024377 -208639976 - AluSx SINE Alu -167 145 1 234 283 91 10 chr1 34024386 34024485 -208639868 - L2 LINE L2 -32 3240 3134 2035 107 50 0 chr1 34024562 34024842 -208639511 + AluSq SINE Alu 1 294 -19 2552 50 10 7 chr1 34024842 34025145 -208639208 + AluY SINE Alu 1 304 -7 1857 105 0 12 chr1 34025669 34025917 -208638436 - AluSx SINE Alu -13 299 55 1987 97 0 26 chr1 34025927 34026195 -208638158 - AluSx SINE Alu -5 307 47 1067 133 19 0 chr1 34026243 34026401 -208637952 + FRAM SINE Alu 11 171 -5 345 270 40 66 chr1 34026434 34026586 -208637767 + MIR SINE MIR 51 198 -64 1821 168 10 7 chr1 34026595 34026886 -208637467 + AluJo SINE Alu 1 292 -20 285 332 189 29 chr1 34026933 34027213 -208637140 - L2 LINE L2 -31 3241 2917 2193 72 55 14 chr1 34028358 34028649 -208635704 - AluY SINE Alu -8 303 1 2308 116 0 0 chr1 34028649 34028952 -208635401 - AluSx SINE Alu -9 303 1 417 248 38 45 chr1 34028960 34029117 -208635236 + MIR SINE MIR 107 262 0 872 120 0 0 chr1 34029171 34029288 -208635065 - FLAM_C SINE Alu -26 117 1 1013 164 38 6 chr1 34029332 34029515 -208634838 - AluJb SINE Alu -2 310 122 761 194 6 0 chr1 34029696 34029861 -208634492 + CT-rich Low_complexity Low_complexity 3 168 0 395 315 61 20 chr1 34029948 34030145 -208634208 - L3 LINE CR1 -11 1566 1362 1075 91 0 0 chr1 34030484 34030616 -208633737 + AluSq/x SINE Alu 1 132 -180 2285 104 7 0 chr1 34030619 34030918 -208633435 + AluSp SINE Alu 1 301 -12 2268 73 0 0 chr1 34030918 34031190 -208633163 + AluY SINE Alu 1 272 -39 42 36 0 0 chr1 34031190 34031246 -208633107 + AT_rich Low_complexity Low_complexity 1 56 0 267 224 149 45 chr1 34031354 34031488 -208632865 + L2 LINE L2 2904 3051 -262 705 164 168 77 chr1 34031488 34031708 -208632645 - AluJo SINE Alu -9 303 64 960 138 0 0 chr1 34031711 34031849 -208632504 + AluJb SINE Alu 160 297 -15 359 109 0 0 chr1 34031858 34031913 -208632440 + HY3 scRNA scRNA 46 100 -1 278 262 117 39 chr1 34032206 34032309 -208632044 - L2 LINE L2 -3 3310 3200 2397 81 10 0 chr1 34033043 34033341 -208631012 - AluSp SINE Alu -8 305 5 815 224 6 0 chr1 34033367 34033528 -208630825 - FAM SINE Alu -13 162 1 470 263 143 0 chr1 34033561 34033694 -208630659 + MIR SINE MIR 71 222 -40 1919 162 0 29 chr1 34033697 34034012 -208630341 + AluSq SINE Alu 1 306 -7 303 117 19 39 chr1 34034012 34034115 -208630238 + (TA)n Simple_repeat Simple_repeat 2 102 0 2056 111 15 7 chr1 34034192 34034490 -208629863 + AluSx SINE Alu 9 308 0 2287 116 3 0 chr1 34035054 34035355 -208628998 - AluSg SINE Alu -6 304 3 2019 137 0 7 chr1 34035503 34035842 -208628511 - AluSg SINE Alu 0 337 1 348 316 94 16 chr1 34035847 34036103 -208628250 + Charlie8 DNA MER1_type 57 204 -2213 2264 108 0 23 chr1 34036277 34036583 -208627770 - AluSg SINE Alu -11 299 1 1205 166 0 20 chr1 34036876 34037075 -208627278 - AluJb SINE Alu 0 312 118 1771 157 12 49 chr1 34037082 34037406 -208626947 - AluJb SINE Alu 0 312 1 261 154 19 19 chr1 34037410 34037462 -208626891 - MIR SINE MIR -61 147 96 2357 97 7 3 chr1 34037613 34037922 -208626431 + AluSg SINE Alu 1 310 0 456 178 164 34 chr1 34039578 34039724 -208624629 - MER117 DNA MER1_type -8 189 25 1975 128 55 0 chr1 34039726 34040016 -208624337 + AluSx SINE Alu 1 306 -6 2250 117 7 0 chr1 34040380 34040678 -208623675 + AluSp SINE Alu 2 301 -12 267 31 0 0 chr1 34042151 34042183 -208622170 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2066 111 3 35 chr1 34042183 34042334 -208622019 - AluSx SINE Alu -33 279 140 2133 108 0 7 chr1 34042334 34042622 -208621731 - AluSc SINE Alu -23 286 1 2066 111 3 35 chr1 34042622 34042758 -208621595 - AluSx SINE Alu -172 140 1 270 328 160 0 chr1 34042768 34042899 -208621454 - MIR SINE MIR -105 157 6 2202 114 0 23 chr1 34043184 34043491 -208620862 + AluSx SINE Alu 1 300 -12 2234 84 35 0 chr1 34044504 34044788 -208619565 - AluSc SINE Alu -15 294 1 249 312 43 0 chr1 34045021 34045114 -208619239 + L2 LINE L2 1846 1942 -1372 182 270 48 16 chr1 34045114 34045177 -208619176 + L2 LINE L2 2732 2796 -518 1957 203 118 0 chr1 34045234 34045667 -208618686 + MER44D DNA MER2_type 12 495 -210 2251 95 0 14 chr1 34045668 34045964 -208618389 - AluY SINE Alu -19 292 1 2253 84 28 3 chr1 34045973 34046260 -208618093 - AluSq SINE Alu -19 294 1 1159 175 65 104 chr1 34046261 34046569 -208617784 - AluJo SINE Alu -8 304 9 358 69 0 0 chr1 34046579 34046637 -208617716 - AluSp/q SINE Alu 0 303 246 246 302 13 31 chr1 34046813 34046972 -208617381 + (TCTCTG)n Simple_repeat Simple_repeat 3 158 0 * 398 357 11 14 chr1 34046922 34047162 -208617191 + CT-rich Low_complexity Low_complexity 1 239 0 248 352 7 14 chr1 34047186 34047331 -208617022 + CT-rich Low_complexity Low_complexity 1 144 0 185 156 0 44 chr1 34047357 34047402 -208616951 + CT-rich Low_complexity Low_complexity 2 44 0 397 261 26 9 chr1 34048565 34048680 -208615673 - MIR3 SINE MIR -38 170 54 372 337 64 0 chr1 34048780 34048952 -208615401 - MIR SINE MIR -6 256 74 2221 96 13 3 chr1 34049165 34049467 -208614886 - AluSp SINE Alu -8 305 1 374 164 14 14 chr1 34049477 34049550 -208614803 - MER20 DNA MER1_type -3 216 144 278 67 0 22 chr1 34049575 34049620 -208614733 + AluSp/q SINE Alu 254 297 -6 605 118 11 0 chr1 34049620 34049713 -208614640 - MER20 DNA MER1_type -84 135 42 259 211 19 0 chr1 34049889 34049941 -208614412 - MIR SINE MIR 0 262 210 2062 149 0 0 chr1 34049976 34050277 -208614076 + AluJb SINE Alu 1 301 -11 330 322 63 35 chr1 34050375 34050518 -208613835 + MIR3 SINE MIR 3 149 -59 2193 137 0 3 chr1 34050519 34050832 -208613521 + AluSx SINE Alu 1 312 0 222 37 0 0 chr1 34050990 34051017 -208613336 + (TA)n Simple_repeat Simple_repeat 1 27 0 2482 70 0 10 chr1 34051018 34051316 -208613037 - AluY SINE Alu -16 295 1 22 56 0 0 chr1 34051317 34051353 -208613000 + AT_rich Low_complexity Low_complexity 1 36 0 214 42 42 62 chr1 34051353 34051401 -208612952 + (TAAAAA)n Simple_repeat Simple_repeat 3 49 0 1894 110 0 0 chr1 34051405 34051650 -208612703 + AluSq SINE Alu 1 245 -68 1353 115 0 6 chr1 34051650 34051833 -208612520 - AluSg SINE Alu -128 182 1 524 244 114 28 chr1 34052088 34052189 -208612164 - Charlie8 DNA MER1_type -65 265 174 1629 148 10 77 chr1 34052189 34052500 -208611853 - AluJo SINE Alu -22 290 1 524 244 114 28 chr1 34052500 34052574 -208611779 - Charlie8 DNA MER1_type -156 174 75 309 140 0 0 chr1 34052574 34052624 -208611729 + L2 LINE L2 2666 2715 -599 1911 166 0 3 chr1 34052624 34052925 -208611428 + AluJb SINE Alu 1 300 -12 2325 59 0 4 chr1 34052927 34053200 -208611153 + AluY SINE Alu 1 272 -39 42 36 0 0 chr1 34053200 34053256 -208611097 + AT_rich Low_complexity Low_complexity 1 56 0 267 224 149 45 chr1 34053362 34053496 -208610857 + L2 LINE L2 2904 3051 -262 705 164 168 77 chr1 34053496 34053716 -208610637 - AluJo SINE Alu -9 303 64 960 138 0 0 chr1 34053719 34053857 -208610496 + AluJb SINE Alu 160 297 -15 359 109 0 0 chr1 34053866 34053921 -208610432 + HY3 scRNA scRNA 46 100 -1 278 262 117 39 chr1 34054214 34054317 -208610036 - L2 LINE L2 -3 3310 3200 2397 81 10 0 chr1 34055051 34055349 -208609004 - AluSp SINE Alu -8 305 5 815 224 6 0 chr1 34055375 34055536 -208608817 - FAM SINE Alu -13 162 1 470 263 143 0 chr1 34055569 34055702 -208608651 + MIR SINE MIR 71 222 -40 1919 162 0 29 chr1 34055705 34056020 -208608333 + AluSq SINE Alu 1 306 -7 303 117 19 39 chr1 34056020 34056123 -208608230 + (TA)n Simple_repeat Simple_repeat 2 102 0 2056 111 15 7 chr1 34056200 34056498 -208607855 + AluSx SINE Alu 9 308 0 2330 109 3 0 chr1 34057062 34057365 -208606988 - AluSg SINE Alu -6 304 1 2019 137 0 7 chr1 34057512 34057851 -208606502 - AluSg SINE Alu 0 337 1 348 316 94 16 chr1 34057856 34058112 -208606241 + Charlie8 DNA MER1_type 57 215 -2202 2264 108 0 23 chr1 34058286 34058592 -208605761 - AluSg SINE Alu -11 299 1 1205 166 0 20 chr1 34058885 34059084 -208605269 - AluJb SINE Alu 0 312 118 1771 157 12 49 chr1 34059091 34059415 -208604938 - AluJb SINE Alu 0 312 1 261 154 19 19 chr1 34059419 34059471 -208604882 - MIR SINE MIR -61 147 96 2357 97 7 3 chr1 34059622 34059931 -208604422 + AluSg SINE Alu 1 310 0 465 167 133 94 chr1 34061588 34061736 -208602617 - MER117 DNA MER1_type -8 189 31 2071 122 21 0 chr1 34061736 34062024 -208602329 + AluSx SINE Alu 1 294 -18 465 167 133 94 chr1 34062024 34062055 -208602298 - MER117 DNA MER1_type -166 31 3 2036 150 0 10 chr1 34062185 34062479 -208601874 - AluJo SINE Alu -19 293 3 543 264 104 6 chr1 34062483 34062665 -208601688 - MIR SINE MIR -38 224 25 292 246 62 54 chr1 34062712 34062842 -208601511 - MIR3 SINE MIR -69 139 9 2309 85 10 20 chr1 34063141 34063447 -208600906 - AluSg SINE Alu -7 303 1 225 301 23 0 chr1 34065730 34065827 -208598526 + MIR SINE MIR 39 138 -70 367 125 0 23 chr1 34066943 34067031 -208597322 + (CA)n Simple_repeat Simple_repeat 1 86 0 200 222 9 0 chr1 34067065 34067173 -208597180 + (CA)n Simple_repeat Simple_repeat 1 109 0 185 208 14 0 chr1 34067215 34067287 -208597066 + (CA)n Simple_repeat Simple_repeat 1 73 0 398 191 11 27 chr1 34067346 34067529 -208596824 + (CA)n Simple_repeat Simple_repeat 1 180 0 294 147 0 0 chr1 34067552 34067620 -208596733 + (CA)n Simple_repeat Simple_repeat 1 68 0 323 293 6 64 chr1 34067637 34067721 -208596632 + L2 LINE L2 2888 2975 -297 801 49 0 0 chr1 34067721 34067823 -208596530 + (TC)n Simple_repeat Simple_repeat 2 103 0 1564 169 60 0 chr1 34067823 34068090 -208596263 - AluJo SINE Alu -29 283 1 323 293 6 64 chr1 34068090 34068161 -208596192 + L2 LINE L2 2973 3035 -237 1594 117 0 0 chr1 34068169 34068374 -208595979 - AluSx SINE Alu -87 225 21 372 199 107 69 chr1 34068654 34068707 -208595646 - MIR3 SINE MIR -12 196 147 1470 211 48 3 chr1 34068707 34069001 -208595352 - AluJo SINE Alu -5 307 1 372 199 107 69 chr1 34069001 34069090 -208595263 - MIR3 SINE MIR -61 147 57 2029 159 0 7 chr1 34069093 34069394 -208594959 + AluJo SINE Alu 1 299 -13 2348 107 0 13 chr1 34069394 34069703 -208594650 + AluSc SINE Alu 1 305 -4 2362 78 0 0 chr1 34069705 34069987 -208594366 + AluSg SINE Alu 3 284 -26 1326 151 86 62 chr1 34069992 34070283 -208594070 + AluSx SINE Alu 1 298 -14 333 277 84 13 chr1 34070360 34070550 -208593803 + MIR SINE MIR 21 222 -40 2319 102 0 0 chr1 34070664 34070958 -208593395 + AluSg SINE Alu 1 294 -16 2086 128 0 3 chr1 34070959 34071241 -208593112 - AluSx SINE Alu -31 281 1 1006 116 116 70 chr1 34071255 34071454 -208592899 - AluY SINE Alu -1 310 103 9957 87 1 56 chr1 34071555 34073116 -208591237 - L1P LINE L1 -4657 1489 14 431 239 45 11 chr1 34073113 34073253 -208591100 - L1M4c LINE L1 -4738 1646 1533 * 4514 166 18 23 chr1 34073274 34074370 -208589983 - L1PA16 LINE L1 -11 6155 5068 779 247 8 4 chr1 34074373 34074616 -208589737 - L1M4c LINE L1 -3156 3226 2983 1440 246 42 8 chr1 34074626 34075146 -208589207 - L1M4c LINE L1 -4846 1538 1001 1011 271 41 35 chr1 34075125 34075355 -208588998 - L1M4 LINE L1 -942 5440 5213 * 1313 244 101 19 chr1 34075355 34075630 -208588723 - MLT1D LTR MaLR 0 505 254 381 22 0 0 chr1 34075630 34075676 -208588677 + (CA)n Simple_repeat Simple_repeat 2 47 0 1313 244 101 19 chr1 34075676 34075867 -208588486 - MLT1D LTR MaLR -251 254 1 1011 271 41 35 chr1 34075867 34076149 -208588204 - L1M4 LINE L1 -1169 5213 4925 1163 315 56 7 chr1 34076869 34077298 -208587055 - LTR33 LTR ERVL -71 450 1 440 356 0 12 chr1 34077358 34077518 -208586835 - MER52A LTR ERV1 0 1755 1598 465 265 14 96 chr1 34077540 34077759 -208586594 - MER52A LTR ERV1 -303 1452 1252 947 234 175 107 chr1 34077761 34078406 -208585947 - MER52A LTR ERV1 -407 1348 660 250 298 156 28 chr1 34078964 34079105 -208585248 - MIR3 SINE MIR -20 188 30 291 292 83 21 chr1 34079518 34079614 -208584739 + L2 LINE L2 2685 2786 -528 33 56 0 0 chr1 34079754 34079808 -208584545 + AT_rich Low_complexity Low_complexity 1 54 0 2692 102 5 11 chr1 34080226 34080600 -208583753 + THE1C LTR MaLR 3 374 -1 2227 157 11 13 chr1 34080642 34081018 -208583335 + THE1C LTR MaLR 1 375 0 8629 132 69 48 chr1 34081018 34082561 -208581792 + THE1C-int LTR MaLR 1 1576 -4 1451 165 100 16 chr1 34082565 34082886 -208581467 + THE1C LTR MaLR 1 348 -27 6123 210 40 15 chr1 34083124 34083950 -208580403 + L1 LINE L1 3495 4299 -1847 2416 89 0 0 chr1 34083950 34084241 -208580112 - AluSc SINE Alu -18 291 1 6123 210 40 15 chr1 34084241 34084311 -208580042 + L1 LINE L1 4299 4366 -1780 246 81 0 0 chr1 34084311 34084348 -208580005 + (CA)n Simple_repeat Simple_repeat 1 37 0 6123 210 40 15 chr1 34084348 34085054 -208579299 + L1 LINE L1 4366 5138 -1008 382 324 22 15 chr1 34085507 34085643 -208578710 - MIR SINE MIR -120 142 6 1128 214 80 68 chr1 34086091 34086531 -208577822 - LTR56 LTR ERV1 0 445 1 233 323 31 0 chr1 34086628 34086693 -208577660 - MIR SINE MIR -111 97 31 414 221 130 8 chr1 34087023 34087154 -208577199 - MER69 DNA AcHobo 0 2526 2380 268 261 0 29 chr1 34087281 34087350 -208577003 - MER69 DNA AcHobo -1159 67 1 287 316 115 37 chr1 34087574 34087818 -208576535 + L2 LINE L2 2498 2760 -554 662 129 0 0 chr1 34087919 34088020 -208576333 - LTR12 LTR ERV1 -133 581 481 393 246 17 0 chr1 34088021 34088139 -208576214 - LTR30 LTR ERV1 -79 643 524 494 187 77 0 chr1 34088303 34088394 -208575959 - AluJ/FLAM SINE Alu -213 99 2 309 300 138 19 chr1 34088538 34088698 -208575655 + MIR SINE MIR 84 262 0 2261 118 0 7 chr1 34088893 34089199 -208575154 - AluSx SINE Alu -8 304 1 398 264 218 17 chr1 34089416 34089590 -208574763 - MIR SINE MIR -16 246 38 243 333 74 7 chr1 34090113 34090248 -208574105 + L2 LINE L2 2972 3115 -157 737 286 75 4 chr1 34090319 34090546 -208573807 - MIR SINE MIR 0 262 20 1450 128 86 4 chr1 34091537 34091771 -208572582 + AluJo SINE Alu 1 253 -59 2433 83 0 3 chr1 34092005 34092307 -208572046 - AluSx SINE Alu -11 301 1 489 271 33 8 chr1 34092311 34092433 -208571920 - MIR SINE MIR -65 143 19 2315 97 7 10 chr1 34093385 34093694 -208570659 - AluSg SINE Alu -2 308 1 439 125 0 0 chr1 34093695 34093759 -208570594 + AluSg/x SINE Alu 185 248 -62 1095 143 27 80 chr1 34093759 34093983 -208570370 + AluJb SINE Alu 85 296 -16 31 0 0 0 chr1 34093983 34094014 -208570339 + AT_rich Low_complexity Low_complexity 1 31 0 1859 171 4 0 chr1 34094135 34094448 -208569905 + AluJb SINE Alu 1 314 0 283 183 134 37 chr1 34094458 34094540 -208569813 + U3 snRNA snRNA 1 90 -127 700 161 81 16 chr1 34094622 34094746 -208569607 + AluJo/FLAM SINE Alu 2 133 -169 1654 109 0 5 chr1 34094746 34094956 -208569397 + AluSc SINE Alu 1 209 -100 291 77 0 0 chr1 34094956 34095046 -208569307 + AluSc SINE Alu 242 331 0 1011 128 11 91 chr1 34095206 34095393 -208568960 - AluJ SINE Alu -4 308 137 306 50 0 0 chr1 34095393 34095433 -208568920 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2109 114 3 17 chr1 34095433 34095723 -208568630 - AluSx SINE Alu -26 286 1 297 75 0 0 chr1 34095731 34095771 -208568582 + (T)n Simple_repeat Simple_repeat 1 40 0 884 144 7 55 chr1 34095795 34095941 -208568412 - AluJ SINE Alu -169 143 5 1387 160 0 5 chr1 34096024 34096236 -208568117 - AluJb SINE Alu -17 295 85 2274 77 0 74 chr1 34096237 34096561 -208567792 - AluSg SINE Alu -10 300 1 931 154 6 74 chr1 34096564 34096739 -208567614 - FRAM SINE Alu -3 163 1 2025 162 0 0 chr1 34096758 34097060 -208567293 - AluJo SINE Alu -10 302 1 1931 158 0 19 chr1 34097508 34097824 -208566529 + AluJb SINE Alu 3 312 0 451 240 6 101 chr1 34097829 34098008 -208566345 + MIR SINE MIR 72 233 -29 304 176 59 12 chr1 34098089 34098174 -208566179 + MER113 DNA MER1_type? 108 196 -325 282 240 0 40 chr1 34098373 34098448 -208565905 + AluJo/FLAM SINE Alu 49 120 -182 2151 90 0 8 chr1 34098451 34098719 -208565634 - AluSq SINE Alu -19 294 29 1370 113 6 0 chr1 34098727 34098934 -208565419 + AluSg/x SINE Alu 104 311 0 822 169 0 0 chr1 34098952 34099076 -208565277 - FLAM_C SINE Alu -9 124 1 992 194 6 6 chr1 34099090 34099265 -208565088 + FRAM SINE Alu 1 170 -6 301 263 26 0 chr1 34099265 34099341 -208565012 - L2 LINE L2 -20 3293 3216 718 273 32 28 chr1 34099699 34099915 -208564438 - MIR SINE MIR -38 224 8 811 132 0 76 chr1 34100051 34100195 -208564158 - FLAM_C SINE Alu 0 133 1 2369 93 3 6 chr1 34100250 34100563 -208563790 + AluSp SINE Alu 1 312 -1 635 143 0 0 chr1 34100567 34100658 -208563695 + AluSg/x SINE Alu 125 215 -95 1234 120 0 6 chr1 34100658 34100825 -208563528 - AluSx SINE Alu -146 166 1 574 160 11 0 chr1 34100828 34100922 -208563431 - FRAM SINE Alu -19 157 63 273 29 0 0 chr1 34101186 34101220 -208563133 + (TG)n Simple_repeat Simple_repeat 1 34 0 1636 86 14 5 chr1 34101480 34101690 -208562663 + AluSc SINE Alu 1 212 -97 2015 129 17 0 chr1 34101691 34101978 -208562375 - AluSq SINE Alu -21 292 1 297 142 30 67 chr1 34101980 34102046 -208562307 - MIR SINE MIR -62 146 89 432 37 0 0 chr1 34103118 34103172 -208561181 + (TC)n Simple_repeat Simple_repeat 1 54 0 335 303 7 42 chr1 34103287 34103429 -208560924 + MIR3 SINE MIR 60 196 -12 186 304 58 0 chr1 34105265 34105334 -208559019 - MIR SINE MIR -109 153 81 2327 97 10 0 chr1 34105341 34105641 -208558712 + AluSq SINE Alu 10 312 -1 1426 153 0 139 chr1 34105652 34106005 -208558348 + AluSx SINE Alu 1 304 -8 309 274 19 47 chr1 34106856 34106962 -208557391 + MER5B DNA MER1_type 27 129 -49 356 218 196 15 chr1 34108147 34108280 -208556073 + MIR3 SINE MIR 30 186 -22 2200 120 7 0 chr1 34108405 34108704 -208555649 + AluY SINE Alu 1 301 -10 306 73 0 0 chr1 34108722 34108763 -208555590 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 913 165 51 76 chr1 34108768 34108817 -208555536 - L1ME3A LINE L1 -16 6154 6105 2141 104 7 0 chr1 34108817 34109124 -208555229 + AluSq SINE Alu 6 314 0 913 165 51 76 chr1 34109124 34109310 -208555043 - L1ME3A LINE L1 -65 6105 5924 918 146 44 6 chr1 34109310 34109468 -208554885 - MER5A DNA MER1_type -2 187 24 1107 183 9 43 chr1 34109485 34109715 -208554638 - AluJo SINE Alu -16 296 75 2414 53 0 11 chr1 34109715 34109999 -208554354 + AluY SINE Alu 1 281 -30 1212 160 45 80 chr1 34109999 34110311 -208554042 + AluJb SINE Alu 2 302 -10 2183 96 33 3 chr1 34110364 34110667 -208553686 - AluSx SINE Alu 0 312 1 2422 89 0 3 chr1 34110669 34110973 -208553380 - AluY SINE Alu -8 303 1 2105 127 10 3 chr1 34110975 34111275 -208553078 - AluJb SINE Alu -5 307 6 2274 123 3 0 chr1 34111304 34111614 -208552739 - AluSx SINE Alu -1 311 1 2188 141 0 0 chr1 34111614 34111917 -208552436 - AluSx SINE Alu -8 304 1 243 0 0 0 chr1 34111952 34111979 -208552374 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 748 138 0 43 chr1 34111982 34112120 -208552233 + FLAM_C SINE Alu 1 132 -11 527 77 0 13 chr1 34112572 34112650 -208551703 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 2173 96 20 0 chr1 34112650 34112951 -208551402 - AluSq SINE Alu -6 307 1 1092 75 0 8 chr1 34112954 34113088 -208551265 - AluSq/x SINE Alu -179 133 1 202 233 0 0 chr1 34113197 34113240 -208551113 - MIR SINE MIR -101 161 119 256 273 157 16 chr1 34115337 34115458 -208548895 - L3 LINE CR1 -108 1469 1332 182 229 82 16 chr1 34115608 34115669 -208548684 + L2 LINE L2 3184 3248 -24 294 353 96 6 chr1 34115763 34115919 -208548434 - L2 LINE L2 -254 3059 2890 673 140 88 0 chr1 34115921 34116035 -208548318 - Tigger7 DNA MER2_type 0 2587 2464 1221 108 0 6 chr1 34116035 34116242 -208548111 - AluSg/x SINE Alu 0 326 121 186 43 0 0 chr1 34116246 34116269 -208548084 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 1079 173 0 0 chr1 34116277 34116439 -208547914 - AluSg/x SINE Alu -21 289 128 1935 168 3 13 chr1 34116449 34116622 -208547731 - AluSx SINE Alu -6 306 136 2164 135 0 22 chr1 34116622 34116941 -208547412 - AluSx SINE Alu 0 312 1 1935 168 3 13 chr1 34116941 34117076 -208547277 - AluSx SINE Alu -176 136 1 377 96 169 0 chr1 34117076 34117159 -208547194 - Tigger7 DNA MER2_type -121 2466 2370 453 173 25 0 chr1 34117212 34117293 -208547060 + AluJ/FLAM SINE Alu 2 84 -228 309 274 19 47 chr1 34117874 34117980 -208546373 + MER5B DNA MER1_type 27 129 -49 356 218 196 15 chr1 34119165 34119298 -208545055 + MIR3 SINE MIR 30 186 -22 2200 120 7 0 chr1 34119423 34119722 -208544631 + AluY SINE Alu 1 301 -10 306 73 0 0 chr1 34119740 34119781 -208544572 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 915 151 53 80 chr1 34119786 34119835 -208544518 - L1ME3A LINE L1 -16 6154 6105 2141 104 7 0 chr1 34119835 34120142 -208544211 + AluSq SINE Alu 6 314 0 915 151 53 80 chr1 34120142 34120316 -208544037 - L1ME3A LINE L1 -65 6105 5936 928 145 44 6 chr1 34120327 34120486 -208543867 - MER5A DNA MER1_type -1 188 24 1107 183 9 43 chr1 34120503 34120733 -208543620 - AluJo SINE Alu -16 296 75 2571 32 0 0 chr1 34120733 34121014 -208543339 + AluYa5 SINE Alu 1 281 -30 1249 160 45 80 chr1 34121014 34121326 -208543027 + AluJb SINE Alu 2 302 0 2147 102 33 3 chr1 34121379 34121682 -208542671 - AluSx SINE Alu 0 312 1 2209 114 3 16 chr1 34121684 34121992 -208542361 - AluSx SINE Alu -8 304 1 183 139 0 0 chr1 34122000 34122036 -208542317 + (T)n Simple_repeat Simple_repeat 1 36 0 884 144 7 55 chr1 34122060 34122206 -208542147 - AluJo SINE Alu -169 143 5 1387 160 0 5 chr1 34122289 34122501 -208541852 - AluJb SINE Alu -17 295 85 2274 77 0 74 chr1 34122502 34122826 -208541527 - AluSg SINE Alu -10 300 1 931 154 6 74 chr1 34122829 34123004 -208541349 - FRAM SINE Alu -3 163 1 2010 166 0 0 chr1 34123023 34123325 -208541028 - AluJo SINE Alu -10 302 1 1931 158 0 19 chr1 34123773 34124089 -208540264 + AluJb SINE Alu 3 312 0 451 240 6 101 chr1 34124094 34124273 -208540080 + MIR SINE MIR 72 233 -29 304 176 59 12 chr1 34124354 34124439 -208539914 + MER113 DNA MER1_type? 108 196 -325 282 240 0 40 chr1 34124638 34124713 -208539640 + AluJo/FLAM SINE Alu 49 120 -182 2145 97 0 4 chr1 34124716 34124983 -208539370 - AluSq SINE Alu -19 294 29 1274 147 6 0 chr1 34124991 34125198 -208539155 + AluSg/x SINE Alu 102 309 0 822 169 0 0 chr1 34125216 34125340 -208539013 - FLAM_C SINE Alu -9 124 1 992 194 6 6 chr1 34125354 34125529 -208538824 + FRAM SINE Alu 1 170 -6 301 263 26 0 chr1 34125529 34125605 -208538748 - L2 LINE L2 -20 3293 3216 718 273 32 28 chr1 34125963 34126179 -208538174 - MIR SINE MIR -38 224 8 811 132 0 76 chr1 34126315 34126459 -208537894 - FLAM_C SINE Alu 0 133 1 2369 93 3 6 chr1 34126514 34126827 -208537526 + AluSp SINE Alu 1 312 -1 635 143 0 0 chr1 34126831 34126922 -208537431 + AluSg/x SINE Alu 127 217 -95 1234 120 0 6 chr1 34126922 34127089 -208537264 - AluSx SINE Alu -146 166 1 574 160 11 0 chr1 34127092 34127186 -208537167 - FRAM SINE Alu -19 157 63 273 29 0 0 chr1 34127450 34127484 -208536869 + (TG)n Simple_repeat Simple_repeat 1 34 0 1636 86 14 5 chr1 34127744 34127954 -208536399 + AluSc SINE Alu 1 212 -97 1948 124 17 10 chr1 34127955 34128245 -208536108 - AluSq SINE Alu -21 292 1 297 142 30 67 chr1 34128247 34128313 -208536040 - MIR SINE MIR -62 146 89 432 37 0 0 chr1 34129385 34129439 -208534914 + (TC)n Simple_repeat Simple_repeat 1 54 0 335 303 7 42 chr1 34129554 34129696 -208534657 + MIR3 SINE MIR 60 196 -12 186 304 58 0 chr1 34131532 34131601 -208532752 - MIR SINE MIR -109 153 81 2343 93 10 0 chr1 34131608 34131908 -208532445 + AluSq SINE Alu 10 312 -1 1426 153 0 139 chr1 34131919 34132272 -208532081 + AluSx SINE Alu 1 304 -8 431 20 0 0 chr1 34132781 34132830 -208531523 + (TC)n Simple_repeat Simple_repeat 2 50 0 623 113 0 17 chr1 34135277 34135393 -208528960 - L1MA3 LINE L1 -27 6276 6168 1143 155 0 11 chr1 34135396 34135570 -208528783 + AluJo SINE Alu 126 297 -15 24 0 0 0 chr1 34135572 34135596 -208528757 + AT_rich Low_complexity Low_complexity 1 24 0 2356 92 0 0 chr1 34135668 34135971 -208528382 - AluY SINE Alu -8 303 1 2278 104 7 0 chr1 34135971 34136270 -208528083 - AluSp SINE Alu -12 301 1 1087 83 0 0 chr1 34136273 34136405 -208527948 - AluSq/x SINE Alu -180 132 1 433 315 61 20 chr1 34136744 34136941 -208527412 + L3 LINE CR1 1362 1566 -11 243 256 38 7 chr1 34136989 34137069 -208527284 + GA-rich Low_complexity Low_complexity 1 82 0 413 278 112 69 chr1 34137198 34137724 -208526629 - L1M4 LINE L1 -1206 1537 937 23 33 0 0 chr1 34137988 34138018 -208526335 + GC_rich Low_complexity Low_complexity 1 30 0 344 238 238 24 chr1 34138624 34138788 -208525565 - L2 LINE L2 -180 3092 2894 2495 66 3 3 chr1 34138794 34139095 -208525258 + AluSx SINE Alu 1 301 -11 209 358 91 11 chr1 34139095 34139239 -208525114 - L2 LINE L2 -483 2831 2667 2086 139 0 19 chr1 34139239 34139377 -208524976 + AluSx SINE Alu 1 140 -172 2492 81 0 0 chr1 34139377 34139674 -208524679 + AluSg SINE Alu 1 297 -13 2086 139 0 19 chr1 34139674 34139845 -208524508 + AluSx SINE Alu 140 304 -8 209 358 91 11 chr1 34139845 34139887 -208524466 - L2 LINE L2 -647 2667 2630 2060 104 10 24 chr1 34139903 34140191 -208524162 - AluSx SINE Alu -17 295 12 2155 82 0 47 chr1 34140266 34140583 -208523770 - AluY SINE Alu -9 302 1 469 119 0 0 chr1 34140584 34140651 -208523702 + AluSp/q SINE Alu 187 253 -60 1723 144 35 18 chr1 34141383 34141667 -208522686 - AluJb SINE Alu -21 291 3 2402 85 0 19 chr1 34141671 34141987 -208522366 - AluY SINE Alu -1 310 1 809 115 0 72 chr1 34141992 34142131 -208522222 - FLAM_C SINE Alu -5 138 10 239 270 0 32 chr1 34142181 34142244 -208522109 - L2 LINE L2 -979 2335 2275 1009 166 121 87 chr1 34142259 34142306 -208522047 - MLT1A1 LTR MaLR 0 457 413 1798 166 45 0 chr1 34142306 34142596 -208521757 + AluJb SINE Alu 2 304 -8 1009 166 121 87 chr1 34142596 34142915 -208521438 - MLT1A1 LTR MaLR -44 413 1 249 33 0 0 chr1 34142935 34142965 -208521388 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 531 168 178 0 chr1 34142965 34143066 -208521287 - FLAM_C SINE Alu -24 119 1 513 281 58 0 chr1 34143237 34143376 -208520977 + L2 LINE L2 3167 3313 0 1626 135 46 92 chr1 34143548 34143852 -208520501 - AluJb SINE Alu -22 290 1 262 344 129 34 chr1 34143939 34144387 -208519966 - L2 LINE L2 -1635 1679 1189 1682 142 13 63 chr1 34144433 34144750 -208519603 + AluJo SINE Alu 1 301 -11 2100 81 14 30 chr1 34144786 34144951 -208519402 - AluY SINE Alu -20 291 125 2608 64 0 0 chr1 34144951 34145262 -208519091 - AluY SINE Alu 0 311 1 2389 77 7 3 chr1 34145262 34145560 -208518793 - AluSp SINE Alu -14 299 1 2100 81 14 30 chr1 34145560 34145689 -208518664 - AluY SINE Alu -184 127 1 294 320 87 0 chr1 34145743 34145846 -208518507 + MIR SINE MIR 50 161 -101 2288 101 0 3 chr1 34145894 34146190 -208518163 + AluSx SINE Alu 6 300 -12 519 150 210 0 chr1 34146484 34146584 -208517769 + FLAM_C SINE Alu 11 131 -12 2506 72 0 7 chr1 34146948 34147253 -208517100 + AluY SINE Alu 1 303 -8 328 224 141 0 chr1 34147276 34147361 -208516992 + MIR SINE MIR 30 126 -82 208 355 130 49 chr1 34147389 34147474 -208516879 - L2 LINE L2 -72 3200 3123 1922 137 7 11 chr1 34147474 34147759 -208516594 + AluSx SINE Alu 27 310 -2 208 355 130 49 chr1 34147759 34147976 -208516377 - L2 LINE L2 -149 3123 2868 1212 166 0 48 chr1 34147976 34148205 -208516148 - MER58A DNA MER1_type -4 220 3 208 355 130 49 chr1 34148205 34148225 -208516128 - L2 LINE L2 -404 2868 2851 2590 68 0 0 chr1 34148338 34148648 -208515705 + AluY SINE Alu 1 310 -1 2238 116 3 0 chr1 34148661 34148954 -208515399 + AluSx SINE Alu 1 294 -18 628 143 0 31 chr1 34148992 34149090 -208515263 - FLAM_A SINE Alu -43 99 5 348 377 63 0 chr1 34149109 34149284 -208515069 - L2 LINE L2 -533 2781 2596 272 200 70 80 chr1 34149284 34149384 -208514969 + MIR SINE MIR 117 215 -47 189 289 19 0 chr1 34149994 34150046 -208514307 - L2 LINE L2 0 3313 3261 1907 167 0 3 chr1 34150063 34150357 -208513996 + AluJo SINE Alu 1 293 -19 1900 163 26 10 chr1 34150357 34150663 -208513690 + AluJb SINE Alu 1 312 0 326 205 0 26 chr1 34150769 34150847 -208513506 - Charlie8 DNA MER1_type -2243 174 99 1186 174 5 16 chr1 34150854 34151044 -208513309 + AluJb SINE Alu 104 291 -21 193 297 54 14 chr1 34151223 34151297 -208513056 - L2 LINE L2 -665 2649 2573 1471 185 0 53 chr1 34151601 34151736 -208512617 - AluJo SINE Alu -43 269 155 2020 149 23 3 chr1 34151736 34152037 -208512316 - AluSx SINE Alu -5 307 1 1471 185 0 53 chr1 34152037 34152182 -208512171 - AluJo SINE Alu -157 155 4 29 28 0 0 chr1 34152187 34152223 -208512130 + AT_rich Low_complexity Low_complexity 1 36 0 1200 260 116 8 chr1 34152238 34152269 -208512084 - L1ME3A LINE L1 -209 5961 5931 450 303 129 26 chr1 34152269 34152775 -208511578 - L1MB4 LINE L1 -253 5927 5362 1952 172 3 0 chr1 34152775 34153083 -208511270 - AluJb SINE Alu -3 309 1 450 303 129 26 chr1 34153083 34153111 -208511242 - L1MB4 LINE L1 -818 5362 5338 257 204 0 0 chr1 34153114 34153163 -208511190 - L2 LINE L2 0 3313 3265 581 216 23 29 chr1 34153163 34153334 -208511019 - L1MB4 LINE L1 -1303 4843 4674 1774 107 114 11 chr1 34153351 34153631 -208510722 - AluSg1 SINE Alu 0 309 1 866 181 0 0 chr1 34153631 34153762 -208510591 - AluJo/FRAM SINE Alu -10 302 169 2394 197 49 43 chr1 34153911 34154137 -208510216 - Tigger7 DNA MER2_type 0 2587 2364 2216 130 3 0 chr1 34154137 34154437 -208509916 + AluSq SINE Alu 1 301 -12 2394 197 49 43 chr1 34154437 34154903 -208509450 - Tigger7 DNA MER2_type -223 2364 1 180 235 0 0 chr1 34154964 34154998 -208509355 - L2 LINE L2 -229 3043 3010 2501 65 3 0 chr1 34155211 34155504 -208508849 + AluSp SINE Alu 1 294 -19 180 0 0 0 chr1 34155665 34155685 -208508668 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2462 80 0 0 chr1 34155690 34155991 -208508362 - AluY SINE Alu -10 301 1 1850 181 3 0 chr1 34155993 34156285 -208508068 - AluJb SINE Alu -19 293 1 295 316 101 89 chr1 34156290 34156537 -208507816 - L2 LINE L2 -1 3271 3022 897 198 0 45 chr1 34156543 34156578 -208507775 - FAM SINE Alu -140 45 146 2335 93 23 0 chr1 34156578 34156879 -208507474 + AluSq SINE Alu 1 308 -5 897 198 0 45 chr1 34156879 34157020 -208507333 - FAM SINE Alu -38 147 1 218 316 158 26 chr1 34157025 34157177 -208507176 - L2 LINE L2 -243 3029 2858 256 194 32 32 chr1 34157267 34157329 -208507024 + Charlie8 DNA MER1_type 149 210 -2207 318 312 45 26 chr1 34157449 34157603 -208506750 - L2 LINE L2 -470 2844 2688 831 177 0 0 chr1 34157607 34157737 -208506616 + FLAM_A SINE Alu 3 132 -1 2271 97 13 0 chr1 34157741 34158151 -208506202 + AluSq SINE Alu 1 414 0 366 317 193 15 chr1 34158151 34158353 -208506000 - L2 LINE L2 -622 2692 2455 2134 131 3 0 chr1 34158364 34158654 -208505699 + AluSx SINE Alu 6 296 -16 244 359 58 52 chr1 34158757 34159139 -208505214 - L2 LINE L2 -778 2536 2153 722 211 8 8 chr1 34159184 34159317 -208505036 - FLAM_A SINE Alu 0 133 1 513 248 8 32 chr1 34159400 34159525 -208504828 + MIR SINE MIR 36 157 -105 2164 121 7 3 chr1 34159529 34159834 -208504519 - AluSq SINE Alu -7 306 1 2226 133 0 0 chr1 34159840 34160149 -208504204 - AluSx SINE Alu -3 309 1 2052 124 7 0 chr1 34160247 34160568 -208503785 - AluSq SINE Alu 0 313 1 461 143 0 0 chr1 34160593 34160656 -208503697 - FLAM_A SINE Alu -26 116 54 315 250 62 10 chr1 34160667 34160763 -208503590 + MIR SINE MIR 162 262 0 4932 130 46 36 chr1 34160793 34161377 -208502976 + MER6 DNA MER2_type 3 580 -285 1972 142 3 7 chr1 34161377 34161666 -208502687 - AluJb SINE Alu -24 288 1 4932 130 46 36 chr1 34161666 34161719 -208502634 + MER6 DNA MER2_type 580 631 -234 2596 57 0 0 chr1 34161719 34162017 -208502336 + AluY SINE Alu 2 299 -12 4932 130 46 36 chr1 34162017 34162229 -208502124 + MER6 DNA MER2_type 631 861 -4 2371 112 0 0 chr1 34162522 34162826 -208501527 - AluSq SINE Alu -9 304 1 655 71 301 0 chr1 34162838 34162951 -208501402 - THE1B LTR MaLR -214 150 4 775 106 0 0 chr1 34162951 34163055 -208501298 - FLAM_C SINE Alu -38 105 2 198 118 0 0 chr1 34163061 34163095 -208501258 + (T)n Simple_repeat Simple_repeat 1 34 0 931 154 6 74 chr1 34163236 34163411 -208500942 + FRAM SINE Alu 1 163 -3 2340 88 0 23 chr1 34163414 34163720 -208500633 + AluSg SINE Alu 1 299 -11 2300 106 3 3 chr1 34163721 34164024 -208500329 + AluSg SINE Alu 1 303 -7 1369 118 0 44 chr1 34164026 34164230 -208500123 - AluJb SINE Alu -115 197 3 235 246 0 18 chr1 34164352 34164409 -208499944 + GA-rich Low_complexity Low_complexity 1 56 0 1923 141 3 7 chr1 34164618 34164954 -208499399 + AluSx SINE Alu 1 335 0 1012 209 5 15 chr1 34164959 34165155 -208499198 + AluJb SINE Alu 1 194 -118 1703 146 4 21 chr1 34165158 34165439 -208498914 + AluJb SINE Alu 25 300 -12 746 143 18 0 chr1 34165892 34166004 -208498349 + FLAM_A SINE Alu 13 126 -16 224 295 91 8 chr1 34166033 34166152 -208498201 + MIR3 SINE MIR 66 156 -52 886 146 0 0 chr1 34166272 34166402 -208497951 - FLAM_C SINE Alu -3 130 1 2013 110 88 0 chr1 34166429 34166701 -208497652 + AluSx SINE Alu 1 296 -16 1184 105 0 82 chr1 34167182 34167357 -208496996 + MER6 DNA MER2_type 450 605 -260 1972 142 3 7 chr1 34167357 34167646 -208496707 - AluJb SINE Alu -24 288 1 1184 105 0 82 chr1 34167646 34167689 -208496664 + MER6 DNA MER2_type 605 650 -215 2324 79 7 0 chr1 34167699 34168004 -208496349 + AluSx SINE Alu 2 294 -18 2371 58 0 7 chr1 34168014 34168308 -208496045 + AluY SINE Alu 1 292 -19 308 260 96 0 chr1 34168356 34168460 -208495893 - MIR SINE MIR -70 192 79 300 288 144 13 chr1 34169044 34169197 -208495156 + MIR3 SINE MIR 16 188 -20 2007 89 39 0 chr1 34169984 34170264 -208494089 - AluSp SINE Alu -22 291 1 1797 136 24 20 chr1 34170290 34170584 -208493769 + AluJb SINE Alu 1 295 -17 26 0 0 0 chr1 34170628 34170654 -208493699 + AT_rich Low_complexity Low_complexity 1 26 0 2278 95 0 0 chr1 34170852 34171146 -208493207 + AluSx SINE Alu 1 294 -18 732 168 0 0 chr1 34171156 34171263 -208493090 + FLAM_A SINE Alu 18 124 -18 577 186 0 0 chr1 34171480 34171582 -208492771 - FRAM SINE Alu -3 173 72 1292 176 13 70 chr1 34171631 34171943 -208492410 + AluJo SINE Alu 2 295 -17 2302 69 0 13 chr1 34171950 34172254 -208492099 + AluY SINE Alu 1 300 -11 207 311 81 0 chr1 34172513 34172587 -208491766 - MIR SINE MIR -92 116 37 2264 119 0 0 chr1 34172633 34172945 -208491408 + AluSx SINE Alu 1 312 0 2139 77 0 0 chr1 34172998 34173271 -208491082 + AluY SINE Alu 34 306 -5 2141 102 27 0 chr1 34174292 34174586 -208489767 - AluSx SINE Alu -10 302 1 681 275 22 27 chr1 34174787 34175009 -208489344 + MIR SINE MIR 12 232 -30 2289 76 3 7 chr1 34175038 34175340 -208489013 + AluSg SINE Alu 1 301 -9 227 378 31 0 chr1 34175341 34175468 -208488885 - L2 LINE L2 -486 2828 2698 1915 144 0 20 chr1 34175482 34175620 -208488733 + AluSx SINE Alu 1 140 -172 2329 81 0 3 chr1 34175620 34175918 -208488435 + AluSg SINE Alu 1 297 -13 1915 144 0 20 chr1 34175918 34176084 -208488269 + AluSx SINE Alu 140 299 -13 1997 146 0 0 chr1 34176446 34176748 -208487605 - AluSx SINE Alu -10 302 1 320 333 63 0 chr1 34176750 34176876 -208487477 + MIR SINE MIR 123 256 -6 1165 192 108 63 chr1 34177065 34177352 -208487001 + AluJo SINE Alu 1 300 -2 300 324 37 0 chr1 34177359 34177467 -208486886 - MIR SINE MIR -139 123 12 1489 147 51 48 chr1 34177743 34178035 -208486318 + AluJb SINE Alu 6 298 -14 308 270 81 67 chr1 34178435 34178794 -208485559 - L1ME4a LINE L1 -54 6067 5704 2170 82 0 10 chr1 34178794 34179085 -208485268 + AluSx SINE Alu 1 288 -24 2083 117 0 13 chr1 34179211 34179518 -208484835 - AluSx SINE Alu -9 303 1 502 209 45 142 chr1 34179532 34179800 -208484553 + MER112 DNA MER1_type 8 249 -11 1674 116 11 36 chr1 34181371 34181648 -208482705 - AluSg SINE Alu -15 295 26 193 317 175 25 chr1 34182385 34182505 -208481848 - L2 LINE L2 -17 3255 3118 1139 172 22 26 chr1 34182520 34182747 -208481606 - L1M3e LINE L1 -5010 2020 1795 183 304 106 63 chr1 34182814 34183021 -208481332 - L2 LINE L2 -213 3059 2844 213 345 142 35 chr1 34183128 34183354 -208480999 - L2 LINE L2 -6 3266 3017 32 0 0 0 chr1 34186185 34186217 -208478136 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr1 34188745 34188784 -208475569 + GC_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr1 34188800 34188829 -208475524 + GC_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 34188917 34188947 -208475406 + GC_rich Low_complexity Low_complexity 1 30 0 233 268 270 25 chr1 34190180 34190576 -208473777 - L2 LINE L2 -742 2572 2080 801 162 0 0 chr1 34190970 34191106 -208473247 - FRAM SINE Alu -1 175 40 1115 118 140 0 chr1 34191894 34192080 -208472273 + MER30 DNA MER1_type 1 212 -18 434 324 129 47 chr1 34192182 34192438 -208471915 - L1MC4a LINE L1 -1160 6648 6372 455 188 51 8 chr1 34192459 34192576 -208471777 - L1MB7 LINE L1 0 6184 6063 2305 87 3 0 chr1 34192581 34192880 -208471473 - AluY SINE Alu -11 300 1 6506 125 86 5 chr1 34192880 34193967 -208470386 - Tigger1 DNA MER2_type -1236 1182 8 448 111 28 0 chr1 34194343 34194415 -208469938 - AluSq/x SINE Alu -200 113 40 254 80 0 40 chr1 34194416 34194466 -208469887 + Alu SINE Alu 254 301 0 * 383 156 0 0 chr1 34194465 34194529 -208469824 + MLT1C LTR MaLR 112 175 -292 598 40 0 13 chr1 34194532 34194608 -208469745 - AluSg/x SINE Alu -20 290 216 760 222 27 7 chr1 34194608 34194849 -208469504 + MLT1C LTR MaLR 172 467 0 194 305 32 21 chr1 34194849 34194944 -208469409 + L2 LINE L2 3185 3280 -33 336 272 179 23 chr1 34196205 34196378 -208467975 + MIR SINE MIR 7 206 -56 826 148 40 7 chr1 34196378 34196527 -208467826 + FRAM SINE Alu 1 153 -23 1478 147 4 49 chr1 34197384 34197649 -208466704 + AluJb SINE Alu 44 296 -16 2458 57 7 0 chr1 34197720 34198019 -208466334 - AluY SINE Alu -10 301 1 319 193 193 9 chr1 34198207 34198316 -208466037 + MIR SINE MIR 21 149 -113 260 269 62 56 chr1 34198331 34198491 -208465862 - MER5A DNA MER1_type -28 161 1 900 263 148 23 chr1 34199738 34199925 -208464428 + L2 LINE L2 832 994 -2320 1786 157 3 10 chr1 34199925 34200231 -208464122 - AluJb SINE Alu -7 305 2 900 263 148 23 chr1 34200231 34200481 -208463872 + L2 LINE L2 994 1324 -1990 246 276 21 97 chr1 34200509 34200654 -208463699 + MIR SINE MIR 119 252 -10 435 315 34 14 chr1 34200725 34200871 -208463482 - MIR SINE MIR -112 150 2 2312 70 7 0 chr1 34201280 34201578 -208462775 + AluY SINE Alu 1 300 -11 186 311 0 0 chr1 34202117 34202162 -208462191 - MIR SINE MIR -82 126 82 581 236 62 14 chr1 34202240 34202384 -208461969 + MIR SINE MIR 4 154 -108 269 91 303 0 chr1 34202452 34202518 -208461835 - HsTC2 DNA Tc2 -1811 87 2 2210 88 0 16 chr1 34203258 34203563 -208460790 + AluSx SINE Alu 1 300 -12 249 316 37 44 chr1 34203699 34203835 -208460518 + MIR SINE MIR 16 150 -112 349 268 115 32 chr1 34203988 34204145 -208460208 - MER5A DNA MER1_type 0 189 20 252 343 170 18 chr1 34205439 34205885 -208458468 + L2 LINE L2 1801 2314 -1000 964 181 18 0 chr1 34206006 34206177 -208458176 - AluJo SINE Alu -17 295 122 290 316 71 25 chr1 34206189 34206385 -208457968 + L2 LINE L2 2554 2758 -556 283 323 21 94 chr1 34206693 34206774 -208457579 + L2 LINE L2 2949 3034 -238 2088 95 0 3 chr1 34206774 34207088 -208457265 + AluSx SINE Alu 3 315 0 283 323 21 94 chr1 34207088 34207333 -208457020 + L2 LINE L2 3034 3252 -20 22 0 0 0 chr1 34208578 34208600 -208455753 + GC_rich Low_complexity Low_complexity 1 22 0 307 217 11 54 chr1 34209813 34209905 -208454448 - MIR SINE MIR -55 153 66 314 314 0 0 chr1 34210636 34210773 -208453580 + (TG)n Simple_repeat Simple_repeat 1 137 0 437 157 12 12 chr1 34210936 34211019 -208453334 + AluJ/FLAM SINE Alu 2 84 -228 206 306 0 0 chr1 34211550 34211612 -208452741 - L2 LINE L2 -292 2980 2919 369 267 52 0 chr1 34211688 34211823 -208452530 + MIR3 SINE MIR 22 163 -45 1810 134 0 4 chr1 34212677 34212945 -208451408 + AluSx SINE Alu 28 294 -18 845 122 0 30 chr1 34212966 34213097 -208451256 + FLAM_C SINE Alu 1 127 -16 1661 126 56 4 chr1 34213102 34213404 -208450949 + AluSx SINE Alu 1 316 0 262 331 141 0 chr1 34213449 34213570 -208450783 - MIR SINE MIR -8 254 117 2235 108 3 0 chr1 34214372 34214679 -208449674 + AluSq SINE Alu 1 308 -5 253 343 67 8 chr1 34214775 34214909 -208449444 + MIR SINE MIR 51 192 -70 494 207 120 53 chr1 34214947 34215097 -208449256 + MIR SINE MIR 63 222 -40 2165 99 0 13 chr1 34215102 34215398 -208448955 + AluSc SINE Alu 1 294 -15 396 40 0 0 chr1 34215398 34215448 -208448905 + (CA)n Simple_repeat Simple_repeat 2 51 0 222 191 0 0 chr1 34215754 34215801 -208448552 + CT-rich Low_complexity Low_complexity 2 48 0 1781 150 7 16 chr1 34215809 34216115 -208448238 - AluJo SINE Alu 0 312 10 2400 87 0 0 chr1 34216327 34216638 -208447715 - AluSx SINE Alu -1 311 1 403 164 106 39 chr1 34216667 34216771 -208447582 - MSTD LTR MaLR -285 111 1 379 266 118 26 chr1 34216771 34216905 -208447448 + L2 LINE L2 2854 3010 -262 2428 84 0 0 chr1 34216905 34217213 -208447140 - AluSx SINE Alu -4 308 1 379 266 118 26 chr1 34217213 34217272 -208447081 + L2 LINE L2 3010 3062 -210 232 204 20 0 chr1 34217803 34217852 -208446501 - L2 LINE L2 -690 2624 2575 356 315 238 9 chr1 34217918 34218108 -208446245 - L2 LINE L2 -950 2364 2219 1037 82 0 15 chr1 34218108 34218243 -208446110 + FLAM_C SINE Alu 1 133 0 356 315 238 9 chr1 34218243 34218392 -208445961 - L2 LINE L2 -1095 2219 1947 244 211 70 0 chr1 34218728 34218785 -208445568 + L2 LINE L2 2214 2274 -1040 1999 111 40 0 chr1 34219197 34219494 -208444859 - AluSq SINE Alu -4 309 1 2145 92 7 0 chr1 34219750 34220063 -208444290 - AluSx SINE Alu 0 315 1 185 340 117 31 chr1 34220208 34220464 -208443889 + L2 LINE L2 2933 3210 -62 862 270 14 10 chr1 34220852 34221101 -208443252 + MIR SINE MIR 15 262 0 239 139 0 0 chr1 34221107 34221143 -208443210 + MIR SINE MIR 40 75 -133 236 287 32 11 chr1 34221358 34221452 -208442901 + L3b LINE CR1 1289 1384 -199 272 173 210 0 chr1 34221844 34221925 -208442428 - L2 LINE L2 -3 3269 3172 1968 36 109 0 chr1 34221927 34222174 -208442179 + AluY SINE Alu 6 279 -32 403 304 8 8 chr1 34222249 34222374 -208441979 + L2 LINE L2 3142 3266 -47 2016 134 3 3 chr1 34222418 34222723 -208441630 - AluSx SINE Alu -7 305 1 255 285 6 50 chr1 34223538 34223717 -208440636 + C-rich Low_complexity Low_complexity 3 173 0 22 0 0 0 chr1 34223893 34223915 -208440438 + GC_rich Low_complexity Low_complexity 1 22 0 1722 149 14 7 chr1 34224656 34224945 -208439408 - AluJb SINE Alu -21 291 1 1452 150 12 78 chr1 34224945 34225144 -208439209 - AluJb SINE Alu 0 312 142 225 0 0 0 chr1 34225144 34225169 -208439184 + (TG)n Simple_repeat Simple_repeat 2 26 0 1452 150 12 78 chr1 34225169 34225303 -208439050 - AluJb SINE Alu -170 142 1 248 284 84 0 chr1 34225533 34225628 -208438725 - MIR3 SINE MIR -22 186 84 1440 288 174 28 chr1 34225995 34226729 -208437624 + L2 LINE L2 1616 2523 -791 2231 91 7 0 chr1 34226729 34227026 -208437327 - AluSg SINE Alu -11 299 1 1440 288 174 28 chr1 34227026 34227248 -208437105 + L2 LINE L2 2523 2711 -603 181 320 107 10 chr1 34227324 34227427 -208436926 + L2 LINE L2 2969 3081 -191 259 335 94 21 chr1 34227796 34227987 -208436366 - L2 LINE L2 -550 2764 2560 2311 100 0 0 chr1 34228145 34228454 -208435899 - AluSg SINE Alu -1 309 1 1405 151 43 0 chr1 34228474 34228706 -208435647 - AluJb SINE Alu -64 248 7 1808 175 0 13 chr1 34228714 34229204 -208435149 - AluJb SINE Alu 0 488 3 606 278 61 14 chr1 34229566 34229778 -208434575 - MIR SINE MIR -38 224 3 410 289 0 10 chr1 34230503 34230607 -208433746 - MIR SINE MIR -112 150 48 2313 81 0 3 chr1 34231110 34231408 -208432945 - AluY SINE Alu -14 297 1 1754 140 14 17 chr1 34231411 34231703 -208432650 - AluJo SINE Alu -21 291 1 251 246 159 0 chr1 34232254 34232323 -208432030 + MIR3 SINE MIR 78 157 -51 2340 91 3 0 chr1 34232328 34232636 -208431717 - AluSg SINE Alu 0 310 2 923 128 14 0 chr1 34232827 34232968 -208431385 + AluSg/x SINE Alu 138 280 -30 703 0 11 11 chr1 34232968 34233056 -208431297 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 205 137 20 39 chr1 34233807 34233858 -208430495 + G-rich Low_complexity Low_complexity 3 52 0 24 32 0 0 chr1 34234049 34234080 -208430273 + GC_rich Low_complexity Low_complexity 1 31 0 2007 107 24 0 chr1 34236584 34236874 -208427479 - AluSx SINE Alu -14 298 2 203 138 0 0 chr1 34237351 34237380 -208426973 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr1 34237410 34237435 -208426918 + AT_rich Low_complexity Low_complexity 1 25 0 225 293 40 0 chr1 34239726 34239801 -208424552 + MIR SINE MIR 36 113 -149 383 244 109 45 chr1 34239898 34240054 -208424299 - MIR SINE MIR -4 258 93 915 109 0 51 chr1 34240170 34240308 -208424045 - FLAM_C SINE Alu -1 132 2 194 300 17 33 chr1 34240310 34240370 -208423983 + MER5B DNA MER1_type 115 173 -5 425 335 68 29 chr1 34240812 34240838 -208423515 + L1ME4a LINE L1 5606 5630 -491 2129 101 10 3 chr1 34240838 34241136 -208423217 - AluSx SINE Alu -12 300 1 425 335 68 29 chr1 34241136 34241390 -208422963 + L1ME4a LINE L1 5630 5897 -224 1087 163 5 15 chr1 34241464 34241660 -208422693 + AluJo SINE Alu 104 297 -15 653 274 46 33 chr1 34241688 34241929 -208422424 + L2 LINE L2 2853 3096 -217 1151 107 0 24 chr1 34241932 34242101 -208422252 - AluSg/x SINE Alu -14 296 132 2251 105 0 6 chr1 34242101 34242415 -208421938 - AluSx SINE Alu 0 312 1 282 288 82 35 chr1 34242423 34242593 -208421760 + L2 LINE L2 3114 3291 -22 795 215 169 20 chr1 34242615 34242660 -208421693 + MER58A DNA MER1_type 1 38 -2382 2281 84 0 10 chr1 34242660 34242971 -208421382 + AluY SINE Alu 2 309 -2 795 215 169 20 chr1 34242971 34243120 -208421233 + MER58A DNA MER1_type 38 224 0 291 313 97 14 chr1 34243272 34243416 -208420937 + L1ME4a LINE L1 5900 6055 -66 2509 56 7 0 chr1 34243444 34243749 -208420604 - AluY SINE Alu -4 307 1 319 193 193 9 chr1 34243937 34244046 -208420307 + MIR SINE MIR 21 149 -113 260 269 62 56 chr1 34244061 34244221 -208420132 - MER5A DNA MER1_type -28 161 1 900 263 148 23 chr1 34245468 34245655 -208418698 + L2 LINE L2 832 994 -2320 1786 157 3 10 chr1 34245655 34245961 -208418392 - AluJb SINE Alu -7 305 2 900 263 148 23 chr1 34245961 34246211 -208418142 + L2 LINE L2 994 1324 -1990 246 276 21 97 chr1 34246239 34246384 -208417969 + MIR SINE MIR 119 252 -10 435 315 34 14 chr1 34246455 34246601 -208417752 - MIR SINE MIR -112 150 2 2312 70 7 0 chr1 34247010 34247308 -208417045 + AluY SINE Alu 1 300 -11 186 311 0 0 chr1 34247847 34247892 -208416461 - MIR SINE MIR -82 126 82 581 236 62 14 chr1 34247970 34248114 -208416239 + MIR SINE MIR 4 154 -108 269 91 303 0 chr1 34248182 34248248 -208416105 - HsTC2 DNA Tc2 -1811 87 2 2210 88 0 16 chr1 34248988 34249293 -208415060 + AluSx SINE Alu 1 300 -12 249 316 37 44 chr1 34249429 34249565 -208414788 + MIR SINE MIR 16 150 -112 349 268 115 32 chr1 34249718 34249875 -208414478 - MER5A DNA MER1_type 0 189 20 252 343 170 18 chr1 34251170 34251616 -208412737 + L2 LINE L2 1801 2314 -1000 964 181 18 0 chr1 34251737 34251908 -208412445 - AluJo SINE Alu -17 295 122 290 316 71 25 chr1 34251920 34252116 -208412237 + L2 LINE L2 2554 2758 -556 271 319 21 97 chr1 34252424 34252505 -208411848 + L2 LINE L2 2949 3035 -237 2088 95 0 3 chr1 34252505 34252819 -208411534 + AluSx SINE Alu 3 315 0 271 319 21 97 chr1 34252819 34253065 -208411288 + L2 LINE L2 3035 3252 -20 2290 95 0 0 chr1 34254086 34254390 -208409963 + AluSx SINE Alu 1 304 -8 1275 161 37 0 chr1 34254415 34254633 -208409720 + AluJb SINE Alu 85 310 -2 1754 160 6 28 chr1 34254720 34255039 -208409314 + AluJo SINE Alu 1 312 0 270 301 99 38 chr1 34255122 34255304 -208409049 + L1ME4a LINE L1 5634 5804 -317 1617 162 19 42 chr1 34255304 34255613 -208408740 + AluJb SINE Alu 1 302 -10 270 301 99 38 chr1 34255613 34255875 -208408478 + L1ME4a LINE L1 5804 6105 -16 596 274 142 9 chr1 34256473 34256685 -208407668 + MIR SINE MIR 9 248 -14 212 261 15 15 chr1 34256940 34257005 -208407348 + L2 LINE L2 3248 3312 -1 818 141 101 7 chr1 34257435 34257584 -208406769 + L1PA16 LINE L1 6003 6165 -1 1929 147 0 0 chr1 34257586 34257878 -208406475 + AluJb SINE Alu 1 292 -20 230 308 194 4 chr1 34257903 34258130 -208406223 + L1ME4a LINE L1 5538 5807 -314 2330 66 3 3 chr1 34258179 34258482 -208405871 + AluY SINE Alu 1 303 -8 240 252 16 79 chr1 34258520 34258647 -208405706 + L1ME4a LINE L1 5965 6083 -38 332 260 96 10 chr1 34259256 34259360 -208404993 + MIR3 SINE MIR 58 170 -38 2383 59 3 0 chr1 34259482 34259772 -208404581 - AluSp SINE Alu -12 301 11 27 29 0 0 chr1 34260494 34260528 -208403825 + AT_rich Low_complexity Low_complexity 1 34 0 468 323 90 73 chr1 34260562 34261084 -208403269 + L2 LINE L2 2546 3093 -179 2162 70 0 0 chr1 34261084 34261357 -208402996 - AluY SINE Alu 0 311 39 468 323 90 73 chr1 34261357 34261537 -208402816 + L2 LINE L2 3093 3268 -4 1830 152 27 3 chr1 34261812 34261926 -208402427 + AluJb SINE Alu 1 111 -201 252 0 0 0 chr1 34261926 34261954 -208402399 + (CA)n Simple_repeat Simple_repeat 1 28 0 1830 152 27 3 chr1 34261954 34262135 -208402218 + AluJb SINE Alu 111 303 -9 852 358 100 22 chr1 34262217 34262770 -208401583 - L2 LINE L2 -459 2855 2346 1797 186 0 0 chr1 34262770 34263066 -208401287 + AluJo SINE Alu 1 296 -16 852 358 100 22 chr1 34263066 34263463 -208400890 - L2 LINE L2 -968 2346 1831 848 195 24 0 chr1 34264021 34264190 -208400163 - MIR SINE MIR 0 262 90 2167 108 10 0 chr1 34264191 34264497 -208399856 + AluSx SINE Alu 1 309 -3 2087 125 0 0 chr1 34264925 34265220 -208399133 + AluSx SINE Alu 3 297 -15 377 277 67 46 chr1 34265664 34265859 -208398494 + L2 LINE L2 3109 3307 -6 935 222 83 152 chr1 34267266 34267582 -208396771 + L2 LINE L2 1531 1867 -1447 231 59 39 20 chr1 34267582 34267633 -208396720 + (TTTTA)n Simple_repeat Simple_repeat 3 54 0 935 222 83 152 chr1 34267633 34267750 -208396603 + L2 LINE L2 1867 1991 -1323 2156 116 0 0 chr1 34267750 34268053 -208396300 - AluSx SINE Alu -9 303 1 935 222 83 152 chr1 34268053 34268340 -208396013 + L2 LINE L2 1991 2202 -1112 2099 123 3 0 chr1 34268341 34268643 -208395710 - AluSx SINE Alu -9 303 1 1169 136 9 47 chr1 34268645 34268685 -208395668 - AluJo SINE Alu -15 297 257 2250 121 45 28 chr1 34268685 34269041 -208395312 - THE1B LTR MaLR -2 362 1 1169 136 9 47 chr1 34269041 34269213 -208395140 - AluJo SINE Alu -55 257 93 714 150 26 0 chr1 34269223 34269336 -208395017 - FLAM_C SINE Alu -17 126 11 1769 257 67 10 chr1 34269339 34269834 -208394519 + L2 LINE L2 2192 2714 -600 759 126 89 7 chr1 34269835 34269970 -208394383 + L1M3 LINE L1 5542 5687 -496 1070 126 0 0 chr1 34269977 34270151 -208394202 - AluSp SINE Alu 0 307 134 1963 130 14 3 chr1 34270151 34270444 -208393909 - AluSq SINE Alu -17 296 1 449 209 23 0 chr1 34270458 34270544 -208393809 + AluJb SINE Alu 210 297 -15 249 159 0 0 chr1 34270545 34270589 -208393764 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 1353 264 107 18 chr1 34270589 34271138 -208393215 + L2 LINE L2 2705 3312 -1 258 258 0 15 chr1 34271426 34271492 -208392861 - MIR SINE MIR -78 184 120 718 170 36 0 chr1 34271492 34271604 -208392749 + FLAM_C SINE Alu 3 118 -25 2115 95 7 0 chr1 34271619 34271903 -208392450 - AluSx SINE Alu -26 286 1 414 278 0 35 chr1 34271905 34272020 -208392333 - MIR SINE MIR -111 151 41 1758 166 3 7 chr1 34272311 34272613 -208391740 - AluJo SINE Alu -11 301 1 224 253 189 0 chr1 34272613 34272708 -208391645 + MIR SINE MIR 122 234 -28 239 340 31 41 chr1 34272714 34272811 -208391542 + L2 LINE L2 3172 3267 -5 239 247 247 31 chr1 34272821 34272918 -208391435 + MIR SINE MIR 20 137 -71 255 239 0 0 chr1 34273382 34273428 -208390925 - MER45 DNA AcHobo -1 1580 1535 1117 140 0 0 chr1 34273525 34273704 -208390649 + AluJb SINE Alu 134 312 0 384 143 26 0 chr1 34273706 34273783 -208390570 - MER63B DNA MER1_type -57 378 300 861 220 0 0 chr1 34273784 34273961 -208390392 + FRAM SINE Alu 1 176 0 288 197 0 0 chr1 34273961 34274027 -208390326 - MER63B DNA MER1_type -147 288 223 953 212 30 35 chr1 34275325 34275394 -208388959 - MER63B DNA MER1_type -827 235 167 2212 90 0 7 chr1 34275394 34275693 -208388660 - AluSq SINE Alu -16 297 1 953 212 30 35 chr1 34275693 34275854 -208388499 - MER63B DNA MER1_type -895 167 6 27 49 0 0 chr1 34276125 34276166 -208388187 + AT_rich Low_complexity Low_complexity 1 41 0 1012 70 0 0 chr1 34276166 34276294 -208388059 - AluSp/q SINE Alu -26 287 160 1715 149 11 0 chr1 34276346 34276621 -208387732 - AluJb SINE Alu -26 286 9 3078 280 82 52 chr1 34277216 34277521 -208386832 - ERVL LTR ERVL -422 5342 5047 2634 13 0 3 chr1 34277521 34277821 -208386532 + AluYa5 SINE Alu 1 299 -12 3078 280 82 52 chr1 34277821 34278051 -208386302 - ERVL LTR ERVL -717 5047 4825 1620 142 49 17 chr1 34278051 34278339 -208386014 + AluJb SINE Alu 1 297 -15 3078 280 82 52 chr1 34278339 34279336 -208385017 - ERVL LTR ERVL -939 4825 3764 1778 149 3 7 chr1 34279515 34279810 -208384543 - AluSx SINE Alu -14 298 5 566 249 203 0 chr1 34280095 34280292 -208384061 - ERVL LTR ERVL -2164 3600 3364 366 287 59 59 chr1 34280445 34280588 -208383765 - ERVL LTR ERVL -2346 3308 3163 2186 97 3 3 chr1 34280588 34280886 -208383467 - AluSp SINE Alu -15 298 1 366 287 59 59 chr1 34280886 34280996 -208383357 - ERVL LTR ERVL -2490 3164 3055 811 165 0 0 chr1 34281022 34281149 -208383204 + AluSq/x SINE Alu 1 127 -185 26 0 0 0 chr1 34281153 34281179 -208383174 + AT_rich Low_complexity Low_complexity 1 26 0 746 325 113 3 chr1 34281204 34281487 -208382866 - ERVL LTR ERVL -2725 3039 2726 237 158 18 35 chr1 34281548 34281605 -208382748 + MLT1J LTR MaLR 100 155 -356 * 303 287 11 23 chr1 34281558 34281645 -208382708 + LTR67 LTR ERVL 114 199 -358 772 142 149 27 chr1 34281840 34281988 -208382365 - AluSg/x SINE Alu -12 298 133 2126 126 0 3 chr1 34282007 34282316 -208382037 - AluSx SINE Alu -4 308 1 726 301 88 0 chr1 34282346 34282595 -208381758 - ERVL LTR ERVL -3172 2592 2322 30 0 0 0 chr1 34282595 34282625 -208381728 + AT_rich Low_complexity Low_complexity 1 30 0 1956 150 0 7 chr1 34282706 34283006 -208381347 - AluSx SINE Alu -14 298 1 1867 142 20 0 chr1 34283006 34283301 -208381052 - AluSx SINE Alu -10 302 1 305 302 52 10 chr1 34283639 34283735 -208380618 + LTR33A LTR ERVL 59 158 -365 301 243 117 29 chr1 34283979 34284082 -208380271 - ERVL LTR ERVL -3692 2072 1961 1986 134 0 3 chr1 34284319 34284618 -208379735 + AluSx SINE Alu 1 298 -14 1934 141 0 14 chr1 34284633 34284930 -208379423 + AluJb SINE Alu 5 297 -15 3525 131 52 49 chr1 34285059 34285669 -208378684 + LTR9 LTR ERV1 1 612 0 711 148 19 0 chr1 34285672 34285780 -208378573 + HUERS-P3 LTR ERV1 4 113 -8806 29811 156 36 36 chr1 34285782 34287649 -208376704 + HUERS-P3 LTR ERV1 266 2133 -5421 2125 125 0 3 chr1 34287649 34287961 -208376392 - AluSq SINE Alu -2 311 1 29811 156 36 36 chr1 34287961 34288595 -208375758 + HUERS-P3 LTR ERV1 2133 2766 -4788 2315 71 0 29 chr1 34288595 34288903 -208375450 - AluY SINE Alu -12 299 1 29811 156 36 36 chr1 34288903 34291364 -208372989 + HUERS-P3 LTR ERV1 2766 5228 -2326 2350 82 0 0 chr1 34291364 34291668 -208372685 - AluY SINE Alu -6 305 2 2196 101 0 7 chr1 34291670 34291977 -208372376 - AluSp SINE Alu -8 305 1 29811 156 36 36 chr1 34291977 34293806 -208370547 + HUERS-P3 LTR ERV1 5229 7084 -470 391 125 18 0 chr1 34294027 34294083 -208370270 + HUERS-P3 LTR ERV1 8059 8115 -804 2421 61 3 0 chr1 34294514 34294811 -208369542 + AluSp SINE Alu 2 299 -14 2024 134 0 0 chr1 34295041 34295346 -208369007 - AluSx SINE Alu -7 305 1 1805 178 118 67 chr1 34295823 34296240 -208368113 - LTR21B LTR ERV1 0 438 1 2028 87 13 55 chr1 34297784 34298095 -208366258 - AluSg SINE Alu -12 298 1 324 0 0 0 chr1 34299457 34299493 -208364860 + (TGG)n Simple_repeat Simple_repeat 3 38 0 254 304 116 0 chr1 34300161 34300273 -208364080 + MIR SINE MIR 137 261 -1 5354 128 52 0 chr1 34300284 34301066 -208363287 + HUERS-P3 LTR ERV1 8096 8918 -1 3649 146 14 56 chr1 34301066 34301193 -208363160 + LTR9 LTR ERV1 1 132 -480 2162 105 0 0 chr1 34301193 34301487 -208362866 - AluSx SINE Alu -18 294 1 3649 146 14 56 chr1 34301487 34301998 -208362355 + LTR9 LTR ERV1 132 612 0 180 0 0 0 chr1 34302755 34302775 -208361578 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 2219 88 0 7 chr1 34302777 34303072 -208361281 - AluY SINE Alu -18 293 1 888 187 0 0 chr1 34303177 34303327 -208361026 + AluJo SINE Alu 1 150 -162 315 301 12 0 chr1 34303438 34303521 -208360832 + L1M4 LINE L1 3674 3757 -2389 1740 166 7 0 chr1 34304425 34304715 -208359638 - AluJb SINE Alu -20 292 1 2056 156 0 3 chr1 34304742 34305062 -208359291 + 7SLRNA srpRNA srpRNA 2 320 0 3900 127 79 22 chr1 34305484 34306384 -208357969 + MER11A LTR ERVK 152 1266 0 2617 93 31 6 chr1 34306396 34306751 -208357602 - THE1B LTR MaLR 0 364 1 1903 144 0 43 chr1 34307041 34307367 -208356986 - AluSx SINE Alu 0 312 1 1704 137 16 42 chr1 34307738 34307910 -208356443 - AluSx SINE Alu -14 298 136 1920 127 13 7 chr1 34307910 34308217 -208356136 - AluSx SINE Alu -3 309 1 1704 137 16 42 chr1 34308217 34308350 -208356003 - AluSx SINE Alu -176 136 1 438 272 27 41 chr1 34309679 34309826 -208354527 + L2 LINE L2 2709 2853 -461 783 182 0 0 chr1 34309827 34309948 -208354405 - MER45A DNA AcHobo -2 176 56 1137 206 8 35 chr1 34310253 34310370 -208353983 - L1MB5 LINE L1 0 6174 6055 1810 170 0 7 chr1 34310370 34310676 -208353677 - AluSx SINE Alu -8 304 1 1137 206 8 35 chr1 34310676 34310815 -208353538 - L1MB5 LINE L1 -119 6055 5925 1180 167 5 0 chr1 34310816 34311014 -208353339 + MLT2B1 LTR ERVL 1 199 -321 2911 78 90 5 chr1 34311036 34311449 -208352904 + LTR7 LTR ERV1 1 448 -2 9960 90 33 18 chr1 34311451 34312898 -208351455 + HERVH LTR ERV1 1 1469 -6244 2090 97 3 32 chr1 34313063 34313371 -208350982 - AluSx SINE Alu -13 299 1 445 315 150 5 chr1 34313423 34313623 -208350730 + MIR SINE MIR 3 231 -31 1529 136 62 0 chr1 34313717 34313960 -208350393 - AluSx SINE Alu -26 286 29 2414 62 0 0 chr1 34314035 34314342 -208350011 + AluY SINE Alu 1 307 -4 300 158 0 0 chr1 34314842 34314899 -208349454 + (CGG)n Simple_repeat Simple_repeat 2 58 0 702 212 0 0 chr1 34315501 34315731 -208348622 + (CAT)n Simple_repeat Simple_repeat 1 230 0 712 194 6 6 chr1 34315760 34315940 -208348413 + (CAT)n Simple_repeat Simple_repeat 1 180 0 209 262 0 0 chr1 34315961 34316003 -208348350 - L2 LINE L2 -11 3261 3220 516 228 23 42 chr1 34316057 34316219 -208348134 + MIR SINE MIR 35 192 -63 252 0 0 0 chr1 34316422 34316450 -208347903 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 2009 109 0 11 chr1 34316450 34316733 -208347620 - AluSx SINE Alu -32 280 1 1190 115 0 0 chr1 34316976 34317150 -208347203 + AluSg/x SINE Alu 137 310 -2 1782 166 0 26 chr1 34317329 34317637 -208346716 - AluJo SINE Alu -12 300 1 2155 112 0 0 chr1 34317663 34317967 -208346386 - AluSx SINE Alu -8 304 1 1636 143 21 96 chr1 34318041 34318376 -208345977 + AluJb SINE Alu 1 310 -2 193 359 26 0 chr1 34318574 34318652 -208345701 - MIR SINE MIR -75 133 54 2179 93 6 13 chr1 34319115 34319428 -208344925 + AluSx SINE Alu 1 311 -1 2056 133 0 0 chr1 34319632 34319933 -208344420 - AluSx SINE Alu -11 301 1 946 146 0 0 chr1 34319936 34320114 -208344239 - AluJb SINE Alu 0 315 138 358 318 48 37 chr1 34320264 34320453 -208343900 + L2 LINE L2 2553 2743 -571 1197 98 0 0 chr1 34320458 34320622 -208343731 + AluSg/x SINE Alu 137 300 -12 730 137 0 24 chr1 34320656 34320780 -208343573 + L2 LINE L2 3193 3313 0 338 368 16 28 chr1 34320817 34320999 -208343354 + L2 LINE L2 2883 3062 -210 1557 147 13 76 chr1 34321434 34321590 -208342763 + AluJb SINE Alu 1 129 -183 2053 118 3 3 chr1 34321590 34321886 -208342467 + AluSq SINE Alu 1 296 -17 1557 147 13 76 chr1 34321886 34322043 -208342310 + AluJb SINE Alu 129 294 -18 2176 112 0 0 chr1 34322045 34322339 -208342014 + AluSx SINE Alu 1 294 -18 941 237 50 0 chr1 34322739 34322937 -208341416 - MIR SINE MIR -4 258 51 252 0 0 0 chr1 34322982 34323010 -208341343 + (ATATG)n Simple_repeat Simple_repeat 5 32 0 2161 107 7 0 chr1 34323058 34323366 -208340987 + AluSx SINE Alu 1 310 -2 305 183 0 113 chr1 34323388 34323459 -208340894 - MER2 DNA MER2_type -1 344 282 546 217 0 9 chr1 34323461 34323567 -208340786 - MER8 DNA MER2_type -133 106 2 1171 130 142 170 chr1 34323904 34324305 -208340048 - MLT1B LTR MaLR 0 390 1 273 211 110 46 chr1 34324355 34324464 -208339889 - MER112 DNA MER1_type -139 121 6 23 0 0 0 chr1 34325436 34325459 -208338894 + AT_rich Low_complexity Low_complexity 1 23 0 2184 83 83 0 chr1 34325460 34325774 -208338579 - L1PA14 LINE L1 -17 6144 5805 759 175 65 26 chr1 34325794 34325948 -208338405 - AluJb SINE Alu -7 305 146 1352 122 0 0 chr1 34326048 34326237 -208338116 - AluSc SINE Alu -120 189 1 589 215 8 0 chr1 34326237 34326367 -208337986 - L1M LINE L1 -751 5423 5293 1719 177 198 32 chr1 34326380 34326778 -208337575 - LTR10A LTR ERV1 -61 548 59 2253 76 3 3 chr1 34326778 34327079 -208337274 + AluY SINE Alu 1 301 -10 1719 177 198 32 chr1 34327079 34327150 -208337203 - LTR10A LTR ERV1 -550 59 1 11793 159 13 19 chr1 34327153 34330310 -208334043 - Harlequin LTR ERV1 -4 6645 1807 295 169 197 14 chr1 34330313 34330384 -208333969 + LTR8 LTR ERV1 174 257 -434 3638 74 0 35 chr1 34330384 34331016 -208333337 - Harlequin LTR ERV1 -5178 1718 1063 1297 88 0 11 chr1 34331023 34331204 -208333149 - AluY SINE Alu 0 311 133 1880 97 42 10 chr1 34331204 34331493 -208332860 - AluSc SINE Alu -11 298 1 1715 142 44 9 chr1 34331493 34331832 -208332521 - Harlequin LTR ERV1 -5884 1012 716 944 219 73 18 chr1 34332206 34332262 -208332091 - Harlequin LTR ERV1 -6360 289 238 6264 128 30 21 chr1 34332262 34333260 -208331093 + LTR13 LTR ERVK 1 1007 0 944 219 73 18 chr1 34333260 34333477 -208330876 - Harlequin LTR ERV1 -6411 238 1 1896 182 153 35 chr1 34333486 34333976 -208330377 - LTR10A LTR ERV1 -61 548 1 1396 164 0 0 chr1 34333996 34334234 -208330119 - AluJo SINE Alu -7 305 68 2235 101 16 0 chr1 34334234 34334542 -208329811 + AluSq SINE Alu 1 313 0 438 155 14 0 chr1 34334666 34334737 -208329616 - AluJo SINE Alu -239 73 2 858 150 89 77 chr1 34334738 34334984 -208329369 - L1M4 LINE L1 -858 5288 5040 201 213 0 0 chr1 34334994 34335041 -208329312 + CT-rich Low_complexity Low_complexity 2 48 0 714 163 0 23 chr1 34335051 34335180 -208329173 - FLAM_C SINE Alu 0 143 18 244 184 0 20 chr1 34335187 34335236 -208329117 - L1MC/D LINE L1 -634 5710 5663 991 98 14 0 chr1 34335246 34335389 -208328964 - AluSg/x SINE Alu -33 279 135 1765 162 3 0 chr1 34335392 34335703 -208328650 - AluSx SINE Alu 0 312 1 572 147 0 11 chr1 34335703 34335798 -208328555 - L1MC/D LINE L1 -514 5670 5577 538 185 37 0 chr1 34335801 34335909 -208328444 - LTR47A LTR ERVL -283 169 58 1288 183 35 7 chr1 34335923 34336212 -208328141 - L1M4 LINE L1 -1092 5054 4758 261 0 0 0 chr1 34336229 34336258 -208328095 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1887 95 29 4 chr1 34336260 34336534 -208327819 - AluSq SINE Alu -29 284 4 2280 55 7 3 chr1 34336753 34337044 -208327309 + AluY SINE Alu 4 295 -16 691 212 8 0 chr1 34337134 34337266 -208327087 - FLAM_A SINE Alu 0 133 1 751 240 221 44 chr1 34337413 34337468 -208326885 - LTR50 LTR ERVL -2 793 749 2121 118 0 0 chr1 34337468 34337774 -208326579 - AluSx SINE Alu -6 306 1 751 240 221 44 chr1 34337774 34337804 -208326549 - LTR50 LTR ERVL -46 749 726 2157 84 0 27 chr1 34337804 34338103 -208326250 - AluY SINE Alu -20 291 1 751 240 221 44 chr1 34338103 34338262 -208326091 - LTR50 LTR ERVL -69 726 596 706 189 25 77 chr1 34338262 34338325 -208326028 - MER53 DNA DNA -3 186 121 1970 129 26 0 chr1 34338325 34338627 -208325726 - AluSq SINE Alu -3 310 1 706 189 25 77 chr1 34338627 34338759 -208325594 - MER53 DNA DNA -68 121 1 751 240 221 44 chr1 34338759 34339105 -208325248 - LTR50 LTR ERVL -199 596 1 1603 176 10 0 chr1 34339241 34339537 -208324816 + AluJo SINE Alu 1 299 -13 2363 68 0 0 chr1 34339562 34339856 -208324497 - AluY SINE Alu -17 294 1 1955 163 11 68 chr1 34340203 34340572 -208323781 + MER66B LTR ERV1 1 348 -138 489 207 11 0 chr1 34340672 34340759 -208323594 - AluJ/FLAM SINE Alu -223 89 2 741 216 162 19 chr1 34340797 34340873 -208323480 - MLT2B1 LTR ERVL -2 518 454 3923 160 64 13 chr1 34340873 34341565 -208322788 + LTR8A LTR ERV1 1 727 0 741 216 162 19 chr1 34341565 34341722 -208322631 - MLT2B1 LTR ERVL -66 454 242 2311 80 3 0 chr1 34341722 34342022 -208322331 + AluSp SINE Alu 3 303 -10 741 216 162 19 chr1 34342022 34342046 -208322307 - MLT2B1 LTR ERVL -278 242 223 1027 196 88 0 chr1 34342071 34342275 -208322078 + AluJo SINE Alu 10 231 -81 3104 90 8 153 chr1 34342277 34342993 -208321360 - MER4B LTR ERV1 0 779 1 416 158 0 49 chr1 34342993 34343075 -208321278 + AluJo SINE Alu 230 307 -5 2791 75 122 5 chr1 34343085 34343486 -208320867 - LTR7 LTR ERV1 -2 448 1 2375 98 53 13 chr1 34343486 34343863 -208320490 - HERVH LTR ERV1 0 7713 7322 1513 101 18 14 chr1 34343861 34344080 -208320273 - HERVH LTR ERV1 -1894 5819 5600 * 4510 134 1 1 chr1 34344081 34344743 -208319610 - HERVH LTR ERV1 -2564 5149 4488 3443 109 4 6 chr1 34344745 34345248 -208319105 - HERVH LTR ERV1 -3720 3993 3492 930 128 20 0 chr1 34345238 34345386 -208318967 - HERVH LTR ERV1 -4423 3290 3140 * 2396 144 9 16 chr1 34345380 34345810 -208318543 - HERVH LTR ERV1 -4726 2987 2561 599 130 11 11 chr1 34345811 34345903 -208318450 - AluSg/x SINE Alu -144 166 75 616 296 61 44 chr1 34345961 34346255 -208318098 + MLT1K LTR MaLR 27 325 -263 1705 150 0 46 chr1 34346401 34346727 -208317626 - AluSx SINE Alu -1 311 1 232 227 0 0 chr1 34346731 34346775 -208317578 + MLT1L LTR MaLR 569 612 -3 262 359 45 51 chr1 34346783 34346939 -208317414 + L2 LINE L2 3098 3252 -20 2225 80 0 35 chr1 34347004 34347317 -208317036 + AluSx SINE Alu 1 302 -10 1441 148 4 49 chr1 34347390 34347654 -208316699 - AluJb SINE Alu -17 295 44 861 134 40 20 chr1 34348511 34348660 -208315693 - FRAM SINE Alu -25 151 1 376 272 179 23 chr1 34348660 34348833 -208315520 - MIR SINE MIR -56 206 7 1147 163 43 8 chr1 34350248 34350286 -208314067 + L1M4 LINE L1 5165 5200 -978 2279 98 0 0 chr1 34350286 34350591 -208313762 + AluSc SINE Alu 1 305 -4 1147 163 43 8 chr1 34350591 34350857 -208313496 + L1M4 LINE L1 5200 5474 -704 1738 127 0 98 chr1 34351004 34351350 -208313003 + AluSx SINE Alu 1 312 0 1213 73 0 12 chr1 34351441 34351605 -208312748 + L1PA5 LINE L1 5993 6154 0 764 163 0 59 chr1 34351679 34351814 -208312539 + FLAM_A SINE Alu 1 127 -6 1717 160 3 14 chr1 34351828 34352122 -208312231 + AluJo SINE Alu 11 301 -11 405 286 90 51 chr1 34352157 34352335 -208312018 - L2 LINE L2 -50 3222 3038 2994 98 26 5 chr1 34352441 34352858 -208311495 + MSTA LTR MaLR 3 428 0 2669 180 4 32 chr1 34354178 34354677 -208309676 - MER66B LTR ERV1 0 486 2 495 268 8 0 chr1 34355147 34355270 -208309083 + MER5C DNA MER1_type 1 124 -200 180 222 206 32 chr1 34355384 34355447 -208308906 + MER5C DNA MER1_type 248 321 -3 1837 159 13 0 chr1 34355455 34355763 -208308590 + AluSx SINE Alu 1 312 0 2183 77 11 0 chr1 34355851 34356137 -208308216 + AluSp SINE Alu 1 289 -24 841 136 8 0 chr1 34356449 34356574 -208307779 + MER20 DNA MER1_type 94 219 0 2162 95 0 3 chr1 34356662 34356992 -208307361 - AluSx SINE Alu 0 329 1 2493 65 0 0 chr1 34358475 34358784 -208305569 - AluY SINE Alu -2 309 1 2213 80 27 0 chr1 34360192 34360491 -208303862 - AluSq SINE Alu -6 307 1 261 277 181 0 chr1 34360602 34360696 -208303657 - L2 LINE L2 -6 3307 3197 2045 89 14 7 chr1 34361039 34361332 -208303021 - AluSc SINE Alu -10 299 5 1560 91 228 0 chr1 34361374 34361615 -208302738 + AluSx SINE Alu 1 296 -6 22 56 0 0 chr1 34361634 34361670 -208302683 + AT_rich Low_complexity Low_complexity 1 36 0 1977 110 65 3 chr1 34361816 34362108 -208302245 + AluSq SINE Alu 2 311 -2 273 211 53 13 chr1 34362127 34362203 -208302150 - MIR3 SINE MIR 0 208 130 26 50 0 0 chr1 34362622 34362662 -208301691 + AT_rich Low_complexity Low_complexity 1 40 0 2012 136 10 0 chr1 34362691 34362992 -208301361 - AluSx SINE Alu -8 304 1 1044 158 0 0 chr1 34363629 34363787 -208300566 + FRAM SINE Alu 1 155 -21 24 0 0 0 chr1 34364647 34364671 -208299682 + AT_rich Low_complexity Low_complexity 1 24 0 822 154 99 33 chr1 34364958 34365140 -208299213 + MER58A DNA MER1_type 27 220 -4 22 0 0 0 chr1 34365460 34365482 -208298871 + AT_rich Low_complexity Low_complexity 1 22 0 307 222 0 0 chr1 34365776 34365830 -208298523 + MER5A DNA MER1_type 1 54 -135 195 107 0 0 chr1 34365830 34365858 -208298495 + MER5A DNA MER1_type 156 183 -6 1854 145 3 3 chr1 34365860 34366157 -208298196 + AluJb SINE Alu 1 297 -15 2211 100 0 7 chr1 34366157 34366466 -208297887 + AluSx SINE Alu 1 307 -5 2045 137 0 0 chr1 34366479 34366786 -208297567 - AluSx SINE Alu -5 307 1 1908 163 51 108 chr1 34367382 34367662 -208296691 + L1MB5 LINE L1 5660 5896 -278 2326 62 7 3 chr1 34367662 34367966 -208296387 + AluY SINE Alu 1 305 -6 1908 163 51 108 chr1 34367966 34368230 -208296123 + L1MB5 LINE L1 5896 6173 -1 22 0 0 0 chr1 34368384 34368406 -208295947 + GC_rich Low_complexity Low_complexity 1 22 0 25 95 0 0 chr1 34368554 34368628 -208295725 + GC_rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr1 34368676 34368698 -208295655 + GC_rich Low_complexity Low_complexity 1 22 0 233 109 22 0 chr1 34368726 34368772 -208295581 + (CGG)n Simple_repeat Simple_repeat 2 48 0 959 230 55 48 chr1 34368859 34369168 -208295185 - L1MC4a LINE L1 -339 7469 7159 872 169 0 0 chr1 34369177 34369326 -208295027 - AluJb SINE Alu -19 293 146 379 194 0 4 chr1 34369314 34369406 -208294947 - AluS SINE Alu -236 65 1 * 434 169 113 40 chr1 34369420 34369544 -208294809 - FLAM_A SINE Alu 0 133 1 1620 206 30 24 chr1 34369547 34369570 -208294783 - L1MC4 LINE L1 -861 7032 7011 2151 117 0 0 chr1 34369570 34369878 -208294475 - AluSx SINE Alu -4 308 1 1620 206 30 24 chr1 34369878 34370250 -208294103 - L1MC4 LINE L1 -882 7011 6518 365 209 112 37 chr1 34370330 34370404 -208293949 - L1ME4a LINE L1 -49 6072 6005 2301 77 0 0 chr1 34370404 34370703 -208293650 + AluY SINE Alu 1 299 -12 365 209 112 37 chr1 34370703 34370815 -208293538 - L1ME4a LINE L1 -116 6005 5872 774 182 40 17 chr1 34370825 34371001 -208293352 + MER58 DNA MER1_type 20 199 -142 766 212 123 24 chr1 34371045 34371338 -208293015 + MLT1G LTR MaLR 269 590 0 913 117 0 0 chr1 34371375 34371503 -208292850 + AluSq/x SINE Alu 18 145 -167 2392 64 0 0 chr1 34371601 34371897 -208292456 + AluY SINE Alu 1 296 -15 266 73 0 0 chr1 34372078 34372119 -208292234 - Alu SINE Alu -3 299 259 865 150 0 0 chr1 34372298 34372425 -208291928 + FLAM_C SINE Alu 2 128 -5 2432 59 7 0 chr1 34372446 34372750 -208291603 + AluY SINE Alu 1 306 -5 2575 91 8 39 chr1 34372763 34373149 -208291204 + THE1C LTR MaLR 1 374 -1 308 83 0 0 chr1 34373157 34373205 -208291148 + Alu SINE Alu 254 301 -1 842 189 115 77 chr1 34373205 34373465 -208290888 + L1ME1 LINE L1 5321 5590 -576 222 62 0 0 chr1 34373472 34373504 -208290849 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1423 191 11 7 chr1 34373504 34373781 -208290572 - AluJb SINE Alu -34 278 1 1225 183 154 19 chr1 34373782 34374287 -208290066 + L1ME1 LINE L1 5584 5906 -260 1210 194 17 24 chr1 34374288 34374579 -208289774 - MER33 DNA MER1_type -46 278 1 2238 100 0 0 chr1 34374669 34374969 -208289384 + AluSq SINE Alu 1 300 -13 2107 111 20 0 chr1 34375193 34375490 -208288863 - AluSq SINE Alu -10 303 1 1989 141 3 3 chr1 34375648 34375960 -208288393 - AluSx SINE Alu 0 312 1 202 341 47 71 chr1 34375993 34376163 -208288190 - L2 LINE L2 -56 3216 3051 2339 81 0 0 chr1 34376223 34376519 -208287834 + AluSc SINE Alu 1 296 -13 1138 139 0 6 chr1 34377255 34377427 -208286926 - AluSp SINE Alu -9 304 134 1416 96 0 5 chr1 34377427 34377615 -208286738 - AluSx SINE Alu -125 187 1 219 292 0 0 chr1 34377731 34377779 -208286574 - L2 LINE L2 -16 3297 3250 202 232 18 18 chr1 34377971 34378027 -208286326 + L2 LINE L2 3216 3271 -1 251 270 139 9 chr1 34378255 34378370 -208285983 + LTR16A LTR ERVL 321 450 0 2416 54 0 3 chr1 34378493 34378788 -208285565 - AluY SINE Alu -17 294 1 209 56 0 28 chr1 34378841 34378877 -208285476 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 936 75 0 0 chr1 34378877 34378997 -208285356 - AluY SINE Alu -191 120 1 653 188 8 17 chr1 34379038 34379155 -208285198 + FLAM_A SINE Alu 1 116 -17 1939 144 7 13 chr1 34379235 34379541 -208284812 + AluSx SINE Alu 1 304 -8 844 293 68 79 chr1 34379544 34379598 -208284755 + L1MC/D LINE L1 4735 4788 -1358 1646 164 134 33 chr1 34379598 34379987 -208284366 + MSTC LTR MaLR 1 428 0 844 293 68 79 chr1 34379987 34380049 -208284304 + L1MC/D LINE L1 4788 4849 -1297 1016 195 0 0 chr1 34380049 34380218 -208284135 - FAM SINE Alu -6 169 1 844 293 68 79 chr1 34380218 34380632 -208283721 + L1MC/D LINE L1 4849 5260 -886 319 279 37 48 chr1 34380634 34380663 -208283690 + L1MC/D LINE L1 5291 5319 -802 2185 103 0 0 chr1 34380663 34380963 -208283390 + AluSx SINE Alu 1 300 -12 186 43 0 0 chr1 34380967 34380990 -208283363 + (CAA)n Simple_repeat Simple_repeat 2 24 0 319 279 37 48 chr1 34380990 34381178 -208283175 + L1MC/D LINE L1 5322 5504 -617 2082 131 0 3 chr1 34381192 34381505 -208282848 - AluSx SINE Alu 0 312 1 2479 181 21 122 chr1 34381520 34382039 -208282314 + L1ME2 LINE L1 5436 6006 -158 2063 110 33 0 chr1 34382039 34382338 -208282015 + AluSx SINE Alu 1 309 -3 2479 181 21 122 chr1 34382338 34382492 -208281861 + L1ME2 LINE L1 6006 6019 -145 1653 158 3 28 chr1 34382492 34382783 -208281570 + AluJb SINE Alu 1 284 -28 2479 181 21 122 chr1 34382783 34382904 -208281449 + L1ME2 LINE L1 6019 6151 -13 2114 117 0 0 chr1 34383075 34383373 -208280980 + AluSx SINE Alu 15 312 0 607 101 0 0 chr1 34383563 34383642 -208280711 + AluJo SINE Alu 2 80 -232 1168 148 23 23 chr1 34383692 34383742 -208280611 + AluJo SINE Alu 85 134 -178 1589 113 124 19 chr1 34383742 34384007 -208280346 + AluSg SINE Alu 1 293 -17 1168 148 23 23 chr1 34384007 34384173 -208280180 + AluJo SINE Alu 133 301 -11 3250 101 25 138 chr1 34384175 34384317 -208280036 - Tigger3b DNA MER2_type -1797 1232 1076 2316 129 18 3 chr1 34384317 34384649 -208279704 + MER1B DNA MER1_type 1 337 0 3250 101 25 138 chr1 34384649 34384754 -208279599 - Tigger3b DNA MER2_type -1953 1076 961 1748 134 18 4 chr1 34384754 34385031 -208279322 - AluSq SINE Alu -32 281 1 3250 101 25 138 chr1 34385031 34385088 -208279265 - Tigger3b DNA MER2_type -2068 961 899 1976 106 0 3 chr1 34385088 34385370 -208278983 + AluSq SINE Alu 1 281 -32 3250 101 25 138 chr1 34385370 34385573 -208278780 - Tigger3b DNA MER2_type -2130 899 675 2049 107 14 0 chr1 34385573 34385863 -208278490 - AluSx SINE Alu -18 294 1 3250 101 25 138 chr1 34385863 34385967 -208278386 - Tigger3b DNA MER2_type -2354 675 561 2271 53 20 0 chr1 34385967 34386266 -208278087 + AluY SINE Alu 1 305 -6 1658 176 20 0 chr1 34386273 34386575 -208277778 + AluJo SINE Alu 1 308 -4 3250 101 25 138 chr1 34386575 34386695 -208277658 - Tigger3b DNA MER2_type -2324 705 573 887 160 0 7 chr1 34386699 34386849 -208277504 - AluJo SINE Alu -163 149 1 2876 141 105 19 chr1 34386851 34386886 -208277467 - Tigger3b DNA MER2_type -2459 569 538 186 71 0 0 chr1 34386886 34386914 -208277439 + (CA)n Simple_repeat Simple_repeat 2 29 0 2876 141 105 19 chr1 34386914 34387176 -208277177 - Tigger3b DNA MER2_type -2490 538 300 2157 99 3 0 chr1 34387176 34387468 -208276885 - AluSg SINE Alu -17 293 1 2876 141 105 19 chr1 34387468 34387693 -208276660 - Tigger3b DNA MER2_type -2728 300 1 1670 158 54 3 chr1 34387864 34388161 -208276192 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 34388264 34388286 -208276067 + AT_rich Low_complexity Low_complexity 1 22 0 655 246 12 47 chr1 34388370 34388541 -208275812 + LTR41 LTR ERVL 1 165 -608 2303 56 3 7 chr1 34388557 34388861 -208275492 - AluY SINE Alu -8 303 1 1862 104 97 0 chr1 34388864 34389143 -208275210 - AluSq SINE Alu -7 306 1 275 196 6 184 chr1 34389370 34389454 -208274899 + LTR41 LTR ERVL 585 628 -145 1285 167 119 11 chr1 34389454 34389723 -208274630 - AluSg1 SINE Alu -11 298 1 275 196 6 184 chr1 34389723 34389801 -208274552 + LTR41 LTR ERVL 628 718 -55 * 1190 194 73 13 chr1 34389789 34390067 -208274286 + MLT2D LTR ERVL 76 364 -50 2203 88 3 0 chr1 34390068 34390380 -208273973 + AluSq SINE Alu 1 313 0 2163 89 17 0 chr1 34390423 34390716 -208273637 + AluSc SINE Alu 1 298 -11 2016 109 3 7 chr1 34390755 34391038 -208273315 - AluSx SINE Alu -30 282 1 1045 146 35 0 chr1 34391040 34391211 -208273142 - AluSq SINE Alu -6 307 131 252 227 53 0 chr1 34391214 34391289 -208273064 + LTR50 LTR ERVL 715 793 -2 253 268 0 0 chr1 34391467 34391523 -208272830 - L2 LINE L2 -225 3047 2992 2252 100 3 0 chr1 34391528 34391839 -208272514 + AluSx SINE Alu 1 312 0 2109 122 0 0 chr1 34391881 34392184 -208272169 - AluSx SINE Alu -1 311 9 2134 75 48 7 chr1 34392190 34392484 -208271869 - AluSx SINE Alu -6 306 1 1137 119 0 17 chr1 34392526 34392683 -208271670 + AluSq SINE Alu 137 292 -21 622 191 7 0 chr1 34392683 34392819 -208271534 + L1MA4 LINE L1 6160 6296 -4 1137 119 0 17 chr1 34392819 34392837 -208271516 + AluSq SINE Alu 292 309 -4 722 248 64 54 chr1 34393208 34393250 -208271103 - MLT1I LTR MaLR -26 383 343 1536 194 8 79 chr1 34393250 34393527 -208270826 - MER58B DNA MER1_type -2079 341 95 1667 169 7 10 chr1 34393527 34393834 -208270519 + AluJb SINE Alu 1 306 -6 1536 194 8 79 chr1 34393834 34393923 -208270430 - MER58B DNA MER1_type -2325 95 1 722 248 64 54 chr1 34393923 34394239 -208270114 - MLT1I LTR MaLR -66 343 51 347 200 250 10 chr1 34394343 34394443 -208269910 + MER5C DNA MER1_type 1 124 -200 850 137 0 0 chr1 34394595 34394726 -208269627 + AluJo/FLAM SINE Alu 1 131 -181 1679 151 6 35 chr1 34394728 34394871 -208269482 + AluJb SINE Alu 1 147 -165 2254 77 7 0 chr1 34394871 34395168 -208269185 + AluY SINE Alu 1 299 -12 1679 151 6 35 chr1 34395168 34395336 -208269017 + AluJb SINE Alu 147 303 -9 2086 112 0 3 chr1 34395467 34395762 -208268591 + AluSx SINE Alu 1 294 -18 376 338 82 15 chr1 34395790 34395991 -208268362 + L1MDa LINE L1 1267 1789 -4682 * 423 283 80 76 chr1 34395971 34395999 -208268354 + HAL1 LINE L1 1309 1335 -1172 1928 155 0 3 chr1 34395999 34396303 -208268050 + AluJb SINE Alu 1 303 -9 423 283 80 76 chr1 34396303 34396408 -208267945 + HAL1 LINE L1 1335 1438 -1069 1998 98 0 76 chr1 34396408 34396736 -208267617 + AluSq SINE Alu 1 303 -10 423 283 80 76 chr1 34396736 34396838 -208267515 + HAL1 LINE L1 1438 1546 -961 274 330 0 0 chr1 34396939 34397036 -208267317 + HAL1 LINE L1 1570 1666 -841 2226 106 0 0 chr1 34397176 34397488 -208266865 - AluSx SINE Alu 0 312 1 2134 121 0 3 chr1 34397535 34397848 -208266505 + AluSx SINE Alu 1 312 0 2237 115 0 0 chr1 34397921 34398226 -208266127 - AluSq SINE Alu -8 305 1 2415 74 0 0 chr1 34398428 34398739 -208265614 + AluY SINE Alu 1 311 0 2163 95 3 3 chr1 34398829 34399123 -208265230 - AluSg SINE Alu -16 294 1 1695 144 53 7 chr1 34399126 34399411 -208264942 - AluJo SINE Alu -14 298 1 821 160 15 0 chr1 34399538 34399669 -208264684 + AluJo/FLAM SINE Alu 1 133 -169 2065 125 0 0 chr1 34399669 34399974 -208264379 + AluSq SINE Alu 1 305 -8 1994 74 102 0 chr1 34400091 34400375 -208263978 + AluSp SINE Alu 1 313 0 1711 86 4 39 chr1 34400483 34400740 -208263613 + AluSp SINE Alu 58 305 -8 280 301 0 124 chr1 34400807 34400884 -208263469 - MLT1-int LTR MaLR -489 882 797 1621 141 65 31 chr1 34400884 34401174 -208263179 - AluJb SINE Alu -7 305 6 280 301 0 124 chr1 34401174 34401305 -208263048 - MLT1-int LTR MaLR -574 797 700 1150 135 60 10 chr1 34401323 34401523 -208262830 - AluJo SINE Alu -102 210 1 22 0 0 0 chr1 34401594 34401616 -208262737 + AT_rich Low_complexity Low_complexity 1 22 0 869 129 8 8 chr1 34401623 34401755 -208262598 - FLAM_C SINE Alu -11 132 1 761 249 21 5 chr1 34401933 34402122 -208262231 - MLT1-int LTR MaLR -764 607 416 2114 110 0 0 chr1 34402308 34402599 -208261754 - AluSx SINE Alu -19 293 3 311 213 234 0 chr1 34402631 34402725 -208261628 - MLT1-int LTR MaLR -1614 121 6 1678 146 45 3 chr1 34402765 34403052 -208261301 + AluJo SINE Alu 1 299 -13 1621 206 60 23 chr1 34403106 34403606 -208260747 + MLT1G LTR MaLR 10 590 0 481 315 133 30 chr1 34403606 34403814 -208260539 + L2 LINE L2 1759 1944 -1370 1547 195 0 13 chr1 34403814 34404122 -208260231 - AluJo SINE Alu -6 306 3 481 315 133 30 chr1 34404122 34404341 -208260012 + L2 LINE L2 1944 2230 -1084 773 123 0 0 chr1 34404348 34404462 -208259891 - AluSg/x SINE Alu 0 309 196 28 0 0 0 chr1 34404466 34404494 -208259859 + AT_rich Low_complexity Low_complexity 1 28 0 552 289 209 44 chr1 34404494 34405290 -208259063 + L2 LINE L2 2376 3286 -27 2259 91 7 0 chr1 34405306 34405614 -208258739 + AluSg SINE Alu 1 310 0 2174 113 0 0 chr1 34405813 34406123 -208258230 - AluSg SINE Alu 0 310 1 27 49 0 0 chr1 34407429 34407470 -208256883 + GC_rich Low_complexity Low_complexity 1 41 0 26 88 0 0 chr1 34407482 34407550 -208256803 + GC_rich Low_complexity Low_complexity 1 68 0 37 39 0 0 chr1 34407715 34407766 -208256587 + GC_rich Low_complexity Low_complexity 1 51 0 31 58 0 0 chr1 34407893 34407945 -208256408 + GC_rich Low_complexity Low_complexity 1 52 0 205 174 64 156 chr1 34408368 34408477 -208255876 - MIR SINE MIR -51 211 113 677 230 138 30 chr1 34409121 34409434 -208254919 + L2 LINE L2 2720 3057 -256 1154 154 93 125 chr1 34409479 34409855 -208254498 - MLT1A1 LTR MaLR 0 365 2 363 167 0 0 chr1 34409873 34409927 -208254426 + Tigger5 DNA MER2_type 1 54 -2269 586 156 0 0 chr1 34409935 34410025 -208254328 + Tigger5 DNA MER2_type 2234 2323 0 1794 101 10 78 chr1 34410221 34410529 -208253824 + AluSg SINE Alu 1 287 -23 2284 74 0 32 chr1 34411023 34411333 -208253020 - AluSq SINE Alu -13 300 1 1303 201 27 24 chr1 34411333 34411627 -208252726 - L1MB7 LINE L1 -21 6163 5869 2318 72 0 0 chr1 34411631 34411922 -208252431 - AluY SINE Alu -18 293 3 846 195 19 0 chr1 34411924 34412083 -208252270 - AluJb SINE Alu -16 296 135 2250 174 2 29 chr1 34412083 34412122 -208252231 - L1MB7 LINE L1 -312 5872 5833 2197 104 43 43 chr1 34412122 34412364 -208251989 - MER7A DNA MER2_type -2692 346 105 1886 129 4 0 chr1 34412364 34412644 -208251709 + AluSx SINE Alu 1 281 -31 186 43 0 0 chr1 34412648 34412671 -208251682 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2197 104 43 43 chr1 34412671 34412769 -208251584 - MER7A DNA MER2_type -2935 103 3 2250 174 2 29 chr1 34412769 34413144 -208251209 - L1MB7 LINE L1 -351 5833 5469 211 234 0 0 chr1 34413151 34413198 -208251155 + A-rich Low_complexity Low_complexity 1 47 0 701 124 9 0 chr1 34413219 34413324 -208251029 - L1MB7 LINE L1 -711 5469 5364 394 206 61 53 chr1 34413350 34413481 -208250872 - MIR SINE MIR -65 197 66 506 340 20 98 chr1 34413554 34414054 -208250299 + L2 LINE L2 2807 3267 -5 2110 120 0 0 chr1 34414119 34414420 -208249933 + AluSx SINE Alu 10 310 -2 752 202 77 18 chr1 34414432 34414600 -208249753 + AluJb SINE Alu 122 299 -13 1958 146 0 7 chr1 34414850 34415152 -208249201 - AluJb SINE Alu -12 300 1 1042 133 0 46 chr1 34415297 34415470 -208248883 - FRAM SINE Alu -1 165 1 433 125 0 0 chr1 34415532 34415604 -208248749 + Alu SINE Alu 240 311 -1 848 128 0 47 chr1 34415644 34415793 -208248560 + AluJb SINE Alu 171 312 0 2221 106 0 3 chr1 34415800 34416111 -208248242 + AluSg SINE Alu 1 310 0 2090 108 3 0 chr1 34416272 34416569 -208247784 - AluSx SINE Alu -1 311 14 457 232 16 56 chr1 34416689 34416814 -208247539 - MIR SINE MIR 0 262 143 251 125 0 0 chr1 34416814 34416854 -208247499 - MSTA LTR MaLR 0 428 389 1812 138 11 0 chr1 34416859 34417157 -208247196 + AluSg SINE Alu 1 301 0 2147 105 7 0 chr1 34417161 34417456 -208246897 + AluSq SINE Alu 2 298 -15 611 219 7 58 chr1 34417554 34417709 -208246644 + FRAM SINE Alu 23 169 -7 237 264 27 55 chr1 34417878 34417988 -208246365 - MLT2F LTR ERVL -519 144 38 * 250 194 56 56 chr1 34417920 34417992 -208246361 - MLT1J LTR MaLR -341 170 99 860 101 34 0 chr1 34418025 34418144 -208246209 + FLAM_C SINE Alu 2 124 -9 1655 162 6 32 chr1 34418280 34418594 -208245759 + AluJb SINE Alu 1 306 -6 2295 70 7 0 chr1 34418625 34418923 -208245430 + AluSq SINE Alu 1 300 -13 1471 164 90 0 chr1 34419112 34419380 -208244973 + AluJb SINE Alu 1 292 -20 1936 117 21 0 chr1 34419382 34419672 -208244681 + AluSp SINE Alu 2 297 -16 655 214 8 0 chr1 34419694 34419820 -208244533 - FLAM_C SINE Alu -5 128 2 1858 177 7 0 chr1 34420032 34420320 -208244033 + AluJb SINE Alu 3 292 -20 2129 121 0 19 chr1 34420326 34420641 -208243712 + AluSx SINE Alu 1 309 -3 24 77 0 0 chr1 34420714 34420766 -208243587 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr1 34420812 34420845 -208243508 + AT_rich Low_complexity Low_complexity 1 33 0 201 121 73 65 chr1 34420845 34420932 -208243421 + (TTATA)n Simple_repeat Simple_repeat 6 126 0 2193 125 0 0 chr1 34421013 34421308 -208243045 - AluSx SINE Alu -17 295 1 21 36 0 0 chr1 34421309 34421337 -208243016 + AT_rich Low_complexity Low_complexity 1 28 0 2494 76 3 0 chr1 34421553 34421854 -208242499 + AluSp SINE Alu 1 302 -11 2168 120 7 0 chr1 34421866 34422167 -208242186 + AluSx SINE Alu 1 303 -9 1862 99 80 0 chr1 34422409 34422727 -208241626 - AluSx SINE Alu 0 339 1 348 336 16 8 chr1 34422849 34422974 -208241379 - MIR3 SINE MIR -40 168 43 202 162 0 0 chr1 34423019 34423056 -208241297 + MIR SINE MIR 127 163 -99 2357 73 0 0 chr1 34423056 34423342 -208241011 + AluY SINE Alu 1 286 -25 208 129 32 81 chr1 34423344 34423406 -208240947 + MIR SINE MIR 146 204 -58 34 0 0 22 chr1 34423836 34423867 -208240486 + AT_rich Low_complexity Low_complexity 1 32 -12 1223 143 58 104 chr1 34423867 34424010 -208240343 - AluJo SINE Alu -18 294 171 2303 108 13 0 chr1 34424010 34424316 -208240037 - AluSg SINE Alu 0 310 1 1223 143 58 104 chr1 34424316 34424480 -208239873 - AluJo SINE Alu -141 171 1 34 0 0 22 chr1 34424480 34424493 -208239860 + AT_rich Low_complexity Low_complexity 32 44 0 2241 115 0 3 chr1 34424544 34424848 -208239505 + AluSc SINE Alu 1 303 -6 2225 108 0 3 chr1 34424968 34425256 -208239097 + AluSx SINE Alu 1 287 -25 31 44 0 0 chr1 34425382 34425427 -208238926 + AT_rich Low_complexity Low_complexity 1 45 0 1608 163 8 12 chr1 34425455 34425712 -208238641 - AluJo SINE Alu -56 256 1 234 203 68 68 chr1 34425749 34425823 -208238530 + L2 LINE L2 2205 2278 -1036 333 0 0 0 chr1 34426387 34426424 -208237929 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 256 54 62 chr1 34426811 34426940 -208237413 - MIR SINE MIR -15 247 120 1771 130 0 0 chr1 34427064 34427317 -208237036 - AluSx SINE Alu -16 296 44 1582 148 165 62 chr1 34427340 34427406 -208236947 + MSTC LTR MaLR 1 59 -369 1960 160 0 3 chr1 34427406 34427712 -208236641 - AluJb SINE Alu -6 306 2 1582 148 165 62 chr1 34427712 34427849 -208236504 + MSTC LTR MaLR 59 180 -248 2578 114 72 8 chr1 34427849 34428251 -208236102 - MSTA LTR MaLR 0 428 1 1582 148 165 62 chr1 34428251 34428385 -208235968 + MSTC LTR MaLR 180 374 -54 303 93 0 173 chr1 34428427 34428502 -208235851 + MSTC LTR MaLR 361 422 -6 2096 137 6 19 chr1 34428560 34428874 -208235479 - AluSx SINE Alu -2 310 1 284 350 81 25 chr1 34429087 34429284 -208235069 + L2 LINE L2 2837 3044 -228 1244 203 36 73 chr1 34429296 34429518 -208234835 - MLT1C LTR MaLR -65 402 200 643 173 55 8 chr1 34429518 34429645 -208234708 - FLAM_C SINE Alu 0 133 1 1244 203 36 73 chr1 34429645 34429835 -208234518 - MLT1C LTR MaLR -267 200 5 1683 149 41 60 chr1 34429889 34430204 -208234149 - AluJo SINE Alu -3 309 1 2295 78 3 17 chr1 34430226 34430519 -208233834 - AluSp SINE Alu -24 289 1 2155 112 3 22 chr1 34430519 34430831 -208233522 - AluSx SINE Alu -5 307 1 600 181 9 0 chr1 34431201 34431306 -208233047 + FRAM SINE Alu 2 107 -69 2136 137 0 31 chr1 34431399 34431721 -208232632 - AluSx SINE Alu 0 312 1 219 311 0 0 chr1 34432788 34432849 -208231504 - L3 LINE CR1 -11 1566 1506 287 176 0 0 chr1 34432945 34432996 -208231357 + MER112 DNA MER1_type 1 51 -209 1699 177 16 29 chr1 34432996 34433306 -208231047 + AluJb SINE Alu 1 306 -6 1680 159 14 17 chr1 34433316 34433606 -208230747 + AluJo SINE Alu 1 289 -23 27 0 0 0 chr1 34433606 34433633 -208230720 + AT_rich Low_complexity Low_complexity 1 27 0 397 280 59 0 chr1 34433703 34433821 -208230532 - L2 LINE L2 0 3313 3189 2518 69 0 3 chr1 34433868 34434171 -208230182 + AluY SINE Alu 1 302 -9 1818 161 0 35 chr1 34434180 34434491 -208229862 + AluJb SINE Alu 1 300 -12 293 182 61 0 chr1 34434506 34434572 -208229781 - L3 LINE CR1 -276 1301 1232 293 268 24 81 chr1 34434650 34434773 -208229580 - L2 LINE L2 -248 3065 2950 289 217 52 52 chr1 34434808 34434923 -208229430 - L2 LINE L2 -459 2855 2741 2213 123 131 8 chr1 34434961 34435342 -208229011 - MSTA LTR MaLR 0 428 1 2506 74 7 0 chr1 34435461 34435770 -208228583 + AluY SINE Alu 1 311 0 2112 108 0 30 chr1 34435810 34436106 -208228247 + AluSg SINE Alu 3 289 -21 4816 203 74 54 chr1 34436106 34436339 -208228014 - L1ME2 LINE L1 -10 6223 5996 2569 51 0 0 chr1 34436339 34436634 -208227719 - AluY SINE Alu -16 295 1 4816 203 74 54 chr1 34436634 34437330 -208227023 - L1ME2 LINE L1 -237 5996 5315 2487 81 3 0 chr1 34437330 34437640 -208226713 - AluY SINE Alu 0 311 1 4816 203 74 54 chr1 34437640 34437728 -208226625 - L1ME2 LINE L1 -918 5315 5230 774 149 0 71 chr1 34437728 34437869 -208226484 - FLAM_C SINE Alu 0 133 3 4816 203 74 54 chr1 34437869 34438825 -208225528 - L1ME2 LINE L1 -1003 5230 4217 2296 107 0 0 chr1 34438825 34439124 -208225229 - AluSx SINE Alu -13 299 1 4816 203 74 54 chr1 34439124 34439514 -208224839 - L1ME2 LINE L1 -2016 4217 3836 2227 112 0 7 chr1 34439530 34439825 -208224528 - AluSx SINE Alu -19 293 1 1257 139 0 0 chr1 34439849 34440022 -208224331 - AluSg/x SINE Alu -9 301 129 2772 201 58 104 chr1 34440022 34440344 -208224009 - L1ME2 LINE L1 -2409 3806 3471 2223 130 0 3 chr1 34440344 34440645 -208223708 - AluSx SINE Alu -12 300 1 2772 201 58 104 chr1 34440645 34441016 -208223337 - L1ME2 LINE L1 -2744 3471 3085 2338 82 0 16 chr1 34441016 34441322 -208223031 - AluSg SINE Alu -9 301 1 2772 201 58 104 chr1 34441322 34441371 -208222982 - L1ME2 LINE L1 -3130 3085 3035 1957 158 3 13 chr1 34441371 34441682 -208222671 - AluJb SINE Alu -4 308 1 2772 201 58 104 chr1 34441682 34441741 -208222612 - L1ME2 LINE L1 -3180 3035 2975 2489 74 0 7 chr1 34441741 34442051 -208222302 + AluSp SINE Alu 1 308 -5 2772 201 58 104 chr1 34442051 34442271 -208222082 - L1ME2 LINE L1 -3240 2975 2841 1703 164 31 10 chr1 34442271 34442564 -208221789 + AluJo SINE Alu 1 299 -13 2772 201 58 104 chr1 34442564 34442721 -208221632 - L1ME2 LINE L1 -3374 2841 2678 1624 193 13 7 chr1 34442722 34443023 -208221330 - AluJo SINE Alu -9 303 1 460 248 28 0 chr1 34443023 34443164 -208221189 - L1ME2 LINE L1 -4094 2302 2158 385 216 32 53 chr1 34443147 34443165 -208221188 - L1ME2 LINE L1 -4185 2211 2194 * 2337 101 7 0 chr1 34443165 34443473 -208220880 - AluSg SINE Alu 0 310 1 385 216 32 53 chr1 34443473 34443525 -208220828 - L1ME2 LINE L1 -4202 2194 2142 1512 205 0 13 chr1 34443525 34443823 -208220530 + AluJo SINE Alu 11 304 -8 385 216 32 53 chr1 34443823 34443941 -208220412 - L1ME2 LINE L1 -4254 2142 2026 841 226 4 113 chr1 34443998 34444237 -208220116 + MER58A DNA MER1_type 11 223 -1 227 274 0 0 chr1 34444313 34444364 -208219989 - L1ME2 LINE L1 -4985 1220 1170 2335 95 7 0 chr1 34444383 34444677 -208219676 - AluSq SINE Alu -17 296 1 979 115 0 0 chr1 34444677 34444807 -208219546 - AluSq/x SINE Alu -176 136 7 2208 117 3 7 chr1 34444815 34445122 -208219231 - AluSx SINE Alu -6 306 1 1129 109 0 0 chr1 34445144 34445291 -208219062 - AluSg/x SINE Alu -13 297 151 688 142 0 0 chr1 34445291 34445397 -208218956 - AluJo/FLAM SINE Alu -205 107 2 659 251 103 92 chr1 34445398 34445532 -208218821 - L1ME2 LINE L1 -5210 1186 1055 1886 151 37 7 chr1 34445532 34445831 -208218522 - AluSx SINE Alu -4 308 1 659 251 103 92 chr1 34445831 34445860 -208218493 - L1ME2 LINE L1 -5341 1055 1028 2104 118 0 14 chr1 34445860 34446019 -208218334 - AluSx SINE Alu -20 292 137 1922 121 36 42 chr1 34446019 34446325 -208218028 - AluSx SINE Alu -8 304 1 2104 118 0 14 chr1 34446325 34446461 -208217892 - AluSx SINE Alu -175 137 1 659 251 103 92 chr1 34446461 34446640 -208217713 - L1ME2 LINE L1 -5368 1028 852 212 0 36 0 chr1 34446640 34446668 -208217685 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 949 191 0 0 chr1 34446669 34446826 -208217527 - FAM SINE Alu -18 157 1 659 251 103 92 chr1 34446826 34447115 -208217238 - L1ME2 LINE L1 -5544 852 541 2309 106 0 6 chr1 34447115 34447427 -208216926 + AluSx SINE Alu 1 310 -2 659 251 103 92 chr1 34447427 34447472 -208216881 - L1ME2 LINE L1 -5855 541 498 503 252 32 41 chr1 34447628 34447846 -208216507 - L1ME2 LINE L1 -6173 223 8 935 150 17 46 chr1 34448028 34448201 -208216152 + AluSg/x SINE Alu 135 302 -8 1961 135 27 17 chr1 34448220 34448517 -208215836 + AluSx SINE Alu 1 300 -12 295 313 0 10 chr1 34448521 34448617 -208215736 + L1ME LINE L1 5491 5585 -536 1241 182 151 23 chr1 34448665 34449016 -208215337 - MSTD LTR MaLR 0 396 1 389 95 93 0 chr1 34449028 34449416 -208214937 + (TA)n Simple_repeat Simple_repeat 1 424 0 2324 96 0 0 chr1 34449416 34449707 -208214646 - AluSq SINE Alu -22 291 1 1837 143 70 17 chr1 34449730 34450086 -208214267 - THE1C LTR MaLR 0 375 1 1572 137 9 0 chr1 34450188 34450421 -208213932 + MER46A DNA MER2_type 1 235 -1 2248 96 24 0 chr1 34450421 34450712 -208213641 + AluSp SINE Alu 1 298 -15 2044 136 7 7 chr1 34451154 34451455 -208212898 + AluJb SINE Alu 1 301 -11 278 217 0 14 chr1 34451541 34451610 -208212743 + L1M4 LINE L1 3806 3873 -2273 1614 174 65 119 chr1 34451611 34451805 -208212548 + MLT1C LTR MaLR 1 204 -263 2044 123 0 45 chr1 34451805 34452113 -208212240 - AluSx SINE Alu -18 294 1 1614 174 65 119 chr1 34452113 34452412 -208211941 + MLT1C LTR MaLR 204 467 0 1908 160 0 25 chr1 34452556 34452875 -208211478 - AluJo SINE Alu -1 311 1 900 275 97 38 chr1 34452877 34453079 -208211274 + L1M4 LINE L1 4027 4215 -1931 1759 149 62 0 chr1 34453079 34453367 -208210986 - AluJo SINE Alu -4 308 3 900 275 97 38 chr1 34453367 34453698 -208210655 + L1M4 LINE L1 4215 4592 -1554 2366 94 0 3 chr1 34453775 34454083 -208210270 + AluSq SINE Alu 1 307 -6 2172 98 7 10 chr1 34454091 34454386 -208209967 + AluSp SINE Alu 1 294 -19 1718 243 156 25 chr1 34454417 34455018 -208209335 - L2 LINE L2 -2 3311 2545 2285 74 21 0 chr1 34455018 34455302 -208209051 + AluSq SINE Alu 1 290 -23 1718 243 156 25 chr1 34455302 34455543 -208208810 - L2 LINE L2 -768 2545 2337 802 144 0 0 chr1 34455554 34455672 -208208681 + FLAM_C SINE Alu 1 118 -15 30 0 0 0 chr1 34455672 34455702 -208208651 + AT_rich Low_complexity Low_complexity 1 30 0 4293 172 49 8 chr1 34455707 34456441 -208207912 + MER21B LTR ERV1 1 764 -99 1287 248 73 65 chr1 34456441 34456757 -208207596 - L2 LINE L2 -1101 2213 1890 2309 110 0 0 chr1 34456757 34457049 -208207304 + AluSx SINE Alu 1 292 -20 1287 248 73 65 chr1 34457049 34457228 -208207125 - L2 LINE L2 -1424 1890 1714 315 148 0 0 chr1 34457233 34457287 -208207066 - Alu SINE Alu 0 302 249 2321 95 0 0 chr1 34457311 34457606 -208206747 - AluSx SINE Alu -17 295 1 2148 117 0 7 chr1 34457608 34457907 -208206446 - AluSx SINE Alu -15 297 1 425 266 70 21 chr1 34457990 34458133 -208206220 - L1MEd LINE L1 -5421 698 549 933 105 0 8 chr1 34458156 34458289 -208206064 - FLAM_C SINE Alu -1 132 1 527 302 44 22 chr1 34458290 34458515 -208205838 - L1MEd LINE L1 -5558 561 332 418 280 114 0 chr1 34458618 34458750 -208205603 - L1MEd LINE L1 -5969 150 4 231 255 70 70 chr1 34458762 34458919 -208205434 + L2 LINE L2 2982 3138 -175 2079 124 0 49 chr1 34458958 34459264 -208205089 - AluSx SINE Alu -21 291 1 1752 149 0 40 chr1 34459273 34459574 -208204779 - AluJo SINE Alu -23 289 1 826 128 30 38 chr1 34459686 34459819 -208204534 + FLAM_C SINE Alu 1 132 -1 2249 79 7 0 chr1 34459879 34460196 -208204157 - AluSc SINE Alu 0 319 1 1522 134 11 65 chr1 34460343 34460544 -208203809 + AluJo SINE Alu 35 218 -94 2268 100 0 22 chr1 34460544 34460863 -208203490 - AluSx SINE Alu 0 312 1 1522 134 11 65 chr1 34460863 34460938 -208203415 + AluJo SINE Alu 218 296 -16 2277 106 0 7 chr1 34461970 34462271 -208202082 + AluSx SINE Alu 6 304 -8 28 48 0 0 chr1 34462290 34462332 -208202021 + AT_rich Low_complexity Low_complexity 1 42 0 2274 100 0 17 chr1 34462536 34462837 -208201516 + AluSg SINE Alu 1 296 -14 202 229 0 0 chr1 34462979 34463027 -208201326 + T-rich Low_complexity Low_complexity 1 48 0 2227 119 6 3 chr1 34463311 34463623 -208200730 - AluSq SINE Alu 0 313 1 572 107 0 0 chr1 34463623 34463707 -208200646 - AluJ/FRAM SINE Alu -10 302 219 2109 118 0 26 chr1 34463707 34464013 -208200340 - AluJb SINE Alu -14 298 1 1796 145 9 50 chr1 34464046 34464143 -208200210 + AluSx SINE Alu 1 100 -212 2572 51 0 3 chr1 34464143 34464439 -208199914 + AluY SINE Alu 1 295 -16 1796 145 9 50 chr1 34464439 34464659 -208199694 + AluSx SINE Alu 100 305 -7 2193 100 42 0 chr1 34465058 34465347 -208199006 - AluSx SINE Alu -8 304 4 1030 253 65 32 chr1 34465356 34465727 -208198626 - L1MC4 LINE L1 -964 7078 6696 1958 121 28 42 chr1 34465797 34466109 -208198244 - AluSx SINE Alu 0 308 1 2304 118 0 13 chr1 34466279 34466592 -208197761 - AluSx SINE Alu -3 309 1 21 0 0 0 chr1 34466686 34466707 -208197646 + AT_rich Low_complexity Low_complexity 1 21 0 262 197 0 49 chr1 34466793 34466854 -208197499 - MIR SINE MIR -42 220 163 26 0 0 0 chr1 34467159 34467185 -208197168 + AT_rich Low_complexity Low_complexity 1 26 0 1145 168 34 38 chr1 34467280 34467489 -208196864 + AluJb SINE Alu 86 293 -19 2246 96 0 0 chr1 34467493 34467820 -208196533 + AluSg SINE Alu 2 328 0 2368 83 10 3 chr1 34469249 34469550 -208194803 + AluSq SINE Alu 1 303 -10 208 196 137 0 chr1 34469638 34469689 -208194664 - MIR SINE MIR -96 166 109 2474 70 7 0 chr1 34470103 34470404 -208193949 + AluSp SINE Alu 1 303 -10 2571 61 0 3 chr1 34470596 34470906 -208193447 - AluY SINE Alu -2 309 1 2191 84 3 0 chr1 34471197 34471483 -208192870 - AluSg SINE Alu -23 287 1 2317 69 10 0 chr1 34472924 34473227 -208191126 + AluSx SINE Alu 1 306 -6 2233 106 0 3 chr1 34473477 34473789 -208190564 + AluSx SINE Alu 1 311 -1 7536 166 102 49 chr1 34474011 34475674 -208188679 - MER52A LTR ERV1 0 1755 5 2032 128 7 0 chr1 34476120 34476417 -208187936 + AluSx SINE Alu 1 299 -13 549 176 151 8 chr1 34476677 34476796 -208187557 + MER5B DNA MER1_type 1 136 -42 2353 65 0 0 chr1 34476801 34477091 -208187262 + AluSc SINE Alu 1 290 -19 1614 163 7 30 chr1 34477095 34477390 -208186963 + AluJo SINE Alu 1 288 -24 387 0 0 0 chr1 34477393 34477436 -208186917 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2112 99 17 0 chr1 34478253 34478545 -208185808 - AluSx SINE Alu -15 297 1 2131 96 14 0 chr1 34478601 34478894 -208185459 + AluSq SINE Alu 3 299 -14 1463 162 7 52 chr1 34479046 34479355 -208184998 + AluJo SINE Alu 13 307 -5 2170 86 33 0 chr1 34479695 34479998 -208184355 + AluSq SINE Alu 1 313 0 1824 104 7 7 chr1 34480471 34480741 -208183612 - AluSx SINE Alu -42 270 1 1351 180 70 0 chr1 34481027 34481127 -208183226 + AluJo SINE Alu 1 93 -219 4897 85 19 27 chr1 34481127 34481820 -208182533 + LTR8 LTR ERV1 5 691 0 1351 180 70 0 chr1 34481820 34481991 -208182362 + AluJo SINE Alu 93 291 -21 2142 102 10 0 chr1 34481991 34482285 -208182068 + AluSx SINE Alu 1 297 -15 1265 40 7 0 chr1 34482285 34482435 -208181918 - MER4E LTR ERV1 -615 151 1 609 14 0 0 chr1 34482484 34482554 -208181799 + (TTATA)n Simple_repeat Simple_repeat 3 72 0 1141 74 0 0 chr1 34482560 34482708 -208181645 - AluSg/x SINE Alu -20 292 145 1897 96 0 8 chr1 34482709 34482970 -208181383 + AluSc SINE Alu 34 292 -17 2230 86 3 0 chr1 34483199 34483491 -208180862 - AluSp SINE Alu -20 293 1 2226 98 0 0 chr1 34483565 34483860 -208180493 - AluSq SINE Alu -18 295 1 220 328 0 0 chr1 34483952 34484013 -208180340 - MIR3 SINE MIR -27 181 121 888 152 0 0 chr1 34484290 34484422 -208179931 + FLAM_C SINE Alu 2 133 0 2216 79 0 20 chr1 34484439 34484742 -208179611 + AluY SINE Alu 1 297 -14 1398 170 23 4 chr1 34484835 34485100 -208179253 - AluJb SINE Alu -6 306 37 2121 110 3 0 chr1 34485400 34485700 -208178653 - AluSg1 SINE Alu -8 301 1 379 253 86 52 chr1 34485780 34485954 -208178399 + Charlie8 DNA MER1_type 106 285 -2132 2205 107 3 3 chr1 34486356 34486666 -208177687 - AluSp SINE Alu -3 310 1 23 78 0 0 chr1 34486687 34486738 -208177615 + AT_rich Low_complexity Low_complexity 1 51 0 508 107 40 0 chr1 34486806 34486881 -208177472 + MER51A LTR ERV1 1 78 -556 1865 124 25 44 chr1 34486920 34487235 -208177118 + MER51A LTR ERV1 326 634 0 2003 128 0 3 chr1 34487287 34487584 -208176769 - AluJb SINE Alu -16 296 1 1927 129 0 10 chr1 34487934 34488236 -208176117 - AluSx SINE Alu -13 299 1 1734 160 14 7 chr1 34488543 34488831 -208175522 + AluJo SINE Alu 1 290 -22 2295 91 3 0 chr1 34489174 34489481 -208174872 + AluY SINE Alu 1 308 -3 235 330 110 10 chr1 34490201 34490301 -208174052 + MIR SINE MIR 36 145 -63 3061 124 37 8 chr1 34490302 34490793 -208173560 + L1PA15 LINE L1 5661 6165 0 197 203 0 102 chr1 34491098 34491157 -208173196 + MIR3 SINE MIR 152 204 -4 861 296 182 9 chr1 34491259 34491688 -208172665 + L2 LINE L2 1079 1581 -1733 853 276 179 26 chr1 34491714 34491894 -208172459 + L2 LINE L2 2825 2976 -337 2558 98 11 21 chr1 34491894 34492271 -208172082 + THE1C LTR MaLR 1 373 -2 853 276 179 26 chr1 34492271 34492514 -208171839 + L2 LINE L2 2976 3313 0 2218 105 0 0 chr1 34492667 34492962 -208171391 + AluSx SINE Alu 1 295 -17 2092 104 10 0 chr1 34492997 34493294 -208171059 + AluSx SINE Alu 1 300 -12 1866 114 40 4 chr1 34493317 34493629 -208170724 + AluSx SINE Alu 1 322 0 632 202 0 25 chr1 34493655 34493774 -208170579 + FLAM_A SINE Alu 10 125 -17 1943 128 48 39 chr1 34493850 34493926 -208170427 + MER7A DNA MER2_type 1 75 -2963 2227 93 0 7 chr1 34493926 34494228 -208170125 - AluSq SINE Alu -13 300 1 1943 128 48 39 chr1 34494228 34494487 -208169866 + MER7A DNA MER2_type 75 337 -9 1188 194 49 74 chr1 34494509 34494593 -208169760 + MER58B DNA MER1_type 1 86 -2334 2115 119 3 0 chr1 34494593 34494904 -208169449 - AluSx SINE Alu 0 312 1 1188 194 49 74 chr1 34494904 34495169 -208169184 + MER58B DNA MER1_type 86 341 0 269 309 111 6 chr1 34495221 34495383 -208168970 - MIR3 SINE MIR 0 208 30 1576 159 10 34 chr1 34495810 34496106 -208168247 + AluJo SINE Alu 1 289 -23 1911 84 7 46 chr1 34496118 34496403 -208167950 + AluSp SINE Alu 1 274 -39 2293 84 3 0 chr1 34496410 34496706 -208167647 + AluSx SINE Alu 1 297 -15 1658 158 31 3 chr1 34496718 34497010 -208167343 + AluSg SINE Alu 1 300 -10 1833 164 0 16 chr1 34497184 34497501 -208166852 + AluJo SINE Alu 1 312 0 2258 101 0 0 chr1 34497798 34498105 -208166248 - AluSc SINE Alu -1 308 2 195 69 0 0 chr1 34498128 34498157 -208166196 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 808 94 11 171 chr1 34498228 34498300 -208166053 + AluJo SINE Alu 72 154 -158 1377 139 19 104 chr1 34498300 34498609 -208165744 + AluJo SINE Alu 1 283 -29 198 0 0 0 chr1 34498609 34498631 -208165722 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 808 94 11 171 chr1 34498631 34498738 -208165615 + AluJo SINE Alu 152 223 -89 1945 123 19 7 chr1 34498784 34499092 -208165261 + AluSx SINE Alu 1 312 0 1811 167 3 0 chr1 34499129 34499440 -208164913 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 34499947 34499969 -208164384 + AT_rich Low_complexity Low_complexity 1 22 0 2248 95 0 22 chr1 34500048 34500364 -208163989 - AluSx SINE Alu -3 309 1 1150 165 5 36 chr1 34500468 34500692 -208163661 - AluJb SINE Alu -10 302 86 423 153 0 59 chr1 34500803 34500888 -208163465 + MER66B LTR ERV1 315 394 -92 686 223 7 0 chr1 34501297 34501436 -208162917 + FLAM_C SINE Alu 2 141 -2 2207 103 0 3 chr1 34502270 34502581 -208161772 - AluSg SINE Alu 0 310 1 499 104 26 0 chr1 34502584 34502661 -208161692 - Alu SINE Alu -11 301 223 466 81 0 0 chr1 34503054 34503139 -208161214 + Alu SINE Alu 220 304 0 2199 90 0 13 chr1 34503332 34503631 -208160722 - AluSx SINE Alu -17 295 1 267 277 36 36 chr1 34503662 34503725 -208160628 - MIR3 SINE MIR -6 202 137 3052 161 42 83 chr1 34503725 34504446 -208159907 + LTR8 LTR ERV1 1 691 0 267 277 36 36 chr1 34504446 34504465 -208159888 - MIR3 SINE MIR -70 138 120 1963 104 27 3 chr1 34504466 34504763 -208159590 + AluSq SINE Alu 3 306 -7 2549 177 103 21 chr1 34504779 34505305 -208159048 + MER67B LTR ERV1 93 661 0 1005 210 18 56 chr1 34505308 34505337 -208159016 + L1ME2 LINE L1 5874 5903 -261 1984 107 7 20 chr1 34505337 34505637 -208158716 + AluSg SINE Alu 1 296 -14 1005 210 18 56 chr1 34505637 34505893 -208158460 + L1ME2 LINE L1 5903 6148 -16 1771 143 0 17 chr1 34505896 34506190 -208158163 - AluSx SINE Alu -21 291 3 23 54 0 0 chr1 34506192 34506229 -208158124 + AT_rich Low_complexity Low_complexity 1 37 0 213 39 0 0 chr1 34506283 34506309 -208158044 + (T)n Simple_repeat Simple_repeat 1 26 0 1713 97 4 0 chr1 34506319 34506545 -208157808 - AluSc SINE Alu -82 227 1 674 164 22 0 chr1 34506552 34506686 -208157667 - Charlie1 DNA MER1_type -33 2728 2592 1793 163 0 3 chr1 34506686 34506980 -208157373 + AluSx SINE Alu 1 293 -19 1489 189 0 14 chr1 34507007 34507292 -208157061 + AluJo SINE Alu 1 281 -31 225 242 65 16 chr1 34507296 34507358 -208156995 - Charlie1a DNA MER1_type -1247 208 144 * 368 150 0 50 chr1 34507342 34507422 -208156931 - AluJ/FRAM SINE Alu 0 302 227 663 161 0 73 chr1 34507438 34507575 -208156778 - FRAM SINE Alu -38 138 12 819 195 32 0 chr1 34507575 34507729 -208156624 - Charlie1a DNA MER1_type -1291 164 6 333 235 141 0 chr1 34507734 34507819 -208156534 + L1ME3A LINE L1 6065 6161 -9 1861 148 7 10 chr1 34507829 34508133 -208156220 + AluSx SINE Alu 1 303 -9 554 189 0 0 chr1 34508133 34508228 -208156125 - FAM SINE Alu -30 155 61 528 146 256 82 chr1 34508249 34508291 -208156062 - Charlie1 DNA MER1_type -196 2565 2532 1350 217 17 17 chr1 34508291 34508586 -208155767 + AluJo SINE Alu 3 297 -5 528 146 256 82 chr1 34508586 34508762 -208155591 - Charlie1 DNA MER1_type -229 2532 2309 364 106 0 0 chr1 34508762 34508809 -208155544 + HY3 scRNA scRNA 1 47 -54 906 100 14 14 chr1 34509336 34509476 -208154877 + AluSg/x SINE Alu 154 293 -19 574 146 204 131 chr1 34509476 34509531 -208154822 + Charlie1 DNA MER1_type 2271 2321 -440 648 139 0 0 chr1 34509531 34509632 -208154721 - HY3 scRNA scRNA 0 101 1 574 146 204 131 chr1 34509632 34509808 -208154545 + Charlie1 DNA MER1_type 2321 2527 -234 1350 217 17 17 chr1 34509808 34510103 -208154250 - AluJo SINE Alu -5 297 3 574 146 204 131 chr1 34510103 34510145 -208154208 + Charlie1 DNA MER1_type 2527 2565 -196 582 179 0 0 chr1 34510166 34510261 -208154092 + FAM SINE Alu 61 155 -30 2033 137 0 10 chr1 34510261 34510567 -208153786 - AluSx SINE Alu -9 303 1 1709 170 0 3 chr1 34510664 34510952 -208153401 - AluSx SINE Alu -25 287 1 322 200 35 0 chr1 34510952 34511037 -208153316 + Charlie1 DNA MER1_type 2592 2679 -82 1230 189 111 18 chr1 34511618 34511680 -208152673 - MER4E LTR ERV1 -231 535 480 1985 118 3 13 chr1 34511680 34511985 -208152368 + AluSc SINE Alu 1 302 -7 1230 189 111 18 chr1 34511985 34512226 -208152127 - MER4E LTR ERV1 -286 480 219 1866 109 4 0 chr1 34512226 34512492 -208151861 - AluSx SINE Alu -5 307 41 724 84 0 11 chr1 34514355 34514450 -208149903 - AluY SINE Alu -207 104 11 287 182 0 0 chr1 34514450 34514494 -208149859 - AluSx SINE Alu -259 44 1 2099 113 7 3 chr1 34514511 34514812 -208149541 - AluSx SINE Alu -9 303 2 1824 104 7 7 chr1 34515745 34516015 -208148338 - AluSx SINE Alu -42 270 1 1351 180 70 0 chr1 34516301 34516401 -208147952 + AluJo SINE Alu 1 93 -219 4897 85 19 27 chr1 34516401 34517094 -208147259 + LTR8 LTR ERV1 5 691 0 1351 180 70 0 chr1 34517094 34517265 -208147088 + AluJo SINE Alu 93 291 -21 2142 102 10 0 chr1 34517265 34517559 -208146794 + AluSx SINE Alu 1 297 -15 1265 40 7 0 chr1 34517559 34517709 -208146644 - MER4E LTR ERV1 -615 151 1 609 14 0 0 chr1 34517758 34517828 -208146525 + (TTATA)n Simple_repeat Simple_repeat 3 72 0 1141 74 0 0 chr1 34517834 34517982 -208146371 - AluSg/x SINE Alu -20 292 145 1897 96 0 8 chr1 34517983 34518244 -208146109 + AluSc SINE Alu 34 292 -17 2230 86 3 0 chr1 34518473 34518765 -208145588 - AluSp SINE Alu -20 293 1 2226 98 0 0 chr1 34518839 34519134 -208145219 - AluSq SINE Alu -18 295 1 220 328 0 0 chr1 34519226 34519287 -208145066 - MIR3 SINE MIR -27 181 121 888 152 0 0 chr1 34519564 34519696 -208144657 + FLAM_C SINE Alu 2 133 0 2216 79 0 20 chr1 34519713 34520016 -208144337 + AluY SINE Alu 1 297 -14 1398 170 23 4 chr1 34520109 34520374 -208143979 - AluJb SINE Alu -6 306 37 2121 110 3 0 chr1 34520674 34520974 -208143379 - AluSg1 SINE Alu -8 301 1 379 253 86 52 chr1 34521054 34521228 -208143125 + Charlie8 DNA MER1_type 106 285 -2132 2233 107 3 3 chr1 34521630 34521940 -208142413 - AluSp SINE Alu -3 310 1 23 78 0 0 chr1 34521961 34522012 -208142341 + AT_rich Low_complexity Low_complexity 1 51 0 490 107 40 0 chr1 34522080 34522155 -208142198 + MER51A LTR ERV1 1 78 -556 1760 127 25 44 chr1 34522194 34522509 -208141844 + MER51A LTR ERV1 326 634 0 2027 128 0 3 chr1 34522561 34522858 -208141495 - AluJb SINE Alu -16 296 1 1954 129 0 10 chr1 34523208 34523510 -208140843 - AluSx SINE Alu -13 299 1 1759 160 14 7 chr1 34523817 34524105 -208140248 + AluJo SINE Alu 1 290 -22 2317 91 3 0 chr1 34524448 34524755 -208139598 + AluY SINE Alu 1 308 -3 219 330 110 10 chr1 34525475 34525575 -208138778 + MIR SINE MIR 36 145 -63 3119 124 37 8 chr1 34525576 34526067 -208138286 + L1PA15 LINE L1 5661 6165 0 779 296 182 9 chr1 34526533 34526962 -208137391 + L2 LINE L2 1079 1581 -1733 761 281 179 26 chr1 34526988 34527168 -208137185 + L2 LINE L2 2825 2976 -337 2608 106 8 19 chr1 34527168 34527545 -208136808 + THE1C LTR MaLR 1 373 -2 761 281 179 26 chr1 34527545 34527788 -208136565 + L2 LINE L2 2976 3313 0 2233 108 0 0 chr1 34527941 34528238 -208136115 + AluSx SINE Alu 1 297 -15 2117 105 10 13 chr1 34528271 34528584 -208135769 + AluSx SINE Alu 1 312 0 1882 114 40 4 chr1 34528591 34528903 -208135450 + AluSx SINE Alu 1 322 0 651 202 0 25 chr1 34528929 34529048 -208135305 + FLAM_A SINE Alu 10 125 -17 398 178 41 0 chr1 34529124 34529197 -208135156 + Tigger3(Golem) DNA MER2_type 1 76 -2953 2039 114 0 17 chr1 34529201 34529500 -208134853 - AluSg SINE Alu -14 296 3 290 73 0 0 chr1 34529960 34530001 -208134352 - MADE1 DNA Mariner -2 78 38 525 70 28 0 chr1 34530001 34530072 -208134281 + AluJ SINE Alu 63 135 -177 1323 140 45 5 chr1 34530072 34530294 -208134059 + AluJb SINE Alu 1 231 -81 888 187 27 0 chr1 34530330 34530480 -208133873 + AluJ SINE Alu 137 290 -12 2344 73 0 3 chr1 34530489 34530791 -208133562 + AluY SINE Alu 1 301 -10 804 136 8 0 chr1 34532438 34532563 -208131790 - AluSx SINE Alu -18 294 169 2177 93 3 7 chr1 34532574 34532865 -208131488 - AluSg SINE Alu -20 290 1 460 108 0 0 chr1 34532911 34532976 -208131377 - AluSx SINE Alu -16 296 232 1201 147 0 5 chr1 34532977 34533161 -208131192 - AluSx SINE Alu -124 188 6 2010 94 24 10 chr1 34533278 34533576 -208130777 + AluSp SINE Alu 1 302 -11 1637 144 52 14 chr1 34533580 34533871 -208130482 + AluJb SINE Alu 1 302 -10 2158 95 27 0 chr1 34534059 34534355 -208129998 + AluSx SINE Alu 1 304 -8 2260 76 0 3 chr1 34534356 34534647 -208129706 + AluY SINE Alu 2 291 -20 314 344 8 8 chr1 34534681 34534803 -208129550 - L3 LINE CR1 -760 817 696 2006 145 3 0 chr1 34534887 34535198 -208129155 - AluJo SINE Alu 0 312 1 2155 109 0 13 chr1 34535262 34535573 -208128780 - AluSc SINE Alu -2 307 1 2283 89 0 3 chr1 34535847 34536150 -208128203 - AluSg1 SINE Alu -7 302 1 451 228 102 36 chr1 34536464 34536532 -208127821 - MIR SINE MIR -26 236 174 2160 121 3 3 chr1 34536532 34536837 -208127516 + AluSq SINE Alu 1 305 -8 451 228 102 36 chr1 34536837 34536935 -208127418 - MIR SINE MIR -88 174 59 2023 115 3 0 chr1 34537037 34537332 -208127021 - AluSq SINE Alu -17 296 1 299 229 193 0 chr1 34537600 34537683 -208126670 - MIR SINE MIR -85 123 25 23 54 0 0 chr1 34538727 34538764 -208125589 + GC_rich Low_complexity Low_complexity 1 37 0 29 47 0 0 chr1 34538816 34538859 -208125494 + GC_rich Low_complexity Low_complexity 1 43 0 28 0 0 0 chr1 34538885 34538913 -208125440 + GC_rich Low_complexity Low_complexity 1 28 0 201 284 18 9 chr1 34539827 34539936 -208124417 + (TG)n Simple_repeat Simple_repeat 1 110 0 318 231 120 46 chr1 34540451 34540547 -208123806 + L2 LINE L2 2829 2916 -356 1924 166 0 3 chr1 34540547 34540860 -208123493 - AluJo SINE Alu 0 312 1 318 231 120 46 chr1 34540860 34540979 -208123374 + L2 LINE L2 2916 3060 -212 783 135 0 45 chr1 34541040 34541173 -208123180 - FLAM_C SINE Alu -11 132 6 742 213 17 70 chr1 34541176 34541251 -208123102 + L2 LINE L2 3084 3161 -152 2333 76 0 3 chr1 34541251 34541552 -208122801 - AluY SINE Alu -11 300 1 742 213 17 70 chr1 34541552 34541706 -208122647 + L2 LINE L2 3161 3301 -12 2505 224 36 13 chr1 34541714 34542245 -208122108 - MLT1G1 LTR MaLR -50 545 3 314 207 17 0 chr1 34542381 34542439 -208121914 - MLT1J LTR MaLR -325 186 128 * 860 161 78 61 chr1 34542409 34542589 -208121764 - MER21B LTR ERV1 -335 596 329 1354 225 98 56 chr1 34543196 34543343 -208121010 + LTR33 LTR ERVL 43 182 -339 2027 131 0 34 chr1 34543343 34543663 -208120690 - AluSx SINE Alu -3 309 1 1354 225 98 56 chr1 34543663 34543964 -208120389 + LTR33 LTR ERVL 182 510 -11 839 236 23 50 chr1 34543997 34544217 -208120136 + AluJo SINE Alu 89 302 -10 1060 81 0 0 chr1 34544225 34544361 -208119992 + AluSq/x SINE Alu 1 136 -177 2297 74 3 0 chr1 34544361 34544698 -208119655 + AluY SINE Alu 1 311 0 2175 119 0 3 chr1 34544702 34545013 -208119340 + AluSq SINE Alu 1 310 -3 260 250 83 67 chr1 34545288 34545408 -208118945 + MIR SINE MIR 81 202 -60 1623 110 103 7 chr1 34545493 34545765 -208118588 - AluSq SINE Alu -15 298 1 354 156 31 0 chr1 34545863 34545927 -208118426 - AluJo SINE Alu -4 298 233 868 158 0 87 chr1 34545928 34546112 -208118241 - AluJo SINE Alu -144 168 1 343 277 27 18 chr1 34546126 34546238 -208118115 + MIR SINE MIR 39 151 -111 2384 75 3 0 chr1 34546239 34546546 -208117807 + AluSp SINE Alu 1 308 -5 556 275 5 68 chr1 34546894 34546931 -208117422 - MIR SINE MIR -15 247 209 2173 111 0 0 chr1 34546931 34547229 -208117124 - AluSx SINE Alu -12 300 3 556 275 5 68 chr1 34547229 34547398 -208116955 - MIR SINE MIR -53 209 54 235 250 0 0 chr1 34547522 34547578 -208116775 + MIR SINE MIR 60 115 -147 2541 52 0 0 chr1 34547585 34547894 -208116459 - AluY SINE Alu -2 309 1 251 237 11 75 chr1 34547971 34548064 -208116289 + MIR SINE MIR 47 133 -75 209 273 5 70 chr1 34548869 34548886 -208115467 + (CATATA)n Simple_repeat Simple_repeat 6 23 -157 1473 162 42 32 chr1 34548886 34549026 -208115327 + AluJo SINE Alu 1 138 -174 2205 88 0 7 chr1 34549026 34549323 -208115030 + AluSq SINE Alu 1 295 -18 1473 162 42 32 chr1 34549323 34549466 -208114887 + AluJo SINE Alu 138 287 -25 209 273 5 70 chr1 34549466 34549495 -208114858 + (CATATA)n Simple_repeat Simple_repeat 23 52 -128 2169 91 0 17 chr1 34549495 34549631 -208114722 + AluSp SINE Alu 2 139 -174 2447 57 0 0 chr1 34549631 34549929 -208114424 + AluY SINE Alu 1 298 -13 2169 91 0 17 chr1 34549929 34550109 -208114244 + AluSp SINE Alu 139 313 0 209 273 5 70 chr1 34550109 34550118 -208114235 + (CATATA)n Simple_repeat Simple_repeat 52 60 -120 2046 142 0 3 chr1 34550118 34550428 -208113925 + AluSg SINE Alu 1 309 -1 334 318 13 0 chr1 34550428 34550579 -208113774 + (CA)n Simple_repeat Simple_repeat 1 153 0 2028 68 82 11 chr1 34550632 34550911 -208113442 + AluY SINE Alu 1 299 -12 195 341 40 32 chr1 34551015 34551141 -208113212 - MIR SINE MIR -6 256 130 2112 90 41 3 chr1 34551279 34551569 -208112784 - AluSg SINE Alu -9 301 1 2343 75 7 0 chr1 34551569 34551874 -208112479 - AluSp SINE Alu -6 307 1 355 287 46 9 chr1 34551945 34552053 -208112300 - MIR SINE MIR -81 127 16 1358 143 0 18 chr1 34552368 34552592 -208111761 - AluJb SINE Alu -8 304 85 487 236 49 21 chr1 34553410 34553554 -208110799 - MIR SINE MIR -51 211 64 323 321 22 92 chr1 34553724 34553838 -208110515 + L2 LINE L2 2968 3088 -184 2295 82 3 3 chr1 34553838 34554143 -208110210 - AluSp SINE Alu -8 305 1 323 321 22 92 chr1 34554143 34554299 -208110054 + L2 LINE L2 3088 3219 -53 560 296 155 5 chr1 34554551 34554757 -208109596 - MIR SINE MIR -25 237 1 2263 89 0 7 chr1 34554780 34555083 -208109270 + AluSq SINE Alu 1 301 -12 2764 13 0 0 chr1 34555083 34555394 -208108959 + AluYa5 SINE Alu 1 311 0 1914 122 7 4 chr1 34555440 34555749 -208108604 + AluSg SINE Alu 2 311 0 2395 69 0 0 chr1 34555749 34556053 -208108300 + AluY SINE Alu 1 304 -7 2092 101 18 0 chr1 34556169 34556455 -208107898 + AluSx SINE Alu 2 292 -20 289 288 171 0 chr1 34557244 34557355 -208106998 - MIR SINE MIR -52 210 81 212 179 0 0 chr1 34557797 34557836 -208106517 + MIR SINE MIR 76 114 -94 2257 89 3 0 chr1 34557920 34558213 -208106140 - AluSg1 SINE Alu -13 296 3 1435 165 25 79 chr1 34558215 34558373 -208105980 - AluSq SINE Alu -14 299 165 1977 106 30 20 chr1 34558373 34558675 -208105678 - AluSp SINE Alu -8 305 1 1435 165 25 79 chr1 34558675 34558832 -208105521 - AluSq SINE Alu -148 165 1 1106 115 0 0 chr1 34558918 34559075 -208105278 - AluSg/x SINE Alu 0 312 156 1491 178 6 62 chr1 34559140 34559323 -208105030 - AluJb SINE Alu 0 312 120 309 51 0 0 chr1 34559323 34559362 -208104991 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2371 65 0 0 chr1 34559362 34559653 -208104700 - AluY SINE Alu -20 291 1 1491 178 6 62 chr1 34559653 34559788 -208104565 - AluJb SINE Alu -190 122 11 585 172 0 28 chr1 34559815 34559960 -208104393 + CT-rich Low_complexity Low_complexity 4 144 0 841 165 82 6 chr1 34559981 34560139 -208104214 - FRAM SINE Alu -1 175 6 252 188 21 0 chr1 34560261 34560309 -208104044 + MIR3 SINE MIR 109 157 -51 291 293 13 0 chr1 34560365 34560440 -208103913 + MER117 DNA MER1_type 96 171 -26 1413 177 71 3 chr1 34560960 34561243 -208103110 + AluSx SINE Alu 1 302 0 412 260 10 10 chr1 34564243 34564343 -208100010 + MIR SINE MIR 19 118 -144 1878 138 10 3 chr1 34564515 34564811 -208099542 + AluJb SINE Alu 2 299 -13 226 254 56 0 chr1 34564836 34564907 -208099446 + MIR3 SINE MIR 89 163 -45 192 307 61 35 chr1 34565810 34565924 -208098429 + MIR3 SINE MIR 14 130 -78 513 252 56 0 chr1 34566089 34566232 -208098121 + MIR SINE MIR 61 211 -51 189 0 0 0 chr1 34566414 34566435 -208097918 + (CAGCC)n Simple_repeat Simple_repeat 1 21 0 2355 57 27 0 chr1 34566833 34567129 -208097224 + AluSp SINE Alu 3 306 -7 2213 85 10 0 chr1 34567129 34567422 -208096931 + AluSq SINE Alu 1 296 -17 2108 121 3 0 chr1 34567432 34567730 -208096623 + AluSq SINE Alu 2 300 -13 221 184 20 0 chr1 34567856 34567905 -208096448 + (TG)n Simple_repeat Simple_repeat 1 50 0 1769 103 0 129 chr1 34568106 34568447 -208095906 + AluSx SINE Alu 2 298 -14 2226 69 0 28 chr1 34568448 34568767 -208095586 + AluY SINE Alu 1 310 -1 321 264 124 47 chr1 34568798 34568927 -208095426 - L2 LINE L2 -220 3052 2914 2288 68 0 19 chr1 34569377 34569685 -208094668 + AluY SINE Alu 1 302 -9 24 32 0 0 chr1 34569967 34569998 -208094355 + GC_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr1 34570007 34570042 -208094311 + GC_rich Low_complexity Low_complexity 1 35 0 257 333 155 46 chr1 34570196 34570303 -208094050 - MIR SINE MIR -10 252 158 2290 97 0 0 chr1 34570303 34570603 -208093750 + AluSx SINE Alu 1 300 -12 2379 79 0 0 chr1 34570605 34570909 -208093444 + AluY SINE Alu 1 304 -7 257 333 155 46 chr1 34570909 34570972 -208093381 - MIR SINE MIR -104 158 60 556 275 5 68 chr1 34571096 34571265 -208093088 + MIR SINE MIR 54 209 -53 2209 110 0 0 chr1 34571265 34571566 -208092787 + AluSx SINE Alu 3 303 -9 556 275 5 68 chr1 34571566 34571603 -208092750 + MIR SINE MIR 209 247 -15 2516 75 3 0 chr1 34571951 34572258 -208092095 - AluSp SINE Alu -5 308 1 364 228 29 28 chr1 34572259 34572371 -208091982 - MIR SINE MIR -63 145 39 348 141 8 67 chr1 34572384 34572633 -208091720 + AluJo SINE Alu 1 298 -4 1731 110 103 7 chr1 34572731 34573003 -208091350 + AluSq SINE Alu 1 298 -15 338 217 83 67 chr1 34573088 34573208 -208091145 - MIR SINE MIR -60 202 81 2383 113 0 0 chr1 34573483 34573793 -208090560 - AluSq SINE Alu -3 310 1 2441 64 3 0 chr1 34573797 34574132 -208090221 - AluY SINE Alu 0 311 1 1116 81 0 0 chr1 34574132 34574268 -208090085 - AluSq/x SINE Alu -177 136 1 801 200 0 44 chr1 34574290 34574450 -208089903 - FRAM SINE Alu -24 152 1 1229 217 101 58 chr1 34574529 34574830 -208089523 - LTR33 LTR ERVL -11 510 183 2160 128 0 34 chr1 34574830 34575150 -208089203 + AluSx SINE Alu 1 309 -3 1229 217 101 58 chr1 34575150 34575282 -208089071 - LTR33 LTR ERVL -338 183 58 856 156 78 61 chr1 34575904 34576084 -208088269 + MER21B LTR ERV1 329 596 -335 319 190 17 0 chr1 34576054 34576112 -208088241 + MLT1J LTR MaLR 128 186 -325 * 2394 226 36 13 chr1 34576248 34576779 -208087574 + MLT1G1 LTR MaLR 3 545 -50 790 209 17 70 chr1 34576787 34576941 -208087412 - L2 LINE L2 -12 3301 3161 2460 76 0 3 chr1 34576941 34577242 -208087111 + AluY SINE Alu 1 300 -11 790 209 17 70 chr1 34577242 34577317 -208087036 - L2 LINE L2 -152 3161 3084 784 161 0 0 chr1 34577320 34577438 -208086915 + FLAM_C SINE Alu 6 123 -20 250 237 0 17 chr1 34577509 34577568 -208086785 + AluSp/q SINE Alu 230 287 -16 2364 88 3 0 chr1 34578113 34578407 -208085946 - AluSp SINE Alu -18 295 1 2370 98 0 0 chr1 34578481 34578776 -208085577 - AluSq SINE Alu -18 295 1 221 328 0 0 chr1 34578868 34578929 -208085424 - MIR3 SINE MIR -27 181 121 906 152 0 0 chr1 34579206 34579338 -208085015 + FLAM_C SINE Alu 2 133 0 2347 80 0 20 chr1 34579355 34579657 -208084696 + AluY SINE Alu 1 296 -15 1543 171 19 4 chr1 34579750 34580013 -208084340 - AluJb SINE Alu -7 305 39 2271 110 3 0 chr1 34580314 34580614 -208083739 - AluSg1 SINE Alu -8 301 1 333 249 112 16 chr1 34580694 34580868 -208083485 + Charlie8 DNA MER1_type 95 285 -2132 2340 110 3 3 chr1 34581270 34581580 -208082773 - AluSp SINE Alu -3 310 1 23 78 0 0 chr1 34581601 34581652 -208082701 + AT_rich Low_complexity Low_complexity 1 51 0 481 107 40 0 chr1 34581720 34581795 -208082558 + MER51A LTR ERV1 1 78 -556 1642 138 29 45 chr1 34581836 34582148 -208082205 + MER51A LTR ERV1 328 634 0 2148 128 0 3 chr1 34582200 34582497 -208081856 - AluJb SINE Alu -16 296 1 2074 129 0 10 chr1 34582847 34583149 -208081204 - AluSx SINE Alu -13 299 1 1879 160 14 7 chr1 34583456 34583744 -208080609 + AluJo SINE Alu 1 290 -22 2457 88 3 0 chr1 34584085 34584392 -208079961 + AluY SINE Alu 1 308 -3 236 330 110 10 chr1 34585112 34585212 -208079141 + MIR SINE MIR 36 145 -63 3071 124 37 8 chr1 34585213 34585704 -208078649 + L1PA15 LINE L1 5661 6165 0 195 203 0 102 chr1 34586008 34586067 -208078286 + MIR3 SINE MIR 152 204 -4 867 296 182 9 chr1 34586169 34586598 -208077755 + L2 LINE L2 1079 1581 -1733 852 276 179 26 chr1 34586624 34586804 -208077549 + L2 LINE L2 2825 2976 -337 2576 106 8 19 chr1 34586804 34587181 -208077172 + THE1C LTR MaLR 1 373 -2 852 276 179 26 chr1 34587181 34587424 -208076929 + L2 LINE L2 2976 3313 0 2383 102 0 0 chr1 34587577 34587872 -208076481 + AluSx SINE Alu 1 295 -17 2254 98 9 22 chr1 34587907 34588222 -208076131 + AluSx SINE Alu 1 311 -1 1999 114 40 4 chr1 34588227 34588544 -208075809 + AluSx SINE Alu 1 327 0 663 193 0 25 chr1 34588570 34588689 -208075664 + FLAM_A SINE Alu 10 125 -17 398 204 36 16 chr1 34588765 34588841 -208075512 + Tigger3(Golem) DNA MER2_type 1 74 -2964 2375 80 7 7 chr1 34588841 34589141 -208075212 - AluSq SINE Alu -13 300 1 398 204 36 16 chr1 34589141 34589180 -208075173 + Tigger3(Golem) DNA MER2_type 74 2804 -234 1523 191 16 44 chr1 34589197 34589516 -208074837 + AluJo SINE Alu 3 312 0 1175 143 85 98 chr1 34589537 34589576 -208074777 + AluJb SINE Alu 9 47 -265 4447 50 7 4 chr1 34589576 34590132 -208074221 + LTR6B LTR ERV1 1 558 0 1175 143 85 98 chr1 34590132 34590247 -208074106 + AluJb SINE Alu 47 162 -150 2081 91 0 4 chr1 34590247 34590512 -208073841 + AluSg SINE Alu 1 264 -46 1175 143 85 98 chr1 34590512 34590663 -208073690 + AluJb SINE Alu 162 311 -1 2295 106 0 7 chr1 34590668 34590971 -208073382 + AluSp SINE Alu 1 301 -12 2196 109 3 3 chr1 34590971 34591264 -208073089 + AluSx SINE Alu 1 293 -19 2324 116 0 3 chr1 34591273 34591583 -208072770 + AluSg SINE Alu 1 309 -1 454 209 22 0 chr1 34591775 34591866 -208072487 + HY4 scRNA scRNA 1 93 0 752 52 0 21 chr1 34591866 34591962 -208072391 + AluY SINE Alu 70 163 -148 2388 65 0 7 chr1 34592161 34592453 -208071900 - AluSc SINE Alu -19 290 1 2143 116 3 3 chr1 34592462 34592755 -208071598 - AluSx SINE Alu -19 293 1 2295 106 0 7 chr1 34592755 34593058 -208071295 - AluSp SINE Alu -12 301 1 1135 150 85 98 chr1 34593063 34593214 -208071139 - AluJb SINE Alu -1 311 160 2081 91 0 4 chr1 34593214 34593479 -208070874 - AluSg SINE Alu -46 264 1 1135 150 85 98 chr1 34593479 34593594 -208070759 - AluJb SINE Alu -152 160 47 4447 50 7 4 chr1 34593594 34594150 -208070203 - LTR6B LTR ERV1 0 558 1 1135 150 85 98 chr1 34594150 34594189 -208070164 - AluJb SINE Alu -265 47 9 1525 187 16 44 chr1 34594213 34594528 -208069825 - AluJo SINE Alu -4 308 3 30 0 0 0 chr1 34594551 34594581 -208069772 + AT_rich Low_complexity Low_complexity 1 30 0 2402 83 0 0 chr1 34594584 34594874 -208069479 + AluSc SINE Alu 1 290 -19 1624 189 0 14 chr1 34594901 34595186 -208069167 + AluJo SINE Alu 1 281 -31 342 150 0 50 chr1 34595236 34595316 -208069037 - AluJ/FRAM SINE Alu 0 302 227 684 161 0 73 chr1 34595332 34595469 -208068884 - FRAM SINE Alu -38 138 12 788 188 32 0 chr1 34595469 34595623 -208068730 - Charlie1a DNA MER1_type -1291 164 6 318 235 141 0 chr1 34595628 34595713 -208068640 + L1ME3A LINE L1 6065 6161 -9 1989 148 10 10 chr1 34595723 34596020 -208068333 + AluSx SINE Alu 1 297 -15 2138 58 0 4 chr1 34596064 34596322 -208068031 - AluY SINE Alu -4 307 51 2332 104 0 16 chr1 34596438 34596755 -208067598 + AluSx SINE Alu 1 312 0 1248 81 11 75 chr1 34596762 34596948 -208067405 + AluSp SINE Alu 2 175 -138 969 223 0 0 chr1 34596970 34597136 -208067217 + FRAM SINE Alu 1 166 0 3236 123 64 10 chr1 34597156 34597654 -208066699 + MER1A DNA MER1_type 3 527 0 888 264 79 58 chr1 34597717 34598199 -208066154 + L1MC/D LINE L1 5296 5787 -2021 2349 81 0 17 chr1 34598346 34598642 -208065711 - AluSx SINE Alu -21 291 1 2376 89 7 3 chr1 34598642 34598945 -208065408 - AluSx SINE Alu -8 304 1 220 242 0 61 chr1 34599173 34599239 -208065114 - MIR SINE MIR -86 122 61 449 103 0 29 chr1 34599241 34599309 -208065044 + AluJ/FRAM SINE Alu 220 285 -27 306 0 0 0 chr1 34599309 34599343 -208065010 + (CA)n Simple_repeat Simple_repeat 2 35 0 2485 51 10 0 chr1 34599343 34599637 -208064716 - AluSp SINE Alu -16 297 1 591 180 63 0 chr1 34602044 34602155 -208062198 + AluJb SINE Alu 2 119 -193 2216 95 0 16 chr1 34602214 34602519 -208061834 - AluSx SINE Alu -12 300 1 203 354 31 0 chr1 34602553 34602618 -208061735 - L2 LINE L2 -89 3183 3117 2551 65 3 0 chr1 34603317 34603627 -208060726 - AluY SINE Alu 0 311 1 1793 151 0 17 chr1 34603760 34604059 -208060294 + AluJb SINE Alu 1 294 -18 2279 101 0 25 chr1 34604347 34604664 -208059689 - AluSq SINE Alu -4 309 1 1642 163 58 11 chr1 34604669 34604946 -208059407 - AluJo SINE Alu -22 290 1 751 239 25 6 chr1 34605525 34605688 -208058665 - MER5A DNA MER1_type 0 189 24 234 289 10 45 chr1 34605778 34605845 -208058508 + MIR SINE MIR 36 107 -102 1024 121 0 42 chr1 34605847 34606013 -208058340 - AluSx SINE Alu 0 312 154 2279 114 3 0 chr1 34606016 34606322 -208058031 - AluSx SINE Alu -5 307 1 208 280 0 27 chr1 34606433 34606508 -208057845 + T-rich Low_complexity Low_complexity 2 74 0 684 185 0 0 chr1 34606664 34606783 -208057570 + AluSq/x SINE Alu 2 120 -193 1140 104 0 0 chr1 34607015 34607159 -208057194 - AluSx SINE Alu -168 144 1 1586 112 50 8 chr1 34607159 34607418 -208056935 + Tigger3(Golem) DNA MER2_type 2760 3029 0 1198 194 49 74 chr1 34607440 34607524 -208056829 + MER58B DNA MER1_type 1 86 -2334 2271 119 3 0 chr1 34607524 34607835 -208056518 - AluSx SINE Alu 0 312 1 1198 194 49 74 chr1 34607835 34608100 -208056253 + MER58B DNA MER1_type 86 341 0 266 309 111 6 chr1 34608152 34608314 -208056039 - MIR3 SINE MIR 0 208 30 1715 159 10 34 chr1 34608741 34609037 -208055316 + AluJo SINE Alu 1 289 -23 2138 111 3 41 chr1 34609049 34609364 -208054989 + AluSx SINE Alu 1 303 -9 2184 107 10 0 chr1 34609927 34610216 -208054137 - AluSx SINE Alu -16 296 5 521 200 96 78 chr1 34610228 34610458 -208053895 + MER106A DNA MER1_type 2 235 -1 1976 102 0 4 chr1 34610614 34610868 -208053485 - AluSx SINE Alu -10 302 50 408 277 31 0 chr1 34610926 34611085 -208053268 + (TA)n Simple_repeat Simple_repeat 1 164 0 318 319 35 26 chr1 34611094 34611210 -208053143 + L1MC4 LINE L1 6593 6709 -1333 210 288 25 0 chr1 34611210 34611290 -208053063 + (TA)n Simple_repeat Simple_repeat 1 82 0 2131 119 3 16 chr1 34611346 34611649 -208052704 + AluSq SINE Alu 1 299 -14 186 227 68 0 chr1 34611724 34611768 -208052585 - L2 LINE L2 -2 3311 3265 245 270 212 0 chr1 34611794 34611931 -208052422 - L1MC/D LINE L1 -1922 5886 5721 353 283 87 14 chr1 34611968 34612106 -208052247 - L1MC/D LINE L1 -484 5637 5490 776 212 34 0 chr1 34612324 34612470 -208051883 - AluJo/FRAM SINE Alu -14 288 138 1375 138 28 36 chr1 34612471 34612756 -208051597 - AluSx SINE Alu 0 312 40 1685 192 0 13 chr1 34612890 34613192 -208051161 - AluJb SINE Alu -14 298 1 2546 117 26 20 chr1 34613199 34613370 -208050983 - L1P4 LINE L1 -391 5775 5607 2156 116 26 0 chr1 34613370 34613673 -208050680 - AluSp SINE Alu -2 311 1 2546 117 26 20 chr1 34613673 34613956 -208050397 - L1P4 LINE L1 -559 5607 5318 2268 112 7 0 chr1 34613956 34614261 -208050092 - AluSc SINE Alu 0 309 3 1092 112 39 22 chr1 34614264 34614443 -208049910 - AluSg/x SINE Alu 0 312 131 216 0 0 0 chr1 34614443 34614467 -208049886 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2274 95 11 0 chr1 34614468 34614753 -208049600 - AluSq SINE Alu -25 288 1 1323 52 0 0 chr1 34614900 34615054 -208049299 + AluSp/q SINE Alu 156 309 -4 1991 199 42 58 chr1 34615064 34615522 -208048831 - L1ME1 LINE L1 -132 6034 5585 2504 59 23 0 chr1 34615522 34615826 -208048527 + AluY SINE Alu 1 311 0 1991 199 42 58 chr1 34615826 34615940 -208048413 - L1ME1 LINE L1 -581 5585 5471 2602 140 26 84 chr1 34615954 34616023 -208048330 - L1MB3 LINE L1 -2 6181 6110 2468 87 0 0 chr1 34616023 34616321 -208048032 + AluSq SINE Alu 1 298 -15 2602 140 26 84 chr1 34616321 34616422 -208047931 - L1MB3 LINE L1 -73 6110 6005 657 231 8 8 chr1 34616422 34616552 -208047801 - FLAM_A SINE Alu 0 133 4 2602 140 26 84 chr1 34616552 34616986 -208047367 - L1MB3 LINE L1 -178 6005 5611 1394 204 74 11 chr1 34616986 34617270 -208047083 - AluJo SINE Alu -8 304 3 1153 164 29 24 chr1 34617274 34617441 -208046912 - AluJb SINE Alu -6 306 136 2312 117 0 3 chr1 34617441 34617748 -208046605 - AluSx SINE Alu -6 306 1 1153 164 29 24 chr1 34617748 34617788 -208046565 - AluJb SINE Alu -176 136 98 1642 129 0 4 chr1 34617808 34618040 -208046313 - AluSg/x SINE Alu -2 310 80 1629 96 9 0 chr1 34618140 34618358 -208045995 + AluSg/x SINE Alu 90 309 -3 417 220 60 0 chr1 34618360 34618460 -208045893 + MIR SINE MIR 157 262 0 21 36 0 0 chr1 34618866 34618894 -208045459 + GC_rich Low_complexity Low_complexity 1 28 0 214 242 15 15 chr1 34619728 34619794 -208044559 + C-rich Low_complexity Low_complexity 6 71 0 266 283 59 86 chr1 34620278 34620465 -208043888 + MIR3 SINE MIR 7 188 -20 279 204 56 0 chr1 34620469 34620523 -208043830 - MIR SINE MIR -65 143 87 1808 152 9 47 chr1 34621212 34621534 -208042819 + AluJb SINE Alu 1 310 -2 2286 120 0 0 chr1 34621536 34621835 -208042518 + AluSq SINE Alu 1 299 -14 213 292 54 77 chr1 34622108 34622406 -208041947 - L2 LINE L2 -556 2758 2468 648 268 31 36 chr1 34622482 34622676 -208041677 - MIR SINE MIR -55 207 15 185 200 0 0 chr1 34623175 34623210 -208041143 - MIR SINE MIR -110 152 118 386 298 28 14 chr1 34623560 34623701 -208040652 - MIR3 SINE MIR -30 178 36 348 222 61 10 chr1 34623899 34623998 -208040355 + MIR SINE MIR 7 110 -152 310 273 223 7 chr1 34624033 34624174 -208040179 - MIR SINE MIR -63 145 15 299 292 35 58 chr1 34624642 34624813 -208039540 + MIR SINE MIR 58 224 -38 2344 97 0 0 chr1 34625438 34625738 -208038615 - AluSg SINE Alu -10 300 1 184 280 0 0 chr1 34626043 34626093 -208038260 + MIR SINE MIR 84 133 -75 223 307 148 11 chr1 34626528 34626616 -208037737 + L2 LINE L2 3156 3255 -17 377 269 51 69 chr1 34626786 34626961 -208037392 + MIR SINE MIR 7 178 -84 651 159 0 0 chr1 34627302 34627415 -208036938 - FRAM SINE Alu -2 174 62 2337 92 0 13 chr1 34627433 34627737 -208036616 - AluSg SINE Alu -10 300 1 586 113 0 0 chr1 34627738 34627818 -208036535 - AluS SINE Alu -227 86 7 2295 115 0 10 chr1 34627828 34628133 -208036220 - AluSx SINE Alu -10 302 1 618 234 78 6 chr1 34628161 34628408 -208035945 + L2 LINE L2 2774 3036 -277 2416 90 7 7 chr1 34628413 34628723 -208035630 - AluSx SINE Alu -2 310 1 1526 192 4 4 chr1 34628744 34629010 -208035343 - AluJb SINE Alu -46 266 1 325 221 48 58 chr1 34629140 34629244 -208035109 - L2 LINE L2 0 3313 3211 2217 115 0 16 chr1 34629310 34629614 -208034739 - AluSx SINE Alu -5 307 9 309 242 39 112 chr1 34631235 34631413 -208032940 + MIR3 SINE MIR 24 188 -20 186 103 0 0 chr1 34632817 34632846 -208031507 + (TCCCC)n Simple_repeat Simple_repeat 2 30 0 234 267 103 35 chr1 34632990 34633106 -208031247 + MIR3 SINE MIR 58 181 -27 1923 135 35 3 chr1 34633164 34633446 -208030907 + AluSq SINE Alu 1 291 -22 2511 63 0 13 chr1 34633821 34634124 -208030229 + AluY SINE Alu 1 299 -12 319 255 112 58 chr1 34634124 34634326 -208030027 + MIR SINE MIR 37 262 0 319 194 45 0 chr1 34634360 34634427 -208029926 - MER103 DNA DNA -94 72 3 21 57 0 0 chr1 34639679 34639714 -208024639 + AT_rich Low_complexity Low_complexity 1 35 0 2317 82 3 17 chr1 34641005 34641299 -208023054 - AluSp SINE Alu -23 290 1 356 275 124 43 chr1 34641304 34641537 -208022816 + L1ME LINE L1 5521 5772 -349 2231 107 0 3 chr1 34641538 34641829 -208022524 + AluY SINE Alu 2 291 -20 2254 125 3 0 chr1 34641885 34642180 -208022173 - AluSp SINE Alu -16 297 2 2364 82 10 0 chr1 34642190 34642483 -208021870 - AluSq SINE Alu -17 296 1 2337 77 7 16 chr1 34642483 34642793 -208021560 - AluSq SINE Alu -6 307 1 2505 74 3 0 chr1 34643594 34643904 -208020449 - AluY SINE Alu 0 311 1 1810 151 0 17 chr1 34644037 34644336 -208020017 + AluJb SINE Alu 1 294 -18 2292 101 0 25 chr1 34644624 34644941 -208019412 - AluSq SINE Alu -4 309 1 1653 163 58 11 chr1 34644946 34645223 -208019130 - AluJo SINE Alu -22 290 1 701 239 25 6 chr1 34645802 34645965 -208018388 - MER5A DNA MER1_type 0 189 24 219 283 0 50 chr1 34646062 34646122 -208018231 + MIR SINE MIR 51 107 -155 1024 121 0 42 chr1 34646124 34646290 -208018063 - AluSg/x SINE Alu 0 310 152 2282 115 3 0 chr1 34646293 34646598 -208017755 - AluSx SINE Alu -6 306 1 208 280 0 27 chr1 34646710 34646785 -208017568 + T-rich Low_complexity Low_complexity 2 74 0 2081 152 0 0 chr1 34646940 34647243 -208017110 + AluSx SINE Alu 1 303 -9 2140 118 10 0 chr1 34647806 34648095 -208016258 - AluSx SINE Alu -16 296 5 466 200 96 78 chr1 34648107 34648337 -208016016 + MER106A DNA MER1_type 2 235 -1 1985 102 0 4 chr1 34648493 34648747 -208015606 - AluSx SINE Alu -10 302 50 390 280 32 0 chr1 34648805 34648962 -208015391 + (TA)n Simple_repeat Simple_repeat 1 162 0 300 280 54 32 chr1 34648990 34649083 -208015270 + L1MC4 LINE L1 6615 6709 -1333 210 288 25 0 chr1 34649083 34649163 -208015190 + (TA)n Simple_repeat Simple_repeat 1 82 0 2156 120 3 16 chr1 34649219 34649527 -208014826 + AluSq SINE Alu 1 304 -9 255 270 212 0 chr1 34649672 34649809 -208014544 - L1MC/D LINE L1 -1922 5886 5721 371 290 85 14 chr1 34649829 34649984 -208014369 - L1MC/D LINE L1 -484 5637 5490 715 212 34 0 chr1 34650202 34650348 -208014005 - AluJo/FRAM SINE Alu -14 288 138 1384 137 28 39 chr1 34650349 34650636 -208013717 - AluSx SINE Alu 0 312 40 1698 192 0 13 chr1 34650770 34651072 -208013281 - AluJb SINE Alu -14 298 1 2478 128 26 20 chr1 34651079 34651250 -208013103 - L1P4 LINE L1 -391 5775 5607 2090 119 26 3 chr1 34651250 34651553 -208012800 - AluSp SINE Alu -3 310 1 2478 128 26 20 chr1 34651553 34651835 -208012518 - L1P4 LINE L1 -559 5607 5319 2273 112 7 0 chr1 34651835 34652140 -208012213 - AluSc SINE Alu 0 309 3 2009 130 23 13 chr1 34652143 34652450 -208011903 - AluSg SINE Alu 0 310 1 2204 114 16 3 chr1 34652578 34652884 -208011469 - AluSx SINE Alu -2 310 1 269 153 153 0 chr1 34653122 34653194 -208011159 + MIR3 SINE MIR 101 183 -25 189 192 0 77 chr1 34653265 34653317 -208011036 + MIR SINE MIR 92 139 -69 22 70 0 0 chr1 34655584 34655627 -208008726 + GC_rich Low_complexity Low_complexity 1 43 0 37 109 0 0 chr1 34655704 34655860 -208008493 + GC_rich Low_complexity Low_complexity 1 156 0 282 209 23 39 chr1 34655870 34655999 -208008354 + (CGGGG)n Simple_repeat Simple_repeat 2 128 0 2259 113 0 0 chr1 34657511 34657812 -208006541 + AluSx SINE Alu 2 302 -10 1245 165 3 123 chr1 34657815 34658149 -208006204 + AluSx SINE Alu 2 295 -7 2194 98 0 20 chr1 34658149 34658285 -208006068 + AluSg1 SINE Alu 1 138 -171 2434 92 3 0 chr1 34658285 34658590 -208005763 + AluSp SINE Alu 1 306 -7 2194 98 0 20 chr1 34658590 34658749 -208005604 + AluSg1 SINE Alu 138 290 -19 430 272 11 0 chr1 34658751 34658843 -208005510 - MER45 DNA AcHobo -947 93 1 1070 93 0 0 chr1 34660125 34660264 -208004089 + AluSc SINE Alu 162 300 -9 2506 77 0 6 chr1 34660293 34660605 -208003748 - AluY SINE Alu -1 310 1 2087 129 3 7 chr1 34660606 34660900 -208003453 - AluSg1 SINE Alu -16 293 1 2361 80 3 0 chr1 34660977 34661266 -208003087 + AluSg SINE Alu 1 290 -20 2220 118 0 0 chr1 34661328 34661615 -208002738 + AluSg SINE Alu 1 287 -23 2226 99 7 0 chr1 34661622 34661948 -208002405 + AluSp SINE Alu 1 328 0 1085 269 134 31 chr1 34662623 34662704 -208001649 + L1MCa LINE L1 875 946 -5661 2298 78 35 0 chr1 34662704 34663025 -208001328 + AluY SINE Alu 1 311 0 1085 269 134 31 chr1 34663025 34663456 -208000897 + L1MCa LINE L1 946 1331 -5276 1710 178 24 10 chr1 34663456 34663754 -208000599 + AluJb SINE Alu 1 302 -10 1085 269 134 31 chr1 34663754 34664141 -208000212 + L1MCa LINE L1 1331 2033 -4574 2232 116 0 0 chr1 34664163 34664464 -207999889 + AluSx SINE Alu 1 301 -11 1953 151 0 0 chr1 34664484 34664762 -207999591 - AluSx SINE Alu -11 301 24 1233 102 11 27 chr1 34664863 34665049 -207999304 + AluSg/x SINE Alu 128 310 0 29 0 0 0 chr1 34665072 34665101 -207999252 + AT_rich Low_complexity Low_complexity 1 29 0 517 214 129 28 chr1 34665154 34665332 -207999021 + L1ME3 LINE L1 5958 6153 -9 580 129 0 0 chr1 34665484 34665569 -207998784 - AluJb SINE Alu -24 288 204 2434 78 0 0 chr1 34665615 34665909 -207998444 - AluY SINE Alu -17 294 1 1926 55 0 47 chr1 34665938 34666192 -207998161 - AluY SINE Alu -1 310 69 417 211 22 0 chr1 34666192 34666282 -207998071 - HY4 scRNA scRNA -1 92 1 2315 126 0 0 chr1 34666474 34666783 -207997570 - AluSg SINE Alu -1 309 1 672 81 0 0 chr1 34666912 34667011 -207997342 - Tigger1 DNA MER2_type -111 2307 2209 435 224 78 0 chr1 34667029 34667145 -207997208 - Tigger1 DNA MER2_type -2268 150 26 2212 133 0 0 chr1 34667428 34667729 -207996624 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr1 34667755 34667776 -207996577 + AT_rich Low_complexity Low_complexity 1 21 0 241 322 70 35 chr1 34667786 34667901 -207996452 - MIR SINE MIR -56 152 34 2374 81 10 3 chr1 34668392 34668689 -207995664 - AluSx SINE Alu -13 299 1 3765 178 42 55 chr1 34668720 34669686 -207994667 + LTR13 LTR ERVK 1 954 0 1652 193 52 0 chr1 34669731 34670058 -207994295 + MER2 DNA MER2_type 1 344 0 2253 120 0 3 chr1 34671642 34671943 -207992410 + AluSg SINE Alu 2 301 -9 631 175 0 0 chr1 34672106 34672203 -207992150 + AluS SINE Alu 2 98 -215 672 30 160 0 chr1 34672401 34672501 -207991852 - MER85 DNA T2_type 0 139 24 1160 140 0 11 chr1 34672590 34672768 -207991585 - AluSp SINE Alu -1 312 137 1873 116 0 0 chr1 34673334 34673576 -207990777 + AluSg SINE Alu 1 242 -68 347 225 101 0 chr1 34673602 34673616 -207990737 + AluJo SINE Alu 121 143 -159 550 198 63 18 chr1 34673616 34673727 -207990626 + FLAM_A SINE Alu 1 116 -17 1292 130 5 5 chr1 34673749 34673934 -207990419 + AluSg/x SINE Alu 106 290 -22 2113 92 61 3 chr1 34674022 34674317 -207990036 - AluSx SINE Alu 0 312 1 22 56 0 0 chr1 34674383 34674419 -207989934 + AT_rich Low_complexity Low_complexity 1 36 0 2129 126 7 7 chr1 34675467 34675768 -207988585 - AluSg SINE Alu -9 301 1 2338 72 0 10 chr1 34675849 34676141 -207988212 + AluY SINE Alu 1 289 -22 607 144 42 17 chr1 34676157 34676275 -207988078 + L1MB3 LINE L1 6056 6176 -7 1428 171 33 22 chr1 34676285 34676559 -207987794 - AluJo SINE Alu -31 281 5 2126 125 0 34 chr1 34676747 34677067 -207987286 - AluSg SINE Alu 0 310 2 2265 94 0 13 chr1 34677068 34677366 -207986987 - AluSq SINE Alu -19 294 1 22 0 0 0 chr1 34677660 34677682 -207986671 + AT_rich Low_complexity Low_complexity 1 22 0 1961 167 3 0 chr1 34678190 34678501 -207985852 - AluJo SINE Alu 0 312 1 2098 123 19 7 chr1 34678538 34678846 -207985507 - AluSx SINE Alu 0 312 1 883 94 11 171 chr1 34678892 34678999 -207985354 - AluJo SINE Alu -89 223 101 198 0 0 0 chr1 34678999 34679021 -207985332 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 1510 139 19 104 chr1 34679021 34679330 -207985023 - AluJo SINE Alu -29 283 1 883 94 11 171 chr1 34679330 34679402 -207984951 - AluJo SINE Alu -209 103 72 195 69 0 0 chr1 34679473 34679502 -207984851 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2394 102 0 0 chr1 34679525 34679830 -207984523 + AluSc SINE Alu 2 306 -3 1991 164 0 16 chr1 34680127 34680444 -207983909 - AluJo SINE Alu 0 312 1 1778 161 31 3 chr1 34680618 34680910 -207983443 - AluSg SINE Alu -10 300 1 2587 47 0 0 chr1 34680922 34681218 -207983135 - AluY SINE Alu -15 296 1 266 204 21 86 chr1 34681295 34681388 -207982965 + MIR SINE MIR 47 133 -75 1567 162 42 32 chr1 34682210 34682350 -207982003 + AluJo SINE Alu 1 138 -174 2330 88 0 7 chr1 34682350 34682647 -207981706 + AluSq SINE Alu 1 295 -18 1567 162 42 32 chr1 34682647 34682790 -207981563 + AluJo SINE Alu 138 287 -25 2225 115 0 16 chr1 34682819 34682955 -207981398 + AluSx SINE Alu 2 139 -173 2578 57 0 0 chr1 34682955 34683253 -207981100 + AluY SINE Alu 1 298 -13 2225 115 0 16 chr1 34683253 34683421 -207980932 + AluSx SINE Alu 139 301 -11 21 0 0 0 chr1 34683447 34683468 -207980885 + AT_rich Low_complexity Low_complexity 1 21 0 262 312 47 44 chr1 34683478 34683622 -207980731 - MIR SINE MIR -56 152 8 2377 77 10 3 chr1 34684084 34684381 -207979972 - AluSx SINE Alu -13 299 1 4096 177 42 55 chr1 34684412 34685378 -207978975 + LTR13 LTR ERVK 1 954 0 1761 193 52 0 chr1 34685423 34685750 -207978603 + MER2 DNA MER2_type 1 344 0 2515 69 0 3 chr1 34687334 34687637 -207976716 + AluY SINE Alu 2 303 -8 677 175 0 0 chr1 34687800 34687897 -207976456 + AluS SINE Alu 2 98 -215 675 30 160 0 chr1 34688095 34688195 -207976158 - MER85 DNA T2_type 0 139 24 1176 147 0 0 chr1 34688284 34688461 -207975892 - AluSp SINE Alu 0 313 137 1760 132 0 0 chr1 34689027 34689269 -207975084 + AluSg SINE Alu 1 242 -68 1171 189 28 119 chr1 34689309 34689627 -207974726 + AluJb SINE Alu 2 290 -12 2594 58 0 10 chr1 34691378 34691687 -207972666 + AluY SINE Alu 2 307 -4 1367 183 17 0 chr1 34691698 34691933 -207972420 + AluJb SINE Alu 1 239 -73 901 188 0 0 chr1 34691935 34692084 -207972269 + AluJo/FRAM SINE Alu 154 302 -10 2366 96 0 22 chr1 34692212 34692525 -207971828 + AluSq SINE Alu 1 306 -7 1091 139 0 23 chr1 34692665 34692838 -207971515 + AluJo SINE Alu 124 292 -20 909 270 117 61 chr1 34692923 34693624 -207970729 + MER21B LTR ERV1 1 740 -123 875 161 78 64 chr1 34693943 34694134 -207970219 - L1MB7 LINE L1 -55 6129 5942 2223 95 21 0 chr1 34694134 34694418 -207969935 - AluSq SINE Alu -23 290 1 875 161 78 64 chr1 34694418 34694459 -207969894 - L1MB7 LINE L1 -242 5942 5903 2052 161 3 0 chr1 34694459 34694770 -207969583 - AluSx SINE Alu 0 312 1 875 161 78 64 chr1 34694770 34694888 -207969465 - L1MB7 LINE L1 -281 5903 5708 2331 116 0 0 chr1 34694896 34695199 -207969154 + AluSx SINE Alu 1 303 -9 341 191 66 103 chr1 34695304 34695440 -207968913 + MER58B DNA MER1_type 182 312 -29 210 105 0 0 chr1 34696220 34696258 -207968095 + (T)n Simple_repeat Simple_repeat 1 38 0 896 164 16 55 chr1 34698156 34698339 -207966014 + AluSg/x SINE Alu 137 312 0 2322 105 0 0 chr1 34698377 34698671 -207965682 + AluSg SINE Alu 1 294 -16 2097 92 60 3 chr1 34698890 34699172 -207965181 + AluSc SINE Alu 1 298 -11 2049 138 10 10 chr1 34699507 34699819 -207964534 - AluSx SINE Alu 0 312 1 965 123 14 0 chr1 34700898 34701036 -207963317 - FLAM_C SINE Alu -3 140 1 1035 165 142 0 chr1 34701906 34702160 -207962193 + MER33 DNA MER1_type 10 299 -25 450 240 156 7 chr1 34702594 34702748 -207961605 - MIR SINE MIR -64 198 22 2450 87 0 3 chr1 34702964 34703264 -207961089 + AluSq SINE Alu 1 299 -14 2287 95 14 3 chr1 34703282 34703578 -207960775 + AluSc SINE Alu 1 299 -10 224 319 69 0 chr1 34703635 34703707 -207960646 + L2 LINE L2 2897 2973 -299 2055 96 56 0 chr1 34703722 34704042 -207960311 - AluSx SINE Alu 0 336 2 467 305 90 11 chr1 34704086 34704263 -207960090 + MIR SINE MIR 22 212 -50 255 138 169 15 chr1 34704392 34704457 -207959896 + HsTC2 DNA Tc2 3 77 -1821 1930 86 71 0 chr1 34704520 34704789 -207959564 - AluY SINE Alu -23 288 1 2332 71 10 7 chr1 34704849 34705144 -207959209 - AluSc SINE Alu -13 296 1 1676 105 27 27 chr1 34705153 34705410 -207958943 - AluSg1 SINE Alu 0 309 53 251 214 43 57 chr1 34705434 34705504 -207958849 + L2 LINE L2 3203 3271 -1 2458 81 0 0 chr1 34705581 34705877 -207958476 + AluSc SINE Alu 1 296 -13 319 238 0 0 chr1 34706016 34706079 -207958274 + AluJ/FLAM SINE Alu 1 63 -239 2102 108 4 0 chr1 34706305 34706584 -207957769 + AluSg SINE Alu 22 301 -9 2019 121 3 24 chr1 34706596 34706724 -207957629 + AluSx SINE Alu 9 138 -174 1917 134 17 14 chr1 34706724 34706856 -207957497 + AluSx SINE Alu 1 131 -181 2258 120 0 0 chr1 34706856 34707165 -207957188 + AluY SINE Alu 1 309 -2 1917 134 17 14 chr1 34707165 34707322 -207957031 + AluSx SINE Alu 131 291 -21 2019 121 3 24 chr1 34707322 34707490 -207956863 + AluSx SINE Alu 138 299 -13 439 122 17 211 chr1 34707591 34707771 -207956582 + Charlie5 DNA MER1_type 2480 2585 -27 2190 81 18 0 chr1 34707870 34708155 -207956198 + AluY SINE Alu 1 290 -21 189 0 0 0 chr1 34708157 34708178 -207956175 + (CAT)n Simple_repeat Simple_repeat 2 22 0 1923 116 20 34 chr1 34708387 34708679 -207955674 + AluSx SINE Alu 3 290 -22 1633 144 12 4 chr1 34708680 34708937 -207955416 + AluSx SINE Alu 40 298 -14 375 252 59 112 chr1 34709038 34709340 -207955013 + L1M2 LINE L1 1737 3819 -3029 680 165 0 0 chr1 34709340 34709455 -207954898 + AluSg/x SINE Alu 188 302 -10 453 36 0 0 chr1 34709461 34709516 -207954837 + (TG)n Simple_repeat Simple_repeat 2 56 0 2070 121 0 4 chr1 34709535 34709808 -207954545 + AluSx SINE Alu 2 273 -39 284 210 0 16 chr1 34709968 34710030 -207954323 + MIR3 SINE MIR 3 63 -145 187 261 43 0 chr1 34710228 34710274 -207954079 - L2 LINE L2 0 3313 3266 384 207 12 24 chr1 34710307 34710389 -207953964 - MIR3 SINE MIR -17 191 111 2251 106 10 0 chr1 34711302 34711605 -207952748 + AluSx SINE Alu 1 306 -6 2399 84 7 0 chr1 34711607 34711906 -207952447 + AluSq SINE Alu 1 301 -12 400 286 54 38 chr1 34712787 34712972 -207951381 + MIR3 SINE MIR 13 200 -8 489 290 164 38 chr1 34713201 34713463 -207950890 + L2 LINE L2 2978 3272 0 271 328 15 23 chr1 34713822 34713953 -207950400 - L2 LINE L2 -239 3033 2904 2070 100 0 75 chr1 34714107 34714283 -207950070 - AluSq SINE Alu -16 297 154 2217 105 0 16 chr1 34714283 34714588 -207949765 - AluSq SINE Alu -13 300 1 2070 100 0 75 chr1 34714588 34714732 -207949621 - AluSq SINE Alu -159 154 1 294 297 79 73 chr1 34714880 34714940 -207949413 - MIR3 SINE MIR -7 201 143 2273 91 37 0 chr1 34714940 34715236 -207949117 + AluSg SINE Alu 1 307 -3 294 297 79 73 chr1 34715236 34715340 -207949013 - MIR3 SINE MIR -65 143 36 247 330 57 28 chr1 34715693 34715799 -207948554 + L2 LINE L2 3204 3312 -1 * 274 214 180 0 chr1 34715798 34715887 -207948466 + MIR SINE MIR 79 183 -79 2610 64 0 3 chr1 34716155 34716467 -207947886 - AluY SINE Alu 0 311 1 536 247 31 25 chr1 34716661 34716823 -207947530 - MIR SINE MIR -41 221 59 2368 100 0 0 chr1 34716837 34717138 -207947215 - AluSg SINE Alu -9 301 1 2187 115 16 3 chr1 34717266 34717571 -207946782 - AluSx SINE Alu -3 309 1 293 153 153 0 chr1 34717809 34717881 -207946472 + MIR3 SINE MIR 101 183 -25 204 192 0 77 chr1 34717952 34718004 -207946349 + MIR SINE MIR 92 139 -69 184 286 24 0 chr1 34718130 34718172 -207946181 + MIR3 SINE MIR 120 162 -46 22 70 0 0 chr1 34720271 34720314 -207944039 + GC_rich Low_complexity Low_complexity 1 43 0 38 108 0 0 chr1 34720391 34720548 -207943805 + GC_rich Low_complexity Low_complexity 1 157 0 282 209 23 39 chr1 34720558 34720687 -207943666 + (CGGGG)n Simple_repeat Simple_repeat 2 128 0 2261 113 7 3 chr1 34722195 34722497 -207941856 + AluSx SINE Alu 2 304 -8 1663 154 10 48 chr1 34722514 34722806 -207941547 + AluJb SINE Alu 1 281 -31 3118 88 8 42 chr1 34722937 34723281 -207941072 - MER4D LTR ERV1 -388 484 161 1554 183 35 3 chr1 34723281 34723570 -207940783 + AluJb SINE Alu 3 300 -12 3118 88 8 42 chr1 34723570 34723725 -207940628 - MER4D LTR ERV1 -711 161 2 3898 105 4 4 chr1 34723826 34724389 -207939964 - LTR6A LTR ERV1 -1 563 1 297 311 76 8 chr1 34725162 34725281 -207939072 - L2 LINE L2 -4 3268 3142 2292 114 0 0 chr1 34725470 34725768 -207938585 - AluSq SINE Alu -15 298 1 288 270 173 30 chr1 34725812 34725988 -207938365 - MIR SINE MIR -51 211 16 743 196 0 0 chr1 34726056 34726189 -207938164 + FLAM_C SINE Alu 1 133 0 2134 147 0 6 chr1 34726204 34726517 -207937836 + AluSx SINE Alu 1 311 -1 857 311 47 3 chr1 34726590 34726908 -207937445 - L2 LINE L2 -3 3310 2979 371 317 0 0 chr1 34726901 34727002 -207937351 - L2 LINE L2 -14 3299 3199 * 2215 79 68 0 chr1 34727092 34727371 -207936982 + AluSx SINE Alu 1 298 -14 1799 167 24 3 chr1 34727390 34727678 -207936675 + AluJo SINE Alu 2 295 -17 260 289 8 47 chr1 34727678 34727806 -207936547 + L1MEd LINE L1 1089 1211 -4908 1779 184 0 3 chr1 34727855 34728148 -207936205 + AluJb SINE Alu 21 312 0 1268 241 60 62 chr1 34728229 34728623 -207935730 - LTR38 LTR ERV1 0 556 162 881 121 87 7 chr1 34728623 34728772 -207935581 - L1PA15 LINE L1 0 6165 6005 1268 241 60 62 chr1 34728772 34728874 -207935479 - LTR38 LTR ERV1 -394 162 61 9859 115 46 50 chr1 34729166 34729612 -207934741 + Tigger1 DNA MER2_type 1 447 -1971 2376 86 0 10 chr1 34729612 34729915 -207934438 - AluSg1 SINE Alu -9 300 1 9859 115 46 50 chr1 34729915 34730319 -207934034 + Tigger1 DNA MER2_type 447 851 -1567 10273 53 5 106 chr1 34730319 34731856 -207932497 + SVA Other Other 1 1382 -4 9859 115 46 50 chr1 34731856 34732163 -207932190 + Tigger1 DNA MER2_type 851 1158 -1260 2063 109 0 67 chr1 34732163 34732317 -207932036 + AluSx SINE Alu 1 125 -187 2256 108 10 0 chr1 34732317 34732614 -207931739 + AluSg SINE Alu 1 300 -10 2063 109 0 67 chr1 34732614 34732771 -207931582 + AluSx SINE Alu 125 291 -21 9859 115 46 50 chr1 34732771 34733346 -207931007 + Tigger1 DNA MER2_type 1158 1730 -688 2800 13 0 0 chr1 34733346 34733645 -207930708 + AluYa5 SINE Alu 1 299 -12 319 233 115 51 chr1 34733677 34733847 -207930506 + MIR SINE MIR 69 262 0 319 194 45 0 chr1 34733881 34733948 -207930405 - MER103 DNA DNA -94 72 3 21 57 0 0 chr1 34739199 34739234 -207925119 + AT_rich Low_complexity Low_complexity 1 35 0 2317 82 3 17 chr1 34740525 34740819 -207923534 - AluSp SINE Alu -23 290 1 329 265 128 51 chr1 34740824 34741058 -207923295 + L1ME LINE L1 5521 5772 -349 2231 107 0 3 chr1 34741059 34741350 -207923003 + AluY SINE Alu 2 291 -20 2222 103 3 0 chr1 34741406 34741688 -207922665 - AluSp SINE Alu -15 298 16 546 136 0 0 chr1 34741714 34741795 -207922558 + AluSg1 SINE Alu 10 90 -219 1585 183 30 8 chr1 34741943 34742211 -207922142 + AluJb SINE Alu 26 299 -13 916 143 148 123 chr1 34742211 34742326 -207922027 + Charlie1 DNA MER1_type 2165 2276 -485 2333 71 10 17 chr1 34742326 34742620 -207921733 + AluSx SINE Alu 1 292 -20 916 143 148 123 chr1 34742620 34742675 -207921678 + Charlie1 DNA MER1_type 2276 2328 -433 719 89 0 0 chr1 34742675 34742776 -207921577 - HY3 scRNA scRNA 0 101 1 916 143 148 123 chr1 34742776 34742952 -207921401 + Charlie1 DNA MER1_type 2328 2526 -235 1327 231 10 10 chr1 34742952 34743247 -207921106 - AluJo SINE Alu -15 297 3 916 143 148 123 chr1 34743247 34743289 -207921064 + Charlie1 DNA MER1_type 2526 2565 -196 546 176 0 88 chr1 34743310 34743405 -207920948 + FAM SINE Alu 1 6 -179 2201 137 0 10 chr1 34743405 34743711 -207920642 - AluSx SINE Alu -9 303 1 546 176 0 88 chr1 34743711 34743751 -207920602 + FAM SINE Alu 6 48 -1 637 185 23 17 chr1 34743752 34743790 -207920563 + Charlie1 DNA MER1_type 2555 2591 -170 1897 173 0 3 chr1 34743790 34744096 -207920257 - AluSx SINE Alu -7 305 1 637 185 23 17 chr1 34744096 34744230 -207920123 + Charlie1 DNA MER1_type 2591 2728 -33 1833 97 4 0 chr1 34744237 34744463 -207919890 + AluSc SINE Alu 1 227 -82 213 39 0 0 chr1 34744473 34744499 -207919854 + (A)n Simple_repeat Simple_repeat 1 26 0 23 54 0 0 chr1 34744553 34744590 -207919763 + AT_rich Low_complexity Low_complexity 1 37 0 1923 143 0 17 chr1 34744592 34744886 -207919467 + AluSx SINE Alu 3 291 -21 977 206 18 56 chr1 34744889 34745145 -207919208 - L1ME2 LINE L1 -16 6148 5903 2134 110 7 17 chr1 34745145 34745444 -207918909 - AluSg SINE Alu -14 296 1 977 206 18 56 chr1 34745444 34745473 -207918880 - L1ME2 LINE L1 -261 5903 5874 2426 177 103 21 chr1 34745476 34746002 -207918351 - MER67B LTR ERV1 0 661 93 1056 133 0 7 chr1 34746202 34746352 -207918001 - AluSq/x SINE Alu -164 149 1 569 244 78 6 chr1 34746380 34746627 -207917726 + L2 LINE L2 2774 3036 -277 2371 93 7 7 chr1 34746632 34746942 -207917411 - AluSx SINE Alu -2 310 1 1526 192 4 4 chr1 34746963 34747229 -207917124 - AluJb SINE Alu -46 266 1 313 234 0 53 chr1 34747359 34747453 -207916900 - L2 LINE L2 0 3272 3184 2217 115 0 16 chr1 34747529 34747833 -207916520 - AluSx SINE Alu -5 307 9 309 242 39 112 chr1 34749451 34749629 -207914724 + MIR3 SINE MIR 24 188 -20 186 103 0 0 chr1 34751032 34751061 -207913292 + (TCCCC)n Simple_repeat Simple_repeat 2 30 0 234 267 103 35 chr1 34751205 34751321 -207913032 + MIR3 SINE MIR 58 181 -27 1923 135 35 3 chr1 34751379 34751661 -207912692 + AluSq SINE Alu 1 291 -22 2359 83 0 17 chr1 34752036 34752337 -207912016 + AluSg SINE Alu 1 296 -14 617 192 120 0 chr1 34752338 34752463 -207911890 - MER58C DNA MER1_type -43 172 33 2314 112 0 10 chr1 34752528 34752841 -207911512 + AluSg SINE Alu 1 310 0 1241 86 11 75 chr1 34752844 34753030 -207911323 + AluSp SINE Alu 2 175 -138 1275 157 0 0 chr1 34753044 34753235 -207911118 + AluSg/x SINE Alu 121 311 -1 3029 122 64 12 chr1 34753247 34753746 -207910607 + MER1A DNA MER1_type 3 527 0 906 269 78 58 chr1 34753804 34754291 -207910062 + L1MC/D LINE L1 5291 5787 -2021 2173 98 10 17 chr1 34754438 34754733 -207909620 - AluSx SINE Alu -19 293 1 2392 89 7 3 chr1 34754733 34755037 -207909316 - AluSx SINE Alu -7 305 1 202 311 0 0 chr1 34755265 34755326 -207909027 - MIR SINE MIR -86 122 62 439 100 0 29 chr1 34755333 34755403 -207908950 + AluJ/FRAM SINE Alu 220 287 -25 315 0 0 0 chr1 34755403 34755438 -207908915 + (CA)n Simple_repeat Simple_repeat 2 36 0 2511 51 10 0 chr1 34755438 34755733 -207908620 - AluSp SINE Alu -15 298 1 256 160 20 0 chr1 34758140 34758190 -207906163 + Alu SINE Alu 1 51 -251 2103 142 0 3 chr1 34758346 34758641 -207905712 + AluSx SINE Alu 1 294 -18 619 159 93 0 chr1 34758669 34758776 -207905577 + FLAM_C SINE Alu 1 117 -16 515 226 215 34 chr1 34758838 34759015 -207905338 - MER3 DNA MER1_type 0 209 1 258 319 108 88 chr1 34759338 34759771 -207904582 + L2 LINE L2 2814 3255 -17 1487 150 67 33 chr1 34759771 34760071 -207904282 - AluJb SINE Alu 0 312 3 2081 129 0 3 chr1 34760456 34760750 -207903603 + AluSx SINE Alu 1 293 -19 387 228 65 32 chr1 34760970 34761093 -207903260 - MIR SINE MIR -111 151 25 1834 195 0 0 chr1 34761231 34761538 -207902815 - AluJo SINE Alu -5 307 1 243 0 0 0 chr1 34761577 34761604 -207902749 + (TA)n Simple_repeat Simple_repeat 1 27 0 2455 99 0 3 chr1 34761604 34761918 -207902435 - AluSq SINE Alu 0 313 1 1882 147 29 19 chr1 34761937 34762244 -207902109 + AluJo SINE Alu 1 310 -2 2229 129 0 10 chr1 34762277 34762588 -207901765 - AluSg SINE Alu -2 308 1 743 181 90 57 chr1 34762653 34762779 -207901574 + MER58C DNA MER1_type 33 168 -2252 2340 94 0 7 chr1 34762779 34763076 -207901277 - AluSc SINE Alu -14 295 1 743 181 90 57 chr1 34763076 34763126 -207901227 + MER58C DNA MER1_type 168 215 0 2443 91 0 0 chr1 34763254 34763562 -207900791 - AluY SINE Alu -2 309 2 2417 86 7 0 chr1 34763572 34763873 -207900480 - AluSc SINE Alu -6 303 1 443 145 26 0 chr1 34763910 34763986 -207900367 + AluS SINE Alu 2 79 -234 1881 89 20 0 chr1 34764087 34764333 -207900020 + AluSq SINE Alu 53 303 -10 2412 73 39 25 chr1 34764333 34764668 -207899685 + MER4D LTR ERV1 511 853 -19 2085 145 0 3 chr1 34764668 34764964 -207899389 - AluSx SINE Alu -17 295 1 2412 73 39 25 chr1 34764964 34764985 -207899368 + MER4D LTR ERV1 853 872 0 348 309 233 37 chr1 34764998 34765736 -207898617 + L2 LINE L2 1753 2676 -638 2116 141 3 0 chr1 34765736 34766034 -207898319 - AluSx SINE Alu -13 299 1 348 309 233 37 chr1 34766034 34766133 -207898220 + L2 LINE L2 2676 2754 -560 2195 114 3 16 chr1 34766412 34766720 -207897633 + AluSq SINE Alu 1 304 -9 2005 170 45 2 chr1 34766852 34767172 -207897181 + L1MB7 LINE L1 5728 6072 -112 2562 53 0 0 chr1 34767172 34767474 -207896879 + AluY SINE Alu 1 302 -9 2005 170 45 2 chr1 34767474 34767577 -207896776 + L1MB7 LINE L1 6072 6169 -15 262 303 96 32 chr1 34767701 34767889 -207896464 - L2 LINE L2 -140 3173 2974 248 208 0 0 chr1 34768062 34768110 -207896243 + L2 LINE L2 3004 3051 -221 187 195 0 24 chr1 34768223 34768264 -207896089 + L2 LINE L2 3243 3282 -31 2052 141 13 0 chr1 34770630 34770936 -207893417 + AluSx SINE Alu 1 310 -2 2350 93 3 7 chr1 34771489 34771789 -207892564 - AluSc SINE Alu -10 299 1 241 160 20 0 chr1 34771789 34771839 -207892514 + MER58C DNA MER1_type 165 215 0 2447 91 0 0 chr1 34771967 34772275 -207892078 - AluY SINE Alu -2 309 2 2423 85 10 0 chr1 34772285 34772590 -207891763 - AluSx SINE Alu -4 308 1 928 291 100 46 chr1 34772612 34772999 -207891354 - L1MEc LINE L1 -4574 1822 1457 1710 178 24 10 chr1 34772999 34773297 -207891056 - AluJb SINE Alu -10 302 1 928 291 100 46 chr1 34773297 34773728 -207890625 - L1MEc LINE L1 -4939 1457 942 2312 74 35 0 chr1 34773728 34774049 -207890304 - AluY SINE Alu 0 311 1 928 291 100 46 chr1 34774049 34774190 -207890163 - L1MEc LINE L1 -5454 942 810 2435 97 0 0 chr1 34774810 34775138 -207889215 - AluSq SINE Alu 0 328 1 271 308 15 62 chr1 34775963 34776093 -207888260 - MER5A DNA MER1_type -4 185 62 2491 67 0 19 chr1 34776119 34776431 -207887922 - AluY SINE Alu -5 306 1 1501 41 5 41 chr1 34776531 34776725 -207887628 + AluY SINE Alu 114 300 -11 213 328 62 0 chr1 34777024 34777088 -207887265 + MIR SINE MIR 33 100 -162 284 330 45 0 chr1 34777100 34777212 -207887141 + MIR SINE MIR 12 128 -134 2498 56 0 26 chr1 34778002 34778307 -207886046 + AluY SINE Alu 1 297 -14 1172 188 4 4 chr1 34778636 34778865 -207885488 - AluJb SINE Alu 0 312 84 195 42 0 0 chr1 34778908 34778932 -207885421 + (TA)n Simple_repeat Simple_repeat 1 24 0 418 284 18 71 chr1 34778977 34779146 -207885207 - MIR3 SINE MIR -33 175 16 701 288 213 17 chr1 34779648 34780051 -207884302 - L1MC4a LINE L1 -1942 5866 5385 488 221 0 11 chr1 34781070 34781165 -207883188 - L1MC1 LINE L1 -60 6273 6180 331 231 214 12 chr1 34781170 34781343 -207883010 + MIR SINE MIR 28 235 -27 287 278 49 0 chr1 34781458 34781570 -207882783 + MIR SINE MIR 56 171 -63 2163 122 10 0 chr1 34781570 34781866 -207882487 - AluSx SINE Alu -13 299 1 216 0 0 0 chr1 34781869 34781893 -207882460 + (T)n Simple_repeat Simple_repeat 1 24 0 314 275 133 13 chr1 34782270 34782416 -207881937 + MIR SINE MIR 33 189 -62 22 80 0 13 chr1 34782742 34782804 -207881549 + AT_rich Low_complexity Low_complexity 1 63 -11 1517 194 20 3 chr1 34782804 34783097 -207881256 + AluJo SINE Alu 1 298 -14 22 80 0 13 chr1 34783097 34783109 -207881244 + AT_rich Low_complexity Low_complexity 63 74 0 265 262 60 12 chr1 34783328 34783412 -207880941 + L2 LINE L2 1875 1962 -1352 1654 171 30 26 chr1 34783540 34783844 -207880509 - AluJo SINE Alu -7 305 1 1334 182 21 106 chr1 34784849 34785179 -207879174 + AluYb8 SINE Alu 1 302 -16 265 289 258 21 chr1 34786116 34786306 -207878047 + MIR SINE MIR 2 236 -26 679 361 30 12 chr1 34787148 34787441 -207876912 - L3 LINE CR1 -1 1576 1275 2225 99 26 0 chr1 34787441 34787745 -207876608 - AluSx SINE Alu 0 312 1 679 361 30 12 chr1 34787745 34787789 -207876564 - L3 LINE CR1 -302 1275 1233 252 159 57 68 chr1 34787789 34787877 -207876476 - L1ME4a LINE L1 -62 6059 5973 728 252 148 13 chr1 34787914 34788232 -207876121 - L1ME4a LINE L1 -225 5896 5536 24 32 0 0 chr1 34788300 34788331 -207876022 + AT_rich Low_complexity Low_complexity 1 31 0 1101 228 90 112 chr1 34788331 34788944 -207875409 - L1MC4 LINE L1 -292 7750 7160 2251 106 10 0 chr1 34788944 34789236 -207875117 + AluSq SINE Alu 1 295 -18 1101 228 90 112 chr1 34789236 34789478 -207874875 - L1MC4 LINE L1 -882 7160 6914 2466 208 19 95 chr1 34789509 34790209 -207874144 - L1MA8 LINE L1 -148 6143 5506 2103 136 3 3 chr1 34790209 34790517 -207873836 - AluSx SINE Alu -4 308 1 2466 208 19 95 chr1 34790517 34790592 -207873761 - L1MA8 LINE L1 -785 5506 5427 293 233 67 11 chr1 34790567 34790657 -207873696 - HAL1 LINE L1 -340 2167 2073 * 858 161 45 19 chr1 34790768 34790923 -207873430 + FRAM SINE Alu 1 157 -19 428 174 283 0 chr1 34790929 34791021 -207873332 - FLAM_C SINE Alu -15 118 1 551 192 48 8 chr1 34791024 34791149 -207873204 - L1MEc LINE L1 -3060 3155 3026 2033 144 10 3 chr1 34791149 34791455 -207872898 - AluJb SINE Alu -4 308 1 2200 119 3 7 chr1 34791463 34791765 -207872588 - AluSg SINE Alu -9 301 1 744 167 70 87 chr1 34791778 34792077 -207872276 - L1MEc LINE L1 -4031 2365 2072 756 215 7 0 chr1 34792082 34792226 -207872127 - FRAM SINE Alu -12 164 20 2454 74 7 0 chr1 34792257 34792556 -207871797 - AluSp SINE Alu -12 301 1 720 228 70 21 chr1 34792558 34792799 -207871554 - L1MEc LINE L1 -4529 1867 1615 330 264 174 7 chr1 34792831 34792975 -207871378 - L1MEc LINE L1 -6192 204 37 23 68 0 0 chr1 34793227 34793271 -207871082 + AT_rich Low_complexity Low_complexity 1 44 0 2277 94 10 0 chr1 34793508 34793807 -207870546 + AluSq SINE Alu 6 307 -6 433 272 66 42 chr1 34794555 34794609 -207869744 + MIR SINE MIR 44 95 -167 1830 130 33 4 chr1 34794609 34794885 -207869468 - AluJb SINE Alu 0 312 29 433 272 66 42 chr1 34794885 34795043 -207869310 + MIR SINE MIR 95 261 -1 602 172 78 117 chr1 34795275 34795455 -207868898 + MIR SINE MIR 52 224 -38 251 220 66 33 chr1 34796038 34796129 -207868224 - L1P LINE L1 -743 5408 5315 386 285 79 47 chr1 34796421 34796656 -207867697 - MIR SINE MIR -1 261 17 804 159 19 125 chr1 34796838 34796860 -207867493 + MER5A DNA MER1_type 4 27 -162 2237 101 0 44 chr1 34796860 34797176 -207867177 + AluSx SINE Alu 1 302 -10 804 159 19 125 chr1 34797176 34797361 -207866992 + MER5A DNA MER1_type 27 189 0 301 259 154 35 chr1 34797448 34797520 -207866833 + MIR SINE MIR 2 64 -198 1975 135 46 0 chr1 34797520 34797802 -207866551 + AluSx SINE Alu 1 295 -17 301 259 154 35 chr1 34797802 34797930 -207866423 + MIR SINE MIR 64 226 -36 273 355 154 31 chr1 34797989 34798347 -207866006 + L2 LINE L2 2871 3272 0 1868 131 53 0 chr1 34798682 34798964 -207865389 + AluSg SINE Alu 1 297 -13 1857 139 33 13 chr1 34799093 34799394 -207864959 + AluJo SINE Alu 1 307 -5 252 217 0 0 chr1 34799396 34799442 -207864911 + MIR SINE MIR 30 75 -133 919 214 229 23 chr1 34799580 34799663 -207864690 + L2 LINE L2 2444 2509 -805 2273 140 9 6 chr1 34799663 34800006 -207864347 + MER2 DNA MER2_type 1 344 0 919 214 229 23 chr1 34800006 34800272 -207864081 + L2 LINE L2 2509 2865 -449 2629 186 116 104 chr1 34800488 34800630 -207863723 - L1MC/D LINE L1 -743 5403 5264 2527 69 0 3 chr1 34800630 34800935 -207863418 + AluY SINE Alu 1 304 -7 2629 186 116 104 chr1 34800935 34801207 -207863146 - L1MC/D LINE L1 -882 5264 4997 2372 91 3 0 chr1 34801207 34801504 -207862849 + AluSp SINE Alu 9 306 -7 2629 186 116 104 chr1 34801504 34801674 -207862679 - L1MC/D LINE L1 -1149 4997 4830 1682 153 35 21 chr1 34801674 34801956 -207862397 + AluJb SINE Alu 21 306 -6 276 30 0 0 chr1 34801957 34801990 -207862363 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 306 0 0 0 chr1 34801989 34802023 -207862330 + (CA)n Simple_repeat Simple_repeat 2 35 0 2629 186 116 104 chr1 34801990 34802348 -207862005 - L1MC/D LINE L1 -1316 4830 4478 1973 153 0 3 chr1 34802348 34802648 -207861705 - AluSx SINE Alu -13 299 1 2629 186 116 104 chr1 34802648 34803041 -207861312 - L1MC/D LINE L1 -1668 4478 4122 1831 83 120 26 chr1 34803058 34803214 -207861139 - AluY SINE Alu 0 311 171 2085 124 17 0 chr1 34803214 34803505 -207860848 - AluSp SINE Alu -17 296 1 1831 83 120 26 chr1 34803505 34803640 -207860713 - AluY SINE Alu -140 171 1 2298 100 0 7 chr1 34803667 34803968 -207860385 - AluSx SINE Alu -13 299 1 840 155 8 0 chr1 34803971 34804100 -207860253 - AluSq/x SINE Alu -180 133 4 428 143 0 0 chr1 34804142 34804205 -207860148 + AluJ/FLAM SINE Alu 12 74 -238 1829 121 35 14 chr1 34804308 34804615 -207859738 + AluSq SINE Alu 1 313 0 1072 112 39 22 chr1 34804615 34804794 -207859559 + AluSg/x SINE Alu 131 312 0 2205 118 7 0 chr1 34804797 34805102 -207859251 + AluSc SINE Alu 3 309 0 2692 119 26 18 chr1 34805103 34805386 -207858967 + L1P4 LINE L1 5317 5607 -559 2066 123 27 0 chr1 34805386 34805687 -207858666 + AluSp SINE Alu 1 309 -4 2692 119 26 18 chr1 34805687 34805858 -207858495 + L1P4 LINE L1 5607 5775 -391 1647 192 0 13 chr1 34805865 34806167 -207858186 + AluJb SINE Alu 1 298 -14 1486 137 26 26 chr1 34806301 34806571 -207857782 + AluSx SINE Alu 40 309 -3 740 212 34 0 chr1 34806572 34806718 -207857635 + AluJo/FRAM SINE Alu 138 288 -14 382 283 87 14 chr1 34806936 34807074 -207857279 + L1ME4a LINE L1 5490 5637 -484 273 268 197 22 chr1 34807111 34807294 -207857059 + L1ME4a LINE L1 5721 5937 -184 2167 114 3 13 chr1 34807393 34807700 -207856653 - AluSq SINE Alu -9 304 1 285 300 15 62 chr1 34808525 34808655 -207855698 - MER5A DNA MER1_type -4 185 62 2491 67 0 19 chr1 34808681 34808993 -207855360 - AluY SINE Alu -5 306 1 189 0 0 0 chr1 34809017 34809038 -207855315 + (A)n Simple_repeat Simple_repeat 1 21 0 2269 91 3 0 chr1 34809043 34809329 -207855024 + AluSq SINE Alu 7 293 -20 2354 100 0 3 chr1 34809330 34809631 -207854722 + AluSx SINE Alu 1 300 -12 229 216 20 0 chr1 34809631 34809682 -207854671 - MER5A DNA MER1_type -61 128 77 226 200 148 35 chr1 34809908 34810023 -207854330 + L1ME LINE L1 5617 5744 -377 1567 195 0 4 chr1 34810105 34810367 -207853986 + AluJb SINE Alu 12 272 -40 1328 207 7 29 chr1 34810379 34810490 -207853863 + AluJo SINE Alu 27 139 -173 2266 78 11 3 chr1 34810490 34810800 -207853553 + AluSp SINE Alu 2 313 0 1328 207 7 29 chr1 34810800 34810962 -207853391 + AluJo SINE Alu 139 295 -17 1636 156 35 0 chr1 34811128 34811385 -207852968 - AluJb SINE Alu -46 266 1 2368 70 0 17 chr1 34811408 34811706 -207852647 + AluY SINE Alu 3 295 -16 1745 149 11 8 chr1 34811795 34812057 -207852296 + AluJb SINE Alu 6 268 -44 673 88 53 26 chr1 34813199 34813313 -207851040 + MER47A DNA MER2_type 45 161 -205 1048 129 69 45 chr1 34813334 34813536 -207850817 + AluSp SINE Alu 1 207 -106 22 70 0 0 chr1 34814020 34814063 -207850290 + GC_rich Low_complexity Low_complexity 1 43 0 37 109 0 0 chr1 34814140 34814296 -207850057 + GC_rich Low_complexity Low_complexity 1 156 0 282 209 23 39 chr1 34814306 34814435 -207849918 + (CGGGG)n Simple_repeat Simple_repeat 2 128 0 2473 64 0 3 chr1 34815048 34815343 -207849010 - AluSx SINE Alu -18 294 1 357 285 110 46 chr1 34815343 34815624 -207848729 + L3 LINE CR1 613 911 -666 283 282 179 8 chr1 34815608 34815725 -207848628 - L2 LINE L2 -9 3263 3127 * 350 268 18 0 chr1 34815742 34815854 -207848499 + (TA)n Simple_repeat Simple_repeat 1 114 0 1972 131 3 36 chr1 34816207 34816513 -207847840 + AluJo SINE Alu 2 297 -15 790 182 171 6 chr1 34816570 34816746 -207847607 + MER3 DNA MER1_type 5 209 0 2236 94 3 3 chr1 34816913 34817201 -207847152 + AluSg SINE Alu 1 288 -22 887 161 0 0 chr1 34817366 34817503 -207846850 + FLAM_C SINE Alu 1 137 -6 1675 145 59 38 chr1 34818417 34818706 -207845647 + AluJb SINE Alu 1 295 -17 880 130 0 36 chr1 34818947 34819085 -207845268 - FLAM_C SINE Alu 0 133 1 210 256 51 51 chr1 34820666 34820744 -207843609 - MIR SINE MIR -162 100 23 2554 73 0 3 chr1 34821482 34821795 -207842558 + AluSq SINE Alu 1 312 -1 2266 108 7 3 chr1 34821815 34822122 -207842231 + AluY SINE Alu 1 308 -3 338 261 42 34 chr1 34822248 34822367 -207841986 - L2 LINE L2 0 3313 3194 654 231 0 64 chr1 34822720 34822876 -207841477 - FRAM SINE Alu -30 146 1 2336 119 0 0 chr1 34822881 34823193 -207841160 - AluSx SINE Alu 0 312 1 285 300 15 62 chr1 34824018 34824148 -207840205 - MER5A DNA MER1_type -4 185 62 1543 55 0 25 chr1 34824174 34824373 -207839980 - AluY SINE Alu -5 306 113 420 241 29 51 chr1 35024402 35024539 -207639814 - L2 LINE L2 -185 3087 2954 266 104 0 21 chr1 35024588 35024636 -207639717 + (TG)n Simple_repeat Simple_repeat 1 47 0 219 160 40 20 chr1 35024644 35024694 -207639659 + L2 LINE L2 3217 3267 -5 389 235 52 9 chr1 35024962 35025077 -207639276 - MIR SINE MIR -122 140 21 233 171 24 0 chr1 35025445 35025486 -207638867 + MIR3 SINE MIR 119 160 -48 418 227 127 27 chr1 35025545 35025695 -207638658 - MER103 DNA DNA 0 166 2 1211 128 55 48 chr1 35025812 35025991 -207638362 - LTR45B LTR ERV1 -80 409 233 2361 89 0 0 chr1 35025991 35026284 -207638069 - AluY SINE Alu -18 293 1 1211 128 55 48 chr1 35026284 35026446 -207637907 - LTR45B LTR ERV1 -256 233 24 2181 92 53 0 chr1 35026446 35026730 -207637623 + AluSx SINE Alu 1 299 -13 189 200 0 44 chr1 35026770 35026784 -207637569 + L3 LINE CR1 1516 1558 -19 189 65 0 32 chr1 35026784 35026815 -207637538 + MIR3 SINE MIR 156 185 -23 282 288 206 12 chr1 35027207 35027367 -207636986 + L3 LINE CR1 1280 1470 -107 1161 286 74 12 chr1 35027489 35027894 -207636459 - MLT1H LTR MaLR -107 442 13 387 302 14 36 chr1 35028081 35028220 -207636133 - MIR SINE MIR -48 214 79 535 284 85 28 chr1 35028546 35028722 -207635631 - L2 LINE L2 -6 3307 3122 290 304 43 9 chr1 35029155 35029270 -207635083 + MER117 DNA MER1_type 55 173 -24 873 217 11 0 chr1 35029313 35029488 -207634865 - MER97b DNA MER1_type? -876 177 1 804 198 95 162 chr1 35030179 35030705 -207633648 + LTR16C LTR ERVL 1 491 0 495 307 23 46 chr1 35030871 35031089 -207633264 + MIR SINE MIR 15 227 -35 571 287 97 15 chr1 35032080 35032275 -207632078 + MIR SINE MIR 52 262 0 468 209 64 9 chr1 35032538 35032648 -207631705 - MIR SINE MIR -30 232 117 226 416 8 0 chr1 35032672 35032797 -207631556 - MIR3 SINE MIR -80 128 3 873 270 124 50 chr1 35033041 35033460 -207630893 - MLT1J2 LTR MaLR 0 450 1 306 191 48 129 chr1 35033479 35033626 -207630727 - MIR SINE MIR -4 258 124 683 180 27 7 chr1 35033626 35033776 -207630577 - L1ME1 LINE L1 -188 6047 5895 * 6789 218 100 70 chr1 35033762 35035154 -207629199 - L1ME1 LINE L1 -669 5564 4215 948 168 0 19 chr1 35035154 35035315 -207629038 - AluSg/x SINE Alu -19 290 133 6789 218 100 70 chr1 35035315 35035851 -207628502 - L1ME1 LINE L1 -2018 4215 3696 1724 206 7 0 chr1 35035851 35036147 -207628206 - AluJb SINE Alu -4 308 11 6789 218 100 70 chr1 35036147 35037244 -207627109 - L1ME1 LINE L1 -2537 3696 2120 5205 187 50 37 chr1 35037240 35038045 -207626308 - L1MD1 LINE L1 0 6636 5843 * 2130 115 0 14 chr1 35038045 35038379 -207625974 - AluSx SINE Alu 0 330 1 5205 187 50 37 chr1 35038379 35038536 -207625817 - L1MD1 LINE L1 -793 5843 5689 999 176 6 0 chr1 35038536 35038695 -207625658 - FRAM SINE Alu -6 160 1 5205 187 50 37 chr1 35038695 35038996 -207625357 - L1MD1 LINE L1 -947 5689 5393 324 0 0 0 chr1 35038996 35039032 -207625321 + (TTA)n Simple_repeat Simple_repeat 2 37 0 5205 187 50 37 chr1 35039032 35039496 -207624857 - L1MD1 LINE L1 -1243 5393 4855 2159 130 0 0 chr1 35039496 35039797 -207624556 - AluSx SINE Alu -2 310 10 5205 187 50 37 chr1 35039797 35039951 -207624402 - L1MD1 LINE L1 -1781 4855 4704 302 205 24 12 chr1 35039937 35040020 -207624333 - L1P LINE L1 -1906 4240 4157 * 1430 159 25 138 chr1 35040016 35040450 -207623903 - L1MD1 LINE L1 -6009 531 147 4447 249 60 45 chr1 35040469 35040744 -207623609 - L1ME1 LINE L1 -4264 2132 1863 1773 183 30 0 chr1 35040744 35041044 -207623309 - AluJo SINE Alu -3 309 1 4447 249 60 45 chr1 35041044 35041266 -207623087 - L1ME1 LINE L1 -4533 1863 1646 1732 176 28 14 chr1 35041266 35041623 -207622730 - L1MB7 LINE L1 -5 6179 5818 4447 249 60 45 chr1 35041623 35042070 -207622283 - L1ME1 LINE L1 -4750 1646 1208 2539 57 0 0 chr1 35042070 35042366 -207621987 - AluY SINE Alu -9 302 7 4447 249 60 45 chr1 35042366 35043439 -207620914 - L1ME1 LINE L1 -5188 1208 81 281 220 87 116 chr1 35043663 35043836 -207620517 - MLT1H LTR MaLR -23 526 359 251 293 65 46 chr1 35043814 35044127 -207620226 - MLT1I LTR MaLR -110 299 1 * 2249 116 0 0 chr1 35044131 35044464 -207619889 - AluSx SINE Alu 0 312 1 743 279 147 92 chr1 35044495 35044794 -207619559 - L1MEd LINE L1 -5321 798 517 2187 118 3 31 chr1 35044794 35045115 -207619238 + AluSx SINE Alu 1 312 0 743 279 147 92 chr1 35045115 35045361 -207618992 - L1MEd LINE L1 -5602 517 204 2098 131 7 3 chr1 35045361 35045651 -207618702 + AluSx SINE Alu 1 291 -21 743 279 147 92 chr1 35045651 35045798 -207618555 - L1MEd LINE L1 -5915 204 67 3957 90 19 2 chr1 35045801 35046343 -207618010 - L1PA11 LINE L1 0 6174 5624 600 275 8 0 chr1 35046585 35046716 -207617637 + L2 LINE L2 3137 3268 -4 222 222 19 0 chr1 35046829 35046883 -207617470 + L3 LINE CR1 619 673 -904 366 291 24 16 chr1 35046917 35047044 -207617309 - LTR67 LTR ERVL -2 555 428 1281 189 45 126 chr1 35047071 35047468 -207616885 + MLT1A1 LTR MaLR 1 365 0 6235 190 20 64 chr1 35047468 35047733 -207616620 + MLT1A1-int LTR MaLR 1 276 -1459 1808 185 0 0 chr1 35047733 35048031 -207616322 + AluJo SINE Alu 2 299 -13 6235 190 20 64 chr1 35048031 35049185 -207615168 + MLT1A1-int LTR MaLR 276 1357 -378 991 113 0 0 chr1 35049185 35049318 -207615035 - AluSg SINE Alu -7 303 171 1281 128 0 0 chr1 35049459 35049623 -207614730 - AluSg SINE Alu -146 164 1 1817 142 77 3 chr1 35049623 35049934 -207614419 + MLT1A1-int LTR MaLR 1351 1684 -51 357 96 0 0 chr1 35049939 35049991 -207614362 + MADE1 DNA Mariner 1 52 -28 299 106 21 0 chr1 35049991 35050038 -207614315 + MLT1A1-int LTR MaLR 1688 1735 0 1224 156 45 159 chr1 35050038 35050460 -207613893 + MLT1A2 LTR MaLR 1 374 0 2247 112 0 0 chr1 35051380 35051667 -207612686 - AluSx SINE Alu -25 287 1 366 364 24 34 chr1 35052474 35052683 -207611670 + L3 LINE CR1 718 924 -653 1883 218 107 52 chr1 35053055 35053809 -207610544 - HAL1 LINE L1 -909 1598 803 1352 121 5 15 chr1 35053813 35054019 -207610334 + L1MC1 LINE L1 6113 6316 -17 607 304 15 0 chr1 35054133 35054334 -207610019 - HAL1 LINE L1 -1696 811 608 1863 143 3 7 chr1 35054396 35054682 -207609671 + AluJo SINE Alu 2 286 -26 1620 0 0 0 chr1 35054693 35054899 -207609454 + (CAAAC)n Simple_repeat Simple_repeat 1 206 0 302 288 141 60 chr1 35054904 35055088 -207609265 + L1ME4a LINE L1 4735 4933 -1213 21 0 0 0 chr1 35055201 35055222 -207609131 + AT_rich Low_complexity Low_complexity 1 21 0 394 316 140 16 chr1 35055296 35055489 -207608864 + L1ME4a LINE L1 5176 5392 -754 1859 156 0 4 chr1 35055500 35055776 -207608577 + AluJb SINE Alu 1 275 -37 273 298 24 0 chr1 35055922 35056006 -207608347 + L1ME4a LINE L1 5512 5597 -524 455 305 51 23 chr1 35056018 35056195 -207608158 + L2 LINE L2 2902 3083 -189 488 278 32 0 chr1 35056222 35056348 -207608005 - HAL1 LINE L1 -1889 618 489 433 35 0 0 chr1 35056350 35056407 -207607946 - AluSx SINE Alu -9 303 247 1211 116 23 0 chr1 35056407 35056579 -207607774 - AluSx SINE Alu -136 176 1 484 257 117 11 chr1 35056585 35056764 -207607589 - HAL1 LINE L1 -2031 476 279 730 238 145 39 chr1 35056845 35057232 -207607121 + L1ME4a LINE L1 5599 6026 -95 239 313 209 36 chr1 35057311 35057445 -207606908 + L3 LINE CR1 966 1076 -501 2484 94 0 0 chr1 35057445 35057752 -207606601 + AluSx SINE Alu 1 307 -5 239 313 209 36 chr1 35057752 35057924 -207606429 + L3 LINE CR1 1076 1325 -252 408 222 92 59 chr1 35058430 35058583 -207605770 - MIR3 SINE MIR -49 159 2 2547 155 44 11 chr1 35058779 35059231 -207605122 + MLT1C LTR MaLR 1 467 0 341 322 130 0 chr1 35059867 35060013 -207604340 - MIR SINE MIR -14 248 84 212 283 100 33 chr1 35060650 35060770 -207603583 + L2 LINE L2 2920 3047 -225 485 290 77 0 chr1 35063728 35063897 -207600456 + MIR SINE MIR 9 190 -72 280 243 14 0 chr1 35064167 35064241 -207600112 + G-rich Low_complexity Low_complexity 3 77 0 252 310 146 53 chr1 35064916 35065197 -207599156 - L2 LINE L2 -25 3247 2941 486 257 117 28 chr1 35065293 35065472 -207598881 + MIR SINE MIR 63 257 -5 189 111 22 89 chr1 35065938 35065983 -207598370 - MER5A DNA MER1_type -62 127 86 303 277 176 85 chr1 35066375 35066652 -207597701 + L2 LINE L2 2812 3133 -139 955 144 29 0 chr1 35066652 35066826 -207597527 - L1MB2 LINE L1 -2 6169 5991 303 277 176 85 chr1 35066826 35066923 -207597430 + L2 LINE L2 3133 3220 -52 301 104 0 0 chr1 35066965 35067013 -207597340 - MADE1 DNA Mariner 0 80 33 1104 212 137 43 chr1 35067013 35067202 -207597151 - L2 LINE L2 -21 3292 3122 2484 86 0 3 chr1 35067202 35067506 -207596847 - AluSc SINE Alu -6 303 1 1104 212 137 43 chr1 35067506 35067891 -207596462 - L2 LINE L2 -191 3122 2658 1442 163 123 21 chr1 35068278 35068603 -207595750 - MLT1A1 LTR MaLR -4 361 4 433 205 291 0 chr1 35069343 35069494 -207594859 + LTR33 LTR ERVL 3 197 -324 456 211 0 21 chr1 35069561 35069656 -207594697 + LTR33 LTR ERVL 429 521 0 230 198 25 0 chr1 35070584 35070665 -207593688 + (CCCCAG)n Simple_repeat Simple_repeat 4 86 0 736 215 74 6 chr1 35072434 35072597 -207591756 - MIR SINE MIR -14 248 75 491 279 29 7 chr1 35072629 35072769 -207591584 - MIR SINE MIR 0 262 120 208 222 0 0 chr1 35072792 35072828 -207591525 + MIR SINE MIR 224 259 -3 257 300 211 0 chr1 35072836 35072926 -207591427 - MIR SINE MIR -140 122 14 437 304 30 0 chr1 35072993 35073128 -207591225 - MIR SINE MIR -80 182 44 301 245 338 0 chr1 35073491 35073630 -207590723 + L2 LINE L2 2571 2756 -558 538 253 41 20 chr1 35073687 35073833 -207590520 + L2 LINE L2 2925 3073 -240 1086 165 0 0 chr1 35073863 35074033 -207590320 - AluJb SINE Alu -14 298 129 467 185 169 79 chr1 35074037 35074226 -207590127 + L2 LINE L2 3108 3313 0 366 270 124 15 chr1 35074503 35074640 -207589713 + MIR SINE MIR 13 164 -98 582 227 76 67 chr1 35076091 35076316 -207588037 - L1MC4a LINE L1 -1892 5916 5690 470 200 45 18 chr1 35076558 35076668 -207587685 - MER94 DNA DNA -20 114 2 536 298 85 11 chr1 35076721 35076909 -207587444 - MIR SINE MIR -29 233 32 795 279 233 5 chr1 35077105 35077517 -207586836 + L2 LINE L2 1797 2302 -1012 1348 269 85 44 chr1 35077611 35078457 -207585896 - L1MC4a LINE L1 -743 5403 5039 658 75 0 0 chr1 35078482 35078562 -207585791 - MADE1 DNA Mariner 0 80 1 488 308 91 10 chr1 35078563 35078875 -207585478 + L2 LINE L2 2714 3064 -249 206 305 0 26 chr1 35079154 35079305 -207585048 + (TGG)n Simple_repeat Simple_repeat 3 149 0 247 236 0 92 chr1 35079340 35079535 -207584818 + (TGG)n Simple_repeat Simple_repeat 3 179 0 2854 253 58 96 chr1 35080271 35081128 -207583225 + L2 LINE L2 1477 2365 -948 289 103 0 118 chr1 35081128 35081196 -207583157 + MER53 DNA DNA 1 60 -129 2854 253 58 96 chr1 35081196 35081225 -207583128 + L2 LINE L2 2365 2394 -919 2522 58 0 3 chr1 35081225 35081535 -207582818 + AluSc SINE Alu 1 309 0 2854 253 58 96 chr1 35081535 35082419 -207581934 + L2 LINE L2 2394 3313 0 197 146 24 24 chr1 35082911 35082952 -207581401 - L3 LINE CR1 -855 722 682 195 325 38 0 chr1 35082941 35083021 -207581332 - L2 LINE L2 -867 2447 2365 * 2091 112 16 0 chr1 35083115 35083419 -207580934 - L1PB2 LINE L1 -3 6148 5840 180 0 0 0 chr1 35083427 35083447 -207580906 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3735 55 4 0 chr1 35083456 35083910 -207580443 - L1PA8 LINE L1 -9 6163 5708 655 298 66 41 chr1 35084125 35084210 -207580143 - L2 LINE L2 -972 2342 2261 3307 198 10 31 chr1 35084210 35084763 -207579590 + L1MB4 LINE L1 5513 6051 -129 1502 111 134 15 chr1 35084763 35085025 -207579328 + AluSg SINE Alu 1 293 -17 3307 198 10 31 chr1 35085025 35085153 -207579200 + L1MB4 LINE L1 6051 6180 0 655 298 66 41 chr1 35085153 35085386 -207578967 - L2 LINE L2 -1053 2261 2016 441 251 52 52 chr1 35085390 35085601 -207578752 - MLT1K LTR MaLR 0 588 378 1006 332 128 23 chr1 35085861 35086714 -207577639 - L2 LINE L2 -1319 1995 1054 436 347 8 0 chr1 35086738 35086862 -207577491 - L2 LINE L2 -10 3262 3138 473 330 116 23 chr1 35087075 35087591 -207576762 + L2 LINE L2 1688 2251 -1063 21 0 0 0 chr1 35087787 35087808 -207576545 + AT_rich Low_complexity Low_complexity 1 21 0 246 211 174 28 chr1 35088376 35088485 -207575868 + L2 LINE L2 2198 2322 -992 3621 285 150 30 chr1 35088494 35088581 -207575772 - L2 LINE L2 -10 3303 3228 2569 45 0 0 chr1 35088581 35088890 -207575463 - AluY SINE Alu -2 309 1 3621 285 150 30 chr1 35088890 35091213 -207573140 - L2 LINE L2 -85 3228 600 808 310 203 10 chr1 35091215 35091998 -207572355 + L2 LINE L2 2315 3252 -20 211 327 173 5 chr1 35092021 35092229 -207572124 - L2 LINE L2 -2468 846 604 589 171 90 0 chr1 35092736 35092847 -207571506 + LTR16A1 LTR ERVL 1 121 -336 292 186 0 17 chr1 35093053 35093112 -207571241 + LTR16A1 LTR ERVL 400 457 0 192 282 207 41 chr1 35093445 35093764 -207570589 - L2 LINE L2 -87 3185 2814 221 337 86 27 chr1 35093864 35094235 -207570118 - L2 LINE L2 -710 2604 2212 318 309 105 12 chr1 35096037 35096199 -207568154 - MIR SINE MIR -81 181 5 361 292 117 15 chr1 35096978 35097115 -207567238 + L2 LINE L2 3121 3271 -1 284 264 275 6 chr1 35098180 35098358 -207565995 - MIR SINE MIR -3 259 34 242 347 65 42 chr1 35098630 35098846 -207565507 - MIR SINE MIR -11 251 31 583 295 80 21 chr1 35099829 35100066 -207564287 - MIR SINE MIR 0 262 12 1077 247 8 4 chr1 35101103 35101342 -207563011 - MIR SINE MIR -1 261 22 517 238 135 12 chr1 35102285 35102455 -207561898 + MIR SINE MIR 43 241 -21 197 254 17 17 chr1 35102470 35102529 -207561824 + MIR SINE MIR 194 252 -10 332 190 50 60 chr1 35102941 35103041 -207561312 + L2 LINE L2 3213 3311 -2 350 305 34 0 chr1 35103213 35103331 -207561022 - L2 LINE L2 -221 3051 2930 182 269 30 15 chr1 35103424 35103491 -207560862 - L2 LINE L2 -497 2817 2750 3592 195 20 0 chr1 35103576 35104216 -207560137 + MER82 DNA MER2_type 1 653 0 695 264 6 0 chr1 35104475 35104634 -207559719 - MIR SINE MIR -86 176 17 385 332 81 44 chr1 35104710 35104863 -207559490 - L2 LINE L2 0 3313 3167 378 0 0 0 chr1 35104863 35104905 -207559448 + (CA)n Simple_repeat Simple_repeat 2 43 0 385 332 81 44 chr1 35104905 35105046 -207559307 - L2 LINE L2 -146 3167 3008 790 148 136 12 chr1 35105310 35105472 -207558881 + MSTD LTR MaLR 1 182 -214 388 260 53 21 chr1 35105635 35105794 -207558559 + MIR SINE MIR 35 153 -55 1826 228 37 5 chr1 35106548 35106952 -207557401 + LTR16C LTR ERVL 75 491 0 401 299 92 64 chr1 35107044 35107468 -207556885 + MLT1K LTR MaLR 135 570 -18 295 149 0 0 chr1 35107500 35107547 -207556806 + L2 LINE L2 3261 3307 -6 199 297 44 44 chr1 35107546 35107637 -207556716 + MIR SINE MIR 102 192 -70 * 1235 195 90 100 chr1 35107648 35108048 -207556305 - MSTD LTR MaLR 0 396 1 633 270 88 5 chr1 35108370 35108574 -207555779 + Charlie8 DNA MER1_type 1 221 -2196 454 317 60 16 chr1 35108611 35108794 -207555559 - MIR SINE MIR -71 191 1 182 280 168 14 chr1 35109174 35109317 -207555036 - L2 LINE L2 -907 2407 2243 386 263 81 0 chr1 35109808 35109907 -207554446 - MIR SINE MIR -134 128 22 458 73 0 0 chr1 35109907 35109975 -207554378 - L1PA4 LINE L1 0 6155 6088 538 164 217 13 chr1 35110249 35110401 -207553952 + L1MD3 LINE L1 7813 7995 0 393 197 141 13 chr1 35110703 35110858 -207553495 - MIR SINE MIR -3 259 76 422 278 167 0 chr1 35111287 35111449 -207552904 + MIR SINE MIR 1 189 -73 207 139 0 0 chr1 35111715 35111751 -207552602 + (TG)n Simple_repeat Simple_repeat 1 36 0 299 261 235 17 chr1 35112495 35112614 -207551739 - MIR SINE MIR -20 242 98 1672 178 196 60 chr1 35112726 35112814 -207551539 - MLT1F1 LTR MaLR -23 544 469 1358 192 30 15 chr1 35112814 35113085 -207551268 + ORSL DNA AcHobo 1 275 0 1672 178 196 60 chr1 35113085 35113475 -207550878 - MLT1F1 LTR MaLR -98 469 1 457 314 101 16 chr1 35113480 35113738 -207550615 + L2 LINE L2 3034 3313 0 203 343 29 19 chr1 35114515 35114620 -207549733 - L2 LINE L2 -467 2847 2742 570 345 45 39 chr1 35115633 35115848 -207548505 + L2 LINE L2 2913 3125 -147 261 0 0 0 chr1 35115848 35115877 -207548476 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 306 0 0 0 chr1 35115876 35115910 -207548443 + (TG)n Simple_repeat Simple_repeat 2 35 0 570 345 45 39 chr1 35115877 35116051 -207548302 + L2 LINE L2 3125 3271 -1 471 296 47 6 chr1 35116907 35117079 -207547274 + MIR SINE MIR 17 195 -67 535 248 38 25 chr1 35117087 35117244 -207547109 + MER5B DNA MER1_type 20 178 0 825 176 43 53 chr1 35117603 35117791 -207546562 - MER5A DNA MER1_type -3 186 1 199 298 144 29 chr1 35118526 35118630 -207545723 + MIR3 SINE MIR 84 199 -9 207 189 0 0 chr1 35118802 35118855 -207545498 + (TA)n Simple_repeat Simple_repeat 1 53 0 955 255 9 9 chr1 35118968 35119184 -207545169 - MIR SINE MIR 0 262 47 2222 125 0 0 chr1 35119320 35119632 -207544721 - AluSx SINE Alu 0 312 1 221 271 197 8 chr1 35120599 35120721 -207543632 + L2 LINE L2 2868 3012 -260 223 312 13 0 chr1 35120844 35120921 -207543432 + L2 LINE L2 3182 3259 -13 180 0 0 0 chr1 35120921 35120941 -207543412 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 545 294 139 5 chr1 35121223 35121262 -207543091 + MIR SINE MIR 31 63 -199 2049 127 0 0 chr1 35121262 35121553 -207542800 + AluSg SINE Alu 1 291 -19 545 294 139 5 chr1 35121553 35121714 -207542639 + MIR SINE MIR 63 258 -4 281 182 0 18 chr1 35121891 35121946 -207542407 + L2 LINE L2 3210 3263 -9 586 251 50 6 chr1 35122050 35122229 -207542124 + L2 LINE L2 3123 3309 -4 1863 190 199 2 chr1 35122253 35122675 -207541678 - MLT1D LTR MaLR 0 505 1 839 256 61 8 chr1 35123394 35123410 -207540943 - MIR SINE MIR -2 260 246 2030 80 6 98 chr1 35123410 35123737 -207540616 + AluSg SINE Alu 1 297 -13 839 256 61 8 chr1 35123737 35123966 -207540387 - MIR SINE MIR -16 246 2 2325 119 73 14 chr1 35124025 35124369 -207539984 + THE1B LTR MaLR 1 364 0 511 282 50 22 chr1 35124846 35125027 -207539326 - MIR SINE MIR -59 203 18 981 301 128 13 chr1 35125317 35125435 -207538918 - L2 LINE L2 -5 3308 3205 955 171 36 99 chr1 35125435 35125657 -207538696 + MER3 DNA MER1_type 1 208 -1 981 301 128 13 chr1 35125657 35126333 -207538020 - L2 LINE L2 -108 3205 2396 227 279 22 34 chr1 35126620 35126799 -207537554 + (TG)n Simple_repeat Simple_repeat 1 177 0 2092 122 7 0 chr1 35128599 35128903 -207535450 - AluSx SINE Alu -6 306 1 980 236 23 34 chr1 35128967 35129230 -207535123 + MIR SINE MIR 3 262 0 845 275 74 30 chr1 35129331 35129695 -207534658 - L1MC4a LINE L1 -1880 5928 5549 806 234 29 0 chr1 35130092 35130263 -207534090 + MLT1G1 LTR MaLR 2 177 -418 337 252 87 0 chr1 35130260 35130363 -207533990 + MLT1G LTR MaLR 479 590 0 * 482 313 17 34 chr1 35130403 35130579 -207533774 - MER5B DNA MER1_type 0 178 6 499 280 180 5 chr1 35130593 35130782 -207533571 + MIR SINE MIR 19 240 -22 361 203 25 25 chr1 35131582 35131661 -207532692 + MIR3 SINE MIR 76 154 -54 419 178 33 0 chr1 35131755 35131845 -207532508 + MER117 DNA MER1_type 55 147 -50 24 32 0 0 chr1 35131978 35132009 -207532344 + AT_rich Low_complexity Low_complexity 1 31 0 438 248 0 83 chr1 35132294 35132451 -207531902 - L1ME3 LINE L1 -5 6157 6014 722 281 79 30 chr1 35132461 35132931 -207531422 - L1MC4a LINE L1 -768 5378 4886 494 236 28 14 chr1 35133186 35133330 -207531023 - L1ME4a LINE L1 -11 6110 5965 269 26 26 0 chr1 35133333 35133371 -207530982 + (CA)n Simple_repeat Simple_repeat 1 39 0 1043 144 11 6 chr1 35133641 35133815 -207530538 + AluSg/x SINE Alu 137 311 -1 674 125 9 0 chr1 35133817 35133929 -207530424 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 471 271 101 43 chr1 35134066 35134537 -207529816 - L1ME4a LINE L1 -207 5963 5441 709 220 93 20 chr1 35134537 35134819 -207529534 - LTR33A LTR ERVL 0 684 292 667 212 224 29 chr1 35134871 35135112 -207529241 - LTR50 LTR ERVL -507 288 1 354 238 156 38 chr1 35135129 35135289 -207529064 - L1ME LINE L1 -367 5754 5576 341 349 40 8 chr1 35136379 35136505 -207527848 + L2 LINE L2 3184 3313 0 249 254 45 0 chr1 35137044 35137111 -207527242 - MIR SINE MIR -71 137 68 206 339 0 0 chr1 35137103 35137165 -207527188 - MIR SINE MIR 0 262 201 * 354 222 55 3 chr1 35137548 35137644 -207526709 - MER5A DNA MER1_type -80 98 9 487 278 127 24 chr1 35138155 35138367 -207525986 - MIR SINE MIR -6 256 23 455 281 30 7 chr1 35138524 35138659 -207525694 + MLT1J LTR MaLR 33 170 -341 485 238 66 48 chr1 35138685 35138921 -207525432 + MLT1J LTR MaLR 224 503 -8 268 268 52 21 chr1 35138989 35139086 -207525267 + MER5B DNA MER1_type 60 159 -19 3389 49 2 7 chr1 35139353 35139780 -207524573 + L1PA8 LINE L1 5747 6171 -1 567 299 69 23 chr1 35139848 35140065 -207524288 - MIR SINE MIR -2 260 34 253 254 42 14 chr1 35141130 35141201 -207523152 - L2 LINE L2 0 3313 3241 304 299 82 22 chr1 35141334 35141468 -207522885 + L2 LINE L2 2932 3073 -199 361 250 10 29 chr1 35141534 35141638 -207522715 - MIR SINE MIR -149 113 12 787 282 26 18 chr1 35141839 35142066 -207522287 - MIR SINE MIR -31 231 3 268 287 47 118 chr1 35142089 35142427 -207521926 - L2 LINE L2 -44 3228 2915 2023 111 12 49 chr1 35144064 35144388 -207519965 + AluSx SINE Alu 1 312 0 180 302 104 10 chr1 35145255 35145351 -207519002 - MIR SINE MIR -2 260 156 790 242 161 51 chr1 35145356 35145748 -207518605 + MLT1J2 LTR MaLR 16 450 0 469 204 39 0 chr1 35145764 35145867 -207518486 - MIR SINE MIR -109 153 47 188 318 206 29 chr1 35145939 35146288 -207518065 - L2 LINE L2 -1198 2116 1706 964 280 85 33 chr1 35146682 35147166 -207517187 + MLT1J LTR MaLR 2 448 -2 713 253 40 8 chr1 35147544 35147746 -207516607 - MLT1L LTR MaLR 0 615 382 308 323 25 38 chr1 35148317 35148475 -207515878 + L2 LINE L2 2619 2774 -540 503 303 98 41 chr1 35148746 35148990 -207515363 + MIR SINE MIR 5 262 0 869 236 121 43 chr1 35149023 35149345 -207515008 + MER7A DNA MER2_type 2 346 0 2207 92 0 10 chr1 35149541 35149846 -207514507 - AluSx SINE Alu -6 306 5 1407 160 38 48 chr1 35149973 35150246 -207514107 + MER33 DNA MER1_type 3 274 -2311 2193 83 10 3 chr1 35150246 35150546 -207513807 + AluSx SINE Alu 1 302 -10 1407 160 38 48 chr1 35150546 35150585 -207513768 + MER33 DNA MER1_type 274 312 -12 536 296 109 30 chr1 35151018 35151248 -207513105 + MIR SINE MIR 2 249 -13 268 275 40 27 chr1 35152550 35152699 -207511654 + L1ME LINE L1 5622 5772 -349 262 188 0 62 chr1 35152994 35153058 -207511295 + MER69 DNA AcHobo 2376 2435 -91 182 304 139 25 chr1 35153110 35153189 -207511164 - L3 LINE CR1 -3 1574 1487 * 230 314 41 41 chr1 35153169 35153290 -207511063 - L2 LINE L2 -2 3270 3150 376 277 105 50 chr1 35153317 35153555 -207510798 - L3 LINE CR1 -62 1515 1265 422 290 55 75 chr1 35154243 35154401 -207509952 + MIR SINE MIR 57 212 -50 2034 117 3 3 chr1 35154401 35154701 -207509652 + AluSx SINE Alu 1 300 -12 422 290 55 75 chr1 35154701 35154742 -207509611 + MIR SINE MIR 212 252 -10 297 246 127 27 chr1 35154779 35154889 -207509464 - L3 LINE CR1 -489 1088 968 274 270 180 22 chr1 35155051 35155229 -207509124 - L1ME4a LINE L1 -223 5898 5693 1176 246 81 54 chr1 35155252 35155696 -207508657 - L3 LINE CR1 -636 941 486 439 291 35 7 chr1 35156150 35156291 -207508062 + MIR SINE MIR 52 196 -66 547 278 70 59 chr1 35156313 35156586 -207507767 + Charlie8 DNA MER1_type 1 276 -2141 209 231 0 19 chr1 35156731 35156783 -207507570 + MIR SINE MIR 105 155 -107 1009 249 14 5 chr1 35157995 35158208 -207506145 + MER58A DNA MER1_type 10 224 0 193 258 97 0 chr1 35158320 35158382 -207505971 + L2 LINE L2 1752 1819 -1495 423 217 93 39 chr1 35158605 35158734 -207505619 + MIR3 SINE MIR 15 150 -58 187 242 10 131 chr1 35159354 35159453 -207504900 - L2 LINE L2 -38 3234 3148 1298 165 139 11 chr1 35159465 35159732 -207504621 + AluJb SINE Alu 1 301 -11 265 321 24 0 chr1 35159962 35160046 -207504307 - MLT1K LTR MaLR -9 579 494 1046 256 122 48 chr1 35160396 35160829 -207503524 - L2 LINE L2 -4 3309 2845 306 234 196 9 chr1 35160949 35161056 -207503297 - MIR3 SINE MIR -67 141 15 2056 167 7 52 chr1 35161645 35162053 -207502300 + MLT1B LTR MaLR 1 390 0 443 275 135 34 chr1 35162144 35162351 -207502002 + L2 LINE L2 2827 3054 -218 348 306 43 11 chr1 35162603 35162795 -207501558 - LTR16A LTR ERVL -254 196 2 240 224 271 0 chr1 35163656 35163741 -207500612 - MIR SINE MIR -67 141 34 296 330 21 0 chr1 35164039 35164136 -207500217 + MER91A DNA MER1_type 57 155 -41 289 246 15 0 chr1 35164875 35164940 -207499413 + MIR SINE MIR 82 147 -115 356 299 19 19 chr1 35165039 35165146 -207499207 - MIR SINE MIR -1 261 155 186 43 0 0 chr1 35165680 35165703 -207498650 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2161 145 39 26 chr1 35165703 35165750 -207498603 - L1MB3 LINE L1 -1 6182 6137 2044 128 7 0 chr1 35165750 35166048 -207498305 - AluSx SINE Alu -12 300 1 2161 145 39 26 chr1 35166048 35166415 -207497938 - L1MB3 LINE L1 -46 6137 5763 494 301 27 7 chr1 35166463 35166609 -207497744 - MIR SINE MIR -107 155 7 406 285 62 21 chr1 35167701 35167845 -207496508 + MER91B DNA MER1_type 36 185 -5 462 281 131 50 chr1 35167861 35168082 -207496271 - MIR SINE MIR -14 248 10 420 216 144 18 chr1 35168160 35168327 -207496026 - MER5A DNA MER1_type -1 188 1 207 0 0 0 chr1 35168921 35168944 -207495409 + (CTCTG)n Simple_repeat Simple_repeat 3 25 0 473 208 119 0 chr1 35169136 35169237 -207495116 - MIR SINE MIR -78 184 72 3681 196 17 35 chr1 35169237 35170103 -207494250 + L1ME1 LINE L1 5319 6161 -5 225 348 116 13 chr1 35170247 35170402 -207493951 - MIR SINE MIR -26 236 66 542 261 45 40 chr1 35170636 35170812 -207493541 + MIR SINE MIR 45 221 -41 1324 167 32 39 chr1 35170887 35171168 -207493185 - L1MB4 LINE L1 0 6180 5902 1781 147 42 7 chr1 35171352 35171638 -207492715 + MLT1C LTR MaLR 145 440 -27 709 265 19 14 chr1 35171645 35171856 -207492497 + MLT1G LTR MaLR 32 243 -347 189 222 0 74 chr1 35172267 35172321 -207492032 - L2 LINE L2 -1 3312 3263 * 243 310 130 0 chr1 35172290 35172390 -207491963 - MIR SINE MIR -14 248 136 582 275 57 10 chr1 35173245 35173438 -207490915 - MIR SINE MIR -24 238 37 1763 157 0 17 chr1 35173683 35173976 -207490377 - AluJo SINE Alu -24 288 1 295 261 133 8 chr1 35174532 35174658 -207489695 + MIR SINE MIR 63 208 -54 290 179 0 64 chr1 35175180 35175258 -207489095 - L1MB7 LINE L1 0 6184 6112 317 333 32 0 chr1 35175720 35175846 -207488507 - L2 LINE L2 -18 3254 3125 214 298 0 0 chr1 35176027 35176074 -207488279 - L2 LINE L2 -36 3277 3231 358 241 43 26 chr1 35176104 35176220 -207488133 - MIR SINE MIR -31 231 114 1706 158 50 19 chr1 35176252 35176599 -207487754 + MSTA LTR MaLR 7 357 -75 7750 165 39 2 chr1 35176599 35177869 -207486484 + MSTA-int LTR MaLR 334 1651 0 1081 127 55 17 chr1 35177869 35178050 -207486303 + MSTA LTR MaLR 1 188 -240 1739 141 57 42 chr1 35178051 35178385 -207485968 + MST-int LTR MaLR 296 634 -1017 * 2854 222 48 30 chr1 35178383 35179473 -207484880 + L1ME1 LINE L1 5058 6162 -4 2255 200 66 28 chr1 35179490 35180064 -207484289 + L1ME1 LINE L1 5290 5885 -281 1206 178 5 5 chr1 35180094 35180307 -207484046 + AluJo SINE Alu 78 290 -22 563 207 216 29 chr1 35180307 35180515 -207483838 + L1ME1 LINE L1 5900 6146 -20 2403 292 46 50 chr1 35180518 35180619 -207483734 + L1M4 LINE L1 2963 3063 -3083 1280 157 19 5 chr1 35180619 35180835 -207483518 - MER20 DNA MER1_type 0 219 1 2403 292 46 50 chr1 35180835 35181667 -207482686 + L1M4 LINE L1 3063 3896 -2250 1630 160 216 17 chr1 35181667 35182024 -207482329 - MSTA LTR MaLR 0 428 1 2403 292 46 50 chr1 35182024 35182162 -207482191 + L1M4 LINE L1 3896 4033 -2113 2424 57 0 3 chr1 35182162 35182462 -207481891 - AluY SINE Alu -12 299 1 2403 292 46 50 chr1 35182462 35183101 -207481252 + L1M4 LINE L1 4033 4669 -1477 759 252 79 57 chr1 35183075 35183227 -207481126 + L1MC4a LINE L1 4353 4500 -1646 * 2028 112 4 0 chr1 35183227 35183505 -207480848 + AluSq SINE Alu 1 279 -34 306 0 0 0 chr1 35183509 35183543 -207480810 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 759 252 79 57 chr1 35183543 35184055 -207480298 + L1MC4a LINE L1 4502 5037 -1109 580 270 153 5 chr1 35184085 35184281 -207480072 - MIR SINE MIR -27 235 11 418 292 69 0 chr1 35184301 35184503 -207479850 + L1MC4a LINE L1 5063 5278 -868 382 141 12 82 chr1 35184551 35184624 -207479729 + THE1C LTR MaLR 3 69 -295 3134 193 63 61 chr1 35184624 35186010 -207478343 - MER52A LTR ERV1 0 1278 17 1444 158 65 24 chr1 35186011 35186303 -207478050 + THE1C LTR MaLR 72 375 0 726 276 75 67 chr1 35186303 35186888 -207477465 + L1MC4a LINE L1 5307 5817 -345 * 3769 171 92 76 chr1 35186880 35187932 -207476421 + L1MD2 LINE L1 5200 6274 -85 2355 116 33 30 chr1 35187932 35188295 -207476058 - THE1B LTR MaLR 0 364 1 3769 171 92 76 chr1 35188295 35188380 -207475973 + L1MD2 LINE L1 6274 6356 -3 186 227 0 0 chr1 35188835 35188879 -207475474 + L2 LINE L2 2914 2957 -357 259 276 13 0 chr1 35189032 35189118 -207475235 + L2 LINE L2 2899 2985 -328 270 275 0 25 chr1 35189196 35189276 -207475077 + L2 LINE L2 3160 3237 -76 371 267 19 19 chr1 35190483 35190588 -207473765 - MIR SINE MIR -1 261 157 333 343 22 17 chr1 35190662 35190843 -207473510 + MLT2E LTR ERVL 33 214 -414 363 248 0 53 chr1 35190971 35191084 -207473269 + LTR33A LTR ERVL 417 523 0 351 243 136 0 chr1 35191087 35191190 -207473163 - MIR SINE MIR -103 159 43 1458 172 12 120 chr1 35192739 35192776 -207471577 - MLT1A1 LTR MaLR 0 365 326 1984 126 9 9 chr1 35192776 35193093 -207471260 + L1PA13 LINE L1 5840 6156 -7 1458 172 12 120 chr1 35193093 35193462 -207470891 - MLT1A1 LTR MaLR -39 326 3 1139 209 23 119 chr1 35193955 35194585 -207469768 - MLT2B3 LTR ERVL -2 518 6 339 308 246 20 chr1 35194623 35194818 -207469535 - L2 LINE L2 -498 2816 2578 576 270 17 82 chr1 35194846 35195032 -207469321 - L2 LINE L2 -911 2403 2233 2254 105 0 0 chr1 35195032 35195338 -207469015 + AluSx SINE Alu 1 306 -6 576 270 17 82 chr1 35195338 35195384 -207468969 - L2 LINE L2 -1081 2233 2186 851 258 34 61 chr1 35195384 35195797 -207468556 - MLT1I LTR MaLR 0 409 38 344 158 0 14 chr1 35195885 35195951 -207468402 + Alu SINE Alu 7 51 -251 4378 104 28 26 chr1 35196613 35197003 -207467350 - MER39B LTR ERV1 0 653 260 1868 158 3 6 chr1 35197003 35197314 -207467039 - AluJb SINE Alu -2 310 1 4378 104 28 26 chr1 35197314 35197575 -207466778 - MER39B LTR ERV1 -393 260 1 374 243 164 13 chr1 35198082 35198234 -207466119 - MIR SINE MIR -80 182 8 1143 205 9 26 chr1 35198386 35198586 -207465767 - L1MC4 LINE L1 -1155 6887 6690 2013 86 72 0 chr1 35198586 35198865 -207465488 - AluSq SINE Alu -14 299 1 1143 205 9 26 chr1 35198865 35198893 -207465460 - L1MC4 LINE L1 -1352 6690 6663 253 304 135 83 chr1 35200750 35201039 -207463314 + L2 LINE L2 2938 3241 -31 307 245 75 21 chr1 35201163 35201257 -207463096 + MER5A DNA MER1_type 14 112 -77 433 292 180 0 chr1 35201338 35201499 -207462854 + MER91A DNA MER1_type 1 190 -6 240 258 13 142 chr1 35201581 35201814 -207462539 + L2 LINE L2 2860 3062 -210 203 264 135 98 chr1 35202386 35202509 -207461844 + MIR3 SINE MIR 21 153 -55 718 292 10 5 chr1 35202509 35202701 -207461652 - MER117 DNA MER1_type -1 196 4 203 264 135 98 chr1 35202701 35202740 -207461613 + MIR3 SINE MIR 153 189 -19 357 24 0 0 chr1 35203296 35203338 -207461015 + (TG)n Simple_repeat Simple_repeat 1 42 0 334 293 100 61 chr1 35204006 35204235 -207460118 - L2 LINE L2 -225 3047 2810 2124 110 3 10 chr1 35205324 35205632 -207458721 + AluSg SINE Alu 1 306 -4 1841 162 3 0 chr1 35205864 35206166 -207458187 - AluSx SINE Alu -9 303 1 188 290 81 0 chr1 35206417 35206479 -207457874 + MIR SINE MIR 114 180 -82 677 223 4 19 chr1 35206907 35207169 -207457184 + CT-rich Low_complexity Low_complexity 1 258 0 832 228 6 0 chr1 35207177 35207339 -207457014 - AluJb SINE Alu -17 295 133 192 303 15 15 chr1 35207407 35207473 -207456880 - MIR SINE MIR -163 99 34 613 234 104 43 chr1 35208014 35208245 -207456108 - MIR SINE MIR -14 248 4 206 123 0 140 chr1 35208282 35208339 -207456014 - L2 LINE L2 -219 3053 3005 184 224 86 17 chr1 35208870 35208928 -207455425 + L2 LINE L2 3188 3249 -64 772 265 85 9 chr1 35209229 35209452 -207454901 + MIR SINE MIR 1 240 -22 355 286 135 28 chr1 35209887 35210139 -207454214 + L3 LINE CR1 1191 1469 -108 437 293 46 46 chr1 35210155 35210329 -207454024 - MIR SINE MIR -8 254 81 206 304 120 22 chr1 35210340 35210432 -207453921 + MIR SINE MIR 58 158 -104 694 225 12 0 chr1 35210664 35210824 -207453529 + MER103 DNA DNA 2 163 -3 650 261 22 0 chr1 35212571 35212709 -207451644 + MIR SINE MIR 8 148 -114 477 272 69 139 chr1 35212777 35213258 -207451095 - L2 LINE L2 -5 3267 2821 497 269 42 24 chr1 35214097 35214264 -207450089 - MIR SINE MIR -70 192 23 196 232 145 0 chr1 35214512 35214581 -207449772 + L2 LINE L2 3006 3084 -188 708 292 170 18 chr1 35214773 35215156 -207449197 - L2 LINE L2 -337 2977 2537 1947 147 3 3 chr1 35215202 35215515 -207448838 + AluSq SINE Alu 1 313 0 624 202 9 0 chr1 35215688 35215797 -207448556 + FLAM_A SINE Alu 1 110 -32 216 0 0 0 chr1 35215807 35215831 -207448522 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 195 237 0 0 chr1 35216259 35216297 -207448056 - L2 LINE L2 -3 3310 3273 481 276 55 0 chr1 35216451 35216578 -207447775 - MIR SINE MIR -81 181 48 190 333 0 29 chr1 35216624 35216693 -207447660 - L2 LINE L2 -555 2759 2693 303 28 0 0 chr1 35217100 35217136 -207447217 + (TG)n Simple_repeat Simple_repeat 2 37 0 420 263 90 15 chr1 35217821 35217954 -207446399 + MIR SINE MIR 12 154 -108 2522 219 66 57 chr1 35218071 35218363 -207445990 - MER72 LTR ERV1 -2 720 432 2669 95 17 6 chr1 35218363 35218721 -207445632 - THE1B LTR MaLR -2 362 1 2522 219 66 57 chr1 35218721 35218857 -207445496 - MER72 LTR ERV1 -290 432 299 2223 105 0 0 chr1 35218857 35219161 -207445192 - AluSq SINE Alu -9 304 1 2522 219 66 57 chr1 35219161 35219445 -207444908 - MER72 LTR ERV1 -423 299 1 343 324 10 0 chr1 35220436 35220538 -207443815 + MIR SINE MIR 78 180 -82 286 29 0 0 chr1 35220539 35220573 -207443780 + LTR7 LTR ERV1 1 34 -416 16613 93 24 12 chr1 35220574 35223005 -207441348 + HERVH LTR ERV1 404 2987 -4726 863 162 20 0 chr1 35222999 35223147 -207441206 + HERVH LTR ERV1 3140 3290 -4423 * 3433 110 6 6 chr1 35223137 35223639 -207440714 + HERVH LTR ERV1 3492 3993 -3720 4268 155 1 3 chr1 35223642 35224301 -207440052 + HERVH LTR ERV1 4489 5146 -2567 1431 111 23 9 chr1 35224305 35224522 -207439831 + HERVH LTR ERV1 5600 5819 -1894 * 2453 98 48 13 chr1 35224520 35224899 -207439454 + HERVH LTR ERV1 7322 7713 0 1486 149 119 75 chr1 35224899 35225328 -207439025 + LTR7 LTR ERV1 1 448 -2 232 274 39 59 chr1 35225631 35225733 -207438620 - L2 LINE L2 -6 3307 3208 2778 99 0 0 chr1 35226652 35227016 -207437337 - THE1B LTR MaLR 0 364 1 2118 259 137 79 chr1 35228931 35228987 -207435366 + L2 LINE L2 970 1021 -2293 1779 144 82 25 chr1 35228987 35229342 -207435011 - THE1C LTR MaLR 0 375 1 2118 259 137 79 chr1 35229342 35230568 -207433785 + L2 LINE L2 1021 2327 -987 1552 156 0 66 chr1 35230568 35230765 -207433588 + LTR69 LTR ERVL 315 489 -99 1917 112 10 23 chr1 35230765 35231068 -207433285 - AluSx SINE Alu -13 299 1 1552 156 0 66 chr1 35231068 35231159 -207433194 + LTR69 LTR ERVL 489 584 -4 373 260 40 10 chr1 35231225 35231325 -207433028 - MLT1H LTR MaLR -202 347 245 1975 213 53 28 chr1 35231376 35231870 -207432483 - MER74B LTR ERVL -67 555 50 590 226 77 51 chr1 35231863 35232097 -207432256 - MLT1H LTR MaLR -295 254 15 * 333 351 192 3 chr1 35232115 35232456 -207431897 + L2 LINE L2 2689 3084 -229 930 210 0 0 chr1 35232509 35232685 -207431668 - MIR SINE MIR -1 261 86 507 229 117 45 chr1 35232680 35232859 -207431494 + L2 LINE L2 3122 3313 0 * 188 342 186 18 chr1 35232871 35233058 -207431295 + L2 LINE L2 2495 2649 -665 2205 111 0 0 chr1 35233058 35233356 -207430997 + AluSg SINE Alu 1 298 -12 188 342 186 18 chr1 35233356 35233566 -207430787 + L2 LINE L2 2649 2959 -355 186 191 0 0 chr1 35233657 35233699 -207430654 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 1695 174 23 0 chr1 35233762 35234061 -207430292 - AluSx SINE Alu -6 306 1 336 294 151 8 chr1 35234181 35234300 -207430053 - L2 LINE L2 -127 3145 3010 281 294 49 49 chr1 35234310 35234412 -207429941 + L2 LINE L2 3139 3240 -32 1459 141 122 11 chr1 35234434 35234696 -207429657 + AluSx SINE Alu 1 291 -21 589 157 104 22 chr1 35234717 35234851 -207429502 - L1MB3 LINE L1 -7 6176 6032 392 233 150 52 chr1 35235197 35235390 -207428963 + L2 LINE L2 3060 3271 -1 273 140 0 0 chr1 35237267 35237324 -207427029 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 257 333 11 11 chr1 35237327 35237414 -207426939 - L2 LINE L2 -1 3271 3185 1694 222 106 58 chr1 35237476 35237993 -207426360 + MLT1F LTR MaLR 1 542 0 1092 167 22 57 chr1 35238858 35239085 -207425268 - MER20 DNA MER1_type 0 219 1 338 220 347 0 chr1 35240034 35240207 -207424146 - MIR SINE MIR -10 252 20 1342 239 117 18 chr1 35240547 35240990 -207423363 + MLT1D LTR MaLR 19 505 0 233 326 77 22 chr1 35241165 35241346 -207423007 - L2 LINE L2 -472 2842 2652 254 319 14 0 chr1 35242304 35242373 -207421980 + MIR SINE MIR 8 77 -185 184 256 12 49 chr1 35242369 35242451 -207421902 + MIR SINE MIR 184 262 0 * 188 67 33 0 chr1 35242728 35242758 -207421595 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 666 302 21 92 chr1 35242759 35243424 -207420929 - L2 LINE L2 -2 3270 2656 357 330 0 52 chr1 35243801 35243916 -207420437 - L2 LINE L2 0 3272 3164 2549 58 0 0 chr1 35243934 35244243 -207420110 - AluY SINE Alu -2 309 1 25 51 0 0 chr1 35244255 35244294 -207420059 + AT_rich Low_complexity Low_complexity 1 39 0 718 266 5 22 chr1 35244388 35244572 -207419781 + LTR33 LTR ERVL 39 219 -302 402 235 25 25 chr1 35244641 35244760 -207419593 + LTR33 LTR ERVL 403 521 0 622 277 36 31 chr1 35244760 35244984 -207419369 - L2 LINE L2 -254 3059 2835 247 261 46 0 chr1 35245090 35245155 -207419198 - MIR SINE MIR -2 260 193 407 267 87 7 chr1 35245241 35245391 -207418962 + LTR33 LTR ERVL 1 162 -359 923 231 20 0 chr1 35245391 35245590 -207418763 - MIR SINE MIR -55 207 5 288 0 0 0 chr1 35247097 35247129 -207417224 + (TG)n Simple_repeat Simple_repeat 2 33 0 327 297 28 50 chr1 35247260 35247442 -207416911 + MER5B DNA MER1_type 1 178 0 326 241 18 0 chr1 35247713 35247825 -207416528 + (TTCA)n Simple_repeat Simple_repeat 4 117 0 262 280 0 13 chr1 35247849 35247924 -207416429 + (TTCA)n Simple_repeat Simple_repeat 2 75 0 230 180 16 0 chr1 35247942 35248003 -207416350 + (TTCA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr1 35248499 35248527 -207415826 + AT_rich Low_complexity Low_complexity 1 28 0 183 375 22 92 chr1 35248775 35248959 -207415394 - L2 LINE L2 -97 3175 3005 270 271 104 31 chr1 35249098 35249194 -207415159 - L2 LINE L2 -2 3270 3168 398 274 45 45 chr1 35251819 35251998 -207412355 - MLT1J2 LTR MaLR 0 450 272 622 154 73 0 chr1 35252021 35252144 -207412209 + L1MB3 LINE L1 6050 6181 -2 2118 102 0 0 chr1 35252154 35252486 -207411867 + AluSg SINE Alu 1 332 0 685 168 44 84 chr1 35252511 35252714 -207411639 - MER106B DNA MER1_type -468 591 397 340 185 54 54 chr1 35252773 35252865 -207411488 - MLT1I LTR MaLR -278 131 40 246 281 67 74 chr1 35253141 35253276 -207411077 + L2 LINE L2 3107 3240 -32 509 228 7 0 chr1 35253298 35253434 -207410919 + GA-rich Low_complexity Low_complexity 4 140 0 449 185 109 0 chr1 35253790 35253882 -207410471 - MIR SINE MIR -62 146 45 369 43 0 0 chr1 35253954 35254001 -207410352 + (TC)n Simple_repeat Simple_repeat 1 47 0 254 293 53 0 chr1 35254779 35254854 -207409499 + ERVL LTR ERVL 1365 1443 -4321 803 322 51 34 chr1 35255177 35255944 -207408409 + ERVL LTR ERVL 4415 5259 -505 1369 290 65 8 chr1 35256269 35256762 -207407591 + LTR33 LTR ERVL 1 521 0 924 83 0 0 chr1 35257056 35257177 -207407176 - AluSg/x SINE Alu -19 291 171 252 317 81 16 chr1 35257625 35257748 -207406605 - MIR SINE MIR -57 205 75 230 372 53 0 chr1 35257797 35257891 -207406462 - L2 LINE L2 -3 3310 3212 191 299 198 14 chr1 35257906 35258123 -207406230 - L2 LINE L2 -698 2616 2360 273 98 0 0 chr1 35258886 35258927 -207405426 + (TG)n Simple_repeat Simple_repeat 2 42 0 2054 54 8 8 chr1 35259569 35259830 -207404523 - AluY SINE Alu -14 297 37 302 267 104 79 chr1 35259854 35260234 -207404119 + MLT1G LTR MaLR 16 577 -4 2305 78 7 3 chr1 35260458 35260754 -207403599 - THE1A LTR MaLR 0 355 59 1042 182 0 0 chr1 35260827 35261003 -207403350 - MER58A DNA MER1_type 0 224 49 1632 164 116 3 chr1 35261994 35262305 -207402048 + MER7A DNA MER2_type 2 345 -1 1576 149 43 0 chr1 35262684 35262965 -207401388 + L1MA7 LINE L1 5994 6286 -5 258 237 17 0 chr1 35263174 35263233 -207401120 - MLT1K LTR MaLR 0 588 529 339 192 356 0 chr1 35263364 35263432 -207400921 - MER5A DNA MER1_type -6 183 140 2170 103 13 0 chr1 35263432 35263734 -207400619 - AluSc SINE Alu -3 306 1 339 192 356 0 chr1 35263734 35263769 -207400584 - MER5A DNA MER1_type -49 140 43 414 79 0 0 chr1 35263770 35263833 -207400520 + (CTG)n Simple_repeat Simple_repeat 1 63 0 619 287 13 0 chr1 35264939 35265096 -207399257 - L3 LINE CR1 -72 1505 1347 2111 92 10 3 chr1 35265647 35265940 -207398413 - AluSg SINE Alu -15 295 1 2051 127 0 13 chr1 35266046 35266361 -207397992 - AluSx SINE Alu -1 311 1 230 246 16 33 chr1 35266365 35266426 -207397927 + L2 LINE L2 3190 3249 -23 183 219 0 0 chr1 35267269 35267301 -207397052 - MIR SINE MIR -21 241 210 252 296 49 12 chr1 35267307 35267388 -207396965 + L2 LINE L2 3212 3295 -18 587 238 77 0 chr1 35268461 35268604 -207395749 + MIR3 SINE MIR 45 198 -10 22 0 0 0 chr1 35268675 35268697 -207395656 + AT_rich Low_complexity Low_complexity 1 22 0 1528 169 49 3 chr1 35268704 35268988 -207395365 - AluJb SINE Alu -15 297 1 466 223 45 9 chr1 35269098 35269210 -207395143 + MIR SINE MIR 35 150 -112 348 230 0 92 chr1 35270249 35270336 -207394017 - L2 LINE L2 -32 3281 3203 304 322 130 29 chr1 35270358 35270566 -207393787 - L2 LINE L2 -408 2906 2678 296 310 126 35 chr1 35270894 35271125 -207393228 - MIR SINE MIR -8 254 8 287 286 19 76 chr1 35271471 35271576 -207392777 + MIR SINE MIR 7 105 -157 532 264 90 0 chr1 35271593 35271760 -207392593 + MIR SINE MIR 81 262 0 1164 126 6 0 chr1 35271851 35272042 -207392311 - AluSg/x SINE Alu 0 306 115 913 278 121 3 chr1 35272473 35272829 -207391524 + L2 LINE L2 1715 2112 -1202 664 195 0 8 chr1 35273774 35273902 -207390451 - L1PA13 LINE L1 -5 6158 6032 1642 120 8 0 chr1 35273912 35274162 -207390191 - AluSx SINE Alu 0 312 61 685 311 98 3 chr1 35274166 35274513 -207389840 + L2 LINE L2 2691 3063 -250 635 279 50 41 chr1 35274565 35274906 -207389447 - L1MEd LINE L1 -5215 904 561 783 231 64 15 chr1 35275204 35275407 -207388946 + L2 LINE L2 3100 3312 -1 209 344 0 55 chr1 35276545 35276673 -207387680 - L2 LINE L2 -208 3064 2944 756 255 182 38 chr1 35276684 35277052 -207387301 + L2 LINE L2 2892 3312 -1 195 367 0 0 chr1 35277446 35277506 -207386847 + L3 LINE CR1 1516 1575 -2 310 347 33 8 chr1 35277866 35277987 -207386366 - L2 LINE L2 -4 3268 3145 1466 285 65 14 chr1 35278338 35278829 -207385524 - LTR33 LTR ERVL 0 521 6 1923 166 0 0 chr1 35278859 35279149 -207385204 - AluJb SINE Alu -22 290 1 305 237 10 41 chr1 35279230 35279327 -207385026 - MIR SINE MIR -112 150 57 828 144 30 30 chr1 35279329 35279461 -207384892 - FLAM_C SINE Alu 0 133 2 194 181 31 14 chr1 35280754 35280831 -207383522 - L2 LINE L2 -1 3312 3261 181 164 18 36 chr1 35281373 35281428 -207382925 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 2634 100 29 40 chr1 35281432 35281811 -207382542 + THE1C LTR MaLR 1 375 0 3417 209 1 33 chr1 35281824 35282485 -207381868 + MER82 DNA MER2_type 14 653 0 211 286 0 0 chr1 35283326 35283396 -207380957 + (TAA)n Simple_repeat Simple_repeat 2 71 0 802 204 63 11 chr1 35283611 35283802 -207380551 - MLT1A1 LTR MaLR 0 365 165 27 0 0 0 chr1 35283864 35283891 -207380462 + AT_rich Low_complexity Low_complexity 1 27 0 1442 106 0 19 chr1 35283891 35284098 -207380255 - L1PB1 LINE L1 -1 6150 5948 3439 193 33 68 chr1 35284098 35285077 -207379276 - MER97c DNA MER1_type? -28 1062 119 741 150 6 50 chr1 35285081 35285241 -207379112 + L1MA8 LINE L1 5970 6122 -169 1556 27 6 6 chr1 35285243 35285426 -207378927 + AluY SINE Alu 1 183 -128 291 193 136 11 chr1 35285506 35285594 -207378759 - MER97c DNA MER1_type? -991 99 1 1673 167 0 43 chr1 35285817 35286122 -207378231 - AluJo SINE Alu -20 292 1 248 276 9 19 chr1 35286148 35286253 -207378100 + CT-rich Low_complexity Low_complexity 2 105 0 204 167 0 0 chr1 35286265 35286313 -207378040 + (TCTCTG)n Simple_repeat Simple_repeat 4 51 0 404 213 234 0 chr1 35287339 35287480 -207376873 + L2 LINE L2 2856 3029 -284 42241 36 26 2 chr1 35287506 35292609 -207371744 + L1P LINE L1 1 5227 -919 4646 132 13 0 chr1 35292753 35293430 -207370923 + L1PA15 LINE L1 5480 6165 0 696 270 95 11 chr1 35293447 35293721 -207370632 - L1MC4 LINE L1 -27 8015 7719 2474 133 18 10 chr1 35293735 35294127 -207370226 - L1PA13 LINE L1 0 6163 5769 * 7751 55 0 7 chr1 35294119 35295435 -207368918 - L1PA8 LINE L1 -3 6169 4855 5699 183 54 8 chr1 35295535 35297280 -207367073 - L1MC2 LINE L1 -3 6341 4514 3352 177 18 66 chr1 35297281 35298067 -207366286 - L1MB8 LINE L1 -1 6988 6241 7965 227 38 16 chr1 35298077 35300200 -207364153 - L1MB8 LINE L1 -1592 5365 3196 1795 258 53 25 chr1 35300207 35300730 -207363623 - L1MB8 LINE L1 -6311 548 11 484 251 231 0 chr1 35301705 35301900 -207362453 - MIR SINE MIR -10 252 13 186 234 85 53 chr1 35301928 35302022 -207362331 + MIR SINE MIR 120 216 -46 237 208 56 14 chr1 35302162 35302234 -207362119 + L1MC4 LINE L1 7965 8039 -3 244 145 79 0 chr1 35302681 35302757 -207361596 + (TA)n Simple_repeat Simple_repeat 2 83 0 33 25 0 0 chr1 35303073 35303113 -207361240 + AT_rich Low_complexity Low_complexity 1 40 0 2257 107 0 3 chr1 35303852 35304150 -207360203 + AluSg SINE Alu 1 297 -13 1780 187 200 47 chr1 35304327 35304797 -207359556 - MLT1F LTR MaLR 0 542 1 317 238 0 0 chr1 35304940 35305003 -207359350 + MER91A DNA MER1_type 1 63 -77 2479 146 21 5 chr1 35305522 35305906 -207358447 + MLT1B LTR MaLR 1 390 0 2197 62 0 45 chr1 35306072 35306363 -207357990 + AluY SINE Alu 1 278 -33 2518 90 0 0 chr1 35306470 35306813 -207357540 - L1P LINE L1 -1333 4813 4471 12490 186 24 17 chr1 35306815 35309686 -207354667 - L1P4 LINE L1 -383 6436 3588 2200 104 10 0 chr1 35309686 35309975 -207354378 - AluSp SINE Alu -21 292 1 12490 186 24 17 chr1 35309975 35313396 -207350957 - L1P4 LINE L1 -3231 3588 4 1006 241 96 30 chr1 35313411 35313818 -207350535 - HAL1 LINE L1 -27 2480 2047 2686 246 184 26 chr1 35314011 35315255 -207349098 - HAL1 LINE L1 -396 2111 672 555 179 55 21 chr1 35316150 35316295 -207348058 + MER117 DNA MER1_type 1 150 -47 425 308 35 14 chr1 35316347 35316490 -207347863 - MER5A DNA MER1_type 0 189 44 541 298 34 21 chr1 35317238 35317290 -207347063 - MIR SINE MIR -4 258 208 1705 169 140 29 chr1 35317290 35317675 -207346678 - MSTC LTR MaLR 0 428 1 541 298 34 21 chr1 35317675 35317815 -207346538 - MIR SINE MIR -54 208 60 1664 262 125 21 chr1 35317815 35318350 -207346003 - MLT1E LTR MaLR -2 591 1 541 298 34 21 chr1 35318350 35318394 -207345959 - MIR SINE MIR -202 60 18 1024 321 27 25 chr1 35318895 35319311 -207345042 - L2 LINE L2 -407 2907 2488 4425 132 13 2 chr1 35319311 35319938 -207344415 + MER41B LTR ERV1 2 635 0 1024 321 27 25 chr1 35319938 35320076 -207344277 - L2 LINE L2 -826 2488 2352 979 298 109 20 chr1 35320181 35320630 -207343723 - L2 LINE L2 0 3313 2825 2873 151 4 26 chr1 35320634 35320740 -207343613 + L1MA8 LINE L1 5371 5478 -813 2276 108 16 0 chr1 35320740 35321047 -207343306 - AluSq SINE Alu 0 313 2 2873 151 4 26 chr1 35321047 35321444 -207342909 + L1MA8 LINE L1 5478 5863 -428 234 0 0 0 chr1 35321545 35321571 -207342782 + (A)n Simple_repeat Simple_repeat 1 26 0 500 340 20 0 chr1 35321572 35321725 -207342628 - MER91A DNA MER1_type -40 156 1 1246 254 83 38 chr1 35322417 35322814 -207341539 + LTR16C LTR ERVL 71 485 -6 1423 79 138 5 chr1 35323114 35323317 -207341036 - MER30 DNA MER1_type 0 230 1 1455 189 139 16 chr1 35323443 35323760 -207340593 + L1MD3 LINE L1 6654 7009 -986 226 155 69 69 chr1 35323788 35323846 -207340507 - MIR SINE MIR -87 175 118 394 326 94 33 chr1 35324958 35325351 -207339002 + L2 LINE L2 2441 2857 -457 569 257 171 2 chr1 35325596 35325802 -207338551 - MIR SINE MIR -36 226 4 1004 197 22 0 chr1 35325944 35326122 -207338231 + MER58A DNA MER1_type 43 224 0 1717 157 18 14 chr1 35326646 35326971 -207337382 + AluSx SINE Alu 1 326 0 225 289 0 0 chr1 35327522 35327574 -207336779 - MLT1K LTR MaLR -8 580 529 475 347 50 13 chr1 35328403 35328642 -207335711 + L3 LINE CR1 987 1234 -343 209 32 0 32 chr1 35329157 35329188 -207335165 + (TTA)n Simple_repeat Simple_repeat 3 32 0 192 250 0 0 chr1 35329194 35329234 -207335119 - L2 LINE L2 -31 3241 3202 792 285 113 43 chr1 35329299 35330155 -207334198 - L2 LINE L2 -52 3261 2353 261 259 167 0 chr1 35330450 35330558 -207333795 - L2 LINE L2 -9 3304 3179 455 303 35 0 chr1 35331904 35332046 -207332307 + MIR SINE MIR 109 255 -7 289 282 16 117 chr1 35332486 35332674 -207331679 - MIR SINE MIR -74 188 20 338 225 11 22 chr1 35332848 35332937 -207331416 - L3 LINE CR1 -75 1502 1415 921 223 22 0 chr1 35332949 35333133 -207331220 + MER5A DNA MER1_type 2 189 0 187 296 0 0 chr1 35333179 35333223 -207331130 + MIR SINE MIR 59 102 -160 209 145 81 113 chr1 35333239 35333266 -207331087 - MIR SINE MIR 0 262 236 2079 177 135 16 chr1 35333266 35333717 -207330636 + MLT1D LTR MaLR 1 505 0 209 145 81 113 chr1 35333717 35333751 -207330602 - MIR SINE MIR -26 236 203 639 214 2 0 chr1 35333787 35333924 -207330429 - MIR SINE MIR -61 147 63 189 74 0 0 chr1 35334637 35334664 -207329689 + (TG)n Simple_repeat Simple_repeat 1 27 0 441 271 85 0 chr1 35335673 35335791 -207328562 - MIR SINE MIR -73 189 62 183 226 0 38 chr1 35336114 35336167 -207328186 + MIR SINE MIR 56 106 -102 737 304 100 40 chr1 35336191 35336642 -207327711 + MLT1K LTR MaLR 4 481 -107 601 212 153 6 chr1 35336879 35337050 -207327303 - L1MB8 LINE L1 -1 6177 5978 22 35 0 0 chr1 35337071 35337100 -207327253 + AT_rich Low_complexity Low_complexity 1 29 0 2913 82 2 17 chr1 35337105 35337507 -207326846 - L1PA8A LINE L1 -27 6104 5709 2505 209 32 47 chr1 35337507 35337632 -207326721 - L1ME1 LINE L1 -196 6039 5914 3039 87 5 0 chr1 35337632 35338033 -207326320 + L1PA13 LINE L1 5757 6159 -4 2505 209 32 47 chr1 35338033 35338566 -207325787 - L1ME1 LINE L1 -321 5914 5391 293 194 30 0 chr1 35338564 35338631 -207325722 + L1M4 LINE L1 4934 5002 -1144 * 2155 237 52 10 chr1 35338629 35338660 -207325693 - L1ME1 LINE L1 -1206 5009 4981 500 0 0 16 chr1 35338660 35338721 -207325632 + (TTA)n Simple_repeat Simple_repeat 1 60 0 2155 237 52 10 chr1 35338721 35339309 -207325044 - L1ME1 LINE L1 -1234 4981 4356 2204 186 45 21 chr1 35339309 35339729 -207324624 + MSTB1 LTR MaLR 3 432 0 2155 237 52 10 chr1 35339729 35339799 -207324554 - L1ME1 LINE L1 -1859 4356 4290 1481 173 4 11 chr1 35339814 35340086 -207324267 - L1P LINE L1 -1344 4802 4533 4662 259 77 36 chr1 35340086 35340596 -207323757 - L1ME1 LINE L1 -2562 3653 3165 2494 83 0 3 chr1 35340596 35340908 -207323445 - AluY SINE Alu 0 311 1 4662 259 77 36 chr1 35340908 35341268 -207323085 - L1ME1 LINE L1 -3050 3165 2821 2302 62 0 0 chr1 35341268 35341540 -207322813 + L1PA4 LINE L1 5884 6155 0 4662 259 77 36 chr1 35341540 35344176 -207320177 - L1ME1 LINE L1 -3394 2821 34 349 290 99 30 chr1 35344184 35344358 -207319995 - MLT1J LTR MaLR -268 199 31 2551 189 2 21 chr1 35344476 35344910 -207319443 - MSTB LTR MaLR 0 426 1 339 270 0 30 chr1 35345237 35345337 -207319016 + L2 LINE L2 3214 3310 -3 2131 284 123 14 chr1 35345557 35346403 -207317950 + L2 LINE L2 1706 2643 -671 1904 151 33 101 chr1 35346417 35346450 -207317903 - L1MA7 LINE L1 -4 6287 6253 1417 199 115 13 chr1 35346450 35346762 -207317591 - MER2 DNA MER2_type 0 344 1 1904 151 33 101 chr1 35346762 35346905 -207317448 - L1MA7 LINE L1 -38 6253 6102 2717 10 0 10 chr1 35346905 35347207 -207317146 - AluYa5 SINE Alu -12 299 1 1904 151 33 101 chr1 35347207 35347513 -207316840 - L1MA7 LINE L1 -189 6102 5837 484 103 0 0 chr1 35347508 35347576 -207316777 + L1MA7 LINE L1 5790 5857 -434 * 890 316 79 22 chr1 35347586 35348169 -207316184 + L2 LINE L2 2698 3312 -1 342 400 35 0 chr1 35348960 35349160 -207315193 - L3 LINE CR1 -6 1571 1365 4708 148 44 37 chr1 35349160 35350302 -207314051 + L1PB4 LINE L1 4999 6144 -12 268 241 46 37 chr1 35350220 35350307 -207314046 + L1MA4A LINE L1 6189 6279 -24 * 2110 118 3 0 chr1 35350307 35350594 -207313759 - AluSq SINE Alu -24 289 2 268 241 46 37 chr1 35350594 35350614 -207313739 + L1MA4A LINE L1 6279 6297 -6 300 330 62 46 chr1 35350618 35350725 -207313628 - L3 LINE CR1 -202 1375 1262 1815 186 33 53 chr1 35350725 35351123 -207313230 + MLT1B LTR MaLR 1 390 0 300 330 62 46 chr1 35351123 35351209 -207313144 - L3 LINE CR1 -315 1262 1179 230 250 61 106 chr1 35351239 35351371 -207312982 - L3 LINE CR1 -470 1107 982 190 343 0 0 chr1 35351701 35351768 -207312585 - L3 LINE CR1 -1174 403 337 189 324 56 0 chr1 35351823 35351894 -207312459 + MIR3 SINE MIR 98 172 -36 576 40 0 0 chr1 35351913 35351988 -207312365 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 266 370 35 23 chr1 35352089 35352262 -207312091 - L3 LINE CR1 -1340 237 63 264 250 58 29 chr1 35352313 35352417 -207311936 - L3 LINE CR1 -827 750 644 755 216 0 34 chr1 35352938 35353086 -207311267 - MER5A DNA MER1_type -46 143 1 248 250 18 0 chr1 35353419 35353475 -207310878 + L3b LINE CR1 1350 1406 -177 321 312 145 0 chr1 35353626 35353764 -207310589 + MIR SINE MIR 98 255 -7 714 186 45 62 chr1 35354385 35354562 -207309791 + MER5B DNA MER1_type 5 178 0 323 396 50 8 chr1 35354956 35355216 -207309137 + L1ME3A LINE L1 5619 5889 -281 582 245 184 22 chr1 35356863 35357141 -207307212 - MLT1K LTR MaLR -58 530 208 415 273 43 56 chr1 35357384 35357545 -207306808 + MER5A DNA MER1_type 30 188 -1 2156 111 0 3 chr1 35357882 35358179 -207306174 - AluSg SINE Alu -14 296 1 565 307 35 13 chr1 35358428 35358659 -207305694 + MIR SINE MIR 17 252 -10 214 327 18 62 chr1 35359696 35359809 -207304544 - L2 LINE L2 -49 3223 3116 2052 170 20 12 chr1 35359962 35360303 -207304050 - MER2 DNA MER2_type 0 344 1 189 200 0 36 chr1 35360539 35360594 -207303759 + L2 LINE L2 3261 3313 0 767 270 59 31 chr1 35360946 35361168 -207303185 + MIR SINE MIR 11 238 -24 186 241 0 74 chr1 35361135 35361189 -207303164 + L2 LINE L2 3251 3300 -13 * 1868 214 45 24 chr1 35361336 35361761 -207302592 - MER63B DNA MER1_type -1 435 2 304 336 67 0 chr1 35361928 35362047 -207302306 - L3 LINE CR1 -1092 485 359 16901 143 18 10 chr1 35362059 35363315 -207301038 - L1PA11 LINE L1 0 6174 4929 2342 103 0 3 chr1 35363315 35363626 -207300727 + AluY SINE Alu 1 310 -1 16901 143 18 10 chr1 35363626 35365902 -207298451 - L1PA11 LINE L1 -1245 4929 2605 287 292 54 65 chr1 35365989 35366157 -207298196 - L2 LINE L2 -3 3310 3145 261 349 43 59 chr1 35366271 35366296 -207298057 - L2 LINE L2 -212 3060 3036 1166 309 94 29 chr1 35366296 35366817 -207297536 - LTR67 LTR ERVL 0 557 3 261 349 43 59 chr1 35366817 35366992 -207297361 - L2 LINE L2 -236 3036 2870 321 89 0 0 chr1 35366992 35367037 -207297316 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 349 43 59 chr1 35367037 35367190 -207297163 - L2 LINE L2 -402 2870 2716 435 239 0 94 chr1 35367357 35367516 -207296837 - L1MEc LINE L1 -4740 2085 1942 423 0 0 0 chr1 35367521 35367568 -207296785 + (TG)n Simple_repeat Simple_repeat 2 48 0 413 301 54 42 chr1 35367599 35368007 -207296346 - L1MEc LINE L1 -4842 1700 1288 264 156 0 0 chr1 35368018 35368063 -207296290 + AluJ SINE Alu 85 129 -173 1011 155 0 6 chr1 35368090 35368251 -207296102 + AluJ SINE Alu 127 286 -26 764 206 14 7 chr1 35368997 35369143 -207295210 - FRAM SINE Alu -30 146 1 285 295 170 9 chr1 35369837 35369949 -207294404 + MIR SINE MIR 3 132 -130 268 234 158 70 chr1 35370098 35370256 -207294097 + L2 LINE L2 3115 3286 -27 235 239 56 56 chr1 35370267 35370338 -207294015 + MIR SINE MIR 126 196 -66 591 287 104 42 chr1 35370346 35370701 -207293652 - LTR16C LTR ERVL 0 491 115 844 11 0 0 chr1 35371075 35371168 -207293185 - L1PA4 LINE L1 -2 6153 6061 309 51 0 0 chr1 35371658 35371697 -207292656 + (GA)n Simple_repeat Simple_repeat 1 39 0 225 362 6 17 chr1 35371927 35372101 -207292252 + CT-rich Low_complexity Low_complexity 1 172 0 180 0 0 0 chr1 35372106 35372126 -207292227 + (CA)n Simple_repeat Simple_repeat 1 20 0 350 299 84 12 chr1 35372592 35372759 -207291594 + MIR SINE MIR 44 222 -40 298 235 118 0 chr1 35372955 35373040 -207291313 - MIR SINE MIR -86 176 82 23 0 0 0 chr1 35373040 35373063 -207291290 + AT_rich Low_complexity Low_complexity 1 23 0 254 281 125 0 chr1 35373063 35373159 -207291194 - MIR SINE MIR -17 245 138 21 0 0 0 chr1 35373159 35373180 -207291173 + AT_rich Low_complexity Low_complexity 1 21 0 2762 157 8 19 chr1 35373180 35373652 -207290701 - L1PA16 LINE L1 -1 6165 5699 1915 183 42 13 chr1 35373652 35374034 -207290319 + L1 LINE L1 4446 4838 -1308 337 245 75 47 chr1 35374043 35374149 -207290204 - MIR SINE MIR -60 148 40 464 303 16 31 chr1 35374407 35374721 -207289632 + CT-rich Low_complexity Low_complexity 1 309 0 413 220 39 167 chr1 35375763 35376099 -207288254 - MLT1I LTR MaLR -47 362 70 567 309 111 5 chr1 35376256 35376463 -207287890 + MIR SINE MIR 32 260 -2 830 246 30 71 chr1 35376594 35376862 -207287491 - MIR SINE MIR 0 262 6 1990 146 20 0 chr1 35377677 35377972 -207286381 - AluSx SINE Alu -11 301 1 728 301 127 24 chr1 35379145 35379563 -207284790 + L1ME4a LINE L1 5427 5887 -234 241 311 14 0 chr1 35379776 35379850 -207284503 - L2 LINE L2 -219 3053 2979 386 165 13 0 chr1 35380384 35380463 -207283890 + GA-rich Low_complexity Low_complexity 2 81 0 763 211 15 15 chr1 35380683 35380816 -207283537 - FLAM_C SINE Alu 0 133 1 245 338 58 29 chr1 35382324 35382463 -207281890 + L3 LINE CR1 953 1095 -482 567 290 117 9 chr1 35382537 35382751 -207281602 + MIR SINE MIR 24 260 -2 264 319 101 22 chr1 35382756 35382894 -207281459 + L3 LINE CR1 1146 1294 -283 3839 193 49 53 chr1 35382896 35383961 -207280392 - MER97c DNA MER1_type? -3 1087 27 421 259 12 40 chr1 35384005 35384175 -207280178 + L3 LINE CR1 1346 1576 -1 2664 223 81 38 chr1 35385207 35386177 -207278176 + Charlie7 DNA MER1_type 1596 2607 -5 333 257 22 59 chr1 35386386 35386522 -207277831 + L2 LINE L2 2960 3090 -182 798 293 72 7 chr1 35386779 35387069 -207277284 + MER102b DNA MER1_type 33 341 0 461 335 56 38 chr1 35387508 35387848 -207276505 - LTR16C LTR ERVL 0 491 146 509 344 45 11 chr1 35387986 35388392 -207275961 - ERVL LTR ERVL -3021 2743 2294 781 350 61 50 chr1 35388543 35388858 -207275495 - ERVL LTR ERVL -3834 1162 852 2285 102 0 6 chr1 35388858 35389173 -207275180 - AluSq SINE Alu 0 313 1 781 350 61 50 chr1 35389173 35390007 -207274346 - ERVL LTR ERVL -4144 852 1 474 342 66 25 chr1 35390009 35390328 -207274025 - LTR16C LTR ERVL -2 489 158 388 104 13 13 chr1 35390698 35390775 -207273578 + (TG)n Simple_repeat Simple_repeat 1 77 0 264 354 12 0 chr1 35391340 35391422 -207272931 + MIR3 SINE MIR 78 160 -48 484 311 74 33 chr1 35391495 35391739 -207272614 - MIR SINE MIR -7 255 2 190 318 79 0 chr1 35391934 35391997 -207272356 + MIR SINE MIR 178 245 -17 279 235 150 103 chr1 35392022 35392256 -207272097 + MLT1K LTR MaLR 19 263 -325 415 345 0 7 chr1 35394066 35394205 -207270148 + MIR SINE MIR 8 145 -117 655 227 76 54 chr1 35394231 35394463 -207269890 + MIR SINE MIR 2 241 -21 207 341 24 0 chr1 35394779 35394861 -207269492 + L2 LINE L2 3106 3189 -83 * 238 286 9 30 chr1 35394857 35394974 -207269379 + MIR SINE MIR 8 117 -120 303 109 164 0 chr1 35395025 35395080 -207269273 - MER5A DNA MER1_type -77 112 49 446 244 150 0 chr1 35395175 35395302 -207269051 + MIR SINE MIR 109 254 -8 386 281 45 0 chr1 35395326 35395415 -207268938 + L2 LINE L2 3180 3272 0 293 344 39 16 chr1 35396158 35396286 -207268067 + L2 LINE L2 3138 3268 -4 342 232 73 12 chr1 35396468 35396550 -207267803 - MIR SINE MIR -113 149 63 2012 99 3 11 chr1 35396919 35397224 -207267129 - AluSp SINE Alu 0 303 1 503 240 27 20 chr1 35397225 35397371 -207266982 - MER103 DNA DNA -12 154 8 183 42 0 0 chr1 35397379 35397403 -207266950 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 291 233 86 60 chr1 35398179 35398295 -207266058 - MLT1H LTR MaLR -16 526 408 304 302 9 28 chr1 35398378 35398484 -207265869 - MLT1H LTR MaLR -341 208 105 574 181 76 82 chr1 35399932 35400103 -207264250 + MIR SINE MIR 29 198 -64 1639 231 87 102 chr1 35400105 35400655 -207263698 + MLT1E LTR MaLR 1 593 0 417 287 63 35 chr1 35400718 35400861 -207263492 - MIR SINE MIR -105 157 11 1398 177 127 36 chr1 35401169 35401531 -207262822 + MSTD LTR MaLR 1 395 -1 572 241 25 43 chr1 35402635 35402797 -207261556 - MER5B DNA MER1_type -1 177 19 1171 144 16 21 chr1 35403463 35403650 -207260703 - MER5A DNA MER1_type -3 186 1 189 107 0 0 chr1 35403677 35403705 -207260648 + (TG)n Simple_repeat Simple_repeat 2 29 0 644 306 45 54 chr1 35403758 35404000 -207260353 - MIR SINE MIR -1 261 22 428 326 0 0 chr1 35404028 35404157 -207260196 - L2 LINE L2 -9 3304 3176 231 266 62 0 chr1 35404836 35404900 -207259453 + L2 LINE L2 3205 3272 0 1754 120 76 7 chr1 35405301 35405577 -207258776 - AluSx SINE Alu -17 295 1 698 248 7 0 chr1 35406249 35406398 -207257955 + MIR SINE MIR 32 181 -81 238 264 0 0 chr1 35406471 35406524 -207257829 - L2 LINE L2 0 3313 3261 231 341 102 12 chr1 35407669 35407836 -207256517 - L2 LINE L2 -1514 1800 1619 291 140 0 0 chr1 35407836 35407886 -207256467 + (TG)n Simple_repeat Simple_repeat 1 50 0 196 53 53 0 chr1 35407986 35408024 -207256329 + (TTTAA)n Simple_repeat Simple_repeat 2 41 0 2033 111 0 3 chr1 35408024 35408312 -207256041 - AluSg SINE Alu -23 287 1 539 308 81 15 chr1 35408312 35408510 -207255843 - MIR SINE MIR -3 259 49 619 257 168 13 chr1 35408563 35408789 -207255564 - MIR SINE MIR 0 262 2 782 274 31 31 chr1 35410407 35410461 -207253892 - MIR SINE MIR 0 262 209 2095 176 113 22 chr1 35410461 35410920 -207253433 + MLT1D LTR MaLR 1 501 -4 782 274 31 31 chr1 35410920 35411124 -207253229 - MIR SINE MIR -52 210 4 1022 187 16 0 chr1 35412098 35412280 -207252073 + MER5A DNA MER1_type 1 185 -4 352 310 90 14 chr1 35413446 35413591 -207250762 - MIR SINE MIR -70 192 37 245 236 194 79 chr1 35413832 35413997 -207250356 - HAL1 LINE L1 -23 2484 2301 1152 256 113 53 chr1 35414108 35414752 -207249601 - HAL1 LINE L1 -423 2084 1402 747 279 50 76 chr1 35414779 35415486 -207248867 - HAL1 LINE L1 -1193 1314 627 1373 114 5 0 chr1 35415710 35415911 -207248442 - AluSg/x SINE Alu -16 296 95 321 260 31 31 chr1 35415914 35416010 -207248343 - HAL1 LINE L1 -1968 539 444 347 330 52 12 chr1 35416024 35416197 -207248156 - MLT1L LTR MaLR -18 597 418 563 274 157 0 chr1 35416272 35416425 -207247928 + MER5A DNA MER1_type 13 189 0 339 235 29 103 chr1 35416574 35416710 -207247643 - MLT1L LTR MaLR -456 159 34 310 290 109 49 chr1 35416941 35417124 -207247229 - HAL1 LINE L1 -2311 196 3 288 53 0 0 chr1 35417208 35417246 -207247107 + (TG)n Simple_repeat Simple_repeat 2 39 0 202 180 40 0 chr1 35417254 35417304 -207247049 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 312 215 77 54 chr1 35418582 35418712 -207245641 + L1ME4a LINE L1 5980 6112 -9 1233 110 34 64 chr1 35419261 35419497 -207244856 + AluSg/x SINE Alu 84 312 0 534 231 68 0 chr1 35420522 35420639 -207243714 - MIR SINE MIR -17 245 121 1083 251 149 17 chr1 35420819 35421229 -207243124 + LTR16C LTR ERVL 2 465 -26 181 259 17 52 chr1 35421716 35421774 -207242579 + MIR SINE MIR 91 146 -116 369 248 50 37 chr1 35422628 35422789 -207241564 + LTR33 LTR ERVL 109 271 -250 302 192 0 55 chr1 35423223 35423296 -207241057 + AluSc SINE Alu 94 162 -137 263 186 0 0 chr1 35423295 35423338 -207241015 + LTR33 LTR ERVL 479 521 0 * 258 136 0 0 chr1 35423755 35423799 -207240554 + (T)n Simple_repeat Simple_repeat 1 44 0 1445 166 46 33 chr1 35424741 35424863 -207239490 + AluJo SINE Alu 1 120 -192 288 77 0 0 chr1 35424863 35424902 -207239451 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1445 166 46 33 chr1 35424902 35425086 -207239267 + AluJo SINE Alu 120 311 -1 539 198 58 25 chr1 35425356 35425477 -207238876 - L2 LINE L2 -1 3312 3188 315 148 99 25 chr1 35425494 35425575 -207238778 - MIR SINE MIR -74 188 102 419 262 137 11 chr1 35425847 35426030 -207238323 + MIR SINE MIR 51 256 -6 1127 279 97 11 chr1 35429824 35430269 -207234084 - MLT1G1 LTR MaLR -38 557 75 236 305 49 0 chr1 35430754 35430836 -207233517 + MLT1K LTR MaLR 494 579 -9 185 257 0 0 chr1 35430896 35430931 -207233422 - L2 LINE L2 -27 3286 3252 958 145 0 25 chr1 35430940 35431099 -207233254 - AluSg/x SINE Alu -11 299 145 360 193 45 26 chr1 35431128 35431236 -207233117 - MIR SINE MIR -63 145 84 209 231 0 0 chr1 35431992 35432031 -207232322 - L2 LINE L2 -7 3265 3227 853 230 144 78 chr1 35433061 35433495 -207230858 - MLT1B LTR MaLR -5 451 1 3285 109 124 0 chr1 35433934 35434456 -207229897 + LTR49 LTR ERV1 9 595 0 256 280 152 66 chr1 35435295 35435324 -207229029 - L2 LINE L2 -161 3111 3086 1924 199 60 18 chr1 35435324 35435772 -207228581 - MLT1C LTR MaLR 0 467 1 256 280 152 66 chr1 35435772 35435985 -207228368 - L2 LINE L2 -186 3086 2848 582 332 34 14 chr1 35436012 35436307 -207228046 - L2 LINE L2 -527 2787 2487 695 216 56 94 chr1 35437129 35437342 -207227011 - MIR SINE MIR -35 227 23 308 259 143 70 chr1 35439167 35439468 -207224885 - MLT1H LTR MaLR -16 533 211 417 39 0 0 chr1 35439985 35440036 -207224317 + (TG)n Simple_repeat Simple_repeat 2 52 0 670 273 76 32 chr1 35440677 35440751 -207223602 - MLT1I LTR MaLR -6 403 334 2537 71 0 0 chr1 35440751 35441060 -207223293 + AluY SINE Alu 3 311 0 670 273 76 32 chr1 35441060 35441338 -207223015 - MLT1I LTR MaLR -75 334 1 1620 189 22 26 chr1 35442974 35443287 -207221066 + AluJo SINE Alu 1 312 0 331 235 194 10 chr1 35443334 35443432 -207220921 + MIR SINE MIR 47 162 -100 273 257 79 10 chr1 35443450 35443551 -207220802 - L2 LINE L2 -631 2683 2576 1295 204 56 58 chr1 35443551 35443944 -207220409 - MLT2C1 LTR ERVL 0 397 6 283 220 30 50 chr1 35444190 35444290 -207220063 + MIR SINE MIR 113 210 -52 216 326 11 21 chr1 35444554 35444649 -207219704 + L2 LINE L2 2983 3076 -196 592 294 98 25 chr1 35444963 35445198 -207219155 - MIR SINE MIR -6 256 5 300 27 0 0 chr1 35445260 35445297 -207219056 + (CA)n Simple_repeat Simple_repeat 2 38 0 194 365 52 0 chr1 35445597 35445693 -207218660 + L2 LINE L2 3123 3223 -49 277 298 19 29 chr1 35446085 35446189 -207218164 + GA-rich Low_complexity Low_complexity 4 106 0 2274 90 3 0 chr1 35446701 35446989 -207217364 + AluSc SINE Alu 1 289 -20 695 268 16 0 chr1 35447062 35447245 -207217108 - Charlie1 DNA MER1_type -2519 242 57 389 323 36 15 chr1 35449604 35449799 -207214554 + MLT1K LTR MaLR 24 222 -366 1556 204 103 11 chr1 35449802 35450160 -207214193 + MSTD LTR MaLR 3 393 -3 6431 206 44 109 chr1 35450164 35450939 -207213414 + MSTD-int LTR MaLR 2 826 -909 892 174 32 0 chr1 35450939 35451094 -207213259 + Tigger3(Golem) DNA MER2_type 2879 3038 0 6431 206 44 109 chr1 35451094 35452020 -207212333 + MSTD-int LTR MaLR 826 1735 0 1864 177 102 8 chr1 35452020 35452382 -207211971 + MSTD LTR MaLR 1 396 0 327 246 46 97 chr1 35452657 35452712 -207211641 + MLT1K LTR MaLR 421 477 -111 1397 146 4 49 chr1 35452712 35452938 -207211415 + MER20 DNA MER1_type 4 219 0 327 246 46 97 chr1 35452938 35453057 -207211296 + MLT1K LTR MaLR 477 586 -2 2270 140 137 9 chr1 35453984 35454421 -207209932 + MLT1D LTR MaLR 6 498 -7 1689 139 130 50 chr1 35454516 35454822 -207209531 - MLT1A1 LTR MaLR 0 365 28 270 0 0 0 chr1 35454822 35454852 -207209501 + (TA)n Simple_repeat Simple_repeat 2 31 0 1689 139 130 50 chr1 35454852 35454883 -207209470 - MLT1A1 LTR MaLR -337 28 1 279 226 48 24 chr1 35455061 35455145 -207209208 - MIR SINE MIR -32 230 145 305 333 49 16 chr1 35455231 35455354 -207208999 - MIR SINE MIR -113 149 23 330 276 0 0 chr1 35455964 35456040 -207208313 + MLT1J LTR MaLR 124 199 -312 404 240 53 47 chr1 35456106 35456256 -207208097 + MLT1J2 LTR MaLR 297 447 -3 224 281 122 0 chr1 35457393 35457475 -207206878 + MIR SINE MIR 139 230 -32 792 210 38 21 chr1 35457484 35457670 -207206683 + MIR SINE MIR 15 203 -59 380 297 112 51 chr1 35457763 35458059 -207206294 - L1M4 LINE L1 -1990 4156 3843 1882 159 188 55 chr1 35458150 35458229 -207206124 - MLT2B1 LTR ERVL -8 512 445 1483 24 0 0 chr1 35458229 35458394 -207205959 - L1PA5 LINE L1 -8 6146 5982 1882 159 188 55 chr1 35458394 35458766 -207205587 - MLT2B1 LTR ERVL -75 445 1 259 326 36 25 chr1 35459305 35459501 -207204852 - L1M4 LINE L1 -2314 3832 3635 26 0 0 0 chr1 35459740 35459766 -207204587 + AT_rich Low_complexity Low_complexity 1 26 0 2631 52 0 0 chr1 35460050 35460359 -207203994 + AluY SINE Alu 1 309 -2 22 0 0 0 chr1 35460359 35460381 -207203972 + AT_rich Low_complexity Low_complexity 1 22 0 772 280 123 25 chr1 35461576 35462123 -207202230 - L2 LINE L2 0 3313 2690 11392 204 58 22 chr1 35462127 35465936 -207198417 + L1ME4a LINE L1 18 3966 -2574 423 70 43 35 chr1 35465972 35466087 -207198266 + (TTATA)n Simple_repeat Simple_repeat 1 116 0 798 208 29 34 chr1 35466114 35466239 -207198114 + L1ME4a LINE L1 3960 4085 -2455 787 240 182 23 chr1 35466239 35466497 -207197856 + AluY SINE Alu 2 300 -1 798 208 29 34 chr1 35466497 35466578 -207197775 + L1ME4a LINE L1 4085 4165 -2375 * 7192 244 33 21 chr1 35466576 35468112 -207196241 - L1MEc LINE L1 -1671 4544 2973 1737 183 24 3 chr1 35468112 35468407 -207195946 - AluJb SINE Alu -10 302 2 7192 244 33 21 chr1 35468407 35469048 -207195305 - L1MEc LINE L1 -3242 2973 2341 4353 201 31 44 chr1 35469043 35470066 -207194287 - L1MCb LINE L1 -4856 1189 649 * 2310 39 78 0 chr1 35470066 35470350 -207194003 - AluY SINE Alu -4 307 2 4353 201 31 44 chr1 35470350 35470988 -207193365 - L1MCb LINE L1 -5396 649 4 2829 186 92 38 chr1 35471007 35471977 -207192376 - L1MEc LINE L1 -3859 2356 1365 515 216 92 123 chr1 35472160 35472703 -207191650 - L1ME4a LINE L1 -210 5911 5386 329 318 9 27 chr1 35472730 35472840 -207191513 - MLT1K LTR MaLR -430 158 51 2129 118 0 37 chr1 35472895 35473218 -207191135 + AluSx SINE Alu 1 311 -1 612 293 234 13 chr1 35474348 35474724 -207189629 - L2 LINE L2 -10 3303 2845 500 282 35 12 chr1 35475880 35476050 -207188303 + MIR3 SINE MIR 14 187 -21 704 301 94 35 chr1 35476752 35477094 -207187259 - L2 LINE L2 0 3313 2952 453 285 93 31 chr1 35477880 35478073 -207186280 + MIR SINE MIR 48 252 -10 382 322 91 31 chr1 35478388 35478807 -207185546 + HAL1b LINE L1 249 692 -656 264 290 113 45 chr1 35479313 35479975 -207184378 + L1ME4a LINE L1 4835 5541 -999 336 335 28 28 chr1 35480096 35480275 -207184078 + L1ME4a LINE L1 5649 5827 -2375 381 302 16 0 chr1 35480351 35480480 -207183873 + L1ME4a LINE L1 5980 6110 -405 580 231 15 0 chr1 35480521 35480651 -207183702 - MIR SINE MIR -13 249 118 269 237 93 121 chr1 35480655 35481052 -207183301 + L1ME4a LINE L1 6128 6513 -2 527 216 105 96 chr1 35481834 35482158 -207182195 - L2 LINE L2 0 3313 2987 820 0 20 0 chr1 35482909 35483009 -207181344 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 2056 120 0 0 chr1 35483010 35483293 -207181060 - AluSx SINE Alu -29 283 1 903 258 65 8 chr1 35483949 35484197 -207180156 + MIR SINE MIR 1 262 0 362 280 53 45 chr1 35485848 35485945 -207178408 + L2 LINE L2 3180 3280 -33 1714 152 115 93 chr1 35485945 35486439 -207177914 + MLT1D LTR MaLR 1 505 0 362 280 53 45 chr1 35486439 35486473 -207177880 + L2 LINE L2 3280 3312 -1 436 268 58 89 chr1 35486866 35487157 -207177196 - L1MC4a LINE L1 -106 6015 5732 1037 267 44 56 chr1 35488946 35489287 -207175066 + MLT1J LTR MaLR 1 337 -174 231 273 26 13 chr1 35490037 35490114 -207174239 + MLT1I LTR MaLR 59 136 -273 267 304 130 45 chr1 35490813 35491060 -207173293 + L2 LINE L2 2687 2954 -360 209 364 14 21 chr1 35491040 35491180 -207173173 + L2 LINE L2 2839 2977 -336 * 715 173 67 17 chr1 35491860 35492039 -207172314 + MER53 DNA DNA 2 189 0 367 177 0 0 chr1 35492139 35492201 -207172152 + MIR SINE MIR 164 225 -37 244 281 45 121 chr1 35492257 35492613 -207171740 + L2 LINE L2 2943 3271 -1 282 376 48 33 chr1 35492769 35492979 -207171374 + MIR SINE MIR 43 255 -7 269 259 53 63 chr1 35494277 35494466 -207169887 + L2 LINE L2 2550 2736 -578 370 271 0 31 chr1 35495174 35495271 -207169082 - MIR3 SINE MIR -39 169 73 683 212 77 97 chr1 35496490 35496749 -207167604 + MIR SINE MIR 4 257 -5 445 293 133 0 chr1 35497090 35497251 -207167102 + MER5A DNA MER1_type 4 188 -1 312 312 22 43 chr1 35497292 35497430 -207166923 + L2 LINE L2 3138 3272 0 400 374 91 33 chr1 35497665 35498026 -207166327 - L3 LINE CR1 -1148 429 48 391 202 98 109 chr1 35498534 35498727 -207165626 + MLT1L LTR MaLR 2 192 -423 584 264 82 34 chr1 35498880 35499088 -207165265 + MLT1L LTR MaLR 382 599 -16 208 167 0 24 chr1 35499213 35499255 -207165098 + (CA)n Simple_repeat Simple_repeat 2 42 0 1215 242 22 72 chr1 35499729 35500175 -207164178 - LTR16A LTR ERVL 0 450 27 254 241 138 0 chr1 35500227 35500314 -207164039 + L2 LINE L2 3170 3268 -4 1420 264 147 39 chr1 35500551 35501578 -207162775 + L1ME4a LINE L1 4986 6121 0 517 60 12 24 chr1 35502271 35502354 -207161999 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 558 213 105 96 chr1 35503105 35503429 -207160924 + L2 LINE L2 2987 3313 0 230 229 93 121 chr1 35504211 35504608 -207159745 - L1ME4a LINE L1 -2 6119 5734 604 231 15 0 chr1 35504612 35504742 -207159611 + MIR SINE MIR 118 249 -13 353 302 16 0 chr1 35504783 35504912 -207159441 - L1ME4a LINE L1 -405 5716 5586 817 317 84 48 chr1 35504913 35505993 -207158360 - L1ME4a LINE L1 -713 5529 4399 356 325 91 31 chr1 35506456 35506875 -207157478 - HAL1b LINE L1 -656 692 249 483 285 93 31 chr1 35507190 35507383 -207156970 - MIR SINE MIR -10 252 48 750 301 94 35 chr1 35508169 35508511 -207155842 + L2 LINE L2 2952 3313 0 515 290 43 11 chr1 35509197 35509383 -207154970 - MIR3 SINE MIR -3 205 14 653 298 234 13 chr1 35510539 35510915 -207153438 + L2 LINE L2 2845 3303 -10 2024 118 0 37 chr1 35512045 35512368 -207151985 - AluSx SINE Alu -1 311 1 338 318 9 27 chr1 35512423 35512533 -207151820 + MLT1K LTR MaLR 51 158 -430 420 216 92 123 chr1 35512560 35513103 -207151250 + L1ME4a LINE L1 5386 5911 -210 1042 152 55 74 chr1 35513281 35513537 -207150816 + L1MCa LINE L1 1371 1621 -4805 1754 127 45 14 chr1 35514230 35514521 -207149832 - AluJb SINE Alu -12 300 1 391 330 51 11 chr1 35515601 35515777 -207148576 - MIR SINE MIR -35 227 45 198 280 0 0 chr1 35515829 35515879 -207148474 + L2 LINE L2 2921 2970 -343 204 216 98 0 chr1 35516085 35516136 -207148217 - MIR SINE MIR -122 140 85 620 204 53 53 chr1 35516203 35516355 -207147998 + MLT1J2 LTR MaLR 3 154 -296 528 286 74 0 chr1 35516400 35516575 -207147778 + MLT1J2 LTR MaLR 229 416 -34 4355 292 128 13 chr1 35517187 35519148 -207145205 - L2 LINE L2 0 3313 1083 604 278 121 5 chr1 35519708 35519906 -207144447 - MIR SINE MIR -38 224 4 631 290 37 22 chr1 35521608 35521877 -207142476 - L1ME4a LINE L1 -165 5956 5684 753 318 15 23 chr1 35521988 35522252 -207142101 - MIR SINE MIR 0 262 1 1021 246 95 35 chr1 35522358 35522793 -207141560 + MLT1H LTR MaLR 20 541 -8 318 50 0 0 chr1 35523454 35523494 -207140859 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 215 231 0 0 chr1 35523535 35523574 -207140779 - L2 LINE L2 -98 3174 3136 1118 99 0 117 chr1 35523672 35523879 -207140474 - AluSg/x SINE Alu 0 330 153 2513 48 0 6 chr1 35523879 35524192 -207140161 - AluY SINE Alu 0 311 1 1118 99 0 117 chr1 35524192 35524245 -207140108 - AluSg/x SINE Alu -177 153 95 553 319 48 37 chr1 35524971 35525266 -207139087 - L2 LINE L2 -459 2855 2558 * 1021 251 16 16 chr1 35525261 35525508 -207138845 + MIR SINE MIR 12 258 -4 318 262 58 76 chr1 35525830 35526002 -207138351 - MIR SINE MIR -74 188 20 337 320 41 8 chr1 35526311 35526433 -207137920 - MIR SINE MIR -36 226 101 572 289 29 33 chr1 35526698 35526942 -207137411 - MIR SINE MIR 0 262 18 2097 133 0 0 chr1 35527214 35527523 -207136830 + AluSc SINE Alu 1 309 0 610 101 8 17 chr1 35527525 35527644 -207136709 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 271 350 59 25 chr1 35527663 35527782 -207136571 + MIR SINE MIR 42 163 -63 432 213 91 119 chr1 35527782 35528025 -207136328 - MLT1G1 LTR MaLR -2 593 330 532 248 96 44 chr1 35528558 35528828 -207135525 - MLT1G1 LTR MaLR -310 285 2 311 296 12 0 chr1 35528851 35528932 -207135421 + MIR SINE MIR 181 262 0 807 345 60 22 chr1 35529602 35530152 -207134201 + L2 LINE L2 2736 3302 -11 1788 227 121 23 chr1 35530851 35531323 -207133030 + MLT1H LTR MaLR 5 522 -27 575 299 87 17 chr1 35532463 35532694 -207131659 + MIR SINE MIR 10 256 -6 393 327 74 26 chr1 35533063 35533332 -207131021 - MLT1J LTR MaLR 0 511 230 255 31 0 0 chr1 35533425 35533457 -207130896 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 279 206 14 14 chr1 35533566 35533639 -207130714 - MLT1L LTR MaLR -538 77 5 300 53 0 0 chr1 35534247 35534285 -207130068 + (CTG)n Simple_repeat Simple_repeat 1 38 0 751 286 124 14 chr1 35534285 35534641 -207129712 + LTR16A1 LTR ERVL 63 457 0 302 288 84 71 chr1 35534806 35535129 -207129224 + L2 LINE L2 198 524 -2790 246 296 178 49 chr1 35535150 35535498 -207128855 + L1MC4a LINE L1 5575 5967 -1841 366 206 93 21 chr1 35536222 35536319 -207128034 + MIR SINE MIR 12 115 -147 278 181 264 0 chr1 35536328 35536400 -207127953 - MER91C DNA MER1_type -19 121 31 562 303 7 0 chr1 35536419 35536571 -207127782 + MIR SINE MIR 108 260 -2 228 271 0 0 chr1 35536572 35536631 -207127722 + (CACCAT)n Simple_repeat Simple_repeat 1 59 0 211 308 103 9 chr1 35537902 35538009 -207126344 - MIR SINE MIR -32 230 114 227 207 40 55 chr1 35538127 35538213 -207126140 + MLT1J2 LTR MaLR 83 166 -243 293 344 25 32 chr1 35538277 35538434 -207125919 + MLT1J2 LTR MaLR 264 419 -31 512 293 84 23 chr1 35539116 35539331 -207125022 - MIR SINE MIR -27 235 8 258 32 0 0 chr1 35539633 35539664 -207124689 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 442 248 77 93 chr1 35539737 35540048 -207124305 + MLT1I LTR MaLR 100 405 -4 227 256 0 0 chr1 35540524 35540567 -207123786 + L2 LINE L2 3008 3050 -263 429 299 29 15 chr1 35540973 35541110 -207123243 + L2 LINE L2 3134 3272 0 390 292 14 10 chr1 35541701 35541833 -207122520 + MIR SINE MIR 23 152 -56 1025 210 16 47 chr1 35542064 35542124 -207122229 + MIR SINE MIR 12 72 -190 1990 80 4 8 chr1 35542124 35542388 -207121965 - AluY SINE Alu 0 311 49 1025 210 16 47 chr1 35542388 35542584 -207121769 + MIR SINE MIR 72 260 -2 546 259 13 7 chr1 35543840 35543995 -207120358 + MIR SINE MIR 15 166 -62 613 302 31 47 chr1 35545600 35545918 -207118435 + MLT1K LTR MaLR 275 587 -1 195 162 0 0 chr1 35546236 35546273 -207118080 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 3583 233 50 17 chr1 35547333 35548859 -207115494 + L1ME2 LINE L1 2005 3585 -2797 2546 191 12 10 chr1 35548859 35549362 -207114991 + L1MB4 LINE L1 5677 6180 0 2632 218 57 40 chr1 35549362 35550599 -207113754 + L1ME2 LINE L1 5131 6390 -10 23 0 0 0 chr1 35550607 35550630 -207113723 + AT_rich Low_complexity Low_complexity 1 23 0 1372 314 98 39 chr1 35550655 35551707 -207112646 - L2 LINE L2 -339 2975 1862 196 341 0 24 chr1 35552058 35552140 -207112213 - L2 LINE L2 -2213 1101 1022 620 280 17 23 chr1 35552341 35552520 -207111833 + MIR3 SINE MIR 31 208 0 582 272 76 72 chr1 35553412 35553702 -207110651 - MLT1K LTR MaLR -8 580 290 258 95 0 0 chr1 35553709 35553751 -207110602 + (TC)n Simple_repeat Simple_repeat 1 42 0 487 343 42 39 chr1 35553751 35554037 -207110316 - MLT1K LTR MaLR -300 288 2 2414 134 108 5 chr1 35554864 35555252 -207109101 - MSTA LTR MaLR 0 428 1 9667 174 37 2 chr1 35555252 35556848 -207107505 - MSTA-int LTR MaLR 0 1651 1 255 91 0 0 chr1 35556849 35556882 -207107471 - MSTA LTR MaLR -395 33 1 1240 211 43 10 chr1 35557051 35557355 -207106998 + L1M4c LINE L1 4076 4389 -1993 697 199 37 0 chr1 35557355 35557491 -207106862 - MLT1A1 LTR MaLR 0 365 225 692 176 8 0 chr1 35557499 35557618 -207106735 + THE1-int LTR MaLR 1337 1456 -124 762 205 19 93 chr1 35557643 35557848 -207106505 - MLT1A1 LTR MaLR -171 194 5 3625 196 24 29 chr1 35557853 35558761 -207105592 + L1M4c LINE L1 4386 5289 -1093 278 266 36 57 chr1 35558758 35558950 -207105403 + L1MEc LINE L1 2023 2210 -4186 * 1829 262 129 36 chr1 35558954 35559537 -207104816 + L1MC4a LINE L1 6 642 -5767 506 155 23 50 chr1 35559650 35559783 -207104570 + MLT1D LTR MaLR 411 503 -2 1080 258 78 50 chr1 35559796 35560280 -207104073 + L1MC4a LINE L1 3863 4360 -2046 15744 229 36 12 chr1 35560292 35566605 -207097748 - L1PA16 LINE L1 0 6817 2 1681 255 44 21 chr1 35566611 35567222 -207097131 + L1MC4a LINE L1 4352 4976 -1430 743 187 41 12 chr1 35567237 35567352 -207097001 + L1MD2 LINE L1 6182 6305 -54 1387 211 9 19 chr1 35567352 35567669 -207096684 - L1MA10 LINE L1 -4 6330 6017 743 187 41 12 chr1 35567669 35567724 -207096629 + L1MD2 LINE L1 6305 6357 -2 645 263 65 76 chr1 35567735 35567950 -207096403 + L1M4 LINE L1 2110 2319 -3827 1846 168 0 49 chr1 35567950 35568278 -207096075 - AluSx SINE Alu 0 312 1 645 263 65 76 chr1 35568278 35568496 -207095857 + L1M4 LINE L1 2319 2538 -3608 435 19 0 0 chr1 35568526 35568578 -207095775 + (TA)n Simple_repeat Simple_repeat 2 53 0 796 267 38 3 chr1 35568592 35568880 -207095473 + L1M4 LINE L1 2675 2972 -3174 3251 203 38 1 chr1 35568947 35569689 -207094664 + L1M4 LINE L1 1 2047 -4518 1074 211 55 84 chr1 35570430 35570901 -207093452 + MLT1C LTR MaLR 19 467 0 232 381 10 0 chr1 35570904 35571001 -207093352 - MIR SINE MIR -122 140 43 416 338 7 0 chr1 35571284 35571420 -207092933 + L2 LINE L2 3134 3270 -2 23 0 0 0 chr1 35571810 35571833 -207092520 + AT_rich Low_complexity Low_complexity 1 23 0 573 296 41 58 chr1 35571966 35572465 -207091888 + L1MC4a LINE L1 5163 5652 -1003 1311 138 69 11 chr1 35572465 35572725 -207091628 - L1MA8 LINE L1 -2 6289 6015 573 296 41 58 chr1 35572725 35572927 -207091426 + L1MC4a LINE L1 5652 5856 -799 779 289 92 16 chr1 35573716 35574020 -207090333 + L1MC4a LINE L1 5829 6155 -1913 685 258 0 6 chr1 35576028 35576187 -207088166 + MIR SINE MIR 94 251 -11 559 241 128 27 chr1 35576235 35576422 -207087931 - MIR SINE MIR -55 207 2 855 204 82 5 chr1 35576674 35576870 -207087483 - MIR SINE MIR -49 213 3 413 250 122 47 chr1 35577096 35577268 -207087085 + MIR3 SINE MIR 15 199 -9 251 370 188 0 chr1 35577501 35577666 -207086687 + L3 LINE CR1 1312 1507 -70 305 212 42 144 chr1 35577721 35577839 -207086514 - L2 LINE L2 0 3272 3167 465 34 0 0 chr1 35579177 35579236 -207085117 + (GA)n Simple_repeat Simple_repeat 2 60 0 310 208 42 14 chr1 35579243 35579315 -207085038 - MIR SINE MIR -150 112 39 1329 221 36 70 chr1 35580263 35580648 -207083705 + MLT1A2 LTR MaLR 1 372 -2 663 269 157 19 chr1 35580887 35581103 -207083250 + MIR SINE MIR 17 262 0 233 211 158 90 chr1 35581190 35581280 -207083073 + MLT1J LTR MaLR 236 339 -172 231 36 0 0 chr1 35581280 35581308 -207083045 + (TA)n Simple_repeat Simple_repeat 2 29 0 233 211 158 90 chr1 35581308 35581350 -207083003 + MLT1J LTR MaLR 339 377 -134 455 176 25 101 chr1 35581365 35581484 -207082869 - MIR SINE MIR -107 155 46 236 225 188 0 chr1 35582021 35582101 -207082252 - MIR3 SINE MIR -8 200 106 578 268 115 21 chr1 35582123 35582358 -207081995 - MIR SINE MIR -5 257 1 1031 228 60 0 chr1 35583000 35583233 -207081120 + MIR SINE MIR 16 262 0 870 193 10 51 chr1 35584132 35584329 -207080024 + MER5A DNA MER1_type 1 189 0 927 210 17 6 chr1 35584336 35584512 -207079841 + MER5B DNA MER1_type 1 178 0 194 261 0 31 chr1 35585356 35585421 -207078932 - MIR SINE MIR -14 248 186 691 243 131 63 chr1 35585472 35585839 -207078514 + MLT1I LTR MaLR 16 407 -2 2474 130 18 66 chr1 35585878 35586332 -207078021 - Tigger2a DNA MER2_type -2 432 1 424 260 124 28 chr1 35586332 35586509 -207077844 - MIR SINE MIR -62 200 7 578 299 82 0 chr1 35587885 35588092 -207076261 - MER58A DNA MER1_type 0 224 1 774 313 96 57 chr1 35588547 35589575 -207074778 + L2 LINE L2 2258 3313 0 182 118 29 0 chr1 35589623 35589657 -207074696 + CT-rich Low_complexity Low_complexity 6 40 0 1833 155 36 12 chr1 35589728 35590064 -207074289 - L1MB1 LINE L1 0 6168 5825 339 239 65 0 chr1 35590222 35590314 -207074039 + MIR SINE MIR 111 208 -54 356 236 90 0 chr1 35590435 35590524 -207073829 + L2 LINE L2 3193 3289 -24 1725 135 0 19 chr1 35590674 35590956 -207073397 + AluSx SINE Alu 42 312 0 400 315 100 85 chr1 35591587 35591927 -207072426 + L2 LINE L2 2927 3271 -1 691 306 85 20 chr1 35591993 35592287 -207072066 - MLT1I LTR MaLR -34 375 63 2267 100 0 19 chr1 35592404 35592715 -207071638 + AluSx SINE Alu 7 311 -1 362 265 23 30 chr1 35593324 35593456 -207070897 + Charlie8 DNA MER1_type 88 218 -2199 234 0 0 0 chr1 35593606 35593632 -207070721 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 43755 33 21 2 chr1 35593675 35599708 -207064645 - L1PA3 LINE L1 -1 6154 2 278 214 0 0 chr1 35600977 35601033 -207063320 + L1MEd LINE L1 1241 1296 -4909 23 33 0 0 chr1 35601209 35601239 -207063114 + AT_rich Low_complexity Low_complexity 1 30 0 529 313 32 36 chr1 35601326 35601914 -207062439 + L1MEd LINE L1 2144 2686 -3529 511 274 93 20 chr1 35601991 35602443 -207061910 + L1MEd LINE L1 2806 3290 -2925 503 175 16 71 chr1 35602448 35602574 -207061779 - Tigger1 DNA MER2_type -2129 289 171 1673 161 81 0 chr1 35602575 35602836 -207061517 + AluJb SINE Alu 1 282 -30 298 326 87 30 chr1 35602984 35603129 -207061224 - L2 LINE L2 -2202 1112 977 318 26 0 0 chr1 35603129 35603168 -207061185 + (TG)n Simple_repeat Simple_repeat 1 39 0 298 326 87 30 chr1 35603168 35603390 -207060963 - L2 LINE L2 -2337 977 724 2733 88 8 3 chr1 35603394 35603767 -207060586 - THE1C LTR MaLR 0 375 1 2153 141 43 27 chr1 35603780 35604156 -207060197 - MLT1B LTR MaLR -8 382 1 420 296 73 66 chr1 35604157 35604582 -207059771 - L2 LINE L2 -2592 722 295 989 147 0 0 chr1 35604756 35604912 -207059441 - L1PA15 LINE L1 -1 6164 6009 3154 129 28 2 chr1 35605559 35606061 -207058292 - L1PA16 LINE L1 -2 6164 5650 5074 34 0 2 chr1 35606188 35606776 -207057577 - L1PA5 LINE L1 -4 6150 5564 235 250 185 9 chr1 35606803 35606911 -207057442 - L2 LINE L2 -33 3239 3113 1964 58 39 0 chr1 35607164 35607421 -207056932 + L1PA13 LINE L1 5896 6162 -1 300 322 79 0 chr1 35607566 35607743 -207056610 + L2 LINE L2 1527 1717 -1597 394 327 25 6 chr1 35607941 35608100 -207056253 + L2 LINE L2 2544 2705 -609 408 279 32 38 chr1 35608308 35608466 -207055887 - L2 LINE L2 -531 2783 2627 193 333 0 11 chr1 35608475 35608565 -207055788 - L2 LINE L2 -803 2511 2423 4783 101 1 3 chr1 35608586 35609243 -207055110 + L1PA13 LINE L1 5488 6143 -20 731 279 71 109 chr1 35609501 35610679 -207053674 + L2 LINE L2 951 2083 -1231 942 234 25 0 chr1 35610755 35610952 -207053401 + MLT1H LTR MaLR 1 202 -347 206 328 58 87 chr1 35611114 35611425 -207052928 + L2 LINE L2 2882 3183 -89 1031 213 16 103 chr1 35612401 35612587 -207051766 + MLT1J1 LTR MaLR 1 149 -297 869 151 0 7 chr1 35612587 35612739 -207051614 + L1MB3 LINE L1 6032 6182 -1 1031 213 16 103 chr1 35612739 35612872 -207051481 + MLT1J1 LTR MaLR 149 292 -154 1693 231 75 33 chr1 35612941 35613504 -207050849 - MLT1F1 LTR MaLR -3 564 1 408 250 71 14 chr1 35614663 35614803 -207049550 - MIR3 SINE MIR -7 201 54 432 264 82 23 chr1 35614838 35615058 -207049295 - L2 LINE L2 0 3313 3081 398 253 173 13 chr1 35616146 35616296 -207048057 - MER5A DNA MER1_type -6 183 10 505 287 92 11 chr1 35616492 35616666 -207047687 + MER91A DNA MER1_type 6 193 -3 553 230 176 115 chr1 35617019 35617410 -207046943 - L2 LINE L2 0 3313 2899 476 150 0 143 chr1 35617633 35617773 -207046580 - L2 LINE L2 0 3313 3194 5734 138 42 12 chr1 35618137 35619285 -207045068 + L1MA4 LINE L1 5114 6289 -11 194 388 0 0 chr1 35619357 35619424 -207044929 + L2 LINE L2 3202 3268 -4 213 333 0 0 chr1 35619564 35619630 -207044723 + L2 LINE L2 3247 3312 -1 1054 200 42 114 chr1 35620738 35621209 -207043144 + MLT1C LTR MaLR 19 467 0 204 381 10 0 chr1 35621212 35621309 -207043044 - MIR SINE MIR -122 140 43 380 338 7 0 chr1 35621592 35621728 -207042625 + L2 LINE L2 3134 3270 -2 23 0 0 0 chr1 35622118 35622141 -207042212 + AT_rich Low_complexity Low_complexity 1 23 0 545 287 44 75 chr1 35622274 35622773 -207041580 + L1MC4a LINE L1 4903 5389 -975 1246 138 69 11 chr1 35622773 35623033 -207041320 - L1MA8 LINE L1 -2 6289 6015 545 287 44 75 chr1 35623033 35623235 -207041118 + L1MC4a LINE L1 5389 5596 -768 756 289 92 16 chr1 35624024 35624328 -207040025 + L1MC4a LINE L1 5569 5895 -1913 637 258 0 6 chr1 35626336 35626495 -207037858 + MIR SINE MIR 94 251 -11 502 241 128 27 chr1 35626543 35626730 -207037623 - MIR SINE MIR -55 207 2 794 198 44 6 chr1 35626996 35627178 -207037175 - MIR SINE MIR -71 191 3 363 265 146 13 chr1 35627428 35627579 -207036774 + MIR3 SINE MIR 33 203 -5 270 220 42 144 chr1 35628029 35628147 -207036206 - L2 LINE L2 0 3272 3167 393 39 0 0 chr1 35629485 35629536 -207034817 + (GA)n Simple_repeat Simple_repeat 2 52 0 284 208 42 14 chr1 35629543 35629615 -207034738 - MIR SINE MIR -150 112 39 1215 221 36 70 chr1 35630563 35630948 -207033405 + MLT1A2 LTR MaLR 1 372 -2 597 269 157 19 chr1 35631187 35631403 -207032950 + MIR SINE MIR 17 262 0 228 211 158 90 chr1 35631490 35631580 -207032773 + MLT1J LTR MaLR 236 339 -172 213 39 0 0 chr1 35631580 35631606 -207032747 + (TA)n Simple_repeat Simple_repeat 2 27 0 228 211 158 90 chr1 35631606 35631648 -207032705 + MLT1J LTR MaLR 339 377 -134 418 176 25 101 chr1 35631663 35631782 -207032571 - MIR SINE MIR -107 155 46 214 225 188 0 chr1 35632319 35632399 -207031954 - MIR3 SINE MIR -8 200 106 505 268 115 21 chr1 35632421 35632656 -207031697 - MIR SINE MIR -5 257 1 954 225 61 0 chr1 35633298 35633529 -207030824 + MIR SINE MIR 16 260 -2 814 193 10 51 chr1 35634431 35634628 -207029725 + MER5A DNA MER1_type 1 189 0 927 210 17 6 chr1 35634635 35634811 -207029542 + MER5B DNA MER1_type 1 178 0 212 261 0 31 chr1 35635655 35635720 -207028633 - MIR SINE MIR -14 248 186 691 243 131 63 chr1 35635771 35636138 -207028215 + MLT1I LTR MaLR 16 407 -2 2590 132 18 66 chr1 35636177 35636631 -207027722 - Tigger2a DNA MER2_type -2 432 1 477 260 124 28 chr1 35636631 35636808 -207027545 - MIR SINE MIR -62 200 7 624 290 87 5 chr1 35638184 35638391 -207025962 - MER58A DNA MER1_type 0 224 1 974 310 96 57 chr1 35638846 35639874 -207024479 + L2 LINE L2 2258 3313 0 182 118 29 0 chr1 35639922 35639956 -207024397 + CT-rich Low_complexity Low_complexity 6 40 0 1947 152 36 12 chr1 35640027 35640363 -207023990 - L1MB1 LINE L1 0 6168 5825 367 239 65 0 chr1 35640521 35640613 -207023740 + MIR SINE MIR 111 208 -54 379 239 91 0 chr1 35640734 35640822 -207023531 + L2 LINE L2 3193 3288 -25 1709 135 0 19 chr1 35640973 35641255 -207023098 + AluSx SINE Alu 42 312 0 496 315 100 85 chr1 35641886 35642226 -207022127 + L2 LINE L2 2927 3271 -1 695 306 85 20 chr1 35642292 35642586 -207021767 - MLT1I LTR MaLR -34 375 63 2270 97 0 19 chr1 35642703 35643014 -207021339 + AluSx SINE Alu 7 311 -1 376 265 23 30 chr1 35643623 35643755 -207020598 + Charlie8 DNA MER1_type 99 229 -2188 207 0 0 0 chr1 35643905 35643928 -207020425 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 43833 33 21 1 chr1 35643974 35650000 -207014353 - L1PA3 LINE L1 -1 6154 2 280 214 0 0 chr1 35651269 35651325 -207013028 + L1MEd LINE L1 1241 1296 -4909 23 33 0 0 chr1 35651501 35651531 -207012822 + AT_rich Low_complexity Low_complexity 1 30 0 961 299 94 26 chr1 35651618 35652735 -207011618 + L1MEd LINE L1 2144 3290 -2925 514 175 16 71 chr1 35652740 35652866 -207011487 - Tigger1 DNA MER2_type -2129 289 171 1659 161 81 0 chr1 35652867 35653128 -207011225 + AluJb SINE Alu 1 282 -30 1050 122 0 0 chr1 35653146 35653326 -207011027 + (TC)n Simple_repeat Simple_repeat 1 180 0 357 24 0 0 chr1 35653325 35653367 -207010986 + (CA)n Simple_repeat Simple_repeat 1 42 0 * 2022 107 0 7 chr1 35653385 35653656 -207010697 + AluSq SINE Alu 1 269 -44 1107 150 0 6 chr1 35653677 35653850 -207010503 - Tigger1 DNA MER2_type -2242 176 5 3024 163 100 9 chr1 35653861 35654401 -207009952 - MLT1D-int LTR MaLR -633 738 142 5765 165 9 4 chr1 35654401 35655320 -207009033 - MER49 LTR ERV1 0 923 1 3024 163 100 9 chr1 35655320 35655349 -207009004 - MLT1D-int LTR MaLR -1229 142 117 1480 44 0 22 chr1 35655427 35655608 -207008745 + L1PA11 LINE L1 5996 6172 -2 4174 259 66 19 chr1 35655618 35657270 -207007083 + L1ME3A LINE L1 2045 3746 -2469 1762 208 134 36 chr1 35657273 35658242 -207006111 + L1ME3A LINE L1 3883 4940 -1275 1721 209 65 51 chr1 35658242 35658734 -207005619 - MLT1D LTR MaLR 0 505 7 1321 224 84 32 chr1 35658746 35659184 -207005169 + L1ME3A LINE L1 4942 5402 -813 1948 165 0 0 chr1 35659184 35659481 -207004872 + AluSx SINE Alu 1 297 -15 793 255 67 29 chr1 35659481 35659828 -207004525 + L1ME3A LINE L1 5748 6100 -90 242 322 0 0 chr1 35659979 35660038 -207004315 - MIR SINE MIR -116 92 34 252 282 0 0 chr1 35660899 35660970 -207003383 - L2 LINE L2 -236 3036 2966 240 35 0 0 chr1 35661243 35661272 -207003081 + (TA)n Simple_repeat Simple_repeat 2 30 0 28 71 0 0 chr1 35661274 35661330 -207003023 + AT_rich Low_complexity Low_complexity 1 56 0 206 393 72 23 chr1 35661492 35661797 -207002556 - L2 LINE L2 -557 2757 2438 2862 110 0 0 chr1 35661814 35662178 -207002175 - THE1B LTR MaLR 0 364 1 232 267 35 103 chr1 35662590 35662650 -207001703 - MIR SINE MIR -152 110 60 875 246 39 27 chr1 35662650 35662906 -207001447 - MIR SINE MIR 0 262 4 232 267 35 103 chr1 35662906 35662961 -207001392 - MIR SINE MIR -202 60 3 25 0 0 0 chr1 35663588 35663613 -207000740 + AT_rich Low_complexity Low_complexity 1 25 0 242 299 31 71 chr1 35663971 35664098 -207000255 + L2 LINE L2 2686 2807 -507 3254 126 107 44 chr1 35664126 35664714 -206999639 - MER51A LTR ERV1 -9 625 1 195 261 22 0 chr1 35664833 35664879 -206999474 + MIR SINE MIR 8 54 -208 462 345 64 16 chr1 35664880 35665129 -206999224 - MLT1K LTR MaLR -326 262 2 2101 201 22 65 chr1 35665144 35665685 -206998668 + MER113 DNA MER1_type? 4 521 0 497 334 94 28 chr1 35665927 35666397 -206997956 + L2 LINE L2 2371 2871 -443 404 284 90 77 chr1 35666465 35666775 -206997578 + L2 LINE L2 2950 3263 -9 5179 181 13 5 chr1 35667777 35668699 -206995654 - MER63C DNA MER1_type 0 930 2 887 204 92 29 chr1 35668971 35669177 -206995176 - MER20 DNA MER1_type 0 219 1 378 240 96 10 chr1 35669199 35669303 -206995050 - L2 LINE L2 0 3313 3201 346 294 59 25 chr1 35669333 35669452 -206994901 + L2 LINE L2 3141 3263 -9 2025 217 94 6 chr1 35669623 35670164 -206994189 - MLT1E3 LTR MaLR -4 620 7 212 302 0 0 chr1 35670307 35670370 -206993983 - MIR SINE MIR -54 208 146 193 159 45 0 chr1 35670371 35670415 -206993938 + L2 LINE L2 2936 2981 -332 2593 294 55 58 chr1 35670445 35671378 -206992975 + L1MC4 LINE L1 7112 8041 -1 209 206 16 16 chr1 35671424 35671487 -206992866 + L2 LINE L2 3103 3165 -148 * 254 222 48 16 chr1 35671466 35671529 -206992824 - MIR SINE MIR -54 208 144 206 319 43 21 chr1 35671528 35671622 -206992731 + L2 LINE L2 2935 3030 -283 * 588 225 47 0 chr1 35671639 35671768 -206992585 + L2 LINE L2 3174 3308 -5 1549 247 160 45 chr1 35671930 35672461 -206991892 + MLT1E LTR MaLR 1 592 -1 2168 126 0 0 chr1 35672660 35672953 -206991400 + AluSg SINE Alu 1 293 -17 1631 217 21 47 chr1 35673892 35674275 -206990078 - MLT1A2 LTR MaLR 0 374 2 1141 215 197 67 chr1 35674337 35674882 -206989471 + LTR50 LTR ERVL 83 793 -2 388 306 54 0 chr1 35675091 35675238 -206989115 + L2 LINE L2 3159 3313 0 222 150 0 0 chr1 35675251 35675291 -206989062 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 2147 96 26 23 chr1 35675382 35675684 -206988669 + AluSc SINE Alu 1 303 -6 267 240 39 106 chr1 35675684 35675788 -206988565 - MLT1J LTR MaLR -41 470 374 340 240 20 10 chr1 35675864 35676013 -206988340 - MLT1J LTR MaLR -313 198 6 206 302 62 52 chr1 35676227 35676323 -206988030 + L3 LINE CR1 900 996 -581 400 311 134 0 chr1 35676366 35676530 -206987823 + MIR SINE MIR 77 262 0 2084 137 13 0 chr1 35676625 35676925 -206987428 + AluSx SINE Alu 1 304 -8 213 311 74 8 chr1 35676925 35677035 -206987318 + L3 LINE CR1 1111 1231 -346 2262 81 3 20 chr1 35677035 35677330 -206987023 + AluSc SINE Alu 1 290 -19 213 311 74 8 chr1 35677330 35677341 -206987012 + L3 LINE CR1 1231 1240 -337 247 229 0 0 chr1 35677466 35677514 -206986839 + L2 LINE L2 3163 3210 -62 2500 61 0 3 chr1 35677902 35678212 -206986141 + AluY SINE Alu 1 309 -2 218 250 42 0 chr1 35678226 35678274 -206986079 - L2 LINE L2 -8 3264 3215 2944 233 135 54 chr1 35678311 35679730 -206984623 - HAL1 LINE L1 -1 2506 972 306 298 71 71 chr1 35680089 35680425 -206983928 - HAL1 LINE L1 -2171 336 1 425 316 29 0 chr1 35680964 35681103 -206983250 + MER117 DNA MER1_type 6 148 -49 432 299 88 44 chr1 35681157 35681408 -206982945 - L3 LINE CR1 -859 718 457 180 0 0 0 chr1 35681745 35681765 -206982588 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 23 0 0 0 chr1 35682180 35682203 -206982150 + AT_rich Low_complexity Low_complexity 1 23 0 310 327 0 10 chr1 35682737 35682838 -206981515 + L2 LINE L2 2971 3070 -202 263 250 102 23 chr1 35683168 35683256 -206981097 + L2 LINE L2 3172 3266 -47 301 245 7 142 chr1 35683642 35683719 -206980634 - MER94 DNA DNA 0 134 87 1943 155 0 3 chr1 35683719 35684009 -206980344 - AluSx SINE Alu -23 289 1 301 245 7 142 chr1 35684009 35684086 -206980267 - MER94 DNA DNA -47 87 1 1832 290 112 36 chr1 35684281 35684756 -206979597 + L2 LINE L2 1936 2373 -940 2149 117 0 0 chr1 35684756 35685082 -206979271 - AluSx SINE Alu 0 326 1 1832 290 112 36 chr1 35685082 35685873 -206978480 + L2 LINE L2 2373 3313 0 347 173 27 0 chr1 35686866 35686941 -206977412 + GA-rich Low_complexity Low_complexity 4 80 0 2450 103 0 0 chr1 35686965 35687276 -206977077 + AluSq SINE Alu 2 312 -1 450 233 0 8 chr1 35687318 35687438 -206976915 - MER103 DNA DNA -46 120 2 216 149 21 43 chr1 35688633 35688680 -206975673 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 448 230 169 7 chr1 35688756 35688904 -206975449 + MIR SINE MIR 85 256 -6 828 255 30 0 chr1 35689068 35689268 -206975085 + MER3 DNA MER1_type 1 206 -3 448 262 10 0 chr1 35689407 35689510 -206974843 + L2 LINE L2 3210 3313 0 222 283 17 0 chr1 35689512 35689572 -206974781 + GA-rich Low_complexity Low_complexity 3 63 0 399 311 25 0 chr1 35689580 35689702 -206974651 - L3 LINE CR1 -110 1467 1343 2309 102 3 0 chr1 35689853 35690147 -206974206 + AluSg SINE Alu 1 295 -15 446 341 109 0 chr1 35690157 35690368 -206973985 - MIR SINE MIR -8 254 21 318 98 0 0 chr1 35691468 35691519 -206972834 + (TG)n Simple_repeat Simple_repeat 2 52 0 952 146 27 16 chr1 35691677 35691862 -206972491 + MER53 DNA DNA 3 189 0 331 301 78 95 chr1 35691864 35692210 -206972143 + MLT1I LTR MaLR 57 396 -13 545 220 120 33 chr1 35692211 35692377 -206971976 + MIR SINE MIR 69 248 -14 381 226 78 0 chr1 35692884 35692986 -206971367 + MIR SINE MIR 32 141 -121 395 169 13 0 chr1 35693292 35693369 -206970984 + MIR SINE MIR 168 245 -17 378 0 0 0 chr1 35693500 35693542 -206970811 + (CA)n Simple_repeat Simple_repeat 2 43 0 266 257 114 84 chr1 35695163 35695400 -206968953 - MIR SINE MIR 0 262 19 722 202 0 8 chr1 35695928 35696057 -206968296 - FLAM_A SINE Alu -5 128 1 204 254 48 0 chr1 35696140 35696203 -206968150 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 475 154 0 136 chr1 35697229 35697339 -206967014 + MER2 DNA MER2_type 1 95 -250 2009 123 39 0 chr1 35697378 35697662 -206966691 + AluSx SINE Alu 1 295 -17 894 178 225 4 chr1 35697742 35697896 -206966457 + MER2 DNA MER2_type 64 183 -162 215 30 0 30 chr1 35697896 35697929 -206966424 + (TTG)n Simple_repeat Simple_repeat 2 33 0 894 178 225 4 chr1 35697929 35698005 -206966348 + MER2 DNA MER2_type 183 345 0 524 222 48 8 chr1 35697994 35698120 -206966233 + MER94 DNA DNA 2 132 -2 * 29 28 0 0 chr1 35699200 35699236 -206965117 + AT_rich Low_complexity Low_complexity 1 36 0 395 226 11 17 chr1 35700232 35700409 -206963944 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 218 194 32 32 chr1 35700427 35700489 -206963864 + CT-rich Low_complexity Low_complexity 1 62 0 242 311 0 0 chr1 35700530 35700591 -206963762 - L2 LINE L2 -87 3185 3125 191 270 68 14 chr1 35700678 35700752 -206963601 - L2 LINE L2 -39 3274 3197 253 358 188 0 chr1 35702661 35702826 -206961527 + MER91A DNA MER1_type 1 196 0 265 255 108 20 chr1 35703764 35703866 -206960487 + MIR SINE MIR 16 126 -82 260 303 278 0 chr1 35704069 35704231 -206960122 + MIR SINE MIR 34 240 -22 291 71 0 0 chr1 35704987 35705029 -206959324 + (CA)n Simple_repeat Simple_repeat 2 43 0 441 294 128 32 chr1 35705367 35705585 -206958768 + MIR SINE MIR 20 258 -4 690 195 47 86 chr1 35706008 35706264 -206958089 + L1MC5 LINE L1 7659 7904 -57 219 268 84 0 chr1 35706521 35706592 -206957761 + MIR SINE MIR 176 252 -10 278 338 28 41 chr1 35707021 35707257 -206957096 - MIR SINE MIR -12 250 19 938 255 16 20 chr1 35707331 35707582 -206956771 - L3 LINE CR1 -778 799 550 787 282 179 14 chr1 35707791 35708299 -206956054 + L2 LINE L2 2706 3311 -2 194 286 0 32 chr1 35709304 35709367 -206954986 + MIR SINE MIR 2 62 -200 342 146 13 172 chr1 35709456 35709607 -206954746 - MIR SINE MIR 0 262 136 257 192 19 0 chr1 35709706 35709758 -206954595 + MLT1H LTR MaLR 223 275 -274 629 214 29 0 chr1 35709846 35709986 -206954367 + MLT1H LTR MaLR 406 549 0 526 261 65 7 chr1 35709986 35710139 -206954214 - MIR SINE MIR -99 163 2 455 298 69 27 chr1 35710178 35710531 -206953822 - L2 LINE L2 -187 3085 2709 339 348 103 13 chr1 35710595 35710819 -206953534 - MIR SINE MIR -6 256 13 471 211 16 16 chr1 35710840 35710963 -206953390 + MIR3 SINE MIR 6 128 -80 237 220 20 10 chr1 35711445 35711545 -206952808 + (CA)n Simple_repeat Simple_repeat 1 101 0 424 244 6 6 chr1 35711617 35711777 -206952576 + (CA)n Simple_repeat Simple_repeat 1 160 0 207 216 0 0 chr1 35712291 35712328 -206952025 + MIR SINE MIR 118 154 -108 325 279 45 27 chr1 35712618 35712729 -206951624 - MER5A DNA MER1_type -20 169 57 601 301 62 18 chr1 35713686 35713912 -206950441 + MIR SINE MIR 21 256 -6 363 303 74 8 chr1 35714066 35714188 -206950165 - L2 LINE L2 -2 3270 3141 469 295 114 12 chr1 35714639 35714847 -206949506 - MIR SINE MIR -1 261 38 253 345 26 0 chr1 35714967 35715080 -206949273 - L2 LINE L2 -225 3047 2932 2308 118 0 9 chr1 35715540 35715855 -206948498 + AluSx SINE Alu 1 312 0 2389 104 0 3 chr1 35717148 35717446 -206946907 - AluSq SINE Alu -15 298 2 339 320 68 20 chr1 35717460 35717607 -206946746 + L2 LINE L2 3115 3268 -4 250 301 11 0 chr1 35717823 35717916 -206946437 + L2 LINE L2 2350 2443 -871 727 276 58 88 chr1 35718369 35718799 -206945554 + L2 LINE L2 2493 2883 -430 2042 155 0 3 chr1 35718799 35719108 -206945245 - AluJo SINE Alu -4 308 1 727 276 58 88 chr1 35719108 35719525 -206944828 + L2 LINE L2 2883 3311 -2 408 368 135 34 chr1 35719583 35720138 -206944215 + L3 LINE CR1 966 1576 -1 330 292 0 21 chr1 35720445 35720541 -206943812 + MIR SINE MIR 47 140 -122 363 308 89 24 chr1 35720798 35720967 -206943386 - MIR SINE MIR -49 213 34 264 30 0 0 chr1 35721255 35721288 -206943065 + (CAA)n Simple_repeat Simple_repeat 1 33 0 276 258 28 63 chr1 35721364 35721517 -206942836 - MIR SINE MIR -61 147 45 289 220 92 37 chr1 35722061 35722170 -206942183 + MIR SINE MIR 130 244 -18 298 333 140 14 chr1 35724290 35724512 -206939841 - MIR SINE MIR 0 262 13 242 194 65 0 chr1 35724795 35724857 -206939496 + MIR SINE MIR 48 113 -149 335 319 25 44 chr1 35724865 35725069 -206939284 - L2 LINE L2 0 3313 3114 227 59 29 0 chr1 35725237 35725271 -206939082 + MADE1 DNA Mariner 45 79 -1 190 318 35 0 chr1 35725271 35725356 -206938997 - L2 LINE L2 -206 3107 3020 290 140 0 0 chr1 35725412 35725462 -206938891 + L2 LINE L2 3264 3313 0 187 172 0 0 chr1 35725478 35725507 -206938846 + L2 LINE L2 3263 3291 -22 180 0 0 0 chr1 35725929 35725949 -206938404 + (A)n Simple_repeat Simple_repeat 1 20 0 278 261 62 51 chr1 35726047 35726223 -206938130 + MER3 DNA MER1_type 32 209 0 * 873 144 29 17 chr1 35726066 35726240 -206938113 - MER3 DNA MER1_type -6 203 28 483 263 42 94 chr1 35726252 35726336 -206938017 + MIR SINE MIR 31 118 -144 1773 162 61 24 chr1 35726336 35726712 -206937641 - MLT1B LTR MaLR 0 390 1 483 263 42 94 chr1 35726712 35726840 -206937513 + MIR SINE MIR 118 232 -30 205 366 0 12 chr1 35727220 35727302 -206937051 - L2 LINE L2 -38 3234 3154 622 254 49 5 chr1 35727372 35727557 -206936796 + MIR SINE MIR 70 262 0 492 312 87 9 chr1 35728537 35728755 -206935598 + MIR SINE MIR 14 248 -14 240 35 0 0 chr1 35729653 35729682 -206934671 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 252 297 0 0 chr1 35729687 35729751 -206934602 - L2 LINE L2 0 3272 3209 380 309 90 62 chr1 35729754 35730515 -206933838 - L2 LINE L2 -225 3047 2258 240 296 88 75 chr1 35730722 35730948 -206933405 + L2 LINE L2 3044 3272 0 260 137 78 20 chr1 35731017 35731068 -206933285 - MLT1J2 LTR MaLR -10 440 387 354 23 0 0 chr1 35731500 35731543 -206932810 + (TC)n Simple_repeat Simple_repeat 1 43 0 2177 142 18 28 chr1 35732219 35732613 -206931740 + MLT1B LTR MaLR 1 390 0 191 294 76 0 chr1 35732621 35732713 -206931640 + L2 LINE L2 2752 2850 -464 207 0 0 0 chr1 35732835 35732858 -206931495 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 681 155 0 17 chr1 35732861 35732977 -206931376 - FRAM SINE Alu -31 145 32 413 283 202 16 chr1 35732985 35733243 -206931110 + L2 LINE L2 3008 3313 0 399 145 0 0 chr1 35735474 35735557 -206928796 + (TG)n Simple_repeat Simple_repeat 1 83 0 221 226 0 19 chr1 35736142 35736195 -206928158 + (CCG)n Simple_repeat Simple_repeat 1 52 0 394 331 0 31 chr1 35736291 35736454 -206927899 + C-rich Low_complexity Low_complexity 3 160 0 183 139 0 0 chr1 35737050 35737086 -206927267 + (CGG)n Simple_repeat Simple_repeat 1 36 0 235 0 0 54 chr1 35737462 35737499 -206926854 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2442 89 0 9 chr1 35738247 35738563 -206925790 - AluSq SINE Alu 0 313 1 665 331 120 48 chr1 35738876 35738945 -206925408 + L2 LINE L2 1566 1629 -1685 2311 82 10 13 chr1 35738945 35739249 -206925104 - AluSp SINE Alu -10 303 1 665 331 120 48 chr1 35739249 35740106 -206924247 + L2 LINE L2 1629 2558 -756 279 319 43 22 chr1 35740404 35740542 -206923811 + L2 LINE L2 3171 3311 -2 197 295 172 8 chr1 35741150 35741272 -206923081 + MIR SINE MIR 108 249 -13 742 286 92 4 chr1 35741377 35741604 -206922749 - MIR SINE MIR 0 262 16 194 273 39 78 chr1 35741952 35742029 -206922324 + L2 LINE L2 3182 3255 -17 338 331 14 42 chr1 35742256 35742398 -206921955 - MIR SINE MIR -105 157 20 235 274 0 0 chr1 35742397 35742459 -206921894 + MIR SINE MIR 201 262 0 * 208 299 10 41 chr1 35743366 35743463 -206920890 + (ATAGG)n Simple_repeat Simple_repeat 4 97 0 * 391 263 11 59 chr1 35743425 35743670 -206920683 + (GGATG)n Simple_repeat Simple_repeat 1 233 0 426 333 0 0 chr1 35745143 35745260 -206919093 + MIR SINE MIR 30 146 -62 242 232 205 46 chr1 35745327 35745478 -206918875 - L3 LINE CR1 -11 1566 1392 2411 97 0 0 chr1 35746114 35746412 -206917941 + AluSg SINE Alu 1 298 -12 563 322 47 49 chr1 35746456 35747263 -206917090 - L1ME3A LINE L1 -230 5940 5127 188 290 43 14 chr1 35747514 35747583 -206916770 - L2 LINE L2 -2 3270 3200 2532 147 14 53 chr1 35747620 35747823 -206916530 + L1MB3 LINE L1 5688 5897 -286 2134 135 0 0 chr1 35747823 35748126 -206916227 + AluSx SINE Alu 1 303 -9 2532 147 14 53 chr1 35748126 35748431 -206915922 + L1MB3 LINE L1 5897 6176 -7 235 323 73 42 chr1 35748439 35748631 -206915722 - L2 LINE L2 -189 3083 2886 1636 167 0 38 chr1 35748989 35749282 -206915071 + AluJo SINE Alu 1 282 -30 276 186 0 0 chr1 35749305 35749364 -206914989 + GA-rich Low_complexity Low_complexity 4 62 0 279 322 0 0 chr1 35749496 35749586 -206914767 + CT-rich Low_complexity Low_complexity 4 93 0 1666 179 0 24 chr1 35750199 35750495 -206913858 - AluJo SINE Alu -9 303 15 565 285 115 0 chr1 35750562 35750727 -206913626 - MIR SINE MIR -70 192 9 2142 143 0 9 chr1 35750755 35751070 -206913283 + AluJo SINE Alu 1 312 0 286 321 36 36 chr1 35751070 35751207 -206913146 - MER5A DNA MER1_type -51 138 2 312 283 242 8 chr1 35752203 35752323 -206912030 + MER5A DNA MER1_type 41 188 -1 202 274 137 20 chr1 35752392 35752494 -206911859 + MIR SINE MIR 112 225 -37 422 221 21 11 chr1 35752528 35752623 -206911730 + L2 LINE L2 3202 3297 -16 225 0 0 0 chr1 35752624 35752649 -206911704 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 373 317 163 35 chr1 35753335 35753852 -206910501 + L2 LINE L2 1567 2016 -1298 2543 74 0 3 chr1 35753852 35754164 -206910189 - AluY SINE Alu 0 311 1 373 317 163 35 chr1 35754164 35754536 -206909817 + L2 LINE L2 2016 2570 -744 682 197 141 7 chr1 35754940 35755082 -206909271 + FRAM SINE Alu 1 160 -16 238 341 42 83 chr1 35757465 35757802 -206906551 - L2 LINE L2 -9 3304 2982 479 325 27 16 chr1 35757934 35758122 -206906231 - MIR SINE MIR -16 246 57 581 325 47 26 chr1 35758263 35758497 -206905856 - MIR SINE MIR -1 261 23 208 284 62 25 chr1 35759031 35759112 -206905241 - L2 LINE L2 -50 3222 3139 1141 266 147 24 chr1 35759142 35759912 -206904441 + L2 LINE L2 2443 3313 0 280 259 0 0 chr1 35760244 35760302 -206904051 + MIR SINE MIR 13 70 -192 418 273 100 40 chr1 35760392 35760589 -206903764 + MIR SINE MIR 21 227 -35 453 301 160 37 chr1 35760763 35760815 -206903538 + L2 LINE L2 2891 2935 -378 222 62 0 0 chr1 35760815 35760847 -206903506 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 453 301 160 37 chr1 35760847 35761169 -206903184 + L2 LINE L2 2935 3311 -2 2522 99 30 35 chr1 35761655 35762058 -206902295 - MSTC LTR MaLR -27 401 1 853 279 25 12 chr1 35762326 35762612 -206901741 + L1ME LINE L1 5484 5770 -351 433 281 37 15 chr1 35762632 35762767 -206901586 - MIR SINE MIR -73 189 52 560 306 86 5 chr1 35763257 35763466 -206900887 + MIR SINE MIR 31 256 -6 256 127 51 25 chr1 35763998 35764077 -206900276 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 243 219 0 39 chr1 35764132 35764287 -206900066 + (TGGA)n Simple_repeat Simple_repeat 3 151 0 297 336 123 20 chr1 35765409 35765552 -206898801 - L1MC4a LINE L1 -1899 5909 5782 2350 77 3 0 chr1 35765552 35765839 -206898514 - AluSc SINE Alu -3 306 19 297 336 123 20 chr1 35765839 35765909 -206898444 - L1MC4a LINE L1 -2026 5782 5721 342 0 0 0 chr1 35765909 35765947 -206898406 + (TG)n Simple_repeat Simple_repeat 1 38 0 297 336 123 20 chr1 35765947 35766024 -206898329 - L1MC4a LINE L1 -2087 5721 5588 664 135 38 173 chr1 35766079 35766264 -206898089 - MER5A DNA MER1_type -13 176 17 385 294 63 36 chr1 35766284 35766665 -206897688 - L1P5 LINE L1 -674 5482 5088 2210 91 56 3 chr1 35767113 35767399 -206896954 - AluSc SINE Alu -8 301 1 2184 128 3 0 chr1 35767543 35767839 -206896514 - AluSx SINE Alu -15 297 1 305 330 78 0 chr1 35768058 35768161 -206896192 + L2 LINE L2 3162 3272 0 2737 170 41 33 chr1 35768173 35768222 -206896131 - MLT2B2 LTR ERVL 0 515 468 201 39 0 0 chr1 35768222 35768248 -206896105 + (TG)n Simple_repeat Simple_repeat 2 27 0 2737 170 41 33 chr1 35768248 35768709 -206895644 - MLT2B2 LTR ERVL -47 468 1 466 245 125 8 chr1 35769859 35770069 -206894284 + MIR SINE MIR 15 252 -10 189 158 0 53 chr1 35770162 35770200 -206894153 - L2 LINE L2 -7 3306 3271 511 267 206 76 chr1 35770496 35771108 -206893245 + L2 LINE L2 2587 3312 -1 653 264 11 36 chr1 35771182 35771391 -206892962 - MIR SINE MIR -60 202 1 2435 60 0 3 chr1 35771504 35771818 -206892535 - AluY SINE Alu 0 313 1 247 319 158 24 chr1 35773596 35773969 -206890384 + L2 LINE L2 1395 1817 -1497 291 276 12 31 chr1 35774089 35774252 -206890101 + (TCTG)n Simple_repeat Simple_repeat 4 163 0 * 330 297 5 32 chr1 35774215 35774400 -206889953 + CT-rich Low_complexity Low_complexity 1 180 0 * 333 258 26 46 chr1 35774275 35774426 -206889927 + (TCTCTG)n Simple_repeat Simple_repeat 3 150 0 559 231 113 0 chr1 35774936 35775096 -206889257 - LTR16C LTR ERVL 0 491 314 405 0 0 0 chr1 35775635 35775680 -206888673 + (CA)n Simple_repeat Simple_repeat 2 46 0 370 361 8 0 chr1 35775914 35776047 -206888306 + L2 LINE L2 2924 3057 -215 195 372 26 9 chr1 35776867 35776980 -206887373 + L2 LINE L2 3196 3310 -3 267 103 0 0 chr1 35776980 35777019 -206887334 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 241 316 24 0 chr1 35777077 35777165 -206887188 + MIR SINE MIR 49 141 -67 517 277 0 0 chr1 35777220 35777332 -206887021 + MIR SINE MIR 1 112 -150 3447 161 43 55 chr1 35777335 35778136 -206886217 - MER21B LTR ERV1 0 931 40 348 271 107 8 chr1 35778162 35778284 -206886069 + MIR SINE MIR 118 251 -11 943 214 73 10 chr1 35778900 35779106 -206885247 - MER20 DNA MER1_type 0 219 1 314 260 150 10 chr1 35779452 35779552 -206884801 - MER5B DNA MER1_type -61 117 4 429 157 10 5 chr1 35779574 35779680 -206884673 + MER5A DNA MER1_type 37 189 0 631 242 26 95 chr1 35780045 35780309 -206884044 - L2 LINE L2 -2 3311 3066 2388 92 0 0 chr1 35780343 35780637 -206883716 + AluSq SINE Alu 1 294 -19 11959 218 40 42 chr1 35780719 35782954 -206881399 - L1MB2 LINE L1 -1 5994 3757 2139 131 0 16 chr1 35782954 35783259 -206881094 - AluSx SINE Alu -12 300 1 11959 218 40 42 chr1 35783259 35786481 -206877872 - L1MB2 LINE L1 -2238 3757 531 1605 196 10 10 chr1 35786481 35786772 -206877581 - AluJo SINE Alu -21 291 1 11959 218 40 42 chr1 35786772 35786867 -206877486 - L1MB2 LINE L1 -5464 531 606 234 0 0 0 chr1 35786867 35786893 -206877460 + (CAA)n Simple_repeat Simple_repeat 2 27 0 11959 218 40 42 chr1 35786893 35786969 -206877384 - L1MB2 LINE L1 -5388 607 532 950 245 47 81 chr1 35787147 35787555 -206876798 - L1MB2 LINE L1 -5497 394 1 715 79 0 0 chr1 35788149 35788238 -206876115 - 5S rRNA rRNA -31 90 2 462 36 0 0 chr1 35789149 35789205 -206875148 + (GA)n Simple_repeat Simple_repeat 1 56 0 491 272 69 39 chr1 35789445 35789677 -206874676 + MIR SINE MIR 18 256 -6 255 271 37 37 chr1 35789698 35789805 -206874548 - L2 LINE L2 -21 3251 3145 713 216 22 78 chr1 35789992 35790224 -206874129 - L2 LINE L2 -1 3312 3094 213 39 0 0 chr1 35790257 35790283 -206874070 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 5649 109 4 43 chr1 35790283 35791125 -206873228 - L1PA13 LINE L1 -9 6154 5376 2540 59 0 10 chr1 35791125 35791429 -206872924 - AluSg SINE Alu -9 301 1 5649 109 4 43 chr1 35791429 35791639 -206872714 - L1PA13 LINE L1 -787 5376 5159 378 242 81 0 chr1 35791640 35791739 -206872614 + L1P LINE L1 5002 5108 -1038 240 367 18 0 chr1 35792761 35792870 -206871483 - MIR SINE MIR -62 146 36 285 322 136 0 chr1 35793121 35793239 -206871114 - L2 LINE L2 0 3313 3180 215 125 25 0 chr1 35793528 35793568 -206870785 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 1084 241 20 4 chr1 35793575 35793828 -206870525 + MIR SINE MIR 6 262 0 331 301 17 9 chr1 35794661 35794801 -206869552 + MIR3 SINE MIR 16 156 -52 232 250 0 0 chr1 35795000 35795052 -206869301 + L2 LINE L2 3133 3184 -88 1786 188 100 11 chr1 35795182 35795634 -206868719 + Charlie4a DNA MER1_type 15 506 -2 1374 124 48 0 chr1 35795783 35795992 -206868361 + MER20 DNA MER1_type 1 219 0 181 228 123 61 chr1 35796148 35796262 -206868091 - L2 LINE L2 -202 3070 2950 381 278 8 15 chr1 35796614 35796747 -206867606 + L2 LINE L2 2228 2359 -955 448 321 21 8 chr1 35796817 35797057 -206867296 + L1ME4a LINE L1 4193 4435 -1711 513 259 109 43 chr1 35797107 35797333 -206867020 - MIR SINE MIR -22 240 8 461 126 0 81 chr1 35797389 35797476 -206866877 + MADE1 DNA Mariner 1 80 0 284 247 49 0 chr1 35797501 35797582 -206866771 - L2 LINE L2 0 3272 3188 2352 88 10 0 chr1 35797592 35797897 -206866456 + AluY SINE Alu 1 308 -3 666 297 106 11 chr1 35798136 35798486 -206865867 - L2 LINE L2 0 3313 2931 437 276 15 0 chr1 35798621 35798755 -206865598 - L2 LINE L2 -431 2883 2748 2435 75 0 0 chr1 35798857 35799150 -206865203 + AluY SINE Alu 1 293 -18 582 331 38 26 chr1 35799471 35799818 -206864535 + L1ME4a LINE L1 5314 5664 -457 599 251 11 17 chr1 35800412 35800587 -206863766 + L1ME4a LINE L1 5707 5880 -241 * 673 261 34 14 chr1 35800575 35800815 -206863538 + L1MC4a LINE L1 5695 5946 -356 272 246 251 23 chr1 35801028 35801199 -206863154 + L1ME4a LINE L1 5880 6089 -32 206 241 342 0 chr1 35801314 35801393 -206862960 - L2 LINE L2 0 3313 3208 276 305 0 30 chr1 35802332 35802496 -206861857 - L1M4 LINE L1 -1073 5073 4915 43923 32 21 1 chr1 35802727 35808792 -206855561 - L1PA2 LINE L1 0 6155 1 598 294 111 45 chr1 35808804 35809542 -206854811 - L1M4 LINE L1 -1487 4659 3873 731 268 75 13 chr1 35809662 35809890 -206854463 + MIR SINE MIR 8 249 -13 230 328 16 41 chr1 35809897 35810019 -206854334 - L2 LINE L2 -15 3298 3180 314 250 187 55 chr1 35810171 35810551 -206853802 - L2 LINE L2 -342 2972 2543 262 271 187 13 chr1 35810880 35811035 -206853318 + MER5A DNA MER1_type 1 182 -7 342 326 134 13 chr1 35811051 35811646 -206852707 - L2 LINE L2 -1309 2005 1339 208 255 61 51 chr1 35811741 35811839 -206852514 + MIR SINE MIR 159 257 -5 746 207 116 74 chr1 35813325 35813529 -206850824 - L2 LINE L2 -2 3311 3117 414 0 0 0 chr1 35813529 35813575 -206850778 + (TTA)n Simple_repeat Simple_repeat 3 48 0 2704 43 9 0 chr1 35813575 35813902 -206850451 - L1PA7 LINE L1 -18 6136 5807 746 207 116 74 chr1 35813902 35814059 -206850294 - L2 LINE L2 -195 3118 2934 1270 266 120 30 chr1 35814232 35814897 -206849456 - L2 LINE L2 -421 2893 2169 189 107 0 0 chr1 35815139 35815167 -206849186 + (T)n Simple_repeat Simple_repeat 1 28 0 7669 29 10 0 chr1 35815774 35816854 -206847499 - L1PA4 LINE L1 0 6155 5093 461 285 58 29 chr1 35817231 35817294 -206847059 - MIR SINE MIR -3 259 199 1463 192 0 11 chr1 35817294 35817554 -206846799 - AluJb SINE Alu -55 257 1 461 285 58 29 chr1 35817554 35817697 -206846656 - MIR SINE MIR -63 199 47 259 330 113 5 chr1 35817899 35818084 -206846269 + L2 LINE L2 1612 1816 -1498 8421 55 18 202 chr1 35818096 35819794 -206844559 - SVA Other Other 0 1386 1 936 292 146 56 chr1 35819993 35820210 -206844143 - L1M4 LINE L1 -2660 3486 3290 504 0 0 0 chr1 35820210 35820266 -206844087 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 936 292 146 56 chr1 35820266 35821293 -206843060 - L1M4 LINE L1 -2856 3290 2130 1539 181 139 16 chr1 35821691 35822066 -206842287 - L1M4 LINE L1 -1726 4420 4000 294 265 137 0 chr1 35822536 35822638 -206841715 + MIR SINE MIR 63 178 -84 200 163 23 23 chr1 35822862 35822905 -206841448 + (TATG)n Simple_repeat Simple_repeat 2 44 0 722 206 0 22 chr1 35823051 35823187 -206841166 + FLAM_A SINE Alu 1 133 0 757 218 24 6 chr1 35823245 35823415 -206840938 - L1PB4 LINE L1 -3 6153 5981 2342 58 0 4 chr1 35823423 35823699 -206840654 - AluY SINE Alu -2 309 35 2420 64 0 3 chr1 35823709 35824005 -206840348 - AluY SINE Alu -8 303 9 261 0 0 0 chr1 35824230 35824259 -206840094 + (TA)n Simple_repeat Simple_repeat 1 29 0 247 292 93 25 chr1 35824328 35824489 -206839864 + MIR SINE MIR 41 212 -50 1161 197 0 18 chr1 35824596 35824819 -206839534 + MER20 DNA MER1_type 1 219 0 291 247 103 10 chr1 35824856 35824953 -206839400 + MIR SINE MIR 41 146 -116 240 236 195 49 chr1 35826075 35826198 -206838155 - L2 LINE L2 -4 3309 3169 515 301 44 82 chr1 35826229 35826442 -206837911 + L2 LINE L2 2921 3116 -156 180 0 0 0 chr1 35826442 35826462 -206837891 + (TG)n Simple_repeat Simple_repeat 2 21 0 515 301 44 82 chr1 35826462 35826614 -206837739 + L2 LINE L2 3116 3272 0 2740 138 19 0 chr1 35826992 35827412 -206836941 + MSTA LTR MaLR 1 428 0 262 225 127 0 chr1 35827671 35827742 -206836611 - L1ME4a LINE L1 -97 6024 5945 436 122 95 0 chr1 35829030 35829104 -206835249 - HERV9 LTR ERV1 -4140 4259 4179 521 265 22 27 chr1 35829109 35829294 -206835059 + MIR3 SINE MIR 23 206 -2 693 198 213 92 chr1 35829440 35829778 -206834575 + MLT1J1 LTR MaLR 1 379 -67 217 267 56 11 chr1 35830622 35830712 -206833641 - MIR SINE MIR -63 199 106 291 251 105 27 chr1 35831599 35831737 -206832616 + MIR SINE MIR 18 170 -38 331 301 9 9 chr1 35831847 35831960 -206832393 + L2 LINE L2 3160 3272 0 2225 101 58 23 chr1 35832159 35832505 -206831848 - THE1B LTR MaLR -2 362 5 322 240 158 36 chr1 35832592 35832813 -206831540 + L1ME4a LINE L1 5868 6115 -6 356 274 75 7 chr1 35832891 35833037 -206831316 + L3 LINE CR1 1101 1256 -321 264 233 50 0 chr1 35833574 35833634 -206830719 - MER5A DNA MER1_type -109 80 18 402 264 111 46 chr1 35835011 35835227 -206829126 - MIR SINE MIR -32 230 1 606 270 29 21 chr1 35835453 35835691 -206828662 - MIR SINE MIR -13 249 4 2485 115 3 8 chr1 35836085 35836442 -206827911 + THE1A LTR MaLR 1 355 0 11178 96 28 7 chr1 35836442 35837989 -206826364 + THE1A-int LTR MaLR 1 1580 0 2606 91 8 3 chr1 35837989 35838342 -206826011 + THE1A LTR MaLR 1 355 0 853 209 143 33 chr1 35839470 35839680 -206824673 - MIR SINE MIR -2 260 28 340 157 96 12 chr1 35839736 35839819 -206824534 + THE1-int LTR MaLR 667 756 -824 533 226 110 18 chr1 35839934 35840098 -206824255 - MER20 DNA MER1_type -4 215 37 203 161 0 0 chr1 35840511 35840542 -206823811 + A-rich Low_complexity Low_complexity 5 35 0 246 250 39 29 chr1 35840780 35840884 -206823469 - L1ME4a LINE L1 -22 6099 5995 291 93 0 0 chr1 35841438 35841481 -206822872 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 196 211 0 0 chr1 35841483 35841521 -206822832 - L2 LINE L2 -14 3258 3221 242 284 236 39 chr1 35841581 35841891 -206822462 - L2 LINE L2 -56 3257 2887 207 0 0 0 chr1 35842783 35842806 -206821547 + (CAT)n Simple_repeat Simple_repeat 2 24 0 731 282 21 0 chr1 35842807 35842995 -206821358 - MIR SINE MIR -18 244 53 993 279 29 10 chr1 35844148 35844456 -206819897 + LTR16C LTR ERVL 169 482 -9 875 265 56 20 chr1 35844498 35844747 -206819606 - MIR SINE MIR -3 259 2 526 297 82 58 chr1 35844756 35845086 -206819267 - L2 LINE L2 -14 3258 2921 4660 197 20 15 chr1 35845134 35845982 -206818371 + MER21B LTR ERV1 1 852 -11 2124 55 0 71 chr1 35846438 35846749 -206817604 - AluY SINE Alu -22 289 1 1440 191 7 5 chr1 35846930 35847224 -206817129 + L1MD3 LINE L1 7523 7995 0 514 286 203 9 chr1 35847236 35847463 -206816890 - L3 LINE CR1 -941 636 366 300 328 94 29 chr1 35848134 35848378 -206815975 + L2 LINE L2 1747 2006 -1308 558 221 0 93 chr1 35848394 35848566 -206815787 - L2 LINE L2 0 3313 3158 313 129 0 32 chr1 35848570 35848632 -206815721 - MLT2B1 LTR ERVL 0 520 461 315 0 0 0 chr1 35848658 35848693 -206815660 + (CA)n Simple_repeat Simple_repeat 2 36 0 1001 172 26 21 chr1 35848699 35848891 -206815462 + MER2 DNA MER2_type 18 210 -135 39 0 0 0 chr1 35848891 35848930 -206815423 + AT_rich Low_complexity Low_complexity 1 39 0 238 209 0 0 chr1 35848930 35848973 -206815380 + MER2 DNA MER2_type 280 322 -23 308 24 0 24 chr1 35848978 35849020 -206815333 + (TG)n Simple_repeat Simple_repeat 2 42 0 1198 184 82 48 chr1 35849030 35849390 -206814963 - MLT2B1 LTR ERVL -57 357 1 4261 140 72 78 chr1 35849390 35850277 -206814076 - ERVL-B1 LTR ERVL -7 5757 4876 4423 156 7 4 chr1 35850316 35851009 -206813344 - ERVL-B1 LTR ERVL -784 4980 4286 1385 191 81 45 chr1 35851028 35851385 -206812968 - MLT1A2 LTR MaLR 0 374 5 190 195 24 0 chr1 35851398 35851439 -206812914 - L2 LINE L2 -168 3145 3104 1504 230 40 50 chr1 35853555 35854334 -206810019 - L2 LINE L2 -31 3282 2521 300 331 58 8 chr1 35854336 35854457 -206809896 + L2 LINE L2 3185 3311 -2 2491 210 57 18 chr1 35854688 35855249 -206809104 - MER119 DNA MER1_type 0 583 1 353 22 22 0 chr1 35856110 35856156 -206808197 + (TG)n Simple_repeat Simple_repeat 1 47 0 228 204 0 0 chr1 35856899 35856943 -206807410 - MER103 DNA DNA -121 45 2 2675 199 47 9 chr1 35857022 35857559 -206806794 - MER68 LTR ERV1 0 562 6 310 327 32 121 chr1 35857602 35857975 -206806378 - L2 LINE L2 -50 3222 2883 906 93 0 0 chr1 35857975 35858093 -206806260 + AluY SINE Alu 15 132 -179 1901 104 10 14 chr1 35858096 35858384 -206805969 + AluY SINE Alu 1 287 -24 190 261 34 11 chr1 35858386 35858474 -206805879 - L2 LINE L2 -423 2891 2802 234 321 82 37 chr1 35859283 35859526 -206804827 - L3 LINE CR1 -157 1420 1167 22 0 0 0 chr1 35860018 35860040 -206804313 + AT_rich Low_complexity Low_complexity 1 22 0 1793 173 0 0 chr1 35860046 35860341 -206804012 - AluJo SINE Alu -17 295 1 199 257 40 95 chr1 35860622 35860770 -206803583 - L2 LINE L2 -62 3251 3112 913 291 62 31 chr1 35860778 35860809 -206803544 - MLT1I LTR MaLR -2 407 378 1924 189 94 70 chr1 35860809 35860966 -206803387 + MER74A LTR ERVL 1 153 -405 1569 144 0 109 chr1 35860966 35861314 -206803039 - AluJb SINE Alu -2 310 1 1924 189 94 70 chr1 35861314 35861701 -206802652 + MER74A LTR ERVL 153 558 0 913 291 62 31 chr1 35861701 35862058 -206802295 - MLT1I LTR MaLR -31 378 7 220 333 83 49 chr1 35862094 35862298 -206802055 - L2 LINE L2 -251 3062 2852 694 179 86 19 chr1 35862305 35862467 -206801886 - MER97b DNA MER1_type? -874 179 7 275 333 40 16 chr1 35862501 35862627 -206801726 - L2 LINE L2 -464 2850 2722 258 182 0 0 chr1 35864004 35864048 -206800305 - Charlie5 DNA MER1_type -29 2583 2540 1112 241 48 16 chr1 35864071 35864386 -206799967 - LTR47B LTR ERVL -85 358 34 4248 197 102 20 chr1 35864393 35865359 -206798994 - L1MD2 LINE L1 -9 6350 5305 2553 236 28 31 chr1 35865361 35866141 -206798212 - L1MD2 LINE L1 -2056 4090 3313 439 301 112 25 chr1 35866242 35866438 -206797915 - L1M4 LINE L1 -812 5334 5122 439 290 51 99 chr1 35866459 35866752 -206797601 - MLT1K LTR MaLR 0 588 310 583 222 97 36 chr1 35867696 35867944 -206796409 + HAL1b LINE L1 961 1223 -125 204 327 0 0 chr1 35868372 35868427 -206795926 + L2 LINE L2 3211 3265 -7 207 0 0 0 chr1 35869396 35869419 -206794934 + (T)n Simple_repeat Simple_repeat 1 23 0 1672 143 92 0 chr1 35869822 35870095 -206794258 + AluSx SINE Alu 1 298 -14 1061 168 30 25 chr1 35870707 35870910 -206793443 + MER58A DNA MER1_type 21 224 0 1216 184 10 0 chr1 35870918 35871125 -206793228 - MER3 DNA MER1_type 0 209 1 248 184 20 0 chr1 35871801 35871850 -206792503 + MIR SINE MIR 73 122 -140 448 248 135 8 chr1 35872400 35872533 -206791820 - MIR SINE MIR -7 255 106 273 158 50 129 chr1 35872738 35872839 -206791514 - MER53 DNA DNA 0 189 97 1626 174 16 7 chr1 35872844 35873148 -206791205 - AluJb SINE Alu -5 307 1 315 196 0 0 chr1 35873148 35873204 -206791149 - MER53 DNA DNA -133 56 1 746 293 138 41 chr1 35873529 35874021 -206790332 - L1ME LINE L1 -324 5797 5258 834 290 24 28 chr1 35874875 35875130 -206789223 + MIR SINE MIR 4 257 -5 205 256 0 0 chr1 35875563 35875606 -206788747 + (CA)n Simple_repeat Simple_repeat 2 44 0 199 238 0 0 chr1 35875728 35875770 -206788583 - L2 LINE L2 -1 3312 3271 185 0 40 0 chr1 35876891 35876916 -206787437 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 335 292 52 0 chr1 35876916 35877012 -206787341 - L2 LINE L2 -13 3259 3159 509 340 52 0 chr1 35877039 35877230 -206787123 + MIR SINE MIR 19 219 -43 370 362 82 5 chr1 35877290 35877486 -206786867 + MIR SINE MIR 38 248 -14 180 323 20 50 chr1 35877573 35877672 -206786681 + L2 LINE L2 3156 3251 -21 1648 184 0 14 chr1 35878034 35878328 -206786025 + AluJb SINE Alu 4 293 -19 1020 61 0 0 chr1 35878489 35878620 -206785733 - AluY SINE Alu -179 132 2 1388 117 80 0 chr1 35878635 35878874 -206785479 - Tigger3(Golem) DNA MER2_type -285 2744 2487 1874 121 0 8 chr1 35878890 35879155 -206785198 - AluSq SINE Alu -50 263 1 242 131 66 0 chr1 35879200 35879261 -206785092 - L1MA9 LINE L1 -13 6299 6235 425 156 0 0 chr1 35880402 35880466 -206783887 + AluJ/FLAM SINE Alu 3 66 -246 658 277 89 30 chr1 35880843 35881078 -206783275 + MIR SINE MIR 2 250 -12 314 258 0 0 chr1 35881112 35881174 -206783179 + L2 LINE L2 3252 3313 0 999 182 0 6 chr1 35881246 35881427 -206782926 - MER104 DNA MER2_type 0 180 1 478 346 77 13 chr1 35882441 35882675 -206781678 - MIR SINE MIR -6 256 8 925 260 146 41 chr1 35883029 35883391 -206780962 + L2 LINE L2 2913 3312 -1 399 266 106 35 chr1 35883393 35883619 -206780734 - L2 LINE L2 -374 2940 2699 212 318 45 23 chr1 35883981 35884113 -206780240 + L3 LINE CR1 649 783 -794 * 1084 195 70 0 chr1 35884091 35884306 -206780047 - MIR SINE MIR 0 262 33 1243 283 81 21 chr1 35884562 35885258 -206779095 + L1ME4a LINE L1 5308 6045 -76 1642 179 28 10 chr1 35885529 35885820 -206778533 - AluJo SINE Alu -16 296 1 552 291 92 31 chr1 35885930 35886191 -206778162 + L3 LINE CR1 1218 1494 -83 640 226 14 0 chr1 35886223 35886369 -206777984 - MER104 DNA Tc2 -4 176 29 204 40 0 0 chr1 35886482 35886507 -206777846 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr1 35886541 35886562 -206777791 + AT_rich Low_complexity Low_complexity 1 21 0 1782 38 0 0 chr1 35886563 35886772 -206777581 - L1PA8 LINE L1 -397 5775 5567 2950 60 5 5 chr1 35886772 35887151 -206777202 + L1PA8 LINE L1 5782 6164 -8 24 85 0 0 chr1 35887165 35887224 -206777129 + AT_rich Low_complexity Low_complexity 1 59 0 330 26 0 0 chr1 35887242 35887281 -206777072 + (CA)n Simple_repeat Simple_repeat 2 40 0 205 352 0 0 chr1 35887442 35887513 -206776840 + L3 LINE CR1 1506 1576 -1 268 232 222 20 chr1 35887901 35888000 -206776353 + MIR SINE MIR 30 148 -114 2021 295 103 14 chr1 35888595 35889530 -206774823 - L2 LINE L2 -91 3181 2154 194 250 92 26 chr1 35889774 35889850 -206774503 + L2 LINE L2 3192 3272 0 672 204 0 59 chr1 35890496 35890648 -206773705 - L2 LINE L2 -1 3312 3170 1406 136 20 0 chr1 35890649 35890848 -206773505 + AluSg/x SINE Alu 95 297 -13 651 262 110 12 chr1 35890848 35891176 -206773177 - L2 LINE L2 -135 3178 2819 334 322 79 13 chr1 35891193 35891345 -206773008 - MIR3 SINE MIR -13 195 34 2011 114 29 3 chr1 35891394 35891710 -206772643 + L1MA2 LINE L1 5981 6304 0 404 279 57 77 chr1 35892085 35892332 -206772021 - L2 LINE L2 -46 3226 2985 2581 57 0 22 chr1 35892370 35892687 -206771666 + AluY SINE Alu 1 310 -1 644 248 89 25 chr1 35892725 35892927 -206771426 + MIR SINE MIR 47 261 -1 248 239 15 85 chr1 35892981 35893111 -206771242 - L2 LINE L2 -228 3044 2924 665 357 32 22 chr1 35893157 35893527 -206770826 - L2 LINE L2 -468 2846 2473 664 192 45 45 chr1 35894410 35894566 -206769787 - L2 LINE L2 0 3313 3158 262 281 21 52 chr1 35894706 35894802 -206769551 - L3 LINE CR1 -932 645 553 264 343 22 72 chr1 35894899 35895081 -206769272 + MIR SINE MIR 20 191 -63 314 229 58 8 chr1 35895384 35895518 -206768835 - L1ME4a LINE L1 -14 6097 1196 652 257 165 15 chr1 35895561 35895822 -206768531 - L1ME LINE L1 -338 5783 5484 371 343 88 6 chr1 35897204 35897385 -206766968 + MER117 DNA MER1_type 2 197 0 330 261 124 52 chr1 35898930 35899083 -206765270 - MLT1K LTR MaLR -30 558 395 271 268 14 0 chr1 35899720 35899791 -206764562 + MIR SINE MIR 191 262 0 200 204 23 0 chr1 35900124 35900168 -206764185 + GA-rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr1 35900434 35900457 -206763896 + AT_rich Low_complexity Low_complexity 1 23 0 344 264 104 49 chr1 35900712 35900856 -206763497 - MIR SINE MIR -7 255 104 1403 276 85 35 chr1 35900971 35901773 -206762580 - HAL1b LINE L1 -1 1347 506 421 296 144 11 chr1 35901819 35902103 -206762250 - HAL1b LINE L1 -932 416 95 646 222 0 11 chr1 35902200 35902380 -206761973 + CT-rich Low_complexity Low_complexity 3 180 0 358 312 16 70 chr1 35903326 35903512 -206760841 - L1MC4a LINE L1 -1955 5853 5678 216 218 39 90 chr1 35903515 35903593 -206760760 - MIR SINE MIR -113 149 76 1737 184 13 19 chr1 35903597 35903906 -206760447 + AluJo SINE Alu 1 307 -5 842 213 29 11 chr1 35904431 35904605 -206759748 + MER45A DNA AcHobo 1 177 -1 2349 147 16 54 chr1 35904873 35905316 -206759037 - MSTC LTR MaLR -2 426 1 371 286 286 0 chr1 35906205 35906408 -206757945 + MIR SINE MIR 2 262 0 250 248 9 9 chr1 35906435 35906540 -206757813 + CT-rich Low_complexity Low_complexity 3 107 0 408 197 31 72 chr1 35907087 35907311 -206757042 - L1ME LINE L1 -743 5403 5201 2343 112 0 0 chr1 35908200 35908505 -206755848 - AluSc SINE Alu -2 307 3 393 370 0 8 chr1 35908669 35908796 -206755557 - L2 LINE L2 -13 3259 3134 204 315 74 39 chr1 35909036 35909239 -206755114 + L2 LINE L2 2483 2692 -622 24 53 0 0 chr1 35909966 35910004 -206754349 + AT_rich Low_complexity Low_complexity 1 38 0 287 181 14 0 chr1 35910169 35910241 -206754112 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 2411 78 0 29 chr1 35910396 35910705 -206753648 - AluY SINE Alu -11 300 1 23 0 0 0 chr1 35910915 35910938 -206753415 + AT_rich Low_complexity Low_complexity 1 23 0 200 204 23 0 chr1 35911204 35911248 -206753105 + CT-rich Low_complexity Low_complexity 1 45 0 271 268 14 0 chr1 35911581 35911652 -206752701 - MIR SINE MIR 0 262 191 330 261 124 52 chr1 35912289 35912442 -206751911 + MLT1K LTR MaLR 395 558 -30 371 337 88 6 chr1 35913991 35914172 -206750181 - MER117 DNA MER1_type 0 197 2 652 257 165 15 chr1 35915554 35915815 -206748538 + L1ME LINE L1 5484 5783 -338 314 229 58 8 chr1 35915858 35915992 -206748361 + L1ME4a LINE L1 1196 6097 -14 245 348 22 72 chr1 35916295 35916477 -206747876 - MIR SINE MIR -63 145 20 262 281 21 52 chr1 35916574 35916670 -206747683 + L3 LINE CR1 553 645 -932 664 192 45 45 chr1 35916810 35916966 -206747387 + L2 LINE L2 3158 3313 0 671 336 21 21 chr1 35917849 35918135 -206746218 + L2 LINE L2 2473 2758 -556 248 239 15 85 chr1 35918265 35918395 -206745958 + L2 LINE L2 2924 3044 -228 644 248 89 25 chr1 35918449 35918651 -206745702 - MIR SINE MIR -1 261 47 2581 57 0 22 chr1 35918689 35919006 -206745347 - AluY SINE Alu -1 310 1 404 279 57 77 chr1 35919044 35919291 -206745062 + L2 LINE L2 2985 3226 -46 2011 114 29 3 chr1 35919666 35919982 -206744371 - L1MA2 LINE L1 0 6304 5981 334 322 79 13 chr1 35920031 35920183 -206744170 + MIR3 SINE MIR 34 195 -13 651 262 110 12 chr1 35920200 35920528 -206743825 + L2 LINE L2 2819 3178 -135 1406 136 20 0 chr1 35920528 35920727 -206743626 - AluSg/x SINE Alu -13 299 97 672 204 0 59 chr1 35920728 35920880 -206743473 + L2 LINE L2 3170 3312 -1 1177 116 79 112 chr1 35921165 35921406 -206742947 + AluJb SINE Alu 1 233 -79 515 257 84 59 chr1 35921433 35921913 -206742440 - L1ME LINE L1 -488 5682 5188 215 180 160 0 chr1 35921919 35921969 -206742384 - MIR SINE MIR -118 144 87 1723 158 46 3 chr1 35922387 35922671 -206741682 + AluJo SINE Alu 11 306 -6 525 162 17 117 chr1 35922673 35922852 -206741501 + MER53 DNA DNA 29 189 0 1950 108 0 4 chr1 35923402 35923660 -206740693 - AluSq SINE Alu -21 292 36 3086 218 57 38 chr1 35923674 35924554 -206739799 - L1ME1 LINE L1 -4 6162 5266 22 70 0 0 chr1 35924559 35924602 -206739751 + AT_rich Low_complexity Low_complexity 1 43 0 357 24 0 0 chr1 35924614 35924656 -206739697 + (TA)n Simple_repeat Simple_repeat 2 43 0 783 228 10 25 chr1 35924666 35924868 -206739485 - L1ME1 LINE L1 -1054 5092 4894 547 339 111 14 chr1 35924947 35925236 -206739117 - L2 LINE L2 -1 3312 2996 312 204 23 68 chr1 35925479 35925567 -206738786 - L2 LINE L2 0 3313 3230 333 311 79 57 chr1 35925788 35926103 -206738250 - L2 LINE L2 -819 2495 2174 616 292 94 9 chr1 35926158 35926391 -206737962 + MIR SINE MIR 4 256 -6 266 291 0 13 chr1 35926450 35926529 -206737824 - MIR SINE MIR -156 106 29 418 245 129 17 chr1 35927121 35927274 -206737079 + MIR SINE MIR 20 185 -63 223 283 57 107 chr1 35927557 35927734 -206736619 - L2 LINE L2 -30 3242 3075 374 272 0 22 chr1 35928033 35928125 -206736228 - MIR SINE MIR -139 123 34 502 112 10 10 chr1 35928768 35928866 -206735487 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 1504 196 68 0 chr1 35928870 35929151 -206735202 - AluJo SINE Alu -10 302 3 408 232 11 0 chr1 35929237 35929332 -206735021 + MER5A DNA MER1_type 14 109 -80 328 289 62 10 chr1 35929383 35929480 -206734873 - MER5A DNA MER1_type -14 175 74 2190 97 0 29 chr1 35929489 35929799 -206734554 - AluSx SINE Alu -11 301 1 237 215 77 0 chr1 35930451 35930516 -206733837 + L2 LINE L2 2597 2666 -648 222 304 68 42 chr1 35930816 35931007 -206733346 + L2 LINE L2 2804 2999 -273 493 269 25 118 chr1 35931056 35931335 -206733018 - MIR SINE MIR -9 253 1 328 300 125 46 chr1 35931385 35931665 -206732688 + L2 LINE L2 2359 2660 -654 548 335 61 51 chr1 35931729 35932120 -206732233 + L2 LINE L2 2877 3271 -1 302 231 13 26 chr1 35932121 35932199 -206732154 + MIR SINE MIR 169 245 -17 394 311 273 19 chr1 35932671 35933041 -206731312 + L2 LINE L2 2850 3313 0 196 345 0 0 chr1 35933217 35933275 -206731078 + MIR SINE MIR 35 92 -116 272 258 34 34 chr1 35933393 35933482 -206730871 + MIR3 SINE MIR 117 205 -3 709 212 12 5 chr1 35933738 35933908 -206730445 - MIR SINE MIR 0 262 5 209 180 49 0 chr1 35933924 35933985 -206730368 + (CA)n Simple_repeat Simple_repeat 1 64 0 915 222 19 49 chr1 35934636 35934870 -206729483 + MIR SINE MIR 34 262 0 571 292 128 44 chr1 35934955 35935338 -206729015 + L2 LINE L2 2857 3271 -1 802 279 48 0 chr1 35935444 35935673 -206728680 + MIR SINE MIR 16 255 -7 419 278 142 11 chr1 35936782 35936958 -206727395 - MIR SINE MIR -3 259 61 243 0 0 0 chr1 35938156 35938183 -206726170 + (TG)n Simple_repeat Simple_repeat 2 28 0 349 250 250 0 chr1 35938238 35938354 -206725999 - L2 LINE L2 0 3313 3169 445 256 29 36 chr1 35939055 35939192 -206725161 + MIR SINE MIR 65 200 -62 212 337 67 0 chr1 35939195 35939284 -206725069 + L2 LINE L2 3187 3281 -32 233 288 68 25 chr1 35940135 35940253 -206724100 + L2 LINE L2 3150 3272 0 216 304 52 34 chr1 35940596 35940744 -206723609 + MIR SINE MIR 31 187 -21 185 300 83 0 chr1 35940692 35940752 -206723601 + L3b LINE CR1 1207 1271 -312 * 2443 175 64 25 chr1 35940832 35941318 -206723035 - MLT1D LTR MaLR 0 505 1 678 204 79 7 chr1 35942621 35942773 -206721580 - MIR SINE MIR -12 250 88 342 307 19 14 chr1 35942787 35942911 -206721442 + MIR SINE MIR 3 124 -84 252 86 0 0 chr1 35943442 35943477 -206720876 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 2341 90 23 0 chr1 35943538 35943839 -206720514 - AluSp SINE Alu -5 308 1 180 111 0 0 chr1 35943906 35943933 -206720420 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 776 298 34 4 chr1 35943947 35944182 -206720171 + MIR SINE MIR 8 249 -13 240 111 0 0 chr1 35944198 35944234 -206720119 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 920 203 60 49 chr1 35944234 35944500 -206719853 - MER33 DNA MER1_type -2 322 54 181 363 44 0 chr1 35944516 35944607 -206719746 + L2 LINE L2 2127 2221 -1093 1441 248 115 14 chr1 35944847 35945360 -206718993 - MLT1E LTR MaLR -27 566 2 198 258 81 0 chr1 35947716 35947778 -206716575 + L2 LINE L2 3137 3203 -69 711 241 47 6 chr1 35947832 35948002 -206716351 + MER45A DNA AcHobo 1 177 -1 516 316 30 37 chr1 35948673 35948916 -206715437 - MIR SINE MIR -14 248 3 251 330 11 21 chr1 35949195 35949289 -206715064 - L2 LINE L2 -1 3271 3179 854 222 108 19 chr1 35949296 35949508 -206714845 - MIR SINE MIR -19 243 13 245 294 0 0 chr1 35949549 35949617 -206714736 + MER5B DNA MER1_type 1 68 -110 2122 214 24 50 chr1 35949620 35950238 -206714115 + L1ME1 LINE L1 5521 6122 -44 602 216 32 0 chr1 35950299 35950424 -206713929 + MER5B DNA MER1_type 44 172 -6 1044 226 229 16 chr1 35950651 35951132 -206713221 - L2 LINE L2 0 3313 2725 308 233 0 23 chr1 35951613 35951699 -206712654 - MIR SINE MIR -12 250 167 1839 172 49 0 chr1 35951715 35952063 -206712290 - MSTB1 LTR MaLR 0 432 68 324 242 150 17 chr1 35952077 35952197 -206712156 - MIR SINE MIR -113 149 14 363 298 113 13 chr1 35953068 35953219 -206711134 + L2 LINE L2 3101 3266 -6 486 290 152 40 chr1 35953718 35954065 -206710288 - L2 LINE L2 -59 3254 2838 502 220 18 9 chr1 35954065 35954174 -206710179 + MER81 DNA DNA 2 111 -3 486 290 152 40 chr1 35954174 35954286 -206710067 - L2 LINE L2 -475 2838 2740 258 278 122 11 chr1 35954305 35954395 -206709958 - L2 LINE L2 -25 3247 3148 1446 219 68 15 chr1 35954767 35955332 -206709021 - MLT1E1 LTR MaLR 0 654 1 694 216 8 0 chr1 35955345 35955479 -206708874 - MIR SINE MIR -50 212 78 273 163 0 0 chr1 35955690 35955739 -206708614 + (CA)n Simple_repeat Simple_repeat 2 50 0 1097 291 102 16 chr1 35956361 35957108 -206707245 - L2 LINE L2 -5 3308 2413 1580 150 7 4 chr1 35957175 35957448 -206706905 + L1MB3 LINE L1 5830 6103 -80 346 20 41 0 chr1 35957448 35957497 -206706856 - L1PA6 LINE L1 0 6154 6104 476 101 79 0 chr1 35957497 35957578 -206706775 + L1MB3 LINE L1 6088 6183 0 225 94 0 0 chr1 35957903 35957935 -206706418 + (ATG)n Simple_repeat Simple_repeat 2 33 0 498 279 89 47 chr1 35957975 35958165 -206706188 - MIR SINE MIR -45 217 20 2733 147 12 20 chr1 35958669 35959160 -206705193 - L1MB3 LINE L1 -2 6181 5695 460 235 46 65 chr1 35959384 35959537 -206704816 + MIR SINE MIR 50 199 -63 * 511 261 42 0 chr1 35959534 35959676 -206704677 - MIR SINE MIR -27 235 88 640 261 196 16 chr1 35960342 35960664 -206703689 - MLT1J2 LTR MaLR -69 381 2 186 167 0 0 chr1 35960795 35960831 -206703522 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 695 282 25 86 chr1 35960835 35960950 -206703403 - L2 LINE L2 -2 3311 3191 312 70 0 0 chr1 35960950 35960993 -206703360 + (TG)n Simple_repeat Simple_repeat 2 44 0 695 282 25 86 chr1 35960993 35961317 -206703036 - L2 LINE L2 -122 3191 2899 187 267 53 27 chr1 35961519 35961594 -206702759 + L2 LINE L2 2106 2182 -1132 304 239 115 46 chr1 35961668 35961886 -206702467 - L2 LINE L2 -222 3050 2818 365 0 22 0 chr1 35963240 35963285 -206701068 + (TC)n Simple_repeat Simple_repeat 2 47 0 356 298 209 41 chr1 35963289 35963873 -206700480 - L2 LINE L2 -410 2904 2223 768 259 64 32 chr1 35964418 35964669 -206699684 - MIR SINE MIR 0 262 4 583 316 46 0 chr1 35965660 35965834 -206698519 + MIR SINE MIR 11 192 -70 2212 99 0 51 chr1 35966734 35967048 -206697305 + AluSx SINE Alu 1 298 -14 325 230 126 15 chr1 35967478 35967613 -206696740 + MER103 DNA DNA 8 157 -9 799 208 33 0 chr1 35968292 35968475 -206695878 + MER53 DNA DNA 1 189 0 514 310 127 0 chr1 35968809 35969022 -206695331 + MIR SINE MIR 5 244 -18 725 241 157 5 chr1 35969499 35969690 -206694663 + MER58A DNA MER1_type 4 223 -1 288 0 0 0 chr1 35969707 35969739 -206694614 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr1 35969746 35969773 -206694580 + AT_rich Low_complexity Low_complexity 1 27 0 239 307 107 60 chr1 35969787 35969937 -206694416 - L2 LINE L2 -1 3271 3115 220 270 165 26 chr1 35970252 35970367 -206693986 - L2 LINE L2 -210 3062 2932 215 306 137 33 chr1 35970568 35970751 -206693602 - L2 LINE L2 -526 2788 2587 273 291 185 26 chr1 35970942 35971093 -206693260 + MER5B DNA MER1_type 2 176 -2 430 256 43 43 chr1 35971418 35971582 -206692771 + MIR SINE MIR 34 197 -65 * 485 303 7 26 chr1 35971580 35971735 -206692618 - L2 LINE L2 0 3313 3162 26 74 0 0 chr1 35971795 35971849 -206692504 + AT_rich Low_complexity Low_complexity 1 54 0 227 116 23 0 chr1 35971858 35971901 -206692452 - L2 LINE L2 -1494 1820 1777 233 292 90 0 chr1 35971987 35972076 -206692277 + MIR SINE MIR 166 262 0 478 244 43 90 chr1 35972991 35973225 -206691128 + MIR SINE MIR 21 243 -19 271 262 143 77 chr1 35973248 35973268 -206691085 - MIR SINE MIR -74 188 171 2173 164 63 14 chr1 35973268 35973713 -206690640 + MLT1C LTR MaLR 1 467 0 271 262 143 77 chr1 35973713 35973860 -206690493 - MIR SINE MIR -91 171 10 229 196 39 0 chr1 35975582 35975633 -206688720 + L2 LINE L2 3261 3313 0 286 219 68 0 chr1 35975689 35975762 -206688591 - L2 LINE L2 -31 3282 3205 551 256 115 47 chr1 35975793 35976027 -206688326 - MIR SINE MIR -12 250 1 439 303 186 22 chr1 35976196 35976470 -206687883 + L2 LINE L2 2845 3163 -109 815 288 17 30 chr1 35976485 35976718 -206687635 - MIR SINE MIR -22 240 11 223 346 16 37 chr1 35978175 35978363 -206685990 + L2 LINE L2 1496 1679 -1635 523 241 18 0 chr1 35978442 35978554 -206685799 - MER81 DNA DNA 0 114 1 218 105 26 0 chr1 35978579 35978617 -206685736 + CT-rich Low_complexity Low_complexity 1 39 0 449 244 163 66 chr1 35978618 35978629 -206685724 - L1ME4a LINE L1 0 6121 6112 1988 135 0 32 chr1 35978629 35978941 -206685412 - AluJo SINE Alu 0 312 11 449 244 163 66 chr1 35978941 35979187 -206685166 - L1ME4a LINE L1 -9 6112 5839 247 283 20 30 chr1 35979285 35979384 -206684969 + L2 LINE L2 1908 2005 -1309 443 287 67 12 chr1 35979599 35979763 -206684590 - MER117 DNA MER1_type 0 197 25 345 350 116 37 chr1 35981238 35982000 -206682353 + L2 LINE L2 2066 2887 -427 251 252 136 58 chr1 35983280 35983435 -206680918 + MIR SINE MIR 13 179 -83 180 226 0 75 chr1 35983445 35983498 -206680855 - L2 LINE L2 0 3313 3265 1348 283 93 26 chr1 35983499 35983970 -206680383 - L2 LINE L2 -2 3311 2873 2036 114 0 0 chr1 35983970 35984232 -206680121 + AluSg SINE Alu 42 303 -7 1348 283 93 26 chr1 35984232 35984751 -206679602 - L2 LINE L2 -440 2873 2240 944 263 23 27 chr1 35984995 35985254 -206679099 + MIR SINE MIR 5 262 0 665 237 132 22 chr1 35985282 35985510 -206678843 - MIR SINE MIR -8 254 2 792 245 47 30 chr1 35986013 35986246 -206678107 + MIR SINE MIR 11 247 -15 371 271 42 0 chr1 35987345 35987441 -206676912 + MIR SINE MIR 30 129 -133 824 307 121 25 chr1 35987446 35988025 -206676328 - L2 LINE L2 0 3313 2666 4515 127 6 55 chr1 35988033 35989327 -206675026 + L1MA4A LINE L1 4566 5780 -523 695 186 8 17 chr1 35989327 35989445 -206674908 + FLAM_A SINE Alu 1 117 -16 4515 127 6 55 chr1 35989445 35989710 -206674643 + L1MA4A LINE L1 5780 6056 -247 889 81 16 8 chr1 35989710 35989834 -206674519 - MER1B DNA MER1_type 0 339 215 419 200 137 0 chr1 35989821 35989916 -206674437 - MER1B DNA MER1_type -189 108 1 * 1397 103 20 43 chr1 35989916 35990100 -206674253 + L1MA4A LINE L1 6049 6227 -76 2554 140 59 5 chr1 35990100 35990506 -206673847 - MSTA LTR MaLR 0 428 1 1397 103 20 43 chr1 35990506 35990574 -206673779 + L1MA4A LINE L1 6227 6295 -8 234 127 0 89 chr1 35990510 35990571 -206673782 + L1MA4A LINE L1 6232 6286 -17 800 118 71 35 chr1 35990571 35990741 -206673612 + L1MA7 LINE L1 6116 6291 0 234 127 0 89 chr1 35990741 35990758 -206673595 + L1MA4A LINE L1 6286 6303 0 206 333 158 26 chr1 35990763 35991142 -206673211 - L2 LINE L2 -640 2674 2246 195 290 114 38 chr1 35991981 35992112 -206672241 + L2 LINE L2 2910 3050 -222 188 318 68 23 chr1 35992619 35992751 -206671602 + L2 LINE L2 2868 3005 -308 1461 245 72 33 chr1 35992756 35993099 -206671254 + L2 LINE L2 2510 2838 -475 2038 116 0 41 chr1 35993099 35993417 -206670936 - AluSq SINE Alu -8 305 1 1461 245 72 33 chr1 35993417 35993819 -206670534 + L2 LINE L2 2838 3301 -12 201 74 0 0 chr1 35993820 35993847 -206670506 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 318 355 134 28 chr1 35993850 35994067 -206670286 + L2 LINE L2 3015 3254 -18 379 314 180 35 chr1 35994244 35994677 -206669676 + L2 LINE L2 2238 2733 -581 256 355 38 42 chr1 35994775 35994917 -206669436 - MIR SINE MIR -45 163 20 353 306 10 53 chr1 35995037 35995243 -206669110 + L2 LINE L2 2893 3089 -183 937 273 8 30 chr1 35997553 35997820 -206666533 - MIR SINE MIR -1 261 1 286 279 99 9 chr1 35997853 35997964 -206666389 - L1MC/D LINE L1 -2000 5808 5688 288 53 0 0 chr1 35999240 35999278 -206665075 + (CA)n Simple_repeat Simple_repeat 2 39 0 338 289 66 36 chr1 35999960 36000126 -206664227 + MIR SINE MIR 20 190 -72 1773 156 3 13 chr1 36000552 36000859 -206663494 + AluJb SINE Alu 1 304 -8 193 294 59 0 chr1 36002447 36002515 -206661838 - L2 LINE L2 0 3272 3201 234 232 122 37 chr1 36002543 36002625 -206661728 - L2 LINE L2 0 3272 3184 1463 267 78 5 chr1 36002708 36003116 -206661237 - MLT1K LTR MaLR 0 588 151 186 297 155 87 chr1 36003311 36003530 -206660823 - L2 LINE L2 -389 2925 2692 658 283 133 32 chr1 36004056 36004402 -206659951 - L2 LINE L2 0 3313 2933 184 269 39 39 chr1 36005141 36005219 -206659134 - L2 LINE L2 -7 3306 3229 1721 127 4 4 chr1 36005551 36005810 -206658543 - AluSx SINE Alu -3 309 51 882 298 118 71 chr1 36006098 36006237 -206658116 + L2 LINE L2 1768 1899 -1415 2305 64 0 29 chr1 36006237 36006548 -206657805 + AluY SINE Alu 1 302 -9 882 298 118 71 chr1 36006548 36007453 -206656900 + L2 LINE L2 1899 2861 -453 659 266 25 101 chr1 36007467 36007783 -206656570 - MLT1I LTR MaLR -45 364 73 930 300 146 23 chr1 36007821 36008505 -206655848 + L2 LINE L2 1487 2254 -1060 849 162 0 22 chr1 36008560 36008696 -206655657 + FLAM_A SINE Alu 1 133 0 527 192 42 90 chr1 36008696 36008718 -206655635 - L1MB3 LINE L1 -20 6163 6141 1876 94 68 0 chr1 36008718 36009011 -206655342 + AluY SINE Alu 1 311 0 527 192 42 90 chr1 36009011 36009154 -206655199 - L1MB3 LINE L1 -42 6141 6005 235 241 35 0 chr1 36009149 36009207 -206655146 + L1MB3 LINE L1 5930 5989 -191 * 659 105 1 20 chr1 36009196 36009315 -206655038 - L1MB5 LINE L1 -294 5837 5723 703 284 152 10 chr1 36009444 36009747 -206654606 + L2 LINE L2 2632 2977 -337 366 216 52 0 chr1 36011125 36011222 -206653131 + MER5B DNA MER1_type 74 175 -3 357 313 31 68 chr1 36011494 36011686 -206652667 + MER5A DNA MER1_type 3 187 -2 289 286 59 25 chr1 36011896 36012015 -206652338 - L2 LINE L2 0 3313 3191 259 306 91 41 chr1 36012191 36012312 -206652041 + L2 LINE L2 3183 3309 -4 258 215 101 51 chr1 36012526 36012605 -206651748 - MIR SINE MIR -70 192 110 198 173 19 58 chr1 36012777 36012829 -206651524 - L2 LINE L2 -9 3304 3255 * 421 289 144 12 chr1 36012795 36012869 -206651484 - MIR SINE MIR -18 244 181 2193 100 0 10 chr1 36012869 36013169 -206651184 - AluSq SINE Alu -16 297 1 421 289 144 12 chr1 36013169 36013316 -206651037 - MIR SINE MIR -81 181 5 298 306 52 41 chr1 36013360 36013522 -206650831 + MIR SINE MIR 15 183 -25 190 298 18 0 chr1 36013878 36013935 -206650418 + MIR SINE MIR 96 153 -55 328 274 66 28 chr1 36014171 36014277 -206650076 - MIR3 SINE MIR -84 124 15 387 195 9 20 chr1 36015512 36015620 -206648733 + MIR SINE MIR 37 140 -68 324 319 121 7 chr1 36015719 36015860 -206648493 + MIR SINE MIR 96 252 -10 239 316 211 0 chr1 36016235 36016349 -206648004 - MIR3 SINE MIR -41 167 30 924 258 18 18 chr1 36016654 36016929 -206647424 + L2 LINE L2 2817 3091 -222 372 227 10 21 chr1 36017067 36017164 -206647189 - MIR SINE MIR -55 153 58 418 270 152 38 chr1 36018374 36018585 -206645768 + MIR SINE MIR 28 262 0 202 338 25 0 chr1 36018589 36018669 -206645684 - MIR SINE MIR -75 187 106 1578 279 49 15 chr1 36018924 36019393 -206644960 - LTR16C LTR ERVL -6 485 1 220 209 179 0 chr1 36020317 36020384 -206643969 + MIR SINE MIR 81 159 -103 3453 78 0 2 chr1 36020889 36021339 -206643014 + L1PB2 LINE L1 5702 6150 -1 30 69 0 0 chr1 36021345 36021403 -206642950 + AT_rich Low_complexity Low_complexity 1 58 0 207 0 0 0 chr1 36021594 36021617 -206642736 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7732 24 3 5 chr1 36021618 36023091 -206641262 - L1PA3 LINE L1 -17 6138 4668 22 0 0 0 chr1 36023107 36023129 -206641224 + AT_rich Low_complexity Low_complexity 1 22 0 2321 87 0 0 chr1 36023134 36023444 -206640909 + AluY SINE Alu 1 310 -1 310 231 322 0 chr1 36023500 36023621 -206640732 - L1ME4a LINE L1 0 6121 5962 324 127 0 0 chr1 36023855 36023910 -206640443 + (CA)n Simple_repeat Simple_repeat 2 56 0 1179 296 78 40 chr1 36024048 36024594 -206639759 - L1ME4a LINE L1 -754 5392 4868 2174 67 0 11 chr1 36024594 36024907 -206639446 + AluY SINE Alu 1 310 0 1179 296 78 40 chr1 36024907 36025933 -206638420 - L1ME4a LINE L1 -1278 4868 4101 710 252 169 21 chr1 36026210 36026547 -206637806 - L1ME4a LINE L1 -219 5902 5516 307 325 114 26 chr1 36026580 36026808 -206637545 + MIR SINE MIR 3 250 -12 373 354 88 8 chr1 36027233 36027493 -206636860 + L2 LINE L2 2507 2787 -527 746 284 70 9 chr1 36027608 36027837 -206636516 - MIR SINE MIR -7 255 13 198 167 0 0 chr1 36028196 36028232 -206636121 + (AATTG)n Simple_repeat Simple_repeat 2 37 0 412 254 166 28 chr1 36028456 36028637 -206635716 + MIR SINE MIR 31 236 -26 576 339 141 14 chr1 36028860 36029491 -206634862 - L2 LINE L2 -456 2858 2148 420 204 71 72 chr1 36030245 36030415 -206633938 - MIR SINE MIR -64 198 31 418 295 230 14 chr1 36030440 36030718 -206633635 + L3 LINE CR1 1226 1563 -14 284 179 30 0 chr1 36030800 36030867 -206633486 + GA-rich Low_complexity Low_complexity 1 69 0 228 220 40 0 chr1 36031437 36031487 -206632866 + MIR SINE MIR 61 112 -150 605 249 120 42 chr1 36031494 36031852 -206632501 + L1ME4a LINE L1 5525 5910 -211 228 330 160 0 chr1 36032569 36032663 -206631690 + L2 LINE L2 3122 3230 -42 210 313 152 36 chr1 36033457 36033569 -206630784 - L2 LINE L2 0 3272 3148 584 271 64 16 chr1 36033572 36033760 -206630593 + MIR SINE MIR 64 260 -2 309 231 62 97 chr1 36033761 36033956 -206630397 - MIR SINE MIR -27 235 48 186 212 82 94 chr1 36034902 36034987 -206629366 + MIR3 SINE MIR 111 194 -14 762 259 166 0 chr1 36036951 36037156 -206627197 + MIR SINE MIR 5 243 -19 385 304 65 43 chr1 36037165 36037385 -206626968 - MIR SINE MIR -29 233 10 478 280 75 32 chr1 36037487 36037584 -206626769 + MIR SINE MIR 65 156 -106 2857 195 28 21 chr1 36037584 36038194 -206626159 + MER90 LTR ERV1 1 614 0 478 280 75 32 chr1 36038194 36038282 -206626071 + MIR SINE MIR 156 258 -4 187 264 132 9 chr1 36039267 36039373 -206624980 + MIR SINE MIR 102 220 -42 272 163 0 0 chr1 36039374 36039423 -206624930 + MER90 LTR ERV1 401 449 -126 409 359 111 35 chr1 36039438 36039781 -206624572 - L2 LINE L2 -7 3265 2897 1679 253 88 17 chr1 36039810 36040346 -206624007 - MLT1F1 LTR MaLR 0 567 1 801 230 30 157 chr1 36040347 36040817 -206623536 - MLT1F1-int LTR MaLR -1 1370 961 840 264 109 22 chr1 36041324 36041566 -206622787 - MLT1F1-int LTR MaLR -765 606 386 2056 137 111 28 chr1 36041566 36041758 -206622595 + MSTC LTR MaLR 1 176 -252 1971 142 31 0 chr1 36041758 36042047 -206622306 + AluSg SINE Alu 1 298 -12 2056 137 111 28 chr1 36042047 36042249 -206622104 + MSTC LTR MaLR 176 428 0 840 264 109 22 chr1 36042249 36042472 -206621881 - MLT1F1-int LTR MaLR -985 386 1 1038 201 226 84 chr1 36042492 36042973 -206621380 - MLT1E LTR MaLR -22 571 2 998 158 23 6 chr1 36043989 36044160 -206620193 + MER5A DNA MER1_type 16 189 0 207 328 0 31 chr1 36044463 36044527 -206619826 - L3 LINE CR1 -928 649 588 936 258 92 65 chr1 36044575 36044897 -206619456 + L2 LINE L2 2836 3178 -135 2208 111 0 0 chr1 36044897 36045208 -206619145 - AluSg SINE Alu 0 311 1 936 258 92 65 chr1 36045208 36045348 -206619005 + L2 LINE L2 3178 3313 0 1980 199 53 91 chr1 36046096 36046704 -206617649 - MLT1E LTR MaLR -8 585 1 441 252 86 7 chr1 36046707 36046846 -206617507 - MIR SINE MIR -25 237 88 220 344 0 0 chr1 36047073 36047137 -206617216 - L2 LINE L2 -1890 1424 1361 180 350 43 17 chr1 36047344 36047461 -206616892 + L2 LINE L2 3182 3301 -12 331 248 37 0 chr1 36048036 36048145 -206616208 - MLT1K LTR MaLR -323 265 153 559 154 8 16 chr1 36048654 36048777 -206615576 + CT-rich Low_complexity Low_complexity 2 123 0 189 362 8 39 chr1 36050517 36050644 -206613709 - MIR SINE MIR -61 147 25 477 0 0 0 chr1 36051267 36051320 -206613033 + (CA)n Simple_repeat Simple_repeat 2 54 0 691 254 95 42 chr1 36051557 36052014 -206612339 + LTR33 LTR ERVL 1 514 -7 850 220 58 11 chr1 36052222 36052413 -206611940 - MER58A DNA MER1_type -23 201 2 262 264 14 14 chr1 36052437 36052509 -206611844 + MER112 DNA MER1_type 8 79 -181 450 247 19 82 chr1 36052512 36052670 -206611683 - MIR SINE MIR -10 252 105 284 184 85 135 chr1 36052683 36052824 -206611529 + MER112 DNA MER1_type 121 254 -6 423 240 10 31 chr1 36052888 36052984 -206611369 + MIR SINE MIR 7 100 -162 327 140 53 0 chr1 36053082 36053139 -206611214 + MLT1F1 LTR MaLR 66 125 -442 2459 209 21 12 chr1 36053139 36053712 -206610641 + L1MD3 LINE L1 7404 7981 -14 192 216 0 0 chr1 36053713 36053750 -206610603 + MER5B DNA MER1_type 135 171 -7 234 286 43 14 chr1 36053842 36053912 -206610441 + MER5B DNA MER1_type 2 73 -105 2236 189 18 39 chr1 36054050 36054559 -206609794 + MLT1D LTR MaLR 8 505 0 306 284 0 18 chr1 36054724 36054833 -206609520 + (CTCA)n Simple_repeat Simple_repeat 1 107 0 412 263 50 10 chr1 36055139 36055238 -206609115 - MIR SINE MIR -148 114 12 289 266 90 93 chr1 36055945 36056234 -206608119 + MLT1K LTR MaLR 210 497 -91 843 254 67 13 chr1 36056396 36056620 -206607733 - MIR SINE MIR -15 247 12 303 325 6 66 chr1 36056701 36056867 -206607486 - MIR3 SINE MIR -7 201 46 620 309 132 5 chr1 36057512 36057732 -206606621 - MIR SINE MIR -3 259 12 247 132 19 19 chr1 36058325 36058378 -206605975 - MLT1K LTR MaLR -343 245 193 381 305 169 37 chr1 36059336 36059608 -206604745 - L2 LINE L2 -17 3255 2948 302 399 7 13 chr1 36059609 36059762 -206604591 + L3 LINE CR1 1421 1572 -5 301 180 0 0 chr1 36060365 36060415 -206603938 + L2 LINE L2 3262 3311 -2 840 216 106 34 chr1 36060673 36060881 -206603472 - MER58A DNA MER1_type -1 223 1 552 357 63 36 chr1 36060901 36061265 -206603088 - L2 LINE L2 -35 3237 2864 181 333 16 0 chr1 36061399 36061462 -206602891 - L2 LINE L2 -667 2647 2584 556 246 18 0 chr1 36063190 36063304 -206601049 + MIR SINE MIR 3 118 -144 704 267 87 28 chr1 36063475 36063775 -206600578 - L2 LINE L2 -262 3051 2735 684 183 0 0 chr1 36063902 36064017 -206600336 - FLAM_C SINE Alu -28 115 1 874 238 45 42 chr1 36064019 36064351 -206600002 - L1ME1 LINE L1 -33 6133 5801 779 294 84 29 chr1 36065094 36065512 -206598841 + LTR33 LTR ERVL 1 441 -80 550 294 43 15 chr1 36065743 36065962 -206598391 - MIR SINE MIR -15 247 18 352 251 274 28 chr1 36066054 36066233 -206598120 - MIR SINE MIR -11 251 29 575 338 140 0 chr1 36067024 36067252 -206597101 - MIR SINE MIR -1 261 2 371 264 183 30 chr1 36067316 36067513 -206596840 + L3 LINE CR1 1226 1452 -125 492 270 46 63 chr1 36068283 36068457 -206595896 - MIR SINE MIR -36 226 56 389 305 133 26 chr1 36068526 36068759 -206595594 + MER112 DNA MER1_type 3 260 0 683 275 43 19 chr1 36068874 36069085 -206595268 - MIR SINE MIR -46 216 1 731 164 0 0 chr1 36069198 36069320 -206595033 - MER20 DNA MER1_type 0 219 98 374 168 19 75 chr1 36069356 36069463 -206594890 - MER20 DNA MER1_type -117 102 2 575 267 83 64 chr1 36069554 36069962 -206594391 - LTR33 LTR ERVL -4 517 102 382 219 0 0 chr1 36070036 36070109 -206594244 - LTR33 LTR ERVL -428 93 21 197 283 19 0 chr1 36070362 36070415 -206593938 + MIR SINE MIR 32 85 -123 1549 174 26 13 chr1 36070808 36071119 -206593234 + MER58B DNA MER1_type 23 337 -4 345 268 184 84 chr1 36071220 36071708 -206592645 - L2 LINE L2 -535 2779 2243 401 297 150 59 chr1 36073063 36073383 -206590970 - L2 LINE L2 0 3272 2924 9337 92 1 0 chr1 36076652 36077940 -206586413 + L1P LINE L1 1 1289 -4857 274 80 40 0 chr1 36077958 36078008 -206586345 + T-rich Low_complexity Low_complexity 4 55 0 42769 38 2 1 chr1 36078008 36084143 -206580210 - L1PA3 LINE L1 -10 6145 4 979 48 8 0 chr1 36084143 36084269 -206580084 + L1PA4 LINE L1 6026 6152 -3 331 300 46 54 chr1 36085847 36085977 -206578376 + MIR SINE MIR 69 197 -65 * 1457 265 138 5 chr1 36085976 36086680 -206577673 - L2 LINE L2 -52 3261 2459 625 200 40 20 chr1 36087311 36087461 -206576892 - MLT1H LTR MaLR -396 153 1 244 262 16 0 chr1 36088148 36088209 -206576144 + CT-rich Low_complexity Low_complexity 1 62 0 348 321 0 43 chr1 36088814 36089001 -206575352 + CT-rich Low_complexity Low_complexity 2 180 0 238 258 23 98 chr1 36089527 36089659 -206574694 + MIR SINE MIR 72 193 -69 335 325 50 17 chr1 36091904 36092024 -206572329 + L2 LINE L2 3179 3302 -11 207 0 0 0 chr1 36093075 36093098 -206571255 + (T)n Simple_repeat Simple_repeat 1 23 0 376 316 7 43 chr1 36094079 36094218 -206570135 - L2 LINE L2 0 3272 3139 217 246 51 94 chr1 36095106 36095244 -206569109 + MIR SINE MIR 91 222 -40 421 209 181 0 chr1 36095268 36095373 -206568980 + L2 LINE L2 3188 3311 -2 432 297 40 7 chr1 36095822 36095970 -206568383 + MIR SINE MIR 51 203 -59 274 301 26 26 chr1 36096134 36096247 -206568106 + MIR SINE MIR 28 140 -68 202 217 0 67 chr1 36096795 36096855 -206567498 + L2 LINE L2 3217 3272 0 337 303 62 16 chr1 36097476 36097610 -206566743 + MIR SINE MIR 14 141 -67 195 129 0 0 chr1 36097747 36097778 -206566575 + (TCTCC)n Simple_repeat Simple_repeat 1 31 0 237 338 129 0 chr1 36097936 36098075 -206566278 - MIR SINE MIR -79 183 27 360 185 25 12 chr1 36098183 36098264 -206566089 - L1MC4 LINE L1 0 8042 7961 428 277 66 24 chr1 36098297 36098463 -206565890 - L2 LINE L2 -1231 2083 1911 970 360 41 17 chr1 36099029 36099613 -206564740 - L2 LINE L2 -1791 1523 926 415 301 60 44 chr1 36100875 36101058 -206563295 - MIR SINE MIR -18 244 59 321 235 165 9 chr1 36101424 36101539 -206562814 + L2 LINE L2 3138 3270 -2 329 204 107 10 chr1 36103325 36103428 -206560925 - L1ME3A LINE L1 -234 5936 5824 3651 305 81 29 chr1 36103478 36105885 -206558468 - L1MEd LINE L1 -1479 4650 2119 1481 245 129 48 chr1 36106231 36106273 -206558080 - L1MEd LINE L1 -4592 1537 1500 826 101 39 0 chr1 36106273 36106402 -206557951 - L1PA16 LINE L1 -9 6157 6024 1481 245 129 48 chr1 36106402 36107446 -206556907 - L1MEd LINE L1 -4629 1500 419 1408 212 54 59 chr1 36107754 36108141 -206556212 - MLT1B LTR MaLR -5 385 1 198 0 0 0 chr1 36108162 36108184 -206556169 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 324 311 201 5 chr1 36109169 36109378 -206554975 - L2 LINE L2 -179 3093 2844 659 324 23 27 chr1 36109479 36109741 -206554612 - MIR SINE MIR 0 262 2 340 299 68 8 chr1 36110047 36110164 -206554189 + L2 LINE L2 3149 3272 0 385 277 80 15 chr1 36111592 36111729 -206552624 - MER5A DNA MER1_type -6 183 38 556 291 192 8 chr1 36111785 36112149 -206552204 + L2 LINE L2 2828 3258 -14 262 231 39 0 chr1 36112451 36112529 -206551824 + GA-rich Low_complexity Low_complexity 2 82 0 336 221 13 13 chr1 36112707 36112784 -206551569 - L2 LINE L2 0 3272 3196 224 224 0 0 chr1 36113181 36113230 -206551123 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 585 259 71 25 chr1 36113780 36114029 -206550324 - MLT1J LTR MaLR -19 596 233 773 210 47 70 chr1 36114372 36114586 -206549767 - MER58C DNA MER1_type -6 209 1 248 263 0 0 chr1 36115322 36115379 -206548974 + L2 LINE L2 3210 3266 -6 541 245 66 7 chr1 36116107 36116258 -206548095 + MIR SINE MIR 2 161 -101 5242 57 8 3 chr1 36116266 36117386 -206546967 - MER11A LTR ERVK 0 1266 1 231 273 18 0 chr1 36117400 36117455 -206546898 + MIR SINE MIR 188 243 -19 1129 238 5 0 chr1 36117527 36117750 -206546603 + MER58A DNA MER1_type 1 224 0 213 309 91 51 chr1 36117843 36118018 -206546335 - L2 LINE L2 -17 3255 3074 233 341 67 24 chr1 36119177 36119341 -206545012 + L2 LINE L2 2697 2867 -447 232 302 44 57 chr1 36119395 36119554 -206544799 + L2 LINE L2 2944 3100 -213 392 283 115 53 chr1 36120589 36120833 -206543520 + L2 LINE L2 3005 3263 -9 1837 153 0 7 chr1 36122088 36122388 -206541965 + AluJb SINE Alu 1 298 -14 309 248 227 17 chr1 36122483 36122659 -206541694 - MIR SINE MIR -7 255 36 1514 207 57 94 chr1 36122969 36123032 -206541321 - MLT2B1 LTR ERVL 0 520 456 860 52 52 17 chr1 36123032 36123206 -206541147 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1514 207 57 94 chr1 36123206 36123682 -206540671 - MLT2B1 LTR ERVL -64 456 1 434 259 30 30 chr1 36123830 36123965 -206540388 - MIR3 SINE MIR -7 201 67 320 264 114 70 chr1 36124342 36124543 -206539810 + MIR SINE MIR 32 241 -21 250 300 129 9 chr1 36125318 36125348 -206539005 + MIR SINE MIR 18 43 -219 2292 96 0 0 chr1 36125348 36125650 -206538703 - AluSx SINE Alu -10 302 1 250 300 129 9 chr1 36125650 36125790 -206538563 + MIR SINE MIR 43 211 -51 195 229 86 105 chr1 36125862 36125967 -206538386 + MIR SINE MIR 117 219 -43 1693 206 73 5 chr1 36126594 36126993 -206537360 - MLT1C LTR MaLR -41 426 1 510 255 76 13 chr1 36127137 36127294 -206537059 + MIR SINE MIR 40 206 -56 209 217 43 43 chr1 36127408 36127477 -206536876 + MIR3 SINE MIR 11 79 -129 186 376 45 25 chr1 36127644 36127801 -206536552 + L3 LINE CR1 696 855 -722 415 237 30 23 chr1 36127917 36128048 -206536305 + L3 LINE CR1 1173 1304 -273 551 192 8 56 chr1 36128349 36128474 -206535879 - MIR SINE MIR -119 143 25 235 377 0 0 chr1 36128641 36128718 -206535635 - L2 LINE L2 -5 3267 3191 519 267 128 31 chr1 36128892 36129087 -206535266 + MIR SINE MIR 20 233 -29 486 216 29 0 chr1 36130032 36130134 -206534219 - MLT1C LTR MaLR -362 105 1 1078 224 45 72 chr1 36130256 36130400 -206533953 - MLT1B LTR MaLR -68 322 176 360 43 0 0 chr1 36130400 36130446 -206533907 + (GA)n Simple_repeat Simple_repeat 1 46 0 1078 224 45 72 chr1 36130446 36130632 -206533721 - MLT1B LTR MaLR -214 176 1 244 365 125 24 chr1 36130635 36131060 -206533293 + L2 LINE L2 2346 2813 -501 205 263 18 0 chr1 36131123 36131180 -206533173 + L2 LINE L2 3210 3267 -5 330 279 102 24 chr1 36131311 36131509 -206532844 + MIR SINE MIR 30 245 -17 528 307 118 49 chr1 36132361 36132648 -206531705 - L2 LINE L2 -2 3270 2964 291 282 55 18 chr1 36133649 36133759 -206530594 - L2 LINE L2 -8 3264 3151 284 305 72 87 chr1 36133962 36134296 -206530057 - L2 LINE L2 -6 3266 2938 645 228 129 6 chr1 36134423 36134594 -206529759 - MIR SINE MIR -68 194 3 277 305 142 32 chr1 36134682 36135026 -206529327 - L2 LINE L2 -508 2806 2425 189 351 43 32 chr1 36135135 36135229 -206529124 + L2 LINE L2 3139 3233 -39 423 197 38 76 chr1 36135233 36135365 -206528988 - L2 LINE L2 -5 3308 3182 285 277 213 11 chr1 36135413 36135507 -206528846 + L2 LINE L2 3201 3313 0 818 115 0 0 chr1 36135562 36135675 -206528678 + FRAM SINE Alu 54 166 -10 243 308 47 28 chr1 36135729 36135836 -206528517 - L2 LINE L2 -218 3054 2946 463 293 210 45 chr1 36137010 36138312 -206526041 + L2 LINE L2 945 2461 -853 1217 199 47 73 chr1 36138386 36138809 -206525544 - MER96B DNA MER1_type? 0 417 6 264 335 210 17 chr1 36138810 36138986 -206525367 + L2 LINE L2 3050 3259 -13 252 0 0 0 chr1 36139719 36139747 -206524606 + (CA)n Simple_repeat Simple_repeat 1 28 0 196 137 39 0 chr1 36140165 36140216 -206524137 + CT-rich Low_complexity Low_complexity 1 53 0 185 188 0 0 chr1 36143450 36143482 -206520871 - L2 LINE L2 -98 3174 3143 360 64 0 0 chr1 36145275 36145322 -206519031 + (CA)n Simple_repeat Simple_repeat 2 48 0 996 181 73 15 chr1 36145390 36145595 -206518758 - MER20 DNA MER1_type -1 218 2 389 350 25 20 chr1 36146750 36146950 -206517403 - L1ME LINE L1 -388 5733 5533 282 257 148 10 chr1 36147383 36147484 -206516869 - L2 LINE L2 0 3313 3199 207 200 0 0 chr1 36147632 36147672 -206516681 + (CA)n Simple_repeat Simple_repeat 2 41 0 504 301 62 86 chr1 36148333 36148868 -206515485 - L1ME LINE L1 -1214 4932 4411 451 308 16 0 chr1 36150374 36150511 -206513842 - MER5A DNA MER1_type -8 170 32 349 327 26 18 chr1 36150964 36151077 -206513276 - L2 LINE L2 -26 3246 3133 213 325 50 0 chr1 36153131 36153251 -206511102 - MIR SINE MIR -44 218 93 602 219 47 0 chr1 36153942 36154070 -206510283 - MER94 DNA DNA 0 134 1 2558 74 0 0 chr1 36154224 36154535 -206509818 + AluY SINE Alu 1 311 0 307 287 134 30 chr1 36154622 36154786 -206509567 + L2 LINE L2 2922 3102 -211 392 259 55 93 chr1 36154791 36155140 -206509213 - MLT1I LTR MaLR 0 450 73 294 262 33 49 chr1 36155197 36155319 -206509034 + L2 LINE L2 3128 3247 -66 575 358 103 25 chr1 36155590 36156296 -206508057 - L2 LINE L2 -337 2977 2217 218 214 0 36 chr1 36156446 36156502 -206507851 - L2 LINE L2 -926 2388 2335 4886 30 0 0 chr1 36156533 36157096 -206507257 - L1PA3 LINE L1 -1 6154 5592 457 338 49 21 chr1 36157151 36157435 -206506918 + L2 LINE L2 2819 3110 -203 253 341 176 13 chr1 36157555 36157857 -206506496 - L2 LINE L2 -999 2315 1965 972 156 12 117 chr1 36157955 36158211 -206506142 + AluJo SINE Alu 71 299 -13 393 315 14 24 chr1 36158737 36158950 -206505403 + L2 LINE L2 1169 1379 -1935 442 258 72 45 chr1 36159160 36159287 -206505066 + MER112 DNA MER1_type 33 155 -105 2537 163 9 21 chr1 36159287 36159716 -206504637 - MSTB LTR MaLR -2 424 1 8298 179 74 3 chr1 36159716 36161258 -206503095 - MSTB-int LTR MaLR 0 1651 1 2387 151 57 5 chr1 36161258 36161661 -206502692 - MSTB LTR MaLR 0 426 3 442 258 72 45 chr1 36161661 36161752 -206502601 + MER112 DNA MER1_type 154 259 -1 598 288 44 57 chr1 36161763 36161889 -206502464 + L2 LINE L2 1570 1696 -1618 180 0 0 0 chr1 36161889 36161909 -206502444 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 598 288 44 57 chr1 36161909 36161921 -206502432 + L2 LINE L2 1696 1707 -1607 2030 116 11 25 chr1 36161921 36162206 -206502147 + AluSc SINE Alu 1 281 -28 598 288 44 57 chr1 36162206 36162607 -206501746 + L2 LINE L2 1707 2103 -1211 478 301 84 31 chr1 36162679 36163038 -206501315 - L1M4 LINE L1 -743 5403 5026 646 280 28 19 chr1 36163312 36163526 -206500827 + MIR SINE MIR 14 229 -33 273 275 93 39 chr1 36163610 36163792 -206500561 - L1M4 LINE L1 -1515 4631 4440 520 301 85 33 chr1 36164248 36164446 -206499907 - L1M4 LINE L1 -2998 3148 2962 2521 55 6 6 chr1 36164446 36164757 -206499596 + AluY SINE Alu 1 311 0 520 301 85 33 chr1 36164757 36165007 -206499346 - L1M4 LINE L1 -3184 2962 2677 429 204 19 19 chr1 36165937 36166040 -206498313 + MER5B DNA MER1_type 1 103 -75 320 322 102 68 chr1 36166563 36166827 -206497526 - HAL1b LINE L1 -563 785 513 461 250 43 75 chr1 36167070 36167258 -206497095 - L2 LINE L2 0 3313 3132 694 234 79 9 chr1 36167804 36168018 -206496335 + MIR SINE MIR 19 247 -15 344 333 114 32 chr1 36168727 36169042 -206495311 - L1ME LINE L1 -304 5817 5477 210 227 0 30 chr1 36169204 36169270 -206495083 + T-rich Low_complexity Low_complexity 4 67 0 501 178 72 59 chr1 36169798 36169950 -206494403 - HAL1b LINE L1 -55 1293 1140 219 366 24 8 chr1 36171779 36171902 -206492451 + L2 LINE L2 3148 3272 0 486 184 72 59 chr1 36172207 36172359 -206491994 - HAL1b LINE L1 -55 1293 1140 285 280 11 32 chr1 36172361 36172454 -206491899 + MER5A DNA MER1_type 77 167 -22 443 270 72 22 chr1 36172519 36172741 -206491612 - L3 LINE CR1 -73 1504 1272 195 356 82 20 chr1 36172761 36172907 -206491446 - MIR SINE MIR -1 261 107 322 333 0 0 chr1 36172978 36173074 -206491279 + (TG)n Simple_repeat Simple_repeat 1 96 0 273 323 45 81 chr1 36173655 36173905 -206490448 - MIR SINE MIR -6 256 12 418 244 57 8 chr1 36174133 36174256 -206490097 + MIR SINE MIR 104 232 -30 243 173 0 39 chr1 36175450 36175502 -206488851 + L2 LINE L2 3264 3313 0 260 327 82 0 chr1 36175973 36176083 -206488270 + L2 LINE L2 3185 3303 -10 578 246 126 9 chr1 36176169 36176384 -206487969 + MIR SINE MIR 21 260 -2 2164 63 8 0 chr1 36177329 36177584 -206486769 - AluY SINE Alu -14 297 41 573 162 197 0 chr1 36178174 36178291 -206486062 - MER58B DNA MER1_type 0 341 202 443 277 126 13 chr1 36178481 36178640 -206485713 - MIR SINE MIR -49 213 37 2335 119 0 0 chr1 36179008 36179318 -206485035 - AluSg SINE Alu 0 310 1 651 164 18 0 chr1 36179355 36179465 -206484888 + FRAM SINE Alu 54 165 -11 195 375 62 0 chr1 36179767 36179879 -206484474 - MIR SINE MIR -70 192 74 701 261 77 31 chr1 36179879 36179928 -206484425 - MIR SINE MIR -15 247 202 1907 136 55 33 chr1 36179928 36180295 -206484058 - THE1C LTR MaLR 0 375 1 701 261 77 31 chr1 36180295 36180467 -206483886 - MIR SINE MIR -60 202 16 677 236 39 81 chr1 36180754 36181012 -206483341 + MIR SINE MIR 10 256 -6 1854 203 29 13 chr1 36181132 36181516 -206482837 - MLT1B LTR MaLR 0 390 1 203 213 85 0 chr1 36181544 36181591 -206482762 - L2 LINE L2 -1 3312 3262 2863 238 118 48 chr1 36181758 36184131 -206480222 - L1MC5 LINE L1 -48 7913 5364 1619 32 0 0 chr1 36184153 36184338 -206480015 + L1PA3 LINE L1 5968 6152 -3 29 0 0 0 chr1 36184338 36184367 -206479986 + AT_rich Low_complexity Low_complexity 1 29 0 228 256 165 33 chr1 36185014 36185135 -206479218 + MIR SINE MIR 126 262 0 438 276 98 11 chr1 36185174 36185348 -206479005 + MIR SINE MIR 32 220 -42 430 233 159 37 chr1 36185707 36185870 -206478483 + MIR SINE MIR 45 227 -35 896 272 76 46 chr1 36185970 36186364 -206477989 - MLT1I LTR MaLR 0 409 4 419 290 0 23 chr1 36186573 36186704 -206477649 - L2 LINE L2 0 3272 3145 821 152 116 61 chr1 36187783 36187981 -206476372 - MER58C DNA MER1_type -5 210 2 252 224 31 141 chr1 36189827 36190019 -206474334 - L3 LINE CR1 -11 1566 1396 24 32 0 0 chr1 36190274 36190305 -206474048 + AT_rich Low_complexity Low_complexity 1 31 0 247 260 94 0 chr1 36190313 36190409 -206473944 - L2 LINE L2 -10 3303 3199 228 349 23 23 chr1 36190449 36190578 -206473775 - MER5B DNA MER1_type -49 129 1 481 205 0 0 chr1 36191485 36191568 -206472785 - MER2 DNA MER2_type -262 83 1 715 293 89 17 chr1 36191574 36191932 -206472421 + L1ME4a LINE L1 5615 5998 -123 233 324 69 61 chr1 36192454 36192701 -206471652 - L2 LINE L2 -46 3226 2978 2200 100 3 10 chr1 36192819 36193110 -206471243 + AluSp SINE Alu 1 289 -24 180 0 0 0 chr1 36193114 36193134 -206471219 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 289 290 81 16 chr1 36193519 36193643 -206470710 + L2 LINE L2 3181 3312 -1 337 302 60 55 chr1 36193943 36194178 -206470175 - MIR SINE MIR -14 248 13 267 208 30 89 chr1 36194753 36194854 -206469499 + L2 LINE L2 3154 3248 -24 444 194 0 8 chr1 36195143 36195248 -206469105 - MER5A DNA MER1_type -80 109 6 814 245 0 11 chr1 36195627 36195811 -206468542 + MIR SINE MIR 13 194 -68 229 315 22 33 chr1 36196063 36196247 -206468106 + L2 LINE L2 2147 2328 -986 257 317 41 8 chr1 36196693 36196816 -206467537 + L2 LINE L2 2933 3059 -213 187 244 0 116 chr1 36196916 36197002 -206467351 + L2 LINE L2 3238 3313 0 325 293 28 0 chr1 36199350 36199456 -206464897 + MIR SINE MIR 71 179 -83 725 253 216 18 chr1 36199763 36200151 -206464202 - L2 LINE L2 -19 3294 2830 258 321 47 9 chr1 36200624 36200730 -206463623 + MIR SINE MIR 64 173 -89 276 30 0 0 chr1 36203377 36203410 -206460943 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 205 289 164 0 chr1 36203626 36203730 -206460623 - L2 LINE L2 -30 3242 3122 202 300 42 58 chr1 36203963 36204083 -206460270 + MIR SINE MIR 115 232 -30 1390 147 0 0 chr1 36204994 36205236 -206459117 + AluJb SINE Alu 87 328 0 371 145 14 0 chr1 36206076 36206145 -206458208 + (TG)n Simple_repeat Simple_repeat 2 71 0 740 173 7 0 chr1 36206896 36207046 -206457307 + (CA)n Simple_repeat Simple_repeat 1 151 0 21 0 0 0 chr1 36207540 36207561 -206456792 + AT_rich Low_complexity Low_complexity 1 21 0 326 287 52 12 chr1 36207753 36208004 -206456349 + L1MB8 LINE L1 3092 3352 -2794 432 141 0 0 chr1 36208008 36208072 -206456281 + Alu SINE Alu 234 297 -15 255 255 129 61 chr1 36208075 36208369 -206455984 + L1MB8 LINE L1 3351 3664 -2482 * 1308 197 55 36 chr1 36208337 36208717 -206455636 + L1MA7 LINE L1 5920 6334 0 1573 105 4 42 chr1 36208814 36209053 -206455300 + AluY SINE Alu 74 303 -8 461 100 29 0 chr1 36209131 36209201 -206455152 - MER116 DNA Mariner -8 72 1 546 272 32 43 chr1 36209206 36209552 -206454801 + L1MB8 LINE L1 3864 4205 -1941 840 285 50 32 chr1 36209809 36210203 -206454150 + L1MB8 LINE L1 5327 5720 -450 498 305 44 49 chr1 36210427 36210817 -206453536 + L1ME4a LINE L1 4463 4850 -1296 198 182 30 61 chr1 36210988 36211054 -206453299 - L2 LINE L2 0 3272 3209 338 240 51 61 chr1 36211106 36211302 -206453051 + L1ME4a LINE L1 5805 5998 -123 1434 185 50 57 chr1 36211456 36211915 -206452438 - L1MC5 LINE L1 -299 7662 7207 1888 165 47 33 chr1 36213410 36213504 -206450849 + L1MB8 LINE L1 5738 5829 -349 2391 84 7 0 chr1 36213504 36213800 -206450553 + AluSg SINE Alu 1 298 -12 1888 165 47 33 chr1 36213800 36214129 -206450224 + L1MB8 LINE L1 5829 6167 -11 316 323 39 19 chr1 36214255 36214410 -206449943 + MIR SINE MIR 53 210 -52 183 237 0 0 chr1 36215449 36215487 -206448866 + MIR SINE MIR 109 146 -62 257 343 118 43 chr1 36215970 36216250 -206448103 - L2 LINE L2 -64 3208 2908 228 200 0 0 chr1 36216477 36216522 -206447831 - L2 LINE L2 -37 3235 3191 393 305 94 0 chr1 36217702 36217830 -206446523 - L2 LINE L2 0 3272 3133 4814 145 35 27 chr1 36219047 36219072 -206445281 - L1MB7 LINE L1 -60 6124 6101 2043 141 37 45 chr1 36219072 36219448 -206444905 - THE1C LTR MaLR 0 375 3 4814 145 35 27 chr1 36219448 36219720 -206444633 - L1MB7 LINE L1 -83 6101 5833 2152 119 0 3 chr1 36219720 36220035 -206444318 - AluSp SINE Alu 0 314 1 4814 145 35 27 chr1 36220035 36220599 -206443754 - L1MB7 LINE L1 -351 5833 5254 491 272 115 37 chr1 36221105 36221348 -206443005 + MIR SINE MIR 1 262 0 262 282 54 0 chr1 36221378 36221483 -206442870 + MIR SINE MIR 78 146 -62 326 307 52 18 chr1 36221693 36221819 -206442534 - MIR SINE MIR -63 145 37 318 309 67 66 chr1 36222455 36223053 -206441300 + L2 LINE L2 2678 3272 0 182 244 19 115 chr1 36223415 36223571 -206440782 - L2 LINE L2 -214 3058 2918 229 341 14 73 chr1 36223884 36224104 -206440249 - L1MC4 LINE L1 -36 8006 7800 368 273 8 0 chr1 36224666 36224798 -206439555 + CT-rich Low_complexity Low_complexity 1 133 0 1912 135 31 24 chr1 36224979 36225268 -206439085 - AluSx SINE Alu -21 291 1 23 54 0 0 chr1 36225276 36225313 -206439040 + AT_rich Low_complexity Low_complexity 1 37 0 349 261 87 40 chr1 36225500 36225855 -206438498 - L1MC4a LINE L1 -297 5824 5475 494 269 151 5 chr1 36226660 36226846 -206437507 + MIR SINE MIR 15 227 -35 180 0 0 0 chr1 36227550 36227570 -206436783 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 284 309 59 29 chr1 36227703 36227839 -206436514 - MIR3 SINE MIR -62 146 7 290 242 84 73 chr1 36227854 36228032 -206436321 - L2 LINE L2 -5 3308 3129 219 324 65 28 chr1 36228324 36228432 -206435921 - L2 LINE L2 -3 3269 3158 524 259 171 16 chr1 36228449 36228700 -206435653 - MLT1J LTR MaLR 0 511 222 1667 218 77 51 chr1 36231397 36231820 -206432533 + MLT1D LTR MaLR 1 440 -65 2176 130 0 0 chr1 36231820 36232128 -206432225 - AluSx SINE Alu -4 308 1 1667 218 77 51 chr1 36232128 36232196 -206432157 + MLT1D LTR MaLR 440 505 0 1916 159 7 0 chr1 36232588 36232883 -206431470 + AluSx SINE Alu 1 297 -15 410 214 0 29 chr1 36232921 36233024 -206431329 - MLT1J2 LTR MaLR -2 448 349 225 0 0 0 chr1 36233629 36233654 -206430699 + (A)n Simple_repeat Simple_repeat 1 25 0 1844 73 0 17 chr1 36233656 36233889 -206430464 + AluY SINE Alu 78 306 -5 272 277 102 6 chr1 36233902 36234079 -206430274 + L1M4 LINE L1 2371 2564 -3582 303 323 91 5 chr1 36234152 36234303 -206430050 - MIR SINE MIR -27 235 62 2371 104 0 0 chr1 36234303 36234602 -206429751 + AluSc SINE Alu 1 299 -10 303 323 91 5 chr1 36234602 36234648 -206429705 - MIR SINE MIR -200 62 21 220 224 0 0 chr1 36235436 36235485 -206428868 + T-rich Low_complexity Low_complexity 1 49 0 1118 132 53 5 chr1 36235485 36235674 -206428679 - MSTB1 LTR MaLR -47 385 188 45118 37 5 0 chr1 36235681 36241802 -206422551 - L1PA4 LINE L1 -3 6152 1 189 0 0 0 chr1 36241878 36241899 -206422454 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 213 303 0 13 chr1 36242878 36242954 -206421399 + L2 LINE L2 3008 3082 -190 237 341 0 22 chr1 36243452 36243543 -206420810 - L2 LINE L2 -4 3268 3180 1628 211 56 44 chr1 36243719 36244169 -206420184 - MLT1C LTR MaLR -6 461 7 398 298 166 5 chr1 36244600 36244805 -206419548 + MIR SINE MIR 15 252 -10 379 293 67 72 chr1 36245393 36245968 -206418385 + L2 LINE L2 2615 3263 -9 404 259 54 36 chr1 36246317 36246483 -206417870 + MIR SINE MIR 57 225 -37 264 100 0 0 chr1 36246560 36246600 -206417753 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 225 0 0 0 chr1 36247231 36247256 -206417097 + (CA)n Simple_repeat Simple_repeat 2 26 0 314 293 68 43 chr1 36247258 36247582 -206416771 + L1ME4a LINE L1 4334 4665 -1481 1079 211 173 11 chr1 36248071 36248331 -206416022 + AluSp SINE Alu 2 303 0 468 238 94 129 chr1 36248464 36248960 -206415393 + L1ME4a LINE L1 5122 5595 -526 2171 74 14 21 chr1 36248960 36249279 -206415074 - AluY SINE Alu 0 317 1 468 238 94 129 chr1 36249279 36249401 -206414952 + L1ME4a LINE L1 5595 5720 -401 425 290 89 70 chr1 36249451 36249710 -206414643 + L1ME4a LINE L1 5856 6119 -2 1159 167 16 25 chr1 36249736 36249981 -206414372 + L1MD3 LINE L1 7750 7992 -3 380 366 169 12 chr1 36250999 36251253 -206413100 - L2 LINE L2 -5 3267 2974 186 200 67 0 chr1 36251238 36251283 -206413070 - L2 LINE L2 -1298 2016 1969 * 213 231 112 52 chr1 36251332 36251466 -206412887 - L2 LINE L2 -287 2985 2844 239 217 0 0 chr1 36252752 36252798 -206411555 + L2 LINE L2 2992 3037 -235 298 313 224 9 chr1 36253485 36253699 -206410654 - MIR SINE MIR -1 261 2 539 170 11 0 chr1 36253886 36253980 -206410373 - MER58A DNA MER1_type -5 102 8 230 295 13 0 chr1 36254528 36254606 -206409747 + (TTCA)n Simple_repeat Simple_repeat 4 82 0 1696 204 0 7 chr1 36254914 36255218 -206409135 - AluJo SINE Alu -9 303 2 222 272 11 84 chr1 36255403 36255594 -206408759 + (ATGGTG)n Simple_repeat Simple_repeat 4 180 0 1864 138 0 38 chr1 36256304 36256594 -206407759 - AluJb SINE Alu -12 300 22 590 318 45 9 chr1 36256893 36257113 -206407240 - MIR SINE MIR -6 256 29 482 274 61 24 chr1 36257420 36257584 -206406769 + MIR SINE MIR 14 183 -79 281 156 0 16 chr1 36257616 36257680 -206406673 + CT-rich Low_complexity Low_complexity 2 64 0 814 254 15 50 chr1 36258227 36258447 -206405906 + MIR SINE MIR 43 254 -8 472 307 7 21 chr1 36258454 36258594 -206405759 - MIR SINE MIR -105 157 20 474 293 125 34 chr1 36259409 36259617 -206404736 + MIR SINE MIR 26 252 -10 384 347 24 0 chr1 36260594 36260718 -206403635 - MIR SINE MIR -76 186 60 2188 97 0 29 chr1 36260741 36261049 -206403304 + AluY SINE Alu 1 299 -12 593 202 40 0 chr1 36261052 36261176 -206403177 - L1MB5 LINE L1 -8 6166 6038 442 294 56 14 chr1 36261614 36261757 -206402596 - MIR SINE MIR -6 256 108 521 347 181 17 chr1 36261863 36262699 -206401654 + L2 LINE L2 1724 2696 -618 1369 206 72 9 chr1 36262744 36263099 -206401254 + L1ME2 LINE L1 5783 6162 -2 460 330 70 65 chr1 36263193 36263651 -206400702 + L2 LINE L2 2808 3267 -5 941 172 69 39 chr1 36264025 36264130 -206400223 + MER6B DNA MER2_type 1 101 -764 2189 150 0 0 chr1 36264130 36264436 -206399917 - AluSx SINE Alu -6 306 1 941 172 69 39 chr1 36264436 36264534 -206399819 + MER6B DNA MER2_type 101 210 0 229 250 0 0 chr1 36264659 36264707 -206399646 - L1ME LINE L1 -509 5653 5606 7977 111 16 19 chr1 36264709 36265418 -206398935 - HSMAR2 DNA Mariner -1 1301 596 2500 84 0 0 chr1 36265418 36265717 -206398636 - AluY SINE Alu -12 299 1 7977 111 16 19 chr1 36265717 36266291 -206398062 - HSMAR2 DNA Mariner -706 596 22 195 368 138 24 chr1 36267275 36267615 -206396738 + L2 LINE L2 365 743 -2571 582 221 139 0 chr1 36267750 36267908 -206396445 - MER58A DNA MER1_type 0 224 45 640 332 51 4 chr1 36267920 36268155 -206396198 + MIR SINE MIR 17 262 0 182 341 112 17 chr1 36268263 36268404 -206395949 + MIR SINE MIR 57 220 -42 441 0 0 0 chr1 36268404 36268453 -206395900 + (TG)n Simple_repeat Simple_repeat 2 50 0 182 341 112 17 chr1 36268453 36268490 -206395863 + MIR SINE MIR 220 252 -10 198 245 19 19 chr1 36268748 36268801 -206395552 - MIR SINE MIR -34 228 176 435 19 0 0 chr1 36269861 36269913 -206394440 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 450 351 76 0 chr1 36270130 36270301 -206394052 + MIR SINE MIR 63 246 -16 201 39 0 0 chr1 36271389 36271415 -206392938 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2251 118 13 3 chr1 36271422 36271728 -206392625 - AluSx SINE Alu -1 311 3 507 281 33 0 chr1 36271884 36272005 -206392348 - L2 LINE L2 0 3313 3189 556 276 201 28 chr1 36272464 36272783 -206391570 - L2 LINE L2 0 3313 2940 1077 158 108 5 chr1 36273179 36273382 -206390971 - MER58A DNA MER1_type 0 224 1 270 312 19 58 chr1 36273402 36273607 -206390746 - L1MC4a LINE L1 -1900 5908 5712 354 320 17 46 chr1 36273766 36273941 -206390412 + MIR SINE MIR 47 216 -46 214 329 62 20 chr1 36274134 36274288 -206390065 - L2 LINE L2 -8 3264 3129 516 274 73 57 chr1 36274471 36274719 -206389634 - MLT1J LTR MaLR -40 471 220 706 247 96 15 chr1 36274791 36275269 -206389084 - L2 LINE L2 -15 3298 2695 250 254 0 45 chr1 36275373 36275440 -206388913 + MIR SINE MIR 61 124 -138 350 330 37 0 chr1 36279456 36279565 -206384788 - L2 LINE L2 -7 3265 3153 410 315 134 0 chr1 36279675 36279802 -206384551 - L3 LINE CR1 -3 1574 1431 295 216 165 34 chr1 36280646 36280822 -206383531 - L1ME4a LINE L1 -1 6120 5922 753 283 103 22 chr1 36280853 36281387 -206382966 - L1ME4a LINE L1 -259 5862 5286 776 325 136 23 chr1 36281424 36282033 -206382320 - L1ME4a LINE L1 -906 5240 4563 293 303 37 33 chr1 36282046 36282290 -206382063 - L1ME4a LINE L1 -1602 4544 4300 349 323 67 21 chr1 36282696 36283207 -206381146 - L1ME4a LINE L1 -2954 3192 2659 590 288 61 0 chr1 36283220 36283383 -206380970 + MIR SINE MIR 22 194 -68 384 40 0 0 chr1 36283682 36283732 -206380621 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 210 171 0 24 chr1 36283737 36283778 -206380575 + GA-rich Low_complexity Low_complexity 1 40 0 455 89 0 0 chr1 36283800 36283856 -206380497 - AluS SINE Alu -234 79 24 1571 91 0 0 chr1 36283856 36284054 -206380299 + AluSg/x SINE Alu 100 297 -13 305 335 73 29 chr1 36284725 36285109 -206379244 - HAL1b LINE L1 -739 1654 1288 2273 123 0 0 chr1 36285109 36285411 -206378942 - AluSx SINE Alu -10 302 1 305 335 73 29 chr1 36285411 36285603 -206378750 - HAL1b LINE L1 -1105 1288 65 347 252 184 0 chr1 36286596 36286699 -206377654 - MER94 DNA DNA -11 123 2 248 284 0 19 chr1 36286914 36286994 -206377359 + MIR3 SINE MIR 96 156 -52 217 352 78 7 chr1 36287685 36287827 -206376526 + MIR SINE MIR 21 172 -90 323 313 69 44 chr1 36290078 36290238 -206374115 + L2 LINE L2 3090 3253 -19 2556 161 139 5 chr1 36290508 36291068 -206373285 - L1MB7 LINE L1 -17 6167 5533 324 237 0 0 chr1 36292257 36292316 -206372037 - L2 LINE L2 -5 3308 3250 392 324 90 54 chr1 36292489 36292767 -206371586 - L2 LINE L2 -12 3260 2973 216 0 0 0 chr1 36292967 36292991 -206371362 + (A)n Simple_repeat Simple_repeat 1 24 0 362 289 33 9 chr1 36294077 36294222 -206370131 + L1ME2 LINE L1 5989 6137 -29 253 232 152 20 chr1 36294936 36295035 -206369318 + MIR SINE MIR 33 144 -118 236 266 0 16 chr1 36295718 36295782 -206368571 + CT-rich Low_complexity Low_complexity 2 64 0 2222 117 0 0 chr1 36297260 36297569 -206366784 + AluSx SINE Alu 1 309 -3 266 245 255 0 chr1 36297721 36297823 -206366530 - MIR SINE MIR -11 251 124 487 259 86 35 chr1 36298113 36298310 -206366043 - MIR SINE MIR -14 248 42 30 0 0 0 chr1 36299600 36299630 -206364723 + AT_rich Low_complexity Low_complexity 1 30 0 289 340 83 23 chr1 36300867 36300909 -206363444 + L1ME3A LINE L1 5666 5704 -466 1626 63 5 0 chr1 36300909 36301115 -206363238 + AluY SINE Alu 92 298 -13 289 340 83 23 chr1 36301115 36301337 -206363016 + L1ME3A LINE L1 5704 5946 -224 351 321 54 9 chr1 36301618 36301730 -206362623 + L2 LINE L2 3181 3297 -16 344 245 50 72 chr1 36301759 36301898 -206362455 - L1ME4a LINE L1 -188 5933 5798 23 33 0 0 chr1 36303503 36303533 -206360820 + AT_rich Low_complexity Low_complexity 1 30 0 1980 171 60 0 chr1 36303610 36303944 -206360409 - MLT1A1 LTR MaLR -11 354 1 317 241 114 100 chr1 36303952 36304172 -206360181 - L1ME4a LINE L1 -74 6047 5825 2168 181 57 14 chr1 36304887 36305329 -206359024 - MLT1C LTR MaLR 0 467 7 240 265 24 24 chr1 36307926 36308009 -206356344 + MIR SINE MIR 174 256 -6 469 308 226 0 chr1 36308056 36308264 -206356089 - MIR SINE MIR 0 262 8 217 286 0 0 chr1 36309272 36309321 -206355032 + MIR SINE MIR 97 145 -63 213 319 32 0 chr1 36309683 36309777 -206354576 + L2 LINE L2 1986 2082 -1232 459 310 85 61 chr1 36309812 36310222 -206354131 + L2 LINE L2 2829 3248 -24 569 326 21 16 chr1 36310595 36310788 -206353565 - MIR SINE MIR -36 226 33 904 160 128 16 chr1 36311848 36312036 -206352317 + MER3 DNA MER1_type 1 209 0 372 325 42 0 chr1 36312948 36313068 -206351285 + MIR SINE MIR 7 131 -131 503 305 0 14 chr1 36313574 36313715 -206350638 + MIR3 SINE MIR 32 170 -38 326 233 25 75 chr1 36313712 36313832 -206350521 - MIR SINE MIR -86 176 63 * 581 270 115 35 chr1 36314175 36314401 -206349952 + MIR SINE MIR 13 256 -6 1171 195 53 52 chr1 36314657 36314869 -206349484 + MLT1A1 LTR MaLR 1 153 -212 2014 76 4 0 chr1 36314869 36315132 -206349221 + AluSp SINE Alu 43 306 -7 1171 195 53 52 chr1 36315132 36315346 -206349007 + MLT1A1 LTR MaLR 153 365 0 188 203 186 0 chr1 36315463 36315522 -206348831 - L2 LINE L2 -44 3269 3200 1044 290 110 16 chr1 36315772 36316334 -206348019 - L1ME3A LINE L1 -219 5951 5337 2767 82 8 19 chr1 36316967 36317346 -206347007 + THE1C LTR MaLR 1 375 0 2044 238 174 57 chr1 36317654 36318882 -206345471 + L1MC4 LINE L1 6443 7713 -95 445 323 114 68 chr1 36318959 36319783 -206344570 + HAL1b LINE L1 16 833 -515 375 332 68 61 chr1 36319791 36320112 -206344241 + L1MEc LINE L1 1978 2304 -4092 2113 133 75 23 chr1 36320112 36320458 -206343895 + THE1B LTR MaLR 1 364 0 375 332 68 61 chr1 36320458 36320561 -206343792 + L1MEc LINE L1 2304 2405 -3991 1060 117 14 122 chr1 36320610 36320833 -206343520 - L1MB3 LINE L1 -312 5871 5669 2285 81 0 0 chr1 36320833 36321130 -206343223 - AluY SINE Alu -14 297 1 1060 117 14 122 chr1 36321130 36321172 -206343181 - L1MB3 LINE L1 -514 5669 5624 237 140 40 0 chr1 36321749 36321799 -206342554 + L1M2 LINE L1 5604 5655 -657 1190 173 0 18 chr1 36321957 36322177 -206342176 + AluJo SINE Alu 87 302 -10 2298 93 3 0 chr1 36322510 36322822 -206341531 + AluSp SINE Alu 1 313 0 363 44 0 0 chr1 36323157 36323202 -206341151 + (TG)n Simple_repeat Simple_repeat 1 45 0 271 240 13 0 chr1 36323244 36323319 -206341034 + L1ME4a LINE L1 5985 6060 -61 1789 131 13 52 chr1 36323360 36323666 -206340687 + AluJb SINE Alu 1 294 -18 325 244 99 8 chr1 36324222 36324353 -206340000 + L1ME4a LINE L1 5338 5480 -641 447 373 0 0 chr1 36324356 36324490 -206339863 + L2 LINE L2 3134 3267 -5 451 280 99 25 chr1 36325397 36325833 -206338520 + L1ME4a LINE L1 5653 6120 -1 520 279 77 40 chr1 36326149 36326371 -206337982 + MIR SINE MIR 13 242 -20 220 283 11 65 chr1 36327352 36327444 -206336909 + L2 LINE L2 3186 3272 0 621 271 77 11 chr1 36327795 36327976 -206336377 + MIR SINE MIR 70 262 0 646 315 50 17 chr1 36329045 36329091 -206335262 - MIR SINE MIR -13 249 206 231 88 0 0 chr1 36329091 36329125 -206335228 + (TA)n Simple_repeat Simple_repeat 2 35 0 2050 106 11 0 chr1 36329125 36329407 -206334946 - AluSc SINE Alu -23 286 2 646 315 50 17 chr1 36329407 36329600 -206334753 - MIR SINE MIR -55 207 1 2257 314 36 18 chr1 36330178 36331016 -206333337 - HERV16 LTR ERVL -2443 3321 2469 1360 308 68 43 chr1 36331021 36332007 -206332346 - HERV16 LTR ERVL -2929 2067 994 1582 131 46 72 chr1 36332238 36332544 -206331809 - AluSx SINE Alu 0 312 15 186 250 21 0 chr1 36332592 36332640 -206331713 + MIR SINE MIR 52 100 -162 2369 97 0 0 chr1 36333819 36334130 -206330223 + AluSq SINE Alu 1 311 -2 351 232 0 24 chr1 36334434 36334516 -206329837 + MIR SINE MIR 61 140 -122 1925 132 0 16 chr1 36335185 36335489 -206328864 - AluSx SINE Alu 0 312 14 482 260 0 0 chr1 36335490 36335594 -206328759 + L2 LINE L2 3210 3313 0 399 283 107 16 chr1 36335747 36335959 -206328394 - MIR SINE MIR -32 230 5 223 71 48 0 chr1 36336086 36336128 -206328225 + T-rich Low_complexity Low_complexity 88 131 0 330 247 174 93 chr1 36336947 36337201 -206327152 - L1ME4a LINE L1 -18 6103 5871 2122 98 0 0 chr1 36337201 36337487 -206326866 - AluSx SINE Alu -24 288 3 330 247 174 93 chr1 36337487 36337791 -206326562 - L1ME4a LINE L1 -250 5871 5500 374 325 70 61 chr1 36338134 36338546 -206325807 + L2 LINE L2 113 528 -2786 1672 265 82 63 chr1 36339541 36340522 -206323831 - HAL1 LINE L1 -709 1798 800 600 243 52 78 chr1 36341676 36341944 -206322409 + MER102a DNA MER1_type 38 298 -32 308 345 147 34 chr1 36342515 36342692 -206321661 - L2 LINE L2 0 3272 3076 1469 230 115 20 chr1 36342782 36343174 -206321179 - LTR16A LTR ERVL -6 444 16 1800 115 7 25 chr1 36343352 36343631 -206320722 + AluSx SINE Alu 28 301 -11 351 272 118 15 chr1 36343776 36343912 -206320441 + MER117 DNA MER1_type 7 156 -41 247 311 89 22 chr1 36343934 36344069 -206320284 - MER5B DNA MER1_type -6 172 29 2026 131 3 0 chr1 36345311 36345608 -206318745 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr1 36346295 36346319 -206318034 + AT_rich Low_complexity Low_complexity 1 24 0 883 299 98 24 chr1 36346351 36347358 -206316995 - L1M4 LINE L1 -2955 3191 2110 372 174 0 0 chr1 36347360 36347429 -206316924 - L1MA9 LINE L1 -306 6006 5938 298 297 42 63 chr1 36347443 36347823 -206316530 - HAL1b LINE L1 -938 410 39 23 0 0 0 chr1 36348322 36348345 -206316008 + AT_rich Low_complexity Low_complexity 1 23 0 692 202 0 0 chr1 36349106 36349230 -206315123 + FLAM_A SINE Alu 11 134 -8 629 304 68 41 chr1 36349450 36349670 -206314683 + MIR SINE MIR 13 238 -24 186 43 0 0 chr1 36349676 36349699 -206314654 + (CTG)n Simple_repeat Simple_repeat 1 23 0 201 39 0 0 chr1 36349701 36349727 -206314626 + (ATG)n Simple_repeat Simple_repeat 1 26 0 257 269 30 15 chr1 36349852 36349919 -206314434 - L2 LINE L2 -12 3301 3234 242 404 12 0 chr1 36349911 36350077 -206314276 + L2 LINE L2 1218 1385 -1929 * 433 284 117 0 chr1 36350088 36350250 -206314103 + MIR SINE MIR 17 197 -65 325 344 58 19 chr1 36350283 36350542 -206313811 + L2 LINE L2 1381 1649 -1665 413 274 26 34 chr1 36350563 36350680 -206313673 - L2 LINE L2 -8 3264 3149 2335 133 16 67 chr1 36350778 36351214 -206313139 - MLT2D LTR ERVL 0 414 1 339 264 147 58 chr1 36351594 36351852 -206312501 + L2 LINE L2 1884 2164 -1150 382 307 60 92 chr1 36351937 36352318 -206312035 + L2 LINE L2 2902 3270 -2 340 335 96 11 chr1 36352318 36352506 -206311847 - MIR SINE MIR -57 205 2 1305 309 44 2 chr1 36352923 36353353 -206311000 - L2 LINE L2 -4 3309 2862 236 171 0 0 chr1 36354890 36354925 -206309428 - MLT1L LTR MaLR -221 394 360 399 41 0 0 chr1 36356131 36356180 -206308173 + (TG)n Simple_repeat Simple_repeat 2 50 0 797 262 31 35 chr1 36356468 36356697 -206307656 + MIR SINE MIR 21 248 -14 2781 96 5 5 chr1 36356782 36357157 -206307196 - THE1C LTR MaLR 0 375 1 767 112 0 124 chr1 36357689 36357867 -206306486 - Tigger1 DNA MER2_type -654 1764 1609 11475 101 30 25 chr1 36357899 36359314 -206305039 - Tigger1 DNA MER2_type -1 2417 991 2164 91 0 13 chr1 36359314 36359612 -206304741 + AluSc SINE Alu 10 303 -6 11475 101 30 25 chr1 36359612 36359921 -206304432 - Tigger1 DNA MER2_type -1427 991 685 472 153 0 0 chr1 36359934 36360006 -206304347 + MER20 DNA MER1_type 106 177 -42 * 4413 150 9 4 chr1 36359999 36360685 -206303668 - Tigger1 DNA MER2_type -1729 689 1 319 188 68 21 chr1 36360736 36360839 -206303514 - L1M4 LINE L1 -3890 2256 2148 4231 147 25 44 chr1 36360853 36361656 -206302697 - L1MB7 LINE L1 -17 6167 5380 834 239 200 49 chr1 36361657 36362126 -206302227 - MLT1H1 LTR MaLR -15 540 1 856 273 151 3 chr1 36362343 36362735 -206301618 + L2 LINE L2 2584 3033 -280 286 204 0 0 chr1 36362754 36362803 -206301550 + L2 LINE L2 3222 3270 -2 2010 113 177 8 chr1 36365560 36365922 -206298431 - MSTA LTR MaLR 0 428 6 565 128 0 0 chr1 36366751 36366837 -206297516 - L1MA6 LINE L1 -106 6194 6109 425 113 0 0 chr1 36366837 36366902 -206297451 + L1MA7 LINE L1 6221 6291 0 24 32 0 0 chr1 36366908 36366939 -206297414 + AT_rich Low_complexity Low_complexity 1 31 0 2247 80 0 26 chr1 36367423 36367734 -206296619 + AluSx SINE Alu 1 303 -9 536 132 66 0 chr1 36368171 36368277 -206296076 - L1MB2 LINE L1 -8 6163 6051 561 254 24 18 chr1 36369186 36369355 -206294998 - L1MB2 LINE L1 -108 6063 5894 243 0 0 0 chr1 36369355 36369382 -206294971 + (T)n Simple_repeat Simple_repeat 1 27 0 7166 48 6 44 chr1 36369583 36370725 -206293628 + SVA Other Other 405 1386 0 195 100 0 0 chr1 36370790 36370820 -206293533 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 557 355 99 53 chr1 36370894 36371172 -206293181 + HAL1 LINE L1 824 1088 -1419 1703 127 3 21 chr1 36371172 36371455 -206292898 + AluSx SINE Alu 34 311 -1 557 355 99 53 chr1 36371455 36371853 -206292500 + HAL1 LINE L1 1088 1531 -976 344 301 53 0 chr1 36371853 36371986 -206292367 + HAL1b LINE L1 475 614 -734 1732 160 80 1 chr1 36372107 36372676 -206291677 - L1M3 LINE L1 -593 5590 4969 26 50 0 0 chr1 36372859 36372899 -206291454 + AT_rich Low_complexity Low_complexity 1 40 0 487 270 185 10 chr1 36374325 36374525 -206289828 + MIR SINE MIR 28 262 0 678 234 22 56 chr1 36375674 36375905 -206288448 - ORSL DNA AcHobo 0 275 53 201 147 0 0 chr1 36377245 36377279 -206287074 + (TG)n Simple_repeat Simple_repeat 1 34 0 1694 176 110 6 chr1 36377357 36377711 -206286642 + MLT2D LTR ERVL 6 442 -22 322 170 11 117 chr1 36377751 36377845 -206286508 + L1MC4 LINE L1 6619 6702 -1340 252 160 0 20 chr1 36377918 36377968 -206286385 + MLT2D LTR ERVL 472 520 0 709 274 58 4 chr1 36377984 36378210 -206286143 + MIR SINE MIR 8 245 -17 386 233 33 22 chr1 36380697 36380787 -206283566 - L2 LINE L2 -1 3271 3181 990 162 137 42 chr1 36380787 36381038 -206283315 + MLT1A1 LTR MaLR 1 305 -85 794 289 86 6 chr1 36381299 36381624 -206282729 - L2 LINE L2 -1919 1395 1045 246 62 0 0 chr1 36381624 36381656 -206282697 + (TA)n Simple_repeat Simple_repeat 1 32 0 784 178 22 4 chr1 36381656 36381878 -206282475 - L1MA4A LINE L1 -72 6231 5945 2007 196 57 77 chr1 36381924 36382071 -206282282 + L1MC5 LINE L1 6644 6792 -1169 2355 56 0 38 chr1 36382071 36382391 -206281962 + AluY SINE Alu 1 308 -3 2007 196 57 77 chr1 36382391 36382890 -206281463 + L1MC5 LINE L1 6792 7277 -684 992 223 50 22 chr1 36383040 36383359 -206280994 + L1MC5 LINE L1 7354 7681 -280 511 219 43 74 chr1 36383902 36384064 -206280289 - MIR SINE MIR -3 259 104 1074 138 0 0 chr1 36384856 36385016 -206279337 + FRAM SINE Alu 1 159 -17 545 282 68 63 chr1 36386795 36387223 -206277130 - L1ME4a LINE L1 -27 6094 5665 2192 82 3 0 chr1 36387223 36387514 -206276839 + AluY SINE Alu 1 292 -19 545 282 68 63 chr1 36387514 36387829 -206276524 - L1ME4a LINE L1 -456 5665 5353 312 120 0 0 chr1 36387978 36388028 -206276325 + (CA)n Simple_repeat Simple_repeat 1 50 0 407 297 92 36 chr1 36388131 36388491 -206275862 + L1ME4a LINE L1 5512 5891 -230 183 234 43 0 chr1 36389124 36389171 -206275182 + MIR SINE MIR 100 148 -114 2421 69 0 0 chr1 36389966 36390272 -206274081 + AluY SINE Alu 1 306 -5 471 325 137 22 chr1 36390382 36390791 -206273562 - L2 LINE L2 0 3313 2858 408 293 17 11 chr1 36390795 36391053 -206273300 + L1ME3A LINE L1 5540 5885 -277 752 285 141 47 chr1 36391361 36391894 -206272459 - L2 LINE L2 -479 2835 2253 205 338 91 39 chr1 36392180 36392334 -206272019 - MIR SINE MIR -72 190 29 200 443 18 0 chr1 36392367 36392480 -206271873 - L2 LINE L2 -203 3069 2955 275 290 228 28 chr1 36392755 36392900 -206271453 - L3 LINE CR1 -169 1408 1235 338 281 123 92 chr1 36393817 36394077 -206270276 - L2 LINE L2 -1 3271 3004 744 264 123 9 chr1 36394142 36394354 -206269999 - MIR SINE MIR -25 237 2 284 229 250 7 chr1 36394360 36394500 -206269853 - MER113 DNA MER1_type? -225 296 123 3442 186 68 3 chr1 36394502 36395208 -206269145 - L1MB4 LINE L1 -1 6179 5428 6555 115 11 21 chr1 36395237 36396427 -206267926 - L1MA8 LINE L1 -1 6290 5112 2800 203 47 0 chr1 36396442 36397112 -206267241 - L1MB4 LINE L1 -756 5428 4730 1102 187 0 32 chr1 36397123 36397342 -206267011 + AluJo SINE Alu 85 296 -16 1286 181 43 17 chr1 36397388 36397687 -206266666 - L1MB4 LINE L1 -1433 4713 4407 21 0 0 0 chr1 36397706 36397727 -206266626 + AT_rich Low_complexity Low_complexity 1 21 0 354 283 119 44 chr1 36397749 36397908 -206266445 + MIR SINE MIR 72 242 -20 468 278 29 28 chr1 36398191 36398371 -206265982 - MIR SINE MIR -69 139 11 1000 71 0 0 chr1 36398525 36398652 -206265701 - AluY SINE Alu -9 302 176 1514 232 78 11 chr1 36398672 36399107 -206265246 + Charlie4a DNA MER1_type 33 496 -12 293 341 31 8 chr1 36399663 36399792 -206264561 - L3 LINE CR1 -472 1105 974 314 315 138 9 chr1 36399793 36399951 -206264402 + MIR SINE MIR 17 191 -71 471 335 23 38 chr1 36399957 36400220 -206264133 - MIR SINE MIR -2 260 2 3544 121 21 31 chr1 36400340 36400503 -206263850 - L1MA7 LINE L1 0 6291 6128 2228 92 3 0 chr1 36400503 36400795 -206263558 + AluSq SINE Alu 1 293 -20 3544 121 21 31 chr1 36400795 36401250 -206263103 - L1MA7 LINE L1 -163 6128 5679 326 290 108 54 chr1 36401755 36402019 -206262334 + L1ME LINE L1 5194 5480 -698 423 271 72 32 chr1 36402059 36402310 -206262043 + L1ME LINE L1 5547 5807 -314 189 355 13 26 chr1 36403059 36403135 -206261218 + MER5A DNA MER1_type 43 117 -72 706 218 48 12 chr1 36404544 36404709 -206259644 - MIR SINE MIR 0 262 92 202 200 140 20 chr1 36405426 36405476 -206258877 - MIR SINE MIR -88 174 119 333 298 95 38 chr1 36405846 36406004 -206258349 + HAL1b LINE L1 683 849 -499 1125 152 47 21 chr1 36406054 36406245 -206258108 - MER20 DNA MER1_type -1 218 23 300 293 50 45 chr1 36406371 36406569 -206257784 + L1MC5 LINE L1 2365 2563 -3977 232 319 72 32 chr1 36406701 36406980 -206257373 + L1MC5 LINE L1 2693 2982 -3558 504 259 228 4 chr1 36407109 36407341 -206257012 + L1MC5 LINE L1 5650 5933 -2269 594 171 9 0 chr1 36407363 36407474 -206256879 + L1PB4 LINE L1 6042 6153 -3 5314 136 8 14 chr1 36407547 36407689 -206256664 + L1PB3 LINE L1 5299 5440 -714 2209 97 3 3 chr1 36407689 36407998 -206256355 + AluSx SINE Alu 1 309 -3 5314 136 8 14 chr1 36407998 36408711 -206255642 + L1PB3 LINE L1 5440 6149 -5 1847 195 51 34 chr1 36408737 36409204 -206255149 + L1MC5 LINE L1 7357 7831 -524 349 289 90 26 chr1 36409359 36409515 -206254838 + MIR SINE MIR 95 260 -2 399 286 27 27 chr1 36409532 36409679 -206254674 - L2 LINE L2 -2796 518 372 826 163 0 15 chr1 36409679 36409814 -206254539 - AluSq/x SINE Alu -179 134 2 2828 93 3 3 chr1 36410389 36410764 -206253589 - THE1C LTR MaLR 0 375 1 559 75 32 65 chr1 36413316 36413409 -206250944 + FLAM_C SINE Alu 37 126 -17 199 140 40 20 chr1 36413796 36413846 -206250507 + A-rich Low_complexity Low_complexity 5 55 0 192 258 94 74 chr1 36416169 36416425 -206247928 + L2 LINE L2 2244 2504 -810 197 279 50 90 chr1 36417895 36418117 -206246236 + L3 LINE CR1 1243 1455 -122 230 200 120 0 chr1 36418344 36418394 -206245959 + MIR SINE MIR 119 174 -88 706 218 48 12 chr1 36419112 36419277 -206245076 + MIR SINE MIR 92 262 0 3985 133 40 32 chr1 36419432 36420109 -206244244 - L1MB3 LINE L1 -173 6010 5329 1438 220 0 3 chr1 36420114 36420427 -206243926 - L1MB3 LINE L1 -866 5280 4969 26 50 0 0 chr1 36420610 36420650 -206243703 + AT_rich Low_complexity Low_complexity 1 40 0 474 270 185 10 chr1 36422077 36422277 -206242076 + MIR SINE MIR 28 262 0 1581 176 3 33 chr1 36422945 36423247 -206241106 + AluJo SINE Alu 1 293 -19 423 258 123 26 chr1 36423610 36423878 -206240475 - L1MC4a LINE L1 -1633 6175 5882 410 321 31 21 chr1 36423878 36424071 -206240282 + MARNA DNA Mariner 244 438 -148 3312 161 54 52 chr1 36424308 36425006 -206239347 + L1MC1 LINE L1 5 704 -5722 * 8543 181 30 40 chr1 36424997 36425186 -206239167 + L1MC1 LINE L1 3352 3541 -3072 1552 175 10 20 chr1 36425186 36425489 -206238864 + AluJb SINE Alu 3 302 -10 8543 181 30 40 chr1 36425489 36425977 -206238376 + L1MC1 LINE L1 3541 4032 -2581 1995 123 0 13 chr1 36425977 36426277 -206238076 + AluSg SINE Alu 1 296 -14 8543 181 30 40 chr1 36426277 36427205 -206237148 + L1MC1 LINE L1 4032 4967 -1646 783 176 0 22 chr1 36427205 36427341 -206237012 - FLAM_C SINE Alu 0 133 1 8543 181 30 40 chr1 36427341 36429030 -206235323 + L1MC1 LINE L1 4967 6613 0 254 88 0 0 chr1 36429528 36429562 -206234791 - MIR3 SINE MIR -49 159 126 727 265 51 10 chr1 36430173 36430369 -206233984 + MIR SINE MIR 58 261 -1 1008 92 0 0 chr1 36430538 36430669 -206233684 - AluJb SINE Alu -181 131 1 1178 250 16 4 chr1 36430829 36431081 -206233272 + MIR SINE MIR 2 256 -6 394 282 18 9 chr1 36431879 36431989 -206232364 + MIR SINE MIR 151 261 -1 880 281 161 18 chr1 36432246 36432793 -206231560 + L2 LINE L2 2164 2788 -526 227 189 0 57 chr1 36433103 36433156 -206231197 + L2 LINE L2 3246 3295 -18 306 294 40 135 chr1 36433669 36433965 -206230388 + L2 LINE L2 2985 3252 -20 330 341 72 0 chr1 36434242 36434380 -206229973 - L2 LINE L2 -8 3305 3158 233 266 25 38 chr1 36434773 36434852 -206229501 - MIR SINE MIR -14 248 171 2282 76 0 32 chr1 36434928 36435243 -206229110 + AluSg SINE Alu 1 305 -5 303 315 79 45 chr1 36435562 36435740 -206228613 - MIR SINE MIR -74 188 5 419 293 8 32 chr1 36435778 36435901 -206228452 + MIR3 SINE MIR 2 121 -87 394 293 141 37 chr1 36436076 36436267 -206228086 - Charlie8 DNA MER1_type -2203 214 4 644 241 80 27 chr1 36436634 36436821 -206227532 + MER117 DNA MER1_type 1 197 0 494 349 71 40 chr1 36436976 36437300 -206227053 - L2 LINE L2 -3 3269 2936 212 274 98 20 chr1 36437403 36437505 -206226848 - L2 LINE L2 -528 2786 2677 201 74 0 0 chr1 36437630 36437657 -206226696 + (TAGG)n Simple_repeat Simple_repeat 4 30 0 612 270 100 50 chr1 36438615 36438867 -206225486 + MIR SINE MIR 6 262 0 218 302 0 0 chr1 36438867 36438930 -206225423 + MIR SINE MIR 200 262 0 624 284 39 29 chr1 36438991 36439195 -206225158 + MIR SINE MIR 1 206 -56 725 292 15 15 chr1 36439246 36439448 -206224905 + MIR SINE MIR 56 257 -5 833 143 0 23 chr1 36439450 36439583 -206224770 + FLAM_C SINE Alu 3 132 -11 233 255 0 0 chr1 36439651 36439698 -206224655 + MIR SINE MIR 216 262 0 539 277 36 24 chr1 36439834 36440000 -206224353 - MIR SINE MIR -74 188 21 268 225 0 150 chr1 36440548 36440668 -206223685 - Charlie7 DNA MER1_type -3 2609 2508 681 245 118 15 chr1 36440669 36440873 -206223480 - MIR SINE MIR -8 254 30 237 153 306 24 chr1 36440882 36440967 -206223386 - Charlie7 DNA MER1_type -2502 110 2 524 289 88 36 chr1 36441003 36441252 -206223101 - L2 LINE L2 -160 3112 2851 360 138 0 0 chr1 36441576 36441634 -206222719 + AluSp/q SINE Alu 238 295 -8 2288 77 3 0 chr1 36444949 36445248 -206219105 + AluSq SINE Alu 1 300 -13 432 265 88 14 chr1 36445255 36445402 -206218951 + MIR SINE MIR 23 180 -82 1664 189 43 37 chr1 36445662 36445891 -206218462 - MSTB LTR MaLR 0 426 193 1307 88 0 88 chr1 36445891 36446117 -206218236 - L1PA13 LINE L1 0 6163 5958 1664 189 43 37 chr1 36446117 36446236 -206218117 - MSTB LTR MaLR -233 193 76 475 188 18 45 chr1 36446645 36446757 -206217596 - LTR67 LTR ERVL -3 554 446 201 74 0 0 chr1 36447017 36447044 -206217309 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 1789 138 33 0 chr1 36447044 36447320 -206217033 - AluJo SINE Alu -27 285 1 590 274 7 0 chr1 36447553 36447706 -206216647 - MIR3 SINE MIR -7 201 48 197 232 36 0 chr1 36448457 36448513 -206215840 - MIR SINE MIR -1 261 204 2085 74 11 11 chr1 36448520 36448790 -206215563 - AluY SINE Alu -2 309 40 2068 123 3 32 chr1 36448795 36449111 -206215242 - AluSx SINE Alu -5 307 1 1768 259 45 54 chr1 36450860 36451433 -206212920 + L2 LINE L2 2153 2718 -596 2010 127 0 31 chr1 36451433 36451774 -206212579 + AluSx SINE Alu 1 332 0 1768 259 45 54 chr1 36451774 36452030 -206212323 + L2 LINE L2 2718 2975 -339 255 133 0 0 chr1 36452081 36452126 -206212227 + (TG)n Simple_repeat Simple_repeat 2 46 0 1019 238 114 42 chr1 36452504 36452687 -206211666 - L2 LINE L2 -18 3295 3127 2647 58 0 0 chr1 36452687 36452996 -206211357 + AluY SINE Alu 1 309 -2 1019 238 114 42 chr1 36452996 36453443 -206210910 - L2 LINE L2 -186 3127 2635 1903 165 0 3 chr1 36453562 36453877 -206210476 + AluJb SINE Alu 1 314 0 248 275 29 0 chr1 36453945 36454014 -206210339 + (TATG)n Simple_repeat Simple_repeat 4 74 0 182 274 48 0 chr1 36454017 36454079 -206210274 + MIR SINE MIR 51 115 -147 1078 269 133 11 chr1 36454114 36454582 -206209771 + MLT1G1 LTR MaLR 3 595 0 288 0 0 0 chr1 36454801 36454833 -206209520 + (TC)n Simple_repeat Simple_repeat 2 33 0 2067 104 0 73 chr1 36455325 36455642 -206208711 - AluSx SINE Alu -8 304 11 1797 174 19 80 chr1 36456008 36456423 -206207930 - MLT1B LTR MaLR 0 390 1 184 175 0 0 chr1 36457012 36457052 -206207301 - L2 LINE L2 -1 3312 3273 625 178 51 4 chr1 36457076 36457273 -206207080 - MLT1D LTR MaLR 0 505 251 7245 115 12 16 chr1 36457312 36457472 -206206881 - L1MA2 LINE L1 0 6304 6145 234 0 0 0 chr1 36457472 36457498 -206206855 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2199 116 0 0 chr1 36457498 36457782 -206206571 - AluSx SINE Alu -28 284 1 7245 115 12 16 chr1 36457782 36458807 -206205546 - L1MA2 LINE L1 -157 6147 5121 693 84 11 0 chr1 36458867 36458962 -206205391 - L1PB1 LINE L1 -3 6148 6053 921 130 0 0 chr1 36458967 36459105 -206205248 + L1PB1 LINE L1 5387 5524 -627 * 1627 88 18 9 chr1 36459096 36459324 -206205029 + L1PB1 LINE L1 5814 6043 -108 * 10980 182 19 8 chr1 36459320 36460607 -206203746 - L1PB1 LINE L1 -441 5710 4440 297 0 0 0 chr1 36460607 36460640 -206203713 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 10980 182 19 8 chr1 36460640 36462094 -206202259 - L1PB1 LINE L1 -1711 4440 2932 382 39 0 0 chr1 36462150 36462201 -206202152 - AluY SINE Alu 0 302 252 * 1181 202 5 0 chr1 36462179 36462392 -206201961 - MLT1D LTR MaLR -291 214 1 1476 242 101 29 chr1 36462725 36463201 -206201152 + LTR33 LTR ERVL 12 521 0 2207 93 21 0 chr1 36463514 36463804 -206200549 + AluSp SINE Alu 1 296 -17 255 224 60 0 chr1 36464640 36464707 -206199646 + MLT1J LTR MaLR 105 175 -336 344 244 111 56 chr1 36464720 36464900 -206199453 + MLT1J LTR MaLR 299 488 -23 340 176 0 99 chr1 36465077 36465168 -206199185 + MLT1L LTR MaLR 1 82 -533 2431 121 25 0 chr1 36465511 36465866 -206198487 - THE1B LTR MaLR 0 364 1 511 298 56 20 chr1 36466081 36466279 -206198074 - MIR SINE MIR -26 236 32 529 291 40 10 chr1 36466324 36466523 -206197830 + MIR SINE MIR 27 231 -31 301 344 33 0 chr1 36467385 36467507 -206196846 + L2 LINE L2 3109 3234 -38 277 364 45 23 chr1 36467641 36467817 -206196536 - MIR3 SINE MIR -14 194 15 354 210 49 0 chr1 36468008 36468089 -206196264 + MIR SINE MIR 79 163 -99 542 313 73 13 chr1 36468241 36468474 -206195879 + MLT1I LTR MaLR 161 407 -2 592 261 83 46 chr1 36468600 36468637 -206195716 - MLT1J LTR MaLR -8 442 408 554 138 0 0 chr1 36468637 36468717 -206195636 + MADE1 DNA Mariner 1 80 0 592 261 83 46 chr1 36468717 36469061 -206195292 - MLT1J LTR MaLR -42 408 46 607 168 5 43 chr1 36469116 36469301 -206195052 + GA-rich Low_complexity Low_complexity 3 180 0 631 270 45 60 chr1 36469318 36469518 -206194835 - MER63A DNA MER1_type -6 204 8 2181 121 7 0 chr1 36470035 36470341 -206194012 - AluSx SINE Alu -4 308 1 205 341 0 22 chr1 36470459 36470550 -206193803 + MIR SINE MIR 20 108 -154 285 250 14 0 chr1 36470770 36470842 -206193511 + L2 LINE L2 3179 3251 -21 196 0 56 56 chr1 36470850 36470886 -206193467 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1897 164 3 3 chr1 36472575 36472880 -206191473 + AluJb SINE Alu 1 305 -7 552 251 139 9 chr1 36473030 36473253 -206191100 - MIR SINE MIR 0 262 11 420 261 0 0 chr1 36473279 36473367 -206190986 + MER5A DNA MER1_type 81 168 -21 211 221 106 62 chr1 36474047 36474160 -206190193 - L2 LINE L2 -1 3312 3195 288 228 25 13 chr1 36474483 36474562 -206189791 + MIR SINE MIR 53 132 -76 2315 183 36 9 chr1 36474855 36475302 -206189051 + MLT1C LTR MaLR 1 459 -8 214 288 17 0 chr1 36475526 36475585 -206188768 + L3b LINE CR1 1278 1337 -246 219 182 23 0 chr1 36475619 36475663 -206188690 - L2 LINE L2 -1 3312 3268 368 258 81 28 chr1 36475773 36475971 -206188382 + MIR SINE MIR 5 259 -3 452 239 70 7 chr1 36476084 36476226 -206188127 - MIR SINE MIR -65 197 47 817 265 14 5 chr1 36476429 36476644 -206187709 - MIR SINE MIR -44 218 2 261 57 0 0 chr1 36476719 36476754 -206187599 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr1 36477378 36477399 -206186954 + AT_rich Low_complexity Low_complexity 1 21 0 716 198 128 12 chr1 36477445 36477617 -206186736 - MIR SINE MIR -59 203 12 1468 181 99 14 chr1 36477789 36478071 -206186282 + AluJo SINE Alu 1 306 -6 2294 102 3 0 chr1 36478183 36478487 -206185866 + AluSq SINE Alu 1 305 -8 490 275 0 8 chr1 36478740 36478860 -206185493 + MIR SINE MIR 35 153 -109 288 297 8 39 chr1 36478928 36479056 -206185297 + MIR SINE MIR 60 183 -79 282 264 36 49 chr1 36479180 36479297 -206185056 + MIR SINE MIR 36 151 -79 209 125 0 0 chr1 36479330 36479362 -206184991 + MIR SINE MIR 225 256 -6 22 35 0 0 chr1 36479898 36479927 -206184426 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 36480029 36480050 -206184303 + GC_rich Low_complexity Low_complexity 1 21 0 429 298 60 82 chr1 36481008 36481324 -206183029 - L2 LINE L2 -27 3245 2937 308 240 306 0 chr1 36482537 36482658 -206181695 + MIR SINE MIR 51 208 -54 204 314 58 16 chr1 36482725 36482846 -206181507 - L2 LINE L2 -1097 2217 2092 364 308 73 65 chr1 36482959 36483313 -206181040 - L2 LINE L2 -1250 2064 1708 550 215 153 57 chr1 36483463 36483691 -206180662 - MIR SINE MIR -12 250 1 1058 185 6 6 chr1 36483700 36483878 -206180475 + MER45A DNA AcHobo 1 178 0 386 132 66 66 chr1 36485011 36485087 -206179266 - MLT1F1 LTR MaLR 0 567 430 222 315 45 0 chr1 36485222 36485311 -206179042 + L2 LINE L2 3174 3266 -6 266 287 139 0 chr1 36485654 36485755 -206178598 + L2 LINE L2 3199 3313 0 21 36 0 0 chr1 36486044 36486072 -206178281 + AT_rich Low_complexity Low_complexity 1 28 0 2165 107 7 7 chr1 36486737 36487047 -206177306 - AluSg SINE Alu 0 310 1 402 312 40 25 chr1 36487720 36487919 -206176434 + MIR SINE MIR 12 213 -49 184 315 183 19 chr1 36488482 36488695 -206175658 - L2 LINE L2 0 3272 3025 430 293 59 70 chr1 36489796 36489956 -206174397 - MIR SINE MIR 0 262 105 1700 182 52 3 chr1 36489956 36490247 -206174106 + AluJo SINE Alu 3 307 -5 430 293 59 70 chr1 36490247 36490342 -206174011 - MIR SINE MIR -157 105 10 1483 206 59 73 chr1 36490777 36490956 -206173397 + MLT1D LTR MaLR 3 183 -322 2695 30 0 0 chr1 36490956 36491252 -206173101 + AluY SINE Alu 1 296 -15 1483 206 59 73 chr1 36491252 36491578 -206172775 + MLT1D LTR MaLR 183 501 -4 829 222 75 48 chr1 36491673 36491925 -206172428 - MIR SINE MIR 0 262 4 6426 246 68 20 chr1 36492058 36494261 -206170092 - L1MEc LINE L1 -2444 3771 1365 2511 69 0 28 chr1 36494261 36494579 -206169774 - AluY SINE Alu -2 309 1 6426 246 68 20 chr1 36494579 36496001 -206168352 - L1MEc LINE L1 -4850 1365 12 378 0 0 0 chr1 36496645 36496687 -206167666 + (TG)n Simple_repeat Simple_repeat 1 42 0 2253 99 0 3 chr1 36497598 36497921 -206166432 + AluSx SINE Alu 1 322 0 368 236 64 36 chr1 36498506 36498616 -206165737 + MIR SINE MIR 5 117 -145 1616 198 74 37 chr1 36498620 36499005 -206165348 - L1M4 LINE L1 -1843 4303 3897 2166 103 3 7 chr1 36499005 36499305 -206165048 + AluSc SINE Alu 1 299 -10 1616 198 74 37 chr1 36499305 36499378 -206164975 - L1M4 LINE L1 -2249 3897 3828 207 0 0 0 chr1 36499391 36499414 -206164939 + (CAA)n Simple_repeat Simple_repeat 2 24 0 296 272 88 0 chr1 36501295 36501431 -206162922 - L1ME4a LINE L1 -6 6115 5968 393 302 171 16 chr1 36501537 36501782 -206162571 - L1ME4a LINE L1 -316 5805 5523 2297 98 0 19 chr1 36502100 36502416 -206161937 + AluSg SINE Alu 1 310 0 235 302 56 79 chr1 36503347 36503473 -206160880 + L1MEd LINE L1 506 628 -5491 754 252 67 67 chr1 36503566 36504089 -206160264 + L1MEd LINE L1 722 1244 -4875 468 205 18 0 chr1 36504198 36504310 -206160043 + L1MEd LINE L1 2123 2236 -3893 406 214 0 22 chr1 36504312 36504401 -206159952 + MER20 DNA MER1_type 1 87 -132 1203 258 61 20 chr1 36504507 36505375 -206158978 + L1MEd LINE L1 2254 3215 -2914 2217 128 0 7 chr1 36505375 36505680 -206158673 + AluSx SINE Alu 2 304 -8 1203 258 61 20 chr1 36505680 36505793 -206158560 + L1MEd LINE L1 3215 3322 -2807 358 232 322 13 chr1 36505980 36506213 -206158140 + L2 LINE L2 3004 3308 -5 1193 309 109 8 chr1 36506650 36507180 -206157173 - L2 LINE L2 -883 2431 1848 2471 77 0 0 chr1 36507441 36507741 -206156612 + AluSc SINE Alu 2 301 -8 1965 70 60 46 chr1 36507744 36508029 -206156324 + AluY SINE Alu 1 289 -22 1658 273 94 19 chr1 36508115 36509193 -206155160 - L1ME3A LINE L1 -219 5951 4800 669 189 0 63 chr1 36509194 36509353 -206155000 + MER63 DNA MER1_type 12 786 -276 270 194 42 0 chr1 36509452 36509524 -206154829 - L1ME3A LINE L1 -1444 4702 4628 2406 76 0 0 chr1 36509529 36509820 -206154533 - AluY SINE Alu -20 291 1 198 0 0 0 chr1 36509903 36509925 -206154428 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 227 298 15 38 chr1 36509970 36510101 -206154252 - L1MC/D LINE L1 -1871 5937 5810 999 255 29 0 chr1 36510179 36510422 -206153931 + MIR SINE MIR 11 260 -2 816 279 109 34 chr1 36510469 36510917 -206153436 - L1MC/D LINE L1 -2052 5756 5275 293 358 72 24 chr1 36511543 36511750 -206152603 - MIR SINE MIR 0 262 46 343 210 50 0 chr1 36512315 36512415 -206151938 - L1ME4a LINE L1 -43 6078 5974 24 53 0 0 chr1 36512850 36512888 -206151465 + AT_rich Low_complexity Low_complexity 1 38 0 243 275 133 1 chr1 36513276 36513381 -206150972 + MIR SINE MIR 27 131 -77 409 211 202 9 chr1 36513418 36513532 -206150821 - MER5A DNA MER1_type -7 182 47 754 255 48 5 chr1 36513690 36513898 -206150455 - MIR SINE MIR -34 228 12 367 234 26 88 chr1 36515140 36515367 -206148986 - L1MC4 LINE L1 -1 8041 7829 261 0 0 0 chr1 36515386 36515415 -206148938 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2153 194 124 22 chr1 36515420 36515966 -206148387 - L1ME2 LINE L1 -10 6154 5553 278 252 13 113 chr1 36515966 36515995 -206148358 - MER5B DNA MER1_type -35 143 113 1672 151 35 51 chr1 36515995 36516306 -206148047 + AluJo SINE Alu 1 306 -6 278 252 13 113 chr1 36516306 36516435 -206147918 - MER5B DNA MER1_type -65 113 1 367 268 134 0 chr1 36516624 36516721 -206147632 + MIR SINE MIR 37 146 -62 279 173 0 0 chr1 36518657 36518709 -206145644 + (TG)n Simple_repeat Simple_repeat 1 52 0 488 152 32 29 chr1 36519633 36519760 -206144593 + MER5A DNA MER1_type 1 189 0 182 265 0 0 chr1 36519761 36519795 -206144558 - MER5A DNA MER1_type -107 82 49 494 275 53 6 chr1 36519995 36520166 -206144187 + MER58C DNA MER1_type 22 200 -15 640 259 6 17 chr1 36520700 36520874 -206143479 - L3 LINE CR1 -91 1486 1315 234 91 0 0 chr1 36521772 36521805 -206142548 + (T)n Simple_repeat Simple_repeat 1 33 0 252 105 0 0 chr1 36622081 36622119 -206042234 - L1MA3 LINE L1 -5 6300 6263 1030 158 15 71 chr1 36622284 36622359 -206041994 + MER5A DNA MER1_type 2 80 -109 2456 100 0 3 chr1 36622359 36622669 -206041684 + AluSq SINE Alu 1 309 -4 1030 158 15 71 chr1 36622669 36622789 -206041564 + MER5A DNA MER1_type 80 186 -3 703 216 30 0 chr1 36623333 36623467 -206040886 + MIR SINE MIR 47 184 -78 455 221 66 33 chr1 36623492 36623614 -206040739 + MIR SINE MIR 68 193 -69 2295 107 13 10 chr1 36623615 36623925 -206040428 - AluSx SINE Alu -1 311 1 528 271 29 29 chr1 36624099 36624269 -206040084 + MIR SINE MIR 2 171 -91 3869 256 125 38 chr1 36624400 36626201 -206038152 + L2 LINE L2 1275 3270 -43 323 291 7 78 chr1 36626253 36626305 -206038048 + MIR SINE MIR 117 171 -91 2459 101 0 0 chr1 36626305 36626611 -206037742 - AluSg SINE Alu -4 306 1 323 291 7 78 chr1 36626611 36626699 -206037654 + MIR SINE MIR 171 247 -15 422 301 14 34 chr1 36627083 36627229 -206037124 + MIR SINE MIR 108 250 -12 396 270 60 76 chr1 36627294 36627386 -206036967 + MIR SINE MIR 32 121 -141 2510 83 3 13 chr1 36627386 36627699 -206036654 - AluSq SINE Alu -2 311 2 396 270 60 76 chr1 36627699 36627791 -206036562 + MIR SINE MIR 121 213 -49 27 29 0 0 chr1 36627819 36627853 -206036500 + AT_rich Low_complexity Low_complexity 1 34 0 200 139 0 93 chr1 36628099 36628142 -206036211 + L2 LINE L2 3233 3271 -1 276 330 102 25 chr1 36628686 36628883 -206035470 - L2 LINE L2 -683 2631 2420 3802 126 44 16 chr1 36628936 36628947 -206035406 - L1MC1 LINE L1 -429 5904 5895 2183 129 0 7 chr1 36628947 36629257 -206035096 - AluSq SINE Alu -1 312 5 3802 126 44 16 chr1 36629257 36629935 -206034418 - L1MC1 LINE L1 -438 5895 5186 2274 116 0 13 chr1 36629935 36630245 -206034108 - AluSx SINE Alu -4 308 3 3802 126 44 16 chr1 36630245 36630334 -206034019 - L1MC1 LINE L1 -1147 5186 5101 586 260 68 7 chr1 36630347 36630493 -206033860 + L2 LINE L2 3112 3266 -47 1198 257 142 52 chr1 36630605 36631395 -206032958 + L1MEd LINE L1 285 1145 -4974 253 167 10 128 chr1 36631399 36631501 -206032852 - LTR50 LTR ERVL -17 771 667 432 305 17 0 chr1 36631772 36631890 -206032463 + MIR3 SINE MIR 68 187 -21 1243 279 90 7 chr1 36632225 36632765 -206031588 + L1ME2 LINE L1 5369 5952 -210 347 210 48 156 chr1 36632974 36633175 -206031178 + L1MC5 LINE L1 7324 7545 -416 686 233 0 0 chr1 36633175 36633308 -206031045 + FLAM_C SINE Alu 1 133 0 347 210 48 156 chr1 36633308 36633353 -206031000 + L1MC5 LINE L1 7545 7593 -368 2192 120 0 3 chr1 36633353 36633645 -206030708 + AluSx SINE Alu 2 292 -20 347 210 48 156 chr1 36633645 36633858 -206030495 + L1MC5 LINE L1 7593 7734 -227 225 0 0 0 chr1 36633925 36633950 -206030403 + (CA)n Simple_repeat Simple_repeat 1 25 0 2245 132 3 0 chr1 36634164 36634475 -206029878 - AluSx SINE Alu 0 312 1 2141 129 0 3 chr1 36635450 36635744 -206028609 + AluSx SINE Alu 1 293 -19 270 216 167 10 chr1 36636038 36636140 -206028213 + L1ME4a LINE L1 5816 5933 -188 310 330 0 11 chr1 36636734 36636825 -206027528 - MIR SINE MIR -81 127 38 435 262 19 9 chr1 36637101 36637208 -206027145 + MIR SINE MIR 36 143 -119 436 244 92 43 chr1 36637260 36637424 -206026929 + MIR SINE MIR 8 179 -83 2885 121 2 46 chr1 36638139 36638377 -206025976 + Tigger2a DNA MER2_type 1 211 -2497 2233 123 0 0 chr1 36638377 36638669 -206025684 + AluSx SINE Alu 1 292 -20 2885 121 2 46 chr1 36638669 36638884 -206025469 + Tigger2a DNA MER2_type 211 434 0 321 226 157 25 chr1 36638884 36639088 -206025265 - L1ME4a LINE L1 -21 6100 5870 228 246 0 72 chr1 36639591 36639660 -206024693 + MIR SINE MIR 89 152 -110 254 342 18 9 chr1 36640069 36640180 -206024173 - MIR SINE MIR -65 143 32 374 278 150 9 chr1 36640205 36640399 -206023954 + MIR SINE MIR 34 250 -12 2060 156 6 13 chr1 36640480 36640794 -206023559 + AluJo SINE Alu 1 312 0 291 316 160 11 chr1 36641764 36641951 -206022402 + L2 LINE L2 2840 3054 -218 211 191 0 56 chr1 36642131 36642266 -206022087 + (CAGCC)n Simple_repeat Simple_repeat 1 127 0 413 237 4 185 chr1 36642647 36642879 -206021474 + MER91B DNA MER1_type 1 190 0 4433 101 25 28 chr1 36642936 36642982 -206021371 + L1MA8 LINE L1 5570 5615 -676 1966 156 0 0 chr1 36642982 36643271 -206021082 + AluSx SINE Alu 5 293 -19 4433 101 25 28 chr1 36643271 36643948 -206020405 + L1MA8 LINE L1 5615 6291 0 425 267 149 56 chr1 36644190 36644238 -206020115 - MIR SINE MIR -14 248 206 1080 219 37 0 chr1 36644238 36644453 -206019900 - MER58A DNA MER1_type 0 224 2 425 267 149 56 chr1 36644453 36644599 -206019754 - MIR SINE MIR -56 206 36 399 311 122 0 chr1 36644727 36644891 -206019462 - MIR SINE MIR -56 206 23 892 153 0 15 chr1 36645065 36645202 -206019151 - AluJo SINE Alu -177 135 1 21 0 0 0 chr1 36645202 36645223 -206019130 + AT_rich Low_complexity Low_complexity 1 21 0 613 276 191 5 chr1 36645230 36645440 -206018913 - MIR SINE MIR -12 250 2 561 301 198 47 chr1 36645471 36646512 -206017841 - L2 LINE L2 -18 3295 2090 2254 107 0 3 chr1 36646782 36647072 -206017281 + AluSg SINE Alu 1 289 -21 2391 86 7 0 chr1 36647085 36647387 -206016966 + AluSp SINE Alu 1 304 -9 424 317 50 55 chr1 36647605 36647807 -206016546 - L1ME3A LINE L1 -8 6162 5962 716 289 89 23 chr1 36647935 36648402 -206015951 - L1ME3A LINE L1 -353 5809 5300 398 221 14 107 chr1 36648706 36648744 -206015609 - MIR SINE MIR -33 229 189 2243 121 0 13 chr1 36648744 36648922 -206015431 - AluSg SINE Alu -1 309 135 2125 130 7 3 chr1 36648922 36649222 -206015131 - AluSg SINE Alu -9 301 1 2243 121 0 13 chr1 36649222 36649356 -206014997 - AluSg SINE Alu -175 135 1 398 221 14 107 chr1 36649356 36649457 -206014896 - MIR SINE MIR -73 189 103 1069 246 188 34 chr1 36649490 36650002 -206014351 - L2 LINE L2 0 3313 2741 773 171 201 0 chr1 36651176 36651340 -206013013 + L1MB7 LINE L1 5929 6125 -59 2472 71 0 0 chr1 36651346 36651642 -206012711 - AluY SINE Alu -15 296 1 2146 107 48 0 chr1 36651642 36651932 -206012421 - AluSq SINE Alu -9 304 1 352 164 74 59 chr1 36652104 36652205 -206012148 + MIR SINE MIR 73 172 -63 2187 121 3 0 chr1 36652412 36652701 -206011652 + AluSx SINE Alu 1 290 -22 668 193 0 36 chr1 36653070 36653210 -206011143 + L2 LINE L2 3179 3313 0 541 308 139 51 chr1 36653521 36653930 -206010423 - L2 LINE L2 0 3272 2828 266 245 118 10 chr1 36654087 36654189 -206010164 + MIR SINE MIR 68 180 -82 1084 222 10 5 chr1 36654514 36654721 -206009632 - MIR SINE MIR -25 237 30 384 283 143 26 chr1 36655484 36655714 -206008639 - L2 LINE L2 -457 2857 2601 227 333 0 67 chr1 36655694 36655829 -206008524 + MIR SINE MIR 80 205 -57 * 206 250 104 0 chr1 36655928 36655976 -206008377 - MIR SINE MIR -145 117 65 188 268 167 25 chr1 36656068 36656266 -206008087 - L2 LINE L2 -243 3029 2804 219 276 40 0 chr1 36656308 36656384 -206007969 - L2 LINE L2 -601 2713 2635 659 291 62 26 chr1 36656610 36656837 -206007516 + MIR SINE MIR 22 256 -6 661 184 160 66 chr1 36658222 36658275 -206006078 - L1MB7 LINE L1 -20 6233 6186 2094 114 6 50 chr1 36658275 36658592 -206005761 + AluSx SINE Alu 3 305 -7 661 184 160 66 chr1 36658592 36658750 -206005603 - L1MB7 LINE L1 -67 6186 6002 8450 63 6 1 chr1 36659051 36660941 -206003412 + L1PA6 LINE L1 4223 6141 -13 3127 199 102 105 chr1 36660952 36661279 -206003074 - L1MB7 LINE L1 -743 5472 5145 1024 225 0 0 chr1 36661279 36661452 -206002901 - FAM SINE Alu -2 173 1 3127 199 102 105 chr1 36661452 36661966 -206002387 - L1MB7 LINE L1 -1070 5145 4631 2181 134 0 7 chr1 36661966 36662273 -206002080 - AluSx SINE Alu -7 305 1 3127 199 102 105 chr1 36662273 36662406 -206001947 - L1MB7 LINE L1 -1584 4631 4499 1833 182 0 3 chr1 36662406 36662703 -206001650 - AluJo SINE Alu -16 296 1 3127 199 102 105 chr1 36662703 36663274 -206001079 - L1MB7 LINE L1 -1716 4499 4053 * 4958 168 23 25 chr1 36663261 36665047 -205999306 + L1MA9 LINE L1 4480 6274 -38 4933 239 58 14 chr1 36665067 36665295 -205999058 - L1MB7 LINE L1 -2140 4075 3859 2407 64 10 7 chr1 36665295 36665591 -205998762 - AluY SINE Alu -14 297 1 4933 239 58 14 chr1 36665591 36666773 -205997580 - L1MB7 LINE L1 -2356 3859 2533 2141 135 68 14 chr1 36666773 36667143 -205997210 - MLT1B LTR MaLR 0 390 1 4933 239 58 14 chr1 36667143 36667541 -205996812 - L1MB7 LINE L1 -3682 2533 2154 744 190 0 36 chr1 36667551 36667688 -205996665 - FRAM SINE Alu -6 170 39 3513 239 34 33 chr1 36667728 36667849 -205996504 - L1MEc LINE L1 -4366 2030 1911 2123 104 18 0 chr1 36667849 36668170 -205996183 - AluSq SINE Alu 0 326 1 3513 239 34 33 chr1 36668170 36669212 -205995141 - L1MEc LINE L1 -4485 1911 865 1963 168 0 13 chr1 36669219 36669522 -205994831 - AluJb SINE Alu -13 299 1 611 158 62 89 chr1 36669534 36669680 -205994673 - FLAM_C SINE Alu 0 143 2 2529 239 87 6 chr1 36669681 36670379 -205993974 - L1MEc LINE L1 -5528 868 114 717 140 18 0 chr1 36670379 36670493 -205993860 + Tigger3b DNA MER2_type 2 117 -1114 2222 185 35 78 chr1 36670493 36671070 -205993283 - MLT2B3 LTR ERVL 0 554 3 * 6278 111 24 12 chr1 36671070 36671476 -205992877 + Tigger3b DNA MER2_type 119 519 -2509 2232 116 0 0 chr1 36671476 36671808 -205992545 - AluSx SINE Alu 0 332 1 6278 111 24 12 chr1 36671808 36672428 -205991925 + Tigger3b DNA MER2_type 519 1158 -73 2048 88 0 0 chr1 36672493 36672742 -205991611 - AluSg SINE Alu -61 249 1 368 121 0 0 chr1 36673028 36673095 -205991258 - Alu SINE Alu -246 53 1 617 296 165 19 chr1 36673133 36673400 -205990953 + L2 LINE L2 2918 3223 -49 224 286 18 0 chr1 36673458 36673514 -205990839 + L2 LINE L2 3256 3312 -1 * 306 265 57 11 chr1 36673512 36673600 -205990753 + MIR SINE MIR 76 166 -55 1198 181 9 18 chr1 36673650 36673871 -205990482 - MER20 DNA MER1_type 0 219 1 509 279 91 25 chr1 36674438 36674635 -205989718 + MIR SINE MIR 53 262 0 2477 88 0 3 chr1 36674669 36674977 -205989376 - AluSp SINE Alu -6 307 1 293 229 56 108 chr1 36675020 36675213 -205989140 + MIR SINE MIR 20 212 -50 270 306 20 61 chr1 36677337 36677484 -205986869 - L2 LINE L2 -33 3239 3099 1881 174 0 0 chr1 36677506 36677787 -205986566 + AluJo SINE Alu 1 281 -31 2062 147 0 3 chr1 36677813 36678113 -205986240 + AluSx SINE Alu 7 305 -7 524 217 46 40 chr1 36678293 36678445 -205985908 + MIR3 SINE MIR 7 159 -49 1728 210 121 65 chr1 36678450 36679170 -205985183 - MER20B DNA MER1_type -3 780 21 193 245 0 0 chr1 36679171 36679220 -205985133 + MIR3 SINE MIR 154 202 -6 266 237 151 21 chr1 36679233 36679326 -205985027 - L2 LINE L2 -5 3267 3163 354 180 140 20 chr1 36679332 36679432 -205984921 - MIR3 SINE MIR -27 181 70 308 331 140 0 chr1 36680130 36680287 -205984066 + MIR3 SINE MIR 23 201 -7 325 333 25 0 chr1 36680999 36681119 -205983234 - LTR67 LTR ERVL -4 553 431 256 224 17 0 chr1 36681330 36681388 -205982965 - LTR67 LTR ERVL -385 172 114 378 294 31 55 chr1 36681898 36682061 -205982292 - MIR SINE MIR -36 226 68 451 311 62 6 chr1 36682168 36682329 -205982024 + MIR SINE MIR 13 182 -80 2863 177 39 7 chr1 36682600 36682825 -205981528 - LTR64 LTR ERVK 0 558 342 2313 72 10 7 chr1 36682825 36683118 -205981235 + AluSp SINE Alu 3 296 -17 2863 177 39 7 chr1 36683118 36683433 -205980920 - LTR64 LTR ERVK -216 342 1 251 301 63 28 chr1 36684306 36684473 -205979880 - MIR SINE MIR -70 192 5 312 281 22 82 chr1 36684659 36684794 -205979559 + MIR3 SINE MIR 82 208 0 783 77 10 0 chr1 36685398 36685502 -205978851 - L1PA10 LINE L1 -3 6165 6061 398 250 213 0 chr1 36685743 36685879 -205978474 - MIR3 SINE MIR -13 195 31 253 236 181 24 chr1 36686165 36686292 -205978061 - MIR3 SINE MIR -41 167 21 282 293 47 47 chr1 36686954 36687104 -205977249 + MIR3 SINE MIR 30 179 -29 186 227 98 98 chr1 36687662 36687794 -205976559 + L2 LINE L2 2932 3063 -209 312 365 19 0 chr1 36688312 36688468 -205975885 + L2 LINE L2 2226 2384 -930 468 328 79 33 chr1 36688468 36688937 -205975416 + L2 LINE L2 2685 3270 -2 505 263 36 7 chr1 36689207 36689344 -205975009 + MIR SINE MIR 24 164 -98 2497 96 0 0 chr1 36689376 36689688 -205974665 - AluSq SINE Alu -1 312 1 200 298 21 0 chr1 36689715 36689762 -205974591 - L2 LINE L2 -20 3252 3205 192 293 17 17 chr1 36690571 36690629 -205973724 - MIR SINE MIR -108 100 43 348 263 74 11 chr1 36690818 36690913 -205973440 - MIR SINE MIR -62 146 46 231 36 0 0 chr1 36690933 36690961 -205973392 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr1 36691117 36691144 -205973209 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1667 169 0 41 chr1 36691144 36691439 -205972914 - AluJo SINE Alu -27 285 3 223 261 22 43 chr1 36692043 36692135 -205972218 + L2 LINE L2 2490 2579 -735 3430 121 33 23 chr1 36692238 36692760 -205971593 + MER1A DNA MER1_type 1 527 0 845 264 25 17 chr1 36692806 36693041 -205971312 - MIR SINE MIR -8 254 18 1059 171 26 18 chr1 36693091 36693319 -205971034 + MER96B DNA MER1_type? 133 362 -55 847 292 92 15 chr1 36693325 36693726 -205970627 + L2 LINE L2 2835 3266 -47 197 246 88 0 chr1 36694081 36694138 -205970215 - MIR3 SINE MIR -19 189 128 779 243 159 17 chr1 36694216 36694517 -205969836 - L2 LINE L2 -2 3311 2968 434 216 22 86 chr1 36694551 36694690 -205969663 + MLT1J LTR MaLR 262 391 -120 559 234 7 22 chr1 36694761 36694898 -205969455 + MER63A DNA MER1_type 72 206 -4 384 304 136 59 chr1 36695567 36696008 -205968345 + L2 LINE L2 2373 2847 -467 924 191 106 0 chr1 36696018 36696206 -205968147 - MER3 DNA MER1_type -1 208 1 201 250 0 0 chr1 36696247 36696291 -205968062 + L2 LINE L2 2998 3041 -231 1929 123 31 24 chr1 36696391 36696684 -205967669 + AluSx SINE Alu 1 295 -17 304 172 0 0 chr1 36696701 36696759 -205967594 + Alu SINE Alu 245 302 0 253 191 24 0 chr1 36696759 36696801 -205967552 + L2 LINE L2 3141 3183 -89 630 203 76 66 chr1 36697087 36697284 -205967069 + MIR SINE MIR 44 242 -20 349 307 22 0 chr1 36697383 36697520 -205966833 - MIR3 SINE MIR -15 193 54 673 257 59 21 chr1 36697664 36697851 -205966502 - MIR SINE MIR -56 206 13 195 296 19 0 chr1 36697878 36697932 -205966421 - L2 LINE L2 -8 3305 3251 319 235 80 123 chr1 36698085 36698125 -205966228 + MIR SINE MIR 108 148 -114 2233 128 0 0 chr1 36698125 36698430 -205965923 - AluSx SINE Alu -7 305 1 319 235 80 123 chr1 36698430 36698551 -205965802 + MIR SINE MIR 148 262 0 206 333 25 25 chr1 36699263 36699344 -205965009 + MIR SINE MIR 164 244 -18 315 213 0 0 chr1 36699736 36699811 -205964542 + (TG)n Simple_repeat Simple_repeat 1 75 0 201 311 0 49 chr1 36699956 36700017 -205964336 + MIR SINE MIR 40 97 -165 1704 151 12 72 chr1 36700021 36700353 -205964000 - AluJo SINE Alu 0 312 1 389 178 33 0 chr1 36700368 36700458 -205963895 - L1MB4 LINE L1 -2 6178 6086 1945 172 0 19 chr1 36700518 36700832 -205963521 - AluJb SINE Alu -4 308 1 413 215 51 0 chr1 36700840 36700919 -205963434 + MIR SINE MIR 110 192 -70 243 305 0 0 chr1 36701234 36701329 -205963024 - L1MC4 LINE L1 -1334 6708 6614 243 234 0 43 chr1 36701297 36701391 -205962962 - L1MC4 LINE L1 -1339 6703 6614 1957 106 31 38 chr1 36701396 36701688 -205962665 - AluSx SINE Alu -22 290 1 285 200 0 33 chr1 36701856 36701916 -205962437 + MIR3 SINE MIR 122 179 -29 585 286 71 34 chr1 36701934 36702172 -205962181 + MIR SINE MIR 1 247 -15 822 257 52 5 chr1 36703069 36703279 -205961074 + MIR SINE MIR 37 256 -6 543 221 0 0 chr1 36703372 36703499 -205960854 + (CA)n Simple_repeat Simple_repeat 2 128 0 386 287 66 30 chr1 36703637 36703804 -205960549 - MIR SINE MIR -10 252 80 302 291 0 0 chr1 36703853 36703932 -205960421 - L2 LINE L2 -209 3063 2985 1060 185 25 30 chr1 36703938 36704138 -205960215 + MER20 DNA MER1_type 7 205 -14 564 302 167 0 chr1 36704154 36704369 -205959984 - MIR SINE MIR -4 258 8 238 248 137 46 chr1 36704424 36704577 -205959776 + MIR3 SINE MIR 35 201 -7 501 256 43 37 chr1 36705328 36705492 -205958861 + MIR3 SINE MIR 21 185 -23 430 260 40 0 chr1 36705779 36705879 -205958474 - L3 LINE CR1 -71 1506 1403 266 309 36 18 chr1 36705959 36706069 -205958284 - L2 LINE L2 -1 3271 3160 487 276 0 32 chr1 36706142 36706298 -205958055 + MER103 DNA DNA 3 153 -13 216 0 0 0 chr1 36706334 36706358 -205957995 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 239 267 67 0 chr1 36706364 36706439 -205957914 - L2 LINE L2 -214 3058 2979 283 206 22 98 chr1 36707163 36707347 -205957006 + (CCCCG)n Simple_repeat Simple_repeat 5 174 0 279 0 0 0 chr1 36708949 36708980 -205955373 + (TG)n Simple_repeat Simple_repeat 2 32 0 233 313 0 23 chr1 36709046 36709177 -205955176 - L2 LINE L2 -290 2982 2855 376 275 44 50 chr1 36709752 36709912 -205954441 + MLT1L LTR MaLR 15 173 -442 341 230 14 0 chr1 36709905 36709979 -205954374 + MLT1L LTR MaLR 124 198 -417 * 260 235 281 50 chr1 36710070 36710308 -205954045 + MLT1L LTR MaLR 296 615 0 213 282 200 9 chr1 36710426 36710536 -205953817 - L2 LINE L2 -1 3271 3141 310 297 30 10 chr1 36710572 36710673 -205953680 - MIR SINE MIR -48 214 112 486 308 206 22 chr1 36710682 36711097 -205953256 + MLT1J2 LTR MaLR 1 428 -22 2087 126 0 0 chr1 36711126 36711428 -205952925 - AluSx SINE Alu -10 302 1 2179 108 0 0 chr1 36711572 36711869 -205952484 - AluSx SINE Alu -15 297 1 2890 196 14 36 chr1 36712366 36712872 -205951481 - MER82 DNA MER2_type -1 652 158 1908 117 7 3 chr1 36712872 36713174 -205951179 + AluSq SINE Alu 1 303 0 2890 196 14 36 chr1 36713174 36713253 -205951100 - MER82 DNA MER2_type -495 158 79 488 249 50 50 chr1 36713397 36713578 -205950775 - MIR SINE MIR -17 245 65 206 337 46 29 chr1 36713728 36713903 -205950450 + L2 LINE L2 1314 1491 -1823 188 348 99 34 chr1 36713967 36714260 -205950093 + L2 LINE L2 1487 1798 -1516 1259 236 103 51 chr1 36714888 36715355 -205948998 - LTR16C LTR ERVL 0 491 1 213 276 17 0 chr1 36715452 36715510 -205948843 + GA-rich Low_complexity Low_complexity 3 61 0 847 307 30 23 chr1 36715612 36715915 -205948438 - ERVL LTR ERVL -711 5053 4749 2066 93 11 0 chr1 36715959 36716262 -205948091 + AluSg SINE Alu 1 306 0 191 151 0 151 chr1 36716369 36716422 -205947931 - L2 LINE L2 -2099 1215 1171 2223 314 45 19 chr1 36716551 36717512 -205946841 - ERVL LTR ERVL -1322 4332 3347 333 247 12 12 chr1 36717544 36717625 -205946728 + LTR50 LTR ERVL 3 83 -712 282 56 0 0 chr1 36717641 36717677 -205946676 + (TA)n Simple_repeat Simple_repeat 2 37 0 239 87 0 0 chr1 36717677 36717723 -205946630 - LTR66 LTR ERVL -171 439 394 1153 349 14 6 chr1 36717775 36718532 -205945821 - ERVL LTR ERVL -3420 1576 1251 1192 225 176 5 chr1 36718666 36719264 -205945089 + LTR50 LTR ERVL 3 787 -8 563 311 37 86 chr1 36719286 36719487 -205944866 - ERVL LTR ERVL -3957 1039 869 2016 122 14 0 chr1 36719487 36719782 -205944571 - AluSx SINE Alu 0 312 14 563 311 37 86 chr1 36719782 36720011 -205944342 - ERVL LTR ERVL -4127 869 630 402 296 85 40 chr1 36720497 36720696 -205943657 - LTR16C LTR ERVL -96 395 188 272 256 146 0 chr1 36720821 36720903 -205943450 + L1MD2 LINE L1 6256 6349 -10 261 203 0 16 chr1 36720932 36720970 -205943383 + (TA)n Simple_repeat Simple_repeat 2 40 -24 252 0 0 0 chr1 36720970 36720998 -205943355 + (CA)n Simple_repeat Simple_repeat 1 28 0 261 203 0 16 chr1 36720998 36721023 -205943330 + (TA)n Simple_repeat Simple_repeat 40 64 0 371 363 74 28 chr1 36721298 36721513 -205942840 + L1MEd LINE L1 535 759 -5360 435 324 101 52 chr1 36721538 36721943 -205942410 - LTR16A LTR ERVL -8 442 18 410 222 135 52 chr1 36721983 36722213 -205942140 + L1MEd LINE L1 817 1065 -5054 492 234 89 132 chr1 36722218 36722242 -205942111 + MIR SINE MIR 1 24 -238 1852 139 17 7 chr1 36722242 36722543 -205941810 + AluJb SINE Alu 1 304 -8 492 234 89 132 chr1 36722543 36722775 -205941578 + MIR SINE MIR 24 246 -16 406 287 45 25 chr1 36722777 36722979 -205941374 + L1MEd LINE L1 1052 1257 -4862 250 264 189 40 chr1 36723358 36723559 -205940794 - L2 LINE L2 -144 3128 2898 239 0 0 31 chr1 36723826 36723858 -205940495 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1888 93 14 18 chr1 36723860 36724139 -205940214 - AluSx SINE Alu -32 280 3 243 295 289 18 chr1 36724483 36724649 -205939704 - L3 LINE CR1 -108 1469 1259 585 232 40 28 chr1 36724763 36724940 -205939413 + MIR SINE MIR 41 219 -43 199 314 0 0 chr1 36724932 36724983 -205939370 - MIR SINE MIR 0 262 212 * 212 345 152 0 chr1 36725077 36725222 -205939131 + MIR SINE MIR 48 214 -48 487 290 122 51 chr1 36726369 36726684 -205937669 - L2 LINE L2 -1 3271 2927 874 205 102 19 chr1 36726684 36726889 -205937464 + MER58A DNA MER1_type 2 223 -1 487 290 122 51 chr1 36726889 36726925 -205937428 - L2 LINE L2 -345 2927 2895 280 194 0 69 chr1 36727334 36727406 -205936947 - MER33 DNA MER1_type 0 324 258 823 192 19 83 chr1 36727472 36727738 -205936615 - MER33 DNA MER1_type -75 249 1 348 252 151 17 chr1 36727790 36727909 -205936444 + L2 LINE L2 3176 3310 -3 201 364 64 21 chr1 36728148 36728384 -205935969 + L2 LINE L2 2414 2659 -655 1896 218 58 73 chr1 36728393 36728943 -205935410 - MLT1F1 LTR MaLR 0 567 1 2087 114 3 0 chr1 36728988 36729286 -205935067 + AluSq SINE Alu 1 299 -14 3074 150 24 19 chr1 36729386 36729958 -205934395 - LTR51 LTR ERV1 0 671 2 198 297 0 99 chr1 36730052 36730143 -205934210 + L2 LINE L2 2933 3014 -258 264 229 14 43 chr1 36730263 36730333 -205934020 + L2 LINE L2 2304 2371 -943 229 292 100 39 chr1 36730553 36730683 -205933670 + MIR3 SINE MIR 3 140 -68 756 221 66 74 chr1 36730687 36730755 -205933598 - MIR SINE MIR -3 259 192 1582 161 0 42 chr1 36730755 36731065 -205933288 - AluJb SINE Alu -15 297 1 756 221 66 74 chr1 36731065 36731240 -205933113 - MIR SINE MIR -70 192 18 180 233 164 14 chr1 36731257 36731330 -205933023 + MIR SINE MIR 176 259 -3 1010 161 21 5 chr1 36732197 36732383 -205931970 + MER53 DNA DNA 1 189 0 262 349 75 9 chr1 36732638 36732744 -205931609 - L2 LINE L2 -5 3267 3155 723 225 163 52 chr1 36732920 36733132 -205931221 - L2 LINE L2 0 3313 3055 840 156 0 15 chr1 36733132 36733267 -205931086 - FLAM_C SINE Alu 0 133 1 723 225 163 52 chr1 36733267 36733361 -205930992 - L2 LINE L2 -258 3055 2973 252 0 0 0 chr1 36733385 36733413 -205930940 + (GGAAA)n Simple_repeat Simple_repeat 5 32 0 279 282 251 23 chr1 36733549 36733827 -205930526 - L2 LINE L2 -240 3073 2720 4075 70 0 2 chr1 36734100 36734625 -205929728 + L1PA5 LINE L1 5629 6152 -2 8694 152 53 28 chr1 36734715 36735447 -205928906 - L1 LINE L1 -1137 5009 4296 2029 129 7 0 chr1 36735447 36735757 -205928596 - AluSx SINE Alu 0 312 1 8694 152 53 28 chr1 36735757 36735771 -205928582 - L1 LINE L1 -1850 4296 4284 1840 143 11 0 chr1 36735771 36736051 -205928302 - AluSx SINE Alu -29 283 1 8694 152 53 28 chr1 36736051 36737029 -205927324 - L1 LINE L1 -1862 4284 3242 2019 131 64 22 chr1 36737312 36737672 -205926681 + THE1C LTR MaLR 1 375 0 1287 181 68 19 chr1 36738069 36738335 -205926018 + AluJb SINE Alu 1 279 -33 204 40 0 0 chr1 36738338 36738363 -205925990 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 372 232 84 70 chr1 36738375 36738517 -205925836 + L1ME4a LINE L1 5967 6110 -11 2151 111 0 0 chr1 36738873 36739170 -205925183 + AluSx SINE Alu 1 297 -15 218 291 173 27 chr1 36739171 36739281 -205925072 - L2 LINE L2 -4 3268 3143 1939 267 75 35 chr1 36739299 36740475 -205923878 - L2 LINE L2 -4 3309 2090 2008 111 7 3 chr1 36740745 36741033 -205923320 + AluSg SINE Alu 1 289 -21 2301 99 3 0 chr1 36741046 36741358 -205922995 + AluSp SINE Alu 1 313 0 1434 123 14 9 chr1 36741363 36741583 -205922770 + AluSg/x SINE Alu 85 305 -7 541 238 19 81 chr1 36741953 36742113 -205922240 - MIR3 SINE MIR -52 156 7 1254 164 51 19 chr1 36742433 36742689 -205921664 + AluSq SINE Alu 1 264 -49 930 67 42 0 chr1 36792689 36792966 -205871387 + L1PA11 LINE L1 6042 6323 0 226 330 64 0 chr1 36793093 36793202 -205871151 - L2 LINE L2 -335 2978 2863 744 292 116 26 chr1 36793327 36793860 -205870493 + L2 LINE L2 2446 3059 -213 760 239 46 87 chr1 36793974 36794128 -205870225 + MLT1I LTR MaLR 63 222 -187 2099 82 10 10 chr1 36794128 36794452 -205869901 + AluSp SINE Alu 1 313 0 760 239 46 87 chr1 36794452 36794663 -205869690 + MLT1I LTR MaLR 222 391 -18 290 271 65 28 chr1 36794673 36794780 -205869573 + L2 LINE L2 3202 3312 -1 429 269 44 94 chr1 36795041 36795338 -205869015 - L2 LINE L2 -159 3113 2832 495 219 33 66 chr1 36795403 36795554 -205868799 - L2 LINE L2 -210 3062 2917 186 103 0 0 chr1 36795776 36795805 -205868548 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2765 172 93 38 chr1 36795944 36796187 -205868166 - L1MC3 LINE L1 -8 7777 7549 1998 107 21 0 chr1 36796187 36796476 -205867877 - AluSq SINE Alu -18 295 1 2765 172 93 38 chr1 36796476 36796896 -205867457 - L1MC3 LINE L1 -236 7549 7077 289 190 63 0 chr1 36797518 36797597 -205866756 - L1MA7 LINE L1 -1 6290 6207 192 343 221 15 chr1 36797619 36798080 -205866273 + L2 LINE L2 1939 2494 -820 665 160 0 0 chr1 36798162 36798268 -205866085 + FLAM_C SINE Alu 2 107 -36 255 61 0 0 chr1 36798452 36798485 -205865868 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2023 112 3 3 chr1 36798526 36798820 -205865533 - AluSq SINE Alu -15 298 5 1337 241 82 66 chr1 36799203 36799780 -205864573 - MER97a DNA MER1_type? -307 587 2 826 227 106 5 chr1 36799783 36799990 -205864363 - L1MC4a LINE L1 -454 7354 7127 * 1132 160 55 5 chr1 36799980 36800199 -205864154 - L1MC4 LINE L1 -871 7171 6942 213 39 0 0 chr1 36800327 36800353 -205864000 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 248 257 229 12 chr1 36800419 36800569 -205863784 + MIR SINE MIR 11 192 -70 311 291 150 56 chr1 36801019 36801406 -205862947 + L2 LINE L2 2787 3208 -105 314 158 18 35 chr1 36801901 36801958 -205862395 + MER117 DNA MER1_type 95 150 -47 303 236 9 0 chr1 36802176 36802248 -205862105 + MIR SINE MIR 85 145 -63 196 286 0 18 chr1 36802405 36802461 -205861892 - L2 LINE L2 -13 3259 3205 186 319 0 0 chr1 36802485 36802532 -205861821 + L2 LINE L2 3210 3256 -16 291 287 37 61 chr1 36803023 36803190 -205861163 + MIR SINE MIR 45 205 -57 228 293 0 0 chr1 36803523 36803581 -205860772 - MLT1K LTR MaLR -340 248 191 718 232 137 82 chr1 36804369 36804585 -205859768 - MLT1D LTR MaLR 0 505 302 180 111 0 0 chr1 36804585 36804612 -205859741 + (TC)n Simple_repeat Simple_repeat 2 28 0 1945 164 0 7 chr1 36804613 36804900 -205859453 - AluJo SINE Alu -27 285 1 718 232 137 82 chr1 36804900 36805119 -205859234 - MLT1D LTR MaLR -202 303 6 194 163 113 88 chr1 36805276 36805356 -205858997 + MIR SINE MIR 110 191 -71 456 323 53 5 chr1 36805711 36805900 -205858453 - MIR SINE MIR -2 260 63 473 188 42 0 chr1 36806065 36806161 -205858192 + L2 LINE L2 3214 3313 0 342 261 152 36 chr1 36806589 36806643 -205857710 - L1ME4a LINE L1 -1 6120 6074 2363 73 3 52 chr1 36806643 36806970 -205857383 + AluY SINE Alu 1 311 0 342 261 152 36 chr1 36806970 36807053 -205857300 - L1ME4a LINE L1 -47 6074 5967 1876 105 0 95 chr1 36807069 36807384 -205856969 + AluSx SINE Alu 1 285 -27 503 0 32 0 chr1 36807384 36807446 -205856907 + (CATAA)n Simple_repeat Simple_repeat 2 65 0 394 213 170 7 chr1 36807725 36807866 -205856487 + MLT1J2 LTR MaLR 265 428 -22 2244 126 0 0 chr1 36807895 36808197 -205856156 - AluSx SINE Alu -10 302 1 2348 104 0 0 chr1 36808341 36808638 -205855715 - AluSx SINE Alu -15 297 1 2624 188 8 16 chr1 36809134 36809640 -205854713 - MER82 DNA MER2_type -1 652 151 2381 95 3 3 chr1 36809640 36809946 -205854407 + AluSx SINE Alu 1 306 -6 1180 240 103 51 chr1 36809999 36810466 -205853887 - LTR16C LTR ERVL 0 491 1 213 276 17 0 chr1 36810563 36810621 -205853732 + GA-rich Low_complexity Low_complexity 3 61 0 838 312 30 24 chr1 36810723 36811053 -205853300 - ERVL LTR ERVL -711 5053 4722 2426 97 0 0 chr1 36811070 36811370 -205852983 + AluY SINE Alu 1 300 -11 1406 122 11 0 chr1 36811380 36811569 -205852784 + AluSp SINE Alu 1 191 -122 497 31 0 0 chr1 36811669 36811734 -205852619 + L1PA5 LINE L1 6087 6151 -3 2268 118 0 13 chr1 36812063 36812241 -205852112 - AluSg SINE Alu -1 309 135 2058 131 13 3 chr1 36812241 36812539 -205851814 - AluSg SINE Alu -9 301 1 2268 118 0 13 chr1 36812539 36812673 -205851680 - AluSg SINE Alu -175 135 1 372 257 20 0 chr1 36812673 36812774 -205851579 - MIR SINE MIR -57 205 103 971 242 188 34 chr1 36812807 36813319 -205851034 - L2 LINE L2 0 3313 2741 923 154 150 59 chr1 36814490 36814656 -205849697 + L1MB7 LINE L1 5925 6117 -67 2209 95 6 50 chr1 36814656 36814973 -205849380 - AluSx SINE Alu -7 305 3 923 154 150 59 chr1 36814973 36815026 -205849327 + L1MB7 LINE L1 6117 6164 -20 613 291 62 26 chr1 36816409 36816636 -205847717 - MIR SINE MIR -6 256 22 206 276 40 0 chr1 36816862 36816938 -205847415 + L2 LINE L2 2635 2713 -601 195 250 104 0 chr1 36817270 36817318 -205847035 + MIR SINE MIR 65 117 -145 226 353 0 49 chr1 36817417 36817519 -205846834 - MIR SINE MIR -57 205 109 347 287 143 26 chr1 36817532 36817762 -205846591 + L2 LINE L2 2601 2857 -457 325 293 9 9 chr1 36818519 36818625 -205845728 + MIR SINE MIR 30 135 -127 1054 163 45 24 chr1 36818625 36818871 -205845482 - L1 LINE L1 -2654 3492 3242 1906 131 64 22 chr1 36819154 36819514 -205844839 + THE1C LTR MaLR 1 375 0 1425 181 68 19 chr1 36819911 36820177 -205844176 + AluJb SINE Alu 1 279 -33 204 40 0 0 chr1 36820180 36820205 -205844148 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 360 237 79 79 chr1 36820217 36820369 -205843984 + L1ME4a LINE L1 5967 6118 -3 2322 108 0 0 chr1 36820717 36821014 -205843339 + AluSx SINE Alu 1 297 -15 190 291 173 27 chr1 36821015 36821125 -205843228 - L2 LINE L2 -4 3268 3143 2161 277 104 18 chr1 36821143 36822569 -205841784 - L2 LINE L2 -4 3309 1756 1006 261 38 10 chr1 36822611 36822902 -205841451 + L1ME LINE L1 5369 5667 -497 2000 93 4 0 chr1 36823003 36823250 -205841103 - AluSx SINE Alu -64 248 1 495 254 35 30 chr1 36823424 36823593 -205840760 + MIR SINE MIR 2 171 -91 3812 247 125 37 chr1 36823724 36825523 -205838830 + L2 LINE L2 1275 3270 -43 344 291 0 71 chr1 36825575 36825627 -205838726 + MIR SINE MIR 117 171 -91 2489 98 0 0 chr1 36825627 36825933 -205838420 - AluSg SINE Alu -4 306 1 344 291 0 71 chr1 36825933 36826021 -205838332 + MIR SINE MIR 171 247 -15 407 314 43 0 chr1 36826411 36826551 -205837802 + MIR SINE MIR 105 250 -12 369 270 60 76 chr1 36826616 36826708 -205837645 + MIR SINE MIR 32 121 -141 2573 80 0 13 chr1 36826708 36827022 -205837331 - AluSq SINE Alu -2 311 2 369 270 60 76 chr1 36827022 36827114 -205837239 + MIR SINE MIR 121 213 -49 27 29 0 0 chr1 36827142 36827176 -205837177 + AT_rich Low_complexity Low_complexity 1 34 0 188 139 0 93 chr1 36827421 36827464 -205836889 + L2 LINE L2 3233 3271 -1 246 365 91 15 chr1 36828008 36828205 -205836148 - L2 LINE L2 -683 2631 2420 2295 115 0 6 chr1 36828269 36828583 -205835770 - AluSq SINE Alu -1 312 1 412 309 71 0 chr1 36828844 36829012 -205835341 + MIR SINE MIR 13 192 -70 189 291 111 0 chr1 36829090 36829207 -205835146 - L2 LINE L2 -223 3049 2920 293 365 19 0 chr1 36829841 36829997 -205834356 + L2 LINE L2 2226 2384 -930 416 351 68 23 chr1 36829997 36830466 -205833887 + L2 LINE L2 2685 3270 -2 475 263 36 7 chr1 36830736 36830873 -205833480 + MIR SINE MIR 24 164 -98 2519 93 0 0 chr1 36830905 36831217 -205833136 - AluSq SINE Alu -1 312 1 195 277 21 0 chr1 36831244 36831291 -205833062 - L2 LINE L2 -20 3252 3205 193 295 16 16 chr1 36832096 36832157 -205832196 - MIR SINE MIR -105 103 43 351 253 74 11 chr1 36832346 36832441 -205831912 - MIR SINE MIR -62 146 46 231 36 0 0 chr1 36832461 36832489 -205831864 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr1 36832645 36832672 -205831681 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1674 169 0 41 chr1 36832672 36832967 -205831386 - AluJo SINE Alu -27 285 3 208 261 22 43 chr1 36833571 36833663 -205830690 + L2 LINE L2 2490 2579 -735 3257 117 33 23 chr1 36833766 36834288 -205830065 + MER1A DNA MER1_type 1 527 0 797 264 25 17 chr1 36834334 36834569 -205829784 - MIR SINE MIR -8 254 18 1111 158 26 18 chr1 36834619 36834847 -205829506 + MER96B DNA MER1_type? 133 362 -55 770 292 84 15 chr1 36834853 36835244 -205829109 + L2 LINE L2 2835 3252 -61 185 246 88 0 chr1 36835609 36835666 -205828687 - MIR3 SINE MIR -19 189 128 794 222 169 30 chr1 36835744 36836046 -205828307 - L2 LINE L2 -2 3311 2968 457 216 22 86 chr1 36836079 36836218 -205828135 + MLT1J LTR MaLR 262 391 -120 569 241 7 22 chr1 36836289 36836426 -205827927 + MER63A DNA MER1_type 72 206 -4 316 304 136 59 chr1 36837095 36837536 -205826817 + L2 LINE L2 2373 2847 -467 871 191 106 0 chr1 36837546 36837734 -205826619 - MER3 DNA MER1_type -1 208 1 192 250 0 0 chr1 36837775 36837819 -205826534 + L2 LINE L2 2998 3041 -231 1936 123 31 24 chr1 36837919 36838212 -205826141 + AluSx SINE Alu 1 295 -17 311 172 0 0 chr1 36838229 36838287 -205826066 + Alu SINE Alu 245 302 0 245 167 24 0 chr1 36838287 36838329 -205826024 + L2 LINE L2 3141 3183 -89 586 228 66 56 chr1 36838615 36838812 -205825541 + MIR SINE MIR 44 242 -20 328 307 22 0 chr1 36838911 36839048 -205825305 - MIR3 SINE MIR -15 193 54 635 257 59 21 chr1 36839192 36839379 -205824974 - MIR SINE MIR -56 206 13 188 310 17 0 chr1 36839402 36839460 -205824893 - L2 LINE L2 -4 3309 3251 300 235 80 123 chr1 36839613 36839653 -205824700 + MIR SINE MIR 108 148 -114 2252 125 0 0 chr1 36839653 36839958 -205824395 - AluSx SINE Alu -7 305 1 300 235 80 123 chr1 36839958 36840079 -205824274 + MIR SINE MIR 148 262 0 200 333 25 25 chr1 36840790 36840871 -205823482 + MIR SINE MIR 164 244 -18 315 213 0 0 chr1 36841263 36841338 -205823015 + (TG)n Simple_repeat Simple_repeat 1 75 0 186 311 0 49 chr1 36841483 36841544 -205822809 + MIR SINE MIR 40 97 -165 1701 151 12 72 chr1 36841548 36841880 -205822473 - AluJo SINE Alu 0 312 1 372 178 33 0 chr1 36841895 36841985 -205822368 - L1MB4 LINE L1 -2 6178 6086 2016 162 0 19 chr1 36842045 36842359 -205821994 - AluJb SINE Alu -4 308 1 392 215 51 0 chr1 36842367 36842446 -205821907 + MIR SINE MIR 110 192 -70 231 246 0 0 chr1 36842761 36842818 -205821535 - L1MC4 LINE L1 -1334 6708 6652 236 234 0 43 chr1 36842824 36842918 -205821435 - L1MC4 LINE L1 -1339 6703 6614 207 0 0 0 chr1 36842918 36842941 -205821412 + (TATATG)n Simple_repeat Simple_repeat 5 27 0 1962 106 31 38 chr1 36842941 36843233 -205821120 - AluSx SINE Alu -22 290 1 270 200 0 33 chr1 36843401 36843461 -205820892 + MIR3 SINE MIR 122 179 -29 569 277 71 34 chr1 36843479 36843717 -205820636 + MIR SINE MIR 1 247 -15 801 252 52 5 chr1 36844613 36844823 -205819530 + MIR SINE MIR 37 256 -6 543 221 0 0 chr1 36844916 36845043 -205819310 + (CA)n Simple_repeat Simple_repeat 2 128 0 370 287 66 30 chr1 36845181 36845348 -205819005 - MIR SINE MIR -10 252 80 284 291 0 0 chr1 36845397 36845476 -205818877 - L2 LINE L2 -209 3063 2985 1017 185 25 30 chr1 36845482 36845682 -205818671 + MER20 DNA MER1_type 7 205 -14 520 302 167 0 chr1 36845698 36845913 -205818440 - MIR SINE MIR -4 258 8 220 248 137 46 chr1 36845968 36846121 -205818232 + MIR3 SINE MIR 35 201 -7 481 256 43 37 chr1 36846872 36847036 -205817317 + MIR3 SINE MIR 21 185 -23 397 221 13 0 chr1 36847346 36847423 -205816930 - L3 LINE CR1 -97 1480 1403 235 364 18 0 chr1 36847503 36847613 -205816740 - L2 LINE L2 -1 3271 3160 477 276 0 32 chr1 36847686 36847842 -205816511 + MER103 DNA DNA 3 153 -13 216 0 0 0 chr1 36847878 36847902 -205816451 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 247 240 67 0 chr1 36847908 36847983 -205816370 - L2 LINE L2 -214 3058 2979 294 206 22 98 chr1 36848707 36848891 -205815462 + (CCCCG)n Simple_repeat Simple_repeat 5 174 0 279 0 0 0 chr1 36850485 36850516 -205813837 + (TG)n Simple_repeat Simple_repeat 2 32 0 220 313 0 23 chr1 36850582 36850713 -205813640 - L2 LINE L2 -290 2982 2855 404 305 35 40 chr1 36851273 36851447 -205812906 + MLT1L LTR MaLR 1 173 -442 328 243 14 0 chr1 36851440 36851514 -205812839 + MLT1L LTR MaLR 124 198 -417 * 226 237 197 26 chr1 36851631 36851707 -205812646 + MLT1K LTR MaLR 328 416 -172 255 260 60 30 chr1 36851743 36851843 -205812510 + MLT1L LTR MaLR 513 615 0 186 273 182 16 chr1 36851961 36852082 -205812271 - L2 LINE L2 -1 3312 3172 290 297 30 10 chr1 36852107 36852208 -205812145 - MIR SINE MIR -48 214 112 467 317 164 26 chr1 36852217 36852639 -205811714 + MLT1J2 LTR MaLR 1 495 -16 2244 126 0 0 chr1 36852661 36852963 -205811390 - AluSx SINE Alu -10 302 1 2348 104 0 0 chr1 36853107 36853404 -205810949 - AluSx SINE Alu -15 297 1 2788 198 12 34 chr1 36853901 36854407 -205809946 - MER82 DNA MER2_type -1 652 158 2058 117 7 3 chr1 36854407 36854689 -205809664 + AluSq SINE Alu 1 303 0 181 0 0 0 chr1 36854689 36854709 -205809644 + (TAAA)n Simple_repeat Simple_repeat 1 156 0 2788 198 12 34 chr1 36854709 36854788 -205809565 - MER82 DNA MER2_type -495 158 79 466 243 50 50 chr1 36854932 36855113 -205809240 - MIR SINE MIR -17 245 65 205 337 46 29 chr1 36855263 36855438 -205808915 + L2 LINE L2 1314 1491 -1823 329 312 127 41 chr1 36855801 36856093 -205808260 + L1M2 LINE L1 793 1109 -5740 1404 238 103 51 chr1 36856422 36856889 -205807464 - LTR16C LTR ERVL 0 491 1 213 276 17 0 chr1 36856986 36857044 -205807309 + GA-rich Low_complexity Low_complexity 3 61 0 842 307 30 23 chr1 36857146 36857449 -205806904 - ERVL LTR ERVL -711 5053 4749 2173 93 11 0 chr1 36857493 36857796 -205806557 + AluSg SINE Alu 1 306 0 188 151 0 151 chr1 36857903 36857956 -205806397 - L2 LINE L2 -2099 1215 1171 2274 308 44 18 chr1 36858098 36859045 -205805308 - ERVL LTR ERVL -1336 4318 3347 319 228 13 13 chr1 36859077 36859156 -205805197 + LTR50 LTR ERVL 3 81 -714 432 55 0 0 chr1 36859174 36859229 -205805124 + (TA)n Simple_repeat Simple_repeat 1 55 0 226 200 71 0 chr1 36859229 36859299 -205805054 - L1MCa LINE L1 -4362 2064 1990 1171 347 14 6 chr1 36859317 36860074 -205804279 - ERVL LTR ERVL -3420 1576 1251 1157 224 174 3 chr1 36860208 36860806 -205803547 + LTR50 LTR ERVL 3 787 -8 2121 122 14 0 chr1 36861035 36861330 -205803023 - AluSx SINE Alu 0 312 14 377 298 28 79 chr1 36861344 36861559 -205802794 - ERVL LTR ERVL -4163 833 630 421 291 85 40 chr1 36862045 36862244 -205802109 - LTR16C LTR ERVL -96 395 188 301 244 146 0 chr1 36862369 36862451 -205801902 + L1MD2 LINE L1 6256 6349 -10 234 0 0 0 chr1 36862518 36862544 -205801809 + (CA)n Simple_repeat Simple_repeat 1 26 0 207 100 0 0 chr1 36862543 36862573 -205801780 + (TA)n Simple_repeat Simple_repeat 2 31 0 * 342 366 69 28 chr1 36862847 36863063 -205801290 + L1MEd LINE L1 535 759 -5360 442 321 101 52 chr1 36863088 36863493 -205800860 - LTR16A LTR ERVL -8 442 18 442 222 135 52 chr1 36863533 36863763 -205800590 + L1MEd LINE L1 817 1065 -5054 493 234 89 132 chr1 36863768 36863792 -205800561 + MIR SINE MIR 1 24 -238 1976 137 17 7 chr1 36863792 36864092 -205800261 + AluJb SINE Alu 1 303 -9 493 234 89 132 chr1 36864092 36864324 -205800029 + MIR SINE MIR 24 246 -16 471 304 82 16 chr1 36864326 36864842 -205799511 + L1MEd LINE L1 1052 1655 -857 292 227 13 40 chr1 36864862 36864937 -205799416 + L1ME1 LINE L1 44 116 -6280 7061 117 22 13 chr1 36864955 36865636 -205798717 - Tigger3b DNA MER2_type -1811 1217 520 2225 109 0 0 chr1 36865636 36865968 -205798385 + AluSx SINE Alu 1 332 0 7061 117 22 13 chr1 36865968 36866374 -205797979 - Tigger3b DNA MER2_type -2508 520 119 2362 184 35 78 chr1 36866374 36866951 -205797402 + MLT2B3 LTR ERVL 3 554 0 760 140 18 0 chr1 36866951 36867065 -205797288 - Tigger3b DNA MER2_type -1114 117 2 2728 226 90 9 chr1 36867065 36867763 -205796590 + L1ME1 LINE L1 114 868 -5528 647 158 62 89 chr1 36867764 36867910 -205796443 + FLAM_C SINE Alu 2 143 0 1917 168 0 13 chr1 36867922 36868225 -205796128 + AluJb SINE Alu 1 299 -13 5471 220 77 64 chr1 36868233 36869274 -205795079 + L1ME1 LINE L1 867 1893 -4322 2076 108 18 0 chr1 36869274 36869595 -205794758 + AluSq SINE Alu 1 326 0 5471 220 77 64 chr1 36869595 36869756 -205794597 + L1ME1 LINE L1 1893 2050 -4165 782 168 0 51 chr1 36869756 36869893 -205794460 + FRAM SINE Alu 39 168 -8 5471 220 77 64 chr1 36869893 36870301 -205794052 + L1ME1 LINE L1 2050 2451 -3764 2275 135 68 14 chr1 36870301 36870671 -205793682 + MLT1B LTR MaLR 1 390 0 5471 220 77 64 chr1 36870671 36871853 -205792500 + L1ME1 LINE L1 2451 3851 -2364 2361 64 10 7 chr1 36871853 36872148 -205792205 + AluY SINE Alu 1 296 -15 5471 220 77 64 chr1 36872148 36872376 -205791977 + L1ME1 LINE L1 3851 4075 -2140 5359 168 23 25 chr1 36872396 36874182 -205790171 - L1MA9 LINE L1 -38 6274 4480 3642 194 103 106 chr1 36874169 36874740 -205789613 + L1ME1 LINE L1 4053 4624 -1717 * 1843 172 0 3 chr1 36874740 36875037 -205789316 + AluJo SINE Alu 1 296 -16 3642 194 103 106 chr1 36875037 36875170 -205789183 + L1ME1 LINE L1 4624 4756 -1585 2140 134 0 7 chr1 36875170 36875477 -205788876 + AluSx SINE Alu 1 305 -7 3642 194 103 106 chr1 36875477 36875991 -205788362 + L1ME1 LINE L1 4756 5271 -1070 1075 220 0 0 chr1 36875991 36876164 -205788189 + FAM SINE Alu 1 173 -2 3642 194 103 106 chr1 36876164 36876491 -205787862 + L1ME1 LINE L1 5271 5598 -743 29422 64 9 5 chr1 36876502 36880475 -205783878 - L1PA6 LINE L1 -13 6141 2149 2322 101 0 0 chr1 36880475 36880771 -205783582 - AluY SINE Alu -15 296 1 29422 64 9 5 chr1 36880771 36881433 -205782920 - L1PA6 LINE L1 -4005 2149 1491 1587 203 36 43 chr1 36881436 36881474 -205782879 + L1ME1 LINE L1 5589 5626 -609 2463 147 52 7 chr1 36881474 36881882 -205782471 + MSTA LTR MaLR 1 426 -2 1587 203 36 43 chr1 36881882 36881973 -205782380 + L1ME1 LINE L1 5626 5716 -519 2660 135 45 43 chr1 36881973 36882396 -205781957 - MSTB LTR MaLR 0 426 3 1587 203 36 43 chr1 36882396 36882684 -205781669 + L1ME1 LINE L1 5716 6004 -231 764 184 116 0 chr1 36882684 36882831 -205781522 - AluSg/x SINE Alu -12 298 135 456 254 0 37 chr1 36882836 36882970 -205781383 + L1MA10 LINE L1 6206 6334 0 2271 86 0 0 chr1 36883103 36883446 -205780907 + AluSc SINE Alu 1 343 0 213 219 0 41 chr1 36883562 36883635 -205780718 + A-rich Low_complexity Low_complexity 3 72 0 6454 147 7 14 chr1 36883731 36885175 -205779178 + L1MA3 LINE L1 4838 6272 -33 27 29 0 0 chr1 36885196 36885230 -205779123 + AT_rich Low_complexity Low_complexity 1 34 0 235 372 0 0 chr1 36885752 36885830 -205778523 - L2 LINE L2 -5 3267 3190 2421 89 0 13 chr1 36885857 36886171 -205778182 + AluSg SINE Alu 1 310 0 181 289 66 90 chr1 36886180 36886391 -205777962 - L2 LINE L2 -211 3061 2856 355 241 45 18 chr1 36886794 36886906 -205777447 + MIR3 SINE MIR 6 120 -88 340 274 20 20 chr1 36887169 36887315 -205777038 - HAL1b LINE L1 -2 1346 1201 186 71 0 0 chr1 36887317 36887345 -205777008 + (CA)n Simple_repeat Simple_repeat 1 28 0 807 276 132 29 chr1 36887600 36887696 -205776657 - L1ME LINE L1 -404 5717 5632 1641 167 50 14 chr1 36887696 36887977 -205776376 + AluJb SINE Alu 1 291 -21 807 276 132 29 chr1 36887977 36888296 -205776057 - L1ME LINE L1 -489 5632 5259 480 35 0 0 chr1 36888465 36888523 -205775830 + (CA)n Simple_repeat Simple_repeat 2 59 0 408 287 67 24 chr1 36888647 36888811 -205775542 + MIR SINE MIR 20 190 -72 409 280 91 38 chr1 36889836 36890022 -205774331 - MIR SINE MIR -3 259 64 274 206 64 53 chr1 36890140 36890269 -205774084 + MIR SINE MIR 19 137 -71 480 294 49 6 chr1 36891048 36891211 -205773142 - MIR SINE MIR -33 229 60 207 254 18 0 chr1 36891476 36891531 -205772822 + GA-rich Low_complexity Low_complexity 3 58 0 277 113 245 0 chr1 36891632 36891685 -205772668 + MLT1K LTR MaLR 507 572 -16 1041 283 148 30 chr1 36891725 36892332 -205772021 + L2 LINE L2 2348 3064 -249 2273 109 70 56 chr1 36892332 36892502 -205771851 + THE1B LTR MaLR 1 167 -197 2378 104 0 0 chr1 36892502 36892810 -205771543 + AluSc SINE Alu 1 308 -1 2273 109 70 56 chr1 36892810 36892998 -205771355 + THE1B LTR MaLR 167 364 0 1041 283 148 30 chr1 36892998 36893084 -205771269 + L2 LINE L2 3064 3138 -175 2303 117 0 0 chr1 36893142 36893449 -205770904 + AluSq SINE Alu 1 307 -6 576 260 141 38 chr1 36893539 36893955 -205770398 + L1ME LINE L1 609 1073 -5046 817 239 118 44 chr1 36894128 36894564 -205769789 + L1ME LINE L1 1018 1494 -4635 839 312 27 37 chr1 36894564 36894939 -205769414 + L2 LINE L2 2834 3204 -109 27 29 0 0 chr1 36894953 36894987 -205769366 + AT_rich Low_complexity Low_complexity 1 34 0 502 244 32 0 chr1 36895173 36895296 -205769057 - MLT1L LTR MaLR 0 615 489 667 267 89 25 chr1 36895394 36895675 -205768678 - MLT1L LTR MaLR -299 316 18 209 277 188 9 chr1 36895734 36895846 -205768507 - MIR SINE MIR -68 194 63 2901 138 9 64 chr1 36895907 36896114 -205768239 + L1MB7 LINE L1 5670 5887 -297 2240 115 0 0 chr1 36896114 36896418 -205767935 + AluSx SINE Alu 1 304 -8 2901 138 9 64 chr1 36896418 36896745 -205767608 + L1MB7 LINE L1 5887 6175 -9 1933 209 136 6 chr1 36896750 36897252 -205767101 + MLT1G LTR MaLR 14 580 -10 310 296 21 37 chr1 36897607 36897796 -205766557 + L2 LINE L2 2251 2436 -878 2251 271 116 20 chr1 36897796 36898877 -205765476 + L2 LINE L2 2128 3313 0 2202 110 3 3 chr1 36898937 36899236 -205765117 - AluSg SINE Alu -11 299 1 22 0 0 0 chr1 36899399 36899421 -205764932 + AT_rich Low_complexity Low_complexity 1 22 0 346 244 79 24 chr1 36899425 36899552 -205764801 - L1ME4a LINE L1 -13 6108 5975 491 241 9 0 chr1 36899671 36899779 -205764574 + MIR SINE MIR 81 189 -73 289 303 22 0 chr1 36899829 36899918 -205764435 - MIR SINE MIR -15 247 157 623 276 81 24 chr1 36900581 36900827 -205763526 - MIR SINE MIR 0 262 3 305 326 34 39 chr1 36900884 36901062 -205763291 - MIR SINE MIR -65 197 21 334 252 168 17 chr1 36901164 36901283 -205763070 + L2 LINE L2 3175 3311 -2 797 278 72 32 chr1 36901503 36901802 -205762551 + MLT1L LTR MaLR 2 288 -327 2062 93 31 17 chr1 36901802 36902092 -205762261 - AluSx SINE Alu -18 294 1 797 278 72 32 chr1 36902092 36902349 -205762004 + MLT1L LTR MaLR 288 615 0 323 286 40 39 chr1 36902462 36902658 -205761695 - MIR SINE MIR -61 201 4 218 386 38 19 chr1 36902753 36902911 -205761442 + L2 LINE L2 2946 3106 -166 2335 101 0 0 chr1 36902938 36903235 -205761118 - AluSx SINE Alu -15 297 1 716 295 43 20 chr1 36903315 36903569 -205760784 + MIR SINE MIR 3 262 0 191 200 0 0 chr1 36903605 36903640 -205760713 + L2 LINE L2 3238 3272 0 394 240 188 6 chr1 36903716 36903880 -205760473 + MIR SINE MIR 38 244 -18 374 277 38 43 chr1 36904169 36904353 -205760000 + MIR3 SINE MIR 16 198 -10 236 348 25 9 chr1 36904884 36905040 -205759313 - MIR SINE MIR -62 146 26 1885 138 13 10 chr1 36905042 36905393 -205758960 - MER31A LTR ERV1 0 485 1 303 259 12 0 chr1 36905422 36905503 -205758850 - MLT1K LTR MaLR -2 586 505 401 297 23 40 chr1 36905535 36905710 -205758643 + MIR SINE MIR 29 200 -62 350 210 145 91 chr1 36905711 36905792 -205758561 + MER112 DNA MER1_type 21 96 -164 1492 145 86 48 chr1 36905792 36906082 -205758271 + AluJo SINE Alu 1 301 -11 222 37 0 0 chr1 36906082 36906109 -205758244 + (TA)n Simple_repeat Simple_repeat 2 28 0 350 210 145 91 chr1 36906109 36906167 -205758186 + MER112 DNA MER1_type 96 149 -111 189 74 0 0 chr1 36906167 36906194 -205758159 + (CTAGT)n Simple_repeat Simple_repeat 2 28 0 350 210 145 91 chr1 36906194 36906238 -205758115 + MER112 DNA MER1_type 149 216 -44 581 156 12 192 chr1 36906238 36906330 -205758023 + L1MA7 LINE L1 6155 6214 -86 2078 115 39 0 chr1 36906330 36906609 -205757744 + AluSx SINE Alu 1 290 -22 581 156 12 192 chr1 36906609 36906683 -205757670 + L1MA7 LINE L1 6214 6300 0 213 337 22 0 chr1 36906751 36906843 -205757510 + MIR SINE MIR 169 262 0 286 300 33 0 chr1 36907089 36907179 -205757174 - MIR SINE MIR 0 262 170 672 187 45 0 chr1 36907193 36907327 -205757026 + MLT1J2 LTR MaLR 3 142 -308 377 153 8 169 chr1 36907448 36907566 -205756787 + MER58B DNA MER1_type 231 329 -12 2066 99 3 11 chr1 36907568 36907941 -205756412 + AluSg SINE Alu 1 371 0 386 215 8 115 chr1 36907985 36908115 -205756238 - MLT1K LTR MaLR -350 238 123 1881 141 40 85 chr1 36908136 36908534 -205755819 + MLT1B LTR MaLR 1 380 -10 1978 133 23 17 chr1 36908972 36909317 -205755036 - THE1C LTR MaLR 0 375 29 252 163 0 23 chr1 36909429 36909472 -205754881 - AluJ/FLAM SINE Alu -245 57 16 264 210 230 0 chr1 36909491 36909591 -205754762 + Charlie1 DNA MER1_type 2638 2760 -1 2343 93 0 7 chr1 36909617 36909919 -205754434 - AluSx SINE Alu -12 300 1 186 377 41 41 chr1 36910087 36910233 -205754120 + L2 LINE L2 3163 3308 -5 * 795 244 12 0 chr1 36910228 36910392 -205753961 + MIR3 SINE MIR 28 193 -15 189 0 0 0 chr1 36911863 36911884 -205752469 + (A)n Simple_repeat Simple_repeat 1 21 0 2248 91 3 0 chr1 36911889 36912175 -205752178 + AluSq SINE Alu 7 293 -20 2340 100 0 3 chr1 36912176 36912477 -205751876 + AluSx SINE Alu 1 300 -12 250 216 20 0 chr1 36912477 36912528 -205751825 - MER5A DNA MER1_type -61 128 77 235 200 148 35 chr1 36912754 36912869 -205751484 + L1ME LINE L1 5617 5744 -377 1550 195 0 4 chr1 36912951 36913213 -205751140 + AluJb SINE Alu 12 272 -40 1342 204 7 29 chr1 36913225 36913336 -205751017 + AluJo SINE Alu 27 139 -173 2242 78 11 3 chr1 36913336 36913646 -205750707 + AluSp SINE Alu 2 313 0 1342 204 7 29 chr1 36913646 36913808 -205750545 + AluJo SINE Alu 139 295 -17 1620 156 35 0 chr1 36913974 36914231 -205750122 - AluJb SINE Alu -46 266 1 2269 72 0 17 chr1 36914254 36914544 -205749809 + AluY SINE Alu 3 287 -24 2473 56 0 26 chr1 36915461 36915766 -205748587 + AluY SINE Alu 1 297 -14 1167 188 4 4 chr1 36916095 36916324 -205748029 - AluJb SINE Alu 0 312 84 195 42 0 0 chr1 36916367 36916391 -205747962 + (TA)n Simple_repeat Simple_repeat 1 24 0 468 284 18 71 chr1 36916436 36916605 -205747748 - MIR3 SINE MIR -33 175 16 728 288 213 17 chr1 36917107 36917510 -205746843 - L1MC4a LINE L1 -1942 5866 5385 489 221 0 11 chr1 36918529 36918624 -205745729 - L1MC1 LINE L1 -60 6273 6180 392 227 216 11 chr1 36918626 36918802 -205745551 + MIR SINE MIR 24 235 -27 315 278 49 0 chr1 36918917 36919029 -205745324 + MIR SINE MIR 56 171 -63 2179 118 10 0 chr1 36919029 36919325 -205745028 - AluSx SINE Alu -13 299 1 225 0 0 0 chr1 36919328 36919353 -205745000 + (T)n Simple_repeat Simple_repeat 1 25 0 345 275 133 13 chr1 36919731 36919877 -205744476 + MIR SINE MIR 33 189 -62 22 80 0 13 chr1 36920203 36920265 -205744088 + AT_rich Low_complexity Low_complexity 1 63 -11 1499 194 20 3 chr1 36920265 36920558 -205743795 + AluJo SINE Alu 1 298 -14 22 80 0 13 chr1 36920558 36920570 -205743783 + AT_rich Low_complexity Low_complexity 63 74 0 289 262 60 12 chr1 36920789 36920873 -205743480 + L2 LINE L2 1875 1962 -1352 1269 188 21 106 chr1 36921840 36922170 -205742183 + AluYb8 SINE Alu 1 302 -16 184 363 30 44 chr1 36922190 36922325 -205742028 - L2 LINE L2 -1 3271 3139 319 289 258 21 chr1 36923107 36923297 -205741056 + MIR SINE MIR 2 236 -26 768 361 30 12 chr1 36924139 36924432 -205739921 - L3 LINE CR1 -1 1576 1275 2168 105 26 0 chr1 36924432 36924736 -205739617 - AluSx SINE Alu 0 312 1 768 361 30 12 chr1 36924736 36924780 -205739573 - L3 LINE CR1 -302 1275 1233 260 159 57 68 chr1 36924780 36924868 -205739485 - L1ME4a LINE L1 -62 6059 5973 765 252 148 13 chr1 36924905 36925223 -205739130 - L1ME4a LINE L1 -225 5896 5536 24 32 0 0 chr1 36925291 36925322 -205739031 + AT_rich Low_complexity Low_complexity 1 31 0 642 226 90 94 chr1 36925322 36925899 -205738454 - L1MC5 LINE L1 -292 7750 7193 1705 157 11 8 chr1 36926133 36926400 -205737953 + AluJb SINE Alu 1 268 -44 682 88 53 26 chr1 36927541 36927655 -205736698 + MER47A DNA MER2_type 45 161 -205 2353 95 3 0 chr1 36927677 36927983 -205736370 + AluSq SINE Alu 1 307 -6 499 267 78 42 chr1 36928727 36928785 -205735568 + MIR SINE MIR 37 91 -171 1678 174 33 4 chr1 36928785 36929061 -205735292 - AluJb SINE Alu 0 312 29 499 267 78 42 chr1 36929061 36929219 -205735134 + MIR SINE MIR 91 261 -1 655 172 78 117 chr1 36929451 36929631 -205734722 + MIR SINE MIR 52 224 -38 260 227 60 32 chr1 36930204 36930305 -205734048 - L1ME4a LINE L1 -743 5408 5315 443 285 79 47 chr1 36930597 36930832 -205733521 - MIR SINE MIR -1 261 17 827 173 19 125 chr1 36931014 36931036 -205733317 + MER5A DNA MER1_type 4 27 -162 2222 101 0 44 chr1 36931036 36931352 -205733001 + AluSx SINE Alu 1 302 -10 827 173 19 125 chr1 36931352 36931537 -205732816 + MER5A DNA MER1_type 27 189 0 355 259 149 30 chr1 36931625 36931697 -205732656 + MIR SINE MIR 2 64 -198 1964 135 46 0 chr1 36931697 36931979 -205732374 + AluSx SINE Alu 1 295 -17 355 259 149 30 chr1 36931979 36932107 -205732246 + MIR SINE MIR 64 226 -36 378 355 154 31 chr1 36932166 36932524 -205731829 + L2 LINE L2 2871 3272 0 1850 131 53 0 chr1 36932859 36933141 -205731212 + AluSg SINE Alu 1 297 -13 1841 143 33 13 chr1 36933270 36933571 -205730782 + AluJo SINE Alu 1 307 -5 271 217 0 0 chr1 36933573 36933619 -205730734 + MIR SINE MIR 30 75 -133 1033 214 229 23 chr1 36933757 36933840 -205730513 + L2 LINE L2 2444 2509 -805 2390 140 9 6 chr1 36933840 36934183 -205730170 + MER2 DNA MER2_type 1 344 0 1033 214 229 23 chr1 36934183 36934449 -205729904 + L2 LINE L2 2509 2865 -449 441 263 117 29 chr1 36934515 36934755 -205729598 + MIR SINE MIR 2 262 0 325 292 25 40 chr1 36934756 36934892 -205729461 - MER5B DNA MER1_type 0 178 60 836 147 14 35 chr1 36935585 36935687 -205728666 - AluSc SINE Alu -74 235 135 2264 117 0 3 chr1 36935687 36935994 -205728359 - AluSx SINE Alu -6 306 1 836 147 14 35 chr1 36935994 36936034 -205728319 - AluSc SINE Alu -174 135 96 2338 106 0 3 chr1 36936054 36936365 -205727988 - AluSx SINE Alu -2 310 1 265 149 21 0 chr1 36936365 36936412 -205727941 - L1M4 LINE L1 -683 5491 5444 * 2770 185 113 101 chr1 36936407 36936587 -205727766 - L1M4 LINE L1 -743 5403 5227 2528 66 0 3 chr1 36936587 36936892 -205727461 + AluY SINE Alu 1 304 -7 2770 185 113 101 chr1 36936892 36937164 -205727189 - L1M4 LINE L1 -919 5227 4960 2367 91 3 0 chr1 36937164 36937462 -205726891 + AluSp SINE Alu 9 307 -6 2770 185 113 101 chr1 36937462 36937631 -205726722 - L1M4 LINE L1 -1186 4960 4795 1675 148 36 22 chr1 36937631 36937909 -205726444 + AluJb SINE Alu 21 302 -10 258 32 0 0 chr1 36937910 36937941 -205726412 + (TA)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr1 36937940 36937964 -205726389 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 2770 185 113 101 chr1 36937941 36938289 -205726064 - L1M4 LINE L1 -1351 4795 4509 1959 153 0 3 chr1 36938289 36938589 -205725764 - AluSx SINE Alu -13 299 1 2770 185 113 101 chr1 36938589 36938982 -205725371 - L1M4 LINE L1 -1637 4509 4122 1815 83 120 26 chr1 36938999 36939158 -205725195 - AluY SINE Alu 0 311 168 2071 124 17 0 chr1 36939158 36939449 -205724904 - AluSp SINE Alu -17 296 1 1815 83 120 26 chr1 36939449 36939584 -205724769 - AluY SINE Alu -143 168 1 2279 100 0 7 chr1 36939611 36939912 -205724441 - AluSx SINE Alu -13 299 1 829 155 8 0 chr1 36939915 36940044 -205724309 - AluSq/x SINE Alu -179 133 4 519 184 153 0 chr1 36940077 36940175 -205724178 + FLAM_C SINE Alu 3 115 -18 984 183 26 7 chr1 36940184 36940414 -205723939 - AluJb SINE Alu -23 289 5 276 182 0 0 chr1 36940447 36940535 -205723818 + (TA)n Simple_repeat Simple_repeat 2 89 0 1323 72 22 22 chr1 36940536 36940692 -205723661 - AluY SINE Alu -23 288 130 1702 67 8 38 chr1 36940692 36940964 -205723389 - AluY SINE Alu 0 311 66 1323 72 22 22 chr1 36940964 36940988 -205723365 - AluY SINE Alu -180 131 108 882 150 52 26 chr1 36940990 36941143 -205723210 + FRAM SINE Alu 1 157 -9 467 174 283 0 chr1 36941149 36941241 -205723112 - FLAM_C SINE Alu -15 118 1 556 192 48 8 chr1 36941244 36941369 -205722984 - L1MEc LINE L1 -3060 3155 3026 1998 147 10 3 chr1 36941369 36941675 -205722678 - AluJb SINE Alu -4 308 1 2182 119 3 7 chr1 36941683 36941985 -205722368 - AluSg SINE Alu -9 301 1 770 167 70 87 chr1 36941998 36942297 -205722056 - L1MEc LINE L1 -4031 2365 2072 815 224 7 0 chr1 36942302 36942449 -205721904 - FRAM SINE Alu -12 164 17 2431 74 7 0 chr1 36942477 36942776 -205721577 - AluSp SINE Alu -12 301 1 751 228 70 21 chr1 36942778 36943019 -205721334 - L1MEc LINE L1 -4529 1867 1615 334 264 174 7 chr1 36943051 36943195 -205721158 - L1MEc LINE L1 -6192 204 37 23 68 0 0 chr1 36943447 36943491 -205720862 + AT_rich Low_complexity Low_complexity 1 44 0 2262 94 10 0 chr1 36943728 36944027 -205720326 + AluSq SINE Alu 6 307 -6 499 267 78 42 chr1 36944771 36944829 -205719524 + MIR SINE MIR 37 91 -171 1811 130 33 4 chr1 36944829 36945105 -205719248 - AluJb SINE Alu 0 312 29 499 267 78 42 chr1 36945105 36945263 -205719090 + MIR SINE MIR 91 261 -1 658 156 78 117 chr1 36945495 36945675 -205718678 + MIR SINE MIR 52 224 -38 260 227 60 32 chr1 36946248 36946349 -205718004 - L1M LINE L1 -743 5408 5315 443 285 79 47 chr1 36946641 36946876 -205717477 - MIR SINE MIR -1 261 17 878 164 19 125 chr1 36947058 36947080 -205717273 + MER5A DNA MER1_type 4 27 -162 2222 101 0 44 chr1 36947080 36947396 -205716957 + AluSx SINE Alu 1 302 -10 878 164 19 125 chr1 36947396 36947581 -205716772 + MER5A DNA MER1_type 27 189 0 365 254 154 35 chr1 36947668 36947740 -205716613 + MIR SINE MIR 2 64 -198 1981 131 46 0 chr1 36947740 36948022 -205716331 + AluSx SINE Alu 1 295 -17 365 254 154 35 chr1 36948022 36948150 -205716203 + MIR SINE MIR 64 226 -36 378 355 154 31 chr1 36948209 36948567 -205715786 + L2 LINE L2 2871 3272 0 2001 132 14 0 chr1 36948902 36949197 -205715156 + AluSx SINE Alu 1 299 -13 1841 143 33 13 chr1 36949324 36949625 -205714728 + AluJo SINE Alu 1 307 -5 271 217 0 0 chr1 36949627 36949673 -205714680 + MIR SINE MIR 30 75 -133 1002 217 229 23 chr1 36949811 36949894 -205714459 + L2 LINE L2 2444 2509 -805 2390 140 9 6 chr1 36949894 36950237 -205714116 + MER2 DNA MER2_type 1 344 0 1002 217 229 23 chr1 36950237 36950503 -205713850 + L2 LINE L2 2509 2865 -449 441 263 117 29 chr1 36950569 36950809 -205713544 + MIR SINE MIR 2 262 0 325 292 25 40 chr1 36950810 36950946 -205713407 - MER5B DNA MER1_type 0 178 60 2219 104 7 3 chr1 36953020 36953319 -205711034 - AluSp SINE Alu -13 300 1 2122 125 0 3 chr1 36955987 36956276 -205708077 - AluSx SINE Alu -22 290 3 180 231 231 58 chr1 36956754 36956858 -205707495 - MIR SINE MIR -67 141 20 205 273 0 18 chr1 36958317 36958372 -205705981 - L2 LINE L2 -2 3270 3217 266 263 45 11 chr1 36960000 36960100 -205704253 - MIR SINE MIR -67 141 51 206 317 28 42 chr1 36960600 36960742 -205703611 + L2 LINE L2 2595 2734 -580 2058 92 6 57 chr1 36960763 36960806 -205703547 + AluSg SINE Alu 1 45 -265 2429 66 3 0 chr1 36960806 36961107 -205703246 - AluSp SINE Alu -10 303 2 2058 92 6 57 chr1 36961107 36961380 -205702973 + AluSg SINE Alu 45 301 -9 710 209 95 38 chr1 36961418 36961629 -205702724 - MIR SINE MIR 0 262 40 418 286 209 9 chr1 36961697 36962046 -205702307 - HAL1 LINE L1 -117 2390 1972 260 341 11 51 chr1 36962220 36962396 -205701957 + L2 LINE L2 2955 3123 -149 222 245 0 0 chr1 36962402 36962451 -205701902 + A-rich Low_complexity Low_complexity 1 49 0 1380 128 9 18 chr1 36962595 36962821 -205701532 + AluJo SINE Alu 84 307 -5 477 310 55 0 chr1 36964208 36964353 -205700000 - MIR SINE MIR -107 155 3 208 219 37 37 chr1 36965626 36965708 -205698645 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 32 0 0 0 chr1 36966320 36966352 -205698001 + GC_rich Low_complexity Low_complexity 1 32 0 22 42 0 0 chr1 36966401 36966425 -205697928 + GC_rich Low_complexity Low_complexity 1 24 0 589 306 105 5 chr1 36967119 36967328 -205697025 - MIR SINE MIR -16 246 17 278 379 41 0 chr1 36967696 36967841 -205696512 - MIR3 SINE MIR -38 170 20 203 149 30 30 chr1 36968076 36968143 -205696210 + CT-rich Low_complexity Low_complexity 1 67 0 2092 91 14 0 chr1 36968723 36969008 -205695345 + AluSx SINE Alu 1 289 -23 240 282 0 39 chr1 36969013 36969091 -205695262 + L2 LINE L2 3197 3271 -1 355 268 0 0 chr1 36969098 36969180 -205695173 - L2 LINE L2 -2 3311 3230 2239 100 3 0 chr1 36969567 36969867 -205694486 - AluSq SINE Alu -10 303 3 340 308 37 0 chr1 36969898 36970005 -205694348 - MIR SINE MIR -99 163 53 368 216 0 0 chr1 36970283 36970357 -205693996 - MIR SINE MIR -112 150 77 290 296 96 96 chr1 36970437 36970781 -205693572 - L2 LINE L2 -51 3221 2878 936 289 117 33 chr1 36970894 36971612 -205692741 - L2 LINE L2 -1 3312 2530 199 267 0 19 chr1 36971799 36971904 -205692449 + G-rich Low_complexity Low_complexity 3 105 0 288 269 13 0 chr1 36972002 36972080 -205692273 - MIR SINE MIR -147 115 37 511 229 42 14 chr1 36972598 36972742 -205691611 + MIR SINE MIR 67 214 -48 322 304 234 25 chr1 36973485 36973686 -205690667 + MIR SINE MIR 20 262 0 822 126 160 46 chr1 36974754 36974929 -205689424 - AluJb SINE Alu -82 230 36 2272 71 17 0 chr1 36974976 36975270 -205689083 - AluY SINE Alu -12 299 1 2044 118 0 7 chr1 36975301 36975436 -205688917 + AluSg SINE Alu 1 135 -175 2281 85 16 0 chr1 36975436 36975741 -205688612 + AluSp SINE Alu 1 310 -3 2044 118 0 7 chr1 36975741 36975902 -205688451 + AluSg SINE Alu 135 295 -15 2254 73 0 27 chr1 36975906 36976207 -205688146 + AluY SINE Alu 1 293 -18 208 200 0 0 chr1 36976512 36976552 -205687801 + MIR SINE MIR 78 117 -91 450 311 30 24 chr1 36977650 36977817 -205686536 - MIR SINE MIR -2 260 93 535 298 15 0 chr1 36978474 36978487 -205685866 + MIR SINE MIR 30 41 -221 1729 153 13 23 chr1 36978487 36978650 -205685703 - AluJo SINE Alu -15 297 137 2332 77 0 3 chr1 36978650 36978948 -205685405 - AluY SINE Alu -14 297 1 1729 153 13 23 chr1 36978948 36979084 -205685269 - AluJo SINE Alu -175 137 1 535 298 15 0 chr1 36979084 36979248 -205685105 + MIR SINE MIR 41 211 -51 478 295 209 14 chr1 36980707 36980985 -205683368 + L2 LINE L2 2506 2837 -477 216 330 21 43 chr1 36981048 36981142 -205683211 + L2 LINE L2 3222 3313 0 1044 193 60 5 chr1 36983676 36983894 -205680459 - MIR SINE MIR -5 257 28 405 273 136 7 chr1 36984092 36984246 -205680107 + MIR SINE MIR 78 251 -11 180 294 0 110 chr1 36984910 36985019 -205679334 - MIR SINE MIR -34 228 132 1643 208 69 19 chr1 36985019 36985495 -205678858 - L1MC4 LINE L1 -3 8039 7540 325 257 40 20 chr1 36985496 36985597 -205678756 - MIR3 SINE MIR -49 159 57 293 244 67 3 chr1 36985632 36985767 -205678586 - MIR SINE MIR -5 257 71 332 333 29 22 chr1 36986066 36986204 -205678149 + MIR SINE MIR 124 262 0 247 308 120 8 chr1 36986982 36987099 -205677254 - L2 LINE L2 -42 3230 3101 311 304 54 9 chr1 36987236 36987348 -205677005 - MIR SINE MIR -114 148 32 402 269 135 14 chr1 36987549 36987690 -205676663 + MIR SINE MIR 104 261 -1 194 365 54 0 chr1 36988037 36988111 -205676242 - L2 LINE L2 -200 3072 2995 192 40 0 0 chr1 36989281 36989306 -205675047 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 202 347 61 10 chr1 36992376 36992474 -205671879 + MIR SINE MIR 43 145 -63 287 368 78 6 chr1 36992482 36992648 -205671705 + MIR SINE MIR 20 197 -65 459 269 145 32 chr1 36993454 36993640 -205670713 - MIR SINE MIR -16 246 40 279 292 25 4 chr1 36994036 36994136 -205670217 + MIR SINE MIR 81 187 -21 265 281 132 18 chr1 36994265 36994379 -205669974 - L2 LINE L2 0 3272 3146 281 293 61 0 chr1 36994469 36994568 -205669785 + MIR SINE MIR 79 183 -79 242 315 142 43 chr1 36994748 36995002 -205669351 - L3 LINE CR1 -221 1356 1078 186 43 0 0 chr1 36995002 36995025 -205669328 + (A)n Simple_repeat Simple_repeat 1 23 0 1679 166 3 30 chr1 36995027 36995329 -205669024 + AluJo SINE Alu 1 294 -18 396 266 28 18 chr1 36995411 36995520 -205668833 + MIR3 SINE MIR 67 176 -32 1085 132 136 53 chr1 36995864 36996092 -205668261 - AluJb SINE Alu -28 284 38 424 271 38 15 chr1 36996129 36996262 -205668091 - MIR SINE MIR -20 242 107 381 271 8 31 chr1 36996629 36996758 -205667595 - MIR SINE MIR -59 149 24 201 273 25 25 chr1 36996999 36997160 -205667193 + (CCCCG)n Simple_repeat Simple_repeat 2 162 0 23 0 0 0 chr1 36997206 36997229 -205667124 + GC_rich Low_complexity Low_complexity 1 23 0 229 258 112 11 chr1 36997324 36997413 -205666940 + MIR SINE MIR 23 120 -142 1758 87 0 80 chr1 36997583 36997858 -205666495 + AluSx SINE Alu 1 253 -59 314 253 56 126 chr1 36998664 36998727 -205665626 + L1ME LINE L1 5556 5622 -499 2359 52 3 39 chr1 36998727 36999034 -205665319 + AluY SINE Alu 1 296 -15 314 253 56 126 chr1 36999034 36999168 -205665185 + L1ME LINE L1 5622 5739 -382 2297 105 0 3 chr1 36999301 36999614 -205664739 + AluSx SINE Alu 1 312 0 472 260 24 23 chr1 36999901 37000070 -205664283 - MIR SINE MIR -57 151 13 369 297 10 0 chr1 37000335 37000436 -205663917 + MIR SINE MIR 45 146 -62 1999 113 4 0 chr1 37001031 37001305 -205663048 + AluSx SINE Alu 1 275 -37 282 194 0 0 chr1 37001343 37001405 -205662948 + CT-rich Low_complexity Low_complexity 3 64 0 2007 130 7 3 chr1 37001407 37001706 -205662647 - AluSx SINE Alu -1 311 12 1802 148 0 14 chr1 37001727 37002011 -205662342 - AluJb SINE Alu -19 293 14 189 0 0 0 chr1 37002019 37002040 -205662313 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2275 98 0 3 chr1 37002606 37002912 -205661441 - AluSx SINE Alu -7 305 1 21 0 0 0 chr1 37002913 37002934 -205661419 + AT_rich Low_complexity Low_complexity 1 21 0 910 325 214 9 chr1 37003015 37003889 -205660464 + L2 LINE L2 1617 2696 -618 2162 95 0 51 chr1 37003889 37004205 -205660148 - AluSg SINE Alu -10 300 1 910 325 214 9 chr1 37004205 37004263 -205660090 + L2 LINE L2 2696 2741 -573 1132 176 59 14 chr1 37004284 37004506 -205659847 + AluJo SINE Alu 1 232 -80 691 139 8 0 chr1 37004539 37004668 -205659685 + L1M4 LINE L1 4477 4606 -1540 636 234 24 1 chr1 37004678 37004851 -205659502 + L1PB4 LINE L1 5994 6165 -1 3172 184 11 30 chr1 37004856 37005119 -205659234 + L1M4 LINE L1 4614 4880 -1304 1491 194 9 44 chr1 37005119 37005434 -205658919 - AluJo SINE Alu -8 304 1 3172 184 11 30 chr1 37005434 37006187 -205658166 + L1M4 LINE L1 4880 5607 -577 1327 159 9 9 chr1 37006187 37006413 -205657940 + AluJb SINE Alu 87 312 0 668 144 17 0 chr1 37006419 37006537 -205657816 + L1M4 LINE L1 5601 5720 -454 1599 296 268 19 chr1 37006561 37007029 -205657324 + L2 LINE L2 1479 1829 -1484 2256 91 0 0 chr1 37007029 37007327 -205657026 - AluY SINE Alu -13 298 1 1599 296 268 19 chr1 37007327 37007354 -205656999 + L2 LINE L2 1829 1848 -1465 414 0 0 0 chr1 37007354 37007400 -205656953 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1599 296 268 19 chr1 37007400 37008124 -205656229 + L2 LINE L2 1848 3003 -310 1087 144 80 0 chr1 37008135 37008322 -205656031 + MER3 DNA MER1_type 1 202 -7 467 318 33 43 chr1 37008361 37008572 -205655781 + L2 LINE L2 3104 3312 -1 445 245 51 0 chr1 37008625 37008723 -205655630 + Charlie1 DNA MER1_type 1 103 -2658 2414 56 0 3 chr1 37008723 37009028 -205655325 - AluY SINE Alu -7 304 1 644 133 10 0 chr1 37009028 37009126 -205655227 - AluSg/x SINE Alu -18 292 194 2157 105 3 0 chr1 37009126 37009420 -205654933 - AluSg SINE Alu -15 295 1 9903 103 12 29 chr1 37009422 37009500 -205654853 - Tigger1 DNA MER2_type -727 1691 1613 2427 74 3 0 chr1 37009500 37009812 -205654541 - AluSp SINE Alu 0 313 1 9903 103 12 29 chr1 37009812 37010952 -205653401 - Tigger1 DNA MER2_type -805 1613 499 2400 69 0 0 chr1 37010952 37011258 -205653095 - AluY SINE Alu -5 306 1 9903 103 12 29 chr1 37011258 37011509 -205652844 - Tigger1 DNA MER2_type -1919 499 245 1896 172 71 0 chr1 37011509 37011834 -205652519 + MER7A DNA MER2_type 1 346 0 1445 158 8 8 chr1 37011838 37012079 -205652274 - Tigger1 DNA MER2_type -2176 242 2 1645 151 49 65 chr1 37012079 37012375 -205651978 + Charlie1 DNA MER1_type 2339 2638 -123 1983 146 0 0 chr1 37012375 37012669 -205651684 - AluJb SINE Alu -18 294 1 1645 151 49 65 chr1 37012669 37012743 -205651610 + Charlie1 DNA MER1_type 2638 2704 -57 2158 96 0 3 chr1 37012743 37013036 -205651317 - AluSq SINE Alu -21 292 1 1645 151 49 65 chr1 37013036 37013094 -205651259 + Charlie1 DNA MER1_type 2704 2761 0 1689 157 20 17 chr1 37013472 37013771 -205650582 + AluJb SINE Alu 1 300 -12 2250 104 0 0 chr1 37014174 37014481 -205649872 - AluSg SINE Alu -3 307 1 857 219 61 61 chr1 37014565 37014738 -205649615 + MIR SINE MIR 8 183 -79 925 92 0 63 chr1 37014738 37014880 -205649473 + FLAM_C SINE Alu 1 133 0 857 219 61 61 chr1 37014880 37014953 -205649400 + MIR SINE MIR 182 254 -8 2127 82 3 14 chr1 37014954 37015246 -205649107 - AluSc SINE Alu -20 289 1 804 207 110 90 chr1 37015536 37015826 -205648527 - MLT1K LTR MaLR 0 588 293 1828 115 45 10 chr1 37016046 37016334 -205648019 - AluSx SINE Alu -9 303 6 364 265 10 0 chr1 37016844 37016942 -205647411 + MIR3 SINE MIR 109 207 -1 259 186 86 29 chr1 37017025 37017095 -205647258 - LTR33A LTR ERVL -2 521 448 2219 98 3 3 chr1 37017115 37017421 -205646932 + AluSx SINE Alu 1 306 -6 1961 103 53 0 chr1 37017452 37017733 -205646620 + AluSq SINE Alu 1 296 -17 3518 137 58 118 chr1 37017899 37018032 -205646321 + L1MB7 LINE L1 5195 5334 -850 2343 90 0 0 chr1 37018032 37018343 -205646010 + AluY SINE Alu 1 311 0 3518 137 58 118 chr1 37018343 37018523 -205645830 + L1MB7 LINE L1 5334 5523 -661 283 143 0 0 chr1 37018523 37018565 -205645788 - MLT1K LTR MaLR -254 334 293 3518 137 58 118 chr1 37018565 37018877 -205645476 + L1MB7 LINE L1 5523 5798 -386 2031 130 0 0 chr1 37018877 37019185 -205645168 + AluSx SINE Alu 1 308 -4 3518 137 58 118 chr1 37019185 37019445 -205644908 + L1MB7 LINE L1 5798 6072 -112 9913 187 56 62 chr1 37019445 37021927 -205642426 - HERVS71 LTR ERV1 -6507 2471 4 4316 67 10 38 chr1 37021929 37022509 -205641844 - LTR6A LTR ERV1 0 564 1 1975 141 74 37 chr1 37022509 37022569 -205641784 - L1MA7 LINE L1 -143 6148 6092 2149 144 105 5 chr1 37022569 37022958 -205641395 - MSTA LTR MaLR 0 428 1 1975 141 74 37 chr1 37022958 37023000 -205641353 - L1MA7 LINE L1 -199 6092 6053 288 0 0 0 chr1 37023000 37023032 -205641321 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1975 141 74 37 chr1 37023032 37023331 -205641022 - L1MA7 LINE L1 -238 6053 5731 353 302 22 28 chr1 37023688 37023867 -205640486 - ERVL LTR ERVL -350 5414 5237 * 922 309 75 28 chr1 37023865 37024584 -205639769 - ERVL LTR ERVL -2866 2898 2018 2784 134 40 15 chr1 37024584 37025040 -205639313 - MLT1C LTR MaLR 0 467 1 922 309 75 28 chr1 37025040 37025413 -205638940 - ERVL LTR ERVL -3746 2018 1664 2027 123 0 0 chr1 37025719 37026004 -205638349 - AluSx SINE Alu -27 285 1 1894 152 0 7 chr1 37026006 37026302 -205638051 - AluJo SINE Alu -18 294 1 2093 118 0 0 chr1 37026400 37026696 -205637657 + AluSx SINE Alu 1 296 -16 332 290 70 30 chr1 37027617 37027817 -205636536 - LTR67 LTR ERVL 0 557 350 935 290 121 22 chr1 37028356 37028760 -205635593 + L2 LINE L2 2804 3247 -66 2371 57 0 3 chr1 37028852 37029149 -205635204 - AluY SINE Alu -15 296 1 226 199 221 38 chr1 37029370 37029501 -205634852 - MIR SINE MIR -50 212 58 1950 112 3 3 chr1 37029993 37030279 -205634074 + AluSx SINE Alu 1 286 -26 2188 79 3 3 chr1 37030434 37030724 -205633629 - AluSc SINE Alu -19 290 1 2147 99 3 3 chr1 37030729 37031033 -205633320 - AluSx SINE Alu -8 304 1 1707 126 31 11 chr1 37031357 37031643 -205632710 - AluSx SINE Alu -20 292 1 1894 152 10 0 chr1 37033024 37033327 -205631026 + AluJo SINE Alu 1 306 -6 258 194 0 0 chr1 37033726 37033788 -205630565 + A-rich Low_complexity Low_complexity 1 62 0 194 329 195 18 chr1 37034289 37034669 -205629684 + L2 LINE L2 2531 2977 -337 1818 129 21 0 chr1 37034782 37035062 -205629291 - AluSx SINE Alu -12 300 15 239 231 77 0 chr1 37035725 37035790 -205628563 + MIR SINE MIR 39 108 -100 324 330 32 38 chr1 37035808 37035993 -205628360 + MER5A DNA MER1_type 3 186 -3 437 248 48 48 chr1 37035823 37035968 -205628385 - MER5B DNA MER1_type -3 175 31 691 287 100 45 chr1 37035988 37036277 -205628076 - L3 LINE CR1 -44 1533 1229 1527 176 38 3 chr1 37036536 37036825 -205627528 + AluJo SINE Alu 1 299 -13 2062 121 10 0 chr1 37036857 37037155 -205627198 + AluSg SINE Alu 1 301 -9 2120 109 0 0 chr1 37037410 37037704 -205626649 + AluY SINE Alu 1 294 -17 180 0 0 0 chr1 37037707 37037727 -205626626 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 313 299 150 17 chr1 37038151 37038352 -205626001 - MIR SINE MIR -13 249 16 2393 62 0 3 chr1 37038453 37038760 -205625593 + AluY SINE Alu 1 306 -5 189 309 36 18 chr1 37038819 37038874 -205625479 + MIR3 SINE MIR 15 70 -138 1904 107 17 27 chr1 37038924 37039223 -205625130 + AluSc SINE Alu 1 296 -13 201 306 37 74 chr1 37039223 37039331 -205625022 + MIR SINE MIR 126 229 -33 251 254 52 10 chr1 37039895 37039976 -205624377 + MIR SINE MIR 16 97 -111 549 269 183 18 chr1 37040194 37040285 -205624068 + MIR SINE MIR 3 78 -184 2440 61 0 0 chr1 37040285 37040582 -205623771 - AluY SINE Alu -14 297 1 549 269 183 18 chr1 37040582 37040709 -205623644 + MIR SINE MIR 78 257 -5 1517 159 43 33 chr1 37041464 37041766 -205622587 - AluJb SINE Alu -7 305 1 258 260 173 55 chr1 37042713 37042840 -205621513 + L2 LINE L2 3171 3312 -1 2179 100 3 0 chr1 37042972 37043273 -205621080 + AluSx SINE Alu 1 302 -10 200 182 0 0 chr1 37045492 37045525 -205618828 + (CA)n Simple_repeat Simple_repeat 2 34 0 2148 76 7 33 chr1 37045566 37045867 -205618486 - AluSx SINE Alu -19 293 1 1600 167 44 7 chr1 37046131 37046425 -205617928 - AluJb SINE Alu -1 311 7 2303 76 7 0 chr1 37046429 37046731 -205617622 - AluSc SINE Alu -5 304 1 1883 130 10 13 chr1 37047394 37047693 -205616660 - AluSx SINE Alu -14 298 1 1518 178 0 53 chr1 37047906 37048055 -205616298 + AluJo SINE Alu 1 125 -187 2118 82 0 26 chr1 37048055 37048358 -205615995 + AluSg SINE Alu 1 295 -15 1518 178 0 53 chr1 37048358 37048529 -205615824 + AluJo SINE Alu 125 304 -8 1335 161 51 71 chr1 37048557 37048868 -205615485 - AluJo SINE Alu -7 305 1 2355 73 0 10 chr1 37049493 37049806 -205614547 - AluSq SINE Alu -3 310 1 2186 97 3 0 chr1 37050051 37050351 -205614002 + AluSq SINE Alu 1 301 -12 301 355 47 55 chr1 37050471 37050727 -205613626 + L2 LINE L2 2903 3156 -116 1942 108 0 58 chr1 37051044 37051369 -205612984 + AluJb SINE Alu 3 308 -4 1577 148 0 93 chr1 37051542 37051678 -205612675 + AluJb SINE Alu 1 148 -164 2019 108 3 38 chr1 37051678 37051993 -205612360 + AluSx SINE Alu 1 304 -8 1577 148 0 93 chr1 37051993 37052200 -205612153 + AluJb SINE Alu 148 312 0 191 292 56 11 chr1 37052527 37052616 -205611737 + L2 LINE L2 2556 2648 -666 697 157 19 0 chr1 37052788 37052896 -205611457 - FLAM_A SINE Alu -30 112 3 2056 121 0 0 chr1 37053146 37053436 -205610917 + AluSx SINE Alu 1 290 -22 352 200 150 57 chr1 37053788 37053928 -205610425 - MER103 DNA DNA -1 165 13 2313 70 0 13 chr1 37054029 37054327 -205610026 + AluY SINE Alu 1 294 -17 2274 55 0 45 chr1 37055350 37055658 -205608695 + AluY SINE Alu 1 294 -17 878 190 6 0 chr1 37056089 37056247 -205608106 + FRAM SINE Alu 6 164 -12 1582 121 51 12 chr1 37056334 37056429 -205607924 + AluJo SINE Alu 26 116 -196 237 33 0 0 chr1 37056429 37056459 -205607894 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1582 121 51 12 chr1 37056459 37056619 -205607734 + AluJo SINE Alu 116 291 -21 474 280 52 28 chr1 37056961 37057144 -205607209 + MIR3 SINE MIR 8 189 -67 21 104 0 0 chr1 37057223 37057300 -205607053 + AT_rich Low_complexity Low_complexity 1 77 0 1955 134 13 0 chr1 37057565 37057863 -205606490 - AluSx SINE Alu -10 302 1 2671 45 0 7 chr1 37059028 37059338 -205605015 + AluSx SINE Alu 1 308 -4 204 229 12 24 chr1 37059947 37060030 -205604323 + (CCG)n Simple_repeat Simple_repeat 1 82 0 207 248 0 30 chr1 37060063 37060164 -205604189 + G-rich Low_complexity Low_complexity 4 101 0 21 0 0 0 chr1 37060183 37060204 -205604149 + GC_rich Low_complexity Low_complexity 1 21 0 248 228 13 13 chr1 37060314 37060393 -205603960 + (CCG)n Simple_repeat Simple_repeat 2 80 0 225 234 0 0 chr1 37060519 37060566 -205603787 + (CGGGG)n Simple_repeat Simple_repeat 5 51 0 624 243 93 55 chr1 37061207 37061266 -205603087 - MLT1J LTR MaLR 0 511 456 1824 171 13 7 chr1 37061266 37061565 -205602788 - AluJo SINE Alu -11 301 1 624 243 93 55 chr1 37061565 37061744 -205602609 - MLT1J LTR MaLR -55 456 285 2609 58 0 0 chr1 37061744 37062053 -205602300 + AluY SINE Alu 1 309 -2 624 243 93 55 chr1 37062053 37062216 -205602137 - MLT1J LTR MaLR -226 285 41 1877 171 0 0 chr1 37062223 37062509 -205601844 + AluJb SINE Alu 1 286 -26 672 262 33 0 chr1 37062574 37062757 -205601596 - L2 LINE L2 -1216 2098 1910 352 211 36 79 chr1 37062849 37063045 -205601308 - MLT1J2 LTR MaLR -2 428 266 2178 90 18 0 chr1 37063087 37063390 -205600963 + AluSx SINE Alu 1 308 0 427 372 73 21 chr1 37063993 37064415 -205599938 - L2 LINE L2 -3 3269 2826 2163 131 3 6 chr1 37064418 37064731 -205599622 + AluSx SINE Alu 1 312 0 1081 148 0 0 chr1 37064944 37065133 -205599220 - L1MB3 LINE L1 0 6183 5995 229 251 151 67 chr1 37065194 37065373 -205598980 - MLT1K LTR MaLR -269 319 126 2264 108 3 19 chr1 37065672 37065988 -205598365 - AluSx SINE Alu -1 311 1 2238 129 0 0 chr1 37065990 37066292 -205598061 - AluSx SINE Alu -10 302 1 235 348 22 22 chr1 37066564 37066699 -205597654 + L2 LINE L2 2508 2642 -672 204 318 67 31 chr1 37066763 37066958 -205597395 + L2 LINE L2 2836 3037 -235 513 233 31 8 chr1 37067039 37067168 -205597185 + MER94 DNA DNA 1 132 -2 349 239 128 0 chr1 37067205 37067322 -205597031 - MIR SINE MIR -54 208 77 1006 177 0 0 chr1 37067521 37067679 -205596674 - FAM SINE Alu -8 41 1 633 197 49 76 chr1 37067784 37068007 -205596346 - L2 LINE L2 0 3313 3097 183 222 156 11 chr1 37068000 37068090 -205596263 - L2 LINE L2 -775 2539 2437 * 186 43 0 0 chr1 37069030 37069053 -205595300 + (T)n Simple_repeat Simple_repeat 1 23 0 6658 78 13 33 chr1 37069065 37070213 -205594140 - SVA Other Other -551 1386 433 1345 91 23 91 chr1 37070230 37070615 -205593738 - SVA Other Other -520 866 508 5858 80 28 6 chr1 37070631 37071431 -205592922 - SVA Other Other -520 866 50 342 0 0 0 chr1 37071436 37071474 -205592879 + (GGGAGA)n Simple_repeat Simple_repeat 2 39 0 2420 54 34 0 chr1 37071961 37072080 -205592273 + AluY SINE Alu 2 115 -196 423 0 0 0 chr1 37072080 37072127 -205592226 + (CA)n Simple_repeat Simple_repeat 2 48 0 2420 54 34 0 chr1 37072127 37072301 -205592052 + AluY SINE Alu 115 305 -6 519 220 65 30 chr1 37072353 37072521 -205591832 - Charlie8 DNA MER1_type -2185 232 59 2327 89 0 0 chr1 37072673 37072982 -205591371 + AluSg SINE Alu 1 309 0 1025 127 18 0 chr1 37073758 37073923 -205590430 + Tigger5 DNA MER2_type 2130 2297 -26 923 103 0 0 chr1 37073933 37074050 -205590303 + AluSq/x SINE Alu 1 117 -195 372 80 0 0 chr1 37074050 37074100 -205590253 + Alu SINE Alu 245 294 -7 504 273 28 40 chr1 37074108 37074167 -205590186 - MIR SINE MIR -23 239 181 2153 119 7 0 chr1 37074167 37074462 -205589891 - AluSx SINE Alu -15 297 1 504 273 28 40 chr1 37074462 37074578 -205589775 - MIR SINE MIR -81 181 66 1759 166 3 11 chr1 37074607 37074891 -205589462 + AluJo SINE Alu 18 299 -13 402 21 0 0 chr1 37074960 37075007 -205589346 + (CA)n Simple_repeat Simple_repeat 1 47 0 291 275 60 7 chr1 37075142 37075291 -205589062 + L1ME4a LINE L1 5963 6119 -2 875 111 103 0 chr1 37075373 37075499 -205588854 + AluSx SINE Alu 1 139 -173 1354 106 17 0 chr1 37076124 37076303 -205588050 + AluSx SINE Alu 119 300 -10 563 242 71 79 chr1 37076375 37076627 -205587726 - MIR SINE MIR 0 262 13 315 201 175 25 chr1 37076720 37076842 -205587511 - MIR3 SINE MIR -40 168 42 267 291 17 68 chr1 37077221 37077338 -205587015 - MIR SINE MIR 0 262 152 251 299 0 13 chr1 37077340 37077417 -205586936 + MIR SINE MIR 31 106 -156 892 209 96 115 chr1 37077417 37077836 -205586517 - L2 LINE L2 -3 3310 2898 2242 90 4 0 chr1 37077836 37078169 -205586184 + AluSc SINE Alu 1 334 0 892 209 96 115 chr1 37078169 37078218 -205586135 - L2 LINE L2 -415 2898 2850 300 267 124 55 chr1 37078248 37078450 -205585903 + L2 LINE L2 3098 3313 0 369 0 0 0 chr1 37078453 37078494 -205585859 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 543 253 7 33 chr1 37078599 37078749 -205585604 + MIR SINE MIR 36 181 -81 2207 120 3 0 chr1 37079117 37079416 -205584937 - AluSx SINE Alu -12 300 1 1739 48 68 0 chr1 37079476 37079682 -205584671 - AluY SINE Alu -91 220 1 596 245 61 0 chr1 37079682 37079853 -205584500 - MIR SINE MIR -58 204 20 295 282 122 15 chr1 37080243 37080374 -205583979 + MIR3 SINE MIR 12 156 -52 600 284 101 0 chr1 37080872 37081080 -205583273 - MIR SINE MIR -32 230 2 418 275 114 0 chr1 37081095 37081226 -205583127 - MIR3 SINE MIR -10 198 53 261 331 99 8 chr1 37081511 37081632 -205582721 + L2 LINE L2 2969 3100 -172 357 184 66 0 chr1 37081993 37082069 -205582284 + MLT1D LTR MaLR 259 339 -166 2482 93 0 0 chr1 37082133 37082435 -205581918 - AluSx SINE Alu -10 302 1 2442 74 13 3 chr1 37083306 37083605 -205580748 + AluSg SINE Alu 1 302 -8 1879 119 43 40 chr1 37083838 37084141 -205580212 - AluJb SINE Alu -8 304 1 301 274 29 103 chr1 37084199 37084374 -205579979 + MIR SINE MIR 48 209 -53 * 788 159 147 0 chr1 37084366 37084523 -205579830 + MER5A DNA MER1_type 10 189 0 192 309 0 0 chr1 37084704 37084759 -205579594 - L3 LINE CR1 -97 1480 1426 410 282 90 41 chr1 37084917 37085162 -205579191 - L3 LINE CR1 -507 1070 814 618 277 78 19 chr1 37085545 37085713 -205578640 + MIR SINE MIR 23 180 -82 2415 96 0 0 chr1 37085713 37086015 -205578338 + AluSx SINE Alu 1 302 -10 2511 85 0 3 chr1 37086015 37086321 -205578032 + AluY SINE Alu 1 305 -6 618 277 78 19 chr1 37086321 37086357 -205577996 + MIR SINE MIR 179 240 -22 250 326 11 0 chr1 37086551 37086640 -205577713 + L2 LINE L2 3145 3234 -38 2228 113 0 44 chr1 37086686 37087005 -205577348 + AluSx SINE Alu 1 305 -7 221 250 0 0 chr1 37087015 37087071 -205577282 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 419 202 78 39 chr1 37087952 37088081 -205576272 + MIR SINE MIR 79 212 -50 214 309 62 0 chr1 37088858 37088939 -205575414 + MIR SINE MIR 63 148 -114 2045 153 10 0 chr1 37088939 37089246 -205575107 - AluJo SINE Alu -2 310 1 288 236 41 86 chr1 37089289 37089479 -205574874 + MIR SINE MIR 36 219 -43 204 220 0 20 chr1 37089762 37089812 -205574541 + MIR SINE MIR 38 86 -122 395 119 48 71 chr1 37089887 37089971 -205574382 + MLT2B1 LTR ERVL 341 422 -98 216 258 52 31 chr1 37089995 37090092 -205574261 + MIR SINE MIR 63 161 -101 2376 100 0 10 chr1 37090131 37090442 -205573911 + AluSg SINE Alu 1 308 -2 2545 66 10 0 chr1 37090487 37090792 -205573561 - AluY SINE Alu -3 308 1 351 278 47 24 chr1 37090884 37091053 -205573300 + L2 LINE L2 2907 3079 -193 255 217 22 11 chr1 37091569 37091661 -205572692 + CT-rich Low_complexity Low_complexity 4 96 0 2294 116 0 0 chr1 37091671 37091963 -205572390 - AluSx SINE Alu -20 292 1 2078 152 3 3 chr1 37091963 37092266 -205572087 - AluJo SINE Alu -9 303 1 183 354 89 0 chr1 37093044 37093123 -205571230 + MIR SINE MIR 36 121 -87 198 329 29 14 chr1 37093262 37093332 -205571021 + MIR SINE MIR 37 107 -101 225 272 196 0 chr1 37093466 37093558 -205570795 + L2 LINE L2 3137 3246 -26 184 301 96 0 chr1 37094338 37094411 -205569942 + L2 LINE L2 3154 3233 -39 341 304 16 8 chr1 37094551 37094676 -205569677 - MIR3 SINE MIR -78 130 5 516 276 93 57 chr1 37095078 37095262 -205569091 + MIR SINE MIR 8 205 -57 1982 117 55 14 chr1 37095262 37095384 -205568969 + AluSx SINE Alu 1 117 -195 2959 0 0 0 chr1 37095384 37095691 -205568662 + AluYa5 SINE Alu 1 307 -4 1982 117 55 14 chr1 37095691 37095859 -205568494 + AluSx SINE Alu 117 303 -9 516 276 93 57 chr1 37095859 37095920 -205568433 + MIR SINE MIR 205 262 0 423 345 115 11 chr1 37097076 37097337 -205567016 + L2 LINE L2 2985 3272 0 331 316 103 0 chr1 37097341 37097458 -205566895 - MIR SINE MIR -108 154 26 500 290 130 53 chr1 37097678 37097853 -205566500 + MIR SINE MIR 8 203 -59 2164 128 3 0 chr1 37097853 37098149 -205566204 - AluSx SINE Alu -14 298 2 500 290 130 53 chr1 37098149 37098180 -205566173 + MIR SINE MIR 203 230 -32 627 275 150 73 chr1 37098446 37098900 -205565453 + MLT1K LTR MaLR 100 588 0 225 325 65 0 chr1 37098938 37099015 -205565338 - L2 LINE L2 0 3272 3191 504 236 203 0 chr1 37099211 37099359 -205564994 + MLT1K LTR MaLR 156 333 -255 206 278 72 21 chr1 37099437 37099534 -205564819 - L2 LINE L2 -3 3269 3168 284 256 77 12 chr1 37099626 37099794 -205564559 - L1ME4a LINE L1 -4 6117 5939 1217 146 51 8 chr1 37099804 37100057 -205564296 + L1MD3 LINE L1 7732 7995 0 300 83 0 83 chr1 37100090 37100150 -205564203 + FLAM_A SINE Alu 79 133 0 262 264 256 25 chr1 37100162 37100404 -205563949 - L1ME4a LINE L1 -208 5913 5616 300 254 100 9 chr1 37100417 37100527 -205563826 - MIR SINE MIR -10 252 133 392 314 54 27 chr1 37101100 37101285 -205563068 - MIR SINE MIR -61 201 12 1659 107 176 14 chr1 37101605 37101895 -205562458 - MER1B DNA MER1_type 0 337 1 2315 111 0 7 chr1 37102274 37102581 -205561772 - AluSg SINE Alu -5 305 1 398 286 233 14 chr1 37103405 37103615 -205560738 + MIR SINE MIR 7 262 0 184 227 253 0 chr1 37103859 37103934 -205560419 - MIR SINE MIR -96 112 19 450 253 104 40 chr1 37104175 37104377 -205559976 + MIR SINE MIR 16 230 -32 296 338 58 7 chr1 37105096 37105250 -205559103 - MIR SINE MIR -6 256 95 195 286 24 24 chr1 37105229 37105313 -205559040 - MIR3 SINE MIR -122 86 3 * 21 0 0 0 chr1 37106189 37106210 -205558143 + AT_rich Low_complexity Low_complexity 1 21 0 1892 185 0 3 chr1 37108207 37108515 -205555838 + AluJb SINE Alu 1 307 -5 236 30 30 0 chr1 37108577 37108610 -205555743 + (CA)n Simple_repeat Simple_repeat 1 34 0 266 230 0 40 chr1 37110017 37110091 -205554262 + A-rich Low_complexity Low_complexity 5 75 0 2081 117 27 7 chr1 37111201 37111499 -205552854 + AluSx SINE Alu 1 304 -8 853 126 0 30 chr1 37111666 37111801 -205552552 + MER2 DNA MER2_type 2 132 -213 2433 89 0 0 chr1 37111801 37112103 -205552250 - AluY SINE Alu -9 302 1 1323 145 9 41 chr1 37112105 37112271 -205552082 - AluJo SINE Alu -15 297 127 217 47 47 23 chr1 37112271 37112314 -205552039 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2345 78 0 3 chr1 37112314 37112597 -205551756 - AluSg SINE Alu -28 282 1 1323 145 9 41 chr1 37112597 37112650 -205551703 - AluJo SINE Alu -183 129 84 465 233 93 56 chr1 37112652 37112867 -205551486 + MER2 DNA MER2_type 123 345 0 1616 180 3 39 chr1 37113348 37113654 -205550699 - AluJb SINE Alu -13 299 5 261 152 0 0 chr1 37113977 37114023 -205550330 + Alu SINE Alu 250 295 -6 208 346 13 0 chr1 37114111 37114189 -205550164 + MIR SINE MIR 30 108 -100 322 255 71 14 chr1 37115350 37115491 -205548862 + L1ME LINE L1 5676 5824 -297 369 0 0 0 chr1 37115781 37115822 -205548531 + (CA)n Simple_repeat Simple_repeat 2 42 0 469 293 74 44 chr1 37115980 37116155 -205548198 - MIR SINE MIR -7 255 87 2250 119 0 0 chr1 37116155 37116449 -205547904 + AluSx SINE Alu 1 294 -18 2050 120 10 10 chr1 37116457 37116749 -205547604 + AluSx SINE Alu 1 292 -20 469 293 74 44 chr1 37116749 37116793 -205547560 - MIR SINE MIR -181 81 20 2142 134 7 3 chr1 37117944 37118249 -205546104 - AluSx SINE Alu -6 306 1 1255 212 93 14 chr1 37118873 37118994 -205545359 + AluJo SINE Alu 1 111 -201 306 0 0 0 chr1 37118994 37119028 -205545325 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1255 212 93 14 chr1 37119028 37119184 -205545169 + AluJo SINE Alu 111 300 -12 2407 90 7 0 chr1 37119481 37119780 -205544573 + AluSx SINE Alu 1 301 -11 702 161 265 0 chr1 37119824 37119986 -205544367 + MER3 DNA MER1_type 5 209 0 806 186 93 89 chr1 37120199 37120435 -205543918 + MIR SINE MIR 26 262 0 559 230 14 36 chr1 37120465 37120498 -205543855 + MIR SINE MIR 117 149 -113 2218 118 6 19 chr1 37120498 37120811 -205543542 + AluSg SINE Alu 2 310 0 559 230 14 36 chr1 37120811 37120916 -205543437 + MIR SINE MIR 149 252 -10 454 272 172 11 chr1 37121001 37121181 -205543172 + MIR SINE MIR 48 256 -6 532 279 85 36 chr1 37121189 37121436 -205542917 + MIR SINE MIR 2 260 -2 228 292 92 33 chr1 37121460 37121580 -205542773 - L2 LINE L2 0 3313 3187 1086 128 12 6 chr1 37121778 37121964 -205542389 - AluJb SINE Alu 0 312 127 2392 92 0 3 chr1 37122119 37122424 -205541929 + AluSc SINE Alu 1 304 -5 2076 111 47 10 chr1 37122436 37122734 -205541619 + AluSx SINE Alu 1 309 -3 2395 85 0 28 chr1 37123052 37123370 -205540983 + AluSg1 SINE Alu 1 309 0 770 247 87 23 chr1 37123425 37123644 -205540709 + MIR SINE MIR 17 249 -13 362 268 148 21 chr1 37123775 37123814 -205540539 - MER5A DNA MER1_type -26 163 130 2175 91 30 20 chr1 37123814 37124112 -205540241 + AluSp SINE Alu 1 301 -12 362 268 148 21 chr1 37124112 37124214 -205540139 - MER5A DNA MER1_type -59 130 4 293 269 173 10 chr1 37124378 37124482 -205539871 - MER5A DNA MER1_type -1 188 68 514 335 50 32 chr1 37124509 37124730 -205539623 + MIR SINE MIR 12 236 -26 1808 186 6 37 chr1 37124806 37125002 -205539351 - 7SLRNA srpRNA srpRNA -3 317 133 2097 155 3 0 chr1 37125002 37125305 -205539048 - AluJo SINE Alu -8 304 1 1808 186 6 37 chr1 37125305 37125435 -205538918 - 7SLRNA srpRNA srpRNA -187 133 1 1581 193 50 0 chr1 37125878 37126158 -205538195 + AluJo SINE Alu 1 294 -18 552 250 151 19 chr1 37126213 37126425 -205537928 - MIR SINE MIR -18 244 5 448 212 26 9 chr1 37126469 37126582 -205537771 + L1ME3A LINE L1 6003 6117 -53 596 251 107 23 chr1 37126881 37127096 -205537257 + MIR SINE MIR 30 262 0 371 241 177 34 chr1 37127140 37127304 -205537049 + MIR SINE MIR 3 186 -67 370 289 38 102 chr1 37127749 37127984 -205536369 - MER102b DNA MER1_type -4 337 118 1401 202 39 76 chr1 37128009 37128474 -205535879 + L1MC5 LINE L1 7002 7483 -478 2449 92 10 0 chr1 37128474 37128780 -205535573 + AluY SINE Alu 1 309 -2 1401 202 39 76 chr1 37128780 37128846 -205535507 + L1MC5 LINE L1 7483 7515 -446 1317 186 109 4 chr1 37128846 37129120 -205535233 + AluJo SINE Alu 5 307 -5 302 213 103 22 chr1 37129161 37129297 -205535056 + L1MC5 LINE L1 7646 7792 -169 232 222 97 0 chr1 37129328 37129400 -205534953 + L1MC5 LINE L1 7847 7925 -36 1425 150 0 5 chr1 37129474 37129681 -205534672 - AluJb SINE Alu -20 292 87 205 176 59 39 chr1 37129983 37130034 -205534319 - L2 LINE L2 -14 3299 3248 351 0 0 0 chr1 37130042 37130081 -205534272 + (CA)n Simple_repeat Simple_repeat 2 40 0 244 270 0 32 chr1 37130108 37130171 -205534182 + L2 LINE L2 3194 3254 -59 271 247 55 0 chr1 37130193 37130266 -205534087 - MIR SINE MIR -95 167 91 1680 157 107 11 chr1 37130363 37130643 -205533710 + AluJo SINE Alu 5 311 -1 226 267 133 0 chr1 37131405 37131480 -205532873 + MIR3 SINE MIR 92 176 -32 336 250 0 0 chr1 37131482 37131578 -205532775 + A-rich Low_complexity Low_complexity 1 96 0 521 242 87 70 chr1 37132773 37133062 -205531291 + L1ME LINE L1 5514 5777 -344 2181 109 3 0 chr1 37133148 37133431 -205530922 + AluSq SINE Alu 1 284 -29 2433 73 0 7 chr1 37133842 37134145 -205530208 - AluY SINE Alu -10 301 1 245 296 99 46 chr1 37134208 37134360 -205529993 - MIR SINE MIR -56 206 47 2114 106 13 13 chr1 37134363 37134664 -205529689 + AluSx SINE Alu 1 301 -11 2272 94 3 3 chr1 37134978 37135277 -205529076 - AluSx SINE Alu -13 299 1 1140 217 118 73 chr1 37135291 37135825 -205528528 + LTR36 LTR ERV1 54 611 0 1045 202 9 5 chr1 37135826 37136039 -205528314 + MLT1D LTR MaLR 292 505 0 2111 92 21 21 chr1 37136187 37136498 -205527855 + AluSx SINE Alu 1 311 0 1323 173 71 0 chr1 37136515 37136740 -205527613 + AluJo SINE Alu 6 246 -66 730 183 15 0 chr1 37136741 37136872 -205527481 + FRAM SINE Alu 1 40 0 436 162 27 0 chr1 37136872 37136946 -205527407 + Tigger4(Zombi) DNA MER2_type 95 170 -2561 2630 111 57 5 chr1 37136949 37137390 -205526963 + Tigger4(Zombi) DNA MER2_type 2268 2731 0 2259 109 0 3 chr1 37137558 37137851 -205526502 + AluSx SINE Alu 1 292 -20 2461 99 0 3 chr1 37137853 37138167 -205526186 + AluSq SINE Alu 1 313 0 275 275 119 9 chr1 37138533 37138642 -205525711 - MLT1K LTR MaLR -464 124 4 405 253 0 0 chr1 37138820 37138899 -205525454 - L2 LINE L2 -4 3268 3190 704 158 0 0 chr1 37138915 37139016 -205525337 + FLAM_C SINE Alu 3 103 -40 828 226 0 38 chr1 37139243 37139295 -205525058 + AluJo SINE Alu 120 172 -140 2196 114 112 83 chr1 37139295 37139767 -205524586 + LTR19A LTR ERV1 1 486 0 828 226 0 38 chr1 37139767 37139900 -205524453 + AluJo SINE Alu 172 298 -14 2376 119 0 0 chr1 37139935 37140245 -205524108 + AluSx SINE Alu 1 310 -2 403 255 19 9 chr1 37140403 37140509 -205523844 - L2 LINE L2 -250 3022 2916 2305 117 0 0 chr1 37140520 37140819 -205523534 + AluSx SINE Alu 1 299 -13 385 269 65 43 chr1 37141487 37141673 -205522680 + MLT1L LTR MaLR 424 613 -2 654 274 30 0 chr1 37141674 37141838 -205522515 + MIR SINE MIR 94 262 0 2319 110 3 0 chr1 37142004 37142303 -205522050 - AluSx SINE Alu -12 300 1 2309 102 10 13 chr1 37142309 37142623 -205521730 - AluSq SINE Alu 0 313 1 220 217 0 0 chr1 37142898 37142944 -205521409 - MIR SINE MIR -216 46 1 278 224 0 0 chr1 37143035 37143093 -205521260 - MLT1I LTR MaLR 0 409 352 752 191 121 6 chr1 37143199 37143356 -205520997 - MER63A DNA MER1_type -35 175 1 299 218 6 128 chr1 37143356 37143512 -205520841 - MLT1I LTR MaLR -204 205 69 226 190 76 51 chr1 37143593 37143672 -205520681 - L2 LINE L2 -1366 1948 1868 206 302 31 31 chr1 37143731 37143827 -205520526 - MIR SINE MIR -2 260 165 1249 131 0 0 chr1 37143836 37144004 -205520349 - AluSc SINE Alu -13 296 129 307 244 11 67 chr1 37144010 37144100 -205520253 - MIR SINE MIR -106 156 72 731 250 73 32 chr1 37144124 37144438 -205519915 + MLT1I LTR MaLR 1 332 -77 2470 100 0 0 chr1 37144438 37144749 -205519604 - AluSx SINE Alu -1 311 1 731 250 73 32 chr1 37144749 37144778 -205519575 + MLT1I LTR MaLR 332 358 -51 324 74 6 6 chr1 37145333 37145390 -205518963 - Alu SINE Alu -267 41 1 2049 155 0 0 chr1 37145396 37145693 -205518660 + AluJb SINE Alu 1 297 -15 1374 209 80 25 chr1 37145693 37146091 -205518262 - MER44D DNA MER2_type -130 475 1 1531 264 35 17 chr1 37146093 37146555 -205517798 - MLT1J LTR MaLR -7 504 35 21 36 0 0 chr1 37146857 37146885 -205517468 + GC_rich Low_complexity Low_complexity 1 28 0 2830 79 21 68 chr1 37146936 37148078 -205516275 + SVA Other Other 393 868 -592 7058 65 3 41 chr1 37148091 37149083 -205515270 + SVA Other Other 433 1386 0 2170 119 3 0 chr1 37149374 37149669 -205514684 + AluSc SINE Alu 14 309 0 1974 148 0 17 chr1 37149672 37149970 -205514383 + AluSg SINE Alu 1 293 -17 503 244 37 74 chr1 37149970 37150105 -205514248 + L2 LINE L2 3141 3270 -2 648 156 230 37 chr1 37150206 37150341 -205514012 - AluJb SINE Alu -18 294 134 2400 100 7 0 chr1 37150341 37150650 -205513703 - AluSx SINE Alu -1 311 1 536 218 30 8 chr1 37151462 37151595 -205512758 - MLT1G LTR MaLR 0 590 455 771 241 6 0 chr1 37151598 37151760 -205512593 + MLT1F LTR MaLR 4 166 -376 813 127 0 108 chr1 37151761 37151919 -205512434 + AluJo SINE Alu 1 141 -171 1146 168 15 10 chr1 37151921 37152124 -205512229 + AluJo SINE Alu 98 301 -11 1595 185 92 14 chr1 37152124 37152481 -205511872 + MLT1F LTR MaLR 158 542 0 922 230 200 14 chr1 37152481 37152843 -205511510 - MLT1G LTR MaLR -131 459 60 2697 41 0 13 chr1 37153055 37153370 -205510983 - AluY SINE Alu 0 311 1 2247 111 0 10 chr1 37153370 37153668 -205510685 - AluSx SINE Alu -17 295 1 308 283 54 11 chr1 37153836 37153928 -205510425 - MIR SINE MIR -146 116 21 332 344 10 0 chr1 37154437 37154533 -205509820 - L2 LINE L2 -30 3242 3146 1220 211 11 58 chr1 37154634 37154925 -205509428 + L1ME2 LINE L1 5804 6076 -88 2202 106 3 14 chr1 37154925 37155218 -205509135 + AluSg SINE Alu 1 290 -20 1220 211 11 58 chr1 37155218 37155287 -205509066 + L1ME2 LINE L1 6076 6147 -17 2146 119 20 7 chr1 37155322 37155616 -205508737 + AluSx SINE Alu 4 301 -11 1672 197 128 51 chr1 37155616 37155753 -205508600 + MLT1F LTR MaLR 13 138 -404 2253 114 0 7 chr1 37155753 37156050 -205508303 + AluSq SINE Alu 1 295 -18 1672 197 128 51 chr1 37156050 37156404 -205507949 + MLT1F LTR MaLR 138 542 0 3115 108 5 0 chr1 37156728 37157154 -205507199 + MSTC LTR MaLR 1 428 0 625 320 26 21 chr1 37157160 37157394 -205506959 - MIR SINE MIR 0 262 28 1461 96 0 25 chr1 37157781 37157980 -205506373 + AluSg SINE Alu 1 194 -116 502 261 51 13 chr1 37157998 37158155 -205506198 + MLT1K LTR MaLR 16 178 -410 372 167 0 0 chr1 37158241 37158301 -205506052 + AluSg/q SINE Alu 191 250 -53 1298 147 0 45 chr1 37158301 37158525 -205505828 + AluSg/x SINE Alu 85 298 -14 984 230 50 87 chr1 37158749 37159106 -205505247 - L2 LINE L2 0 3313 2970 6367 127 21 21 chr1 37159109 37160078 -205504275 + LTR5 LTR ERVK 1 969 0 4421 102 29 2 chr1 37160078 37160704 -205503649 + HERVK LTR ERVK 1 643 -6600 3165 77 36 18 chr1 37160719 37161865 -205502488 + HERVK11 LTR ERVK 206 2710 -5243 * 8164 49 2 0 chr1 37161847 37162818 -205501535 + HERVK11 LTR ERVK 2912 3884 -4069 948 108 7 0 chr1 37162792 37162931 -205501422 + HERVK11 LTR ERVK 4462 4601 -3352 * 8130 64 6 1 chr1 37162929 37163967 -205500386 + HERVK11 LTR ERVK 5525 6620 -1333 1357 155 13 77 chr1 37163976 37164286 -205500067 + LTR5 LTR ERVK 680 969 0 546 120 98 198 chr1 37164303 37164560 -205499793 + L1MC4 LINE L1 7827 7995 0 1834 148 30 3 chr1 37164571 37164869 -205499484 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr1 37164871 37164893 -205499460 + AT_rich Low_complexity Low_complexity 1 22 0 288 259 0 0 chr1 37164893 37164951 -205499402 - L2 LINE L2 -342 2971 2914 1447 174 0 8 chr1 37164968 37165227 -205499126 + AluJb SINE Alu 51 307 -5 645 256 267 19 chr1 37165345 37165775 -205498578 + MLT1K LTR MaLR 16 552 -36 335 321 38 34 chr1 37165817 37165976 -205498377 - L2 LINE L2 -218 3054 2892 1427 180 33 23 chr1 37165976 37166282 -205498071 + AluJo SINE Alu 2 310 -2 335 321 38 34 chr1 37166282 37166359 -205497994 - L2 LINE L2 -380 2892 2817 799 105 6 39 chr1 37166359 37166540 -205497813 + (GAA)n Simple_repeat Simple_repeat 3 177 0 643 267 58 75 chr1 37166540 37166885 -205497468 - L2 LINE L2 -411 2903 2565 497 273 47 51 chr1 37166907 37167276 -205497077 + MLT1H LTR MaLR 1 410 -132 1387 195 152 40 chr1 37167276 37167396 -205496957 - MLT1A1 LTR MaLR 0 365 260 1777 136 25 0 chr1 37167396 37167552 -205496801 - AluJb SINE Alu -19 293 125 207 0 0 0 chr1 37167552 37167575 -205496778 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1777 136 25 0 chr1 37167575 37167704 -205496649 - AluJb SINE Alu -187 125 1 1387 195 152 40 chr1 37167704 37167911 -205496442 - MLT1A1 LTR MaLR -105 260 1 698 274 10 10 chr1 37167911 37168112 -205496241 - MIR SINE MIR -60 202 2 1533 124 8 39 chr1 37168741 37168999 -205495354 + AluSx SINE Alu 40 289 -23 610 285 58 29 chr1 37169019 37169226 -205495127 - MIR SINE MIR -31 231 19 261 105 0 0 chr1 37169250 37169288 -205495065 - L1MA1 LINE L1 -4 6298 6261 1038 149 10 62 chr1 37169453 37169528 -205494825 + MER5A DNA MER1_type 2 79 -110 2336 93 0 3 chr1 37169528 37169839 -205494514 + AluSq SINE Alu 1 310 -3 1038 149 10 62 chr1 37169839 37169958 -205494395 + MER5A DNA MER1_type 79 186 -3 720 201 30 0 chr1 37170502 37170636 -205493717 + MIR SINE MIR 47 184 -78 471 213 66 33 chr1 37170661 37170783 -205493570 + MIR SINE MIR 68 193 -69 2136 116 10 10 chr1 37170784 37171095 -205493258 - AluSx SINE Alu -1 311 1 2053 90 52 0 chr1 37171109 37171399 -205492954 - AluSx SINE Alu -7 305 1 669 304 72 10 chr1 37171793 37172000 -205492353 + MIR SINE MIR 37 256 -6 1634 179 128 3 chr1 37172055 37172407 -205491946 - MSTD LTR MaLR 0 396 1 2023 130 0 3 chr1 37172422 37172722 -205491631 - AluSx SINE Alu -11 301 3 377 215 87 87 chr1 37172759 37172931 -205491422 + MLT1J LTR MaLR 12 183 -328 2101 170 36 45 chr1 37172937 37173407 -205490946 + MLT1C LTR MaLR 1 466 -1 574 294 73 0 chr1 37173762 37173939 -205490414 + MIR SINE MIR 2 191 -71 228 273 146 27 chr1 37174082 37174192 -205490161 - L2 LINE L2 0 3272 3150 2143 66 42 10 chr1 37174253 37174541 -205489812 - AluY SINE Alu -14 297 1 239 231 62 133 chr1 37174706 37174901 -205489452 - MIR3 SINE MIR -4 204 24 1967 152 0 0 chr1 37175009 37175312 -205489041 + AluJb SINE Alu 3 305 -7 2001 96 4 0 chr1 37175498 37175768 -205488585 + AluSq SINE Alu 1 271 -42 271 225 79 34 chr1 37176136 37176225 -205488128 - L2 LINE L2 -214 3058 2966 298 205 197 16 chr1 37177250 37177372 -205486981 - MIR3 SINE MIR -36 172 29 256 286 165 0 chr1 37177491 37177582 -205486771 - MIR3 SINE MIR -3 205 100 195 306 159 13 chr1 37178097 37178254 -205486099 + L2 LINE L2 2356 2535 -779 233 324 171 21 chr1 37178539 37178866 -205485487 + L2 LINE L2 2933 3308 -5 2001 114 0 10 chr1 37180189 37180487 -205483866 - AluSx SINE Alu -11 301 7 241 225 70 42 chr1 37180521 37180592 -205483761 - L2 LINE L2 -6 3307 3235 1292 262 65 16 chr1 37180703 37181089 -205483264 - L2 LINE L2 0 3313 2909 355 307 0 0 chr1 37181718 37181819 -205482534 - MIR SINE MIR -14 248 148 292 314 88 46 chr1 37182356 37182595 -205481758 + L2 LINE L2 1685 1933 -1381 2382 70 3 0 chr1 37182728 37183026 -205481327 - AluSp SINE Alu -14 299 1 2111 107 0 3 chr1 37183039 37183329 -205481024 - AluSg SINE Alu -21 289 1 521 301 198 47 chr1 37183599 37184640 -205479713 + L2 LINE L2 2090 3295 -18 612 276 191 5 chr1 37184671 37184881 -205479472 + MIR SINE MIR 2 250 -12 21 0 0 0 chr1 37184888 37184909 -205479444 + AT_rich Low_complexity Low_complexity 1 21 0 819 145 0 15 chr1 37184909 37185040 -205479313 + FLAM_C SINE Alu 1 129 -14 23 0 0 0 chr1 37185040 37185063 -205479290 + AT_rich Low_complexity Low_complexity 1 23 0 397 311 122 0 chr1 37185220 37185384 -205478969 + MIR SINE MIR 23 206 -56 403 272 149 56 chr1 37185512 37185658 -205478695 + MIR SINE MIR 36 206 -56 1069 214 37 0 chr1 37185658 37185873 -205478480 + MER58A DNA MER1_type 2 224 0 403 272 149 56 chr1 37185873 37185921 -205478432 + MIR SINE MIR 206 248 -14 4464 96 25 36 chr1 37186166 37186845 -205477508 - L1MA8 LINE L1 -3 6288 5616 1938 134 0 0 chr1 37186845 37187129 -205477224 - AluSx SINE Alu -24 288 5 4464 96 25 36 chr1 37187129 37187177 -205477176 - L1MA8 LINE L1 -675 5616 5569 550 209 17 191 chr1 37187230 37187460 -205476893 - MER91B DNA MER1_type 0 190 1 211 191 0 56 chr1 37187841 37187930 -205476423 + (GGCTG)n Simple_repeat Simple_repeat 2 85 0 283 316 160 11 chr1 37188156 37188343 -205476010 - L2 LINE L2 -218 3054 2840 1901 156 6 13 chr1 37189312 37189626 -205474727 - AluJo SINE Alu 0 312 1 362 278 150 9 chr1 37189707 37189901 -205474452 - MIR SINE MIR -12 250 34 266 377 0 0 chr1 37189926 37190040 -205474313 + MIR SINE MIR 32 145 -63 224 246 0 72 chr1 37190448 37190517 -205473836 - MIR SINE MIR -110 152 89 382 220 106 38 chr1 37190994 37191224 -205473129 + HAL1b LINE L1 1232 1338 -10 2877 121 2 46 chr1 37191224 37191439 -205472914 - Tigger2a DNA MER2_type -2274 434 248 2118 116 0 0 chr1 37191439 37191731 -205472622 - AluSx SINE Alu -20 292 1 2877 121 2 46 chr1 37191731 37191969 -205472384 - Tigger2a DNA MER2_type -2460 248 1 382 220 106 38 chr1 37191969 37191980 -205472373 + HAL1b LINE L1 1338 1347 -1 437 244 92 43 chr1 37192684 37192848 -205471505 - MIR SINE MIR -83 179 8 428 262 19 9 chr1 37192900 37193007 -205471346 - MIR SINE MIR -119 143 36 308 330 0 11 chr1 37193283 37193374 -205470979 + MIR SINE MIR 38 127 -81 285 216 167 10 chr1 37193968 37194070 -205470283 - L1ME4a LINE L1 -188 5933 5816 2013 126 0 3 chr1 37194364 37194658 -205469695 - AluSx SINE Alu -19 293 1 2106 129 3 0 chr1 37195633 37195944 -205468409 + AluSx SINE Alu 1 312 0 225 0 0 0 chr1 37196158 37196183 -205468170 + (TG)n Simple_repeat Simple_repeat 1 25 0 407 200 52 161 chr1 37196250 37196463 -205467890 - L1MC5 LINE L1 -227 7734 7500 2108 113 0 0 chr1 37196463 37196754 -205467599 - AluSx SINE Alu -20 292 2 407 200 52 161 chr1 37196754 37196799 -205467554 - L1MC5 LINE L1 -461 7500 7452 727 211 0 0 chr1 37196799 37196932 -205467421 - FLAM_C SINE Alu 0 133 1 407 200 52 161 chr1 37196932 37197133 -205467220 - L1MC5 LINE L1 -509 7452 7324 22 35 0 0 chr1 37197334 37197363 -205466990 + AT_rich Low_complexity Low_complexity 1 29 0 1307 280 88 10 chr1 37197396 37197882 -205466471 - L1ME2 LINE L1 -272 5892 5369 2333 275 105 19 chr1 37197924 37199350 -205465003 + L2 LINE L2 1756 3309 -4 218 291 173 27 chr1 37199368 37199478 -205464875 + L2 LINE L2 3143 3268 -4 2167 108 0 0 chr1 37199479 37199776 -205464577 - AluSx SINE Alu -15 297 1 372 232 84 70 chr1 37200132 37200274 -205464079 - L1ME4a LINE L1 -11 6110 5967 204 40 0 0 chr1 37200286 37200311 -205464042 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 1287 181 68 19 chr1 37200314 37200580 -205463773 - AluJb SINE Alu -33 279 1 2017 131 64 22 chr1 37200977 37201337 -205463016 - THE1C LTR MaLR 0 375 1 8972 149 54 24 chr1 37201620 37202598 -205461755 + L1 LINE L1 3242 4190 -1956 1840 143 11 0 chr1 37202598 37202878 -205461475 + AluSx SINE Alu 1 283 -29 8972 149 54 24 chr1 37202878 37202892 -205461461 + L1 LINE L1 4190 4202 -1944 2029 129 7 0 chr1 37202892 37203202 -205461151 + AluSx SINE Alu 1 312 0 8972 149 54 24 chr1 37203202 37203926 -205460427 + L1 LINE L1 4202 5009 -1137 2130 115 0 0 chr1 37203936 37204232 -205460121 - AluSx SINE Alu -12 300 5 4007 124 44 15 chr1 37204232 37204910 -205459443 - L1MC1 LINE L1 -440 5893 5186 2123 116 0 13 chr1 37204910 37205220 -205459133 - AluSx SINE Alu -4 308 3 4007 124 44 15 chr1 37205220 37205309 -205459044 - L1MC1 LINE L1 -1147 5186 5101 592 260 68 7 chr1 37205322 37205468 -205458885 + L2 LINE L2 3112 3266 -47 1426 248 144 54 chr1 37205580 37206370 -205457983 + L1MEd LINE L1 285 1145 -4974 262 167 10 128 chr1 37206374 37206476 -205457877 - LTR50 LTR ERVL -17 771 667 434 305 17 0 chr1 37206747 37206865 -205457488 + MIR3 SINE MIR 68 187 -21 2094 92 20 10 chr1 37207201 37207496 -205456857 - AluSg SINE Alu -12 298 1 824 288 90 22 chr1 37207543 37208016 -205456337 + L1ME3A LINE L1 5290 5809 -353 271 256 22 80 chr1 37208147 37208284 -205456069 + L1ME3A LINE L1 5965 6093 -77 1752 131 34 17 chr1 37208564 37208861 -205455492 - AluY SINE Alu -9 302 1 562 227 0 93 chr1 37209190 37209340 -205455013 + MIR3 SINE MIR 21 156 -52 326 221 18 71 chr1 37209569 37209682 -205454671 - L1 LINE L1 -2371 3775 3669 1447 118 14 9 chr1 37209710 37209930 -205454423 - AluSg/x SINE Alu -7 305 85 2561 55 0 0 chr1 37209935 37210246 -205454107 - AluY SINE Alu 0 311 1 2071 93 48 0 chr1 37210246 37210536 -205453817 - AluSq SINE Alu -9 304 1 350 166 74 58 chr1 37210706 37210809 -205453544 + MIR SINE MIR 71 172 -63 2150 122 7 0 chr1 37211016 37211304 -205453049 + AluSx SINE Alu 1 290 -22 628 193 0 36 chr1 37211673 37211813 -205452540 + L2 LINE L2 3179 3313 0 449 313 139 51 chr1 37212124 37212533 -205451820 - L2 LINE L2 0 3272 2828 246 245 118 10 chr1 37212690 37212792 -205451561 + MIR SINE MIR 68 180 -82 1042 217 10 5 chr1 37213117 37213324 -205451029 - MIR SINE MIR -25 237 30 347 287 143 26 chr1 37214087 37214317 -205450036 - L2 LINE L2 -457 2857 2601 226 353 0 49 chr1 37214330 37214432 -205449921 + MIR SINE MIR 109 205 -57 195 250 104 0 chr1 37214531 37214579 -205449774 - MIR SINE MIR -145 117 65 206 276 40 0 chr1 37214911 37214987 -205449366 - L2 LINE L2 -601 2713 2635 613 291 62 26 chr1 37215213 37215440 -205448913 + MIR SINE MIR 22 256 -6 923 154 150 59 chr1 37216824 37216877 -205447476 - L1MB7 LINE L1 -20 6164 6117 2193 98 6 50 chr1 37216877 37217194 -205447159 + AluSx SINE Alu 3 305 -7 923 154 150 59 chr1 37217194 37217360 -205446993 - L1MB7 LINE L1 -67 6117 5925 959 246 188 34 chr1 37218530 37219042 -205445311 + L2 LINE L2 2741 3313 0 372 257 20 0 chr1 37219075 37219176 -205445177 + MIR SINE MIR 103 205 -57 2268 118 0 13 chr1 37219176 37219310 -205445043 + AluSg SINE Alu 1 135 -175 2145 127 7 3 chr1 37219310 37219610 -205444743 + AluSg SINE Alu 1 301 -9 2268 118 0 13 chr1 37219610 37219788 -205444565 + AluSg SINE Alu 135 309 -1 4206 44 0 0 chr1 37220117 37220640 -205443713 - L1PA5 LINE L1 -3 6151 5629 254 365 106 14 chr1 37220983 37221191 -205443162 + L2 LINE L2 2847 3073 -240 252 0 0 0 chr1 37221327 37221355 -205442998 + (TTTCC)n Simple_repeat Simple_repeat 5 32 0 681 228 160 49 chr1 37221379 37221473 -205442880 + L2 LINE L2 2973 3055 -258 823 148 0 15 chr1 37221473 37221608 -205442745 + FLAM_C SINE Alu 1 133 0 681 228 160 49 chr1 37221608 37221820 -205442533 + L2 LINE L2 3055 3313 0 233 349 75 9 chr1 37221996 37222102 -205442251 + L2 LINE L2 3155 3267 -5 956 161 21 5 chr1 37222357 37222543 -205441810 - MER53 DNA DNA 0 189 1 689 238 62 70 chr1 37223500 37223675 -205440678 + MIR SINE MIR 18 192 -70 1837 145 0 42 chr1 37223675 37223985 -205440368 + AluJb SINE Alu 1 297 -15 689 238 62 70 chr1 37223985 37224053 -205440300 + MIR SINE MIR 192 259 -3 196 292 100 39 chr1 37224057 37224187 -205440166 - MIR3 SINE MIR -68 140 3 243 229 14 43 chr1 37224407 37224477 -205439876 - L2 LINE L2 -943 2371 2304 189 297 0 99 chr1 37224597 37224688 -205439665 - L2 LINE L2 -258 3014 2933 2966 147 24 19 chr1 37224782 37225354 -205438999 + LTR51 LTR ERV1 2 671 0 2244 116 3 0 chr1 37225451 37225752 -205438601 - AluSq SINE Alu -11 302 1 1827 223 59 32 chr1 37225797 37226347 -205438006 + MLT1F1 LTR MaLR 1 567 0 324 252 151 17 chr1 37226831 37226950 -205437403 - L2 LINE L2 -3 3310 3176 780 192 19 83 chr1 37227002 37227268 -205437085 + MER33 DNA MER1_type 1 249 -75 264 194 0 69 chr1 37227334 37227406 -205436947 + MER33 DNA MER1_type 297 363 0 862 243 9 26 chr1 37227851 37228077 -205436276 - MER58A DNA MER1_type -1 223 2 369 303 126 44 chr1 37228077 37228371 -205435982 + L2 LINE L2 2954 3271 -1 213 365 152 0 chr1 37229518 37229663 -205434690 - MIR SINE MIR -48 214 48 197 314 0 0 chr1 37229757 37229808 -205434545 + MIR SINE MIR 212 262 0 558 255 32 13 chr1 37229820 37229977 -205434376 - MIR SINE MIR -62 200 41 244 295 289 18 chr1 37230091 37230257 -205434096 + L3 LINE CR1 1259 1469 -108 2033 89 21 18 chr1 37230600 37230913 -205433440 + AluSx SINE Alu 3 316 0 246 257 135 47 chr1 37231180 37231328 -205433025 + L2 LINE L2 2898 3058 -214 827 177 21 0 chr1 37231707 37231944 -205432409 + CT-rich Low_complexity Low_complexity 1 242 0 2048 141 13 3 chr1 37231958 37232263 -205432090 - AluSx SINE Alu -4 308 1 2433 92 3 0 chr1 37232311 37232614 -205431739 + AluSg SINE Alu 1 304 -6 398 304 44 6 chr1 37232656 37232814 -205431539 + MIR SINE MIR 35 198 -64 * 546 221 104 12 chr1 37232809 37232972 -205431381 + MIR SINE MIR 15 192 -70 315 304 18 27 chr1 37233110 37233222 -205431131 - MIR3 SINE MIR -14 194 84 470 133 67 153 chr1 37233956 37233975 -205430378 + L1ME4a LINE L1 5960 5979 -142 1022 164 198 57 chr1 37233975 37234238 -205430115 + AluJo SINE Alu 3 302 0 470 133 67 153 chr1 37234238 37234368 -205429985 + L1ME4a LINE L1 5979 6096 -25 258 280 51 34 chr1 37235770 37235888 -205428465 - MIR SINE MIR -59 149 30 221 236 181 24 chr1 37236552 37236679 -205427674 + MIR3 SINE MIR 21 167 -41 357 250 213 0 chr1 37236965 37237101 -205427252 + MIR3 SINE MIR 31 195 -13 742 77 10 0 chr1 37237342 37237446 -205426907 + L1PA10 LINE L1 6061 6165 -3 291 281 22 82 chr1 37238050 37238185 -205426168 - MIR3 SINE MIR 0 208 82 229 301 63 28 chr1 37238371 37238538 -205425815 + MIR SINE MIR 5 192 -70 2718 176 39 7 chr1 37239411 37239726 -205424627 + LTR64 LTR ERVK 1 342 -216 2370 65 10 7 chr1 37239726 37240019 -205424334 - AluSp SINE Alu -17 296 3 2718 176 39 7 chr1 37240019 37240244 -205424109 + LTR64 LTR ERVK 342 558 0 429 304 62 6 chr1 37240515 37240676 -205423677 - MIR SINE MIR -80 182 13 361 294 31 55 chr1 37240783 37240946 -205423407 + MIR SINE MIR 68 226 -36 389 359 145 15 chr1 37241456 37241849 -205422504 + LTR67 LTR ERVL 114 557 0 322 319 140 0 chr1 37242556 37242713 -205421640 - MIR3 SINE MIR -7 201 23 358 170 140 20 chr1 37243412 37243512 -205420841 + MIR3 SINE MIR 70 181 -27 243 267 163 0 chr1 37243525 37243611 -205420742 + L2 LINE L2 3168 3267 -5 214 224 0 0 chr1 37243624 37243673 -205420680 - MIR3 SINE MIR -6 202 154 1765 214 121 65 chr1 37243676 37244394 -205419959 + MER20B DNA MER1_type 23 780 -3 480 288 33 0 chr1 37244399 37244552 -205419801 - MIR3 SINE MIR -49 159 2 2173 130 0 3 chr1 37244731 37245031 -205419322 - AluSx SINE Alu -7 305 7 1916 167 0 0 chr1 37245057 37245338 -205419015 - AluJo SINE Alu -31 281 1 272 306 20 61 chr1 37245360 37245507 -205418846 + L2 LINE L2 3099 3239 -33 265 229 56 108 chr1 37247631 37247824 -205416529 - MIR SINE MIR -50 212 20 2520 81 0 3 chr1 37247867 37248175 -205416178 + AluSp SINE Alu 1 307 -6 472 284 91 25 chr1 37248209 37248406 -205415947 - MIR SINE MIR 0 262 53 1120 181 9 18 chr1 37248973 37249194 -205415159 + MER20 DNA MER1_type 1 219 0 287 265 57 11 chr1 37249244 37249332 -205415021 - MIR SINE MIR -55 153 76 212 286 18 0 chr1 37249330 37249386 -205414967 - L2 LINE L2 -1 3312 3256 * 561 286 169 19 chr1 37249444 37249710 -205414643 - L2 LINE L2 -49 3223 2918 377 121 0 0 chr1 37249748 37249815 -205414538 + Alu SINE Alu 1 53 -247 2399 86 0 0 chr1 37250101 37250393 -205413960 + AluSg SINE Alu 1 292 -18 2349 62 0 0 chr1 37250395 37250671 -205413682 + AluY SINE Alu 1 276 -35 2310 101 3 3 chr1 37251379 37251686 -205412667 + AluSx SINE Alu 1 307 -5 2280 76 0 63 chr1 37251688 37252003 -205412350 + AluSg SINE Alu 1 295 -15 2401 99 0 3 chr1 37252270 37252574 -205411779 + AluSq SINE Alu 1 303 -10 2412 73 39 25 chr1 37252574 37252909 -205411444 + MER4D LTR ERV1 511 853 -19 2085 145 0 3 chr1 37252909 37253205 -205411148 - AluSx SINE Alu -17 295 1 2412 73 39 25 chr1 37253205 37253226 -205411127 + MER4D LTR ERV1 853 872 0 348 309 233 37 chr1 37253239 37253977 -205410376 + L2 LINE L2 1753 2676 -638 2116 141 3 0 chr1 37253977 37254275 -205410078 - AluSx SINE Alu -13 299 1 348 309 233 37 chr1 37254275 37254374 -205409979 + L2 LINE L2 2676 2754 -560 1504 185 23 0 chr1 37254659 37254961 -205409392 + L1MB7 LINE L1 5728 6036 -148 2600 55 0 0 chr1 37254979 37255287 -205409066 + AluY SINE Alu 1 308 -3 365 261 42 34 chr1 37255413 37255532 -205408821 - L2 LINE L2 0 3313 3194 638 233 0 63 chr1 37255882 37256041 -205408312 - FRAM SINE Alu -17 149 1 2331 123 0 0 chr1 37256046 37256356 -205407997 - AluSg SINE Alu 0 310 1 472 91 26 0 chr1 37256358 37256435 -205407918 - Tigger1 DNA MER2_type -727 1691 1613 1622 71 5 0 chr1 37256436 37256634 -205407719 - AluSp SINE Alu -1 312 114 10152 50 8 107 chr1 37256736 37258248 -205406105 + SVA Other Other 20 1382 -4 9967 103 18 29 chr1 37258248 37258555 -205405798 + Tigger1 DNA MER2_type 872 1181 -1237 2063 109 0 67 chr1 37258555 37258709 -205405644 + AluSx SINE Alu 1 125 -187 2210 104 13 3 chr1 37258709 37259008 -205405345 + AluSg SINE Alu 1 302 -8 2063 109 0 67 chr1 37259008 37259165 -205405188 + AluSx SINE Alu 125 291 -21 9967 103 18 29 chr1 37259165 37259740 -205404613 + Tigger1 DNA MER2_type 1181 1761 -657 2880 16 0 0 chr1 37259740 37260051 -205404302 + AluYa5 SINE Alu 1 311 0 9967 103 18 29 chr1 37260051 37260732 -205403621 + Tigger1 DNA MER2_type 1761 2418 0 2057 148 0 0 chr1 37261117 37261414 -205402939 + AluY SINE Alu 4 300 -11 2232 116 0 0 chr1 37261434 37261735 -205402618 - AluSx SINE Alu -11 301 1 1045 273 134 31 chr1 37261757 37262144 -205402209 - L1MEc LINE L1 -4574 2548 2203 1702 178 24 10 chr1 37262144 37262442 -205401911 - AluJb SINE Alu -10 302 1 1045 273 134 31 chr1 37262442 37262835 -205401518 - L1MEc LINE L1 -4919 2203 1687 2300 74 35 0 chr1 37262873 37263194 -205401159 - AluY SINE Alu 0 311 1 260 301 0 0 chr1 37263198 37263291 -205401062 - L1MEc LINE L1 -4955 1468 1376 2156 122 0 10 chr1 37263989 37264283 -205400070 - AluSg SINE Alu -19 291 1 729 181 90 57 chr1 37264348 37264474 -205399879 + MER58C DNA MER1_type 33 168 -2252 2348 91 0 7 chr1 37264474 37264771 -205399582 - AluSc SINE Alu -14 295 1 729 181 90 57 chr1 37264771 37264821 -205399532 + MER58C DNA MER1_type 168 215 0 2048 141 13 0 chr1 37265601 37265907 -205398446 - AluSx SINE Alu -2 310 1 252 297 203 25 chr1 37268273 37268475 -205395878 - L2 LINE L2 -31 3241 3004 304 303 96 32 chr1 37268648 37268836 -205395517 + L2 LINE L2 2974 3173 -140 699 99 9 9 chr1 37268960 37269063 -205395290 - L1MB7 LINE L1 -15 6169 6064 2712 40 0 3 chr1 37269063 37269367 -205394986 - AluSx SINE Alu -9 303 1 1858 181 121 110 chr1 37269409 37269589 -205394764 - L1MB7 LINE L1 -743 5403 5226 2542 69 0 3 chr1 37269589 37269894 -205394459 + AluY SINE Alu 1 304 -7 1858 181 121 110 chr1 37269894 37270166 -205394187 - L1MB7 LINE L1 -920 5226 4958 2394 91 3 0 chr1 37270166 37270463 -205393890 + AluSp SINE Alu 9 306 -7 1858 181 121 110 chr1 37270463 37270633 -205393720 - L1MB7 LINE L1 -1188 4958 4791 1744 160 29 14 chr1 37270633 37270914 -205393439 + AluJb SINE Alu 21 305 -7 276 30 0 0 chr1 37270915 37270948 -205393405 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 306 0 0 0 chr1 37270947 37270981 -205393372 + (CA)n Simple_repeat Simple_repeat 2 35 0 1858 181 121 110 chr1 37270948 37271306 -205393047 - L1MB7 LINE L1 -1355 4791 4514 1965 153 0 7 chr1 37271306 37271607 -205392746 - AluSx SINE Alu -13 299 1 1858 181 121 110 chr1 37271607 37271862 -205392491 - L1MB7 LINE L1 -1632 4514 4263 275 64 0 0 chr1 37272037 37272084 -205392269 + AluSp/q SINE Alu 257 303 0 1991 199 42 58 chr1 37272100 37272558 -205391795 - L1ME1 LINE L1 -132 6034 5585 2504 59 23 0 chr1 37272558 37272862 -205391491 + AluY SINE Alu 1 311 0 1991 199 42 58 chr1 37272862 37272976 -205391377 - L1ME1 LINE L1 -581 5585 5471 2602 140 26 84 chr1 37272990 37273059 -205391294 - L1MB3 LINE L1 -2 6181 6110 2468 87 0 0 chr1 37273059 37273357 -205390996 + AluSq SINE Alu 1 298 -15 2602 140 26 84 chr1 37273357 37273458 -205390895 - L1MB3 LINE L1 -73 6110 6005 657 231 8 8 chr1 37273458 37273588 -205390765 - FLAM_A SINE Alu 0 133 4 2602 140 26 84 chr1 37273588 37274022 -205390331 - L1MB3 LINE L1 -178 6005 5611 1394 204 74 11 chr1 37274022 37274306 -205390047 - AluJo SINE Alu -8 304 3 1033 193 27 31 chr1 37274310 37274533 -205389820 - AluJo SINE Alu -6 306 85 2013 149 10 0 chr1 37274634 37274930 -205389423 + AluJo SINE Alu 8 306 -6 267 191 0 0 chr1 37275329 37275392 -205388961 + A-rich Low_complexity Low_complexity 1 63 0 200 329 195 18 chr1 37275893 37276273 -205388080 + L2 LINE L2 2531 2977 -337 1961 131 21 0 chr1 37276383 37276666 -205387687 - AluSx SINE Alu -9 303 15 241 231 77 0 chr1 37277329 37277394 -205386959 + MIR SINE MIR 39 108 -100 332 330 32 38 chr1 37277412 37277597 -205386756 + MER5A DNA MER1_type 3 186 -3 439 248 48 48 chr1 37277427 37277572 -205386781 - MER5B DNA MER1_type -3 175 31 620 319 86 52 chr1 37277592 37277999 -205386354 - L3 LINE CR1 -44 1533 1113 1697 173 38 3 chr1 37278140 37278429 -205385924 + AluJo SINE Alu 1 299 -13 2215 123 10 0 chr1 37278461 37278762 -205385591 + AluSg SINE Alu 1 304 -6 2265 109 0 0 chr1 37279014 37279308 -205385045 + AluY SINE Alu 1 294 -17 180 0 0 0 chr1 37279311 37279331 -205385022 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 306 299 150 17 chr1 37279755 37279956 -205384397 - MIR SINE MIR -13 249 16 2545 62 0 3 chr1 37280057 37280365 -205383988 + AluY SINE Alu 1 307 -4 1877 82 0 0 chr1 37280375 37280607 -205383746 + AluY SINE Alu 2 233 -78 1155 117 6 0 chr1 37280611 37280773 -205383580 + AluSg/x SINE Alu 146 308 -4 1371 142 73 4 chr1 37280773 37281033 -205383320 + L1MB7 LINE L1 5795 6072 -112 5510 175 41 10 chr1 37281033 37282071 -205382282 - HERVS71 LTR ERV1 -6507 2471 1401 478 252 0 0 chr1 37282452 37282563 -205381790 - HERVS71 LTR ERV1 -7929 1049 939 3119 88 10 42 chr1 37282663 37283010 -205381343 - MER4D LTR ERV1 -384 488 160 1546 183 35 3 chr1 37283010 37283299 -205381054 + AluJb SINE Alu 3 300 -12 3119 88 10 42 chr1 37283299 37283454 -205380899 - MER4D LTR ERV1 -712 160 2 4126 105 4 4 chr1 37283555 37284118 -205380235 - LTR6A LTR ERV1 -1 563 1 327 311 76 8 chr1 37284891 37285010 -205379343 - L2 LINE L2 -4 3268 3142 2279 111 0 0 chr1 37285199 37285497 -205378856 - AluSq SINE Alu -15 298 1 322 268 173 30 chr1 37285541 37285717 -205378636 - MIR SINE MIR -51 211 16 796 196 0 0 chr1 37285785 37285918 -205378435 + FLAM_C SINE Alu 1 133 0 2163 147 0 3 chr1 37285933 37286245 -205378108 + AluSx SINE Alu 1 311 -1 907 274 63 19 chr1 37286318 37286636 -205377717 - L2 LINE L2 -3 3310 2979 397 317 0 0 chr1 37286629 37286730 -205377623 - L2 LINE L2 -14 3299 3199 * 2207 79 68 0 chr1 37286820 37287099 -205377254 + AluSx SINE Alu 1 298 -14 1799 167 24 3 chr1 37287118 37287406 -205376947 + AluJo SINE Alu 2 295 -17 245 289 8 47 chr1 37287406 37287534 -205376819 + L1MEd LINE L1 1386 1508 -4908 1091 186 5 5 chr1 37287583 37287777 -205376576 + AluJb SINE Alu 21 214 -98 235 175 0 0 chr1 37287882 37287922 -205376431 + A-rich Low_complexity Low_complexity 3 42 0 457 286 71 86 chr1 37287965 37288008 -205376345 + L3 LINE CR1 592 634 -943 2483 64 0 3 chr1 37288008 37288303 -205376050 - AluSx SINE Alu -18 294 1 457 286 71 86 chr1 37288303 37288584 -205375769 + L3 LINE CR1 634 911 -666 330 282 179 8 chr1 37288568 37288685 -205375668 - L2 LINE L2 -9 3263 3127 * 327 222 60 43 chr1 37288725 37288842 -205375511 + L1MEd LINE L1 2000 2118 -4308 2004 131 3 33 chr1 37289167 37289472 -205374881 + AluJo SINE Alu 2 297 -15 806 182 171 6 chr1 37289529 37289705 -205374648 + MER3 DNA MER1_type 5 209 0 2249 94 3 3 chr1 37289872 37290160 -205374193 + AluSg SINE Alu 1 288 -22 904 161 0 0 chr1 37290325 37290462 -205373891 + FLAM_C SINE Alu 1 137 -6 216 323 120 30 chr1 37290467 37290576 -205373777 - MIR SINE MIR -82 126 10 1697 145 59 38 chr1 37291376 37291665 -205372688 + AluJb SINE Alu 1 295 -17 900 130 0 36 chr1 37291906 37292044 -205372309 - FLAM_C SINE Alu 0 133 1 195 252 45 12 chr1 37292496 37292583 -205371770 - MIR SINE MIR -77 131 37 236 258 97 43 chr1 37293625 37293718 -205370635 - MIR SINE MIR -162 100 3 2468 79 0 3 chr1 37294441 37294745 -205369608 + AluSq SINE Alu 1 303 -10 294 70 0 23 chr1 37294745 37294788 -205369565 - Alu SINE Alu -260 42 1 267 263 45 11 chr1 37295451 37295551 -205368802 + MIR SINE MIR 51 152 -67 217 273 0 18 chr1 37297179 37297234 -205367119 + L2 LINE L2 3217 3270 -2 190 231 231 58 chr1 37298693 37298797 -205365556 + MIR SINE MIR 20 141 -67 2160 125 0 3 chr1 37299275 37299564 -205364789 + AluSx SINE Alu 3 290 -22 2261 106 7 3 chr1 37302231 37302533 -205361820 + AluSp SINE Alu 1 303 -10 1767 129 0 4 chr1 37304103 37304351 -205360002 - AluY SINE Alu -63 248 2 339 275 124 43 chr1 37304352 37304585 -205359768 - L1ME LINE L1 -349 5772 5521 2300 82 3 17 chr1 37304590 37304884 -205359469 + AluSp SINE Alu 1 290 -23 21 57 0 0 chr1 37306175 37306210 -205358143 + AT_rich Low_complexity Low_complexity 1 35 0 337 242 39 112 chr1 37310753 37310931 -205353422 - MIR3 SINE MIR -20 188 24 450 240 37 35 chr1 37512312 37512326 -205152027 + MIR SINE MIR 25 37 -224 2165 95 24 0 chr1 37512326 37512622 -205151731 + AluSx SINE Alu 1 303 -9 450 240 37 35 chr1 37512622 37512793 -205151560 + MIR SINE MIR 37 200 -61 1181 125 0 0 chr1 37513239 37513415 -205150938 - AluSg/x SINE Alu 0 310 135 1914 111 4 14 chr1 37513445 37513724 -205150629 + AluSx SINE Alu 2 277 -35 293 111 0 0 chr1 37513724 37513769 -205150584 + Alu SINE Alu 251 295 -5 2216 113 0 0 chr1 37514017 37514319 -205150034 + AluSg SINE Alu 1 302 -8 270 263 0 12 chr1 37514657 37514737 -205149616 - MER112 DNA MER1_type -99 161 83 274 244 12 12 chr1 37514767 37514849 -205149504 - MER112 DNA MER1_type -178 82 1 1593 172 28 10 chr1 37514918 37515209 -205149144 + AluJo SINE Alu 1 296 -16 397 244 228 22 chr1 37516106 37516286 -205148067 + MIR SINE MIR 46 262 0 32 26 0 0 chr1 37516309 37516348 -205148005 + AT_rich Low_complexity Low_complexity 1 39 0 1416 171 47 8 chr1 37516512 37516770 -205147583 - AluJo SINE Alu -44 268 1 312 191 0 0 chr1 37516941 37517004 -205147349 - MARNA DNA Mariner -44 542 480 22 35 0 0 chr1 37517153 37517182 -205147171 + AT_rich Low_complexity Low_complexity 1 29 0 734 243 44 85 chr1 37517641 37517814 -205146539 + MIR SINE MIR 2 162 -100 1558 129 15 117 chr1 37517814 37518139 -205146214 - AluJo SINE Alu -6 296 5 734 243 44 85 chr1 37518139 37518237 -205146116 + MIR SINE MIR 162 262 0 1530 171 14 38 chr1 37518912 37519205 -205145148 + AluJo SINE Alu 1 286 -26 381 226 0 0 chr1 37519207 37519353 -205145000 + (TA)n Simple_repeat Simple_repeat 1 146 0 315 273 181 51 chr1 37520305 37520521 -205143832 - MIR SINE MIR -8 254 11 299 313 125 9 chr1 37520929 37521041 -205143312 - L2 LINE L2 -5 3267 3143 392 343 34 14 chr1 37521279 37521425 -205142928 + L2 LINE L2 3165 3313 0 210 239 224 0 chr1 37521848 37521915 -205142438 + L3b LINE CR1 1361 1442 -141 245 286 29 0 chr1 37523133 37523203 -205141150 + MLT1L LTR MaLR 202 273 -342 939 302 121 29 chr1 37523492 37524130 -205140223 + L2 LINE L2 2594 3269 -3 449 314 5 78 chr1 37524151 37524355 -205139998 - MIR SINE MIR -54 208 20 798 231 44 35 chr1 37525161 37525390 -205138963 + MIR SINE MIR 28 258 -4 194 298 0 0 chr1 37525407 37525454 -205138899 + MIR SINE MIR 71 117 -91 981 229 121 39 chr1 37526559 37526922 -205137431 + L2 LINE L2 2921 3313 0 633 305 27 5 chr1 37527707 37527894 -205136459 + MIR SINE MIR 32 222 -40 425 309 29 0 chr1 37528310 37528446 -205135907 + MIR SINE MIR 68 207 -55 194 235 272 49 chr1 37529202 37529283 -205135070 + L2 LINE L2 3155 3253 -19 423 313 31 47 chr1 37529389 37529581 -205134772 + L3 LINE CR1 1375 1563 -14 863 219 55 5 chr1 37529596 37529797 -205134556 - MIR SINE MIR -19 243 33 1864 115 3 17 chr1 37529835 37530186 -205134167 - AluSc SINE Alu 0 347 1 1938 121 13 3 chr1 37530528 37530826 -205133527 - AluJb SINE Alu -4 308 8 198 118 0 0 chr1 37531309 37531343 -205133010 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 227 337 48 0 chr1 37532602 37532685 -205131668 - L3b LINE CR1 -205 1378 1292 2081 102 0 3 chr1 37532687 37532992 -205131361 + AluSx SINE Alu 1 304 0 240 323 16 55 chr1 37533760 37533887 -205130466 + L2 LINE L2 2554 2675 -639 1021 283 170 41 chr1 37533911 37534515 -205129838 - L2 LINE L2 0 3313 2633 295 336 78 102 chr1 37534524 37534857 -205129496 + L2 LINE L2 2948 3272 0 182 91 30 0 chr1 37535710 37535743 -205128610 + (CA)n Simple_repeat Simple_repeat 1 34 0 410 321 12 6 chr1 37535774 37535939 -205128414 + (CATA)n Simple_repeat Simple_repeat 4 169 0 637 346 31 0 chr1 37536913 37537167 -205127186 + L2 LINE L2 2235 2496 -818 446 209 28 14 chr1 37537191 37537302 -205127051 + L1ME3A LINE L1 6035 6148 -16 29 47 0 0 chr1 37537334 37537377 -205126976 + AT_rich Low_complexity Low_complexity 1 43 0 1811 168 10 7 chr1 37538491 37538801 -205125552 + AluJb SINE Alu 1 311 -1 807 176 20 0 chr1 37538850 37539003 -205125350 - FAM SINE Alu -6 43 1 414 246 113 66 chr1 37539072 37539115 -205125238 + L1MEc LINE L1 1771 1810 -4405 1709 165 10 13 chr1 37539115 37539418 -205124935 + AluJb SINE Alu 1 302 -10 414 246 113 66 chr1 37539418 37539731 -205124622 + L1MEc LINE L1 1810 2109 -4106 10808 31 0 0 chr1 37539918 37542014 -205122339 + L1PA3 LINE L1 4095 6195 0 3085 35 3 11 chr1 37542016 37542391 -205121962 + L1PA5 LINE L1 5778 6149 -5 420 180 40 0 chr1 37542399 37542499 -205121854 + L1MEc LINE L1 2198 2301 -4095 1415 195 45 0 chr1 37542512 37542688 -205121665 - AluSx SINE Alu 0 312 117 184 0 62 31 chr1 37542688 37542720 -205121633 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1415 195 45 0 chr1 37542720 37542830 -205121523 - AluSx SINE Alu -195 117 13 2145 282 73 46 chr1 37542960 37543322 -205121031 - L1MEc LINE L1 -4973 1423 1072 1997 121 3 0 chr1 37543322 37543628 -205120725 - AluSx SINE Alu 0 307 1 2145 282 73 46 chr1 37543628 37544018 -205120335 - L1MEc LINE L1 -5324 1072 694 1839 159 0 13 chr1 37544018 37544326 -205120027 - AluSx SINE Alu -8 304 1 2145 282 73 46 chr1 37544326 37544922 -205119431 - L1MEc LINE L1 -5702 694 36 2045 110 0 13 chr1 37544954 37545262 -205119091 + AluSg SINE Alu 1 304 -6 781 250 127 8 chr1 37545281 37545541 -205118812 + L1M4 LINE L1 4803 5093 -1053 1154 65 7 7 chr1 37545580 37545733 -205118620 - AluSp SINE Alu -159 154 2 550 265 53 30 chr1 37545734 37545998 -205118355 + L1M4 LINE L1 5079 5348 -798 25 0 0 0 chr1 37547353 37547378 -205116975 + GC_rich Low_complexity Low_complexity 1 25 0 273 57 0 0 chr1 37547419 37547454 -205116899 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 221 56 0 28 chr1 37547469 37547505 -205116848 + (CGGGGG)n Simple_repeat Simple_repeat 6 40 0 22 0 0 0 chr1 37547685 37547707 -205116646 + GC_rich Low_complexity Low_complexity 1 22 0 217 216 0 0 chr1 37547818 37547869 -205116484 + C-rich Low_complexity Low_complexity 1 51 0 568 312 62 46 chr1 37548442 37548830 -205115523 + L2 LINE L2 2364 2757 -557 2024 79 75 0 chr1 37550142 37550422 -205113931 + AluY SINE Alu 1 301 -10 333 329 30 65 chr1 37550422 37550680 -205113673 + MIR SINE MIR 4 256 -6 486 221 6 23 chr1 37550750 37550902 -205113451 + MIR SINE MIR 49 262 0 3188 239 101 54 chr1 37551027 37552278 -205112075 + L2 LINE L2 1882 3169 -144 229 312 57 0 chr1 37552381 37552522 -205111831 - L1MEc LINE L1 -3815 2400 2252 435 301 49 39 chr1 37552620 37552823 -205111530 - L1MEc LINE L1 -4159 2237 2033 288 0 0 0 chr1 37552892 37552924 -205111429 + (TG)n Simple_repeat Simple_repeat 1 32 0 1890 125 0 7 chr1 37552924 37553205 -205111148 - AluSx SINE Alu -33 279 1 461 143 29 0 chr1 37553255 37553325 -205111028 - MLT1B LTR MaLR -55 335 264 713 240 23 0 chr1 37553331 37553552 -205110801 - L1M4 LINE L1 -933 5711 5486 308 288 64 8 chr1 37553967 37554092 -205110261 - L1M4 LINE L1 -6333 209 78 359 233 23 0 chr1 37554180 37554266 -205110087 - MLT1J1 LTR MaLR -4 442 355 2091 215 51 78 chr1 37554277 37554826 -205109527 - MLT1F1 LTR MaLR -8 559 1 1554 280 60 62 chr1 37554833 37555498 -205108855 - L1MEc LINE L1 -5430 775 112 210 143 39 26 chr1 37555999 37556076 -205108277 + G-rich Low_complexity Low_complexity 1 78 0 2171 98 0 0 chr1 37557943 37558230 -205106123 + AluSx SINE Alu 1 287 -25 329 330 25 0 chr1 37558247 37558365 -205105988 + L1MC5 LINE L1 7805 7925 -36 659 253 118 13 chr1 37558370 37558837 -205105516 - L1M4 LINE L1 -1455 4691 4176 339 276 29 35 chr1 37558839 37559013 -205105340 + L1M4 LINE L1 2446 2618 -3528 2155 204 55 44 chr1 37559088 37559338 -205105015 - MLT1F LTR MaLR 0 514 268 3018 122 16 46 chr1 37559338 37559839 -205104514 - MER66B LTR ERV1 0 486 1 2155 204 55 44 chr1 37559839 37560120 -205104233 - MLT1F LTR MaLR -246 268 1 780 254 88 18 chr1 37560120 37560459 -205103894 + L1M4 LINE L1 2699 3061 -3085 659 277 72 49 chr1 37560530 37560762 -205103591 + L1M4 LINE L1 2979 3204 -2942 821 169 0 22 chr1 37560762 37560898 -205103455 - FLAM_C SINE Alu 0 133 1 2203 122 0 3 chr1 37560901 37561205 -205103148 - AluSx SINE Alu -9 303 1 659 277 72 49 chr1 37561205 37561437 -205102916 + L1M4 LINE L1 3205 3458 -2688 1952 134 137 31 chr1 37561458 37561845 -205102508 + MSTA LTR MaLR 1 428 0 216 0 0 0 chr1 37562077 37562101 -205102252 + (A)n Simple_repeat Simple_repeat 1 24 0 209 375 17 17 chr1 37562285 37562405 -205101948 - MIR SINE MIR -123 139 20 180 77 0 0 chr1 37563103 37563129 -205101224 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7341 59 4 32 chr1 37563129 37564361 -205099992 - SVA Other Other -799 1363 323 25 65 0 0 chr1 37564370 37564416 -205099937 + AT_rich Low_complexity Low_complexity 1 46 0 1576 146 96 21 chr1 37564443 37564724 -205099629 - AluJb SINE Alu -10 302 1 401 276 33 33 chr1 37564733 37565009 -205099344 - L1MEc LINE L1 -4967 1649 1181 2004 101 17 47 chr1 37565047 37565345 -205099008 + AluSx SINE Alu 1 289 -23 486 0 0 0 chr1 37565346 37565400 -205098953 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 2525 210 40 39 chr1 37565764 37565992 -205098361 + Zaphod DNA AcHobo 2695 2921 -1110 2215 153 60 14 chr1 37565992 37566405 -205097948 + MSTB1 LTR MaLR 1 432 0 2525 210 40 39 chr1 37566405 37566924 -205097429 + Zaphod DNA AcHobo 2921 3443 -588 1074 194 9 18 chr1 37566908 37567130 -205097223 + Zaphod DNA AcHobo 3785 4004 -27 * 598 248 175 43 chr1 37568960 37569023 -205095330 + L1MC4 LINE L1 5482 5535 -586 2095 109 22 29 chr1 37569023 37569334 -205095019 - AluSg1 SINE Alu 0 309 1 598 248 175 43 chr1 37569334 37569638 -205094715 + L1MC4 LINE L1 5535 5775 -346 1329 125 82 0 chr1 37569767 37569975 -205094378 - AluJb SINE Alu -4 308 84 297 282 0 0 chr1 37570692 37570763 -205093590 - L2 LINE L2 -23 3249 3179 303 28 0 0 chr1 37570964 37571000 -205093353 + (TG)n Simple_repeat Simple_repeat 2 37 0 339 265 166 11 chr1 37571087 37571268 -205093085 - L2 LINE L2 -343 2971 2763 229 355 21 0 chr1 37572654 37572747 -205091606 - L2 LINE L2 -821 2493 2399 1033 95 68 16 chr1 37572959 37573149 -205091204 + Tigger7 DNA MER2_type 2308 2507 -80 272 253 35 0 chr1 37573150 37573237 -205091116 + (TA)n Simple_repeat Simple_repeat 1 90 0 207 100 0 0 chr1 37573299 37573329 -205091024 + (TA)n Simple_repeat Simple_repeat 1 30 0 239 197 0 30 chr1 37573366 37573432 -205090921 + L1MC4 LINE L1 6640 6703 -1339 601 179 24 6 chr1 37573447 37573615 -205090738 + (TA)n Simple_repeat Simple_repeat 1 171 0 590 197 0 41 chr1 37573615 37573737 -205090616 + Tigger7 DNA MER2_type 2471 2587 0 245 98 24 0 chr1 37573806 37573847 -205090506 + MADE1 DNA Mariner 35 76 -4 22 0 0 0 chr1 37573899 37573921 -205090432 + AT_rich Low_complexity Low_complexity 1 22 0 1083 288 105 16 chr1 37573921 37574452 -205089901 + L2 LINE L2 2741 3309 -4 2434 78 0 7 chr1 37574566 37574862 -205089491 + AluY SINE Alu 1 294 -17 768 147 0 98 chr1 37574887 37575050 -205089303 + MLT1E2 LTR MaLR 1 147 -479 360 239 126 52 chr1 37575051 37575140 -205089213 - L1M4 LINE L1 -982 5164 5083 2418 97 0 3 chr1 37575140 37575450 -205088903 + AluSg SINE Alu 1 309 -1 360 239 126 52 chr1 37575450 37575590 -205088763 - L1M4 LINE L1 -1063 5083 4918 458 198 11 33 chr1 37575642 37575886 -205088467 + (TA)n Simple_repeat Simple_repeat 1 238 0 24 32 0 0 chr1 37575889 37575920 -205088433 + AT_rich Low_complexity Low_complexity 1 31 0 263 167 0 0 chr1 37576214 37576256 -205088097 - MIR SINE MIR 0 262 221 499 178 50 20 chr1 37576352 37576453 -205087900 + MLT1L LTR MaLR 132 235 -380 3005 6 0 0 chr1 37576471 37576788 -205087565 - AluYb8 SINE Alu -1 317 1 548 274 121 21 chr1 37576846 37577036 -205087317 + MLT1L LTR MaLR 349 557 -58 804 246 169 38 chr1 37577726 37578153 -205086200 + L1ME4a LINE L1 5582 6064 -57 813 192 0 0 chr1 37578539 37578669 -205085684 + MER45A DNA AcHobo 1 130 -48 2431 83 0 13 chr1 37578721 37579034 -205085319 + AluY SINE Alu 1 309 -2 30 27 0 0 chr1 37579169 37579206 -205085147 + AT_rich Low_complexity Low_complexity 1 37 0 1480 194 32 157 chr1 37579370 37580001 -205084352 + MLT1H LTR MaLR 1 542 0 612 308 92 61 chr1 37580057 37580502 -205083851 + L1MEd LINE L1 267 725 -5394 2565 161 17 14 chr1 37580524 37580946 -205083407 + MLT2B2 LTR ERVL 1 423 -92 777 168 19 71 chr1 37581191 37581346 -205083007 - AluSg/x SINE Alu -31 279 133 2264 99 3 23 chr1 37581400 37581704 -205082649 - AluSg SINE Alu -12 298 1 22 35 0 0 chr1 37582118 37582147 -205082206 + AT_rich Low_complexity Low_complexity 1 29 0 1921 163 0 7 chr1 37582698 37582992 -205081361 + AluSx SINE Alu 1 292 -20 806 169 0 0 chr1 37583358 37583488 -205080865 - FLAM_A SINE Alu 0 133 4 2325 79 14 0 chr1 37583937 37584228 -205080125 - AluSq SINE Alu -18 295 1 269 298 149 0 chr1 37584257 37584398 -205079955 - MIR SINE MIR -81 181 20 768 158 0 43 chr1 37585214 37585353 -205079000 - FLAM_C SINE Alu 0 133 1 2205 78 21 0 chr1 37585684 37585967 -205078386 + AluSg SINE Alu 1 289 -21 552 214 36 71 chr1 37585967 37586135 -205078218 - MSTD LTR MaLR -234 162 1 321 240 69 17 chr1 37586135 37586280 -205078073 - L1MEc LINE L1 -5028 1505 1202 725 167 8 0 chr1 37586309 37586429 -205077924 + AluJb SINE Alu 6 126 -186 686 98 0 0 chr1 37586436 37586528 -205077825 + L1PA14 LINE L1 6035 6126 -35 1906 114 54 17 chr1 37586768 37587065 -205077288 - AluSg SINE Alu -2 308 1 260 322 16 16 chr1 37587179 37587300 -205077053 - MER5A DNA MER1_type -68 121 1 1810 147 6 35 chr1 37588206 37588520 -205075833 - AluJo SINE Alu -7 305 1 25 31 0 0 chr1 37589723 37589755 -205074598 + AT_rich Low_complexity Low_complexity 1 32 0 1175 215 5 9 chr1 37590275 37590494 -205073859 - MER58A DNA MER1_type -6 218 1 529 248 150 67 chr1 37590707 37590875 -205073478 - L1ME2 LINE L1 -294 5870 5717 1958 148 20 3 chr1 37590875 37591173 -205073180 + AluJo SINE Alu 6 308 -4 1781 142 25 25 chr1 37591180 37591482 -205072871 + AluJb SINE Alu 1 302 0 529 248 150 67 chr1 37591482 37591873 -205072480 - L1ME2 LINE L1 -452 5712 5256 1138 251 362 18 chr1 37591876 37592303 -205072050 + L2 LINE L2 1639 1918 -1396 1428 181 75 4 chr1 37592303 37592568 -205071785 - AluJo SINE Alu -28 284 1 1138 251 362 18 chr1 37592568 37592968 -205071385 + L2 LINE L2 1918 2751 -563 333 197 128 34 chr1 37593024 37593141 -205071212 + L1M4 LINE L1 4735 4862 -1284 2021 115 3 39 chr1 37595814 37596119 -205068234 + AluSx SINE Alu 1 294 -18 1757 159 0 10 chr1 37596171 37596461 -205067892 - AluJb SINE Alu -2 310 24 412 315 50 57 chr1 37596889 37597535 -205066818 + Charlie3 DNA MER1_type 1355 2017 -693 25 65 0 0 chr1 37598152 37598198 -205066155 + AT_rich Low_complexity Low_complexity 1 46 0 2120 110 14 10 chr1 37598399 37598689 -205065664 - AluSq SINE Alu -22 291 1 1303 171 89 52 chr1 37598783 37599110 -205065243 - MER58B DNA MER1_type 0 341 3 220 172 52 17 chr1 37599326 37599384 -205064969 - L2 LINE L2 0 3272 3213 226 248 78 0 chr1 37599409 37599515 -205064838 - MIR SINE MIR -70 138 40 776 264 72 103 chr1 37601630 37601852 -205062501 - L1MEd LINE L1 -2632 3497 3270 1682 100 166 8 chr1 37601852 37602111 -205062242 - AluSg1 SINE Alu -9 300 1 776 264 72 103 chr1 37602111 37602209 -205062144 - L1MEd LINE L1 -2859 3270 3170 1523 196 16 35 chr1 37602209 37602520 -205061833 + AluJo SINE Alu 1 305 -7 776 264 72 103 chr1 37602520 37603000 -205061353 - L1MEd LINE L1 -2959 3170 2721 3010 101 90 62 chr1 37603022 37603466 -205060887 + MER1A DNA MER1_type 1 462 -2238 2480 57 7 7 chr1 37603466 37603767 -205060586 - AluY SINE Alu -6 305 5 3010 101 90 62 chr1 37603767 37603835 -205060518 + MER1A DNA MER1_type 462 527 0 701 283 68 11 chr1 37603861 37604228 -205060125 - L1MEd LINE L1 -3526 2603 2216 2100 123 7 7 chr1 37604228 37604537 -205059816 - AluSx SINE Alu -3 309 1 408 322 110 47 chr1 37605121 37605631 -205058722 - L1MEd LINE L1 -5560 559 18 677 320 41 68 chr1 37606412 37606781 -205057572 - L2 LINE L2 0 3272 2914 671 165 74 34 chr1 37607060 37607236 -205057117 + MER53 DNA DNA 7 189 0 2135 228 20 24 chr1 37608193 37608698 -205055655 - MLT1J LTR MaLR -6 505 3 351 0 0 0 chr1 37608707 37608746 -205055607 + (CCAA)n Simple_repeat Simple_repeat 4 42 0 376 198 146 0 chr1 37609020 37609116 -205055237 - MIR SINE MIR -39 223 114 406 317 56 7 chr1 37609383 37609525 -205054828 + MIR SINE MIR 104 252 -10 1491 187 142 58 chr1 37609597 37610063 -205054290 - MLT1D LTR MaLR 0 505 1 312 323 153 30 chr1 37610113 37610550 -205053803 + L2 LINE L2 1728 2218 -1096 278 337 163 0 chr1 37611209 37611485 -205052868 - L2 LINE L2 -337 2977 2657 299 267 20 0 chr1 37611546 37611647 -205052706 + (TA)n Simple_repeat Simple_repeat 2 104 0 195 228 185 54 chr1 37611652 37611744 -205052609 - MIR SINE MIR -88 120 17 246 243 14 14 chr1 37612609 37612683 -205051670 + MIR SINE MIR 13 86 -176 2343 61 54 7 chr1 37612783 37613078 -205051275 + AluSp SINE Alu 1 309 -4 180 125 0 0 chr1 37613734 37613766 -205050587 + (CCCCCG)n Simple_repeat Simple_repeat 3 34 0 203 189 19 19 chr1 37616457 37616510 -205047843 + (CCCGG)n Simple_repeat Simple_repeat 5 57 0 30 69 0 0 chr1 37616555 37616613 -205047740 + GC_rich Low_complexity Low_complexity 1 58 0 186 358 12 12 chr1 37617779 37617860 -205046493 - MIR SINE MIR -71 137 57 241 245 29 78 chr1 37618193 37618295 -205046058 - L2 LINE L2 -260 3012 2916 222 171 0 0 chr1 37618370 37618411 -205045942 - L2 LINE L2 -557 2757 2717 236 262 155 0 chr1 37618545 37618648 -205045705 + MER5A DNA MER1_type 65 183 -6 184 271 34 0 chr1 37618694 37618753 -205045600 + MIR3 SINE MIR 100 160 -48 407 297 31 8 chr1 37618758 37618886 -205045467 - MIR SINE MIR -81 181 51 1229 209 234 0 chr1 37619152 37619473 -205044880 - MSTD LTR MaLR 0 396 1 270 289 24 0 chr1 37619772 37619855 -205044498 - L2 LINE L2 -639 2675 2591 563 274 135 13 chr1 37620033 37620263 -205044090 - MIR SINE MIR -3 259 2 318 342 55 42 chr1 37620271 37620508 -205043845 + L2 LINE L2 2992 3231 -41 1699 176 140 80 chr1 37620615 37621188 -205043165 + LTR48B LTR ERV1 1 607 -37 2224 118 7 3 chr1 37621386 37621683 -205042670 + AluJb SINE Alu 1 298 -14 2254 92 27 0 chr1 37621685 37621979 -205042374 + AluSp SINE Alu 1 302 -11 490 241 92 23 chr1 37622269 37622443 -205041910 - MIR SINE MIR 0 262 77 289 288 43 58 chr1 37623577 37623716 -205040637 - L2 LINE L2 0 3272 3136 196 298 18 0 chr1 37623724 37623781 -205040572 + L2 LINE L2 3215 3272 0 478 254 74 60 chr1 37624190 37624407 -205039946 + MIR SINE MIR 20 239 -23 24 0 0 0 chr1 37624428 37624452 -205039901 + AT_rich Low_complexity Low_complexity 1 24 0 2157 115 0 29 chr1 37624470 37624817 -205039536 + MER1B DNA MER1_type 1 337 0 399 239 28 46 chr1 37625033 37625142 -205039211 + MIR SINE MIR 155 261 -1 240 35 0 0 chr1 37625289 37625318 -205039035 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1124 105 0 0 chr1 37625449 37625592 -205038761 - AluSg/x SINE Alu -14 298 156 276 83 0 0 chr1 37625592 37625628 -205038725 - Alu SINE Alu -258 45 10 2126 83 72 7 chr1 37626199 37626475 -205037878 + AluSg1 SINE Alu 1 294 -15 258 285 169 55 chr1 37627769 37627983 -205036370 - L1ME4a LINE L1 -13 6108 5920 1605 148 16 4 chr1 37627983 37628226 -205036127 - AluJb SINE Alu -23 289 44 2197 122 0 7 chr1 37628230 37628534 -205035819 - AluSx SINE Alu -9 303 2 2299 103 0 0 chr1 37628543 37628856 -205035497 - AluSg SINE Alu 0 310 1 258 285 169 55 chr1 37628856 37629134 -205035219 - L1ME4a LINE L1 -210 5911 5543 240 213 191 32 chr1 37629759 37629853 -205034500 - Charlie8 DNA MER1_type -2173 244 136 297 310 99 35 chr1 37629892 37630034 -205034319 - Charlie8 DNA MER1_type -2265 152 2 198 0 0 0 chr1 37630073 37630095 -205034258 + (T)n Simple_repeat Simple_repeat 1 22 0 631 255 93 10 chr1 37631139 37631343 -205033010 + MIR SINE MIR 2 222 -40 225 175 191 0 chr1 37631363 37631426 -205032927 - MIR SINE MIR -34 228 154 230 214 71 0 chr1 37631805 37631861 -205032492 + MIR SINE MIR 87 146 -62 2662 61 0 6 chr1 37632545 37632858 -205031495 - AluY SINE Alu 0 311 1 308 292 110 67 chr1 37633016 37633362 -205030991 + L2 LINE L2 2007 2367 -947 * 447 270 123 6 chr1 37633333 37633496 -205030857 + MIR SINE MIR 47 228 -34 338 276 163 0 chr1 37634094 37634217 -205030136 + L2 LINE L2 3129 3271 -1 632 248 124 5 chr1 37635594 37635812 -205028541 + MIR SINE MIR 18 261 -1 1808 171 26 36 chr1 37636280 37636666 -205027687 - MLT1B LTR MaLR 0 390 9 446 319 74 0 chr1 37637733 37637896 -205026457 - MIR SINE MIR -67 195 21 330 236 150 8 chr1 37638462 37638589 -205025764 + MIR SINE MIR 39 183 -79 431 310 150 18 chr1 37638823 37639097 -205025256 + L3b LINE CR1 1179 1488 -95 370 363 58 22 chr1 37639760 37639986 -205024367 + MIR SINE MIR 23 256 -6 558 292 49 5 chr1 37640402 37640587 -205023766 + MIR SINE MIR 11 203 -59 649 179 259 0 chr1 37640758 37640920 -205023433 - MER3 DNA MER1_type -5 204 1 198 302 52 52 chr1 37642144 37642260 -205022093 - MIR SINE MIR -63 145 30 701 118 8 0 chr1 37643184 37643303 -205021050 + (TTCTC)n Simple_repeat Simple_repeat 3 122 0 * 848 125 25 0 chr1 37643277 37643437 -205020916 + CT-rich Low_complexity Low_complexity 1 164 0 2194 105 20 3 chr1 37643438 37643733 -205020620 - AluSg SINE Alu -10 300 1 2331 96 3 0 chr1 37645093 37645386 -205018967 - AluSx SINE Alu -18 294 1 233 330 34 0 chr1 37645473 37645561 -205018792 - L3 LINE CR1 -48 1529 1439 201 288 12 12 chr1 37645641 37645721 -205018632 + L3 LINE CR1 836 915 -662 2178 94 0 4 chr1 37645738 37646013 -205018340 + AluSx SINE Alu 21 294 -18 218 250 40 30 chr1 37646860 37646960 -205017393 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 318 295 40 101 chr1 37646983 37647218 -205017135 + L2 LINE L2 2962 3179 -93 1748 178 0 3 chr1 37647218 37647504 -205016849 - AluJo SINE Alu -7 305 21 318 295 40 101 chr1 37647504 37647546 -205016807 + L2 LINE L2 3179 3222 -50 1022 247 63 0 chr1 37647613 37647852 -205016501 + MIR SINE MIR 5 258 -4 2283 117 7 0 chr1 37648032 37648341 -205016012 + AluSx SINE Alu 1 311 -1 1017 175 0 0 chr1 37648357 37648523 -205015830 + FRAM SINE Alu 1 166 0 1883 172 78 47 chr1 37648661 37648962 -205015391 - MLT1D LTR MaLR 0 505 182 2106 136 14 0 chr1 37648962 37649257 -205015096 - AluJb SINE Alu -13 299 1 1883 172 78 47 chr1 37649257 37649444 -205014909 - MLT1D LTR MaLR -323 182 2 423 299 16 90 chr1 37649727 37649971 -205014382 - L2 LINE L2 -93 3179 2954 266 104 0 21 chr1 37650020 37650068 -205014285 + (TG)n Simple_repeat Simple_repeat 1 47 0 203 160 40 20 chr1 37650076 37650126 -205014227 + L2 LINE L2 3217 3267 -5 366 227 49 11 chr1 37650394 37650509 -205013844 - MIR SINE MIR -67 141 23 222 171 24 0 chr1 37650877 37650918 -205013435 + MIR3 SINE MIR 119 160 -48 379 227 127 27 chr1 37650977 37651127 -205013226 - MER103 DNA DNA 0 166 2 1236 128 55 48 chr1 37651244 37651423 -205012930 - LTR45B LTR ERV1 -80 409 233 2399 85 0 0 chr1 37651423 37651716 -205012637 - AluY SINE Alu -18 293 1 1236 128 55 48 chr1 37651716 37651878 -205012475 - LTR45B LTR ERV1 -256 233 24 2214 91 52 0 chr1 37651878 37652165 -205012188 + AluSx SINE Alu 1 302 -10 250 288 206 12 chr1 37652642 37652802 -205011551 + L3 LINE CR1 1280 1470 -107 1250 291 74 12 chr1 37652924 37653329 -205011024 - MLT1H LTR MaLR -107 442 13 362 302 14 36 chr1 37653516 37653655 -205010698 - MIR SINE MIR -48 214 79 548 284 85 28 chr1 37653981 37654157 -205010196 - L2 LINE L2 -6 3307 3122 290 304 43 9 chr1 37654590 37654705 -205009648 + MER117 DNA MER1_type 55 173 -24 873 217 11 0 chr1 37654748 37654923 -205009430 - MER97b DNA MER1_type? -876 177 1 769 198 95 162 chr1 37655614 37656139 -205008214 + LTR16C LTR ERVL 2 491 0 495 307 23 46 chr1 37656305 37656523 -205007830 + MIR SINE MIR 15 227 -35 571 287 97 15 chr1 37657514 37657709 -205006644 + MIR SINE MIR 52 262 0 468 209 64 9 chr1 37657972 37658082 -205006271 - MIR SINE MIR -30 232 117 226 416 8 0 chr1 37658106 37658231 -205006122 - MIR3 SINE MIR -80 128 3 888 267 124 50 chr1 37658475 37658894 -205005459 - MLT1J2 LTR MaLR 0 450 1 306 191 48 129 chr1 37658913 37659060 -205005293 - MIR SINE MIR -4 258 124 681 180 22 0 chr1 37659060 37659199 -205005154 - L1ME1 LINE L1 -188 6047 5906 * 6810 219 99 70 chr1 37659196 37660588 -205003765 - L1ME1 LINE L1 -669 5564 4214 948 168 0 19 chr1 37660588 37660749 -205003604 - AluSg/x SINE Alu -19 290 133 6810 219 99 70 chr1 37660749 37661285 -205003068 - L1ME1 LINE L1 -2019 4214 3695 1731 203 7 0 chr1 37661285 37661580 -205002773 - AluJb SINE Alu -3 309 13 6810 219 99 70 chr1 37661580 37662681 -205001672 - L1ME1 LINE L1 -2538 3695 2120 5224 186 50 37 chr1 37662677 37663482 -205000871 - L1MD1 LINE L1 0 6636 5843 * 2130 115 0 14 chr1 37663482 37663812 -205000541 - AluSx SINE Alu 0 326 1 5224 186 50 37 chr1 37663812 37663969 -205000384 - L1MD1 LINE L1 -793 5843 5689 985 182 6 0 chr1 37663969 37664128 -205000225 - FRAM SINE Alu -6 160 1 5224 186 50 37 chr1 37664128 37664429 -204999924 - L1MD1 LINE L1 -947 5689 5393 243 0 0 0 chr1 37664429 37664456 -204999897 + (TTA)n Simple_repeat Simple_repeat 2 28 0 5224 186 50 37 chr1 37664456 37664920 -204999433 - L1MD1 LINE L1 -1243 5393 4855 2187 123 0 0 chr1 37664920 37665221 -204999132 - AluSx SINE Alu -2 310 10 5224 186 50 37 chr1 37665221 37665375 -204998978 - L1MD1 LINE L1 -1781 4855 4704 302 205 24 12 chr1 37665361 37665444 -204998909 - L1P LINE L1 -1906 4240 4157 * 1447 157 25 138 chr1 37665440 37665874 -204998479 - L1MD1 LINE L1 -6009 531 147 4469 248 60 45 chr1 37665893 37666169 -204998184 - L1ME1 LINE L1 -4264 2132 1862 1773 183 30 0 chr1 37666169 37666469 -204997884 - AluJo SINE Alu -3 309 1 4469 248 60 45 chr1 37666469 37666691 -204997662 - L1ME1 LINE L1 -4534 1862 1645 1732 176 28 14 chr1 37666691 37667048 -204997305 - L1MB7 LINE L1 -5 6179 5818 4469 248 60 45 chr1 37667048 37667495 -204996858 - L1ME1 LINE L1 -4751 1645 1206 2566 54 0 0 chr1 37667495 37667791 -204996562 - AluY SINE Alu -9 302 7 4469 248 60 45 chr1 37667791 37668864 -204995489 - L1ME1 LINE L1 -5190 1206 81 283 220 87 116 chr1 37669087 37669260 -204995093 - MLT1H LTR MaLR -23 526 359 251 293 65 46 chr1 37669238 37669551 -204994802 - MLT1I LTR MaLR -110 299 1 * 2248 106 0 0 chr1 37669560 37669876 -204994477 - AluSx SINE Alu 0 316 1 727 281 147 92 chr1 37669907 37670206 -204994147 - L1MEd LINE L1 -5321 798 517 2187 118 3 31 chr1 37670206 37670527 -204993826 + AluSx SINE Alu 1 312 0 727 281 147 92 chr1 37670527 37670773 -204993580 - L1MEd LINE L1 -5602 517 204 2119 128 7 3 chr1 37670773 37671063 -204993290 + AluSx SINE Alu 1 291 -21 727 281 147 92 chr1 37671063 37671210 -204993143 - L1MEd LINE L1 -5915 204 67 3971 89 19 2 chr1 37671213 37671755 -204992598 - L1PA11 LINE L1 0 6174 5624 600 275 8 0 chr1 37671997 37672128 -204992225 + L2 LINE L2 3137 3268 -4 222 222 19 0 chr1 37672241 37672295 -204992058 + L3 LINE CR1 619 673 -904 366 291 24 16 chr1 37672329 37672456 -204991897 - LTR67 LTR ERVL -2 555 428 1281 189 45 126 chr1 37672483 37672880 -204991473 + MLT1A1 LTR MaLR 1 365 0 6235 190 20 64 chr1 37672880 37673145 -204991208 + MLT1A1-int LTR MaLR 1 276 -1459 1808 185 0 0 chr1 37673145 37673443 -204990910 + AluJo SINE Alu 2 299 -13 6235 190 20 64 chr1 37673443 37674597 -204989756 + MLT1A1-int LTR MaLR 276 1357 -378 991 113 0 0 chr1 37674597 37674730 -204989623 - AluSg SINE Alu -7 303 171 1281 128 0 0 chr1 37674871 37675035 -204989318 - AluSg SINE Alu -146 164 1 1817 142 77 3 chr1 37675035 37675346 -204989007 + MLT1A1-int LTR MaLR 1351 1684 -51 357 96 0 0 chr1 37675351 37675403 -204988950 + MADE1 DNA Mariner 1 52 -28 299 106 21 0 chr1 37675403 37675450 -204988903 + MLT1A1-int LTR MaLR 1688 1735 0 1224 156 45 159 chr1 37675450 37675872 -204988481 + MLT1A2 LTR MaLR 1 374 0 2247 112 0 0 chr1 37676792 37677079 -204987274 - AluSx SINE Alu -25 287 1 366 364 24 34 chr1 37677886 37678095 -204986258 + L3 LINE CR1 718 924 -653 1883 218 107 52 chr1 37678467 37679221 -204985132 - HAL1 LINE L1 -909 1598 803 1352 121 5 15 chr1 37679225 37679431 -204984922 + L1MC1 LINE L1 6113 6316 -17 607 304 15 0 chr1 37679545 37679746 -204984607 - HAL1 LINE L1 -1696 811 608 1864 141 3 7 chr1 37679808 37680092 -204984261 + AluJo SINE Alu 2 284 -28 672 48 0 0 chr1 37680092 37680176 -204984177 + (CCGAA)n Simple_repeat Simple_repeat 4 87 0 302 288 141 60 chr1 37680181 37680365 -204983988 + L1ME4a LINE L1 4735 4933 -1213 21 0 0 0 chr1 37680478 37680499 -204983854 + AT_rich Low_complexity Low_complexity 1 21 0 394 316 140 16 chr1 37680573 37680766 -204983587 + L1ME4a LINE L1 5176 5392 -754 1890 152 0 4 chr1 37680777 37681053 -204983300 + AluJb SINE Alu 1 275 -37 273 298 24 0 chr1 37681199 37681283 -204983070 + L1ME4a LINE L1 5512 5597 -524 455 305 51 23 chr1 37681295 37681472 -204982881 + L2 LINE L2 2902 3083 -189 488 278 32 0 chr1 37681499 37681625 -204982728 - HAL1 LINE L1 -1889 618 489 417 38 0 0 chr1 37681627 37681680 -204982673 - AluSx SINE Alu -13 299 247 1224 111 23 0 chr1 37681680 37681852 -204982501 - AluSx SINE Alu -136 176 1 484 257 117 11 chr1 37681858 37682037 -204982316 - HAL1 LINE L1 -2031 476 279 725 235 145 39 chr1 37682118 37682505 -204981848 + L1ME4a LINE L1 5599 6026 -95 236 292 159 53 chr1 37682584 37682718 -204981635 + L3 LINE CR1 966 1084 -493 2489 97 0 0 chr1 37682718 37683028 -204981325 + AluSx SINE Alu 1 310 -2 236 292 159 53 chr1 37683028 37683119 -204981234 + L3 LINE CR1 1084 1215 -362 408 222 92 59 chr1 37683703 37683856 -204980497 - MIR3 SINE MIR -49 159 2 2564 153 44 11 chr1 37684052 37684504 -204979849 + MLT1C LTR MaLR 1 467 0 341 322 130 0 chr1 37685140 37685286 -204979067 - MIR SINE MIR -14 248 84 226 275 100 33 chr1 37685923 37686043 -204978310 + L2 LINE L2 2920 3047 -225 485 290 77 0 chr1 37689000 37689169 -204975184 + MIR SINE MIR 9 190 -72 280 243 14 0 chr1 37689439 37689513 -204974840 + G-rich Low_complexity Low_complexity 3 77 0 252 310 146 53 chr1 37690188 37690469 -204973884 - L2 LINE L2 -25 3247 2941 486 257 117 28 chr1 37690565 37690744 -204973609 + MIR SINE MIR 63 257 -5 189 111 22 89 chr1 37691210 37691255 -204973098 - MER5A DNA MER1_type -62 127 86 313 275 176 85 chr1 37691647 37691924 -204972429 + L2 LINE L2 2812 3133 -139 955 144 29 0 chr1 37691924 37692098 -204972255 - L1MB2 LINE L1 -2 6169 5991 313 275 176 85 chr1 37692098 37692195 -204972158 + L2 LINE L2 3133 3220 -52 301 104 0 0 chr1 37692237 37692285 -204972068 - MADE1 DNA Mariner 0 80 33 1104 212 137 43 chr1 37692285 37692474 -204971879 - L2 LINE L2 -21 3292 3122 2484 86 0 3 chr1 37692474 37692778 -204971575 - AluSc SINE Alu -6 303 1 1104 212 137 43 chr1 37692778 37693163 -204971190 - L2 LINE L2 -191 3122 2658 1442 163 123 21 chr1 37693550 37693875 -204970478 - MLT1A1 LTR MaLR -4 361 4 455 199 291 0 chr1 37694615 37694766 -204969587 + LTR33 LTR ERVL 3 197 -324 456 211 0 21 chr1 37694833 37694928 -204969425 + LTR33 LTR ERVL 429 521 0 230 198 25 0 chr1 37695856 37695937 -204968416 + (CCCCAG)n Simple_repeat Simple_repeat 4 86 0 736 215 74 6 chr1 37697706 37697869 -204966484 - MIR SINE MIR -14 248 75 491 279 29 7 chr1 37697901 37698041 -204966312 - MIR SINE MIR 0 262 120 208 222 0 0 chr1 37698064 37698100 -204966253 + MIR SINE MIR 224 259 -3 227 296 239 0 chr1 37698108 37698196 -204966157 - MIR SINE MIR -140 122 14 456 296 30 0 chr1 37698263 37698398 -204965955 - MIR SINE MIR -80 182 44 301 245 338 0 chr1 37698761 37698900 -204965453 + L2 LINE L2 2571 2756 -558 538 253 41 20 chr1 37698957 37699103 -204965250 + L2 LINE L2 2925 3073 -240 1119 159 0 0 chr1 37699133 37699303 -204965050 - AluJb SINE Alu -14 298 129 467 185 169 79 chr1 37699307 37699496 -204964857 + L2 LINE L2 3108 3313 0 366 270 124 15 chr1 37699773 37699910 -204964443 + MIR SINE MIR 13 164 -98 584 204 84 76 chr1 37701362 37701587 -204962766 - L1MC4a LINE L1 -1892 5916 5690 463 200 45 18 chr1 37701829 37701939 -204962414 - MER94 DNA DNA -20 114 2 519 287 90 16 chr1 37701992 37702180 -204962173 - MIR SINE MIR -29 233 32 750 279 233 5 chr1 37702376 37702788 -204961565 + L2 LINE L2 1797 2302 -1012 1335 263 87 46 chr1 37702882 37703728 -204960625 - L1MC4a LINE L1 -743 5403 5039 617 75 0 0 chr1 37703753 37703833 -204960520 - MADE1 DNA Mariner 0 80 1 466 297 112 7 chr1 37703834 37704146 -204960207 + L2 LINE L2 2714 3064 -249 231 293 0 30 chr1 37704533 37704700 -204959653 + (TGG)n Simple_repeat Simple_repeat 3 164 0 263 281 0 30 chr1 37704719 37704886 -204959467 + (TGG)n Simple_repeat Simple_repeat 3 164 0 228 282 0 34 chr1 37704905 37705054 -204959299 + (TGG)n Simple_repeat Simple_repeat 3 146 0 2771 254 59 97 chr1 37705790 37706647 -204957706 + L2 LINE L2 1477 2365 -948 288 103 0 118 chr1 37706647 37706715 -204957638 + MER53 DNA DNA 1 60 -129 2771 254 59 97 chr1 37706715 37706744 -204957609 + L2 LINE L2 2365 2394 -919 2671 58 0 3 chr1 37706744 37707054 -204957299 + AluSc SINE Alu 1 309 0 2771 254 59 97 chr1 37707054 37707937 -204956416 + L2 LINE L2 2394 3313 0 199 146 24 24 chr1 37708429 37708470 -204955883 - L3 LINE CR1 -855 722 682 190 325 38 0 chr1 37708459 37708539 -204955814 - L2 LINE L2 -867 2447 2365 * 1958 109 16 0 chr1 37708633 37708937 -204955416 - L1PB2 LINE L1 -3 6148 5840 180 0 0 0 chr1 37708945 37708965 -204955388 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3508 55 4 0 chr1 37708974 37709428 -204954925 - L1PA8 LINE L1 -9 6163 5708 617 298 66 41 chr1 37709643 37709728 -204954625 - L2 LINE L2 -972 2342 2261 2971 196 10 31 chr1 37709728 37710281 -204954072 + L1MB4 LINE L1 5513 6051 -129 1618 111 134 15 chr1 37710281 37710543 -204953810 + AluSg SINE Alu 1 293 -17 2971 196 10 31 chr1 37710543 37710671 -204953682 + L1MB4 LINE L1 6051 6180 0 617 298 66 41 chr1 37710671 37710904 -204953449 - L2 LINE L2 -1053 2261 2016 410 251 52 52 chr1 37710908 37711119 -204953234 - MLT1K LTR MaLR 0 588 378 911 331 128 23 chr1 37711379 37712232 -204952121 - L2 LINE L2 -1319 1995 1054 428 347 8 0 chr1 37712256 37712380 -204951973 - L2 LINE L2 -10 3262 3138 405 306 128 35 chr1 37712593 37713109 -204951244 + L2 LINE L2 1688 2251 -1063 21 0 0 0 chr1 37713305 37713326 -204951027 + AT_rich Low_complexity Low_complexity 1 21 0 243 211 174 28 chr1 37713894 37714003 -204950350 + L2 LINE L2 2198 2322 -992 3487 281 151 31 chr1 37714012 37714099 -204950254 - L2 LINE L2 -10 3303 3228 2713 45 0 0 chr1 37714099 37714408 -204949945 - AluY SINE Alu -2 309 1 3487 281 151 31 chr1 37714408 37716731 -204947622 - L2 LINE L2 -85 3228 600 766 300 208 15 chr1 37716733 37717516 -204946837 + L2 LINE L2 2315 3252 -20 184 327 173 5 chr1 37717539 37717747 -204946606 - L2 LINE L2 -2468 846 604 584 171 90 0 chr1 37718254 37718365 -204945988 + LTR16A1 LTR ERVL 1 121 -336 281 186 0 17 chr1 37718571 37718630 -204945723 + LTR16A1 LTR ERVL 400 457 0 192 244 69 50 chr1 37719119 37719279 -204945074 - L2 LINE L2 -292 2980 2818 239 349 82 13 chr1 37719438 37719753 -204944600 - L2 LINE L2 -766 2548 2212 310 317 92 14 chr1 37721556 37721698 -204942655 - MIR SINE MIR -81 181 29 353 292 117 15 chr1 37722497 37722634 -204941719 + L2 LINE L2 3121 3271 -1 274 264 275 6 chr1 37723699 37723877 -204940476 - MIR SINE MIR -3 259 34 206 347 65 42 chr1 37724149 37724365 -204939988 - MIR SINE MIR -11 251 31 579 295 80 21 chr1 37725348 37725585 -204938768 - MIR SINE MIR 0 262 12 1070 247 8 4 chr1 37726622 37726861 -204937492 - MIR SINE MIR -1 261 22 500 235 140 12 chr1 37727804 37727974 -204936379 + MIR SINE MIR 43 241 -21 191 254 17 17 chr1 37727989 37728048 -204936305 + MIR SINE MIR 194 252 -10 334 190 50 60 chr1 37728460 37728560 -204935793 + L2 LINE L2 3213 3311 -2 341 305 34 0 chr1 37728732 37728850 -204935503 - L2 LINE L2 -221 3051 2930 3271 195 20 0 chr1 37729095 37729735 -204934618 + MER82 DNA MER2_type 1 653 0 683 264 6 0 chr1 37729994 37730153 -204934200 - MIR SINE MIR -86 176 17 377 319 85 48 chr1 37730229 37730382 -204933971 - L2 LINE L2 0 3313 3167 432 0 0 0 chr1 37730382 37730430 -204933923 + (CA)n Simple_repeat Simple_repeat 2 49 0 377 319 85 48 chr1 37730430 37730571 -204933782 - L2 LINE L2 -146 3167 3008 773 154 136 12 chr1 37730835 37730997 -204933356 + MSTD LTR MaLR 1 182 -214 385 252 57 24 chr1 37731170 37731319 -204933034 + MIR SINE MIR 45 206 -55 1786 228 37 5 chr1 37732073 37732477 -204931876 + LTR16C LTR ERVL 75 491 0 370 306 88 62 chr1 37732574 37732993 -204931360 + MLT1K LTR MaLR 141 570 -18 298 149 0 0 chr1 37733025 37733072 -204931281 + L2 LINE L2 3261 3307 -6 194 297 44 44 chr1 37733071 37733162 -204931191 + MIR SINE MIR 102 192 -70 * 1077 193 90 100 chr1 37733173 37733573 -204930780 - MSTD LTR MaLR 0 396 1 631 265 88 5 chr1 37733895 37734099 -204930254 + Charlie8 DNA MER1_type 1 221 -2196 446 306 66 22 chr1 37734136 37734319 -204930034 - MIR SINE MIR -71 191 1 387 260 80 0 chr1 37735333 37735433 -204928920 - MIR SINE MIR -134 128 21 436 45 30 0 chr1 37735433 37735499 -204928854 - L1PA4 LINE L1 0 6155 6088 539 164 217 13 chr1 37735773 37735925 -204928428 + L1MD3 LINE L1 7813 7995 0 387 193 141 13 chr1 37736227 37736382 -204927971 - MIR SINE MIR -3 259 76 412 278 167 0 chr1 37736811 37736973 -204927380 + MIR SINE MIR 1 189 -73 207 139 0 0 chr1 37737239 37737275 -204927078 + (TG)n Simple_repeat Simple_repeat 1 36 0 297 261 235 17 chr1 37738019 37738138 -204926215 - MIR SINE MIR -20 242 98 1657 178 196 60 chr1 37738250 37738338 -204926015 - MLT1F1 LTR MaLR -23 544 469 1226 192 30 15 chr1 37738338 37738609 -204925744 + ORSL DNA AcHobo 1 275 0 1657 178 196 60 chr1 37738609 37738999 -204925354 - MLT1F1 LTR MaLR -98 469 1 444 300 33 17 chr1 37739082 37739262 -204925091 + L2 LINE L2 3131 3313 0 191 343 29 19 chr1 37740039 37740144 -204924209 - L2 LINE L2 -467 2847 2742 696 106 19 10 chr1 37740980 37741084 -204923269 - AluY SINE Alu -148 163 59 1306 140 5 10 chr1 37741095 37741295 -204923058 - AluSx SINE Alu -113 199 1 22 0 0 0 chr1 37741298 37741320 -204923033 + AT_rich Low_complexity Low_complexity 1 22 0 2317 183 48 42 chr1 37741505 37742025 -204922328 + MER44D DNA MER2_type 27 604 -1 212 304 183 9 chr1 37742796 37742911 -204921442 + MIR SINE MIR 8 142 -120 21 36 0 0 chr1 37744223 37744251 -204920102 + AT_rich Low_complexity Low_complexity 1 28 0 347 216 72 16 chr1 37744770 37744895 -204919458 - MER94 DNA DNA -2 132 1 582 279 82 10 chr1 37745112 37745358 -204918995 - LTR50 LTR ERVL -43 694 271 783 274 131 8 chr1 37745415 37745660 -204918693 - LTR50 LTR ERVL -516 279 5 702 314 60 24 chr1 37745660 37746030 -204918323 - L2 LINE L2 -835 2479 2097 372 290 65 7 chr1 37746040 37746178 -204918175 - L2 LINE L2 -1408 1906 1761 326 264 59 4 chr1 37746451 37746653 -204917700 - L1MC/D LINE L1 -386 5735 5596 2184 114 0 7 chr1 37746682 37746988 -204917365 - AluSg SINE Alu -4 306 3 2642 23 10 3 chr1 37747229 37747532 -204916821 - AluY SINE Alu -6 305 1 940 209 51 9 chr1 37947828 37948043 -204716310 - L1MEc LINE L1 -6141 255 32 365 257 9 106 chr1 37948080 37948166 -204716187 + MER58 DNA MER1_type 1 75 -140 1686 158 10 35 chr1 37948166 37948340 -204716013 - AluJb SINE Alu -9 303 139 2460 85 0 0 chr1 37948340 37948646 -204715707 - AluY SINE Alu -5 306 1 1686 158 10 35 chr1 37948646 37948782 -204715571 - AluJb SINE Alu -173 139 1 365 257 9 106 chr1 37948782 37948808 -204715545 + MER58 DNA MER1_type 75 102 -113 792 167 8 15 chr1 37948820 37948952 -204715401 + FLAM_C SINE Alu 2 132 -1 1513 181 16 56 chr1 37948959 37949280 -204715073 + AluJb SINE Alu 5 312 0 237 221 35 23 chr1 37949280 37949366 -204714987 - L1MEc LINE L1 -2786 3429 3343 1440 135 47 0 chr1 37949366 37949609 -204714744 - AluSx SINE Alu 0 312 60 1535 208 70 89 chr1 37949637 37949989 -204714364 - L1MEc LINE L1 -2923 3292 2935 2199 108 0 3 chr1 37949989 37950286 -204714067 - AluSg SINE Alu -14 296 1 1535 208 70 89 chr1 37950286 37950413 -204713940 - L1MEc LINE L1 -3280 2935 2807 1647 170 3 38 chr1 37950413 37950731 -204713622 - AluJb SINE Alu -5 307 1 1535 208 70 89 chr1 37950731 37950808 -204713545 - L1MEc LINE L1 -3408 2807 2730 2131 124 0 0 chr1 37950808 37951106 -204713247 - AluSc SINE Alu -11 298 1 1535 208 70 89 chr1 37951106 37951364 -204712989 - L1MEc LINE L1 -3485 2730 2492 369 161 97 0 chr1 37951420 37951482 -204712871 - AluS SINE Alu -234 69 2 1743 167 3 17 chr1 37951505 37951805 -204712548 - AluJo SINE Alu -10 302 7 354 248 180 53 chr1 37951822 37952086 -204712267 - L1MEc LINE L1 -3783 2432 2178 306 226 173 42 chr1 37952103 37952271 -204712082 - L1MEc LINE L1 -4266 2130 1941 755 230 26 49 chr1 37952321 37952547 -204711806 - L1MC4 LINE L1 -959 7083 6863 198 330 11 43 chr1 37952556 37952650 -204711703 + L2 LINE L2 2716 2806 -508 244 283 7 101 chr1 37953013 37953151 -204711202 + MIR3 SINE MIR 69 193 -15 25 31 0 0 chr1 37953436 37953468 -204710885 + AT_rich Low_complexity Low_complexity 1 32 0 2545 47 0 7 chr1 37953468 37953796 -204710557 - AluY SINE Alu 0 311 1 1185 90 0 6 chr1 37953803 37953959 -204710394 - AluSg/x SINE Alu -24 288 134 2117 125 7 7 chr1 37953959 37954254 -204710099 - AluSx SINE Alu -17 295 1 188 241 74 0 chr1 37954414 37954468 -204709885 - MIR SINE MIR -111 97 40 1986 129 3 7 chr1 37954543 37954838 -204709515 + AluJb SINE Alu 4 297 -15 27 0 0 0 chr1 37955124 37955151 -204709202 + AT_rich Low_complexity Low_complexity 1 27 0 2236 121 3 0 chr1 37955361 37955668 -204708685 - AluSq SINE Alu -5 308 1 524 228 0 7 chr1 37955903 37956039 -204708314 + CT-rich Low_complexity Low_complexity 1 135 0 529 164 41 75 chr1 37956040 37956186 -204708167 - FAM SINE Alu -3 46 1 1646 175 34 10 chr1 37956286 37956578 -204707775 + AluJo SINE Alu 1 299 -13 2281 86 0 21 chr1 37956837 37957175 -204707178 - AluSq SINE Alu 0 332 1 3059 274 114 23 chr1 37957243 37958476 -204705877 + L2 LINE L2 1688 3035 -278 889 186 0 53 chr1 37958476 37958624 -204705729 + FRAM SINE Alu 1 136 -176 2395 95 3 0 chr1 37958624 37958929 -204705424 - AluSx SINE Alu -6 306 1 889 186 0 53 chr1 37958929 37958968 -204705385 + FRAM SINE Alu 136 176 0 217 268 144 31 chr1 37958968 37959065 -204705288 + L2 LINE L2 3027 3134 -179 481 173 12 0 chr1 37959538 37959619 -204704734 + MER69A DNA AcHobo 42 123 -54 180 0 0 0 chr1 37960284 37960304 -204704049 + (T)n Simple_repeat Simple_repeat 1 20 0 2287 74 3 0 chr1 37960396 37960705 -204703648 + AluY SINE Alu 1 310 0 380 206 254 0 chr1 37960714 37960840 -204703513 - MIR SINE MIR -27 235 78 214 287 138 21 chr1 37960929 37961023 -204703330 + MIR SINE MIR 38 142 -66 383 344 41 0 chr1 37961203 37961325 -204703028 + MIR3 SINE MIR 33 159 -49 261 366 87 25 chr1 37962307 37962468 -204701885 + MIR3 SINE MIR 24 194 -14 36 0 0 0 chr1 37963418 37963454 -204700899 + GC_rich Low_complexity Low_complexity 1 36 0 521 242 134 18 chr1 37964387 37964575 -204699778 - MIR SINE MIR -18 244 38 2035 76 0 82 chr1 37964793 37965109 -204699244 + AluSx SINE Alu 7 296 -16 341 50 0 0 chr1 37965635 37965675 -204698678 - LTR57-int LTR ERVL -3256 2087 2048 2182 115 0 0 chr1 37965726 37966013 -204698340 - AluSx SINE Alu -25 287 1 820 183 33 0 chr1 37966132 37966285 -204698068 + FRAM SINE Alu 4 161 -5 2402 66 0 20 chr1 37967016 37967321 -204697032 - AluY SINE Alu -12 299 1 189 121 0 0 chr1 37967575 37967608 -204696745 + (CA)n Simple_repeat Simple_repeat 1 33 0 29 0 0 0 chr1 37968332 37968361 -204695992 + AT_rich Low_complexity Low_complexity 1 29 0 1515 154 39 77 chr1 37968630 37968941 -204695412 + AluJo SINE Alu 1 299 -13 323 198 257 0 chr1 37969059 37969160 -204695193 - MIR SINE MIR -30 232 106 2217 102 44 0 chr1 37969540 37969833 -204694520 - AluSg SINE Alu -4 306 1 273 222 28 28 chr1 37970052 37970124 -204694229 + MER116 DNA Mariner 6 77 -3 404 145 0 13 chr1 37970549 37970625 -204693728 + (TCCC)n Simple_repeat Simple_repeat 2 76 0 1024 212 72 107 chr1 37970643 37970914 -204693439 - L1MC5 LINE L1 -182 7779 7500 2044 138 3 0 chr1 37970914 37971211 -204693142 - AluSq SINE Alu -15 298 1 1024 212 72 107 chr1 37971211 37971399 -204692954 - L1MC5 LINE L1 -461 7500 7337 689 278 12 6 chr1 37971399 37971572 -204692781 + MER5B DNA MER1_type 1 174 -4 1024 212 72 107 chr1 37971572 37971626 -204692727 - L1MC5 LINE L1 -624 7337 7283 420 258 47 8 chr1 37971630 37971758 -204692595 + MER94 DNA DNA 2 134 0 902 215 72 69 chr1 37971902 37972237 -204692116 - L1MC5 LINE L1 -744 7217 6882 788 211 177 34 chr1 37972256 37972616 -204691737 - MLT1C LTR MaLR -3 464 11 1841 147 22 136 chr1 37972639 37972731 -204691622 - MLT1C-int LTR MaLR -14 1357 1256 2125 116 14 0 chr1 37972731 37973025 -204691328 - AluY SINE Alu -13 298 1 1841 147 22 136 chr1 37973025 37973389 -204690964 - MLT1C-int LTR MaLR -115 1256 953 3531 198 43 41 chr1 37973559 37974389 -204689964 - MLT1C-int LTR MaLR -496 875 44 771 118 0 27 chr1 37974830 37974940 -204689413 + FRAM SINE Alu 58 164 -12 2253 84 3 29 chr1 37975057 37975367 -204688986 - AluSq SINE Alu -7 306 5 24 0 0 0 chr1 37975562 37975586 -204688767 + AT_rich Low_complexity Low_complexity 1 24 0 2239 126 3 0 chr1 37975711 37976013 -204688340 - AluSq SINE Alu -10 303 1 519 262 45 82 chr1 37976053 37976273 -204688080 - L1ME1 LINE L1 -31 6135 5925 2298 106 0 7 chr1 37976273 37976576 -204687777 + AluSq SINE Alu 1 301 -12 519 262 45 82 chr1 37976576 37976622 -204687731 - L1ME1 LINE L1 -241 5925 5879 451 183 0 0 chr1 37976679 37976750 -204687603 + AluJ/FRAM SINE Alu 222 292 -20 354 315 112 52 chr1 37976791 37977023 -204687330 - L1MEc LINE L1 -4437 2284 2039 989 178 18 0 chr1 37977023 37977186 -204687167 - FRAM SINE Alu 0 166 1 1017 189 88 47 chr1 37977194 37977512 -204686841 - L1MEc LINE L1 -4707 1833 1503 825 114 8 0 chr1 37977514 37977637 -204686716 - L1MB4 LINE L1 -3 6177 6054 403 71 12 47 chr1 37977761 37977846 -204686507 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 1874 129 17 37 chr1 37977868 37978020 -204686333 - AluSx SINE Alu -24 288 143 2200 123 0 0 chr1 37978020 37978329 -204686024 - AluSx SINE Alu -3 309 1 1874 129 17 37 chr1 37978329 37978470 -204685883 - AluSx SINE Alu -169 143 1 2073 139 3 3 chr1 37978514 37978824 -204685529 - AluSx SINE Alu -2 310 1 34 42 0 0 chr1 37978913 37978961 -204685392 + AT_rich Low_complexity Low_complexity 1 48 0 1135 119 6 0 chr1 37978981 37979140 -204685213 + MER101 LTR ERV1 1 160 -314 2456 68 0 0 chr1 37979428 37979720 -204684633 - AluSx SINE Alu -20 292 1 1625 145 22 14 chr1 37979958 37980234 -204684119 + AluSx SINE Alu 35 312 0 1364 188 43 18 chr1 37980845 37981121 -204683232 + AluJo SINE Alu 14 296 -16 21 57 0 0 chr1 37981121 37981156 -204683197 + AT_rich Low_complexity Low_complexity 1 35 0 288 305 30 69 chr1 37981297 37981428 -204682925 - MIR3 SINE MIR -28 180 55 2878 184 17 9 chr1 37981503 37982030 -204682323 + Tigger6b DNA MER2_type 6 536 -1061 2357 83 0 0 chr1 37982031 37982319 -204682034 + AluSq SINE Alu 11 298 -15 2159 101 3 3 chr1 37982332 37982620 -204681733 + AluSq SINE Alu 1 288 -25 225 94 0 0 chr1 37982620 37982652 -204681701 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 3784 188 44 48 chr1 37982688 37983236 -204681117 + Tigger6b DNA MER2_type 671 1219 -378 2350 102 3 0 chr1 37983236 37983539 -204680814 - AluSx SINE Alu -8 304 1 3784 188 44 48 chr1 37983539 37983631 -204680722 + Tigger6b DNA MER2_type 1219 1310 -287 2237 120 0 7 chr1 37983631 37983939 -204680414 - AluSx SINE Alu -6 306 1 3784 188 44 48 chr1 37983939 37984068 -204680285 + Tigger6b DNA MER2_type 1310 1438 -159 2174 96 24 0 chr1 37984068 37984361 -204679992 - AluSp SINE Alu -13 300 1 3784 188 44 48 chr1 37984361 37984492 -204679861 + Tigger6b DNA MER2_type 1438 1570 -27 1840 147 14 7 chr1 37984524 37984810 -204679543 + AluJo SINE Alu 2 289 -23 3011 200 42 22 chr1 37985233 37986031 -204678322 + MER21B LTR ERV1 1 862 -1 207 0 0 0 chr1 37986770 37986793 -204677560 + (TG)n Simple_repeat Simple_repeat 2 24 0 509 237 9 9 chr1 37986800 37986914 -204677439 + MIR SINE MIR 103 216 -46 254 278 0 0 chr1 37986924 37986978 -204677375 + AluSg/x SINE Alu 133 186 -116 38 0 0 0 chr1 37986986 37987024 -204677329 + AT_rich Low_complexity Low_complexity 1 38 0 464 269 197 22 chr1 37987037 37987260 -204677093 + L1MC4a LINE L1 5614 5875 -1933 878 226 69 42 chr1 37987717 37987862 -204676491 - L2 LINE L2 -1372 1942 1802 2293 104 0 7 chr1 37987862 37988170 -204676183 - AluSg SINE Alu -4 306 1 2284 109 0 6 chr1 37988170 37988482 -204675871 - AluSx SINE Alu -1 311 1 878 226 69 42 chr1 37988482 37988596 -204675757 - L2 LINE L2 -1511 1803 1675 2375 74 0 46 chr1 37988708 37989034 -204675319 - AluY SINE Alu 0 311 1 228 237 26 70 chr1 37989264 37989378 -204674975 - HAL1 LINE L1 -1130 1377 1269 932 95 0 0 chr1 37989461 37989577 -204674776 - AluSc SINE Alu -193 116 1 689 259 104 48 chr1 37990943 37991259 -204673094 - L1ME4a LINE L1 -2 6119 5765 5522 146 30 9 chr1 37991259 37992038 -204672315 - MER6 DNA MER2_type -1 864 65 2108 130 0 3 chr1 37992038 37992339 -204672014 - AluSx SINE Alu -10 302 3 5522 146 30 9 chr1 37992339 37992406 -204671947 - MER6 DNA MER2_type -800 65 1 689 259 104 48 chr1 37992406 37992571 -204671782 - L1ME4a LINE L1 -356 5765 5611 314 246 0 15 chr1 37993035 37993100 -204671253 - MLT1K LTR MaLR -339 249 186 1627 170 16 53 chr1 37993453 37993776 -204670577 - AluJo SINE Alu -1 311 1 677 212 0 23 chr1 37994902 37995034 -204669319 - FLAM_C SINE Alu -4 129 1 21 57 0 0 chr1 37995035 37995070 -204669283 + AT_rich Low_complexity Low_complexity 1 35 0 1788 179 10 0 chr1 37995114 37995404 -204668949 + AluJo SINE Alu 1 293 -19 263 161 0 32 chr1 37995404 37995466 -204668887 + GA-rich Low_complexity Low_complexity 1 60 0 386 271 164 51 chr1 37995466 37995858 -204668495 - MLT1J LTR MaLR -69 442 1 1957 135 0 14 chr1 37996684 37997019 -204667334 + AluSx SINE Alu 1 331 0 23 54 0 0 chr1 37997255 37997292 -204667061 + AT_rich Low_complexity Low_complexity 1 37 0 1271 265 69 33 chr1 37997484 37997876 -204666477 - MLT1G LTR MaLR -16 574 169 999 217 10 10 chr1 37997887 37998094 -204666259 - AluJo SINE Alu -22 290 84 702 205 142 32 chr1 37998094 37998284 -204666069 - MLT1G LTR MaLR -380 215 5 1958 146 7 7 chr1 37998437 37998738 -204665615 - AluSx SINE Alu -11 301 1 1833 148 0 11 chr1 37999236 37999513 -204664840 + AluJo SINE Alu 23 296 -16 320 273 98 31 chr1 37999529 37999723 -204664630 - L1MC/D LINE L1 -2262 5546 5340 361 258 56 84 chr1 38000342 38000420 -204663933 - L1ME3A LINE L1 -220 5950 5871 2007 127 3 17 chr1 38000420 38000719 -204663634 - AluSg SINE Alu -15 295 1 361 258 56 84 chr1 38000719 38000818 -204663535 - L1ME3A LINE L1 -299 5871 5778 1160 138 30 35 chr1 38000820 38000851 -204663502 - L1MB2 LINE L1 -2 6169 6139 2051 78 89 4 chr1 38000851 38001132 -204663221 + AluY SINE Alu 1 305 -6 1160 138 30 35 chr1 38001132 38001331 -204663022 - L1MB2 LINE L1 -32 6139 5940 248 193 0 18 chr1 38001434 38001491 -204662862 - L1MB2 LINE L1 -339 5844 5789 287 90 13 128 chr1 38001543 38001570 -204662783 - L1M3 LINE L1 -334 5849 5820 2009 121 0 57 chr1 38001570 38001885 -204662468 - AluSq SINE Alu -16 297 1 287 90 13 128 chr1 38001885 38001935 -204662418 - L1M3 LINE L1 -363 5820 5781 1440 144 60 75 chr1 38001936 38002255 -204662098 + THE1C LTR MaLR 1 314 -61 1971 136 3 14 chr1 38002257 38002543 -204661810 + AluSx SINE Alu 1 283 -29 1405 190 50 53 chr1 38002721 38002843 -204661510 - MER58B DNA MER1_type -2079 341 220 2149 114 20 0 chr1 38002843 38003140 -204661213 + AluSx SINE Alu 1 303 -9 1405 190 50 53 chr1 38003140 38003359 -204660994 - MER58B DNA MER1_type -2200 220 1 433 136 0 0 chr1 38003451 38003510 -204660843 + Tigger2 DNA MER2_type 1 59 -2659 237 176 235 0 chr1 38003529 38003580 -204660773 - MER2 DNA MER2_type 0 345 283 * 723 195 27 76 chr1 38003558 38003743 -204660610 - MER8 DNA MER2_type -62 177 2 654 282 85 45 chr1 38003744 38004238 -204660115 - L1MB2 LINE L1 -607 5563 5090 1966 150 0 42 chr1 38004238 38004418 -204659935 - MER2 DNA MER2_type 0 344 185 2132 113 0 0 chr1 38004418 38004702 -204659651 - AluSq SINE Alu -16 297 14 1966 150 0 42 chr1 38004702 38004880 -204659473 - MER2 DNA MER2_type -159 185 1 654 282 85 45 chr1 38004880 38005464 -204658889 - L1MB2 LINE L1 -1080 5090 4447 3262 129 0 69 chr1 38005465 38006030 -204658323 - MER1A DNA MER1_type -1 526 1 428 296 166 24 chr1 38006059 38006306 -204658047 - L1M4 LINE L1 -1120 5026 4745 23 0 0 0 chr1 38006682 38006705 -204657648 + AT_rich Low_complexity Low_complexity 1 23 0 526 251 18 27 chr1 38007124 38007343 -204657010 - L1M4 LINE L1 -2540 3606 3390 1423 160 25 25 chr1 38007343 38007618 -204656735 - AluJo SINE Alu -14 298 24 1471 206 111 85 chr1 38007653 38007849 -204656504 - L1ME LINE L1 -679 5483 5294 1633 152 0 40 chr1 38007849 38008147 -204656206 - AluJb SINE Alu 0 302 16 1471 206 111 85 chr1 38008147 38008280 -204656073 - L1ME LINE L1 -868 5294 5166 204 97 0 0 chr1 38008280 38008311 -204656042 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 1471 206 111 85 chr1 38008311 38008763 -204655590 - L1ME LINE L1 -996 5166 4672 2329 86 3 0 chr1 38008763 38009064 -204655289 + AluSx SINE Alu 1 302 -10 1471 206 111 85 chr1 38009064 38009230 -204655123 - L1ME LINE L1 -1490 4672 4512 2156 122 7 0 chr1 38009230 38009534 -204654819 - AluSx SINE Alu -6 306 1 1536 254 52 31 chr1 38009534 38010207 -204654146 - L1ME LINE L1 -2010 4136 3394 440 198 83 25 chr1 38010221 38010342 -204654011 + MER3 DNA MER1_type 22 149 -60 269 108 0 0 chr1 38010342 38010379 -204653974 + U2 snRNA snRNA 1 37 -151 234 200 33 17 chr1 38010378 38010438 -204653915 + MER3 DNA MER1_type 148 208 -1 * 329 216 57 0 chr1 38010528 38010616 -204653737 - L1ME LINE L1 -2784 3362 3270 1614 172 28 7 chr1 38010637 38010927 -204653426 - AluSq SINE Alu -17 296 1 2240 170 40 7 chr1 38010962 38011415 -204652938 - L1MB2 LINE L1 -4 6167 5700 2217 131 0 0 chr1 38011554 38011860 -204652493 + AluSx SINE Alu 6 311 -1 562 235 71 18 chr1 38011991 38012161 -204652192 - MER58C DNA MER1_type -5 210 32 2236 89 0 7 chr1 38012192 38012485 -204651868 - AluSq SINE Alu -22 291 1 1979 136 27 0 chr1 38014165 38014466 -204649887 - AluSx SINE Alu -3 309 1 2255 109 0 7 chr1 38014724 38015027 -204649326 + AluSx SINE Alu 1 301 -11 36 53 0 0 chr1 38015102 38015159 -204649194 + AT_rich Low_complexity Low_complexity 1 57 0 1557 146 4 8 chr1 38015159 38015399 -204648954 - AluJo SINE Alu -25 287 49 2199 106 7 0 chr1 38015477 38015769 -204648584 - AluSx SINE Alu -18 294 1 889 175 26 7 chr1 38017299 38017453 -204646900 + AluJo SINE Alu 1 157 -155 198 0 0 0 chr1 38017454 38017476 -204646877 + (CA)n Simple_repeat Simple_repeat 1 22 0 324 200 0 3 chr1 38017478 38017552 -204646801 + AluJo SINE Alu 82 138 -164 342 0 0 0 chr1 38017553 38017591 -204646762 + (CA)n Simple_repeat Simple_repeat 1 38 0 2029 274 89 54 chr1 38017795 38018771 -204645582 + L2 LINE L2 1927 2936 -378 1799 172 19 13 chr1 38019050 38019358 -204644995 + AluJb SINE Alu 1 310 -2 648 296 103 21 chr1 38019413 38019627 -204644726 - L1MC4a LINE L1 -1926 5882 5630 2392 96 0 3 chr1 38019627 38019940 -204644413 + AluSx SINE Alu 1 312 0 648 296 103 21 chr1 38019940 38020056 -204644297 - L1MC4a LINE L1 -2178 5630 5525 476 145 0 13 chr1 38020059 38020135 -204644218 - MER58A DNA MER1_type 0 224 150 2242 84 6 43 chr1 38020217 38020539 -204643814 - AluY SINE Alu -1 310 1 1624 170 67 0 chr1 38021138 38021408 -204642945 + AluSx SINE Alu 1 288 -24 302 279 54 48 chr1 38021626 38021773 -204642580 - L1MC4 LINE L1 -803 7239 7092 418 342 0 9 chr1 38021841 38021955 -204642398 + L2 LINE L2 3160 3272 0 193 324 14 14 chr1 38021966 38022037 -204642316 - L2 LINE L2 -557 2757 2687 1681 158 10 48 chr1 38022089 38022380 -204641973 - AluJo SINE Alu -30 282 3 231 227 187 0 chr1 38022405 38022480 -204641873 - MLT1K LTR MaLR 0 588 500 192 323 48 0 chr1 38023568 38023630 -204640723 + MIR3 SINE MIR 8 72 -136 254 323 126 36 chr1 38023647 38023870 -204640483 - MIR SINE MIR 0 262 20 36 23 0 0 chr1 38025020 38025063 -204639290 + AT_rich Low_complexity Low_complexity 1 43 0 228 387 99 7 chr1 38025427 38025569 -204638784 + L2 LINE L2 3102 3256 -16 27 0 0 0 chr1 38026128 38026155 -204638198 + AT_rich Low_complexity Low_complexity 1 27 0 1597 157 42 54 chr1 38027883 38028081 -204636272 - AluJb SINE Alu -1 311 117 1809 139 7 4 chr1 38028081 38028355 -204635998 + AluSx SINE Alu 1 275 -37 1597 157 42 54 chr1 38028355 38028469 -204635884 - AluJb SINE Alu -195 117 3 865 175 19 25 chr1 38028501 38028661 -204635692 - MER20 DNA MER1_type 0 219 61 248 348 37 43 chr1 38030254 38030418 -204633935 - MIR SINE MIR -42 220 58 216 0 0 0 chr1 38030431 38030455 -204633898 + (T)n Simple_repeat Simple_repeat 1 24 0 2052 122 0 39 chr1 38031921 38032233 -204632120 + AluSq SINE Alu 1 300 -13 2055 118 0 36 chr1 38032412 38032718 -204631635 - AluSq SINE Alu -18 295 1 2006 115 39 0 chr1 38032888 38033167 -204631186 + AluSx SINE Alu 5 294 -18 1043 163 8 119 chr1 38033211 38033463 -204630890 + MER58A DNA MER1_type 1 224 0 440 275 59 45 chr1 38033757 38033979 -204630374 + L1ME4a LINE L1 5523 5747 -374 1143 152 33 5 chr1 38034016 38034226 -204630127 - MER96B DNA MER1_type? -201 216 1 416 258 139 24 chr1 38034630 38034917 -204629436 + L1ME4a LINE L1 5791 6110 -11 31 58 0 0 chr1 38034927 38034979 -204629374 + AT_rich Low_complexity Low_complexity 1 52 0 207 196 0 0 chr1 38035164 38035210 -204629143 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 297 89 0 0 chr1 38035514 38035559 -204628794 + (T)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chr1 38035919 38035941 -204628412 + (T)n Simple_repeat Simple_repeat 1 22 0 405 0 0 0 chr1 38036254 38036299 -204628054 + (TG)n Simple_repeat Simple_repeat 1 45 0 2280 71 0 3 chr1 38036302 38036605 -204627748 - AluY SINE Alu 0 302 1 497 319 57 27 chr1 38037175 38037510 -204626843 - MARNA DNA Mariner -156 430 86 811 157 108 3 chr1 38037561 38037789 -204626564 + L1MA8 LINE L1 5989 6223 -68 1281 145 39 30 chr1 38037810 38038044 -204626309 - MER46A DNA MER2_type 0 236 1 1791 154 0 4 chr1 38038065 38038338 -204626015 + AluSx SINE Alu 1 272 -40 255 61 0 0 chr1 38038411 38038444 -204625909 + (TA)n Simple_repeat Simple_repeat 1 33 0 1691 93 4 62 chr1 38038544 38038803 -204625550 - AluY SINE Alu -67 244 1 1078 113 0 0 chr1 38038805 38038947 -204625406 - AluY SINE Alu -169 142 1 2516 73 0 10 chr1 38039130 38039443 -204624910 - AluSp SINE Alu -2 311 2 726 155 0 9 chr1 38039629 38039745 -204624608 + FLAM_A SINE Alu 1 115 -18 1768 195 0 0 chr1 38040904 38041202 -204623151 + AluJo SINE Alu 1 298 -14 2309 84 0 14 chr1 38041640 38041936 -204622417 - AluSc SINE Alu -17 292 1 2320 90 0 0 chr1 38042029 38042317 -204622036 - AluSx SINE Alu -24 288 1 11366 132 88 73 chr1 38042589 38044205 -204620148 - Tigger1 DNA MER2_type -1 2417 827 2103 122 0 3 chr1 38044205 38044509 -204619844 - AluSc SINE Alu -6 303 1 932 102 0 7 chr1 38044509 38044646 -204619707 - AluSq/x SINE Alu -176 136 1 11366 132 88 73 chr1 38044646 38045251 -204619102 - Tigger1 DNA MER2_type -1590 828 24 2221 82 4 0 chr1 38045409 38045736 -204618617 - AluY SINE Alu 0 328 1 344 225 78 8 chr1 38045996 38046125 -204618228 - L1ME4a LINE L1 -15 6106 5969 237 292 56 0 chr1 38046134 38046206 -204618147 - MIR SINE MIR -76 186 111 2454 86 0 0 chr1 38046973 38047275 -204617078 + AluSp SINE Alu 1 302 -11 239 227 68 11 chr1 38047277 38047365 -204616988 - L1MC4 LINE L1 -1340 6702 6610 201 147 0 0 chr1 38047365 38047399 -204616954 + (TA)n Simple_repeat Simple_repeat 1 34 0 2007 102 27 20 chr1 38047564 38047857 -204616496 - AluSx SINE Alu -17 295 1 336 21 0 0 chr1 38048353 38048400 -204615953 - L1MA3 LINE L1 0 6305 6259 24 0 0 0 chr1 38048405 38048429 -204615924 + AT_rich Low_complexity Low_complexity 1 24 0 324 339 21 24 chr1 38048884 38049116 -204615237 + MIR SINE MIR 12 243 -19 452 249 18 98 chr1 38049861 38049939 -204614414 - MER112 DNA MER1_type -1 255 172 2021 121 9 19 chr1 38049939 38050254 -204614099 - AluSx SINE Alu 0 312 1 452 249 18 98 chr1 38050254 38050452 -204613901 - MER112 DNA MER1_type -84 172 1 1956 136 149 8 chr1 38051346 38051721 -204612632 - MSTA LTR MaLR 0 428 1 285 289 62 0 chr1 38051970 38052067 -204612286 + L2 LINE L2 3199 3301 -12 369 165 68 29 chr1 38053223 38053305 -204611048 + MER112 DNA MER1_type 5 93 -167 2398 104 0 0 chr1 38053305 38053614 -204610739 - AluSx SINE Alu -3 309 1 369 165 68 29 chr1 38053614 38053634 -204610719 + MER112 DNA MER1_type 93 111 -149 196 30 61 0 chr1 38053687 38053720 -204610633 + A-rich Low_complexity Low_complexity 3 37 0 853 112 15 22 chr1 38053811 38053945 -204610408 - FLAM_C SINE Alu 0 133 1 224 333 39 0 chr1 38054892 38054970 -204609383 + L2 LINE L2 3098 3178 -94 2357 108 3 0 chr1 38054975 38055282 -204609071 - AluSx SINE Alu -4 308 1 1645 138 116 8 chr1 38055413 38055681 -204608672 - AluSg1 SINE Alu -12 297 1 451 284 89 5 chr1 38055701 38055891 -204608462 + MIR SINE MIR 46 251 -11 418 242 38 147 chr1 38057202 38057240 -204607113 + MIR SINE MIR 2 43 -219 1894 158 3 16 chr1 38057240 38057544 -204606809 + AluJo SINE Alu 1 300 -12 418 242 38 147 chr1 38057544 38057630 -204606723 + MIR SINE MIR 43 137 -125 1606 173 25 62 chr1 38057630 38057641 -204606712 - AluJo SINE Alu -1 311 301 189 0 0 0 chr1 38057641 38057662 -204606691 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 411 38 0 0 chr1 38057661 38057714 -204606639 + (TG)n Simple_repeat Simple_repeat 2 54 0 1606 173 25 62 chr1 38057662 38058025 -204606328 - AluJo SINE Alu -11 301 1 418 242 38 147 chr1 38058025 38058192 -204606161 + MIR SINE MIR 137 262 0 2180 119 0 0 chr1 38058282 38058575 -204605778 - AluSx SINE Alu -19 293 1 2305 119 0 0 chr1 38059371 38059681 -204604672 - AluSx SINE Alu 0 312 3 330 243 10 39 chr1 38059695 38059798 -204604555 + L2 LINE L2 3136 3235 -37 2288 91 7 3 chr1 38060092 38060388 -204603965 + AluSq SINE Alu 1 297 -16 881 263 4 52 chr1 38060421 38060585 -204603768 - MIR SINE MIR -1 261 114 2183 128 7 0 chr1 38060585 38060883 -204603470 + AluSq SINE Alu 1 300 -13 881 263 4 52 chr1 38060883 38060988 -204603365 - MIR SINE MIR -148 114 5 248 332 39 17 chr1 38061002 38061272 -204603081 + L1ME LINE L1 5233 5514 -652 1000 179 115 12 chr1 38061293 38061608 -204602745 - L1MC4 LINE L1 -848 6960 6594 2518 77 0 0 chr1 38061764 38062075 -204602278 + AluY SINE Alu 1 311 0 2092 100 7 0 chr1 38062097 38062484 -204601869 - AluSx SINE Alu 0 389 1 264 59 0 0 chr1 38062490 38062524 -204601829 + (TTCTC)n Simple_repeat Simple_repeat 1 34 0 1737 163 0 14 chr1 38062530 38062671 -204601682 - AluSx SINE Alu -39 273 136 2087 134 0 3 chr1 38062671 38062969 -204601384 - AluSq SINE Alu -16 297 1 1737 163 0 14 chr1 38062969 38063104 -204601249 - AluSx SINE Alu -176 136 1 2343 138 13 100 chr1 38063113 38063266 -204601087 - L1MC3 LINE L1 -8 7777 7612 2080 91 4 4 chr1 38063266 38063531 -204600822 - AluSx SINE Alu -18 294 30 2343 138 13 100 chr1 38063531 38063905 -204600448 - L1MC3 LINE L1 -173 7612 7296 180 0 0 0 chr1 38063915 38063935 -204600418 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1873 153 20 0 chr1 38063944 38064244 -204600109 - AluSx SINE Alu -6 306 1 1448 189 3 39 chr1 38064432 38064717 -204599636 + AluJo SINE Alu 13 287 -25 2718 13 0 10 chr1 38064724 38065028 -204599325 + AluY SINE Alu 1 301 -10 912 188 0 0 chr1 38065031 38065253 -204599100 + FRAM SINE Alu 1 86 0 1081 243 53 88 chr1 38065253 38065623 -204598730 - MLT1J LTR MaLR -92 419 64 2220 71 7 7 chr1 38065623 38065930 -204598423 + AluY SINE Alu 1 307 0 1081 243 53 88 chr1 38065930 38065990 -204598363 - MLT1J LTR MaLR -447 64 3 2506 97 0 0 chr1 38066131 38066442 -204597911 - AluSq SINE Alu -2 311 1 1923 157 0 3 chr1 38066707 38067000 -204597353 - AluSx SINE Alu -20 292 1 299 268 113 21 chr1 38067492 38067634 -204596719 - MIR SINE MIR -16 246 92 1904 168 0 3 chr1 38067783 38068086 -204596267 - AluJb SINE Alu -2 310 9 349 290 136 18 chr1 38068137 38068306 -204596047 + MER5A DNA MER1_type 1 189 0 718 217 7 0 chr1 38068840 38068983 -204595370 - MER69 DNA AcHobo -2 2524 2381 440 141 0 0 chr1 38069129 38069193 -204595160 - MER69 DNA AcHobo -1159 67 4 753 135 88 100 chr1 38069227 38069397 -204594956 - AluJb SINE Alu -8 304 137 22 35 0 0 chr1 38069502 38069531 -204594822 + AT_rich Low_complexity Low_complexity 1 29 0 810 127 17 0 chr1 38069531 38069649 -204594704 - FLAM_C SINE Alu -23 120 1 2135 130 3 0 chr1 38069915 38070214 -204594139 - AluSx SINE Alu -12 300 1 280 289 16 55 chr1 38070339 38070467 -204593886 - MIR3 SINE MIR -45 163 41 511 289 6 6 chr1 38070637 38070793 -204593560 + L1ME LINE L1 5565 5720 -401 2140 119 0 0 chr1 38070807 38071128 -204593225 + AluSc SINE Alu 3 323 0 2075 133 0 7 chr1 38071132 38071432 -204592921 + AluSx SINE Alu 1 298 -14 26 50 0 0 chr1 38071453 38071493 -204592860 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr1 38071653 38071681 -204592672 + AT_rich Low_complexity Low_complexity 1 28 0 2270 101 0 14 chr1 38071681 38071978 -204592375 - AluSx SINE Alu -19 293 1 261 0 0 0 chr1 38071978 38072007 -204592346 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1861 109 4 0 chr1 38072007 38072254 -204592099 - AluSq SINE Alu -30 283 36 1405 194 0 78 chr1 38072264 38072583 -204591770 - AluJo SINE Alu -18 294 1 1199 249 128 85 chr1 38072584 38073201 -204591152 - HAL1 LINE L1 -201 2306 1634 1442 186 49 33 chr1 38073201 38073445 -204590908 + AluJb SINE Alu 1 252 -60 183 42 0 0 chr1 38073445 38073469 -204590884 + (CACTG)n Simple_repeat Simple_repeat 1 24 0 1442 186 49 33 chr1 38073469 38073531 -204590822 + AluJb SINE Alu 252 312 0 1199 249 128 85 chr1 38073531 38073854 -204590499 - HAL1 LINE L1 -873 1634 1326 2110 102 7 0 chr1 38074065 38074340 -204590013 + AluY SINE Alu 13 289 -22 2228 109 3 0 chr1 38074747 38075041 -204589312 - AluSg SINE Alu -15 295 1 762 170 17 0 chr1 38075342 38075505 -204588848 - MER51A LTR ERV1 -3 637 480 244 114 114 139 chr1 38075596 38075675 -204588678 - MER51A LTR ERV1 -383 251 175 529 290 23 12 chr1 38075716 38075896 -204588457 - MER51A LTR ERV1 -339 301 1 310 318 54 0 chr1 38075898 38076046 -204588307 - MIR SINE MIR -25 237 82 216 350 61 18 chr1 38076254 38076289 -204588064 - L2 LINE L2 -240 3032 3000 1750 123 123 0 chr1 38076289 38076558 -204587795 - AluSx SINE Alu 0 302 1 216 350 61 18 chr1 38076558 38076685 -204587668 - L2 LINE L2 -272 3000 2863 326 244 42 101 chr1 38076826 38076945 -204587408 + Charlie1 DNA MER1_type 1 112 -2649 801 178 89 0 chr1 38077002 38077148 -204587205 - FAM SINE Alu -7 42 1 630 220 23 35 chr1 38077148 38077321 -204587032 + Charlie1 DNA MER1_type 1906 2076 -685 986 187 25 5 chr1 38077348 38077546 -204586807 - L1MB2 LINE L1 -50 6121 5920 243 0 0 0 chr1 38077593 38077620 -204586733 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1805 138 0 0 chr1 38077633 38077879 -204586474 - AluSq SINE Alu -47 266 21 2475 128 2 33 chr1 38077954 38078069 -204586284 - L1MB2 LINE L1 -240 5931 5814 2215 127 0 0 chr1 38078069 38078377 -204585976 + AluSx SINE Alu 1 308 -4 2475 128 2 33 chr1 38078377 38078660 -204585693 - L1MB2 LINE L1 -357 5814 5545 4936 174 74 61 chr1 38078661 38078780 -204585573 + Charlie1a DNA MER1_type 100 216 -2545 2329 62 10 7 chr1 38078780 38079071 -204585282 - AluY SINE Alu -19 292 1 4936 174 74 61 chr1 38079071 38079184 -204585169 + Charlie1a DNA MER1_type 216 326 -2435 2294 115 3 0 chr1 38079184 38079488 -204584865 - AluSx SINE Alu -7 305 1 4936 174 74 61 chr1 38079488 38079604 -204584749 + Charlie1a DNA MER1_type 326 439 -2322 2281 115 3 0 chr1 38079604 38079916 -204584437 - AluSq SINE Alu 0 313 1 4936 174 74 61 chr1 38079916 38080420 -204583933 + Charlie1a DNA MER1_type 439 935 -1826 1945 116 6 69 chr1 38080420 38080515 -204583838 + AluSx SINE Alu 1 100 -212 2128 131 3 3 chr1 38080515 38080820 -204583533 + AluSq SINE Alu 1 305 -8 1945 116 6 69 chr1 38080820 38081044 -204583309 + AluSx SINE Alu 100 300 -12 4936 174 74 61 chr1 38081044 38081268 -204583085 + Charlie1a DNA MER1_type 935 1201 -1560 1899 123 62 0 chr1 38081268 38081560 -204582793 + AluSx SINE Alu 1 310 -2 4936 174 74 61 chr1 38081560 38081732 -204582621 + Charlie1a DNA MER1_type 1201 1369 -86 555 124 9 53 chr1 38081741 38081757 -204582596 - AluSg/x SINE Alu -1 308 293 1905 101 28 103 chr1 38081757 38081938 -204582415 - L1MA2 LINE L1 0 6304 6168 2208 98 3 17 chr1 38081938 38082235 -204582118 - AluSp SINE Alu -20 293 1 1905 101 28 103 chr1 38082235 38082450 -204581903 - L1MA2 LINE L1 -136 6168 5938 555 124 9 53 chr1 38082450 38082546 -204581807 - AluSg/x SINE Alu -16 293 201 516 117 0 78 chr1 38082694 38082805 -204581548 - L1 LINE L1 -1903 4243 4142 264 77 0 0 chr1 38082819 38082858 -204581495 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2076 111 7 0 chr1 38082861 38083141 -204581212 - AluSq SINE Alu -31 282 1 270 204 0 0 chr1 38083143 38083197 -204581156 + Charlie1a DNA MER1_type 1398 1451 -4 202 309 62 0 chr1 38083242 38083289 -204581064 - L2 LINE L2 -609 2705 2662 210 37 0 0 chr1 38083289 38083316 -204581037 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 202 309 62 0 chr1 38083316 38083365 -204580988 - L2 LINE L2 -652 2662 2603 531 286 141 60 chr1 38083431 38083664 -204580689 + L1MC4a LINE L1 5423 5636 -2172 279 0 0 0 chr1 38083664 38083695 -204580658 + (TA)n Simple_repeat Simple_repeat 1 31 0 531 286 141 60 chr1 38083695 38083855 -204580498 + L1MC4a LINE L1 5636 5782 -2026 1517 201 3 20 chr1 38083855 38084148 -204580205 + AluJb SINE Alu 1 288 -24 531 286 141 60 chr1 38084148 38084221 -204580132 + L1MC4a LINE L1 5782 5928 -1880 2473 62 0 38 chr1 38084232 38084552 -204579801 + AluY SINE Alu 1 308 -3 390 21 0 0 chr1 38084560 38084607 -204579746 + (TG)n Simple_repeat Simple_repeat 2 48 0 1766 133 3 58 chr1 38085185 38085479 -204578874 - AluJo SINE Alu -25 287 10 460 179 49 16 chr1 38085539 38085662 -204578691 - MIR SINE MIR -83 179 53 1769 141 8 0 chr1 38085674 38085937 -204578416 - AluSx SINE Alu -6 306 42 415 270 29 46 chr1 38085951 38086125 -204578228 + MIR3 SINE MIR 1 171 -37 1818 151 14 7 chr1 38086230 38086549 -204577804 + AluSx SINE Alu 1 321 0 2339 77 0 27 chr1 38086586 38086885 -204577468 - AluSc SINE Alu -18 291 1 476 209 108 8 chr1 38087050 38087179 -204577174 - FLAM_C SINE Alu 0 143 2 2514 62 0 3 chr1 38087525 38087830 -204576523 + AluY SINE Alu 1 304 -7 1860 180 3 0 chr1 38088075 38088381 -204575972 - AluJo SINE Alu -4 308 2 1799 187 15 12 chr1 38088438 38088781 -204575572 + MLT1E1 LTR MaLR 1 344 -310 657 156 18 0 chr1 38088785 38088917 -204575436 + AluSg/x SINE Alu 171 304 0 935 221 17 0 chr1 38088917 38089089 -204575264 + MLT1E1 LTR MaLR 339 513 -141 1694 123 0 0 chr1 38089126 38089353 -204575000 + AluSx SINE Alu 1 227 -85 767 116 16 8 chr1 38089453 38089597 -204574756 + AluY SINE Alu 161 305 0 935 221 17 0 chr1 38089597 38089769 -204574584 + MLT1E1 LTR MaLR 339 513 -141 2218 108 14 0 chr1 38089806 38090102 -204574251 + AluSx SINE Alu 1 300 -12 318 26 0 0 chr1 38090114 38090153 -204574200 + (TG)n Simple_repeat Simple_repeat 2 40 0 1147 244 145 41 chr1 38090174 38090539 -204573814 - MLT1H LTR MaLR -13 536 134 2357 211 16 2 chr1 38090541 38091047 -204573306 + L1ME2 LINE L1 5652 6164 0 183 241 241 0 chr1 38091122 38091205 -204573148 + MIR SINE MIR 70 172 -90 4506 151 24 109 chr1 38091206 38091244 -204573109 - L1MB3 LINE L1 0 6183 6143 2263 119 3 3 chr1 38091244 38091556 -204572797 + AluSx SINE Alu 1 312 0 4506 151 24 109 chr1 38091556 38091868 -204572485 - L1MB3 LINE L1 -40 6143 5806 2329 92 6 19 chr1 38091868 38092183 -204572170 - AluSq SINE Alu -2 311 1 4506 151 24 109 chr1 38092183 38092709 -204571644 - L1MB3 LINE L1 -377 5806 5237 2333 107 0 3 chr1 38092709 38093018 -204571335 - AluSx SINE Alu -4 308 1 1976 128 13 32 chr1 38093028 38093340 -204571013 - AluSx SINE Alu -6 306 1 4506 151 24 109 chr1 38093340 38093352 -204571001 - L1MB3 LINE L1 -955 5228 5217 2418 96 0 6 chr1 38093352 38093664 -204570689 - AluSg SINE Alu 0 310 1 4506 151 24 109 chr1 38093664 38093879 -204570474 - L1MB3 LINE L1 -966 5217 4985 1751 183 3 0 chr1 38093879 38094164 -204570189 - AluJb SINE Alu -23 289 4 4506 151 24 109 chr1 38094164 38094193 -204570160 - L1MB3 LINE L1 -1198 4985 5175 770 139 0 76 chr1 38094193 38094337 -204570016 - FLAM_C SINE Alu 0 133 1 4506 151 24 109 chr1 38094337 38094477 -204569876 - L1MB3 LINE L1 -1007 5176 5026 2527 47 10 7 chr1 38094477 38094778 -204569575 + AluY SINE Alu 1 302 -9 2041 73 45 42 chr1 38094907 38095193 -204569160 - AluSc SINE Alu -22 287 1 4467 203 19 63 chr1 38095193 38095757 -204568596 - L1MB3 LINE L1 -1190 4956 4368 1492 121 0 0 chr1 38095757 38096001 -204568352 - AluSg/x SINE Alu 0 312 89 4467 203 19 63 chr1 38096001 38096498 -204567855 - L1MB3 LINE L1 -1778 4368 3949 1878 155 7 17 chr1 38096498 38096795 -204567558 + AluJb SINE Alu 1 294 -18 4467 203 19 63 chr1 38096795 38096900 -204567453 - L1MB3 LINE L1 -2197 3949 3841 1030 185 0 0 chr1 38096918 38097091 -204567262 - FRAM SINE Alu -3 173 1 332 169 0 46 chr1 38097094 38097159 -204567194 - L1MB3 LINE L1 -2298 3848 3787 863 237 12 0 chr1 38097191 38097360 -204566993 + FAM SINE Alu 5 175 0 306 172 35 11 chr1 38097360 38097440 -204566913 + GA-rich Low_complexity Low_complexity 7 91 0 195 42 0 0 chr1 38097440 38097464 -204566889 + (CAAG)n Simple_repeat Simple_repeat 2 25 0 2389 208 21 51 chr1 38097464 38097648 -204566705 + MLT2B3 LTR ERVL 56 244 -310 2697 39 0 3 chr1 38097648 38097960 -204566393 - AluY SINE Alu 0 311 1 2389 208 21 51 chr1 38097960 38098289 -204566064 + MLT2B3 LTR ERVL 244 554 0 1954 192 25 102 chr1 38098290 38098958 -204565395 - L1MB3 LINE L1 -2352 3794 3178 35 41 0 0 chr1 38099050 38099099 -204565254 + AT_rich Low_complexity Low_complexity 1 49 0 2124 101 4 0 chr1 38099215 38099491 -204564862 + AluSx SINE Alu 1 277 -35 1056 101 16 53 chr1 38099608 38099746 -204564607 + L1MB3 LINE L1 6001 6132 -51 2429 48 7 7 chr1 38099746 38100041 -204564312 + AluY SINE Alu 1 295 -16 1056 101 16 53 chr1 38100041 38100091 -204564262 + L1MB3 LINE L1 6132 6182 -1 2324 72 0 78 chr1 38100103 38100437 -204563916 + AluSg SINE Alu 3 310 0 299 240 0 0 chr1 38100443 38100519 -204563834 + L1ME3A LINE L1 6092 6169 -1 846 179 92 123 chr1 38100530 38100830 -204563523 + L1ME LINE L1 5514 5793 -328 1471 107 10 0 chr1 38100831 38101027 -204563326 + AluSq SINE Alu 2 199 -114 1127 153 14 69 chr1 38101415 38101518 -204562835 - LTR47A LTR ERVL 0 452 366 867 183 6 57 chr1 38101518 38101693 -204562660 - FRAM SINE Alu 0 166 1 1127 153 14 69 chr1 38101693 38101805 -204562548 - LTR47A LTR ERVL -86 366 249 1321 152 87 4 chr1 38101961 38102191 -204562162 - LTR47A LTR ERVL -203 249 1 185 189 27 0 chr1 38102337 38102374 -204561979 + MIR SINE MIR 218 255 -7 2128 149 0 110 chr1 38102419 38102751 -204561602 - MLT2D LTR ERVL 0 414 146 2074 125 0 14 chr1 38102751 38103039 -204561314 - AluSx SINE Alu -28 284 1 2128 149 0 110 chr1 38103039 38103170 -204561183 - MLT2D LTR ERVL -268 146 2 1011 165 31 10 chr1 38103310 38103504 -204560849 - AluJb SINE Alu 0 312 115 230 308 87 19 chr1 38103921 38104025 -204560328 + Charlie8 DNA MER1_type 2 112 -2305 1759 156 62 29 chr1 38104025 38104073 -204560280 + L1MB8 LINE L1 5779 5824 -354 2198 95 7 20 chr1 38104073 38104377 -204559976 + AluSc SINE Alu 1 300 -9 1759 156 62 29 chr1 38104377 38104637 -204559716 + L1MB8 LINE L1 5824 6106 -72 2090 136 3 0 chr1 38104637 38104932 -204559421 + AluSx SINE Alu 9 304 -8 1759 156 62 29 chr1 38104932 38105002 -204559351 + L1MB8 LINE L1 6106 6172 -6 2908 116 25 2 chr1 38105016 38105463 -204558890 + L1MB2 LINE L1 5636 6092 -79 198 0 0 0 chr1 38105463 38105485 -204558868 + (T)n Simple_repeat Simple_repeat 1 22 0 265 244 85 0 chr1 38105636 38105718 -204558635 + L2 LINE L2 3225 3313 0 576 149 0 0 chr1 38105899 38105986 -204558367 - AluS SINE Alu -225 88 2 312 315 251 3 chr1 38105987 38106282 -204558071 + L2 LINE L2 2326 2693 -621 495 132 0 0 chr1 38106282 38106376 -204557977 - AluS SINE Alu 0 315 222 419 314 14 88 chr1 38106379 38106576 -204557777 + L2 LINE L2 2702 2871 -443 2563 66 0 0 chr1 38106576 38106878 -204557475 - AluY SINE Alu 0 311 10 419 314 14 88 chr1 38106878 38106976 -204557377 + L2 LINE L2 2871 2975 -339 603 92 0 0 chr1 38107227 38107314 -204557039 - Alu SINE Alu 0 310 224 1087 137 0 0 chr1 38107314 38107460 -204556893 - AluSq/x SINE Alu -166 146 1 276 248 232 8 chr1 38107460 38107585 -204556768 + L2 LINE L2 3161 3313 0 1480 199 0 36 chr1 38107730 38108032 -204556321 + AluJo SINE Alu 1 291 -21 2178 110 0 0 chr1 38108184 38108505 -204555848 - AluSx SINE Alu 0 321 1 700 186 65 0 chr1 38108614 38108738 -204555615 - FLAM_A SINE Alu -1 132 1 365 329 117 30 chr1 38108793 38109379 -204554974 + L2 LINE L2 2594 3225 -47 220 139 0 23 chr1 38110293 38110336 -204554017 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 876 108 0 0 chr1 38110661 38110791 -204553562 + (TA)n Simple_repeat Simple_repeat 1 130 0 311 340 85 16 chr1 38110855 38111161 -204553192 + L1M4 LINE L1 5040 5366 -780 279 133 0 0 chr1 38111285 38111330 -204553023 + (TCTCCC)n Simple_repeat Simple_repeat 4 48 0 189 283 0 0 chr1 38111351 38111397 -204552956 - L2 LINE L2 0 3272 3227 394 247 11 0 chr1 38111598 38111687 -204552666 + MER91B DNA MER1_type 91 180 -10 314 291 170 28 chr1 38111779 38111961 -204552392 - MIR SINE MIR -54 208 1 1958 119 38 10 chr1 38112256 38112549 -204551804 + AluSx SINE Alu 1 301 -11 200 31 62 0 chr1 38112550 38112582 -204551771 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1804 145 10 21 chr1 38112626 38112825 -204551528 + AluJb SINE Alu 1 198 -114 2496 209 162 35 chr1 38112825 38113558 -204550795 - LTR1B LTR ERV1 0 826 1 1804 145 10 21 chr1 38113558 38113647 -204550706 + AluJb SINE Alu 198 286 -26 351 113 0 0 chr1 38113648 38113701 -204550652 + (CA)n Simple_repeat Simple_repeat 2 54 0 2120 142 0 0 chr1 38113819 38114115 -204550238 + AluSx SINE Alu 1 296 -16 259 208 0 0 chr1 38114115 38114163 -204550190 + AluJ/monomer SINE Alu 1 48 -254 1155 153 37 41 chr1 38114267 38114449 -204549904 + LTR2B LTR ERV1 250 432 -58 2646 46 0 3 chr1 38114449 38114752 -204549601 - AluY SINE Alu -8 303 2 1155 153 37 41 chr1 38114752 38114811 -204549542 + LTR2B LTR ERV1 432 490 0 4059 71 36 29 chr1 38114811 38115390 -204548963 + Harlequin LTR ERV1 1 583 -6313 1226 268 85 20 chr1 38116045 38116537 -204547816 - L1MC4a LINE L1 -1892 5916 5393 467 476 42 39 chr1 38116541 38116850 -204547503 + AluJo SINE Alu 3 312 0 1606 156 7 78 chr1 38116884 38117016 -204547337 + AluJo SINE Alu 6 146 -166 1836 128 27 40 chr1 38117016 38117314 -204547039 - AluSg SINE Alu -16 294 1 1606 156 7 78 chr1 38117314 38117489 -204546864 + AluJo SINE Alu 146 291 -21 656 174 33 144 chr1 38117492 38117570 -204546783 + L1ME2 LINE L1 5821 5906 -258 2192 101 0 0 chr1 38117570 38117846 -204546507 + AluSg1 SINE Alu 1 276 -33 249 33 0 0 chr1 38117846 38117876 -204546477 + (CA)n Simple_repeat Simple_repeat 1 30 0 656 174 33 144 chr1 38117876 38118066 -204546287 + L1ME2 LINE L1 5904 6060 -104 1425 136 94 45 chr1 38118069 38118377 -204545976 + MER65A LTR ERV1 1 323 -122 31 0 0 0 chr1 38118668 38118699 -204545654 + AT_rich Low_complexity Low_complexity 1 31 0 826 138 17 0 chr1 38118897 38119013 -204545340 - AluJb SINE Alu -188 124 7 2051 125 0 17 chr1 38119022 38119345 -204545008 - AluSx SINE Alu 0 318 1 2065 145 0 0 chr1 38119494 38119791 -204544562 + AluSx SINE Alu 1 297 -15 1710 163 17 7 chr1 38119959 38120254 -204544099 - AluJb SINE Alu -14 298 1 2024 115 34 3 chr1 38120258 38120553 -204543800 - AluSq SINE Alu -9 304 1 739 75 150 33 chr1 38120872 38120992 -204543361 - AluSq/x SINE Alu -175 137 4 2391 63 7 0 chr1 38121118 38121404 -204542949 - AluY SINE Alu -22 289 2 868 260 109 23 chr1 38121405 38121755 -204542598 - L2 LINE L2 -1171 2143 1764 2059 134 7 16 chr1 38121758 38122065 -204542288 + AluSx SINE Alu 1 304 -8 2093 121 3 23 chr1 38122065 38122369 -204541984 + AluSg SINE Alu 1 299 -11 666 62 0 0 chr1 38122542 38122623 -204541730 - HY3 scRNA scRNA -20 81 1 215 363 38 19 chr1 38122625 38122785 -204541568 - L2 LINE L2 -1767 1547 1385 2319 95 0 3 chr1 38122785 38123081 -204541272 + AluSx SINE Alu 1 295 -17 358 255 48 58 chr1 38123113 38123321 -204541032 - L2 LINE L2 -2416 898 693 2021 118 28 3 chr1 38123322 38123610 -204540743 - AluSc SINE Alu -14 295 1 1050 78 8 0 chr1 38123612 38123741 -204540612 - AluSq/x SINE Alu -181 132 3 531 191 22 96 chr1 38123742 38123878 -204540475 + AluJb SINE Alu 186 311 -1 2283 81 3 19 chr1 38124262 38124569 -204539784 - AluSq SINE Alu -11 302 1 319 202 18 119 chr1 38125177 38125245 -204539108 + MER5A DNA MER1_type 9 64 -125 1730 143 79 4 chr1 38125245 38125525 -204538828 + AluSx SINE Alu 1 301 -11 319 202 18 119 chr1 38125525 38125565 -204538788 + MER5A DNA MER1_type 64 106 -83 280 222 86 0 chr1 38125672 38125753 -204538600 + MIR SINE MIR 175 262 0 1657 86 9 14 chr1 38125988 38126209 -204538144 - AluSg SINE Alu -90 220 1 1071 81 0 7 chr1 38126210 38126346 -204538007 - AluSq/x SINE Alu -178 135 1 228 224 0 0 chr1 38127363 38127461 -204536892 + (CCG)n Simple_repeat Simple_repeat 3 100 0 31 0 0 0 chr1 38127908 38127939 -204536414 + GC_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr1 38128077 38128116 -204536237 + GC_rich Low_complexity Low_complexity 1 39 0 1875 128 22 0 chr1 38129934 38130208 -204534145 - AluSx SINE Alu -32 280 1 2063 131 0 7 chr1 38130216 38130521 -204533832 - AluSq SINE Alu -10 303 1 1945 141 10 13 chr1 38131215 38131513 -204532840 - AluSx SINE Alu -15 297 1 1202 159 198 31 chr1 38131514 38131772 -204532581 - AluJo SINE Alu -1 301 1 2132 118 6 6 chr1 38132426 38132739 -204531614 - AluSq SINE Alu 0 313 1 207 0 0 0 chr1 38133246 38133269 -204531084 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 192 158 0 0 chr1 38135917 38135955 -204528398 + T-rich Low_complexity Low_complexity 1 38 0 2359 72 10 3 chr1 38136671 38136962 -204527391 + AluSg SINE Alu 1 293 -17 224 333 39 0 chr1 38140315 38140393 -204523960 + L2 LINE L2 3098 3178 -94 2358 80 0 29 chr1 38140398 38140712 -204523641 - AluSc SINE Alu -4 305 1 476 209 108 8 chr1 38140877 38141006 -204523347 - FLAM_C SINE Alu 0 143 2 2506 62 0 3 chr1 38141352 38141656 -204522697 + AluY SINE Alu 1 303 -8 1121 216 0 4 chr1 38141901 38142128 -204522225 - AluJo SINE Alu -4 308 83 464 132 15 0 chr1 38142381 38142449 -204521904 - AluSq/x SINE Alu -195 118 50 2028 149 0 0 chr1 38142721 38143009 -204521344 - AluSx SINE Alu -24 288 1 7513 87 39 29 chr1 38143010 38143254 -204521099 - MER4-int LTR ERV1 -128 6470 6230 2229 110 13 0 chr1 38143254 38143553 -204520800 + AluSp SINE Alu 1 303 -10 7513 87 39 29 chr1 38143553 38144245 -204520108 - MER4-int LTR ERV1 -368 6230 5517 2326 92 10 0 chr1 38144245 38144537 -204519816 - AluY SINE Alu -16 295 1 7513 87 39 29 chr1 38144537 38144755 -204519598 - MER4-int LTR ERV1 -1081 5517 5303 886 159 115 0 chr1 38144767 38144924 -204519429 - AluSq SINE Alu -2 311 137 918 78 8 8 chr1 38144927 38145056 -204519297 - MER4-int LTR ERV1 -5477 1121 993 375 135 0 77 chr1 38145054 38145195 -204519158 - MER4-int LTR ERV1 -5712 886 687 * 1901 138 35 73 chr1 38145220 38145810 -204518543 - MER4-int LTR ERV1 -5789 809 98 1230 132 0 37 chr1 38145914 38146103 -204518250 + AluSg/x SINE Alu 114 295 -15 2346 96 0 0 chr1 38146113 38146414 -204517939 + AluSx SINE Alu 1 301 -11 1691 168 36 7 chr1 38146422 38146725 -204517628 - AluJb SINE Alu 0 312 1 200 253 11 126 chr1 38146780 38146828 -204517525 + L2 LINE L2 2265 2301 -1013 2055 44 56 11 chr1 38146828 38147127 -204517226 + AluY SINE Alu 1 311 0 200 253 11 126 chr1 38147127 38147164 -204517189 + L2 LINE L2 2301 2341 -973 228 114 29 0 chr1 38147169 38147204 -204517149 - Alu SINE Alu -85 217 182 2370 85 3 3 chr1 38147383 38147677 -204516676 - AluSp SINE Alu -19 294 1 964 106 43 0 chr1 38147799 38147940 -204516413 - L1PA7 LINE L1 0 6154 6008 2531 50 0 7 chr1 38148136 38148435 -204515918 + AluY SINE Alu 1 297 -14 1277 82 0 0 chr1 38148446 38148604 -204515749 + AluY SINE Alu 150 307 -4 366 200 0 0 chr1 38149079 38149139 -204515214 + U4 snRNA snRNA 1 60 -85 2119 132 0 6 chr1 38149230 38149541 -204514812 + AluSg SINE Alu 1 309 -1 477 161 0 0 chr1 38149826 38149913 -204514440 + (CA)n Simple_repeat Simple_repeat 2 88 0 2188 102 0 0 chr1 38149913 38150198 -204514155 - AluSg SINE Alu -25 285 1 1735 120 0 4 chr1 38150264 38150506 -204513847 - AluSg1 SINE Alu -18 291 51 3035 173 52 83 chr1 38150629 38151435 -204512918 - Charlie1a DNA MER1_type -531 924 144 1139 205 66 4 chr1 38151451 38151695 -204512658 - L1MB5 LINE L1 -8 6166 5908 266 157 0 59 chr1 38151700 38151751 -204512602 - Alu SINE Alu -15 287 240 1547 156 3 25 chr1 38151752 38152035 -204512318 - L1MB5 LINE L1 -277 5897 5621 480 179 186 97 chr1 38152035 38152180 -204512173 - Charlie1a DNA MER1_type -1297 158 1 758 214 0 23 chr1 38152294 38152425 -204511928 + FLAM_A SINE Alu 1 128 -5 22 56 0 0 chr1 38153428 38153464 -204510889 + AT_rich Low_complexity Low_complexity 1 36 0 2397 89 0 16 chr1 38153465 38153780 -204510573 - AluY SINE Alu -1 310 1 1008 184 0 0 chr1 38153783 38153941 -204510412 - AluJo/FRAM SINE Alu -8 294 137 1310 177 40 4 chr1 38153943 38154191 -204510162 - AluJo SINE Alu 0 312 56 1766 148 16 23 chr1 38154348 38154652 -204509701 - AluJo SINE Alu -8 304 3 2485 64 0 13 chr1 38155769 38156083 -204508270 - AluY SINE Alu -1 310 1 1229 189 13 4 chr1 38156572 38156805 -204507548 - Zaphod DNA AcHobo -8 4023 3789 644 233 42 21 chr1 38156797 38156986 -204507367 - Zaphod DNA AcHobo -588 3443 3251 * 904 158 0 7 chr1 38157038 38157184 -204507169 - AluSc SINE Alu -9 300 156 807 231 39 5 chr1 38157185 38157393 -204506960 - Zaphod DNA AcHobo -782 3249 3035 1996 123 3 17 chr1 38157418 38157718 -204506635 - AluSg1 SINE Alu -13 296 1 2132 120 7 10 chr1 38157718 38158027 -204506326 - AluSx SINE Alu -4 308 1 1161 134 0 6 chr1 38158162 38158334 -204506019 - AluSp SINE Alu -14 299 129 1063 195 11 50 chr1 38158616 38158898 -204505455 - AluSx SINE Alu -41 271 1 1962 119 21 3 chr1 38158912 38159265 -204505088 - AluSx SINE Alu 0 375 18 2093 104 10 3 chr1 38159643 38159952 -204504401 - AluSx SINE Alu 0 312 1 33 43 0 0 chr1 38160787 38160834 -204503519 + AT_rich Low_complexity Low_complexity 1 47 0 1889 151 21 7 chr1 38160928 38161219 -204503134 + AluJo SINE Alu 1 295 -17 1825 148 65 0 chr1 38161583 38161874 -204502479 + AluSx SINE Alu 1 310 -2 277 316 86 11 chr1 38161874 38162048 -204502305 + MER117 DNA MER1_type 1 187 -10 25 0 0 0 chr1 38162143 38162168 -204502185 + AT_rich Low_complexity Low_complexity 1 25 0 2323 106 3 0 chr1 38162390 38162693 -204501660 + AluSg SINE Alu 1 304 -6 1259 141 21 5 chr1 38162700 38162891 -204501462 + AluJo SINE Alu 1 194 -118 722 89 20 10 chr1 38162891 38162992 -204501361 - AluSp/q SINE Alu -14 299 198 488 146 11 0 chr1 38163107 38163196 -204501157 + CT-rich Low_complexity Low_complexity 2 91 0 830 186 0 0 chr1 38163208 38163332 -204501021 - AluJb SINE Alu -187 125 2 295 146 73 0 chr1 38163332 38163387 -204500966 - MLT1C-int LTR MaLR -1312 59 1 1550 226 81 34 chr1 38163387 38163833 -204500520 - MLT1C LTR MaLR 0 467 1 27 29 0 0 chr1 38163860 38163894 -204500459 + AT_rich Low_complexity Low_complexity 1 34 0 2289 95 0 0 chr1 38163898 38164194 -204500159 + AluY SINE Alu 1 296 -15 907 174 3 37 chr1 38164235 38164538 -204499815 + L1MA7 LINE L1 5874 6279 -12 220 27 54 0 chr1 38164548 38164585 -204499768 + (TA)n Simple_repeat Simple_repeat 1 39 0 2363 158 93 7 chr1 38164587 38165049 -204499304 - L1MB4 LINE L1 -33 6147 5646 920 206 50 63 chr1 38165053 38165396 -204498957 + MSTB2 LTR MaLR 5 457 0 2165 162 17 127 chr1 38165396 38165451 -204498902 - L1MB4 LINE L1 -530 5650 5591 1774 191 0 0 chr1 38165451 38165755 -204498598 - AluJb SINE Alu -8 304 1 2165 162 17 127 chr1 38165755 38165887 -204498466 - L1MB4 LINE L1 -589 5591 5446 1784 137 0 55 chr1 38165887 38166180 -204498173 - AluSx SINE Alu 0 312 36 2165 162 17 127 chr1 38166180 38166227 -204498126 - L1MB4 LINE L1 -734 5446 5395 2507 71 3 3 chr1 38166227 38166537 -204497816 - AluY SINE Alu -1 310 1 2165 162 17 127 chr1 38166537 38166861 -204497492 - L1MB4 LINE L1 -785 5395 5198 2855 19 0 0 chr1 38166861 38167176 -204497177 - AluYb8 SINE Alu -3 315 1 2165 162 17 127 chr1 38167176 38167496 -204496857 - L1MB4 LINE L1 -982 5198 4844 1399 212 21 75 chr1 38167500 38167887 -204496466 - MLT1A2 LTR MaLR -8 366 1 1741 216 26 16 chr1 38167892 38168322 -204496031 - L1MB4 LINE L1 -1303 4843 4410 * 2131 233 16 31 chr1 38168320 38168375 -204495978 + L1 LINE L1 3843 3897 -2249 1356 143 143 78 chr1 38168375 38168697 -204495656 - MER2 DNA MER2_type 0 344 2 2131 233 16 31 chr1 38168697 38169221 -204495132 + L1 LINE L1 3897 4413 -1733 517 285 17 17 chr1 38169228 38169400 -204494953 - L1MC5 LINE L1 -1095 6866 6695 1465 165 29 70 chr1 38169496 38169811 -204494542 - AluJo SINE Alu -10 302 1 871 124 0 29 chr1 38170100 38170237 -204494116 - FLAM_C SINE Alu -1 142 10 217 0 0 57 chr1 38170464 38170499 -204493854 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2219 97 0 0 chr1 38170505 38170783 -204493570 - AluSg SINE Alu -32 278 1 458 171 24 0 chr1 38170785 38170867 -204493486 - AluJ/FRAM SINE Alu -13 299 216 220 350 142 16 chr1 38170874 38171057 -204493296 + L2 LINE L2 2381 2586 -728 191 320 120 0 chr1 38171838 38171913 -204492440 - L2 LINE L2 0 3272 3189 657 272 141 10 chr1 38172086 38172376 -204491977 - L2 LINE L2 -606 2708 2381 1206 206 14 9 chr1 38172479 38172697 -204491656 - MER20 DNA MER1_type 0 219 1 2015 136 0 0 chr1 38172824 38173145 -204491208 - AluSx SINE Alu 0 323 3 1861 137 24 10 chr1 38173319 38173611 -204490742 - AluJo SINE Alu -16 296 1 702 156 16 8 chr1 38173612 38173740 -204490613 + L1MB8 LINE L1 6045 6173 -5 523 246 18 0 chr1 38173841 38173976 -204490377 - L1ME1 LINE L1 0 6184 6039 331 189 78 22 chr1 38173976 38174066 -204490287 - L1ME1 LINE L1 -484 5682 5598 * 470 152 71 0 chr1 38174061 38174160 -204490193 - L1ME1 LINE L1 -842 5304 5199 391 196 0 72 chr1 38174163 38174260 -204490093 - FLAM_A SINE Alu -2 131 42 538 136 19 10 chr1 38174260 38174363 -204489990 - L1ME1 LINE L1 -951 5195 5092 2215 107 17 7 chr1 38174514 38174814 -204489539 - AluSq SINE Alu -10 303 1 1894 165 0 13 chr1 38175059 38175368 -204488985 - 7SLRNA srpRNA srpRNA -5 315 11 2090 120 0 7 chr1 38175387 38175678 -204488675 - AluSx SINE Alu -22 290 2 1834 172 0 14 chr1 38175884 38176180 -204488173 - AluJo SINE Alu -15 297 6 2093 123 0 10 chr1 38176195 38176497 -204487856 - AluSx SINE Alu -13 299 1 2136 86 57 0 chr1 38176750 38177030 -204487323 + AluY SINE Alu 1 296 -15 240 277 42 34 chr1 38177163 38177282 -204487071 + L1M4 LINE L1 4497 4616 -1530 1179 284 90 35 chr1 38177877 38178356 -204485997 - L2 LINE L2 -5 3308 2804 877 180 73 22 chr1 38178361 38178539 -204485814 - MER20 DNA MER1_type -30 189 3 1233 274 75 22 chr1 38178547 38179054 -204485299 - HERVL LTR ERVL -3111 1885 1347 364 291 72 64 chr1 38179348 38179613 -204484740 - HERVL LTR ERVL -4731 1033 767 269 304 0 0 chr1 38179625 38179704 -204484649 - HERVL LTR ERVL -5036 618 540 2376 102 0 3 chr1 38179721 38180035 -204484318 - AluSq SINE Alu 0 313 1 236 109 0 22 chr1 38180047 38180093 -204484260 - Alu SINE Alu 0 302 258 287 303 50 0 chr1 38180093 38180192 -204484161 - HERVL LTR ERVL -5197 567 464 627 154 185 99 chr1 38180219 38180381 -204483972 + AluJb SINE Alu 124 299 -13 806 166 43 111 chr1 38180779 38181032 -204483321 - LTR41 LTR ERVL -17 756 521 1026 189 5 25 chr1 38181111 38181307 -204483046 + AluJb SINE Alu 99 290 -22 874 194 26 11 chr1 38181546 38181744 -204482609 - LTR41 LTR ERVL -564 231 5 4347 240 64 66 chr1 38181749 38181922 -204482431 - L1MEc LINE L1 -4588 1808 1636 840 212 0 0 chr1 38181922 38182054 -204482299 - FLAM_A SINE Alu 0 133 2 4347 240 64 66 chr1 38182054 38182158 -204482195 - L1MEc LINE L1 -4760 1636 1533 3763 106 30 126 chr1 38182158 38182673 -204481680 - MER51A LTR ERV1 0 634 202 2301 97 0 3 chr1 38182673 38182982 -204481371 - AluY SINE Alu -2 309 2 3763 106 30 126 chr1 38182982 38183167 -204481186 - MER51A LTR ERV1 -432 202 1 4347 240 64 66 chr1 38183167 38184153 -204480200 - L1MEc LINE L1 -4863 1533 547 2134 131 3 0 chr1 38184153 38184451 -204479902 + AluSx SINE Alu 1 299 -13 4347 240 64 66 chr1 38184451 38184966 -204479387 - L1MEc LINE L1 -5849 547 32 365 257 9 106 chr1 38185003 38185089 -204479264 + MER58 DNA MER1_type 1 75 -140 1725 152 9 35 chr1 38185089 38185267 -204479086 - AluJb SINE Alu -5 307 139 2443 88 0 0 chr1 38185267 38185573 -204478780 - AluY SINE Alu -5 306 1 1725 152 9 35 chr1 38185573 38185709 -204478644 - AluJb SINE Alu -173 139 1 365 257 9 106 chr1 38185709 38185735 -204478618 + MER58 DNA MER1_type 75 102 -113 906 217 0 0 chr1 38185963 38186115 -204478238 - FRAM SINE Alu -14 152 1 1438 102 0 39 chr1 38186136 38186342 -204478011 - AluSc SINE Alu -111 198 1 1684 73 0 0 chr1 38186595 38186815 -204477538 - HERVH LTR ERV1 -7493 220 1 2965 87 92 5 chr1 38186817 38187229 -204477124 - LTR7 LTR ERV1 -2 448 1 24682 57 15 13 chr1 38187229 38190031 -204474322 - HERVH LTR ERV1 -1457 5439 2629 2511 84 3 0 chr1 38190031 38190341 -204474012 + AluSp SINE Alu 1 311 -2 24682 57 15 13 chr1 38190341 38190630 -204473723 - HERVH LTR ERV1 -4267 2629 2342 412 70 91 7 chr1 38193212 38193355 -204470998 + (TA)n Simple_repeat Simple_repeat 2 156 0 2251 113 0 0 chr1 38193364 38193666 -204470687 + AluSx SINE Alu 1 302 -10 203 328 0 30 chr1 38194771 38194838 -204469515 - L2 LINE L2 -17 3255 3191 2153 125 0 10 chr1 38194888 38195193 -204469160 - AluSx SINE Alu -10 302 1 26 50 0 0 chr1 38195322 38195362 -204468991 + AT_rich Low_complexity Low_complexity 1 40 0 2260 113 0 3 chr1 38195794 38196095 -204468258 + AluSq SINE Alu 1 300 -13 1679 148 13 46 chr1 38196517 38196822 -204467531 + AluJb SINE Alu 6 300 -12 1740 161 10 23 chr1 38196832 38197142 -204467211 + AluJb SINE Alu 1 306 -6 2242 108 3 7 chr1 38197190 38197496 -204466857 + AluSx SINE Alu 1 305 -7 30 0 0 0 chr1 38197695 38197725 -204466628 + AT_rich Low_complexity Low_complexity 1 30 0 1597 85 0 9 chr1 38197825 38198036 -204466317 + AluSg/x SINE Alu 91 299 -13 1018 116 236 112 chr1 38198199 38198449 -204465904 - MER4A LTR ERV1 -123 541 261 616 113 21 10 chr1 38198449 38198546 -204465807 - MER4A LTR ERV1 -566 98 1 655 169 157 0 chr1 38198770 38198948 -204465405 - L1MB4 LINE L1 -32 6148 5943 2071 181 100 31 chr1 38198950 38199408 -204464945 - LTR2B LTR ERV1 0 490 1 4439 58 0 6 chr1 38199408 38199957 -204464396 - Harlequin LTR ERV1 0 6896 6351 332 47 23 0 chr1 38199957 38200000 -204464353 + LTR7 LTR ERV1 1 44 -406 1962 135 59 3 chr1 38200004 38200344 -204464009 - HERVH LTR ERV1 -33 7680 7322 1375 139 19 0 chr1 38200342 38200558 -204463795 - HERVH LTR ERV1 -1894 5819 5600 * 8558 101 2 10 chr1 38200559 38202647 -204461706 - HERVH LTR ERV1 -2564 5149 3140 * 15442 114 2 10 chr1 38202626 38204923 -204459430 - HERVH LTR ERV1 -4718 2995 718 2040 126 0 3 chr1 38205360 38205661 -204458692 - AluSx SINE Alu -11 301 2 1177 174 4 21 chr1 38205875 38206116 -204458237 - AluSx SINE Alu -75 237 1 922 86 0 0 chr1 38206521 38206637 -204457716 + AluSg SINE Alu 1 116 -194 1439 118 0 42 chr1 38206637 38206875 -204457478 + AluY SINE Alu 68 295 -16 1923 132 7 7 chr1 38206995 38207298 -204457055 - AluSq SINE Alu -10 303 1 2018 117 3 3 chr1 38207335 38207633 -204456720 + AluSp SINE Alu 1 298 -15 2142 102 10 10 chr1 38207635 38207940 -204456413 + AluSq SINE Alu 1 305 -8 1918 66 74 0 chr1 38208119 38208390 -204455963 + AluY SINE Alu 1 291 -20 568 249 228 5 chr1 38208518 38208711 -204455642 - MIR SINE MIR -24 238 3 1965 132 7 7 chr1 38208785 38209081 -204455272 + AluSx SINE Alu 1 296 -16 1837 119 7 26 chr1 38209392 38209695 -204454658 + AluSx SINE Alu 3 299 -13 1243 153 15 0 chr1 38210184 38210386 -204453967 + AluJo SINE Alu 88 292 -20 2249 55 0 7 chr1 38210942 38211258 -204453095 + AluY SINE Alu 1 314 0 1857 143 79 16 chr1 38212161 38212476 -204451877 - MER6 DNA MER2_type -530 335 1 1790 113 10 20 chr1 38212789 38213081 -204451272 + AluSx SINE Alu 3 291 -21 388 220 73 0 chr1 38213219 38213328 -204451025 - L1MEc LINE L1 -3574 2641 2525 2187 95 3 13 chr1 38213352 38213657 -204450696 - AluSx SINE Alu -10 302 1 1355 206 22 0 chr1 38213673 38213949 -204450404 - AluJb SINE Alu -26 286 5 665 184 14 106 chr1 38213998 38214132 -204450221 - L1MEc LINE L1 -4013 2383 2238 1695 168 3 17 chr1 38214132 38214429 -204449924 + AluJb SINE Alu 1 293 -19 665 184 14 106 chr1 38214429 38214466 -204449887 - L1MEc LINE L1 -4158 2238 2233 1567 134 100 7 chr1 38214466 38214735 -204449618 - AluSq SINE Alu -19 294 1 665 184 14 106 chr1 38214735 38214779 -204449574 - L1MEc LINE L1 -4163 2233 2187 2187 91 0 10 chr1 38214879 38215175 -204449178 - AluSg SINE Alu -17 293 1 659 249 28 61 chr1 38215175 38215388 -204448965 - LTR2 LTR ERV1 -243 206 1 225 250 0 0 chr1 38215390 38215442 -204448911 - L1MB4 LINE L1 -239 5941 5890 1552 107 9 0 chr1 38215460 38215684 -204448669 - AluSg SINE Alu -84 226 1 264 30 0 0 chr1 38215689 38215722 -204448631 + (TA)n Simple_repeat Simple_repeat 2 34 0 1730 88 4 66 chr1 38215762 38216034 -204448319 - AluSq SINE Alu -48 265 11 1931 118 14 7 chr1 38216049 38216346 -204448007 - AluSc SINE Alu -10 299 1 963 167 71 5 chr1 38216348 38216558 -204447795 - L1MB4 LINE L1 -272 5908 5685 * 1642 263 57 9 chr1 38216549 38216717 -204447636 - L1MEc LINE L1 -5450 946 787 1914 140 3 7 chr1 38216717 38217010 -204447343 - AluSx SINE Alu -20 292 1 1642 263 57 9 chr1 38217010 38217370 -204446983 - L1MEc LINE L1 -5609 787 393 479 284 52 86 chr1 38217407 38217484 -204446869 + MER34 LTR ERV1 1 79 -463 1654 147 38 3 chr1 38217484 38217777 -204446576 + AluSx SINE Alu 1 303 -9 479 284 52 86 chr1 38217777 38218099 -204446254 + MER34 LTR ERV1 79 347 -195 2028 112 7 0 chr1 38218099 38218394 -204445959 + AluSx SINE Alu 1 297 -15 479 284 52 86 chr1 38218394 38218550 -204445803 + MER34 LTR ERV1 347 507 -35 1025 220 37 15 chr1 38218597 38218865 -204445488 + L1MCa LINE L1 57 330 -6096 791 158 0 15 chr1 38218872 38219005 -204445348 + FLAM_C SINE Alu 2 132 -11 989 139 0 0 chr1 38219025 38219169 -204445184 + AluSq/x SINE Alu 3 146 -167 2025 84 0 34 chr1 38219169 38219465 -204444888 + AluY SINE Alu 1 286 -25 22 0 0 0 chr1 38219474 38219496 -204444857 + AT_rich Low_complexity Low_complexity 1 22 0 1208 190 15 94 chr1 38219496 38219827 -204444526 + AluJo SINE Alu 1 305 -7 246 175 32 0 chr1 38219829 38219892 -204444461 + L1MA10 LINE L1 6262 6326 -8 784 292 87 37 chr1 38220075 38220397 -204443956 - LTR16C LTR ERVL -2 489 152 252 349 36 0 chr1 38220554 38220637 -204443716 + MIR SINE MIR 13 98 -164 2275 85 7 0 chr1 38220638 38220944 -204443409 - AluSx SINE Alu -4 308 1 220 313 0 0 chr1 38220949 38221013 -204443340 + MIR SINE MIR 182 245 -17 250 275 0 14 chr1 38221053 38221122 -204443231 + MARNA DNA Mariner 342 409 -177 2113 103 0 7 chr1 38221283 38221584 -204442769 + AluSx SINE Alu 1 299 -13 2059 98 13 25 chr1 38221813 38222130 -204442223 + AluSq SINE Alu 1 313 0 3819 61 9 11 chr1 38222131 38222673 -204441680 + Harlequin LTR ERV1 1809 2349 -4547 1672 203 73 48 chr1 38222737 38223136 -204441217 + LTR2 LTR ERV1 41 449 0 3156 145 4 119 chr1 38223136 38223824 -204440529 + HERVE LTR ERV1 1 609 -7204 3976 184 54 36 chr1 38223843 38224945 -204439408 + HERVE LTR ERV1 732 4331 -3482 1826 224 58 6 chr1 38224945 38225293 -204439060 + HERV3 LTR ERV1 1722 2087 -6339 1663 278 39 2 chr1 38225418 38225824 -204438529 + HERV3 LTR ERV1 2049 2469 -5957 496 215 67 22 chr1 38225810 38225945 -204438408 + HERV3 LTR ERV1 3684 3824 -4602 * 5443 196 22 6 chr1 38225935 38227020 -204437333 + HERV3 LTR ERV1 5148 6313 -2113 1900 218 29 15 chr1 38227076 38227785 -204436568 + HERV3 LTR ERV1 7012 7811 -2 937 208 66 73 chr1 38227860 38228148 -204436205 + LTR2 LTR ERV1 44 329 -120 26 0 0 0 chr1 38229947 38229973 -204434380 + AT_rich Low_complexity Low_complexity 1 26 0 1026 164 89 14 chr1 38231222 38231436 -204432917 + AluJb SINE Alu 1 230 -82 2008 119 3 0 chr1 38231629 38231924 -204432429 - AluSq SINE Alu -17 296 1 2137 69 7 23 chr1 38231967 38232270 -204432083 - AluY SINE Alu -13 298 1 389 169 0 90 chr1 38233060 38233149 -204431204 + Tigger7 DNA MER2_type 2407 2487 0 329 167 56 56 chr1 38233391 38233463 -204430890 - AluSg/x SINE Alu -14 288 217 818 73 0 9 chr1 38233464 38233574 -204430779 - AluSq/x SINE Alu -203 109 1 1938 100 31 3 chr1 38233853 38234144 -204430209 - AluY SINE Alu -12 299 1 193 241 383 12 chr1 38234363 38234525 -204429828 + MIR SINE MIR 3 224 -38 3353 180 103 35 chr1 38235023 38235591 -204428762 + L1MB7 LINE L1 4477 5005 -1179 1629 171 42 0 chr1 38235591 38235877 -204428476 + AluJo SINE Alu 1 298 -14 3353 180 103 35 chr1 38235877 38235910 -204428443 + L1MB7 LINE L1 5005 5034 -1150 1643 111 87 4 chr1 38235910 38236162 -204428191 + AluSx SINE Alu 16 288 -24 3353 180 103 35 chr1 38236162 38236291 -204428062 + L1MB7 LINE L1 5034 5153 -1031 1819 128 25 0 chr1 38236291 38236565 -204427788 + AluSx SINE Alu 1 281 -31 3353 180 103 35 chr1 38236565 38236781 -204427572 + L1MB7 LINE L1 5153 5353 -831 1250 177 130 16 chr1 38236781 38237035 -204427318 + AluJb SINE Alu 2 284 -28 3353 180 103 35 chr1 38237035 38237371 -204426982 + L1MB7 LINE L1 5353 5665 -519 1933 124 31 0 chr1 38237371 38237661 -204426692 + AluSx SINE Alu 1 299 -13 3353 180 103 35 chr1 38237661 38237784 -204426569 + L1MB7 LINE L1 5665 6184 0 248 211 55 83 chr1 38237790 38237812 -204426541 - L2 LINE L2 -460 2854 2833 2139 105 3 7 chr1 38237812 38238108 -204426245 + AluSx SINE Alu 1 295 -17 248 211 55 83 chr1 38238108 38238194 -204426159 - L2 LINE L2 -481 2833 2749 196 271 129 29 chr1 38238205 38238275 -204426078 + L2 LINE L2 2604 2680 -634 369 180 114 32 chr1 38238285 38238494 -204425859 - MLT1H LTR MaLR -4 545 301 1913 132 10 3 chr1 38239050 38239346 -204425007 - AluJb SINE Alu -14 298 1 2298 97 0 0 chr1 38239347 38239655 -204424698 - AluSx SINE Alu -4 308 1 1668 117 63 10 chr1 38239800 38240100 -204424253 - L1MA8 LINE L1 -12 6279 5964 1184 162 10 0 chr1 38240214 38240411 -204423942 - L1MA8 LINE L1 -367 5924 5726 2058 108 3 0 chr1 38240611 38240898 -204423455 - AluSg SINE Alu -22 288 1 3355 138 0 100 chr1 38241136 38241377 -204422976 - L1MA7 LINE L1 -32 6259 5989 1983 115 0 63 chr1 38241377 38241708 -204422645 + AluSx SINE Alu 1 310 -2 3355 138 0 100 chr1 38241708 38241930 -204422423 - L1MA7 LINE L1 -302 5989 5740 1886 140 3 40 chr1 38241930 38242115 -204422238 - AluSx SINE Alu -2 310 141 2267 70 0 13 chr1 38242115 38242414 -204421939 - AluY SINE Alu -16 295 1 1886 140 3 40 chr1 38242414 38242550 -204421803 - AluSx SINE Alu -171 141 1 1949 137 3 3 chr1 38242554 38242854 -204421499 - AluSx SINE Alu -12 300 1 2281 100 0 3 chr1 38242859 38243170 -204421183 - AluY SINE Alu -1 310 1 3355 138 0 100 chr1 38243170 38243435 -204420918 - L1MA7 LINE L1 -558 5733 5473 1921 109 36 0 chr1 38243435 38243710 -204420643 - AluSc SINE Alu -8 301 17 3355 138 0 100 chr1 38243710 38243827 -204420526 - L1MA7 LINE L1 -818 5473 5343 603 214 0 0 chr1 38243820 38243937 -204420416 + L1 LINE L1 3801 3917 -2229 * 1565 173 10 26 chr1 38243967 38244280 -204420073 - AluSx SINE Alu -4 308 1 46 0 0 0 chr1 38244299 38244345 -204420008 + AT_rich Low_complexity Low_complexity 1 46 0 1029 77 0 53 chr1 38244345 38244515 -204419838 - L1PB2 LINE L1 -3 6148 5988 252 59 0 0 chr1 38244572 38244606 -204419747 + (CA)n Simple_repeat Simple_repeat 1 34 0 402 187 9 84 chr1 38244653 38244760 -204419593 - AluJo SINE Alu -95 217 119 2094 124 0 0 chr1 38244793 38245099 -204419254 - AluSq SINE Alu -7 306 1 51 65 0 0 chr1 38245099 38245192 -204419161 + AT_rich Low_complexity Low_complexity 1 93 0 2113 125 0 0 chr1 38245240 38245545 -204418808 - AluSx SINE Alu -7 305 1 556 312 148 65 chr1 38245557 38246069 -204418284 - L1MEc LINE L1 -5516 880 303 2021 123 10 10 chr1 38246069 38246371 -204417982 + AluSx SINE Alu 1 302 -10 556 312 148 65 chr1 38246371 38246493 -204417860 - L1MEc LINE L1 -6093 303 193 1726 177 30 71 chr1 38246579 38246915 -204417438 + MLT1B LTR MaLR 1 350 -40 2346 75 3 7 chr1 38246915 38247220 -204417133 - AluSq SINE Alu -9 304 1 2248 68 0 0 chr1 38247223 38247538 -204416815 - AluY SINE Alu 0 315 1 1726 177 30 71 chr1 38247538 38247603 -204416750 + MLT1B LTR MaLR 352 390 0 251 301 10 10 chr1 38247605 38247708 -204416645 - L1MEc LINE L1 -6255 141 39 431 189 25 33 chr1 38247810 38247932 -204416421 - L1MA10 LINE L1 -7 6327 6207 644 178 0 8 chr1 38247935 38248053 -204416300 - MER65A LTR ERV1 -20 425 309 1668 142 16 0 chr1 38248053 38248307 -204416046 + AluSx SINE Alu 1 258 -54 1979 136 27 0 chr1 38298519 38298820 -204365533 + AluSx SINE Alu 1 309 -3 2236 89 0 7 chr1 38300500 38300793 -204363560 + AluSq SINE Alu 1 291 -22 562 235 71 18 chr1 38300824 38300994 -204363359 + MER58C DNA MER1_type 32 210 -5 2224 130 0 0 chr1 38301126 38301433 -204362920 - AluSx SINE Alu 0 312 6 2240 170 40 7 chr1 38301572 38302025 -204362328 + L1MB2 LINE L1 5700 6167 -4 1614 172 28 7 chr1 38302060 38302350 -204362003 + AluSq SINE Alu 1 296 -17 329 216 57 0 chr1 38302371 38302459 -204361894 + L1ME LINE L1 3270 3362 -2784 234 200 33 17 chr1 38302549 38302609 -204361744 - MER3 DNA MER1_type -1 208 148 * 269 108 0 0 chr1 38302608 38302645 -204361708 - U2 snRNA snRNA -151 37 1 440 198 83 25 chr1 38302645 38302766 -204361587 - MER3 DNA MER1_type -60 149 22 1536 254 52 31 chr1 38302780 38303453 -204360900 + L1ME LINE L1 3394 4136 -2010 1958 132 0 0 chr1 38303453 38303726 -204360627 + AluSx SINE Alu 1 273 -39 1217 201 77 98 chr1 38303837 38304280 -204360073 + L1ME LINE L1 4738 5189 -975 204 97 0 0 chr1 38304280 38304311 -204360042 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 1217 201 77 98 chr1 38304311 38304444 -204359909 + L1ME LINE L1 5189 5323 -841 1634 152 0 40 chr1 38304444 38304742 -204359611 + AluJb SINE Alu 16 302 0 1217 201 77 98 chr1 38304742 38304938 -204359415 + L1ME LINE L1 5323 5483 -681 1423 160 25 25 chr1 38304973 38305248 -204359105 + AluJo SINE Alu 24 298 -14 526 251 18 27 chr1 38305248 38305467 -204358886 + L1M4 LINE L1 3390 3606 -2540 23 0 0 0 chr1 38305886 38305909 -204358444 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr1 38306261 38306286 -204358067 + (CA)n Simple_repeat Simple_repeat 2 26 0 2078 285 112 48 chr1 38306335 38307449 -204356904 + L2 LINE L2 1752 2936 -378 1799 172 19 13 chr1 38307728 38308036 -204356317 + AluJb SINE Alu 1 310 -2 700 258 152 40 chr1 38308091 38308305 -204356048 - L1MC4a LINE L1 -1926 5882 5619 2406 93 0 3 chr1 38308305 38308618 -204355735 + AluSx SINE Alu 1 312 0 700 258 152 40 chr1 38308618 38308725 -204355628 - L1MC4a LINE L1 -2189 5619 5525 476 145 0 13 chr1 38308728 38308804 -204355549 - MER58A DNA MER1_type 0 224 150 2220 77 6 49 chr1 38308882 38309207 -204355146 - AluY SINE Alu 0 311 1 1603 174 67 0 chr1 38309806 38310076 -204354277 + AluSx SINE Alu 1 288 -24 302 279 54 48 chr1 38310294 38310441 -204353912 - L1MC4 LINE L1 -803 7239 7092 418 342 0 9 chr1 38310509 38310623 -204353730 + L2 LINE L2 3160 3272 0 193 324 14 14 chr1 38310634 38310705 -204353648 - L2 LINE L2 -557 2757 2687 1681 158 10 48 chr1 38310757 38311048 -204353305 - AluJo SINE Alu -30 282 3 231 227 187 0 chr1 38311073 38311148 -204353205 - MLT1K LTR MaLR 0 588 500 192 323 48 0 chr1 38312236 38312298 -204352055 + MIR3 SINE MIR 8 72 -136 254 323 126 36 chr1 38312315 38312538 -204351815 - MIR SINE MIR 0 262 20 36 23 0 0 chr1 38313687 38313730 -204350623 + AT_rich Low_complexity Low_complexity 1 43 0 228 387 99 7 chr1 38314094 38314236 -204350117 + L2 LINE L2 3102 3256 -16 28 0 0 0 chr1 38314795 38314823 -204349530 + AT_rich Low_complexity Low_complexity 1 28 0 1597 157 42 54 chr1 38316551 38316749 -204347604 - AluJb SINE Alu -1 311 117 1809 139 7 4 chr1 38316749 38317023 -204347330 + AluSx SINE Alu 1 275 -37 1597 157 42 54 chr1 38317023 38317137 -204347216 - AluJb SINE Alu -195 117 3 865 175 19 25 chr1 38317169 38317329 -204347024 - MER20 DNA MER1_type 0 219 61 230 354 37 43 chr1 38318919 38319083 -204345270 - MIR SINE MIR -42 220 58 216 0 0 0 chr1 38319096 38319120 -204345233 + (T)n Simple_repeat Simple_repeat 1 24 0 2052 122 0 39 chr1 38320586 38320898 -204343455 + AluSq SINE Alu 1 300 -13 2083 110 0 36 chr1 38321077 38321385 -204342968 - AluSp SINE Alu -16 297 1 2020 111 39 0 chr1 38321555 38321834 -204342519 + AluSx SINE Alu 5 294 -18 1043 163 8 119 chr1 38321878 38322130 -204342223 + MER58A DNA MER1_type 1 224 0 440 275 59 45 chr1 38322424 38322646 -204341707 + L1ME4a LINE L1 5523 5747 -374 1143 152 33 5 chr1 38322683 38322893 -204341460 - MER96B DNA MER1_type? -201 216 1 424 254 139 24 chr1 38323297 38323584 -204340769 + L1ME4a LINE L1 5791 6110 -11 31 58 0 0 chr1 38323594 38323646 -204340707 + AT_rich Low_complexity Low_complexity 1 52 0 207 196 0 0 chr1 38323831 38323877 -204340476 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 279 93 0 0 chr1 38324181 38324224 -204340129 + (T)n Simple_repeat Simple_repeat 1 43 0 216 0 0 0 chr1 38324584 38324608 -204339745 + (T)n Simple_repeat Simple_repeat 1 24 0 405 0 0 0 chr1 38324921 38324966 -204339387 + (TG)n Simple_repeat Simple_repeat 1 45 0 2246 75 0 3 chr1 38324971 38325274 -204339079 - AluY SINE Alu 0 302 1 497 319 57 27 chr1 38325844 38326179 -204338174 - MARNA DNA Mariner -156 430 86 780 162 108 3 chr1 38326230 38326458 -204337895 + L1MA8 LINE L1 5989 6223 -68 1281 145 39 30 chr1 38326479 38326713 -204337640 - MER46A DNA MER2_type 0 236 1 1993 149 0 3 chr1 38326734 38327035 -204337318 + AluSx SINE Alu 1 300 -12 234 105 0 0 chr1 38327075 38327113 -204337240 + (TA)n Simple_repeat Simple_repeat 1 38 0 2089 86 0 64 chr1 38327280 38327606 -204336747 - AluY SINE Alu -6 305 1 1078 113 0 0 chr1 38327608 38327750 -204336603 - AluY SINE Alu -169 142 1 2516 73 0 10 chr1 38327933 38328246 -204336107 - AluSp SINE Alu -2 311 2 726 155 0 9 chr1 38328432 38328548 -204335805 + FLAM_A SINE Alu 1 115 -18 1768 195 0 0 chr1 38329706 38330004 -204334349 + AluJo SINE Alu 1 298 -14 2309 84 0 14 chr1 38330442 38330738 -204333615 - AluSc SINE Alu -17 292 1 2320 90 0 0 chr1 38330831 38331119 -204333234 - AluSx SINE Alu -24 288 1 11290 132 89 73 chr1 38331391 38333005 -204331348 - Tigger1 DNA MER2_type -1 2417 830 2103 122 0 3 chr1 38333005 38333309 -204331044 - AluSc SINE Alu -6 303 1 932 102 0 7 chr1 38333309 38333446 -204330907 - AluSq/x SINE Alu -176 136 1 11290 132 89 73 chr1 38333446 38334051 -204330302 - Tigger1 DNA MER2_type -1587 831 24 2221 82 4 0 chr1 38334209 38334533 -204329820 - AluY SINE Alu 0 325 1 344 225 78 8 chr1 38334793 38334922 -204329431 - L1ME4a LINE L1 -15 6106 5969 237 292 56 0 chr1 38334931 38335003 -204329350 - MIR SINE MIR -76 186 111 2299 110 0 10 chr1 38335770 38336079 -204328274 + AluSx SINE Alu 1 306 -6 990 209 67 0 chr1 38336113 38336323 -204328030 + MER58A DNA MER1_type 1 224 0 683 182 92 152 chr1 38336324 38336422 -204327931 + LTR37B LTR ERV1 114 216 -252 589 35 12 12 chr1 38336422 38336507 -204327846 + (TA)n Simple_repeat Simple_repeat 1 85 0 683 182 92 152 chr1 38336507 38336547 -204327806 + LTR37B LTR ERV1 216 257 -211 1663 201 7 7 chr1 38336547 38336851 -204327502 + AluJo SINE Alu 1 304 -8 683 182 92 152 chr1 38336851 38337080 -204327273 + LTR37B LTR ERV1 257 460 -8 388 293 94 33 chr1 38337131 38337312 -204327041 - L3 LINE CR1 -3 1574 1383 185 321 54 0 chr1 38337521 38337577 -204326776 - L2 LINE L2 -10 3262 3204 5548 179 16 37 chr1 38337600 38338243 -204326110 + L1P LINE L1 2154 2760 -3386 2262 113 3 0 chr1 38338243 38338544 -204325809 + AluSq SINE Alu 1 302 -11 5548 179 16 37 chr1 38338544 38339172 -204325181 + L1P LINE L1 2760 3399 -2747 608 257 129 7 chr1 38339436 38339553 -204324800 + MER58B DNA MER1_type 27 128 -2292 1933 132 7 20 chr1 38339553 38339857 -204324496 + AluJb SINE Alu 1 300 -12 608 257 129 7 chr1 38339857 38340019 -204324334 + MER58B DNA MER1_type 128 340 -1 279 239 109 33 chr1 38340719 38340811 -204323542 - MER5B DNA MER1_type -78 100 2 303 28 0 0 chr1 38341647 38341683 -204322670 + (CA)n Simple_repeat Simple_repeat 2 37 0 420 158 0 0 chr1 38341684 38341760 -204322593 + (TA)n Simple_repeat Simple_repeat 1 76 0 2007 102 27 20 chr1 38341925 38342218 -204322135 - AluSx SINE Alu -17 295 1 336 21 0 0 chr1 38342714 38342761 -204321592 - L1MA3 LINE L1 0 6305 6259 24 0 0 0 chr1 38342766 38342790 -204321563 + AT_rich Low_complexity Low_complexity 1 24 0 324 339 21 24 chr1 38343245 38343477 -204320876 + MIR SINE MIR 12 243 -19 520 259 14 97 chr1 38344220 38344299 -204320054 - MER112 DNA MER1_type -5 255 171 1981 121 9 19 chr1 38344299 38344614 -204319739 - AluSx SINE Alu 0 312 1 520 259 14 97 chr1 38344614 38344812 -204319541 - MER112 DNA MER1_type -89 171 1 1911 133 149 8 chr1 38345706 38346081 -204318272 - MSTA LTR MaLR 0 428 1 323 289 62 0 chr1 38346330 38346427 -204317926 + L2 LINE L2 3199 3301 -12 364 165 68 29 chr1 38347584 38347666 -204316687 + MER112 DNA MER1_type 5 93 -167 2352 104 0 0 chr1 38347666 38347975 -204316378 - AluSx SINE Alu -3 309 1 364 165 68 29 chr1 38347975 38347995 -204316358 + MER112 DNA MER1_type 93 111 -149 196 30 61 0 chr1 38348048 38348081 -204316272 + A-rich Low_complexity Low_complexity 3 37 0 832 112 15 22 chr1 38348172 38348306 -204316047 - FLAM_C SINE Alu 0 133 1 27 62 0 0 chr1 38348772 38348820 -204315533 + AT_rich Low_complexity Low_complexity 1 48 0 2485 64 0 3 chr1 38348943 38349240 -204315113 + AluY SINE Alu 1 296 -15 243 0 0 0 chr1 38349252 38349279 -204315074 + (TG)n Simple_repeat Simple_repeat 2 28 0 2511 79 127 5 chr1 38349742 38350135 -204314218 - LTR7 LTR ERV1 -9 441 1 608 259 0 18 chr1 38350356 38350526 -204313827 + FRAM SINE Alu 1 167 -9 1656 139 170 16 chr1 38350531 38350854 -204313499 - MER83B LTR ERV1 0 378 6 2267 100 3 3 chr1 38351235 38351536 -204312817 + AluSg SINE Alu 5 305 -5 21 36 0 0 chr1 38352987 38353015 -204311338 + AT_rich Low_complexity Low_complexity 1 28 0 271 359 53 0 chr1 38353275 38353406 -204310947 - MIR SINE MIR -17 245 108 3344 195 95 54 chr1 38353525 38354290 -204310063 - L1M4b LINE L1 -6052 807 11 871 112 16 8 chr1 38354301 38354426 -204309927 + FLAM_C SINE Alu 1 126 -17 350 239 0 0 chr1 38354567 38354638 -204309715 - MER5A DNA MER1_type -104 85 15 808 161 0 8 chr1 38354784 38354914 -204309439 + FLAM_C SINE Alu 1 129 -4 1407 172 192 13 chr1 38355054 38355362 -204308991 - MER47A DNA MER2_type -3 363 1 526 293 67 29 chr1 38357443 38357682 -204306671 - MIR SINE MIR 0 262 15 1866 92 4 8 chr1 38359364 38359668 -204304685 + AluY SINE Alu 33 335 0 3920 146 34 9 chr1 38359675 38359835 -204304518 + L1MB5 LINE L1 5172 5327 -847 1412 140 184 82 chr1 38359835 38360164 -204304189 + MSTB1 LTR MaLR 1 378 -54 2482 81 0 0 chr1 38360164 38360461 -204303892 - AluSg SINE Alu -13 297 1 1412 140 184 82 chr1 38360461 38360523 -204303830 + MSTB1 LTR MaLR 378 432 0 3920 146 34 9 chr1 38360523 38361178 -204303175 + L1MB5 LINE L1 5327 5996 -178 288 0 0 0 chr1 38361346 38361378 -204302975 + (TG)n Simple_repeat Simple_repeat 2 33 0 313 252 197 37 chr1 38361627 38361845 -204302508 - L1M4 LINE L1 -2922 3224 2972 1621 247 170 9 chr1 38362187 38362729 -204301624 - L1MC4 LINE L1 -953 7089 6461 2185 110 0 10 chr1 38363143 38363443 -204300910 - AluSg SINE Alu -13 297 1 619 53 0 0 chr1 38363451 38363526 -204300827 - HY5 scRNA scRNA -8 76 2 1903 139 0 23 chr1 38363869 38364170 -204300183 - AluJo SINE Alu -18 294 1 265 261 144 31 chr1 38364288 38364545 -204299808 - HAL1 LINE L1 -1022 1485 1200 2338 93 0 7 chr1 38364707 38365009 -204299344 + AluSx SINE Alu 1 300 -12 2713 26 3 0 chr1 38365579 38365881 -204298472 - AluY SINE Alu -8 303 1 2044 96 30 0 chr1 38367451 38367721 -204296632 + AluSx SINE Alu 21 298 -14 493 133 26 53 chr1 38368311 38368424 -204295929 + MER5A DNA MER1_type 1 110 -79 196 196 245 20 chr1 38368470 38368572 -204295781 + MIR SINE MIR 17 141 -67 2400 78 7 13 chr1 38369713 38370020 -204294333 - AluSg SINE Alu -5 305 1 212 159 0 48 chr1 38372273 38372336 -204292017 + A-rich Low_complexity Low_complexity 2 61 0 234 336 84 0 chr1 38373607 38373738 -204290615 + L2 LINE L2 2566 2707 -607 216 340 70 19 chr1 38373861 38374076 -204290277 + L2 LINE L2 2339 2564 -750 1049 121 67 6 chr1 38374149 38374314 -204290039 - AluSq SINE Alu -4 309 135 1833 164 0 3 chr1 38374343 38374473 -204289880 + AluJb SINE Alu 1 130 -182 180 0 0 0 chr1 38374473 38374493 -204289860 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1833 164 0 3 chr1 38374493 38374648 -204289705 + AluJb SINE Alu 130 285 -27 374 293 251 14 chr1 38374812 38375099 -204289254 + L2 LINE L2 2886 3240 -32 965 159 0 7 chr1 38375282 38375427 -204288926 + FRAM SINE Alu 1 144 -32 313 261 57 0 chr1 38377186 38377274 -204287079 + MIR SINE MIR 54 146 -116 22 56 0 0 chr1 38377336 38377372 -204286981 + AT_rich Low_complexity Low_complexity 1 36 0 2148 123 0 3 chr1 38379023 38379341 -204285012 + AluSx SINE Alu 1 317 0 1420 171 72 31 chr1 38379341 38379633 -204284720 - Charlie4a DNA MER1_type -202 306 3 747 226 64 43 chr1 38379989 38380224 -204284129 - MIR SINE MIR -3 259 20 242 372 21 11 chr1 38381001 38381192 -204283161 + L2 LINE L2 2174 2366 -948 509 275 161 0 chr1 38381192 38381403 -204282950 - MIR SINE MIR -17 245 1 544 295 18 12 chr1 38381691 38381857 -204282496 + MER5B DNA MER1_type 12 178 0 301 339 180 25 chr1 38382060 38382875 -204281478 + L2 LINE L2 1764 2705 -609 1441 153 9 0 chr1 38383198 38383420 -204280933 - AluJo SINE Alu -3 309 86 277 161 92 35 chr1 38385211 38385298 -204279055 + MIR SINE MIR 58 149 -59 251 229 33 66 chr1 38385818 38385879 -204278474 + MIR SINE MIR 65 124 -84 252 342 0 0 chr1 38386995 38387074 -204277279 + G-rich Low_complexity Low_complexity 3 81 0 306 0 0 0 chr1 38388457 38388491 -204275862 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 402 51 153 0 chr1 38389661 38389720 -204274633 - MADE1 DNA Mariner 0 80 13 697 295 181 0 chr1 38390758 38391012 -204273341 + MER102b DNA MER1_type 11 310 -31 186 309 283 13 chr1 38391018 38391170 -204273183 - L3 LINE CR1 -105 1472 1280 2612 66 0 0 chr1 38391205 38391510 -204272843 - AluSg SINE Alu -5 305 1 592 208 163 55 chr1 38392026 38392161 -204272192 - MIR SINE MIR -6 256 137 2166 119 3 0 chr1 38392161 38392456 -204271897 + AluSx SINE Alu 1 296 -16 915 112 0 0 chr1 38392456 38392599 -204271754 + (GGAA)n Simple_repeat Simple_repeat 3 145 0 592 208 163 55 chr1 38392599 38392664 -204271689 - MIR SINE MIR -124 138 33 341 317 165 0 chr1 38392699 38392863 -204271490 - MIR SINE MIR -44 218 28 246 105 0 0 chr1 38393124 38393162 -204271191 + (A)n Simple_repeat Simple_repeat 1 38 0 2516 62 0 3 chr1 38393559 38393864 -204270489 - AluY SINE Alu -7 304 1 4915 207 79 63 chr1 38393985 38395695 -204268658 - L1ME1 LINE L1 -14 6152 4471 1901 171 0 10 chr1 38395695 38395993 -204268360 + AluJb SINE Alu 3 297 -15 4915 207 79 63 chr1 38395993 38396641 -204267712 - L1ME1 LINE L1 -1695 4471 3731 2195 128 0 0 chr1 38396641 38396945 -204267408 - AluSx SINE Alu -8 304 1 4915 207 79 63 chr1 38396945 38397318 -204267035 - L1ME1 LINE L1 -2435 3731 3365 476 121 0 0 chr1 38397326 38397392 -204266961 - AluJ/FLAM SINE Alu -245 67 2 856 232 138 24 chr1 38397398 38397422 -204266931 - L1ME1 LINE L1 -3033 3113 3093 1761 178 13 3 chr1 38397422 38397720 -204266633 - AluJo SINE Alu -11 301 1 856 232 138 24 chr1 38397720 38398065 -204266288 - L1ME1 LINE L1 -3053 3093 2702 217 244 0 0 chr1 38398207 38398248 -204266105 + MIR3 SINE MIR 147 187 -21 29 47 0 0 chr1 38398880 38398923 -204265430 + AT_rich Low_complexity Low_complexity 1 43 0 985 169 6 12 chr1 38399731 38399903 -204264450 + FRAM SINE Alu 1 171 -5 239 320 100 20 chr1 38399999 38400099 -204264254 - L2 LINE L2 0 3272 3165 345 243 54 61 chr1 38400465 38400509 -204263844 + MER103 DNA DNA 2 45 -121 2272 108 19 0 chr1 38400509 38400816 -204263537 + AluSp SINE Alu 1 313 0 345 243 54 61 chr1 38400816 38400919 -204263434 + MER103 DNA DNA 45 148 -18 441 306 44 26 chr1 38401518 38401747 -204262606 + L1ME LINE L1 5589 5821 -345 1626 176 42 3 chr1 38401813 38402102 -204262251 + AluJo SINE Alu 1 300 -12 4588 181 36 50 chr1 38402139 38402955 -204261398 - L1MB5 LINE L1 -13 6161 5335 1412 140 184 82 chr1 38402955 38403017 -204261336 - MSTB1 LTR MaLR 0 432 378 2482 81 0 0 chr1 38403017 38403314 -204261039 + AluSg SINE Alu 1 297 -13 1412 140 184 82 chr1 38403314 38403643 -204260710 - MSTB1 LTR MaLR -54 378 1 4588 181 36 50 chr1 38403643 38403810 -204260543 - L1MB5 LINE L1 -839 5335 5167 1994 102 3 11 chr1 38403810 38404147 -204260206 - AluY SINE Alu 0 335 1 4588 181 36 50 chr1 38404147 38404175 -204260178 - L1MB5 LINE L1 -1007 5167 5140 200 118 29 0 chr1 38404175 38404209 -204260144 + T-rich Low_complexity Low_complexity 5 39 0 4588 181 36 50 chr1 38404209 38404574 -204259779 - L1MB5 LINE L1 -1034 5140 4771 2044 50 0 8 chr1 38404574 38404812 -204259541 - AluY SINE Alu -75 236 1 4588 181 36 50 chr1 38404812 38405235 -204259118 - L1MB5 LINE L1 -1403 4771 4375 2084 58 43 33 chr1 38405235 38405535 -204258818 - AluY SINE Alu 0 304 2 4588 181 36 50 chr1 38405535 38405878 -204258475 - L1MB5 LINE L1 -1799 4375 4029 1558 185 4 11 chr1 38406418 38406678 -204257675 - AluJo SINE Alu -30 282 25 1015 253 93 3 chr1 38407966 38408115 -204256238 + MER58B DNA MER1_type 1 135 -2285 2013 125 3 20 chr1 38408115 38408420 -204255933 + AluJb SINE Alu 1 300 -12 1015 253 93 3 chr1 38408420 38408582 -204255771 + MER58B DNA MER1_type 135 340 -1 267 239 109 33 chr1 38409282 38409374 -204254979 - MER5B DNA MER1_type -78 100 2 21 0 0 0 chr1 38409659 38409680 -204254673 + AT_rich Low_complexity Low_complexity 1 21 0 2263 102 0 0 chr1 38409910 38410216 -204254137 - AluSx SINE Alu 0 306 1 1048 184 0 12 chr1 38410443 38410611 -204253742 + FRAM SINE Alu 1 166 0 812 172 0 62 chr1 38410919 38411064 -204253289 + FRAM SINE Alu 11 146 -30 2185 92 14 7 chr1 38411080 38411374 -204252979 + AluSq SINE Alu 1 296 -17 315 269 144 19 chr1 38411568 38411672 -204252681 + L2 LINE L2 3194 3310 -3 414 52 0 143 chr1 38412668 38412745 -204251608 + MADE1 DNA Mariner 1 66 -14 436 241 58 92 chr1 38415986 38416093 -204248260 + MIR SINE MIR 8 109 -153 2393 54 4 0 chr1 38416093 38416404 -204247949 + AluY SINE Alu 1 312 0 436 241 58 92 chr1 38416404 38416469 -204247884 + MIR SINE MIR 109 175 -87 184 143 0 95 chr1 38416467 38416509 -204247844 + L2 LINE L2 3264 3301 -12 * 2076 129 7 7 chr1 38416752 38417054 -204247299 + AluSx SINE Alu 1 302 -10 34 24 0 0 chr1 38417268 38417309 -204247044 + AT_rich Low_complexity Low_complexity 1 41 0 189 158 0 0 chr1 38418212 38418250 -204246103 - L2 LINE L2 0 3313 3276 2010 149 10 0 chr1 38418335 38418631 -204245722 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr1 38418746 38418769 -204245584 + AT_rich Low_complexity Low_complexity 1 23 0 388 327 136 16 chr1 38418773 38419201 -204245152 - L2 LINE L2 -225 3047 2565 2123 121 0 13 chr1 38419220 38419518 -204244835 + AluSx SINE Alu 1 294 -18 2999 218 75 29 chr1 38419527 38420327 -204244026 - L1ME1 LINE L1 -9 6157 5321 730 195 31 0 chr1 38420331 38420490 -204243863 - L1MA10 LINE L1 -2 6332 6169 2358 71 3 10 chr1 38420535 38420846 -204243507 - AluY SINE Alu -2 309 1 1999 125 14 7 chr1 38420846 38421140 -204243213 - AluSx SINE Alu -15 297 1 414 276 60 0 chr1 38421145 38421279 -204243074 - L1MC/D LINE L1 -2032 5776 5635 226 260 20 0 chr1 38421408 38421458 -204242895 + L2 LINE L2 3263 3313 0 1407 182 4 32 chr1 38421546 38421799 -204242554 + AluJo SINE Alu 49 294 -18 2438 94 10 0 chr1 38421801 38422108 -204242245 + AluSg SINE Alu 1 310 0 186 338 0 0 chr1 38422302 38422379 -204241974 - L2 LINE L2 -2234 1080 1004 22 35 0 0 chr1 38422870 38422899 -204241454 + AT_rich Low_complexity Low_complexity 1 29 0 438 77 333 0 chr1 38423202 38423280 -204241073 - AluSc SINE Alu -11 298 195 3514 208 36 67 chr1 38423599 38423906 -204240447 + L1M4 LINE L1 4071 4386 -1760 2031 62 47 33 chr1 38423906 38424205 -204240148 + AluY SINE Alu 2 304 0 3514 208 36 67 chr1 38424205 38424625 -204239728 + L1M4 LINE L1 4386 4756 -1390 2021 50 0 8 chr1 38424625 38424863 -204239490 + AluY SINE Alu 1 236 -75 3514 208 36 67 chr1 38424863 38425227 -204239126 + L1M4 LINE L1 4756 5130 -1016 200 118 29 0 chr1 38425228 38425262 -204239091 + A-rich Low_complexity Low_complexity 5 39 0 2127 92 0 10 chr1 38425290 38425607 -204238746 + AluY SINE Alu 1 314 0 2092 103 10 30 chr1 38425775 38426075 -204238278 - AluSg SINE Alu -16 294 1 3035 230 38 28 chr1 38426075 38426384 -204237969 - L1ME1 LINE L1 -204 6460 6156 2487 70 3 0 chr1 38426384 38426682 -204237671 - AluSp SINE Alu -14 299 1 3035 230 38 28 chr1 38426682 38427661 -204236692 - L1ME1 LINE L1 -508 6156 5164 1655 183 71 53 chr1 38427679 38428098 -204236255 - MLT1C LTR MaLR 0 467 31 1483 206 40 30 chr1 38428119 38428248 -204236105 - L1ME1 LINE L1 -1644 5000 4874 765 191 24 8 chr1 38428248 38428374 -204235979 + FLAM_A SINE Alu 1 128 -5 1483 206 40 30 chr1 38428374 38428647 -204235706 - L1ME1 LINE L1 -1770 4874 4594 234 0 0 0 chr1 38428721 38428747 -204235606 + (TA)n Simple_repeat Simple_repeat 2 27 0 1792 15 0 0 chr1 38428755 38428956 -204235397 - L1HS LINE L1 0 6155 5955 653 272 96 33 chr1 38428952 38429224 -204235129 - L1ME1 LINE L1 -5342 1204 916 * 284 278 80 46 chr1 38429305 38429456 -204234897 - L1ME1 LINE L1 -5671 871 716 249 323 97 16 chr1 38429442 38429566 -204234787 - L1ME LINE L1 -5605 465 332 * 692 153 15 58 chr1 38429754 38429891 -204234462 - FLAM_A SINE Alu -2 131 1 1646 143 77 14 chr1 38430064 38430351 -204234002 + AluJb SINE Alu 5 309 -3 836 261 64 45 chr1 38430494 38430568 -204233785 - L1ME LINE L1 -5219 851 780 1526 178 19 54 chr1 38430568 38430883 -204233470 + AluJo SINE Alu 1 304 -8 836 261 64 45 chr1 38430883 38431214 -204233139 - L1ME LINE L1 -5290 780 431 1939 125 38 10 chr1 38431214 38431502 -204232851 - AluSx SINE Alu -16 296 1 836 261 64 45 chr1 38431502 38431669 -204232684 - L1ME LINE L1 -5639 431 269 630 310 63 49 chr1 38431811 38432256 -204232097 - L1ME LINE L1 -5610 460 10 515 319 114 34 chr1 38432266 38432963 -204231390 - L2 LINE L2 -774 2540 1715 1164 271 124 15 chr1 38433185 38433595 -204230758 + L1MC4a LINE L1 22 476 -5920 2246 115 3 10 chr1 38433608 38433922 -204230431 - AluSx SINE Alu 0 312 1 999 143 200 0 chr1 38433922 38434097 -204230256 - AluJb SINE Alu -17 295 86 2836 250 76 28 chr1 38434112 38434676 -204229677 + L1MC4a LINE L1 489 1024 -5372 2380 119 143 11 chr1 38434676 38435054 -204229299 + MSTA LTR MaLR 1 428 0 2836 250 76 28 chr1 38435054 38435570 -204228783 + L1MC4a LINE L1 1024 1621 -4775 2987 188 77 136 chr1 38435587 38436190 -204228163 + L1MC4a LINE L1 3198 3835 -2380 2258 102 0 0 chr1 38436190 38436508 -204227845 + AluSg SINE Alu 1 318 0 2987 188 77 136 chr1 38436508 38436834 -204227519 + L1MC4a LINE L1 3835 4162 -2053 761 200 0 0 chr1 38436834 38436964 -204227389 + FLAM_C SINE Alu 2 131 -12 2987 188 77 136 chr1 38436964 38437268 -204227085 + L1MC4a LINE L1 4162 4482 -1733 1521 159 33 0 chr1 38437550 38437795 -204226558 + AluJb SINE Alu 25 277 -35 216 0 0 0 chr1 38437798 38437822 -204226531 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2308 69 35 3 chr1 38437984 38438274 -204226079 + AluY SINE Alu 1 299 -12 1330 266 91 59 chr1 38439347 38439844 -204224509 + L1MC4a LINE L1 5421 5944 -1933 2344 97 3 0 chr1 38439844 38440142 -204224211 + AluSp SINE Alu 1 299 -14 1330 266 91 59 chr1 38440142 38440284 -204224069 + L1MC4a LINE L1 5944 6080 -1797 240 59 0 0 chr1 38440633 38440667 -204223686 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2318 118 6 59 chr1 38441470 38441826 -204222527 - MER1B DNA MER1_type 0 337 1 2496 128 11 19 chr1 38442396 38442763 -204221590 + THE1B LTR MaLR 1 364 0 12562 90 6 2 chr1 38442763 38444337 -204220016 + THE1B-int LTR MaLR 1 1580 0 2531 99 29 56 chr1 38444337 38444711 -204219642 + THE1B LTR MaLR 1 364 0 1517 151 13 0 chr1 38445492 38445724 -204218629 + AluJb SINE Alu 21 255 -57 23 54 0 0 chr1 38445990 38446027 -204218326 + AT_rich Low_complexity Low_complexity 1 37 0 384 271 85 34 chr1 38446131 38446249 -204218104 - L2 LINE L2 -2 3270 3147 2144 122 3 3 chr1 38446352 38446648 -204217705 - AluSx SINE Alu -16 296 1 361 257 30 21 chr1 38446667 38446838 -204217515 - L1ME LINE L1 -303 5818 5646 1131 300 111 24 chr1 38446855 38447449 -204216904 + L2 LINE L2 1948 2593 -721 590 322 64 13 chr1 38447454 38447687 -204216666 + MIR SINE MIR 6 250 -12 1489 152 0 0 chr1 38447688 38447905 -204216448 - AluJb SINE Alu -12 300 84 425 354 148 18 chr1 38447938 38448503 -204215850 + L2 LINE L2 2586 3270 -2 1596 193 3 17 chr1 38448536 38448832 -204215521 - AluJo SINE Alu -20 292 1 2184 151 0 0 chr1 38448870 38449181 -204215172 + AluJb SINE Alu 1 311 -1 2106 119 7 11 chr1 38450969 38451254 -204213099 - AluSx SINE Alu -28 284 1 2182 95 27 7 chr1 38451446 38451740 -204212613 - AluSx SINE Alu -12 300 1 2341 115 0 6 chr1 38451743 38452057 -204212296 - AluSx SINE Alu 0 312 1 696 318 60 0 chr1 38452859 38453092 -204211261 + MIR SINE MIR 1 247 -15 211 273 103 39 chr1 38453108 38453210 -204211143 - MIR SINE MIR -65 143 54 792 183 0 23 chr1 38453304 38453435 -204210918 + FLAM_A SINE Alu 1 128 -5 242 295 133 50 chr1 38453604 38453906 -204210447 + L2 LINE L2 1734 2060 -1254 1166 141 0 0 chr1 38454137 38454300 -204210053 - FRAM SINE Alu -14 162 1 214 319 126 43 chr1 38454494 38454701 -204209652 + L2 LINE L2 2831 3054 -218 826 195 49 24 chr1 38454814 38454978 -204209375 - MER20 DNA MER1_type 0 219 52 7089 93 6 23 chr1 38455659 38456045 -204208308 + L1MA2 LINE L1 5062 5453 -851 2636 46 0 0 chr1 38456045 38456348 -204208005 + AluY SINE Alu 1 303 -8 7089 93 6 23 chr1 38456348 38457227 -204207126 + L1MA2 LINE L1 5453 6304 0 29 0 0 0 chr1 38457228 38457257 -204207096 + AT_rich Low_complexity Low_complexity 1 29 0 192 158 0 0 chr1 38458160 38458198 -204206155 - L2 LINE L2 0 3313 3276 2007 152 10 0 chr1 38458283 38458579 -204205774 + AluJb SINE Alu 1 299 -13 225 0 0 0 chr1 38458607 38458632 -204205721 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr1 38458692 38458715 -204205638 + AT_rich Low_complexity Low_complexity 1 23 0 413 318 157 19 chr1 38458719 38459140 -204205213 - L2 LINE L2 -225 3047 2565 2132 121 0 13 chr1 38459159 38459457 -204204896 + AluSx SINE Alu 1 294 -18 2672 220 77 16 chr1 38459466 38460234 -204204119 - L1ME1 LINE L1 -9 6157 5343 2707 231 39 28 chr1 38460280 38460474 -204203879 - L1ME1 LINE L1 -5 6659 6469 2697 45 0 0 chr1 38460474 38460783 -204203570 - AluY SINE Alu -2 309 1 2707 231 39 28 chr1 38460783 38461090 -204203263 - L1ME1 LINE L1 -195 6469 6167 2479 70 3 0 chr1 38461090 38461388 -204202965 - AluSp SINE Alu -14 299 1 2707 231 39 28 chr1 38461388 38462367 -204201986 - L1ME1 LINE L1 -497 6167 5164 1485 182 71 54 chr1 38462385 38462804 -204201549 - MLT1C LTR MaLR 0 467 31 1315 208 38 35 chr1 38462833 38462954 -204201399 - L1ME1 LINE L1 -1655 4989 4870 717 191 24 8 chr1 38462954 38463080 -204201273 + FLAM_A SINE Alu 1 128 -5 1315 208 38 35 chr1 38463080 38463353 -204201000 - L1ME1 LINE L1 -1774 4870 4594 360 0 0 0 chr1 38463427 38463467 -204200886 + (TA)n Simple_repeat Simple_repeat 2 41 0 1659 0 0 0 chr1 38463467 38463660 -204200693 - L1HS LINE L1 -3 6152 5960 608 255 21 27 chr1 38463661 38463849 -204200504 - L1ME1 LINE L1 -5342 1204 1018 356 314 76 50 chr1 38463886 38464350 -204200003 - L1ME1 LINE L1 -5539 1095 716 641 153 15 58 chr1 38464463 38464600 -204199753 - FLAM_A SINE Alu -2 131 1 1670 146 76 14 chr1 38464773 38465061 -204199292 + AluJb SINE Alu 5 310 -2 744 259 53 45 chr1 38465204 38465278 -204199075 - L1ME LINE L1 -5219 851 779 1589 182 19 32 chr1 38465278 38465586 -204198767 + AluJo SINE Alu 1 304 -8 744 259 53 45 chr1 38465586 38465917 -204198436 - L1ME LINE L1 -5291 779 445 1948 125 38 10 chr1 38465917 38466205 -204198148 - AluSx SINE Alu -16 296 1 744 259 53 45 chr1 38466205 38466332 -204198021 - L1ME LINE L1 -5625 445 320 497 312 63 49 chr1 38466514 38466959 -204197394 - L1ME LINE L1 -5610 460 10 540 316 113 32 chr1 38466969 38467666 -204196687 - L2 LINE L2 -774 2540 1715 1028 281 122 12 chr1 38467888 38468298 -204196055 + L1ME1 LINE L1 22 476 -5920 2254 115 3 10 chr1 38468311 38468625 -204195728 - AluSx SINE Alu 0 312 1 1003 143 200 0 chr1 38468625 38468800 -204195553 - AluJb SINE Alu -17 295 86 2456 250 76 28 chr1 38468815 38469379 -204194974 + L1ME1 LINE L1 489 1024 -5372 2197 119 143 11 chr1 38469379 38469757 -204194596 + MSTA LTR MaLR 1 428 0 2456 250 76 28 chr1 38469757 38470273 -204194080 + L1ME1 LINE L1 1024 1621 -4775 3135 172 67 199 chr1 38470293 38470893 -204193460 + L1ME1 LINE L1 3201 3879 -2336 2269 99 0 0 chr1 38470893 38471211 -204193142 + AluSg SINE Alu 1 318 0 3135 172 67 199 chr1 38471211 38471536 -204192817 + L1ME1 LINE L1 3879 4245 -1970 711 199 0 0 chr1 38471536 38471667 -204192686 + FLAM_C SINE Alu 1 131 -12 3135 172 67 199 chr1 38471667 38472252 -204192101 + L1ME1 LINE L1 4245 4906 -1309 1557 163 32 0 chr1 38472252 38472531 -204191822 + AluJb SINE Alu 23 309 0 3135 172 67 199 chr1 38472531 38472826 -204191527 + L1ME1 LINE L1 4906 5238 -977 2147 117 0 7 chr1 38472826 38473135 -204191218 + AluSg SINE Alu 1 307 -3 3135 172 67 199 chr1 38473135 38473172 -204191181 + L1ME1 LINE L1 5238 5278 -937 1622 166 7 58 chr1 38473172 38473480 -204190873 + AluJb SINE Alu 1 292 -20 3135 172 67 199 chr1 38473480 38473750 -204190603 + L1ME1 LINE L1 5278 5098 -1117 2191 98 27 7 chr1 38473750 38474046 -204190307 + AluSx SINE Alu 1 302 -10 3135 172 67 199 chr1 38474046 38474263 -204190090 + L1ME1 LINE L1 5097 5341 -874 227 27 0 54 chr1 38474282 38474319 -204190034 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1123 168 0 0 chr1 38474323 38474484 -204189869 - AluJb SINE Alu -23 289 129 2755 184 27 65 chr1 38474492 38474797 -204189556 + L1ME1 LINE L1 5381 5696 -539 2216 131 0 0 chr1 38474797 38475103 -204189250 + AluSx SINE Alu 1 306 -6 2755 184 27 65 chr1 38475103 38475322 -204189031 + L1ME1 LINE L1 5696 5869 -366 2165 127 0 10 chr1 38475322 38475630 -204188723 + AluSx SINE Alu 2 306 -6 2755 184 27 65 chr1 38475630 38475871 -204188482 + L1ME1 LINE L1 5869 6118 -117 425 210 57 0 chr1 38475909 38476033 -204188320 + L1MB7 LINE L1 6045 6175 -9 445 256 42 30 chr1 38476033 38476301 -204188052 + L1MA10 LINE L1 5891 6327 -5 2199 106 3 7 chr1 38476710 38477013 -204187340 + AluSq SINE Alu 1 302 -11 2010 174 19 11 chr1 38477878 38478240 -204186113 + MLT1A1 LTR MaLR 1 365 0 256 136 0 99 chr1 38478409 38478490 -204185863 + (CAAAAA)n Simple_repeat Simple_repeat 5 77 0 2402 90 0 3 chr1 38480254 38480554 -204183799 + AluSp SINE Alu 1 299 -14 668 249 143 46 chr1 38480554 38480656 -204183697 + MIR SINE MIR 22 113 -149 2010 128 13 7 chr1 38480656 38480960 -204183393 + AluSc SINE Alu 1 306 -3 668 249 143 46 chr1 38480960 38481074 -204183279 + MIR SINE MIR 113 259 -3 426 39 0 0 chr1 38481081 38481133 -204183220 + (CAT)n Simple_repeat Simple_repeat 3 54 0 919 305 89 60 chr1 38481144 38482022 -204182331 + L2 LINE L2 688 1590 -1724 677 132 45 196 chr1 38482022 38482242 -204182111 + MER5A DNA MER1_type 1 187 -2 483 323 135 33 chr1 38482309 38482349 -204182004 + L2 LINE L2 2599 2633 -680 2194 168 57 19 chr1 38482349 38482542 -204181811 + Tigger2a DNA MER2_type 1 185 -2523 2216 122 0 0 chr1 38482542 38482845 -204181508 - AluSx SINE Alu -9 303 1 2373 96 0 0 chr1 38482853 38483155 -204181198 - AluY SINE Alu -9 302 1 2194 168 57 19 chr1 38483155 38483370 -204180983 + Tigger2a DNA MER2_type 191 434 0 483 323 135 33 chr1 38483370 38483959 -204180394 + L2 LINE L2 2633 3296 -17 201 298 91 58 chr1 38483961 38484082 -204180271 + L2 LINE L2 2928 3052 -220 418 288 54 18 chr1 38484203 38484314 -204180039 + L2 LINE L2 3145 3259 -13 518 275 84 39 chr1 38484379 38484557 -204179796 + MIR SINE MIR 48 233 -29 252 0 0 0 chr1 38486076 38486104 -204178249 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 838 206 24 0 chr1 38486761 38486926 -204177427 + MER96 DNA MER1_type? 7 175 0 946 301 54 9 chr1 38487554 38487979 -204176374 + L1MEc LINE L1 22 465 -5931 537 215 40 13 chr1 38487972 38488121 -204176232 + L1M4 LINE L1 2907 3059 -3087 * 830 221 25 0 chr1 38488121 38488320 -204176033 + MLT1C LTR MaLR 192 395 -72 284 133 100 0 chr1 38489036 38489096 -204175257 - AluSc SINE Alu 0 299 234 1625 178 7 4 chr1 38489245 38489567 -204174786 - AluJo SINE Alu 0 323 1 953 127 15 0 chr1 38490107 38490241 -204174112 + AluJo SINE Alu 1 136 -176 303 286 136 5 chr1 38490377 38490576 -204173777 + L1MC4a LINE L1 5689 5913 -1895 2115 136 7 0 chr1 38490647 38490957 -204173396 + AluSx SINE Alu 1 312 0 477 210 65 62 chr1 38491001 38491246 -204173107 + L1M4 LINE L1 3047 3295 -2851 2384 104 0 10 chr1 38491246 38491555 -204172798 + AluSx SINE Alu 1 306 -6 477 210 65 62 chr1 38491555 38491585 -204172768 + L1M4 LINE L1 3295 3323 -2823 984 209 67 0 chr1 38491589 38491799 -204172554 + MER58A DNA MER1_type 1 224 0 605 172 91 159 chr1 38491800 38491898 -204172455 + LTR37B LTR ERV1 114 217 -251 283 59 20 20 chr1 38491898 38491949 -204172404 + (TA)n Simple_repeat Simple_repeat 2 52 0 605 172 91 159 chr1 38491949 38491992 -204172361 + LTR37B LTR ERV1 217 261 -207 1706 201 7 7 chr1 38491992 38492296 -204172057 + AluJo SINE Alu 1 304 -8 605 172 91 159 chr1 38492296 38492525 -204171828 + LTR37B LTR ERV1 261 460 -8 402 280 111 32 chr1 38492576 38492765 -204171588 - L3 LINE CR1 -3 1574 1371 184 321 54 0 chr1 38492967 38493023 -204171330 - L2 LINE L2 -10 3262 3204 15492 152 11 16 chr1 38493047 38493690 -204170663 + L1PA14 LINE L1 2154 2799 -3362 2290 113 3 0 chr1 38493690 38493991 -204170362 + AluSq SINE Alu 1 302 -11 15492 152 11 16 chr1 38493991 38497379 -204166974 + L1PA14 LINE L1 2799 6158 -3 2154 80 98 0 chr1 38497381 38497657 -204166696 + AluSq SINE Alu 1 303 -10 22 35 0 0 chr1 38497960 38497989 -204166364 + AT_rich Low_complexity Low_complexity 1 29 0 184 338 0 0 chr1 38498480 38498557 -204165796 + L2 LINE L2 1004 1080 -2234 2434 95 10 0 chr1 38498751 38499057 -204165296 - AluSg SINE Alu -1 309 1 1436 182 4 32 chr1 38499059 38499312 -204165041 - AluJo SINE Alu -18 294 49 224 316 18 0 chr1 38499400 38499457 -204164896 - L2 LINE L2 0 3313 3256 541 289 50 35 chr1 38499579 38499718 -204164635 + L1MC4 LINE L1 5635 5770 -2038 2032 122 14 7 chr1 38499718 38500013 -204164340 + AluSx SINE Alu 1 297 -15 2206 97 0 0 chr1 38500013 38500300 -204164053 + AluY SINE Alu 1 288 -23 541 289 50 35 chr1 38500300 38500311 -204164042 + L1MC4 LINE L1 5770 5779 -2029 275 26 51 0 chr1 38500311 38500350 -204164003 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2440 83 0 3 chr1 38500350 38500662 -204163691 + AluY SINE Alu 1 311 0 541 289 50 35 chr1 38500662 38500847 -204163506 + L1MC4 LINE L1 5778 5978 -1830 2395 100 0 0 chr1 38500928 38501237 -204163116 - AluSg SINE Alu -1 309 1 440 316 47 51 chr1 38501318 38501395 -204162958 + L2 LINE L2 2735 2811 -461 2240 92 7 10 chr1 38501395 38501698 -204162655 + AluSc SINE Alu 1 302 -7 440 316 47 51 chr1 38501698 38502074 -204162279 + L2 LINE L2 2811 3272 0 483 345 138 28 chr1 38502083 38502474 -204161879 - L2 LINE L2 -2519 795 362 5882 136 31 17 chr1 38503370 38504916 -204159437 - L1MA4A LINE L1 -7 7358 5806 236 217 24 36 chr1 38504925 38505008 -204159345 + L1MC4 LINE L1 6614 6695 -1347 242 109 0 0 chr1 38505010 38505056 -204159297 + LTR66 LTR ERVL 394 439 -171 381 93 0 0 chr1 38505056 38505110 -204159243 + (TA)n Simple_repeat Simple_repeat 2 55 0 1262 178 0 5 chr1 38505117 38505319 -204159034 - AluJo SINE Alu -24 288 88 567 92 31 0 chr1 38505344 38505442 -204158911 - L1 LINE L1 -1404 4742 4642 1226 187 0 52 chr1 38505447 38505677 -204158676 + AluJo SINE Alu 5 222 -90 7676 167 42 36 chr1 38505677 38506748 -204157605 - L1MA4A LINE L1 -2164 5044 3955 1684 161 27 0 chr1 38506748 38507009 -204157344 - AluJo SINE Alu -12 300 33 7676 167 42 36 chr1 38507009 38507725 -204156628 - L1MA4A LINE L1 -3253 3955 3245 694 171 8 16 chr1 38507730 38507853 -204156500 - FLAM_C SINE Alu -10 133 12 7401 136 51 26 chr1 38507862 38508703 -204155650 - L1MA4A LINE L1 -3956 3253 2360 1614 188 43 0 chr1 38508703 38508985 -204155368 - AluJb SINE Alu -18 294 1 7401 136 51 26 chr1 38508985 38509575 -204154778 - L1MA4A LINE L1 -4849 2360 1786 3493 212 77 26 chr1 38509602 38510452 -204153901 - L1MA4A LINE L1 -6224 985 93 1895 101 72 0 chr1 38510638 38510915 -204153438 + AluSx SINE Alu 1 297 -15 2596 71 0 0 chr1 38513237 38513547 -204150806 + AluY SINE Alu 1 310 -1 1572 109 87 0 chr1 38513555 38513784 -204150569 + AluSg SINE Alu 60 308 -2 722 240 87 58 chr1 38514094 38514336 -204150017 + MIR SINE MIR 14 262 0 223 300 148 74 chr1 38514349 38514579 -204149774 + L2 LINE L2 3001 3247 -25 180 176 0 0 chr1 38516028 38516062 -204148291 + T-rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr1 38516275 38516297 -204148056 + (A)n Simple_repeat Simple_repeat 1 22 0 2302 130 0 0 chr1 38516968 38517276 -204147077 + AluSx SINE Alu 1 308 -4 439 264 25 41 chr1 38519545 38519601 -204144752 + L2 LINE L2 3153 3208 -64 1814 173 10 3 chr1 38519601 38519901 -204144452 - AluJo SINE Alu -10 302 1 439 264 25 41 chr1 38519901 38519965 -204144388 + L2 LINE L2 3208 3271 -1 2441 112 0 0 chr1 38519997 38520309 -204144044 - AluSx SINE Alu 0 312 1 488 297 133 6 chr1 38520827 38521055 -204143298 - MIR SINE MIR -8 254 3 2209 131 0 3 chr1 38522745 38523050 -204141303 + AluSx SINE Alu 1 304 -8 287 313 36 0 chr1 38523281 38523364 -204140989 - L2 LINE L2 -2 3311 3226 678 310 71 22 chr1 38523404 38523769 -204140584 + L1MEc LINE L1 35 417 -5979 787 319 119 36 chr1 38524237 38524291 -204140062 - L2 LINE L2 -810 2504 2456 2048 104 61 0 chr1 38524291 38524569 -204139784 + AluSg SINE Alu 1 295 -15 787 319 119 36 chr1 38524569 38525214 -204139139 - L2 LINE L2 -858 2456 1747 184 163 302 0 chr1 38525231 38525274 -204139079 + L2 LINE L2 3258 3313 0 949 156 59 9 chr1 38525454 38525688 -204138665 + L1M4 LINE L1 5468 5711 -473 22 35 0 0 chr1 38525745 38525774 -204138579 + AT_rich Low_complexity Low_complexity 1 29 0 357 242 24 18 chr1 38525790 38525955 -204138398 + (TA)n Simple_repeat Simple_repeat 1 166 0 245 207 12 37 chr1 38525967 38526049 -204138304 + (TA)n Simple_repeat Simple_repeat 1 80 0 2671 120 12 0 chr1 38526050 38526474 -204137879 + L1MB7 LINE L1 5646 6074 -110 2094 138 3 0 chr1 38526499 38526795 -204137558 + AluSx SINE Alu 1 297 -15 260 249 83 41 chr1 38527181 38527350 -204137003 + Charlie7 DNA MER1_type 2434 2609 -3 368 349 91 42 chr1 38527365 38527710 -204136643 + L2 LINE L2 2770 3147 -125 1781 170 42 0 chr1 38527710 38527998 -204136355 - AluJb SINE Alu -12 300 1 368 349 91 42 chr1 38527998 38528129 -204136224 + L2 LINE L2 3147 3270 -2 405 238 90 25 chr1 38528500 38528622 -204135731 - L2 LINE L2 0 3313 3184 234 238 123 94 chr1 38529297 38529398 -204134955 - L1ME LINE L1 -195 5926 5829 760 173 24 0 chr1 38529398 38529525 -204134828 - FLAM_A SINE Alu -3 130 1 234 238 123 94 chr1 38529525 38529763 -204134590 - L1ME LINE L1 -292 5829 5577 433 275 136 31 chr1 38529773 38529968 -204134385 - L1ME LINE L1 -611 5510 5326 2271 113 0 3 chr1 38529968 38530278 -204134075 - AluSx SINE Alu -3 309 1 433 275 136 31 chr1 38530278 38530310 -204134043 - L1ME LINE L1 -795 5326 5299 2197 93 3 17 chr1 38530724 38531015 -204133338 + AluSc SINE Alu 3 289 -20 781 267 18 24 chr1 38531050 38531300 -204133053 + MIR SINE MIR 3 251 -11 1153 217 52 22 chr1 38531308 38531452 -204132901 + AluJo SINE Alu 3 141 -171 1981 134 7 49 chr1 38531452 38531758 -204132595 + AluSx SINE Alu 4 296 -16 1153 217 52 22 chr1 38531758 38531885 -204132468 + AluJo SINE Alu 141 282 -30 297 0 0 0 chr1 38532370 38532403 -204131950 + (GAAA)n Simple_repeat Simple_repeat 1 33 0 199 273 227 38 chr1 38532616 38532748 -204131605 - MIR SINE MIR -36 226 70 333 287 10 40 chr1 38533452 38533553 -204130800 + MIR3 SINE MIR 9 106 -102 246 176 98 0 chr1 38533649 38533700 -204130653 + Charlie8 DNA MER1_type 222 277 -2140 243 88 0 0 chr1 38537078 38537112 -204127241 + (CTG)n Simple_repeat Simple_repeat 3 36 0 255 228 25 25 chr1 38537650 38537729 -204126624 + CT-rich Low_complexity Low_complexity 2 80 0 234 278 8 90 chr1 38538486 38538619 -204125734 + L3b LINE CR1 1332 1453 -130 232 343 112 28 chr1 38538701 38538879 -204125474 + L3b LINE CR1 1362 1554 -29 191 36 36 0 chr1 38540180 38540208 -204124145 + (CA)n Simple_repeat Simple_repeat 2 30 0 622 326 62 5 chr1 38541506 38541730 -204122623 - MIR SINE MIR -6 256 20 614 248 111 0 chr1 38543638 38543791 -204120562 - MIR SINE MIR -72 190 21 459 0 0 0 chr1 38545289 38545340 -204119013 + (CA)n Simple_repeat Simple_repeat 1 51 0 183 286 20 0 chr1 38545380 38545429 -204118924 + L2 LINE L2 3253 3302 -11 442 305 115 20 chr1 38545500 38545700 -204118653 - MIR SINE MIR -27 235 17 319 218 64 0 chr1 38545824 38545902 -204118451 - Charlie8 DNA MER1_type -2244 173 91 2037 159 3 0 chr1 38546278 38546586 -204117767 + AluJo SINE Alu 1 309 -3 765 309 177 29 chr1 38546707 38546920 -204117433 - L2 LINE L2 -338 2976 2796 802 169 0 8 chr1 38546920 38547050 -204117303 - FLAM_C SINE Alu -3 130 2 765 309 177 29 chr1 38547050 38547561 -204116792 - L2 LINE L2 -518 2796 2145 249 296 0 0 chr1 38548489 38548543 -204115810 - L2 LINE L2 -8 3264 3211 267 340 154 26 chr1 38548642 38548798 -204115555 - L2 LINE L2 -532 2782 2607 962 214 0 6 chr1 38548800 38548973 -204115380 - MER5A DNA MER1_type -1 188 17 318 102 2 0 chr1 38548975 38549026 -204115327 - FLAM_A SINE Alu -31 102 58 421 307 63 89 chr1 38549137 38549491 -204114862 - L2 LINE L2 -773 2541 2202 2242 124 3 0 chr1 38549491 38549790 -204114563 + AluSx SINE Alu 1 300 -12 421 307 63 89 chr1 38549790 38549943 -204114410 - L2 LINE L2 -1112 2202 2047 265 247 56 130 chr1 38550549 38550707 -204113646 - MIR3 SINE MIR -31 177 32 842 224 89 14 chr1 38550707 38550921 -204113432 + MIR SINE MIR 2 231 -31 228 353 121 0 chr1 38551631 38551747 -204112606 - MIR SINE MIR -63 145 16 25 31 0 0 chr1 38551907 38551939 -204112414 + GC_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 38552849 38552887 -204111466 + GC_rich Low_complexity Low_complexity 1 38 0 202 217 17 0 chr1 38554306 38554366 -204109987 + (TG)n Simple_repeat Simple_repeat 1 61 0 200 217 52 0 chr1 38555594 38555709 -204108644 + (CCCCAG)n Simple_repeat Simple_repeat 1 121 0 1316 65 0 27 chr1 38556919 38557103 -204107250 + AluSc SINE Alu 118 296 -13 603 189 81 0 chr1 38557382 38557469 -204106884 + MER96B DNA MER1_type? 5 84 -333 2176 80 40 0 chr1 38557469 38557769 -204106584 + AluSx SINE Alu 1 312 0 2215 84 0 7 chr1 38557771 38558070 -204106283 + AluSq SINE Alu 1 297 -16 1822 131 32 0 chr1 38558072 38558354 -204105999 - AluSx SINE Alu -21 291 1 603 189 81 0 chr1 38558354 38558408 -204105945 + MER96B DNA MER1_type? 84 164 -253 181 261 89 51 chr1 38558492 38558584 -204105769 - L2 LINE L2 -530 2784 2682 2206 104 0 10 chr1 38558584 38558891 -204105462 + AluSq SINE Alu 1 304 -9 181 261 89 51 chr1 38558891 38558955 -204105398 - L2 LINE L2 -632 2682 2622 418 238 0 95 chr1 38559060 38559138 -204105215 + MER5A DNA MER1_type 1 60 -129 2309 45 0 49 chr1 38559138 38559446 -204104907 + AluY SINE Alu 1 293 -18 418 238 0 95 chr1 38559446 38559514 -204104839 + MER5A DNA MER1_type 60 133 -56 3421 205 40 50 chr1 38559516 38560227 -204104126 - L1MB8 LINE L1 0 6178 5461 2275 92 3 0 chr1 38560227 38560531 -204103822 - AluSp SINE Alu -8 305 1 2074 114 0 13 chr1 38560531 38560837 -204103516 - AluSg SINE Alu -8 302 1 3421 205 40 50 chr1 38560837 38561124 -204103229 - L1MB8 LINE L1 -715 5463 5189 28 48 0 0 chr1 38561124 38561166 -204103187 + AT_rich Low_complexity Low_complexity 1 42 0 816 156 0 0 chr1 38561166 38561294 -204103059 - FLAM_C SINE Alu -7 136 9 868 188 6 61 chr1 38561298 38561479 -204102874 - FAM SINE Alu 0 175 5 712 180 0 50 chr1 38561484 38561551 -204102802 - L1MB8 LINE L1 -951 5195 5126 2162 104 10 0 chr1 38561551 38561860 -204102493 - AluSx SINE Alu 0 312 1 712 180 0 50 chr1 38561860 38561953 -204102400 - L1MB8 LINE L1 -1020 5126 5043 842 138 8 0 chr1 38561972 38562102 -204102251 - AluSq/x SINE Alu -182 131 1 351 0 0 0 chr1 38562263 38562302 -204102051 + (TG)n Simple_repeat Simple_repeat 1 39 0 1750 144 24 27 chr1 38562764 38563062 -204101291 - AluJo SINE Alu -15 297 1 1852 125 54 0 chr1 38563197 38563493 -204100860 - AluJo SINE Alu 0 312 1 449 217 75 0 chr1 38563877 38563983 -204100370 + Charlie8 DNA MER1_type 38 151 -2266 1325 140 20 120 chr1 38564134 38564422 -204099931 + MER33 DNA MER1_type 5 253 -2332 1940 131 0 14 chr1 38564422 38564719 -204099634 + AluJb SINE Alu 1 293 -19 1325 140 20 120 chr1 38564719 38564781 -204099572 + MER33 DNA MER1_type 253 320 -4 269 360 53 9 chr1 38564863 38564977 -204099376 + MIR SINE MIR 2 120 -142 207 376 40 10 chr1 38565449 38565550 -204098803 + L2 LINE L2 3153 3256 -16 724 232 111 31 chr1 38565550 38565786 -204098567 + MIR SINE MIR 4 255 -7 2362 81 3 0 chr1 38566017 38566324 -204098029 + AluSg SINE Alu 1 308 -2 380 331 9 17 chr1 38566775 38566922 -204097431 + MIR SINE MIR 5 148 -62 432 0 0 0 chr1 38567848 38567896 -204096457 + (TG)n Simple_repeat Simple_repeat 1 48 0 189 0 0 0 chr1 38568153 38568174 -204096179 + (TG)n Simple_repeat Simple_repeat 1 21 0 222 160 0 0 chr1 38568933 38568983 -204095370 + (TG)n Simple_repeat Simple_repeat 2 51 0 2233 90 0 3 chr1 38570346 38570647 -204093706 - AluSq SINE Alu -13 300 1 1775 151 14 3 chr1 38570665 38570957 -204093396 + AluJb SINE Alu 1 295 -17 2121 113 35 56 chr1 38570989 38571055 -204093298 - MLT1A1 LTR MaLR 0 365 299 1909 141 17 0 chr1 38571055 38571352 -204093001 - AluSx SINE Alu -10 302 1 2121 113 35 56 chr1 38571352 38571658 -204092695 - MLT1A1 LTR MaLR -66 299 1 221 146 21 0 chr1 38571674 38571722 -204092631 + GA-rich Low_complexity Low_complexity 2 50 0 1557 158 108 0 chr1 38571722 38572001 -204092352 + AluJo SINE Alu 1 309 -3 428 302 201 0 chr1 38572476 38572655 -204091698 + MIR SINE MIR 48 262 0 394 260 68 62 chr1 38572839 38572985 -204091368 + MIR SINE MIR 68 214 -48 1436 274 313 20 chr1 38574650 38575741 -204088612 + L2 LINE L2 1566 2975 -339 656 246 114 23 chr1 38576063 38576283 -204088070 - MER113 DNA MER1_type? -33 488 249 214 224 132 13 chr1 38576414 38576490 -204087863 + MIR SINE MIR 174 258 -4 217 256 105 47 chr1 38576552 38576638 -204087715 - MIR3 SINE MIR -41 167 77 1994 139 3 3 chr1 38576984 38577287 -204087066 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr1 38577287 38577310 -204087043 + AT_rich Low_complexity Low_complexity 1 23 0 268 309 150 48 chr1 38578225 38578510 -204085843 - L2 LINE L2 -443 2871 2536 1751 154 3 35 chr1 38578510 38578822 -204085531 + AluJo SINE Alu 1 302 -10 268 309 150 48 chr1 38578822 38578915 -204085438 - L2 LINE L2 -778 2536 2454 1216 182 34 19 chr1 38578915 38579179 -204085174 + L1MD3 LINE L1 7727 7994 -1 352 353 81 23 chr1 38579182 38579403 -204084950 - L2 LINE L2 -853 2461 2228 446 286 30 8 chr1 38579512 38579645 -204084708 - MIR SINE MIR -3 259 124 2304 76 0 22 chr1 38579717 38580033 -204084320 - AluSx SINE Alu -3 309 1 298 203 72 0 chr1 38580398 38580467 -204083886 + MER5A DNA MER1_type 2 75 -114 501 227 30 0 chr1 38580562 38580694 -204083659 + L1MC4a LINE L1 5760 5895 -1913 1731 155 13 13 chr1 38580710 38581014 -204083339 + AluJb SINE Alu 1 304 -8 2253 84 0 0 chr1 38581159 38581455 -204082898 - AluSc SINE Alu -13 296 1 21 0 0 0 chr1 38581531 38581552 -204082801 + AT_rich Low_complexity Low_complexity 1 21 0 526 193 128 0 chr1 38582056 38582165 -204082188 - L2 LINE L2 -6 3307 3185 1381 137 105 25 chr1 38582427 38582704 -204081649 + AluJo SINE Alu 1 299 -13 2299 68 3 3 chr1 38583161 38583455 -204080898 + AluSq SINE Alu 5 298 -15 408 263 53 58 chr1 38583463 38583653 -204080700 + MER5A DNA MER1_type 1 189 0 6480 124 44 23 chr1 38584848 38586742 -204077611 + L1MA5A LINE L1 4125 6063 -234 2198 102 0 0 chr1 38586742 38587047 -204077306 + AluSx SINE Alu 1 305 -7 6480 124 44 23 chr1 38587047 38587287 -204077066 + L1MA5A LINE L1 6063 6297 0 1395 122 0 9 chr1 38588368 38588598 -204075755 + L1MA2 LINE L1 6077 6304 0 1456 180 4 8 chr1 38588816 38589077 -204075276 + AluJo SINE Alu 1 260 -52 2273 84 0 3 chr1 38589143 38589453 -204074900 - AluSg SINE Alu -1 309 1 920 196 0 11 chr1 38590023 38590202 -204074151 - AluJo SINE Alu -33 279 103 1853 111 4 11 chr1 38590409 38590679 -204073674 + AluSx SINE Alu 26 293 -19 180 0 0 0 chr1 38590680 38590700 -204073653 + (GA)n Simple_repeat Simple_repeat 1 20 0 733 154 0 0 chr1 38590701 38590811 -204073542 - AluJo SINE Alu -201 111 2 190 300 16 29 chr1 38591092 38591187 -204073166 + MIR SINE MIR 86 183 -25 1192 186 116 25 chr1 38592098 38592373 -204071980 + AluJo SINE Alu 1 300 -2 351 284 68 49 chr1 38592617 38592779 -204071574 + MIR SINE MIR 84 248 -14 254 143 0 82 chr1 38592873 38592922 -204071431 + L2 LINE L2 3210 3254 -18 528 233 70 8 chr1 38593801 38593930 -204070423 + MIR SINE MIR 124 260 -2 440 313 26 57 chr1 38594874 38595066 -204069287 - MIR3 SINE MIR -3 205 20 927 198 24 0 chr1 38595235 38595402 -204068951 - FAM SINE Alu 0 175 5 2055 114 3 0 chr1 38595899 38596189 -204068164 - AluSx SINE Alu -21 291 1 366 337 84 16 chr1 38598240 38598430 -204065923 + MIR SINE MIR 54 256 -6 597 144 0 0 chr1 38599346 38599436 -204064917 - AluSg/x SINE Alu -14 298 209 1123 68 14 0 chr1 38599437 38599585 -204064768 + AluY SINE Alu 150 299 -12 1622 96 0 5 chr1 38599587 38599807 -204064546 - AluSq SINE Alu -94 219 1 38 22 0 0 chr1 38599837 38599882 -204064471 + AT_rich Low_complexity Low_complexity 1 45 0 1886 128 38 0 chr1 38600568 38600856 -204063497 + AluSg SINE Alu 1 299 -11 252 86 0 0 chr1 38601652 38601687 -204062666 + (A)n Simple_repeat Simple_repeat 1 35 0 183 42 0 0 chr1 38603007 38603031 -204061322 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2200 119 0 0 chr1 38603312 38603622 -204060731 + AluSx SINE Alu 1 310 -2 2160 96 0 3 chr1 38603623 38603914 -204060439 + AluSc SINE Alu 2 291 -18 2328 86 0 0 chr1 38604322 38604624 -204059729 + AluY SINE Alu 1 302 -9 1998 128 0 3 chr1 38604689 38604979 -204059374 - AluSx SINE Alu -23 289 1 622 143 151 0 chr1 38605628 38605754 -204058599 + MER3 DNA MER1_type 2 146 -63 602 110 0 11 chr1 38605806 38605897 -204058456 + MER3 DNA MER1_type 120 209 0 321 135 0 19 chr1 38605853 38605905 -204058448 - MER3 DNA MER1_type -119 90 40 * 960 133 51 6 chr1 38605966 38606124 -204058229 + AluJb SINE Alu 142 306 -6 1651 166 32 7 chr1 38606215 38606499 -204057854 + AluJb SINE Alu 1 291 -21 573 232 209 11 chr1 38606500 38606677 -204057676 - MIR SINE MIR -49 213 2 27 0 0 26 chr1 38607420 38607438 -204056915 + AT_rich Low_complexity Low_complexity 1 18 -19 324 0 0 0 chr1 38607438 38607474 -204056879 + (TA)n Simple_repeat Simple_repeat 2 37 0 27 0 0 26 chr1 38607474 38607493 -204056860 + AT_rich Low_complexity Low_complexity 18 37 0 221 193 193 12 chr1 38608026 38608109 -204056244 - MIR SINE MIR -56 206 109 1884 168 0 7 chr1 38608379 38608682 -204055671 + AluJb SINE Alu 12 312 0 2216 110 3 23 chr1 38608728 38609036 -204055317 + AluSp SINE Alu 1 302 -11 4435 133 27 1 chr1 38609136 38609842 -204054511 + L1MC1 LINE L1 5595 6318 -15 1626 180 30 20 chr1 38610580 38610885 -204053468 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr1 38610935 38610958 -204053395 + AT_rich Low_complexity Low_complexity 1 23 0 293 250 0 12 chr1 38611329 38611413 -204052940 - MIR SINE MIR -5 257 175 1943 157 0 3 chr1 38611453 38611753 -204052600 + AluJb SINE Alu 1 299 -13 22 0 0 0 chr1 38611753 38611775 -204052578 + AT_rich Low_complexity Low_complexity 1 22 0 1986 155 0 10 chr1 38611777 38612087 -204052266 + AluSx SINE Alu 1 307 -5 187 309 138 11 chr1 38613109 38613203 -204051150 - MIR SINE MIR -64 144 39 1861 171 0 7 chr1 38613216 38613520 -204050833 - AluJo SINE Alu -10 302 1 1639 142 21 98 chr1 38613616 38613819 -204050534 - AluJo SINE Alu -1 311 143 2418 88 3 0 chr1 38613819 38614115 -204050238 + AluSp SINE Alu 1 297 -16 1639 142 21 98 chr1 38614115 38614248 -204050105 - AluJo SINE Alu -169 143 1 2585 68 0 3 chr1 38614390 38614699 -204049654 + AluSc SINE Alu 1 308 -1 2145 135 72 3 chr1 38614759 38615122 -204049231 + MLT1B LTR MaLR 1 388 -2 1943 162 12 17 chr1 38615365 38615711 -204048642 - MER2 DNA MER2_type 0 344 1 272 285 132 14 chr1 38616702 38616846 -204047507 + L1ME4a LINE L1 5949 6109 -12 22 56 0 0 chr1 38616870 38616906 -204047447 + AT_rich Low_complexity Low_complexity 1 36 0 281 301 107 0 chr1 38617237 38617340 -204047013 + MIR SINE MIR 30 143 -65 2502 84 0 0 chr1 38617813 38618124 -204046229 + AluSx SINE Alu 1 311 -1 426 257 189 6 chr1 38618718 38618893 -204045460 - MIR SINE MIR -38 224 18 458 17 17 0 chr1 38618894 38618953 -204045400 + (CTATA)n Simple_repeat Simple_repeat 4 63 0 311 289 113 25 chr1 38619124 38619283 -204045070 - MIR SINE MIR -26 236 64 2081 101 11 3 chr1 38619769 38620055 -204044298 + AluSp SINE Alu 20 307 -6 2394 48 65 0 chr1 38620792 38621086 -204043267 + AluSp SINE Alu 1 313 0 1719 94 37 4 chr1 38621449 38621694 -204042659 + AluSg SINE Alu 54 306 -4 363 226 26 0 chr1 38621694 38621809 -204042544 + L1ME1 LINE L1 5325 5442 -722 2297 95 0 3 chr1 38621961 38622257 -204042096 + AluSg SINE Alu 2 296 -14 2248 94 7 7 chr1 38622336 38622633 -204041720 + AluSq SINE Alu 1 297 -16 180 0 0 0 chr1 38623346 38623366 -204040987 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr1 38623595 38623616 -204040737 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 38623659 38623682 -204040671 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 461 163 12 0 chr1 38623688 38623768 -204040585 - FRAM/FAM SINE Alu -96 80 1 972 170 15 78 chr1 38623971 38624177 -204040176 - MER58A DNA MER1_type -31 193 1 203 327 93 0 chr1 38624188 38624295 -204040058 + MIR SINE MIR 30 146 -62 1279 250 80 37 chr1 38624606 38625042 -204039311 + LTR16A1 LTR ERVL 1 455 -2 622 294 52 45 chr1 38625047 38625336 -204039017 + HERV16 LTR ERVL 2 292 -4704 1266 182 101 12 chr1 38625367 38625625 -204038728 + AluJo SINE Alu 1 281 -31 261 139 0 0 chr1 38625641 38625684 -204038669 + (GA)n Simple_repeat Simple_repeat 2 44 0 1094 103 0 20 chr1 38625732 38625878 -204038475 + AluY SINE Alu 1 143 -168 2361 57 0 4 chr1 38625879 38626185 -204038168 + AluY SINE Alu 1 305 0 1518 224 55 24 chr1 38626185 38626492 -204037861 + L1MEc LINE L1 1888 2215 -4181 2512 85 0 0 chr1 38626492 38626798 -204037555 + AluY SINE Alu 1 306 -5 1518 224 55 24 chr1 38626798 38626941 -204037412 + L1MEc LINE L1 2215 2352 -4044 1464 190 114 49 chr1 38626948 38627396 -204036957 + L1ME1 LINE L1 5685 6161 -5 635 289 108 23 chr1 38627405 38627558 -204036795 + ERVL LTR ERVL 2306 2445 -3319 2184 104 7 0 chr1 38627558 38627866 -204036487 + AluSx SINE Alu 2 311 0 635 289 108 23 chr1 38627866 38628064 -204036289 + ERVL LTR ERVL 2445 2688 -3076 307 279 112 52 chr1 38628423 38628710 -204035643 + MER89-int LTR ERV1 6365 6668 -133 713 322 119 4 chr1 38629364 38629774 -204034579 + ERVL LTR ERVL 3027 3547 -2217 451 310 105 36 chr1 38629787 38630119 -204034234 + ERVL LTR ERVL 4552 5262 -90 940 230 97 53 chr1 38630235 38630586 -204033767 + LTR16A1 LTR ERVL 48 457 0 643 269 19 64 chr1 38631678 38631787 -204032566 + MIR SINE MIR 1 113 -149 2107 131 0 0 chr1 38631787 38632078 -204032275 - AluJo SINE Alu -21 291 1 643 269 19 64 chr1 38632078 38632232 -204032121 + MIR SINE MIR 113 252 -10 2418 76 0 7 chr1 38632684 38632988 -204031365 + AluSg1 SINE Alu 1 302 -7 183 162 0 0 chr1 38634664 38634701 -204029652 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 249 250 26 40 chr1 38634739 38634815 -204029538 - L2 LINE L2 -202 3070 2996 597 226 90 66 chr1 38634815 38635027 -204029326 + MIR SINE MIR 2 218 -44 501 184 55 0 chr1 38635252 38635361 -204028992 - L1MD3 LINE L1 0 7995 7881 188 369 50 14 chr1 38635376 38635517 -204028836 - L2 LINE L2 -575 2739 2594 805 258 13 26 chr1 38636001 38636234 -204028119 + MIR SINE MIR 3 232 -30 226 321 71 18 chr1 38636306 38636418 -204027935 + L2 LINE L2 3188 3305 -8 1576 180 14 34 chr1 38637141 38637283 -204027070 + AluJo SINE Alu 1 144 -168 1499 160 63 4 chr1 38637283 38637551 -204026802 + AluJb SINE Alu 14 297 -15 1576 180 14 34 chr1 38637551 38637702 -204026651 + AluJo SINE Alu 144 288 -24 243 0 0 0 chr1 38637703 38637717 -204026636 + (TG)n Simple_repeat Simple_repeat 1 41 0 243 0 0 0 chr1 38637717 38637744 -204026609 + (TG)n Simple_repeat Simple_repeat 2 28 0 454 284 50 11 chr1 38638191 38638392 -204025961 - MIR3 SINE MIR -53 209 3 328 287 65 0 chr1 38638984 38639092 -204025261 + MIR SINE MIR 63 177 -85 440 131 0 0 chr1 38639094 38639155 -204025198 + AluS SINE Alu 2 62 -256 348 43 0 0 chr1 38640028 38640074 -204024279 + (TG)n Simple_repeat Simple_repeat 1 46 0 1981 128 10 20 chr1 38640075 38640379 -204023974 - AluJo SINE Alu -9 303 3 204 256 0 0 chr1 38640766 38640809 -204023544 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 2360 71 0 3 chr1 38640969 38641281 -204023072 - AluY SINE Alu 0 311 1 2182 225 141 82 chr1 38641358 38641485 -204022868 - HAL1 LINE L1 -5 2502 2384 2185 124 3 7 chr1 38641485 38641610 -204022743 + AluSx SINE Alu 1 125 -187 225 0 0 0 chr1 38641610 38641635 -204022718 + (CA)n Simple_repeat Simple_repeat 2 26 0 2185 124 3 7 chr1 38641635 38641816 -204022537 + AluSx SINE Alu 125 306 -6 2182 225 141 82 chr1 38641816 38642469 -204021884 - HAL1 LINE L1 -123 2384 1771 1849 155 7 10 chr1 38642469 38642766 -204021587 + AluSx SINE Alu 1 296 -16 2182 225 141 82 chr1 38642766 38642856 -204021497 - HAL1 LINE L1 -736 1771 1688 2354 106 0 0 chr1 38642856 38643159 -204021194 - AluSc SINE Alu -6 303 1 2182 225 141 82 chr1 38643159 38643475 -204020878 - HAL1 LINE L1 -819 1688 1244 1965 126 4 14 chr1 38643488 38643815 -204020538 - AluSx SINE Alu 0 334 11 305 278 110 47 chr1 38643831 38644022 -204020331 - HAL1 LINE L1 -1811 696 494 852 216 78 85 chr1 38644062 38644209 -204020144 - AluJo SINE Alu -31 281 134 2126 144 0 7 chr1 38644209 38644514 -204019839 - AluSx SINE Alu -9 303 1 189 0 0 0 chr1 38644514 38644535 -204019818 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2106 110 4 4 chr1 38644535 38644816 -204019537 - AluSc SINE Alu -28 281 1 852 216 78 85 chr1 38644816 38644949 -204019404 - AluJo SINE Alu -175 137 1 658 267 158 43 chr1 38644949 38645372 -204018981 - HAL1 LINE L1 -2034 473 2 1169 210 107 27 chr1 38646711 38647011 -204017342 + MER33 DNA MER1_type 1 324 0 198 0 0 0 chr1 38647740 38647762 -204016591 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 577 234 450 19 chr1 38648127 38648311 -204016042 - L1ME3 LINE L1 -49 6121 6017 2386 71 7 10 chr1 38648311 38648483 -204015870 - AluSp SINE Alu -6 307 135 2417 76 0 16 chr1 38648483 38648787 -204015566 - AluY SINE Alu -12 299 1 2386 71 7 10 chr1 38648787 38648922 -204015431 - AluSp SINE Alu -178 135 1 577 234 450 19 chr1 38648922 38648975 -204015378 - L1ME3 LINE L1 -153 6017 5856 1655 164 30 0 chr1 38649106 38649368 -204014985 + AluJb SINE Alu 11 280 -32 248 147 0 107 chr1 38649419 38649494 -204014859 + (TTCTCC)n Simple_repeat Simple_repeat 6 72 0 1857 145 68 70 chr1 38649638 38649815 -204014538 + MLT1C LTR MaLR 3 179 -211 324 48 0 0 chr1 38649815 38649857 -204014496 + (CA)n Simple_repeat Simple_repeat 2 43 0 1857 145 68 70 chr1 38649857 38650083 -204014270 + MLT1C LTR MaLR 179 325 -65 468 0 0 0 chr1 38650083 38650135 -204014218 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 2221 123 7 0 chr1 38650145 38650447 -204013906 - AluSx SINE Alu -7 305 2 481 193 14 7 chr1 38650448 38650588 -204013765 + CT-rich Low_complexity Low_complexity 2 142 0 1782 163 7 10 chr1 38650607 38650913 -204013440 - AluJb SINE Alu -2 310 6 299 236 28 0 chr1 38650919 38650991 -204013362 + MLT1C LTR MaLR 394 467 0 205 240 142 0 chr1 38652036 38652125 -204012228 + MIR SINE MIR 44 153 -62 2252 121 45 37 chr1 38652177 38652308 -204012045 + L1MB3 LINE L1 5776 5905 -278 2366 83 0 3 chr1 38652308 38652610 -204011743 - AluSx SINE Alu -11 301 1 2252 121 45 37 chr1 38652610 38652882 -204011471 + L1MB3 LINE L1 5905 6182 -1 196 329 188 0 chr1 38653098 38653268 -204011085 + MIR SINE MIR 1 202 -60 2112 127 0 19 chr1 38653270 38653577 -204010776 + AluSx SINE Alu 1 301 -11 2518 74 0 10 chr1 38653584 38653896 -204010457 + AluY SINE Alu 1 309 -2 1531 154 81 11 chr1 38653904 38654176 -204010177 + AluJb SINE Alu 1 291 -21 3249 147 4 0 chr1 38654385 38654854 -204009499 + MER70A LTR ERVL 1 471 -1 632 138 9 0 chr1 38654856 38654972 -204009381 + CT-rich Low_complexity Low_complexity 1 117 0 251 238 48 0 chr1 38655145 38655208 -204009145 + MIR SINE MIR 119 184 -78 943 84 8 0 chr1 38655269 38655388 -204008965 + AluSq/x SINE Alu 1 120 -193 373 309 168 25 chr1 38655415 38656125 -204008228 - L2 LINE L2 -778 2536 1726 2078 136 0 0 chr1 38656180 38656474 -204007879 + AluSx SINE Alu 1 294 -18 748 145 0 17 chr1 38656782 38656899 -204007454 - AluJo SINE Alu -176 136 22 307 228 0 0 chr1 38656899 38656956 -204007397 - AluJ/FLAM SINE Alu -245 57 1 2337 90 3 0 chr1 38657011 38657300 -204007053 - AluSp SINE Alu -20 293 4 39 38 0 0 chr1 38657389 38657442 -204006911 + AT_rich Low_complexity Low_complexity 1 53 0 615 103 11 0 chr1 38657469 38657556 -204006797 - AluSq/x SINE Alu -208 104 17 1790 113 0 0 chr1 38658549 38658789 -204005564 - AluSg/x SINE Alu -6 306 67 2372 80 0 23 chr1 38658789 38659089 -204005264 - AluY SINE Alu -18 293 1 760 310 76 53 chr1 38659090 38659412 -204004941 + L2 LINE L2 1384 1697 -1617 1684 169 0 60 chr1 38659412 38659731 -204004622 + AluJo SINE Alu 1 300 -12 760 310 76 53 chr1 38659731 38660092 -204004261 + L2 LINE L2 1697 2083 -1231 516 88 0 0 chr1 38660156 38660236 -204004117 - Alu SINE Alu -1 310 231 1961 119 31 3 chr1 38660236 38660522 -204003831 + AluSq SINE Alu 14 307 -6 2517 69 0 22 chr1 38660525 38660842 -204003511 + AluY SINE Alu 1 310 -1 326 80 20 0 chr1 38660895 38660945 -204003408 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1357 198 81 34 chr1 38660958 38661083 -204003270 + AluJo SINE Alu 1 119 -193 2131 134 0 3 chr1 38661083 38661382 -204002971 - AluJb SINE Alu -14 298 1 1357 198 81 34 chr1 38661382 38661554 -204002799 + AluJo SINE Alu 119 312 0 2370 109 3 0 chr1 38661558 38661870 -204002483 + AluSq SINE Alu 1 313 0 453 314 20 49 chr1 38661877 38662207 -204002146 + L2 LINE L2 2723 3037 -235 332 298 165 46 chr1 38662549 38662767 -204001586 - MIR SINE MIR -2 260 17 263 252 45 81 chr1 38663535 38663646 -204000707 - MIR SINE MIR -70 192 86 702 224 6 7 chr1 38663724 38663902 -204000451 - L1MD3 LINE L1 -1 7994 7606 1946 157 0 0 chr1 38664517 38664826 -203999527 + AluSx SINE Alu 1 309 0 2022 106 50 36 chr1 38664870 38665171 -203999182 + AluSg SINE Alu 1 305 -5 894 156 21 0 chr1 38665756 38665897 -203998456 + FRAM SINE Alu 22 165 -11 681 134 183 49 chr1 38666174 38666338 -203998015 + AluJb SINE Alu 127 312 0 325 257 90 77 chr1 38666363 38666415 -203997938 - L2 LINE L2 -1284 2030 1980 1727 169 10 36 chr1 38666415 38666723 -203997630 + AluJo SINE Alu 5 304 -8 325 257 90 77 chr1 38666723 38666758 -203997595 - L2 LINE L2 -1334 1980 1947 1974 143 17 10 chr1 38666758 38667058 -203997295 + AluSx SINE Alu 1 302 -10 325 257 90 77 chr1 38667058 38667191 -203997162 - L2 LINE L2 -1367 1947 1806 219 69 0 0 chr1 38667814 38667843 -203996510 + (GA)n Simple_repeat Simple_repeat 2 30 0 2322 111 0 0 chr1 38668055 38668362 -203995991 + AluY SINE Alu 1 307 -4 561 239 0 0 chr1 38668447 38668556 -203995797 + FLAM_C SINE Alu 1 109 -34 251 254 0 0 chr1 38668561 38668620 -203995733 + (CAGA)n Simple_repeat Simple_repeat 3 61 0 1955 129 42 32 chr1 38668672 38668981 -203995372 - AluSx SINE Alu 0 312 1 1920 125 68 0 chr1 38668985 38669266 -203995087 - AluJb SINE Alu -1 311 12 2102 153 0 3 chr1 38669305 38669618 -203994735 - AluJb SINE Alu 0 312 1 629 133 0 0 chr1 38670457 38670555 -203993798 + FLAM_C SINE Alu 14 111 -32 414 0 0 0 chr1 38670570 38670616 -203993737 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 1017 133 10 71 chr1 38670985 38671181 -203993172 - L1M3 LINE L1 -540 5643 5460 1021 167 65 57 chr1 38671318 38671563 -203992790 + MLT2B1 LTR ERVL 1 247 -273 1756 126 36 76 chr1 38671697 38671851 -203992502 + AluJo SINE Alu 1 139 -173 2289 104 0 7 chr1 38671851 38672159 -203992194 + AluSx SINE Alu 3 308 -4 1756 126 36 76 chr1 38672159 38672306 -203992047 + AluJo SINE Alu 139 290 -22 2506 79 0 3 chr1 38672609 38672912 -203991441 - AluSq SINE Alu -11 302 1 1801 159 13 60 chr1 38672960 38673343 -203991010 + MLT1A1 LTR MaLR 1 365 0 2050 124 0 0 chr1 38673386 38673653 -203990700 + AluSx SINE Alu 1 267 -45 675 200 74 0 chr1 38673695 38673830 -203990523 - AluJb SINE Alu -21 291 147 2348 89 27 0 chr1 38673847 38674139 -203990214 - AluSx SINE Alu -12 300 1 1103 273 63 10 chr1 38674490 38674889 -203989464 - LTR16A LTR ERVL -6 444 25 249 314 143 56 chr1 38674911 38675233 -203989120 + L2 LINE L2 2287 2636 -678 21 0 0 0 chr1 38675462 38675483 -203988870 + AT_rich Low_complexity Low_complexity 1 21 0 601 292 127 9 chr1 38675499 38675821 -203988532 + L1ME4a LINE L1 5563 5922 -199 2547 73 0 0 chr1 38676037 38676340 -203988013 + AluY SINE Alu 2 304 -7 184 128 21 21 chr1 38676434 38676481 -203987872 + (TATAA)n Simple_repeat Simple_repeat 1 47 0 2237 166 15 20 chr1 38676483 38676941 -203987412 - L1MB8 LINE L1 -336 5842 5387 971 169 12 0 chr1 38676946 38677106 -203987247 - FRAM SINE Alu 0 166 5 316 228 55 55 chr1 38677169 38677314 -203987039 - L1ME4a LINE L1 -13 6108 5964 229 232 49 37 chr1 38677412 38677494 -203986859 - L1ME4a LINE L1 -380 5786 5704 555 239 250 11 chr1 38677638 38677826 -203986527 - MIR SINE MIR -18 244 12 2165 113 51 20 chr1 38677969 38678322 -203986031 + THE1B LTR MaLR 1 364 0 276 275 156 24 chr1 38678399 38678610 -203985743 + L2 LINE L2 2641 2879 -435 2357 70 40 3 chr1 38678741 38679040 -203985313 + AluY SINE Alu 2 311 0 600 206 91 43 chr1 38679188 38679441 -203984912 - L1MC5 LINE L1 -36 7925 7661 235 209 16 126 chr1 38679473 38679714 -203984639 - L1MC4a LINE L1 0 7890 7624 1435 172 145 14 chr1 38679714 38680010 -203984343 + MER1B DNA MER1_type 1 335 -2 235 209 16 126 chr1 38680010 38680024 -203984329 - L1MC4a LINE L1 -266 7624 7674 1978 134 0 54 chr1 38680024 38680337 -203984016 - AluJo SINE Alu -16 296 1 235 209 16 126 chr1 38680337 38680406 -203983947 - L1MC4a LINE L1 -215 7675 7600 279 0 0 0 chr1 38680406 38680437 -203983916 + (TC)n Simple_repeat Simple_repeat 2 32 0 1303 159 14 5 chr1 38680477 38680684 -203983669 - AluJo SINE Alu -103 209 1 595 212 59 35 chr1 38680684 38680854 -203983499 - L1MC4 LINE L1 -408 7634 7461 271 363 0 0 chr1 38680974 38681054 -203983299 + L2 LINE L2 3141 3220 -52 206 146 0 24 chr1 38681281 38681322 -203983031 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 358 267 30 61 chr1 38681867 38682032 -203982321 + MER20B DNA MER1_type 17 176 -607 258 105 0 0 chr1 38682086 38682124 -203982229 + (CA)n Simple_repeat Simple_repeat 1 38 0 253 274 12 12 chr1 38682211 38682295 -203982058 + MIR SINE MIR 65 148 -114 1350 174 0 5 chr1 38682297 38682510 -203981843 + AluJo SINE Alu 1 212 -100 658 135 19 0 chr1 38682519 38682657 -203981696 + AluJb SINE Alu 179 318 0 2059 104 87 0 chr1 38682749 38683036 -203981317 + AluSx SINE Alu 1 312 0 1921 135 0 38 chr1 38683548 38683977 -203980376 + AluSx SINE Alu 5 422 0 238 261 29 0 chr1 38684265 38684334 -203980019 + MIR SINE MIR 118 188 -74 1733 128 10 52 chr1 38684666 38684954 -203979399 + AluJo SINE Alu 1 276 -36 2384 87 3 0 chr1 38684961 38685249 -203979104 - AluSx SINE Alu -21 291 3 2035 105 0 0 chr1 38685535 38685802 -203978551 - AluSx SINE Alu -45 267 1 22 0 0 0 chr1 38686705 38686727 -203977626 + GC_rich Low_complexity Low_complexity 1 22 0 601 237 7 26 chr1 38687851 38688003 -203976350 - MIR SINE MIR 0 262 114 2360 113 7 0 chr1 38688819 38689121 -203975232 - AluSx SINE Alu -8 304 1 1458 172 92 8 chr1 38689258 38689520 -203974833 - AluJo SINE Alu -28 284 1 2120 116 14 7 chr1 38690106 38690400 -203973953 + AluSx SINE Alu 1 296 -16 998 257 16 8 chr1 38690475 38690720 -203973633 - MIR SINE MIR -1 261 15 2137 120 7 3 chr1 38690767 38691058 -203973295 + AluSx SINE Alu 1 292 -20 2029 72 91 0 chr1 38691291 38691588 -203972765 + AluY SINE Alu 2 322 0 1845 156 13 22 chr1 38691593 38691908 -203972445 + AluJo SINE Alu 1 312 0 369 184 30 0 chr1 38691908 38691986 -203972367 - MER2 DNA MER2_type -159 80 1 2315 108 13 0 chr1 38692087 38692394 -203971959 - AluSq SINE Alu -2 311 1 200 230 92 35 chr1 38692855 38692942 -203971411 - MIR3 SINE MIR -19 189 98 308 265 214 13 chr1 38695267 38695501 -203968852 + L2 LINE L2 1979 2259 -1055 2200 97 0 0 chr1 38695558 38695827 -203968526 + AluSx SINE Alu 3 271 -41 211 264 0 0 chr1 38696013 38696066 -203968287 + L2 LINE L2 2597 2649 -665 190 250 14 14 chr1 38696134 38696206 -203968147 + L2 LINE L2 2791 2862 -452 2687 61 0 0 chr1 38698320 38698631 -203965722 + AluSx SINE Alu 1 311 -1 2501 76 7 0 chr1 38699284 38699587 -203964766 - AluSg SINE Alu -5 305 1 241 274 14 14 chr1 38699927 38700000 -203964353 + MLT1K LTR MaLR 516 588 0 2361 107 7 0 chr1 38700229 38700529 -203963824 - AluSx SINE Alu -10 302 1 2356 115 0 6 chr1 38700698 38701011 -203963342 + AluSx SINE Alu 1 311 -1 2178 132 16 0 chr1 38701088 38701391 -203962962 - AluSx SINE Alu -4 308 1 2158 141 3 0 chr1 38701473 38701772 -203962581 - AluSx SINE Alu -12 300 1 418 312 132 55 chr1 38702423 38702555 -203961798 - L2 LINE L2 0 3272 3152 2189 123 0 0 chr1 38702555 38702840 -203961513 + AluSx SINE Alu 6 290 -22 418 312 132 55 chr1 38702840 38702948 -203961405 - L2 LINE L2 -120 3152 3054 768 168 0 8 chr1 38702948 38703079 -203961274 - FLAM_C SINE Alu -2 131 2 418 312 132 55 chr1 38703079 38703334 -203961019 - L2 LINE L2 -218 3054 2742 207 0 0 0 chr1 38704994 38705017 -203959336 + (A)n Simple_repeat Simple_repeat 1 23 0 1289 241 126 0 chr1 38705981 38706346 -203958007 - LTR16A LTR ERVL -6 444 34 312 248 111 8 chr1 38706527 38706644 -203957709 - MIR SINE MIR -6 256 128 1964 164 13 0 chr1 38706919 38707223 -203957130 - AluJb SINE Alu -4 308 1 540 0 0 0 chr1 38707763 38707823 -203956530 + (CA)n Simple_repeat Simple_repeat 2 61 0 251 273 128 48 chr1 38708668 38708825 -203955528 - MIR SINE MIR -53 209 51 337 307 32 109 chr1 38708913 38709103 -203955250 - L2 LINE L2 -2 3270 3108 2168 99 6 78 chr1 38709103 38709436 -203954917 + AluSx SINE Alu 1 309 -3 337 307 32 109 chr1 38709436 38709528 -203954825 - L2 LINE L2 -164 3108 3010 1265 117 16 21 chr1 38709529 38709717 -203954636 + AluSg/x SINE Alu 108 294 -18 2489 91 0 0 chr1 38709761 38710070 -203954283 + AluSg SINE Alu 1 309 -1 237 284 26 86 chr1 38710086 38710202 -203954151 - L2 LINE L2 -218 3054 2946 975 322 80 5 chr1 38710281 38710719 -203953634 - L2 LINE L2 -519 2795 2325 2262 110 0 10 chr1 38711800 38712109 -203952244 - AluSx SINE Alu -6 306 1 734 154 73 0 chr1 38712163 38712286 -203952067 - FLAM_C SINE Alu 0 133 2 1666 167 17 14 chr1 38712538 38712826 -203951527 + AluJo SINE Alu 1 289 -23 2189 123 10 3 chr1 38713239 38713547 -203950806 + AluSx SINE Alu 1 310 -2 2260 108 7 0 chr1 38714267 38714564 -203949789 + AluSx SINE Alu 1 299 -13 2195 122 7 3 chr1 38714779 38715082 -203949271 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr1 38715678 38715714 -203948639 + AT_rich Low_complexity Low_complexity 1 36 0 251 330 43 11 chr1 38716476 38716570 -203947783 + MIR SINE MIR 2 98 -164 243 0 0 0 chr1 38716955 38716982 -203947371 + (TA)n Simple_repeat Simple_repeat 2 28 0 2313 101 0 0 chr1 38717642 38717940 -203946413 - AluSg SINE Alu -12 298 1 24 67 0 0 chr1 38718459 38718504 -203945849 + AT_rich Low_complexity Low_complexity 1 45 0 405 197 13 13 chr1 38718507 38718582 -203945771 + Tigger5 DNA MER2_type 4 78 -2245 234 189 0 0 chr1 38718582 38718619 -203945734 - Tigger5 DNA MER2_type -3 2320 2284 351 200 0 0 chr1 38718630 38718690 -203945663 + Tigger5 DNA MER2_type 2264 2323 0 578 242 112 33 chr1 38718700 38718915 -203945438 - MIR SINE MIR -18 244 13 2343 109 0 0 chr1 38719256 38719560 -203944793 - AluSx SINE Alu -8 304 1 375 327 26 7 chr1 38719752 38719905 -203944448 + L3 LINE CR1 690 845 -732 366 264 37 61 chr1 38719912 38720075 -203944278 + L1ME4a LINE L1 5788 5946 -175 1966 114 18 0 chr1 38720182 38720455 -203943898 - AluSq SINE Alu -33 280 3 2479 74 0 7 chr1 38720534 38720843 -203943510 + AluSc SINE Alu 1 307 -2 1273 134 10 5 chr1 38720843 38721037 -203943316 + AluJo SINE Alu 2 196 -116 617 197 85 37 chr1 38721092 38721214 -203943139 + MIR SINE MIR 48 184 -78 2015 105 7 62 chr1 38721214 38721519 -203942834 - AluSx SINE Alu -23 289 2 617 197 85 37 chr1 38721519 38721584 -203942769 + MIR SINE MIR 184 244 -18 1899 102 3 122 chr1 38721585 38721928 -203942425 - AluY SINE Alu -9 302 1 1591 204 14 0 chr1 38722469 38722763 -203941590 - AluJb SINE Alu -14 298 1 3925 144 67 22 chr1 38722825 38723154 -203941199 - L1MB2 LINE L1 -2 6169 5856 1709 163 46 7 chr1 38723154 38723437 -203940916 - AluJb SINE Alu -18 294 1 3925 144 67 22 chr1 38723437 38723654 -203940699 - L1MB2 LINE L1 -315 5856 5650 1953 85 12 8 chr1 38723654 38723912 -203940441 - AluSq SINE Alu -12 301 43 3925 144 67 22 chr1 38723912 38724126 -203940227 - L1MB2 LINE L1 -521 5650 5374 464 211 61 9 chr1 38724527 38724641 -203939712 - L2 LINE L2 0 3313 3194 199 234 31 16 chr1 38724687 38724751 -203939602 - MIR SINE MIR -10 252 188 2140 85 13 23 chr1 38724781 38725086 -203939267 - AluSx SINE Alu -10 302 1 1798 170 13 10 chr1 38725228 38725539 -203938814 - AluJb SINE Alu 0 312 1 2654 46 0 0 chr1 38725882 38726184 -203938169 + AluY SINE Alu 1 302 -9 2428 81 7 3 chr1 38727659 38727966 -203936387 - AluSg SINE Alu -2 308 1 805 119 0 32 chr1 38729053 38729179 -203935174 + FLAM_C SINE Alu 2 123 -10 198 0 0 0 chr1 38729190 38729212 -203935141 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2090 135 30 0 chr1 38729238 38729534 -203934819 - AluSx SINE Alu -7 305 1 24 53 0 0 chr1 38729793 38729831 -203934522 + AT_rich Low_complexity Low_complexity 1 38 0 309 242 0 0 chr1 38730102 38730193 -203934160 + CT-rich Low_complexity Low_complexity 1 91 0 917 246 150 24 chr1 38730663 38731131 -203933222 + L1MC/D LINE L1 5291 5817 -1991 2322 117 0 0 chr1 38731139 38731446 -203932907 + AluSg SINE Alu 1 307 -3 935 261 14 0 chr1 38731473 38731688 -203932665 + MIR SINE MIR 28 245 -17 1837 158 7 10 chr1 38731929 38732232 -203932121 - AluJo SINE Alu -10 302 1 2075 109 0 7 chr1 38733187 38733461 -203930892 - AluSx SINE Alu -13 299 28 1653 174 3 30 chr1 38733945 38734108 -203930245 - AluJb SINE Alu -22 290 137 2337 98 0 20 chr1 38734108 38734414 -203929939 - AluSx SINE Alu -12 300 1 1653 174 3 30 chr1 38734414 38734548 -203929805 - AluJb SINE Alu -175 137 1 1744 160 18 7 chr1 38734550 38734831 -203929522 - AluJo SINE Alu -12 300 17 390 377 10 5 chr1 38735631 38735830 -203928523 + L2 LINE L2 2630 2829 -485 343 272 192 90 chr1 38735874 38736197 -203928156 + L2 LINE L2 2917 3272 0 264 273 210 21 chr1 38736347 38736490 -203927863 + MIR SINE MIR 83 252 -10 927 178 0 41 chr1 38737005 38737174 -203927179 - AluJb SINE Alu -4 308 147 2277 104 0 13 chr1 38737204 38737502 -203926851 + AluSq SINE Alu 1 294 -19 253 313 70 50 chr1 38737576 38737640 -203926713 - MIR SINE MIR -56 206 145 774 179 8 15 chr1 38737640 38737774 -203926579 - FLAM_A SINE Alu 0 133 1 253 313 70 50 chr1 38737774 38737910 -203926443 - MIR SINE MIR -117 145 2 290 241 72 0 chr1 38738000 38738083 -203926270 - L2 LINE L2 0 3272 3184 202 293 143 23 chr1 38738323 38738456 -203925897 + L2 LINE L2 3164 3312 -1 2416 99 0 0 chr1 38738671 38738973 -203925380 - AluSg SINE Alu -8 302 1 366 301 114 8 chr1 38740207 38740330 -203924023 + MER5A DNA MER1_type 1 136 -53 482 187 77 0 chr1 38740331 38740422 -203923931 - Tigger7 DNA MER2_type 0 2491 2394 * 550 122 12 0 chr1 38740421 38740503 -203923850 - Tigger7 DNA MER2_type -466 267 185 1920 158 3 22 chr1 38742624 38742941 -203921412 - AluJb SINE Alu -1 311 1 1695 187 57 82 chr1 38744327 38744836 -203919517 + L1MC5 LINE L1 6957 7452 -509 2338 100 3 3 chr1 38744836 38745136 -203919217 - AluSx SINE Alu -12 300 1 1695 187 57 82 chr1 38745136 38745203 -203919150 + L1MC5 LINE L1 7452 7519 -442 417 228 6 11 chr1 38745214 38745290 -203919063 + (TA)n Simple_repeat Simple_repeat 1 76 -103 2359 85 3 0 chr1 38745290 38745585 -203918768 - AluSp SINE Alu -17 296 1 417 228 6 11 chr1 38745585 38745594 -203918759 + (TA)n Simple_repeat Simple_repeat 76 84 -95 2228 105 27 0 chr1 38745594 38745888 -203918465 - AluSq SINE Alu -11 302 1 417 228 6 11 chr1 38745888 38745981 -203918372 + (TA)n Simple_repeat Simple_repeat 84 179 0 889 199 141 32 chr1 38746086 38746293 -203918060 + L1MC5 LINE L1 7610 7856 -105 2099 134 55 6 chr1 38746293 38746637 -203917716 + MER46B DNA MER2_type 1 236 0 889 199 141 32 chr1 38746637 38746706 -203917647 + L1MC5 LINE L1 7856 7916 -45 2356 102 0 0 chr1 38746929 38747222 -203917131 + AluSg SINE Alu 1 293 -17 1534 132 36 64 chr1 38747253 38747533 -203916820 - AluJb SINE Alu -16 296 25 846 218 73 73 chr1 38747725 38748083 -203916270 - MER96B DNA MER1_type? -57 360 3 233 96 0 0 chr1 38749260 38749312 -203915041 - LTR66 LTR ERVL -165 445 394 234 231 0 0 chr1 38749320 38749372 -203914981 - L1MC4 LINE L1 -1339 6703 6652 2247 72 7 46 chr1 38749382 38749689 -203914664 - AluSx SINE Alu -17 295 1 881 204 0 0 chr1 38749710 38749867 -203914486 + FRAM SINE Alu 1 157 -9 2292 107 3 3 chr1 38750038 38750346 -203914007 - AluSg SINE Alu -2 308 1 587 234 40 88 chr1 38750379 38750605 -203913748 + LTR33 LTR ERVL 1 215 -306 522 219 9 35 chr1 38750620 38750734 -203913619 - MER81 DNA DNA -1 113 3 347 266 73 8 chr1 38750985 38751109 -203913244 - MIR SINE MIR -8 254 123 667 156 0 209 chr1 38751356 38751506 -203912847 - MER5A DNA MER1_type -6 183 94 1684 139 12 0 chr1 38751506 38751750 -203912603 - AluJb SINE Alu -61 251 5 667 156 0 209 chr1 38751750 38751824 -203912529 - MER5A DNA MER1_type -95 94 6 899 134 67 86 chr1 38752075 38752192 -203912161 - L1MB2 LINE L1 -3 6168 6055 2264 114 0 16 chr1 38752192 38752508 -203911845 - AluSq SINE Alu -2 311 1 899 134 67 86 chr1 38752508 38752599 -203911754 - L1MB2 LINE L1 -116 6055 5964 2217 117 0 7 chr1 38752897 38753197 -203911156 + AluSx SINE Alu 1 298 -14 2101 111 3 29 chr1 38753842 38754148 -203910205 + AluSx SINE Alu 1 298 -14 526 86 37 12 chr1 38754267 38754348 -203910005 + AluS SINE Alu 6 88 -225 1366 137 0 0 chr1 38754433 38754623 -203909730 + AluSg/x SINE Alu 99 288 -24 2298 114 0 3 chr1 38754633 38754940 -203909413 + AluSx SINE Alu 3 308 -4 1667 169 32 14 chr1 38754974 38755253 -203909100 + AluJo SINE Alu 1 284 -28 186 219 0 0 chr1 38755270 38755311 -203909042 + L2 LINE L2 3263 3303 -10 2305 108 0 3 chr1 38755311 38755616 -203908737 + AluSg1 SINE Alu 1 304 -5 436 322 98 51 chr1 38755780 38756550 -203907803 - L2 LINE L2 -18 3254 2453 2618 55 7 0 chr1 38756843 38757151 -203907202 - AluY SINE Alu -1 310 1 1153 81 0 0 chr1 38757151 38757287 -203907066 - AluSq/x SINE Alu -177 136 1 684 238 114 141 chr1 38758080 38758211 -203906142 + MLT1H LTR MaLR 1 134 -415 1737 170 3 3 chr1 38758211 38758493 -203905860 + AluJb SINE Alu 1 282 -30 684 238 114 141 chr1 38758493 38758544 -203905809 + MLT1H LTR MaLR 134 185 -364 1077 152 0 0 chr1 38758544 38758709 -203905644 + FRAM SINE Alu 2 166 0 684 238 114 141 chr1 38758709 38758796 -203905557 + MLT1H LTR MaLR 185 273 -276 2434 87 3 0 chr1 38758796 38759094 -203905259 - AluSp SINE Alu -14 299 1 684 238 114 141 chr1 38759094 38759306 -203905047 + MLT1H LTR MaLR 273 470 -79 2385 94 0 0 chr1 38759306 38759603 -203904750 + AluSx SINE Alu 1 297 -15 684 238 114 141 chr1 38759603 38759678 -203904675 + MLT1H LTR MaLR 470 545 -4 594 272 36 49 chr1 38759683 38759907 -203904446 - MIR SINE MIR -22 240 20 1806 148 34 0 chr1 38760263 38760560 -203903793 - AluJb SINE Alu -5 307 1 559 215 30 0 chr1 38760566 38760701 -203903652 - L1MA3 LINE L1 0 6305 6167 778 241 0 0 chr1 38760779 38760953 -203903400 - AluJb SINE Alu 0 310 137 924 118 0 0 chr1 38760993 38761120 -203903233 + FLAM_C SINE Alu 1 127 -6 1592 254 64 39 chr1 38761120 38761535 -203902818 - L1MCc LINE L1 -4360 2762 2359 2198 105 0 0 chr1 38761535 38761841 -203902512 + AluSx SINE Alu 1 306 -6 1592 254 64 39 chr1 38761841 38762821 -203901532 - L1MCc LINE L1 -4763 2359 1129 1317 158 11 34 chr1 38762919 38763163 -203901190 + AluJo SINE Alu 52 291 -21 1998 134 7 0 chr1 38763163 38763468 -203900885 + AluSx SINE Alu 1 307 -5 1317 158 11 34 chr1 38763468 38763489 -203900864 + AluJo SINE Alu 291 311 -1 2064 138 0 0 chr1 38763696 38764007 -203900346 - AluSx SINE Alu -1 311 1 2181 110 3 0 chr1 38764017 38764327 -203900026 - AluSx SINE Alu -1 311 1 446 208 180 118 chr1 38764798 38765043 -203899310 + MIR SINE MIR 2 261 -1 1835 143 3 3 chr1 38765116 38765409 -203898944 + AluJb SINE Alu 1 293 -19 647 274 169 54 chr1 38765878 38766192 -203898161 + HAL1 LINE L1 16 292 -2215 2327 38 0 51 chr1 38766192 38766505 -203897848 + AluY SINE Alu 1 297 -14 647 274 169 54 chr1 38766505 38766804 -203897549 + HAL1 LINE L1 292 700 -1807 439 295 13 0 chr1 38766835 38766991 -203897362 + HAL1 LINE L1 769 926 -1581 1254 231 22 123 chr1 38766999 38767340 -203897013 + L2 LINE L2 2010 2384 -930 1840 103 4 18 chr1 38767340 38767612 -203896741 + AluSx SINE Alu 1 268 -44 1254 231 22 123 chr1 38767612 38767625 -203896728 + L2 LINE L2 2384 2397 -917 180 0 0 0 chr1 38767625 38767645 -203896708 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1254 231 22 123 chr1 38767645 38767731 -203896622 + L2 LINE L2 2397 2398 -916 2172 93 0 7 chr1 38767731 38768021 -203896332 - AluSg SINE Alu -22 288 1 1254 231 22 123 chr1 38768021 38768072 -203896281 + L2 LINE L2 2398 2453 -861 1329 254 31 25 chr1 38768098 38768456 -203895897 - LTR16C LTR ERVL -49 442 83 442 299 169 5 chr1 38768472 38768656 -203895697 + L2 LINE L2 2447 2660 -654 447 88 15 15 chr1 38768660 38768728 -203895625 - MLT1C LTR MaLR -5 462 395 1044 83 0 0 chr1 38768729 38768861 -203895492 + AluSp SINE Alu 1 132 -181 1694 165 3 7 chr1 38768864 38769155 -203895198 + AluSc SINE Alu 1 290 -19 1673 119 0 0 chr1 38769160 38769396 -203894957 + AluSq SINE Alu 1 236 -77 578 285 127 100 chr1 38769540 38770165 -203894188 - L1M4 LINE L1 -949 5197 4590 2099 114 3 0 chr1 38770165 38770472 -203893881 - AluSp SINE Alu -4 309 2 578 285 127 100 chr1 38770472 38770677 -203893676 - L1M4 LINE L1 -1556 4590 4337 2261 96 0 0 chr1 38770677 38770980 -203893373 - AluSx SINE Alu -9 303 1 578 285 127 100 chr1 38770980 38771088 -203893265 - L1M4 LINE L1 -1809 4337 4233 213 39 0 0 chr1 38771089 38771115 -203893238 + (T)n Simple_repeat Simple_repeat 1 26 0 1305 170 9 4 chr1 38771120 38771350 -203893003 - AluJb SINE Alu -81 231 1 195 42 0 0 chr1 38771353 38771377 -203892976 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1091 171 19 24 chr1 38771405 38771610 -203892743 - AluJo SINE Alu -25 287 84 2296 53 0 0 chr1 38771816 38772098 -203892255 - AluY SINE Alu -29 282 1 2129 117 0 16 chr1 38772608 38772925 -203891428 - AluSx SINE Alu 0 312 1 875 188 24 0 chr1 38772927 38773092 -203891261 - AluJo/FRAM SINE Alu -10 302 134 2175 112 0 0 chr1 38773092 38773397 -203890956 - AluSx SINE Alu -7 305 1 2342 87 0 0 chr1 38773399 38773711 -203890642 - AluSx SINE Alu 0 312 1 1857 157 3 3 chr1 38773723 38774017 -203890336 - AluSx SINE Alu -18 294 1 243 358 0 0 chr1 38774127 38774222 -203890131 + CT-rich Low_complexity Low_complexity 3 97 0 2519 221 20 42 chr1 38774313 38774433 -203889920 - MLT1G LTR MaLR 0 590 469 2173 115 0 10 chr1 38774433 38774746 -203889607 + AluSg SINE Alu 1 310 0 2519 221 20 42 chr1 38774746 38774987 -203889366 - MLT1G LTR MaLR -121 469 245 2186 88 3 0 chr1 38774987 38775283 -203889070 - AluSp SINE Alu -15 298 2 2519 221 20 42 chr1 38775283 38775514 -203888839 - MLT1G LTR MaLR -345 245 10 597 271 25 93 chr1 38775526 38775847 -203888506 + L2 LINE L2 3015 3313 0 293 311 71 20 chr1 38775870 38776066 -203888287 - L3 LINE CR1 -7 1570 1365 1169 132 4 6 chr1 38776068 38776327 -203888026 + AluJb SINE Alu 1 311 -1 540 271 40 93 chr1 38776398 38776645 -203887708 - MIR SINE MIR -12 250 17 513 116 95 175 chr1 38776883 38776997 -203887356 + L1MB5 LINE L1 4103 4224 -1922 3548 68 0 2 chr1 38776997 38777453 -203886900 - L1PA8 LINE L1 -4 6168 5714 1850 152 0 7 chr1 38777453 38777750 -203886603 - AluJb SINE Alu -17 295 1 513 116 95 175 chr1 38777750 38777792 -203886561 + L1MB5 LINE L1 4223 4245 -1901 1952 115 0 42 chr1 38777792 38778105 -203886248 + AluSg SINE Alu 1 300 -10 513 116 95 175 chr1 38778105 38778135 -203886218 + L1MB5 LINE L1 4245 4276 -1870 274 105 0 0 chr1 38778135 38778173 -203886180 - tRNA-Glu-GAG tRNA tRNA -37 38 1 4809 159 29 75 chr1 38778182 38778358 -203885995 + L1MB5 LINE L1 4265 4448 -1726 2240 88 0 0 chr1 38778358 38778655 -203885698 - AluY SINE Alu -13 298 2 4809 159 29 75 chr1 38778655 38778833 -203885520 + L1MB5 LINE L1 4448 4633 -1541 2169 94 6 28 chr1 38778833 38779152 -203885201 + AluSx SINE Alu 1 312 0 480 35 0 0 chr1 38779153 38779211 -203885142 + (CA)n Simple_repeat Simple_repeat 1 58 0 4809 159 29 75 chr1 38779211 38779465 -203884888 + L1MB5 LINE L1 4633 4897 -1277 2149 103 7 0 chr1 38779465 38779765 -203884588 - AluSx SINE Alu -9 303 2 4809 159 29 75 chr1 38779765 38779788 -203884565 + L1MB5 LINE L1 4897 4920 -1254 2096 113 33 0 chr1 38779788 38780090 -203884263 - AluSq SINE Alu 0 313 2 4809 159 29 75 chr1 38780090 38780764 -203883589 + L1MB5 LINE L1 4920 5485 -689 1684 155 0 62 chr1 38780764 38781087 -203883266 + AluJb SINE Alu 1 303 -9 4809 159 29 75 chr1 38781087 38781415 -203882938 + L1MB5 LINE L1 5485 5827 -347 857 112 0 8 chr1 38781416 38781541 -203882812 + FLAM_C SINE Alu 3 126 -17 2041 96 4 4 chr1 38782138 38782419 -203881934 - AluSx SINE Alu -11 301 21 222 359 0 22 chr1 38782631 38782723 -203881630 - MIR SINE MIR -152 110 21 203 156 0 0 chr1 38782792 38782824 -203881529 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2066 74 7 11 chr1 38783025 38783346 -203881007 - AluY SINE Alu 0 320 1 311 379 55 17 chr1 38783423 38783658 -203880695 - L2 LINE L2 -2853 461 218 2547 48 0 0 chr1 38783971 38784280 -203880073 - AluY SINE Alu -2 309 1 2324 67 0 0 chr1 38784439 38784736 -203879617 + AluY SINE Alu 1 297 -14 2501 42 0 13 chr1 38784794 38785105 -203879248 + AluY SINE Alu 1 307 -4 368 271 57 8 chr1 38785216 38785338 -203879015 + MIR SINE MIR 100 227 -35 2347 142 5 15 chr1 38785435 38785829 -203878524 + MLT1B LTR MaLR 1 390 0 2186 79 7 3 chr1 38786076 38786380 -203877973 - AluSx SINE Alu -7 305 1 30 97 0 0 chr1 38786896 38786989 -203877364 + GC_rich Low_complexity Low_complexity 1 93 0 234 0 0 0 chr1 38787012 38787038 -203877315 + (CGG)n Simple_repeat Simple_repeat 2 27 0 29 47 0 0 chr1 38787089 38787132 -203877221 + GC_rich Low_complexity Low_complexity 1 43 0 225 0 0 0 chr1 38787180 38787205 -203877148 + (CGG)n Simple_repeat Simple_repeat 3 27 0 25 51 0 0 chr1 38787219 38787258 -203877095 + GC_rich Low_complexity Low_complexity 1 39 0 22 70 0 0 chr1 38787296 38787339 -203877014 + GC_rich Low_complexity Low_complexity 1 43 0 519 312 35 6 chr1 38788554 38788727 -203875626 + MIR SINE MIR 75 252 -10 400 279 81 47 chr1 38789398 38789570 -203874783 - MIR SINE MIR -50 212 35 1315 152 76 76 chr1 38789699 38790001 -203874352 + AluSq SINE Alu 9 310 -3 2012 101 44 0 chr1 38790033 38790329 -203874024 + AluSx SINE Alu 1 309 -3 879 233 63 36 chr1 38790388 38790441 -203873912 - MIR SINE MIR -1 261 211 2246 81 10 0 chr1 38790441 38790739 -203873614 - AluSg1 SINE Alu -8 301 1 879 233 63 36 chr1 38790739 38790938 -203873415 - MIR SINE MIR -51 211 2 295 80 26 0 chr1 38790982 38791029 -203873324 + MLT1A2 LTR MaLR 281 344 -46 210 71 0 0 chr1 38791033 38791061 -203873292 + (A)n Simple_repeat Simple_repeat 1 28 0 256 346 63 16 chr1 38791290 38791417 -203872936 + MIR3 SINE MIR 14 146 -62 2047 124 3 0 chr1 38791434 38791733 -203872620 - AluSx SINE Alu -12 300 1 2322 81 0 0 chr1 38791969 38792267 -203872086 + AluY SINE Alu 1 298 -13 1759 132 49 23 chr1 38792316 38792620 -203871733 + AluJb SINE Alu 1 312 0 364 171 27 18 chr1 38792621 38792669 -203871684 + GA-rich Low_complexity Low_complexity 4 50 -65 1968 102 0 4 chr1 38792669 38792944 -203871409 + AluSg SINE Alu 35 308 -2 364 171 27 18 chr1 38792944 38793006 -203871347 + GA-rich Low_complexity Low_complexity 50 115 0 184 0 97 0 chr1 38793195 38793226 -203871127 + T-rich Low_complexity Low_complexity 2 35 0 1997 106 0 3 chr1 38793228 38793510 -203870843 - AluSg SINE Alu -29 281 1 2396 74 0 0 chr1 38793657 38793956 -203870397 - AluY SINE Alu -11 300 2 656 302 116 40 chr1 38794012 38794459 -203869894 + L2 LINE L2 2833 3313 0 257 303 247 0 chr1 38795698 38795860 -203868493 - MIR SINE MIR -14 248 47 834 228 50 0 chr1 38796434 38796614 -203867739 - MER5A DNA MER1_type 0 189 1 208 237 34 17 chr1 38796723 38796782 -203867571 - MIR SINE MIR -1 261 202 508 299 71 11 chr1 38796814 38796998 -203867355 - MIR SINE MIR -59 203 9 1964 132 7 13 chr1 38797002 38797306 -203867047 - AluSx SINE Alu -10 302 1 366 322 164 14 chr1 38797452 38797660 -203866693 - MIR SINE MIR -15 247 9 619 200 291 6 chr1 38798642 38798817 -203865536 - MIR SINE MIR -6 256 32 1935 118 0 30 chr1 38799180 38799500 -203864853 - AluSx SINE Alu 0 312 1 189 0 0 0 chr1 38801791 38801812 -203862541 + (T)n Simple_repeat Simple_repeat 1 21 0 372 103 0 0 chr1 38803089 38803147 -203861206 + (CCTG)n Simple_repeat Simple_repeat 2 59 0 225 65 0 0 chr1 38804733 38804764 -203859589 + (CAG)n Simple_repeat Simple_repeat 2 32 0 182 336 109 17 chr1 38804937 38805056 -203859297 - L2 LINE L2 0 3272 3143 373 307 146 49 chr1 38805084 38805556 -203858797 - L2 LINE L2 -706 2608 2091 957 271 115 20 chr1 38807935 38808326 -203856027 - MLT1L LTR MaLR -62 553 126 225 224 158 43 chr1 38808394 38808522 -203855831 - MIR SINE MIR -47 161 21 308 216 145 2 chr1 38808846 38808941 -203855412 - L1M LINE L1 -756 5410 5318 1442 157 28 39 chr1 38808944 38809230 -203855123 - AluJb SINE Alu -18 294 12 664 209 135 35 chr1 38809248 38809478 -203854875 - L1M4 LINE L1 -813 5333 5081 365 236 28 57 chr1 38809667 38809773 -203854580 - L2 LINE L2 -1 3312 3210 469 279 85 0 chr1 38810480 38810609 -203853744 - MIR SINE MIR -46 216 77 21 36 0 0 chr1 38810646 38810674 -203853679 + AT_rich Low_complexity Low_complexity 1 28 0 299 215 21 65 chr1 38810745 38810838 -203853515 - L2 LINE L2 -1 3312 3224 184 342 25 42 chr1 38810982 38811102 -203853251 - L2 LINE L2 -338 2976 2859 216 333 51 0 chr1 38811132 38811210 -203853143 - L2 LINE L2 -528 2786 2705 224 272 212 52 chr1 38813232 38813713 -203850640 - L2 LINE L2 -1242 2072 1515 180 0 0 0 chr1 38813714 38813734 -203850619 + (T)n Simple_repeat Simple_repeat 1 20 0 2003 107 23 7 chr1 38813743 38814042 -203850311 - AluSq SINE Alu -9 304 1 30 69 0 0 chr1 38814055 38814113 -203850240 + AT_rich Low_complexity Low_complexity 1 58 0 815 116 0 103 chr1 38814186 38814341 -203850012 - AluSg/x SINE Alu -17 293 155 1436 118 0 10 chr1 38814341 38814545 -203849808 - AluSq SINE Alu -111 202 1 2171 111 0 0 chr1 38814556 38814853 -203849500 - AluSx SINE Alu -15 297 1 246 191 44 0 chr1 38815076 38815144 -203849209 - L1MC/D LINE L1 -2368 5440 5370 1847 171 0 0 chr1 38815796 38816106 -203848247 - AluJb SINE Alu -2 310 1 1648 163 7 29 chr1 38816110 38816416 -203847937 - AluJo SINE Alu -3 309 11 553 243 201 0 chr1 38816532 38816676 -203847677 + MER5A DNA MER1_type 17 189 0 302 250 0 71 chr1 38817743 38817855 -203846498 - MIR3 SINE MIR -92 116 13 211 294 78 88 chr1 38819036 38819138 -203845215 - L2 LINE L2 -21 3292 3192 505 238 143 18 chr1 38820137 38820246 -203844107 + MER5A DNA MER1_type 1 140 -49 2321 78 3 0 chr1 38820246 38820540 -203843813 - AluSp SINE Alu -18 295 1 505 238 143 18 chr1 38820540 38820598 -203843755 + MER5A DNA MER1_type 140 189 0 1664 112 80 25 chr1 38820613 38820899 -203843454 - AluSx SINE Alu -10 302 1 1473 269 57 22 chr1 38821250 38821704 -203842649 - L2 LINE L2 -6 3307 2838 703 152 87 4 chr1 38821792 38821978 -203842375 + AluJb SINE Alu 12 291 -21 1744 178 27 23 chr1 38821978 38822501 -203841852 - L1MB7 LINE L1 -4 6180 5606 2315 68 3 0 chr1 38822501 38822795 -203841558 - AluY SINE Alu -16 295 1 1744 178 27 23 chr1 38822795 38822889 -203841464 - L1MB7 LINE L1 -578 5606 5514 3719 141 23 0 chr1 38823116 38823714 -203840639 - L1MB3 LINE L1 0 6183 5572 225 222 0 0 chr1 38823714 38823759 -203840594 - L1P5 LINE L1 -604 5550 5506 368 282 16 51 chr1 38824041 38824237 -203840116 - MIR SINE MIR -63 145 5 192 257 115 53 chr1 38824562 38824675 -203839678 - MIR SINE MIR 0 262 143 1842 136 3 3 chr1 38824687 38824974 -203839379 + AluSq SINE Alu 1 287 -26 413 129 0 0 chr1 38825119 38825181 -203839172 + Alu SINE Alu 238 299 -11 30 45 0 0 chr1 38825559 38825603 -203838750 + AT_rich Low_complexity Low_complexity 1 44 0 1993 121 17 0 chr1 38825713 38826011 -203838342 + AluSx SINE Alu 1 303 -9 2240 88 0 23 chr1 38826098 38826405 -203837948 + AluSq SINE Alu 1 300 -13 2078 119 0 0 chr1 38826479 38826772 -203837581 + AluSg SINE Alu 1 293 -17 1586 176 36 0 chr1 38826959 38827260 -203837093 + AluJb SINE Alu 1 312 0 1268 213 20 38 chr1 38827276 38827574 -203836779 + L1ME1 LINE L1 4389 4682 -1464 378 0 0 0 chr1 38827574 38827616 -203836737 + (CA)n Simple_repeat Simple_repeat 2 43 0 1268 213 20 38 chr1 38827616 38827664 -203836689 + L1ME1 LINE L1 4682 4729 -1417 1539 217 104 75 chr1 38827673 38828125 -203836228 + MLT1E LTR MaLR 101 538 -55 2259 90 0 37 chr1 38828125 38828310 -203836043 - AluSx SINE Alu -2 310 120 198 0 0 0 chr1 38828310 38828332 -203836021 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1860 118 0 50 chr1 38828332 38828629 -203835724 - AluSg SINE Alu -28 282 1 2259 90 0 37 chr1 38828629 38828764 -203835589 - AluSx SINE Alu -190 122 1 1539 217 104 75 chr1 38828764 38828812 -203835541 + MLT1E LTR MaLR 538 590 -3 1258 221 54 4 chr1 38828813 38829089 -203835264 + L1ME1 LINE L1 4720 5009 -1137 1323 141 74 50 chr1 38829089 38829387 -203834966 + AluJo SINE Alu 2 306 -6 701 188 7 32 chr1 38829393 38829547 -203834806 + L1ME1 LINE L1 5676 5825 -341 810 266 25 54 chr1 38829596 38829910 -203834443 + L1ME1 LINE L1 5819 6123 -43 2174 77 27 0 chr1 38829910 38830207 -203834146 - AluSq SINE Alu -8 305 1 810 266 25 54 chr1 38830207 38830246 -203834107 + L1ME1 LINE L1 6123 6162 -4 245 348 26 9 chr1 38830488 38830603 -203833750 - L2 LINE L2 -539 2775 2659 45 19 0 0 chr1 38830638 38830690 -203833663 + AT_rich Low_complexity Low_complexity 1 52 0 195 253 172 0 chr1 38830812 38830874 -203833479 - MIR SINE MIR -105 103 42 2442 55 3 0 chr1 38830902 38831212 -203833141 - AluY SINE Alu 0 311 1 698 243 100 36 chr1 38831473 38831889 -203832464 - L1ME2 LINE L1 -207 5957 5401 2151 101 13 0 chr1 38831894 38832192 -203832161 + AluSx SINE Alu 1 302 -10 847 143 0 8 chr1 38832221 38832347 -203832006 + FLAM_C SINE Alu 3 127 -16 239 151 0 57 chr1 38832397 38832450 -203831903 + AluJo/FLAM SINE Alu 120 169 -133 2212 112 0 0 chr1 38832719 38833022 -203831331 - AluSx SINE Alu -9 303 1 1549 183 6 31 chr1 38833098 38833415 -203830938 - AluJo SINE Alu -1 311 3 270 56 0 0 chr1 38833435 38833471 -203830882 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 562 213 9 0 chr1 38833479 38833587 -203830766 - FLAM_A SINE Alu -32 110 2 13119 115 22 26 chr1 38834385 38834705 -203829648 + Tigger1 DNA MER2_type 4 324 -2094 1714 155 0 39 chr1 38834705 38835014 -203829339 - AluJb SINE Alu -15 297 1 13119 115 22 26 chr1 38835014 38835951 -203828402 + Tigger1 DNA MER2_type 324 1263 -1155 2131 114 0 0 chr1 38835951 38836249 -203828104 - AluSg SINE Alu -12 298 1 13119 115 22 26 chr1 38836249 38836792 -203827561 + Tigger1 DNA MER2_type 1263 1799 -619 2397 77 0 0 chr1 38836792 38837103 -203827250 - AluY SINE Alu 0 311 1 13119 115 22 26 chr1 38837103 38837325 -203827028 + Tigger1 DNA MER2_type 1799 2020 -398 1085 168 0 24 chr1 38837325 38837533 -203826820 - AluJo SINE Alu -17 295 93 320 354 78 39 chr1 38837794 38838051 -203826302 + L2 LINE L2 2825 3091 -181 1175 148 141 28 chr1 38838104 38838238 -203826115 + MER33 DNA MER1_type 1 118 -2467 2059 110 3 0 chr1 38838238 38838528 -203825825 - AluSg SINE Alu -19 291 1 1175 148 141 28 chr1 38838528 38838600 -203825753 + MER33 DNA MER1_type 118 180 -2405 2018 117 0 7 chr1 38838600 38838922 -203825431 - AluY SINE Alu 0 311 1 1175 148 141 28 chr1 38838922 38839005 -203825348 + MER33 DNA MER1_type 180 324 0 2218 102 7 0 chr1 38839705 38840010 -203824343 + AluSp SINE Alu 1 307 -6 1939 107 80 0 chr1 38840013 38840302 -203824051 + AluSx SINE Alu 1 312 0 237 258 68 68 chr1 38841338 38841470 -203822883 - L2 LINE L2 -8 3305 3174 677 249 74 19 chr1 38841577 38841875 -203822478 + L1ME1 LINE L1 5725 6052 -114 332 232 0 0 chr1 38841875 38841931 -203822422 - MER2 DNA MER2_type 0 345 290 467 144 39 19 chr1 38841947 38842051 -203822302 + L1MA5A LINE L1 6191 6296 -1 31 44 0 0 chr1 38842103 38842148 -203822205 + AT_rich Low_complexity Low_complexity 1 45 0 1193 105 13 110 chr1 38842234 38842306 -203822047 - MER2 DNA MER2_type -139 206 129 1236 62 152 62 chr1 38842306 38842371 -203821982 - MER30 DNA MER1_type 0 230 172 2203 106 0 6 chr1 38842371 38842682 -203821671 + AluSx SINE Alu 1 309 -3 1236 62 152 62 chr1 38842682 38842827 -203821526 - MER30 DNA MER1_type -58 172 1 1193 105 13 110 chr1 38842827 38842878 -203821475 - MER2 DNA MER2_type -216 129 75 806 171 0 0 chr1 38842878 38843001 -203821352 - FLAM_A SINE Alu -6 127 5 1193 105 13 110 chr1 38843001 38843104 -203821249 - MER2 DNA MER2_type -270 75 1 374 298 81 40 chr1 38843211 38843335 -203821018 + L2 LINE L2 3143 3271 -1 232 200 15 15 chr1 38843335 38843400 -203820953 + (CA)n Simple_repeat Simple_repeat 1 65 0 198 0 0 0 chr1 38844150 38844172 -203820181 + (TTAGG)n Simple_repeat Simple_repeat 2 23 0 301 268 99 63 chr1 38844294 38844436 -203819917 - L2 LINE L2 -1 3271 3125 219 204 0 0 chr1 38846969 38847013 -203817340 + (CCG)n Simple_repeat Simple_repeat 3 46 0 457 327 206 27 chr1 38847667 38848403 -203815950 + L2 LINE L2 1802 2669 -645 334 153 51 0 chr1 38848585 38848644 -203815709 - MER5A DNA MER1_type -1 188 127 2237 90 0 3 chr1 38848646 38848946 -203815407 + AluSx SINE Alu 1 299 -13 1759 132 49 23 chr1 38848995 38849299 -203815054 + AluJb SINE Alu 1 312 0 364 171 27 18 chr1 38849300 38849348 -203815005 + GA-rich Low_complexity Low_complexity 4 50 -65 1968 102 0 4 chr1 38849348 38849623 -203814730 + AluSg SINE Alu 35 308 -2 364 171 27 18 chr1 38849623 38849685 -203814668 + GA-rich Low_complexity Low_complexity 50 115 0 857 56 56 24 chr1 38849830 38849955 -203814398 - L1PA5 LINE L1 0 6154 6026 1280 92 0 0 chr1 38850059 38850223 -203814130 - AluSq SINE Alu -149 164 1 2868 166 39 48 chr1 38850224 38850895 -203813458 + L1MB5 LINE L1 4848 5497 -677 1684 155 0 62 chr1 38850895 38851218 -203813135 + AluJb SINE Alu 1 303 -9 2868 166 39 48 chr1 38851218 38851546 -203812807 + L1MB5 LINE L1 5497 5827 -347 857 112 0 8 chr1 38851547 38851672 -203812681 + FLAM_C SINE Alu 3 126 -17 2041 96 4 4 chr1 38852269 38852550 -203811803 - AluSx SINE Alu -11 301 21 222 359 0 22 chr1 38852762 38852854 -203811499 - MIR SINE MIR -152 110 21 203 156 0 0 chr1 38852923 38852955 -203811398 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2066 74 7 11 chr1 38853156 38853477 -203810876 - AluY SINE Alu 0 320 1 311 379 55 17 chr1 38853554 38853789 -203810564 - L2 LINE L2 -2853 461 218 2461 62 0 0 chr1 38854102 38854411 -203809942 - AluY SINE Alu -2 309 1 723 290 57 18 chr1 38854424 38854703 -203809650 - L2 LINE L2 -1124 2190 1901 228 200 25 38 chr1 38854870 38854950 -203809403 + L1MEd LINE L1 54 132 -5987 335 222 14 0 chr1 38855242 38855314 -203809039 + L1ME3A LINE L1 5486 5558 -563 1305 187 211 54 chr1 38855318 38855406 -203808947 + L1ME3A LINE L1 5628 5701 -469 2123 107 0 3 chr1 38855406 38855704 -203808649 - AluSx SINE Alu -15 297 1 1305 187 211 54 chr1 38855704 38856080 -203808273 + L1ME3A LINE L1 5701 6165 -5 1653 171 20 3 chr1 38857091 38857389 -203806964 + AluJo SINE Alu 1 303 -9 1318 183 95 0 chr1 38858406 38858680 -203805673 + AluJo SINE Alu 1 300 -12 305 322 35 0 chr1 38859068 38859155 -203805198 - L2 LINE L2 -14 3258 3169 432 130 13 13 chr1 38859332 38859409 -203804944 - L1PA5 LINE L1 -176 5978 5902 193 333 17 0 chr1 38859534 38859594 -203804759 - L2 LINE L2 -217 3055 2995 2150 107 0 0 chr1 38859728 38860028 -203804325 - AluSx SINE Alu -12 300 1 363 236 54 27 chr1 38860318 38860466 -203803887 + MER103 DNA DNA 1 152 -14 1312 154 27 32 chr1 38860515 38860735 -203803618 - MER20 DNA MER1_type 0 219 1 2347 103 0 0 chr1 38861369 38861679 -203802674 + AluSg SINE Alu 1 310 0 186 305 51 42 chr1 38861998 38862116 -203802237 + L2 LINE L2 3187 3305 -8 830 255 21 25 chr1 38862737 38862980 -203801373 - L2 LINE L2 0 3313 3072 231 309 0 0 chr1 38863001 38863085 -203801268 + L1MC4 LINE L1 6613 6696 -1346 2418 106 0 0 chr1 38863192 38863503 -203800850 + AluSx SINE Alu 1 311 -1 390 42 0 0 chr1 38863503 38863551 -203800802 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 2394 221 65 169 chr1 38863554 38864159 -203800194 - L2 LINE L2 -414 2900 2234 756 208 0 8 chr1 38864159 38864289 -203800064 + AluJo/FLAM SINE Alu 4 132 -180 2071 128 0 20 chr1 38864289 38864594 -203799759 + AluSg SINE Alu 1 299 -11 422 111 0 32 chr1 38864596 38864659 -203799694 + Alu SINE Alu 238 298 -14 2394 221 65 169 chr1 38864659 38865195 -203799158 - L2 LINE L2 -1080 2234 1730 2162 131 3 0 chr1 38865195 38865500 -203798853 - AluSx SINE Alu -6 306 1 2394 221 65 169 chr1 38865500 38865643 -203798710 - L2 LINE L2 -1584 1730 1574 382 236 49 57 chr1 38865726 38865849 -203798504 - MIR SINE MIR -62 200 79 * 397 298 13 53 chr1 38865844 38865995 -203798358 + MIR SINE MIR 62 206 -56 1868 122 45 14 chr1 38866737 38867024 -203797329 - AluSx SINE Alu -16 296 1 2262 102 7 0 chr1 38867103 38867398 -203796955 - AluSp SINE Alu -16 297 1 837 97 14 41 chr1 38867898 38868043 -203796310 + L1MA4 LINE L1 6155 6295 -5 1963 119 3 66 chr1 38868097 38868264 -203796089 - AluSx SINE Alu -12 300 161 2128 113 0 16 chr1 38868264 38868575 -203795778 - AluSx SINE Alu -6 306 1 1963 119 3 66 chr1 38868575 38868726 -203795627 - AluSx SINE Alu -151 161 2 22 35 0 0 chr1 38868970 38868999 -203795354 + AT_rich Low_complexity Low_complexity 1 29 0 1873 204 74 11 chr1 38869312 38869358 -203794995 - L1MB4 LINE L1 -1 6179 6137 1633 176 14 30 chr1 38869358 38869653 -203794700 + AluJo SINE Alu 1 290 -22 1873 204 74 11 chr1 38869653 38870092 -203794261 - L1MB4 LINE L1 -43 6137 5667 816 232 27 18 chr1 38870966 38871186 -203793167 + MIR SINE MIR 31 252 -10 240 232 313 20 chr1 38871278 38871377 -203792976 + L2 LINE L2 3181 3308 -5 2214 108 0 13 chr1 38871764 38872071 -203792282 + AluSg1 SINE Alu 1 303 -6 2177 123 3 3 chr1 38872082 38872384 -203791969 + AluSx SINE Alu 1 302 -10 279 93 0 0 chr1 38872639 38872682 -203791671 - AluJo SINE Alu 0 302 260 1250 171 34 0 chr1 38872682 38872887 -203791466 - AluJo SINE Alu -100 212 1 2292 103 7 0 chr1 38873154 38873455 -203790898 + AluSq SINE Alu 1 303 -10 279 93 0 0 chr1 38873712 38873755 -203790598 - AluJo SINE Alu 0 302 260 1236 176 34 0 chr1 38873755 38873960 -203790393 - AluJo SINE Alu -100 212 1 1041 157 0 0 chr1 38874127 38874286 -203790067 - AluJo SINE Alu -69 243 85 2276 101 0 3 chr1 38874438 38874736 -203789617 - AluSq SINE Alu -16 297 1 255 250 0 0 chr1 38875007 38875051 -203789302 - MER5A DNA MER1_type -3 186 143 2251 70 26 42 chr1 38875469 38875782 -203788571 + AluSx SINE Alu 1 308 -4 1389 188 67 7 chr1 38875795 38876077 -203788276 + AluJo SINE Alu 3 301 -11 255 250 0 0 chr1 38876489 38876533 -203787820 - MER5A DNA MER1_type -3 186 143 2286 67 25 41 chr1 38876951 38877265 -203787088 + AluSx SINE Alu 1 309 -3 1667 153 64 7 chr1 38877278 38877559 -203786794 + AluJo SINE Alu 3 299 -13 30 45 0 0 chr1 38877937 38877981 -203786372 + AT_rich Low_complexity Low_complexity 1 44 0 2096 121 17 0 chr1 38878091 38878389 -203785964 + AluSx SINE Alu 1 303 -9 2205 100 36 0 chr1 38878476 38878777 -203785576 + AluSx SINE Alu 1 312 0 231 146 0 0 chr1 38879785 38879826 -203784527 + (TTC)n Simple_repeat Simple_repeat 2 42 0 2308 92 3 3 chr1 38880395 38880700 -203783653 + AluSc SINE Alu 1 305 -4 951 198 12 95 chr1 38881618 38881975 -203782378 - MLT1I LTR MaLR 0 409 14 1706 176 0 3 chr1 38882108 38882392 -203781961 - AluJo SINE Alu -29 283 1 1510 116 29 142 chr1 38882402 38882748 -203781605 - AluYb8 SINE Alu -6 312 6 2153 139 10 0 chr1 38882752 38883054 -203781299 - AluSx SINE Alu -7 305 1 320 352 16 16 chr1 38883321 38883449 -203780904 + L2 LINE L2 3182 3309 -4 419 250 128 33 chr1 38885334 38885514 -203778839 - MIR SINE MIR -49 213 17 2502 75 0 3 chr1 38885673 38885980 -203778373 - AluY SINE Alu -5 306 1 610 133 89 0 chr1 38886251 38886341 -203778012 + FLAM_A SINE Alu 4 101 -41 2180 103 7 0 chr1 38886356 38886647 -203777706 + AluSg SINE Alu 1 293 -17 2322 78 20 0 chr1 38886781 38887075 -203777278 - AluY SINE Alu -11 300 1 194 314 38 29 chr1 38887444 38887549 -203776804 - L2 LINE L2 -1654 1660 1555 289 365 55 7 chr1 38887760 38887905 -203776448 - L3 LINE CR1 -481 1096 945 1937 111 24 14 chr1 38888152 38888441 -203775912 - AluSx SINE Alu -20 292 1 234 91 0 0 chr1 38888515 38888548 -203775805 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 22 0 0 0 chr1 38888892 38888914 -203775439 + AT_rich Low_complexity Low_complexity 1 22 0 2723 207 52 90 chr1 38889103 38889522 -203774831 - L1ME3 LINE L1 -2 6160 5727 2214 70 0 4 chr1 38889522 38889793 -203774560 - AluY SINE Alu -41 270 1 2723 207 52 90 chr1 38889793 38890162 -203774191 - L1ME3 LINE L1 -435 5727 5346 2155 134 0 3 chr1 38890162 38890468 -203773885 - AluSx SINE Alu -7 305 1 1867 167 0 3 chr1 38890470 38890764 -203773589 - AluJo SINE Alu -19 293 1 2723 207 52 90 chr1 38890764 38890965 -203773388 - L1ME3 LINE L1 -817 5345 5138 1757 181 20 10 chr1 38890965 38891131 -203773222 - AluJo SINE Alu -10 302 139 183 42 0 0 chr1 38891131 38891155 -203773198 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2107 119 0 11 chr1 38891155 38891440 -203772913 - AluSx SINE Alu -30 282 1 1757 181 20 10 chr1 38891440 38891571 -203772782 - AluJo SINE Alu -172 140 1 2723 207 52 90 chr1 38891571 38891604 -203772749 - L1ME3 LINE L1 -1023 5139 5155 1616 161 4 4 chr1 38892054 38892327 -203772026 - AluJb SINE Alu -1 311 39 874 266 31 4 chr1 38892465 38892694 -203771659 + MIR SINE MIR 1 235 -27 190 237 129 21 chr1 38892745 38892838 -203771515 - L2 LINE L2 -21 3292 3190 924 163 0 0 chr1 38892932 38893067 -203771286 + AluJb SINE Alu 164 298 -14 2089 98 0 18 chr1 38893198 38893369 -203770984 - AluSx SINE Alu 0 304 139 2223 102 7 13 chr1 38893369 38893672 -203770681 - AluSx SINE Alu -11 301 1 2089 98 0 18 chr1 38893672 38893809 -203770544 - AluSx SINE Alu -165 139 1 1572 169 13 73 chr1 38893811 38894125 -203770228 - AluJo SINE Alu -17 295 1 267 103 0 0 chr1 38895008 38895047 -203769306 + (TA)n Simple_repeat Simple_repeat 2 40 0 810 169 15 42 chr1 38895359 38895603 -203768750 + MER1B DNA MER1_type 1 339 0 285 274 0 0 chr1 38895656 38895729 -203768624 + MIR SINE MIR 88 160 -102 2127 115 14 0 chr1 38895729 38896025 -203768328 + AluSx SINE Alu 1 300 -12 248 226 0 19 chr1 38896028 38896081 -203768272 + Tigger4(Zombi) DNA MER2_type 2679 2730 -1 2186 122 0 3 chr1 38896270 38896574 -203767779 - AluSq SINE Alu -10 303 1 260 237 0 26 chr1 38896741 38896817 -203767536 + L1PB4 LINE L1 6083 6156 0 21 0 0 0 chr1 38896836 38896857 -203767496 + AT_rich Low_complexity Low_complexity 1 21 0 1844 152 0 26 chr1 38897250 38897552 -203766801 - AluJb SINE Alu -18 294 1 221 334 98 64 chr1 38897584 38898404 -203765949 + L2 LINE L2 1218 2009 -1305 1817 155 3 39 chr1 38898404 38898713 -203765640 - AluSq SINE Alu -15 298 1 221 334 98 64 chr1 38898713 38898962 -203765391 + L2 LINE L2 2009 2248 -1066 967 255 163 17 chr1 38898962 38899319 -203765034 - MLT1I LTR MaLR 0 409 1 221 334 98 64 chr1 38899319 38899493 -203764860 + L2 LINE L2 2248 2504 -810 2349 73 3 0 chr1 38899522 38899809 -203764544 + AluY SINE Alu 1 288 -23 198 0 0 0 chr1 38899810 38899832 -203764521 + (TA)n Simple_repeat Simple_repeat 2 23 0 707 210 0 0 chr1 38899832 38899951 -203764402 - FLAM_C SINE Alu -14 119 1 264 216 0 0 chr1 38899953 38900004 -203764349 - L1ME1 LINE L1 -65 6101 6051 1292 98 13 94 chr1 38900004 38900103 -203764250 + MER2 DNA MER2_type 1 106 -239 868 173 0 0 chr1 38900103 38900230 -203764123 + FLAM_A SINE Alu 1 127 -6 1292 98 13 94 chr1 38900230 38900281 -203764072 + MER2 DNA MER2_type 106 130 -215 1315 62 152 62 chr1 38900281 38900426 -203763927 + MER30 DNA MER1_type 1 172 -58 2328 103 0 6 chr1 38900426 38900737 -203763616 - AluSx SINE Alu -3 309 1 1315 62 152 62 chr1 38900737 38900802 -203763551 + MER30 DNA MER1_type 172 230 0 1292 98 13 94 chr1 38900802 38900874 -203763479 + MER2 DNA MER2_type 130 206 -139 261 218 67 107 chr1 38900905 38901057 -203763296 + MER2 DNA MER2_type 130 272 -73 507 144 39 19 chr1 38901057 38901161 -203763192 - L1MA5A LINE L1 -1 6296 6191 261 218 67 107 chr1 38901161 38901233 -203763120 + MER2 DNA MER2_type 272 345 0 833 264 125 3 chr1 38901236 38901524 -203762829 - L1MD3 LINE L1 -1941 6054 5732 228 244 76 69 chr1 38901638 38901769 -203762584 + L2 LINE L2 3174 3305 -8 299 285 90 49 chr1 38902421 38902565 -203761788 - MIR3 SINE MIR -58 150 1 21 0 0 0 chr1 38902569 38902590 -203761763 + AT_rich Low_complexity Low_complexity 1 21 0 1765 174 0 13 chr1 38902602 38902906 -203761447 + AluJo SINE Alu 2 301 -11 2113 140 0 9 chr1 38903465 38903780 -203760573 + AluSx SINE Alu 1 312 0 527 341 171 16 chr1 38904757 38905144 -203759209 - L2 LINE L2 -1 3271 2825 181 340 60 10 chr1 38905188 38905288 -203759065 - L2 LINE L2 -786 2528 2424 536 292 112 26 chr1 38905535 38905840 -203758513 - L2 LINE L2 0 3313 2983 2543 46 7 3 chr1 38905936 38906240 -203758113 + AluY SINE Alu 1 305 -6 209 301 27 27 chr1 38906618 38906691 -203757662 - L2 LINE L2 -196 3076 3004 2416 56 7 10 chr1 38906805 38907111 -203757242 + AluY SINE Alu 1 305 -6 272 84 42 28 chr1 38907253 38907324 -203757029 + T-rich Low_complexity Low_complexity 4 75 0 2119 85 46 4 chr1 38910385 38910666 -203753687 + AluSq SINE Alu 1 293 -20 251 296 28 0 chr1 38912107 38912178 -203752175 - L2 LINE L2 0 3272 3200 185 179 0 0 chr1 38912249 38912277 -203752076 - L2 LINE L2 -23 3249 3222 2146 83 22 0 chr1 38912278 38912600 -203751753 - AluY SINE Alu 0 328 1 1991 150 0 13 chr1 38912602 38912915 -203751438 - AluJb SINE Alu -3 309 1 2210 102 0 3 chr1 38913220 38913505 -203750848 - AluSx SINE Alu -28 284 1 1207 113 17 6 chr1 38913810 38913987 -203750366 - FRAM SINE Alu -2 174 1 306 100 0 0 chr1 38914030 38914070 -203750283 - tRNA-Thr-ACT tRNA tRNA -37 40 1 715 169 8 32 chr1 38914082 38914206 -203750147 - FLAM_A SINE Alu -11 122 2 558 328 103 32 chr1 38914534 38914912 -203749441 - L2 LINE L2 -582 2732 2328 1273 85 6 0 chr1 38964995 38965171 -203699182 + AluSg/x SINE Alu 122 298 -14 1163 132 11 0 chr1 38965223 38965405 -203698948 - AluSg/x SINE Alu -6 306 123 2066 120 3 0 chr1 38965410 38965709 -203698644 - AluSq SINE Alu -13 300 1 192 257 115 53 chr1 38965721 38965834 -203698519 + MIR SINE MIR 143 262 0 395 284 16 45 chr1 38966159 38966354 -203697999 + MIR SINE MIR 5 192 -63 225 222 0 0 chr1 38966636 38966681 -203697672 + L1P5 LINE L1 5506 5550 -604 3701 142 23 0 chr1 38966681 38967279 -203697074 + L1MB3 LINE L1 5572 6183 0 1744 176 27 23 chr1 38967506 38967600 -203696753 + L1MB7 LINE L1 5514 5606 -578 2287 71 3 0 chr1 38967600 38967894 -203696459 + AluY SINE Alu 1 295 -16 1744 176 27 23 chr1 38967894 38968417 -203695936 + L1MB7 LINE L1 5606 6180 -4 703 145 137 0 chr1 38968417 38968534 -203695819 - AluJo/FRAM SINE Alu -21 291 159 446 149 0 0 chr1 38968536 38968603 -203695750 - AluJ/FLAM SINE Alu -234 78 12 1487 273 55 22 chr1 38968691 38969146 -203695207 + L2 LINE L2 2838 3307 -6 1669 112 80 25 chr1 38969497 38969783 -203694570 + AluSx SINE Alu 1 302 -10 505 238 143 18 chr1 38969798 38969856 -203694497 - MER5A DNA MER1_type 0 189 140 2321 78 3 0 chr1 38969856 38970150 -203694203 + AluSp SINE Alu 1 295 -18 505 238 143 18 chr1 38970150 38970259 -203694094 - MER5A DNA MER1_type -49 140 1 211 294 78 88 chr1 38971258 38971360 -203692993 + L2 LINE L2 3192 3292 -21 302 250 0 71 chr1 38972541 38972653 -203691700 + MIR3 SINE MIR 13 116 -92 553 243 201 0 chr1 38973720 38973864 -203690489 - MER5A DNA MER1_type 0 189 17 1648 163 7 29 chr1 38973980 38974286 -203690067 + AluJo SINE Alu 11 309 -3 1874 168 0 0 chr1 38974290 38974600 -203689753 + AluJb SINE Alu 1 310 -2 981 283 128 16 chr1 38975252 38975751 -203688602 + L1MC4a LINE L1 5370 5924 -1884 2214 104 0 0 chr1 38975832 38976129 -203688224 + AluSx SINE Alu 1 297 -15 1436 118 0 10 chr1 38976140 38976344 -203688009 + AluSq SINE Alu 1 202 -111 815 116 0 103 chr1 38976344 38976499 -203687854 + AluSg/x SINE Alu 157 295 -17 30 69 0 0 chr1 38976572 38976630 -203687723 + AT_rich Low_complexity Low_complexity 1 58 0 2003 107 23 7 chr1 38976643 38976942 -203687411 + AluSq SINE Alu 1 304 -9 180 0 0 0 chr1 38976951 38976971 -203687382 + (A)n Simple_repeat Simple_repeat 1 20 0 255 280 133 70 chr1 38976972 38977497 -203686856 + L2 LINE L2 1515 2072 -1242 374 298 81 40 chr1 38979237 38979361 -203684992 + L2 LINE L2 3143 3271 -1 232 200 15 15 chr1 38979361 38979426 -203684927 + (CA)n Simple_repeat Simple_repeat 1 65 0 198 0 0 0 chr1 38980176 38980198 -203684155 + (TTAGG)n Simple_repeat Simple_repeat 2 23 0 301 268 99 63 chr1 38980320 38980462 -203683891 - L2 LINE L2 -1 3271 3125 183 139 0 0 chr1 38982864 38982900 -203681453 + (CCG)n Simple_repeat Simple_repeat 3 38 0 457 327 206 27 chr1 38983554 38984290 -203680063 + L2 LINE L2 1802 2669 -645 882 164 41 77 chr1 38984472 38984533 -203679820 - MER5A DNA MER1_type -1 188 126 2265 99 0 3 chr1 38984533 38984845 -203679508 + AluSq SINE Alu 1 311 -2 882 164 41 77 chr1 38984845 38984978 -203679375 - MER5A DNA MER1_type -63 126 1 1116 185 9 50 chr1 38984992 38985195 -203679158 + MIR SINE MIR 12 207 -55 2180 119 0 0 chr1 38985195 38985506 -203678847 + AluSx SINE Alu 1 311 -1 1116 185 9 50 chr1 38985506 38985524 -203678829 + MIR SINE MIR 207 224 -38 1218 183 66 4 chr1 38985585 38985741 -203678612 - AluJo SINE Alu -20 292 114 192 77 0 0 chr1 38985741 38985767 -203678586 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1218 183 66 4 chr1 38985767 38985851 -203678502 - AluJo SINE Alu -198 114 37 206 280 54 65 chr1 38985944 38986037 -203678316 + L2 LINE L2 3180 3271 -42 1921 108 80 0 chr1 38986392 38986679 -203677674 - AluSx SINE Alu -2 310 1 2218 102 7 0 chr1 38986682 38986987 -203677366 - AluSp SINE Alu -6 307 1 1175 148 141 28 chr1 38987687 38987770 -203676583 - MER33 DNA MER1_type -2261 324 252 2018 117 0 7 chr1 38987770 38988092 -203676261 + AluY SINE Alu 1 311 0 1175 148 141 28 chr1 38988092 38988164 -203676189 - MER33 DNA MER1_type -2333 252 190 2059 110 3 0 chr1 38988164 38988454 -203675899 + AluSg SINE Alu 1 291 -19 1175 148 141 28 chr1 38988454 38988588 -203675765 - MER33 DNA MER1_type -2395 190 1 320 354 78 39 chr1 38988641 38988898 -203675455 - L2 LINE L2 -181 3091 2825 1085 168 0 24 chr1 38989159 38989367 -203674986 + AluJo SINE Alu 93 295 -17 13119 115 22 26 chr1 38989367 38989589 -203674764 - Tigger1 DNA MER2_type -398 2020 1799 2397 77 0 0 chr1 38989589 38989900 -203674453 + AluY SINE Alu 1 311 0 13119 115 22 26 chr1 38989900 38990443 -203673910 - Tigger1 DNA MER2_type -619 1799 1255 2131 114 0 0 chr1 38990443 38990741 -203673612 + AluSg SINE Alu 1 298 -12 13119 115 22 26 chr1 38990741 38991678 -203672675 - Tigger1 DNA MER2_type -1163 1255 324 1714 155 0 39 chr1 38991678 38991987 -203672366 + AluJb SINE Alu 1 297 -15 13119 115 22 26 chr1 38991987 38992307 -203672046 - Tigger1 DNA MER2_type -2094 324 4 562 213 9 0 chr1 38993104 38993212 -203671141 + FLAM_A SINE Alu 2 110 -32 291 28 0 0 chr1 38993220 38993256 -203671097 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1549 183 6 31 chr1 38993276 38993593 -203670760 + AluJo SINE Alu 3 311 -1 2289 99 0 0 chr1 38993669 38993971 -203670382 + AluSx SINE Alu 1 302 -10 2401 64 0 3 chr1 38994067 38994365 -203669988 - AluY SINE Alu -12 299 3 847 143 0 8 chr1 38994436 38994562 -203669791 - FLAM_C SINE Alu -16 127 3 2151 101 13 0 chr1 38994591 38994889 -203669464 - AluSx SINE Alu -10 302 1 698 243 100 36 chr1 38994894 38995310 -203669043 + L1ME2 LINE L1 5401 5957 -207 2442 55 3 0 chr1 38995571 38995881 -203668472 + AluY SINE Alu 1 311 0 195 253 172 0 chr1 38995909 38995971 -203668382 + MIR SINE MIR 42 112 -105 45 19 0 0 chr1 38996093 38996145 -203668208 + AT_rich Low_complexity Low_complexity 1 52 0 245 348 26 9 chr1 38996180 38996295 -203668058 + L2 LINE L2 2659 2775 -539 795 268 25 54 chr1 38996537 38996576 -203667777 - L1ME1 LINE L1 -4 6162 6123 2264 67 27 0 chr1 38996576 38996875 -203667478 + AluSq SINE Alu 1 307 -6 795 268 25 54 chr1 38996875 38997189 -203667164 - L1ME1 LINE L1 -43 6123 5819 701 188 7 32 chr1 38997238 38997392 -203666961 - L1ME1 LINE L1 -341 5825 5676 1460 129 66 56 chr1 38997398 38997701 -203666652 - AluJo SINE Alu -5 307 2 1258 221 54 4 chr1 38997701 38997977 -203666376 - L1ME1 LINE L1 -1137 5009 4720 1539 217 104 75 chr1 38997978 38998026 -203666327 - MLT1E LTR MaLR -3 590 545 2267 90 0 37 chr1 38998026 38998161 -203666192 + AluSx SINE Alu 1 139 -173 1861 118 0 50 chr1 38998161 38998480 -203665873 + AluSg SINE Alu 1 304 0 2267 90 0 37 chr1 38998480 38998666 -203665687 + AluSx SINE Alu 139 311 -1 1539 217 104 75 chr1 38998666 38999118 -203665235 - MLT1E LTR MaLR -48 545 101 1268 213 20 38 chr1 38999127 38999175 -203665178 - L1ME1 LINE L1 -1417 4729 4682 378 0 0 0 chr1 38999175 38999217 -203665136 + (TG)n Simple_repeat Simple_repeat 2 43 0 1268 213 20 38 chr1 38999217 38999515 -203664838 - L1ME1 LINE L1 -1464 4682 4389 1643 166 36 0 chr1 38999539 38999840 -203664513 - AluJb SINE Alu 0 312 1 2078 119 0 0 chr1 39000027 39000320 -203664033 - AluSg SINE Alu -17 293 1 2081 102 7 23 chr1 39000394 39000697 -203663656 - AluSq SINE Alu -13 300 3 2086 134 10 0 chr1 39000698 39001003 -203663350 - AluSx SINE Alu -4 308 1 329 352 16 16 chr1 39001270 39001398 -203662955 + L2 LINE L2 3182 3309 -4 256 295 77 0 chr1 39001878 39001956 -203662397 - L2 LINE L2 -5 3267 3184 411 294 113 13 chr1 39001962 39002201 -203662152 + L1MEc LINE L1 1373 1889 -4327 1671 163 0 25 chr1 39002206 39002526 -203661827 + AluJo SINE Alu 1 312 0 2561 191 31 28 chr1 39002529 39003101 -203661252 + L1MB4 LINE L1 5325 5898 -282 1262 167 9 9 chr1 39003195 39003417 -203660936 - AluJb SINE Alu -90 222 1 953 188 0 12 chr1 39003417 39003607 -203660746 - FAM SINE Alu 0 175 2 492 91 246 18 chr1 39003617 39003727 -203660626 + L1MA10 LINE L1 6199 6333 -1 452 211 179 47 chr1 39003714 39003904 -203660449 + L1ME3A LINE L1 5956 6170 0 * 485 326 168 10 chr1 39003943 39004329 -203660024 + L2 LINE L2 1548 1994 -1320 676 161 69 0 chr1 39004349 39004479 -203659874 - MIR SINE MIR -46 216 78 567 335 170 26 chr1 39004485 39004574 -203659779 + L2 LINE L2 1972 2047 -1267 183 42 0 0 chr1 39004574 39004598 -203659755 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2062 103 0 0 chr1 39004600 39004881 -203659472 - AluSg SINE Alu -29 281 1 567 335 170 26 chr1 39004881 39005453 -203658900 + L2 LINE L2 2047 2732 -582 669 169 8 32 chr1 39005781 39005905 -203658448 + FLAM_A SINE Alu 2 122 -11 309 100 0 0 chr1 39005917 39005957 -203658396 + tRNA-Thr-ACT tRNA tRNA 1 40 -37 1144 112 17 6 chr1 39006000 39006178 -203658175 + FRAM SINE Alu 1 175 -1 566 168 80 24 chr1 39006395 39006520 -203657833 - AluSp SINE Alu -180 133 2 425 257 128 34 chr1 39007911 39008090 -203656263 - MIR SINE MIR -49 213 18 2385 75 0 3 chr1 39008250 39008557 -203655796 - AluY SINE Alu -5 306 1 580 133 89 0 chr1 39008829 39008919 -203655434 + FLAM_A SINE Alu 4 101 -41 2140 103 3 0 chr1 39008934 39009226 -203655127 + AluSg SINE Alu 1 293 -17 2242 78 20 0 chr1 39009360 39009656 -203654697 - AluY SINE Alu -9 302 1 195 314 38 29 chr1 39010025 39010130 -203654223 - L2 LINE L2 -1654 1660 1555 214 347 103 60 chr1 39010246 39010733 -203653620 - L3 LINE CR1 -356 1221 711 1845 106 28 14 chr1 39010733 39011017 -203653336 - AluSq SINE Alu -20 293 6 1675 171 17 3 chr1 39011778 39012077 -203652276 + AluJo SINE Alu 1 303 -9 1416 183 95 0 chr1 39013094 39013368 -203650985 + AluJo SINE Alu 1 300 -12 185 361 15 30 chr1 39013368 39013501 -203650852 + L2 LINE L2 1776 1906 -1408 304 322 35 0 chr1 39013756 39013843 -203650510 - L2 LINE L2 -14 3258 3169 2305 103 3 0 chr1 39014068 39014369 -203649984 - AluSx SINE Alu -10 302 1 224 211 0 0 chr1 39014658 39014696 -203649657 + L2 LINE L2 3209 3246 -26 190 319 53 60 chr1 39015600 39015834 -203648519 + L3 LINE CR1 1170 1451 -126 278 333 11 0 chr1 39016229 39016319 -203648034 + L3 LINE CR1 1294 1384 -193 792 187 8 0 chr1 39016341 39016475 -203647878 - AluSg/x SINE Alu -38 274 140 1361 187 211 54 chr1 39016814 39017190 -203647163 - L1ME3A LINE L1 -5 6165 5701 2232 107 0 3 chr1 39017190 39017488 -203646865 + AluSx SINE Alu 1 297 -15 1361 187 211 54 chr1 39017488 39017576 -203646777 - L1ME3A LINE L1 -469 5701 5628 344 222 14 0 chr1 39017580 39017652 -203646701 - L1ME3A LINE L1 -563 5558 5486 238 200 25 38 chr1 39017944 39018024 -203646329 - L1MEd LINE L1 -5987 132 54 1009 302 40 34 chr1 39018191 39018483 -203645870 + L2 LINE L2 1901 2199 -1115 2619 49 0 7 chr1 39018483 39018791 -203645562 + AluY SINE Alu 1 306 -5 1009 302 40 34 chr1 39018791 39018942 -203645411 + L2 LINE L2 2199 2347 -967 184 0 97 0 chr1 39018964 39018995 -203645358 + T-rich Low_complexity Low_complexity 2 35 0 2236 89 0 3 chr1 39018997 39019279 -203645074 - AluSg SINE Alu -29 281 1 2518 70 0 0 chr1 39019426 39019725 -203644628 - AluY SINE Alu -11 300 2 661 311 48 64 chr1 39019781 39020221 -203644132 + L2 LINE L2 2833 3265 -7 241 335 214 0 chr1 39021467 39021649 -203642704 - MIR SINE MIR -14 248 28 901 228 50 0 chr1 39022203 39022383 -203641970 - MER5A DNA MER1_type 0 189 1 199 167 0 0 chr1 39022515 39022551 -203641802 - MIR SINE MIR -25 237 202 496 299 71 11 chr1 39022583 39022767 -203641586 - MIR SINE MIR -59 203 9 2061 132 7 13 chr1 39022771 39023075 -203641278 - AluSx SINE Alu -10 302 1 221 238 30 109 chr1 39023128 39023229 -203641124 + L2 LINE L2 2716 2808 -506 * 373 323 157 14 chr1 39023206 39023423 -203640930 - MIR SINE MIR -6 256 9 598 200 291 6 chr1 39024405 39024580 -203639773 - MIR SINE MIR -6 256 32 2023 121 0 30 chr1 39024943 39025263 -203639090 - AluSx SINE Alu 0 312 1 189 0 0 0 chr1 39027691 39027712 -203636641 + (T)n Simple_repeat Simple_repeat 1 21 0 372 103 0 0 chr1 39028988 39029046 -203635307 + (CCTG)n Simple_repeat Simple_repeat 2 59 0 225 65 0 0 chr1 39030633 39030664 -203633689 + (CAG)n Simple_repeat Simple_repeat 2 32 0 318 311 146 49 chr1 39030984 39031456 -203632897 - L2 LINE L2 -706 2608 2091 952 284 110 15 chr1 39033686 39034077 -203630276 - MLT1L LTR MaLR -62 553 126 217 224 158 43 chr1 39034145 39034273 -203630080 - MIR SINE MIR -47 161 21 748 197 98 102 chr1 39034597 39034695 -203629658 - L1M LINE L1 -743 5403 5306 1530 140 39 49 chr1 39034695 39034981 -203629372 - AluJb SINE Alu -18 294 12 748 197 98 102 chr1 39034981 39035229 -203629124 - L1M LINE L1 -840 5306 5081 355 236 28 57 chr1 39035418 39035524 -203628829 - L2 LINE L2 -1 3312 3210 446 279 85 0 chr1 39036231 39036360 -203627993 - MIR SINE MIR -46 216 77 21 36 0 0 chr1 39036397 39036425 -203627928 + AT_rich Low_complexity Low_complexity 1 28 0 285 215 21 65 chr1 39036496 39036589 -203627764 - L2 LINE L2 -1 3312 3224 182 342 25 42 chr1 39036733 39036853 -203627500 - L2 LINE L2 -338 2976 2859 209 333 51 0 chr1 39036883 39036961 -203627392 - L2 LINE L2 -528 2786 2705 24 53 0 0 chr1 39037496 39037534 -203626819 + GC_rich Low_complexity Low_complexity 1 38 0 189 219 0 0 chr1 39038228 39038269 -203626084 + MIR SINE MIR 156 196 -66 23 33 0 0 chr1 39038962 39038992 -203625361 + AT_rich Low_complexity Low_complexity 1 30 0 2029 145 7 0 chr1 39039770 39040080 -203624273 + AluJo SINE Alu 1 312 0 2027 88 0 18 chr1 39041049 39041322 -203623031 - AluSx SINE Alu -5 307 40 430 140 0 0 chr1 39042820 39042903 -203621450 - AluSq SINE Alu 0 308 226 1000 109 0 0 chr1 39042903 39043031 -203621322 - AluSq SINE Alu -185 128 1 926 130 0 0 chr1 39043154 39043277 -203621076 - FLAM_C SINE Alu -16 127 5 1866 109 64 4 chr1 39043544 39043811 -203620542 + AluSq SINE Alu 16 298 -15 1793 163 10 10 chr1 39043820 39044115 -203620238 + AluSg SINE Alu 1 295 -15 2283 105 0 10 chr1 39044389 39044695 -203619658 - AluSx SINE Alu -9 303 1 300 229 90 62 chr1 39044705 39044849 -203619504 - L1ME4a LINE L1 0 6121 5974 299 264 83 45 chr1 39044889 39045154 -203619199 - L1MC4a LINE L1 -1913 5895 5621 761 161 75 40 chr1 39045865 39046039 -203618314 + L1MC1 LINE L1 6154 6333 0 257 338 0 0 chr1 39046050 39046124 -203618229 + MIR3 SINE MIR 89 162 -46 1360 217 124 52 chr1 39046154 39046483 -203617870 - L1MC5 LINE L1 -30 7931 7627 2400 85 0 0 chr1 39046483 39046778 -203617575 - AluSx SINE Alu -17 295 1 1360 217 124 52 chr1 39046778 39047038 -203617315 - L1MC5 LINE L1 -334 7627 7300 2511 245 126 22 chr1 39047039 39047855 -203616498 + L2 LINE L2 1836 2736 -578 456 207 69 35 chr1 39047856 39047972 -203616381 + L1M4 LINE L1 4706 4825 -1321 486 201 194 22 chr1 39047986 39048120 -203616233 + MIR SINE MIR 58 214 -48 939 153 0 7 chr1 39048122 39048272 -203616081 + AluJb SINE Alu 1 149 -163 241 235 0 0 chr1 39048279 39048330 -203616023 + MIR SINE MIR 204 254 -8 225 296 82 10 chr1 39048375 39048473 -203615880 - MIR SINE MIR -97 165 61 943 255 33 24 chr1 39048672 39049005 -203615348 - L1M4 LINE L1 -2364 3782 3447 2630 156 101 63 chr1 39049125 39049416 -203614937 - L1MB2 LINE L1 0 6171 5892 1956 119 0 18 chr1 39049416 39049702 -203614651 - AluSx SINE Alu -14 298 18 2630 156 101 63 chr1 39049702 39049713 -203614640 - L1MB2 LINE L1 -279 5892 5883 2011 147 7 0 chr1 39049713 39050012 -203614341 - AluSq SINE Alu -12 301 1 1895 130 27 23 chr1 39050013 39050312 -203614041 - AluJb SINE Alu -12 300 1 2630 156 101 63 chr1 39050312 39050620 -203613733 - L1MB2 LINE L1 -287 5884 5535 584 196 143 0 chr1 39050648 39050760 -203613593 - FLAM_A SINE Alu -5 128 1 442 78 0 65 chr1 39050946 39051023 -203613330 - AluSx SINE Alu 0 309 238 1333 130 0 16 chr1 39051023 39051215 -203613138 - AluSx SINE Alu -123 189 1 1603 173 20 30 chr1 39051223 39051523 -203612830 - AluSx SINE Alu -15 297 1 538 232 0 63 chr1 39051622 39051764 -203612589 - FLAM_C SINE Alu 0 133 1 424 291 76 38 chr1 39053257 39053415 -203610938 - MIR3 SINE MIR -7 201 38 243 0 0 0 chr1 39053511 39053538 -203610815 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 232 213 75 64 chr1 39053690 39053784 -203610569 + L2 LINE L2 2203 2297 -1017 1025 152 6 0 chr1 39054341 39054505 -203609848 + FAM SINE Alu 1 48 -1 2067 95 0 51 chr1 39054628 39054943 -203609410 - AluSg SINE Alu -11 299 1 21 0 0 0 chr1 39055331 39055352 -203609001 + AT_rich Low_complexity Low_complexity 1 21 0 2282 109 3 0 chr1 39055352 39055654 -203608699 - AluSp SINE Alu -10 303 1 1459 161 58 34 chr1 39056031 39056322 -203608031 - AluJo SINE Alu -14 298 1 2351 95 0 0 chr1 39056352 39056646 -203607707 + AluSc SINE Alu 1 294 -15 2131 120 20 0 chr1 39057362 39057662 -203606691 - AluSx SINE Alu -6 306 1 1864 146 34 3 chr1 39057804 39058098 -203606255 - AluJb SINE Alu -7 305 3 4714 133 32 76 chr1 39058276 39058548 -203605805 - L1MB7 LINE L1 -10 6174 5892 2196 121 20 0 chr1 39058548 39058854 -203605499 - AluSx SINE Alu 0 312 1 4714 133 32 76 chr1 39058854 39058961 -203605392 - L1MB7 LINE L1 -292 5892 5782 1919 137 77 51 chr1 39058961 39059297 -203605056 + MER7A DNA MER2_type 4 346 0 4714 133 32 76 chr1 39059297 39059559 -203604794 - L1MB7 LINE L1 -402 5782 5510 872 179 0 15 chr1 39059559 39059693 -203604660 + FLAM_C SINE Alu 2 133 0 4714 133 32 76 chr1 39059693 39059939 -203604414 - L1MB7 LINE L1 -674 5510 5336 2051 107 53 4 chr1 39059939 39060220 -203604133 - AluSx SINE Alu -14 298 4 4714 133 32 76 chr1 39060220 39060458 -203603895 - L1MB7 LINE L1 -848 5336 5089 238 267 0 0 chr1 39060819 39060879 -203603474 - L1ME LINE L1 -294 5827 5768 248 301 68 0 chr1 39061032 39061105 -203603248 - L2 LINE L2 -9 3304 3227 489 157 101 0 chr1 39061256 39061345 -203603008 - MER7A DNA MER2_type -250 96 1 255 366 99 4 chr1 39061462 39061694 -203602659 - L2 LINE L2 -459 2855 2602 652 269 58 46 chr1 39061938 39062002 -203602351 - Charlie7 DNA MER1_type -2289 323 261 2025 145 0 10 chr1 39062002 39062306 -203602047 - AluJb SINE Alu -11 301 1 652 269 58 46 chr1 39062306 39062501 -203601852 - Charlie7 DNA MER1_type -2351 261 61 288 326 144 50 chr1 39062625 39063041 -203601312 - L2 LINE L2 -824 2490 2115 1983 128 9 35 chr1 39063041 39063360 -203600993 - AluSx SINE Alu -1 311 1 288 326 144 50 chr1 39063360 39063479 -203600874 - L2 LINE L2 -1199 2115 2009 2095 122 7 20 chr1 39063479 39063782 -203600571 + AluSx SINE Alu 1 299 -13 288 326 144 50 chr1 39063782 39063806 -203600547 - L2 LINE L2 -1305 2009 1877 2291 105 0 0 chr1 39063855 39064150 -203600203 + AluSx SINE Alu 1 295 -17 21 36 0 0 chr1 39064162 39064190 -203600163 + AT_rich Low_complexity Low_complexity 1 28 0 1589 191 3 26 chr1 39064190 39064494 -203599859 + AluJo SINE Alu 1 297 -15 2236 115 0 0 chr1 39064512 39064808 -203599545 + AluSg SINE Alu 1 296 -14 1813 132 30 0 chr1 39064819 39065084 -203599269 + AluJb SINE Alu 30 302 -10 21 36 0 0 chr1 39065597 39065625 -203598728 + AT_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr1 39066283 39066330 -203598023 + AT_rich Low_complexity Low_complexity 1 47 0 311 250 120 20 chr1 39066378 39066478 -203597875 - MIR SINE MIR -63 145 36 873 184 0 0 chr1 39066764 39066900 -203597453 + FRAM SINE Alu 20 155 -21 852 152 0 0 chr1 39066937 39067062 -203597291 + FLAM_C SINE Alu 1 125 -18 2316 82 0 25 chr1 39067344 39067662 -203596691 - AluY SINE Alu -1 310 1 21 0 0 0 chr1 39067671 39067692 -203596661 + AT_rich Low_complexity Low_complexity 1 21 0 775 317 116 53 chr1 39067732 39068480 -203595873 - L3 LINE CR1 -80 1497 703 203 250 0 0 chr1 39068498 39068538 -203595815 - L2 LINE L2 -11 3302 3263 2563 64 0 0 chr1 39068673 39068984 -203595369 + AluY SINE Alu 1 311 0 272 167 0 0 chr1 39068990 39069044 -203595309 + L1 LINE L1 4773 4826 -1320 340 277 116 53 chr1 39069312 39069621 -203594732 + L1ME LINE L1 5387 5714 -456 26 0 0 0 chr1 39069761 39069787 -203594566 + AT_rich Low_complexity Low_complexity 1 26 0 187 284 27 14 chr1 39070234 39070308 -203594045 - L2 LINE L2 -844 2470 2396 231 275 14 0 chr1 39070496 39070565 -203593788 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 5961 92 28 1 chr1 39070565 39071410 -203592943 - L1PA13 LINE L1 -20 6143 5276 2385 94 0 0 chr1 39071621 39071930 -203592423 + AluSg SINE Alu 1 309 -1 2380 95 3 0 chr1 39072232 39072536 -203591817 - AluSp SINE Alu -8 305 1 2436 212 65 43 chr1 39073609 39073811 -203590542 - L1MC4 LINE L1 0 8042 7846 1759 170 7 7 chr1 39073811 39074126 -203590227 - AluSx SINE Alu 0 315 1 2436 212 65 43 chr1 39074126 39074672 -203589681 - L1MC4 LINE L1 -196 7846 7276 * 4297 163 69 28 chr1 39074669 39075558 -203588795 - L1MB3 LINE L1 0 6183 5259 566 172 57 0 chr1 39075651 39075773 -203588580 - L1MB3 LINE L1 -874 5272 5144 2133 213 145 126 chr1 39075773 39076049 -203588304 - L1MC4a LINE L1 -601 7207 6938 1652 148 18 115 chr1 39076049 39076433 -203587920 - MER7A DNA MER2_type 0 346 2 2133 213 145 126 chr1 39076433 39076642 -203587711 - L1MC4a LINE L1 -870 6938 6734 183 80 0 0 chr1 39076642 39076667 -203587686 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2133 213 145 126 chr1 39076667 39077137 -203587216 - L1MC4a LINE L1 -1074 6734 6274 195 42 0 0 chr1 39077137 39077161 -203587192 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1652 184 11 0 chr1 39077161 39077438 -203586915 - AluJo SINE Alu -32 280 1 2133 213 145 126 chr1 39077438 39077568 -203586785 - L1MC4a LINE L1 -1534 6274 6148 2101 123 23 0 chr1 39077568 39077870 -203586483 - AluSx SINE Alu -3 309 1 2133 213 145 126 chr1 39077870 39078286 -203586067 - L1MC4a LINE L1 -1660 6148 5674 1814 156 0 58 chr1 39079100 39079408 -203584945 - AluJb SINE Alu -22 290 1 27 29 0 0 chr1 39079532 39079566 -203584787 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr1 39079982 39080004 -203584349 + AT_rich Low_complexity Low_complexity 1 22 0 638 259 72 55 chr1 39080353 39080940 -203583413 - L1MC5 LINE L1 -54 7907 7311 235 236 132 19 chr1 39081107 39081213 -203583140 - L1MC4 LINE L1 -821 7221 7104 527 189 27 9 chr1 39081240 39081351 -203583002 - L1MC4 LINE L1 -1126 6916 6804 * 886 269 158 42 chr1 39081336 39081931 -203582422 - L1MC4 LINE L1 -748 5398 5197 183 42 0 0 chr1 39081953 39081977 -203582376 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 314 289 219 23 chr1 39082164 39082349 -203582004 - L1MC4 LINE L1 -1536 4610 4463 2095 115 48 0 chr1 39082349 39082644 -203581709 - AluSp SINE Alu -2 311 3 314 289 219 23 chr1 39082644 39083376 -203580977 - L1MC4 LINE L1 -1683 4463 3544 183 42 0 0 chr1 39083403 39083427 -203580926 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1209 104 31 0 chr1 39083471 39083664 -203580689 + L1MA3 LINE L1 6102 6300 -5 21 0 0 0 chr1 39083664 39083685 -203580668 + AT_rich Low_complexity Low_complexity 1 21 0 2168 133 0 0 chr1 39083803 39084104 -203580249 - AluJb SINE Alu -11 301 1 2133 87 21 7 chr1 39084616 39084903 -203579450 - AluSq SINE Alu -22 291 1 269 279 103 70 chr1 39085213 39085494 -203578859 - L1MC4 LINE L1 -3105 3041 2771 2481 51 3 0 chr1 39085494 39085787 -203578566 + AluY SINE Alu 1 294 -17 269 279 103 70 chr1 39085787 39086204 -203578149 - L1MC4 LINE L1 -3375 2771 2320 642 255 162 20 chr1 39086839 39087184 -203577169 - HAL1b LINE L1 -607 741 348 516 184 20 0 chr1 39087968 39088066 -203576287 + L1MC4 LINE L1 7943 8042 0 964 126 0 7 chr1 39088557 39088692 -203575661 + AluJo SINE Alu 1 134 -178 660 199 126 11 chr1 39088693 39088954 -203575399 + L1ME3A LINE L1 2874 3164 -2982 457 335 22 16 chr1 39088971 39089156 -203575197 - L2 LINE L2 -554 2760 2575 1549 198 55 45 chr1 39089317 39089696 -203574657 - MLT2C1 LTR ERVL -2 395 13 1442 194 19 66 chr1 39089703 39090023 -203574330 + AluJo SINE Alu 3 307 -5 239 357 107 34 chr1 39090251 39090579 -203573774 - L2 LINE L2 -958 2356 2005 1041 144 22 11 chr1 39090585 39090765 -203573588 + AluJo SINE Alu 119 300 -12 394 278 36 159 chr1 39090858 39091160 -203573193 + L2 LINE L2 2989 3253 -19 224 282 0 28 chr1 39091176 39091247 -203573106 - L2 LINE L2 -190 3082 3014 345 257 56 83 chr1 39091381 39091422 -203572931 + L1ME3A LINE L1 4569 4610 -1536 1547 182 41 3 chr1 39091422 39091713 -203572640 + AluJb SINE Alu 1 302 -10 345 257 56 83 chr1 39091713 39091815 -203572538 + L1ME3A LINE L1 4610 4708 -1438 485 242 85 122 chr1 39092270 39092817 -203571536 + L1ME3A LINE L1 5315 5874 -296 1929 154 3 0 chr1 39092830 39093123 -203571230 + AluSx SINE Alu 13 306 -6 2224 131 0 0 chr1 39093125 39093430 -203570923 + AluSx SINE Alu 1 305 -7 2230 121 0 0 chr1 39093457 39093755 -203570598 + AluSx SINE Alu 1 298 -14 1269 104 0 0 chr1 39093755 39093919 -203570434 + AluSg/x SINE Alu 134 297 -15 2445 83 0 0 chr1 39094199 39094500 -203569853 + AluSg SINE Alu 1 301 -9 4130 138 42 8 chr1 39094563 39095292 -203569061 - L1MA9 LINE L1 -5 6307 5554 804 177 29 23 chr1 39095738 39095913 -203568440 + MER104 DNA MER2_type 1 176 -4 1934 161 3 3 chr1 39096003 39096301 -203568052 + AluJb SINE Alu 1 298 -14 199 279 8 108 chr1 39096350 39096479 -203567874 - MIR SINE MIR -15 247 132 2427 55 14 0 chr1 39096638 39096927 -203567426 + AluY SINE Alu 1 293 -18 22 80 0 0 chr1 39097109 39097159 -203567194 + AT_rich Low_complexity Low_complexity 1 50 0 1993 98 39 7 chr1 39097432 39097717 -203566636 + AluSx SINE Alu 1 294 -18 243 325 0 33 chr1 39097761 39097881 -203566472 - HAL1 LINE L1 -615 1892 1777 325 223 209 14 chr1 39097905 39097947 -203566406 - HAL1 LINE L1 -806 1701 1668 235 49 49 0 chr1 39097947 39097988 -203566365 + (TA)n Simple_repeat Simple_repeat 1 43 0 325 223 209 14 chr1 39097988 39098084 -203566269 - HAL1 LINE L1 -839 1668 1536 254 105 53 18 chr1 39098082 39098139 -203566214 - L1MB7 LINE L1 0 6184 6126 * 1937 274 78 20 chr1 39098134 39098836 -203565517 - HAL1 LINE L1 -1451 1056 314 325 256 97 97 chr1 39098847 39099023 -203565330 - HAL1 LINE L1 -2328 179 4 246 301 84 0 chr1 39099034 39099117 -203565236 + L2 LINE L2 3169 3258 -14 1793 235 141 15 chr1 39099141 39099622 -203564731 - MLT1F LTR MaLR 0 542 1 1453 228 105 12 chr1 39099622 39100127 -203564226 + L1ME LINE L1 3062 3613 -2533 2261 106 7 0 chr1 39100150 39100453 -203563900 - AluSg SINE Alu -3 307 3 848 146 0 161 chr1 39100454 39100659 -203563694 - FRAM SINE Alu -4 172 1 2336 243 122 25 chr1 39100702 39101363 -203562990 + L1ME LINE L1 3880 4476 -1670 1751 120 4 12 chr1 39101363 39101621 -203562732 + AluSx SINE Alu 36 291 -21 266 0 29 0 chr1 39101621 39101655 -203562698 + (TA)n Simple_repeat Simple_repeat 1 35 0 2336 243 122 25 chr1 39101655 39102094 -203562259 + L1ME LINE L1 4475 5087 -1059 1980 142 7 3 chr1 39102094 39102390 -203561963 - AluSx SINE Alu -15 297 1 963 198 105 73 chr1 39102398 39102468 -203561885 + L1ME LINE L1 5132 5198 -966 1487 184 59 7 chr1 39102468 39102756 -203561597 + AluJo SINE Alu 1 303 -9 963 198 105 73 chr1 39102756 39102900 -203561453 + L1ME LINE L1 5198 5336 -828 2174 118 7 0 chr1 39102900 39103197 -203561156 + AluSq SINE Alu 1 299 -14 963 198 105 73 chr1 39103197 39103407 -203560946 + L1ME LINE L1 5336 5575 -589 1934 148 0 3 chr1 39103407 39103716 -203560637 + AluSx SINE Alu 1 308 0 963 198 105 73 chr1 39103716 39103747 -203560606 + L1ME LINE L1 5575 5604 -560 1845 170 156 3 chr1 39103748 39104107 -203560246 + MER47B DNA MER2_type 5 418 0 1944 94 0 0 chr1 39104119 39104373 -203559980 - AluSx SINE Alu -23 289 36 243 259 78 0 chr1 39104397 39104513 -203559840 + L1M4 LINE L1 4414 4538 -1608 411 299 40 88 chr1 39104626 39105051 -203559302 - L1ME LINE L1 -351 5819 5409 265 204 171 0 chr1 39105053 39105141 -203559212 - L1ME LINE L1 -1002 5357 5255 358 299 78 13 chr1 39105223 39105377 -203558976 - L1ME LINE L1 -1022 5124 4961 2018 88 53 18 chr1 39105482 39105766 -203558587 + AluSx SINE Alu 1 294 -18 776 267 138 54 chr1 39105769 39106562 -203557791 - L1ME LINE L1 -1459 4687 3829 26 0 0 0 chr1 39107176 39107202 -203557151 + AT_rich Low_complexity Low_complexity 1 26 0 2232 105 3 16 chr1 39107365 39107680 -203556673 + AluSx SINE Alu 1 311 -1 383 216 137 46 chr1 39107690 39107877 -203556476 + L1PA8A LINE L1 5639 5839 -303 1909 144 10 10 chr1 39108438 39108729 -203555624 - AluSx SINE Alu -21 291 1 2398 85 0 7 chr1 39108736 39109043 -203555310 - AluSx SINE Alu -7 305 1 514 32 0 0 chr1 39109220 39109283 -203555070 - AluY SINE Alu -235 75 13 1614 81 0 0 chr1 39109284 39109481 -203554872 + AluSg/x SINE Alu 85 281 -31 309 51 0 0 chr1 39109484 39109523 -203554830 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 254 213 83 102 chr1 39109581 39109689 -203554664 + L2 LINE L2 3206 3311 -2 2159 122 3 0 chr1 39109826 39110121 -203554232 + AluSp SINE Alu 3 298 -15 303 28 0 0 chr1 39110121 39110157 -203554196 + (TA)n Simple_repeat Simple_repeat 2 37 0 873 148 0 15 chr1 39110284 39110419 -203553934 + FLAM_C SINE Alu 1 133 0 22 35 0 0 chr1 39111007 39111036 -203553317 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 39111489 39111509 -203552844 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 987 179 41 37 chr1 39113369 39113587 -203550766 - MER20 DNA MER1_type 0 219 1 809 183 43 38 chr1 39113781 39113826 -203550527 - MER3 DNA MER1_type -22 187 144 2039 128 17 0 chr1 39113826 39114115 -203550238 + AluSq SINE Alu 1 294 -19 809 183 43 38 chr1 39114115 39114255 -203550098 - MER3 DNA MER1_type -65 144 1 338 186 193 41 chr1 39115620 39115765 -203548588 - L1ME4a LINE L1 -86 6035 5869 2502 78 0 3 chr1 39116341 39116650 -203547703 - AluY SINE Alu -3 308 1 1955 158 7 0 chr1 39116733 39117037 -203547316 + AluSx SINE Alu 1 306 -6 2311 78 14 0 chr1 39117037 39117330 -203547023 + AluSp SINE Alu 1 297 -16 302 182 15 0 chr1 39117330 39117396 -203546957 + GA-rich Low_complexity Low_complexity 1 67 0 266 267 0 89 chr1 39117988 39118078 -203546275 + MIR SINE MIR 3 84 -178 458 289 80 52 chr1 39118115 39118364 -203545989 + MIR SINE MIR 6 261 -1 1765 150 45 3 chr1 39118477 39118764 -203545589 + AluJo SINE Alu 14 312 0 32 17 7 0 chr1 39118949 39119028 -203545325 + AT_rich Low_complexity Low_complexity 1 39 0 735 192 0 17 chr1 39119209 39119329 -203545024 + FLAM_A SINE Alu 11 128 -14 1980 157 0 7 chr1 39119351 39119650 -203544703 - AluJo SINE Alu -15 297 1 831 154 15 15 chr1 39119650 39119786 -203544567 - AluJo SINE Alu -176 136 1 2381 88 3 0 chr1 39120575 39120869 -203543484 - AluSx SINE Alu -17 295 1 2464 86 0 0 chr1 39120901 39121202 -203543151 + AluY SINE Alu 1 301 -10 4524 182 68 9 chr1 39121290 39122104 -203542249 - MER21B LTR ERV1 -1 862 1 323 345 0 0 chr1 39122150 39122263 -203542090 + MIR SINE MIR 42 154 -108 2489 149 5 34 chr1 39122268 39122594 -203541759 - MER57A LTR ERV1 0 403 90 2309 100 0 0 chr1 39122594 39122893 -203541460 - AluSx SINE Alu -13 299 1 2489 149 5 34 chr1 39122893 39122981 -203541372 - MER57A LTR ERV1 -313 90 1 643 128 21 0 chr1 39123029 39123123 -203541230 - MER57A-int LTR ERV1 -54 7483 7388 247 163 41 0 chr1 39123123 39123172 -203541181 - LTR54B LTR ERV1 -214 284 234 439 155 0 0 chr1 39123172 39123243 -203541110 - MER57A-int LTR ERV1 -202 7335 7265 767 103 26 0 chr1 39123243 39123359 -203540994 - LTR54B LTR ERV1 -377 121 3 4211 128 19 57 chr1 39123359 39124030 -203540323 - MER57A-int LTR ERV1 -391 7146 6505 1855 161 0 7 chr1 39124030 39124328 -203540025 + AluJb SINE Alu 1 296 -16 4211 128 19 57 chr1 39124328 39124405 -203539948 - MER57A-int LTR ERV1 -1032 6505 6427 1723 113 32 4 chr1 39124435 39124683 -203539670 - AluSc SINE Alu -54 255 1 3261 193 5 27 chr1 39124683 39124844 -203539509 - MER57A-int LTR ERV1 -1092 6445 6282 2154 91 47 10 chr1 39124844 39125142 -203539211 - AluSc SINE Alu 0 309 1 3261 193 5 27 chr1 39125142 39125616 -203538737 - MER57A-int LTR ERV1 -1255 6282 5824 3924 162 26 33 chr1 39125944 39126172 -203538181 - MER57A-int LTR ERV1 -1716 5821 5593 2033 119 0 11 chr1 39126172 39126483 -203537870 - AluSx SINE Alu 0 308 1 3924 162 26 33 chr1 39126483 39127013 -203537340 - MER57A-int LTR ERV1 -1944 5593 5067 1946 123 3 11 chr1 39127018 39127329 -203537024 - AluSx SINE Alu 0 309 1 2154 110 0 4 chr1 39127338 39127643 -203536710 - AluSg SINE Alu 0 304 1 370 82 0 0 chr1 39127643 39127692 -203536661 + MADE1 DNA Mariner 32 80 0 2850 141 45 50 chr1 39127724 39128340 -203536013 - MER57A-int LTR ERV1 -1830 4501 3889 3570 175 20 97 chr1 39128343 39128474 -203535879 - MER57A-int LTR ERV1 -6756 781 642 1785 165 7 10 chr1 39128474 39128765 -203535588 - AluJb SINE Alu -9 303 14 3570 175 20 97 chr1 39128765 39129061 -203535292 - MER57A-int LTR ERV1 -6895 642 325 2244 96 36 0 chr1 39129061 39129363 -203534990 + AluSq SINE Alu 1 313 0 3570 175 20 97 chr1 39129363 39129780 -203534573 - MER57A-int LTR ERV1 -7212 325 1 2556 159 18 0 chr1 39129780 39130176 -203534177 - MER57A LTR ERV1 0 403 1 1959 170 7 0 chr1 39130548 39130848 -203533505 - AluJb SINE Alu -10 302 1 807 114 0 0 chr1 39131094 39131199 -203533154 - AluSg/x SINE Alu -11 301 197 2064 143 0 10 chr1 39132167 39132468 -203531885 + AluSx SINE Alu 1 298 -14 1912 148 3 3 chr1 39132529 39132819 -203531534 - AluSx SINE Alu -22 290 1 26 30 0 0 chr1 39132826 39132859 -203531494 + AT_rich Low_complexity Low_complexity 1 33 0 315 315 21 28 chr1 39132915 39133058 -203531295 + MIR SINE MIR 57 198 -64 692 225 134 22 chr1 39133058 39133289 -203531064 - MIR SINE MIR 0 262 6 21 0 0 0 chr1 39133792 39133813 -203530540 + AT_rich Low_complexity Low_complexity 1 21 0 2354 74 0 7 chr1 39133907 39134205 -203530148 + AluY SINE Alu 1 296 -15 529 278 13 20 chr1 39134292 39134443 -203529910 + MIR SINE MIR 2 151 -111 1089 197 0 122 chr1 39134495 39134658 -203529695 - AluSp SINE Alu -55 258 145 5548 23 3 0 chr1 39134658 39135262 -203529091 - L1PA3 LINE L1 0 6155 5550 1089 197 0 122 chr1 39135262 39135392 -203528961 - AluSp SINE Alu -168 145 1 452 110 0 0 chr1 39135394 39135467 -203528886 - L1MCa LINE L1 -4108 2318 2246 514 153 24 65 chr1 39135488 39135612 -203528741 + MIR SINE MIR 143 261 -1 2501 74 0 6 chr1 39135795 39136107 -203528246 - AluY SINE Alu -1 310 1 2340 95 0 0 chr1 39136108 39136404 -203527949 - AluSx SINE Alu -16 296 1 1839 182 3 13 chr1 39136631 39136944 -203527409 + AluJb SINE Alu 1 310 -2 273 267 86 29 chr1 39136974 39137079 -203527274 + L1ME LINE L1 5456 5566 -555 633 108 21 0 chr1 39137096 39137189 -203527164 - AluJ/FLAM SINE Alu -216 96 2 1934 167 113 34 chr1 39137195 39137582 -203526771 - L1MCa LINE L1 -4112 2314 1872 917 174 23 12 chr1 39137582 39137754 -203526599 - FAM SINE Alu -1 174 1 1934 167 113 34 chr1 39137754 39137898 -203526455 - L1MCa LINE L1 -4554 1872 1741 3943 145 39 72 chr1 39137989 39138803 -203525550 - L1MB3 LINE L1 -72 6111 5323 1615 162 42 35 chr1 39138803 39139087 -203525266 - AluJo SINE Alu -22 290 5 1991 117 0 86 chr1 39139120 39139254 -203525099 + AluSx SINE Alu 2 146 -166 2264 97 0 31 chr1 39139254 39139574 -203524779 + AluSq SINE Alu 1 310 -3 1991 117 0 86 chr1 39139574 39139764 -203524589 + AluSx SINE Alu 146 298 -14 1825 146 13 23 chr1 39139769 39140070 -203524283 + AluJb SINE Alu 1 298 -14 518 72 0 60 chr1 39140965 39141048 -203523305 - MER51A LTR ERV1 -71 563 486 1288 152 0 10 chr1 39141622 39141819 -203522534 + AluJb SINE Alu 95 289 -23 208 268 18 0 chr1 39141906 39141962 -203522391 + MIR3 SINE MIR 144 200 -8 2601 56 0 3 chr1 39142162 39142465 -203521888 + AluY SINE Alu 1 302 -9 236 284 102 15 chr1 39142735 39142932 -203521421 - L1M4 LINE L1 -3371 2775 2562 2040 109 14 7 chr1 39143095 39143407 -203520946 - AluSq SINE Alu 0 314 1 2095 118 3 7 chr1 39143649 39143946 -203520407 + AluSx SINE Alu 1 296 -16 2433 81 0 3 chr1 39144657 39144966 -203519387 - AluY SINE Alu -3 308 1 2441 86 0 0 chr1 39145625 39145928 -203518425 + AluSc SINE Alu 1 303 -6 777 198 0 0 chr1 39145941 39146057 -203518296 - FLAM_A SINE Alu -17 116 1 215 0 67 0 chr1 39146154 39146184 -203518169 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2373 102 0 0 chr1 39147202 39147506 -203516847 + AluSx SINE Alu 1 304 -8 2584 65 0 0 chr1 39147642 39147952 -203516401 - AluY SINE Alu -1 310 1 727 229 43 16 chr1 39148129 39148317 -203516036 + MIR SINE MIR 65 257 -5 21 0 0 0 chr1 39148343 39148364 -203515989 + AT_rich Low_complexity Low_complexity 1 21 0 189 250 15 44 chr1 39148423 39148491 -203515862 - MIR SINE MIR -38 224 159 2004 150 13 0 chr1 39148496 39148796 -203515557 - AluSx SINE Alu -8 304 1 359 302 180 6 chr1 39149257 39149429 -203514924 + MIR SINE MIR 52 253 -9 24 0 0 0 chr1 39149563 39149587 -203514766 + AT_rich Low_complexity Low_complexity 1 24 0 582 155 0 0 chr1 39150305 39150389 -203513964 - FLAM_A SINE Alu -39 103 20 1879 159 7 17 chr1 39150474 39150775 -203513578 + AluJb SINE Alu 1 298 -14 2066 106 3 60 chr1 39150800 39151153 -203513200 - AluSx SINE Alu 0 312 1 3630 169 19 28 chr1 39151555 39151641 -203512712 + L1M2a LINE L1 4 89 -7079 2160 123 7 0 chr1 39151641 39151933 -203512420 - AluSx SINE Alu -18 294 1 1932 131 0 81 chr1 39151933 39152254 -203512099 - AluSq SINE Alu -18 295 1 3630 169 19 28 chr1 39152254 39152799 -203511554 + L1M2a LINE L1 87 630 -6538 1319 96 0 17 chr1 39152821 39152999 -203511354 + AluSx SINE Alu 1 175 -137 300 89 0 54 chr1 39152999 39153055 -203511298 + FAM SINE Alu 127 179 0 922 213 53 31 chr1 39153074 39153299 -203511054 + L1M2a LINE L1 684 913 -6255 4062 160 47 117 chr1 39153325 39153374 -203510979 + L1M2a LINE L1 2121 2172 -4996 2159 104 7 0 chr1 39153374 39153662 -203510691 + AluSp SINE Alu 1 290 -23 4062 160 47 117 chr1 39153662 39154009 -203510344 + L1M2a LINE L1 2172 2541 -4627 1952 142 7 7 chr1 39154009 39154305 -203510048 + AluJb SINE Alu 1 296 -16 4062 160 47 117 chr1 39154305 39154603 -203509750 + L1M2a LINE L1 2541 2858 -4310 621 156 0 0 chr1 39154603 39154693 -203509660 + FRAM SINE Alu 55 144 -32 264 30 0 0 chr1 39154693 39154726 -203509627 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 4062 160 47 117 chr1 39154726 39155124 -203509229 + L1M2a LINE L1 2856 3223 -3945 1491 152 7 65 chr1 39155128 39155418 -203508935 - AluJo SINE Alu -39 273 1 1608 125 146 20 chr1 39155434 39155649 -203508704 + L1PA16 LINE L1 5816 6079 -87 2361 109 0 0 chr1 39155649 39155953 -203508400 + AluSc SINE Alu 1 304 -5 1608 125 146 20 chr1 39155953 39156032 -203508321 + L1PA16 LINE L1 6079 6147 -19 3024 157 51 147 chr1 39156041 39156615 -203507738 + L1M2a LINE L1 3229 3856 -3311 2195 120 7 0 chr1 39156615 39156907 -203507446 + AluSx SINE Alu 1 294 -18 3024 157 51 147 chr1 39156907 39156922 -203507431 + L1M2a LINE L1 3856 3871 -3296 2331 90 7 7 chr1 39156922 39157222 -203507131 + AluSx SINE Alu 2 301 -11 1236 189 145 8 chr1 39157227 39157526 -203506827 - AluJb SINE Alu 0 333 1 3024 157 51 147 chr1 39157526 39157546 -203506807 + L1M2a LINE L1 3875 3895 -3272 795 111 0 0 chr1 39157546 39157645 -203506708 - AluS SINE Alu -212 100 2 3024 157 51 147 chr1 39157645 39157849 -203506504 + L1M2a LINE L1 3895 4061 -3106 1448 179 99 0 chr1 39157850 39158113 -203506240 + AluJo SINE Alu 1 289 -23 5815 134 72 4 chr1 39158120 39159099 -203505254 + L1MA5 LINE L1 5254 6298 -2 1462 129 9 0 chr1 39159154 39159364 -203504989 + AluJb SINE Alu 14 225 -87 189 0 0 0 chr1 39159374 39159395 -203504958 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 343 240 208 8 chr1 39159515 39159640 -203504713 + MER103 DNA DNA 16 165 -1 1908 147 16 3 chr1 39159680 39159986 -203504367 - AluSg SINE Alu 0 310 1 1617 153 3 93 chr1 39159988 39160157 -203504196 - AluJo SINE Alu -9 303 177 1844 79 9 0 chr1 39160157 39160386 -203503967 - AluSc SINE Alu -6 303 73 1617 153 3 93 chr1 39160386 39160549 -203503804 - AluJo SINE Alu -135 177 1 1622 168 0 11 chr1 39160663 39160954 -203503399 - AluJo SINE Alu 0 321 34 1968 164 0 3 chr1 39161010 39161315 -203503038 + AluSx SINE Alu 1 304 -8 536 225 106 12 chr1 39161808 39161968 -203502385 + L1MC5 LINE L1 7737 7911 -50 219 218 0 0 chr1 39162975 39163030 -203501323 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2499 74 0 7 chr1 39163142 39163451 -203500902 - AluSc SINE Alu -2 307 1 186 209 0 0 chr1 39163750 39163793 -203500560 + (TA)n Simple_repeat Simple_repeat 2 44 0 2215 112 10 0 chr1 39164106 39164400 -203499953 + AluSq SINE Alu 1 297 -16 24 32 0 0 chr1 39165801 39165832 -203498521 + AT_rich Low_complexity Low_complexity 1 31 0 219 211 0 0 chr1 39167595 39167633 -203496720 + (TG)n Simple_repeat Simple_repeat 2 39 0 1338 98 0 11 chr1 39168571 39168745 -203495608 - AluSg/x SINE Alu -9 303 132 23 33 0 0 chr1 39170073 39170103 -203494250 + AT_rich Low_complexity Low_complexity 1 30 0 1397 183 21 8 chr1 39170216 39170457 -203493896 - AluJo SINE Alu -68 244 1 2470 90 0 0 chr1 39170509 39170819 -203493534 + AluSq SINE Alu 1 310 -3 2329 92 0 13 chr1 39171294 39171597 -203492756 + AluSg SINE Alu 1 299 -11 2457 89 0 0 chr1 39171739 39172042 -203492311 + AluSc SINE Alu 1 303 -6 1218 111 0 0 chr1 39172232 39172385 -203491968 + AluSq SINE Alu 1 153 -160 606 74 0 0 chr1 39172385 39172466 -203491887 + AluSg/x SINE Alu 215 295 -15 2438 79 3 22 chr1 39172690 39173008 -203491345 + AluSq SINE Alu 1 312 -1 1273 91 108 0 chr1 39173839 39174015 -203490338 + AluSg SINE Alu 1 195 -115 727 124 0 0 chr1 39174153 39174266 -203490087 + AluSg SINE Alu 199 311 -1 195 69 0 0 chr1 39174517 39174546 -203489807 + (CA)n Simple_repeat Simple_repeat 1 29 0 623 212 8 8 chr1 39174795 39174927 -203489426 + FLAM_A SINE Alu 1 132 -1 390 269 38 51 chr1 39175351 39175521 -203488832 + MIR3 SINE MIR 15 181 -69 1825 155 4 4 chr1 39175521 39175799 -203488554 - AluJo SINE Alu -18 294 17 2355 113 3 0 chr1 39176186 39176496 -203487857 + AluSq SINE Alu 1 311 -2 278 26 26 0 chr1 39177602 39177641 -203486712 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 294 310 241 0 chr1 39179005 39179163 -203485190 + MIR SINE MIR 47 242 -20 22 35 0 0 chr1 39179525 39179554 -203484799 + AT_rich Low_complexity Low_complexity 1 29 0 2418 97 0 3 chr1 39179555 39179864 -203484489 - AluSg SINE Alu -2 308 1 1599 181 47 7 chr1 39179876 39180153 -203484200 - AluJo SINE Alu -24 288 1 933 202 0 12 chr1 39180172 39180340 -203484013 + FRAM SINE Alu 1 158 -18 2250 97 7 3 chr1 39180481 39180779 -203483574 - AluSx SINE Alu -13 299 1 2141 128 0 0 chr1 39181062 39181368 -203482985 - AluSx SINE Alu 0 306 1 1788 145 10 56 chr1 39181428 39181731 -203482622 + AluJb SINE Alu 1 289 -23 1790 150 41 27 chr1 39181903 39182196 -203482157 + AluJb SINE Alu 1 297 -15 1089 75 8 0 chr1 39182405 39182538 -203481815 + AluSq/x SINE Alu 1 134 -179 589 88 0 118 chr1 39182587 39182610 -203481743 + AluSc SINE Alu 110 134 -175 2624 64 0 3 chr1 39182610 39182922 -203481431 + AluY SINE Alu 1 311 0 589 88 0 118 chr1 39182922 39183000 -203481353 + AluSc SINE Alu 134 199 -110 333 151 0 0 chr1 39183000 39183053 -203481300 - AluJb SINE Alu -171 131 79 600 111 0 0 chr1 39183053 39183143 -203481210 + AluSg/x SINE Alu 207 296 -14 242 176 29 0 chr1 39183754 39183822 -203480531 + (TAA)n Simple_repeat Simple_repeat 1 70 0 1898 128 31 17 chr1 39184058 39184347 -203480006 + AluSx SINE Alu 1 293 -19 2247 95 16 7 chr1 39184355 39184661 -203479692 + AluSx SINE Alu 1 309 -3 2456 84 0 13 chr1 39185184 39185492 -203478861 + AluSx SINE Alu 1 304 -8 2104 137 3 3 chr1 39185759 39186058 -203478295 + AluSx SINE Alu 1 299 -13 2544 83 0 3 chr1 39186069 39186381 -203477972 + AluY SINE Alu 1 311 0 2212 104 7 0 chr1 39188016 39188294 -203476059 + AluSx SINE Alu 1 280 -32 213 108 0 0 chr1 39188297 39188334 -203476019 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 574 254 29 0 chr1 39188509 39188647 -203475706 + MIR SINE MIR 31 172 -90 229 277 106 11 chr1 39188797 39188891 -203475462 + MIR SINE MIR 114 216 -46 1036 121 0 0 chr1 39188997 39189172 -203475181 - AluSg/x SINE Alu 0 319 145 220 309 18 73 chr1 39189193 39189303 -203475050 - L3 LINE CR1 -852 725 622 22 0 0 0 chr1 39189367 39189389 -203474964 + AT_rich Low_complexity Low_complexity 1 22 0 2160 118 3 0 chr1 39189392 39189679 -203474674 - AluSx SINE Alu -24 288 1 936 125 0 7 chr1 39189679 39189815 -203474538 - AluJo SINE Alu -177 135 1 501 220 0 0 chr1 39189851 39189951 -203474402 - FLAM_A SINE Alu -41 101 2 1706 158 10 20 chr1 39190004 39190302 -203474051 + AluJb SINE Alu 1 295 -17 26 0 0 0 chr1 39190780 39190806 -203473547 + GC_rich Low_complexity Low_complexity 1 26 0 204 40 0 0 chr1 39191884 39191909 -203472444 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 2366 98 0 16 chr1 39191914 39192231 -203472122 - AluSx SINE Alu 0 312 1 494 284 40 0 chr1 39192567 39192715 -203471638 - MER117 DNA MER1_type -39 158 5 278 149 0 0 chr1 39195777 39195824 -203468529 - Tigger5 DNA MER2_type -35 2288 2242 257 164 0 36 chr1 39195822 39195877 -203468476 + Tigger5 DNA MER2_type 2266 2318 -5 * 355 167 69 14 chr1 39195880 39195952 -203468401 - Tigger5 DNA MER2_type -2247 76 1 268 340 102 5 chr1 39196003 39196200 -203468153 + L2 LINE L2 2660 2875 -439 184 281 113 18 chr1 39196343 39196564 -203467789 - L2 LINE L2 -1137 2177 1936 784 170 0 22 chr1 39196588 39196723 -203467630 + FLAM_A SINE Alu 2 133 0 1546 157 52 30 chr1 39196986 39197291 -203467062 + AluJb SINE Alu 1 312 0 2130 145 7 0 chr1 39197300 39197610 -203466743 + AluJo SINE Alu 1 312 0 568 302 33 58 chr1 39199177 39199419 -203464934 - MIR SINE MIR -13 249 14 241 183 366 0 chr1 39200847 39200918 -203463435 - FLAM_A SINE Alu -12 121 25 192 97 0 0 chr1 39206594 39206625 -203457728 + (CAG)n Simple_repeat Simple_repeat 1 31 0 410 291 8 0 chr1 39207050 39207167 -203457186 - MIR SINE MIR -29 233 116 2257 95 26 7 chr1 39207299 39207605 -203456748 - AluSx SINE Alu 0 312 1 212 270 168 22 chr1 39207714 39207851 -203456502 + L2 LINE L2 2890 3046 -226 1402 161 64 115 chr1 39208010 39208174 -203456179 + L1MB8 LINE L1 5656 5827 -351 735 175 8 0 chr1 39208174 39208294 -203456059 + FLAM_A SINE Alu 1 121 -12 1402 161 64 115 chr1 39208294 39208308 -203456045 + L1MB8 LINE L1 5827 5840 -338 1633 143 70 18 chr1 39208308 39208580 -203455773 + AluJb SINE Alu 1 286 -26 1402 161 64 115 chr1 39208580 39208790 -203455563 + L1MB8 LINE L1 5840 6025 -153 1037 136 0 7 chr1 39208790 39208937 -203455416 - AluJb SINE Alu -90 222 77 637 139 29 29 chr1 39208937 39209074 -203455279 + L1MB8 LINE L1 6033 6169 -9 2337 110 0 3 chr1 39209076 39209384 -203454969 - AluSx SINE Alu -5 307 1 1728 166 63 3 chr1 39209392 39209676 -203454677 - AluJb SINE Alu -11 301 1 2347 80 0 3 chr1 39209682 39209969 -203454384 - AluY SINE Alu -10 301 16 2304 115 0 16 chr1 39209982 39210295 -203454058 - AluSx SINE Alu -4 308 1 2211 125 0 0 chr1 39210323 39210619 -203453734 + AluSq SINE Alu 1 296 -17 2239 96 0 14 chr1 39210621 39210935 -203453418 + AluSc SINE Alu 1 309 0 2254 77 42 0 chr1 39210937 39211209 -203453144 + AluY SINE Alu 1 287 -24 201 39 0 0 chr1 39211209 39211235 -203453118 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2254 77 42 0 chr1 39211235 39211247 -203453106 + AluY SINE Alu 287 297 -14 306 316 0 0 chr1 39211621 39211697 -203452656 + MIR SINE MIR 53 128 -80 347 231 43 43 chr1 39211722 39211839 -203452514 - MIR SINE MIR -29 233 117 411 258 111 83 chr1 39211992 39212077 -203452276 - MIR SINE MIR -34 228 147 1922 149 10 17 chr1 39212077 39212379 -203451974 + AluJb SINE Alu 1 300 -12 411 258 111 83 chr1 39212379 39212402 -203451951 - MIR SINE MIR -115 147 126 2190 95 37 0 chr1 39212402 39212698 -203451655 + AluSx SINE Alu 1 307 -5 411 258 111 83 chr1 39212698 39212805 -203451548 - MIR SINE MIR -136 126 6 272 256 105 60 chr1 39213395 39213528 -203450825 - MIR SINE MIR -28 234 96 2053 138 7 7 chr1 39213533 39213831 -203450522 + AluJb SINE Alu 1 298 -14 245 271 47 19 chr1 39214721 39214828 -203449525 + MIR3 SINE MIR 8 117 -91 443 268 0 0 chr1 39215858 39215955 -203448398 + MIR SINE MIR 48 144 -64 257 88 0 242 chr1 39215963 39215991 -203448362 + MER41A LTR ERV1 398 431 -123 1946 89 41 89 chr1 39215991 39216307 -203448046 - AluSc SINE Alu -8 301 1 257 88 0 242 chr1 39216307 39216332 -203448021 + MER41A LTR ERV1 431 424 -130 2428 64 0 10 chr1 39216332 39216643 -203447710 - AluY SINE Alu -3 308 1 257 88 0 242 chr1 39216643 39216679 -203447674 + MER41A LTR ERV1 423 466 -88 1783 125 0 84 chr1 39216883 39217203 -203447150 - AluSx SINE Alu -19 293 1 367 324 130 43 chr1 39217692 39217965 -203446388 + L2 LINE L2 1983 2311 -1003 1501 146 15 23 chr1 39217965 39218225 -203446128 - AluJo SINE Alu -16 296 39 367 324 130 43 chr1 39218225 39218396 -203445957 + L2 LINE L2 2311 2466 -848 2444 53 0 0 chr1 39218415 39218714 -203445639 - AluY SINE Alu -12 299 1 315 284 0 0 chr1 39218804 39218878 -203445475 - MER91A DNA MER1_type -121 75 2 223 269 0 30 chr1 39218987 39219054 -203445299 + L2 LINE L2 3201 3265 -7 520 304 65 0 chr1 39219150 39219318 -203445035 - MER5A DNA MER1_type 0 189 11 2376 73 0 3 chr1 39220448 39220748 -203443605 + AluY SINE Alu 1 299 -12 305 325 47 12 chr1 39220902 39221071 -203443282 + L2 LINE L2 2917 3091 -181 1810 139 21 10 chr1 39222196 39222484 -203441869 + AluJo SINE Alu 6 296 -16 290 331 50 8 chr1 39223048 39223169 -203441184 - L2 LINE L2 -224 3048 2923 1004 216 15 58 chr1 39223954 39224155 -203440198 - MIR SINE MIR 0 262 73 948 120 0 8 chr1 39224155 39224288 -203440065 + FLAM_C SINE Alu 2 133 0 1004 216 15 58 chr1 39224288 39224345 -203440008 - MIR SINE MIR -189 73 15 422 344 68 10 chr1 39224503 39224695 -203439658 - MIR SINE MIR -30 232 30 311 259 170 0 chr1 39225315 39225427 -203438926 + MIR SINE MIR 16 146 -116 372 329 58 7 chr1 39225436 39225573 -203438780 - MIR SINE MIR -71 191 48 364 260 10 10 chr1 39225607 39225707 -203438646 + MIR SINE MIR 162 261 -1 306 310 70 0 chr1 39226292 39226411 -203437942 - MIR SINE MIR -63 145 17 1779 120 19 0 chr1 39226620 39226879 -203437474 + AluSx SINE Alu 38 301 -11 2272 107 0 0 chr1 39226879 39227188 -203437165 + AluSg SINE Alu 1 309 -1 258 32 0 0 chr1 39227189 39227220 -203437133 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 2278 101 0 0 chr1 39227220 39227517 -203436836 + AluSx SINE Alu 3 299 -13 2222 113 0 0 chr1 39227525 39227825 -203436528 + AluSg SINE Alu 6 305 -5 1981 106 50 10 chr1 39227850 39228151 -203436202 + AluSq SINE Alu 1 313 0 252 333 114 0 chr1 39228211 39228325 -203436028 + MIR SINE MIR 19 145 -63 183 245 174 31 chr1 39228512 39228610 -203435743 + MIR3 SINE MIR 5 116 -92 287 219 68 0 chr1 39228614 39228687 -203435666 - MIR SINE MIR -83 179 102 195 319 44 48 chr1 39228974 39229244 -203435109 + L2 LINE L2 2475 2743 -571 213 257 28 28 chr1 39229940 39230084 -203434269 + (TG)n Simple_repeat Simple_repeat 2 145 0 236 286 99 0 chr1 39231087 39231178 -203433175 - MIR SINE MIR -79 183 84 38 85 0 0 chr1 39231470 39231564 -203432789 + GC_rich Low_complexity Low_complexity 1 94 0 23 33 0 0 chr1 39231701 39231731 -203432622 + GC_rich Low_complexity Low_complexity 1 30 0 276 325 24 0 chr1 39232127 39232250 -203432103 - L2 LINE L2 -553 2761 2636 753 243 4 0 chr1 39232877 39233357 -203430996 + (TG)n Simple_repeat Simple_repeat 1 482 0 677 247 134 0 chr1 39233975 39234161 -203430192 + MIR SINE MIR 2 212 -50 373 260 9 49 chr1 39234787 39234932 -203429421 + MIR3 SINE MIR 45 186 -22 404 314 58 7 chr1 39235025 39235162 -203429191 + MIR SINE MIR 8 151 -111 1047 233 9 18 chr1 39235182 39235401 -203428952 - MIR SINE MIR -10 252 36 2260 85 3 0 chr1 39235453 39235747 -203428606 + AluSc SINE Alu 15 309 0 2192 68 14 0 chr1 39235758 39236059 -203428294 + AluSp SINE Alu 1 305 0 905 191 0 0 chr1 39236059 39236299 -203428054 + AluJo/FRAM SINE Alu 137 376 0 2129 123 0 0 chr1 39236301 39236601 -203427752 + AluSx SINE Alu 1 300 -12 485 231 168 0 chr1 39237432 39237575 -203426778 + MER45A DNA AcHobo 1 167 -11 1482 151 171 0 chr1 39237657 39237915 -203426438 + AluJb SINE Alu 1 302 0 2100 119 0 0 chr1 39237925 39238234 -203426119 - AluSp SINE Alu 0 309 1 381 243 37 28 chr1 39238234 39238341 -203426012 - L2 LINE L2 -12 3301 3194 585 280 91 6 chr1 39238414 39238649 -203425704 - MIR SINE MIR 0 262 4 195 262 272 0 chr1 39238658 39238761 -203425592 + L2 LINE L2 3142 3272 0 359 164 0 0 chr1 39338763 39338818 -203325535 - Alu SINE Alu -248 55 1 250 115 0 131 chr1 39338819 39338843 -203325510 + MER41B LTR ERV1 495 521 -114 2409 64 0 10 chr1 39338843 39339154 -203325199 - AluY SINE Alu -3 308 1 250 115 0 131 chr1 39339154 39339190 -203325163 + MER41B LTR ERV1 521 547 -88 1748 125 0 84 chr1 39339394 39339714 -203324639 - AluSx SINE Alu -19 293 1 344 316 133 43 chr1 39340249 39340476 -203323877 + L2 LINE L2 2032 2237 -1077 1473 146 15 23 chr1 39340476 39340736 -203323617 - AluJo SINE Alu -16 296 39 344 316 133 43 chr1 39340736 39340907 -203323446 + L2 LINE L2 2237 2466 -848 2423 53 0 0 chr1 39340926 39341225 -203323128 - AluY SINE Alu -12 299 1 316 284 0 0 chr1 39341315 39341389 -203322964 - MER91A DNA MER1_type -121 75 2 216 269 0 30 chr1 39341498 39341565 -203322788 + L2 LINE L2 3201 3265 -7 489 304 65 0 chr1 39341661 39341829 -203322524 - MER5A DNA MER1_type 0 189 11 2357 73 0 3 chr1 39342959 39343259 -203321094 + AluY SINE Alu 1 299 -12 290 290 59 24 chr1 39343413 39343582 -203320771 + L2 LINE L2 2917 3091 -181 1781 139 21 10 chr1 39344707 39344995 -203319358 + AluJo SINE Alu 6 296 -16 283 331 50 8 chr1 39345559 39345680 -203318673 - L2 LINE L2 -224 3048 2923 993 216 15 58 chr1 39346465 39346666 -203317687 - MIR SINE MIR 0 262 73 950 120 0 8 chr1 39346666 39346799 -203317554 + FLAM_C SINE Alu 2 133 0 993 216 15 58 chr1 39346799 39346856 -203317497 - MIR SINE MIR -189 73 15 380 292 29 15 chr1 39347064 39347201 -203317152 - MIR SINE MIR -89 173 35 299 259 170 0 chr1 39347826 39347938 -203316415 + MIR SINE MIR 16 146 -116 348 329 58 7 chr1 39347947 39348084 -203316269 - MIR SINE MIR -71 191 48 364 260 10 10 chr1 39348118 39348218 -203316135 + MIR SINE MIR 162 261 -1 284 310 70 0 chr1 39348803 39348922 -203315431 - MIR SINE MIR -63 145 17 1759 120 19 0 chr1 39349131 39349390 -203314963 + AluSx SINE Alu 38 301 -11 2256 91 0 0 chr1 39349390 39349687 -203314666 + AluSg SINE Alu 1 297 -13 258 32 0 0 chr1 39349700 39349731 -203314622 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 2252 101 0 0 chr1 39349731 39350028 -203314325 + AluSx SINE Alu 3 299 -13 2182 117 0 0 chr1 39350036 39350336 -203314017 + AluSg SINE Alu 6 305 -5 1957 106 50 10 chr1 39350361 39350662 -203313691 + AluSq SINE Alu 1 313 0 223 333 114 0 chr1 39350722 39350836 -203313517 + MIR SINE MIR 19 145 -63 283 197 75 0 chr1 39351125 39351198 -203313155 - MIR SINE MIR -31 177 103 213 257 28 28 chr1 39352451 39352595 -203311758 + (TG)n Simple_repeat Simple_repeat 2 145 0 211 286 99 0 chr1 39353598 39353689 -203310664 - MIR SINE MIR -79 183 84 38 85 0 0 chr1 39353981 39354075 -203310278 + GC_rich Low_complexity Low_complexity 1 94 0 23 33 0 0 chr1 39354212 39354242 -203310111 + GC_rich Low_complexity Low_complexity 1 30 0 248 325 24 0 chr1 39354638 39354761 -203309592 - L2 LINE L2 -553 2761 2636 792 198 0 0 chr1 39355388 39355645 -203308708 + (TG)n Simple_repeat Simple_repeat 1 257 0 309 247 12 35 chr1 39355668 39355838 -203308515 + (TG)n Simple_repeat Simple_repeat 1 166 0 1962 110 65 0 chr1 39356196 39356487 -203307866 + AluSq SINE Alu 1 310 -3 577 268 102 21 chr1 39356882 39357117 -203307236 + L2 LINE L2 3011 3264 -49 414 256 136 37 chr1 39357130 39357285 -203307068 - MIR SINE MIR -51 211 32 748 157 0 0 chr1 39357285 39357400 -203306953 - FLAM_C SINE Alu -18 115 1 414 256 136 37 chr1 39357400 39357435 -203306918 - MIR SINE MIR -230 32 2 196 321 62 25 chr1 39357435 39357495 -203306858 + L2 LINE L2 3251 3313 0 21 36 0 0 chr1 39358423 39358451 -203305902 + AT_rich Low_complexity Low_complexity 1 28 0 2142 119 0 3 chr1 39358451 39358761 -203305592 - AluY SINE Alu -2 309 1 1860 80 3 142 chr1 39358761 39359112 -203305241 - AluSx SINE Alu -9 303 1 3123 123 53 47 chr1 39359112 39359691 -203304662 - Tigger1 DNA MER2_type -1810 608 26 403 292 65 27 chr1 39360094 39360279 -203304074 - L2 LINE L2 -5 3308 3117 362 233 14 0 chr1 39360309 39360382 -203303971 + MER58B DNA MER1_type 1 74 -267 1481 159 73 10 chr1 39360385 39360674 -203303679 - AluSg SINE Alu -2 308 2 1877 92 85 0 chr1 39360675 39360957 -203303396 - AluSx SINE Alu -6 306 1 860 164 0 0 chr1 39360958 39361098 -203303255 - FLAM_C SINE Alu -3 140 1 732 167 203 40 chr1 39361100 39361146 -203303207 + MER58B DNA MER1_type 79 116 -2304 2335 83 3 0 chr1 39361146 39361446 -203302907 + AluSp SINE Alu 1 301 -12 732 167 203 40 chr1 39361446 39361621 -203302732 + MER58B DNA MER1_type 116 336 -5 916 305 55 71 chr1 39361652 39361948 -203302405 - L2 LINE L2 -211 3061 2762 2318 62 20 10 chr1 39361948 39362253 -203302100 - AluY SINE Alu -1 310 3 916 305 55 71 chr1 39362253 39362307 -203302046 - L2 LINE L2 -510 2762 2709 2059 125 6 6 chr1 39362307 39362618 -203301735 - AluSx SINE Alu -1 311 1 916 305 55 71 chr1 39362618 39362900 -203301453 - L2 LINE L2 -563 2709 2430 1407 16 0 27 chr1 39363128 39363313 -203301040 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2281 93 10 3 chr1 39363319 39363630 -203300723 - AluSq SINE Alu 0 313 1 191 429 0 0 chr1 39363639 39363765 -203300588 + L2 LINE L2 2421 2546 -768 258 355 158 0 chr1 39363918 39364070 -203300283 + L2 LINE L2 2682 2857 -457 1102 291 119 43 chr1 39364389 39364475 -203299878 + MLT1K LTR MaLR 5 83 -505 2157 116 3 0 chr1 39364475 39364785 -203299568 + AluSx SINE Alu 2 312 0 1102 291 119 43 chr1 39364785 39365237 -203299116 + MLT1K LTR MaLR 83 584 -4 204 342 26 95 chr1 39365589 39365633 -203298720 - MER5B DNA MER1_type -1 177 132 1575 177 7 23 chr1 39365633 39365805 -203298548 - AluJo SINE Alu -7 305 139 1613 171 0 40 chr1 39365805 39366126 -203298227 - AluJo SINE Alu -2 310 3 1575 177 7 23 chr1 39366126 39366263 -203298090 - AluJo SINE Alu -173 139 1 204 342 26 95 chr1 39366263 39366408 -203297945 - MER5B DNA MER1_type -46 132 1 338 0 0 23 chr1 39366447 39366490 -203297863 + (TA)n Simple_repeat Simple_repeat 1 42 0 2117 112 3 7 chr1 39366491 39366787 -203297566 - AluSx SINE Alu -17 295 1 2407 69 0 0 chr1 39366803 39367109 -203297244 - AluY SINE Alu -5 306 1 1355 161 0 27 chr1 39367633 39367857 -203296496 + MER20 DNA MER1_type 1 218 -1 2096 148 6 3 chr1 39367916 39368227 -203296126 + AluJo SINE Alu 1 312 0 2086 143 0 3 chr1 39368227 39368527 -203295826 + AluSx SINE Alu 1 299 -13 392 271 25 25 chr1 39368774 39368892 -203295461 + MIR SINE MIR 20 137 -125 2274 116 0 0 chr1 39369101 39369404 -203294949 + AluSx SINE Alu 1 303 -9 1814 108 12 12 chr1 39370135 39370376 -203293977 + AluSq SINE Alu 1 241 -72 1799 104 121 32 chr1 39370376 39370722 -203293631 - MER51B LTR ERV1 0 377 1 310 140 0 0 chr1 39370722 39370779 -203293574 + AluSq SINE Alu 236 292 -8 2259 98 0 7 chr1 39370862 39371157 -203293196 - AluSc SINE Alu -16 293 1 1164 128 18 0 chr1 39371157 39371321 -203293032 - AluSg/x SINE Alu -7 303 137 2229 127 7 0 chr1 39371325 39371624 -203292729 - AluSx SINE Alu -11 301 1 906 240 60 9 chr1 39371624 39371857 -203292496 - MER63B DNA MER1_type -191 245 1 2531 64 0 3 chr1 39371964 39372261 -203292092 - AluY SINE Alu -13 298 3 225 133 222 0 chr1 39372446 39372491 -203291862 + L2 LINE L2 3193 3247 -66 857 181 8 106 chr1 39372658 39372895 -203291458 + MER20 DNA MER1_type 6 219 0 521 156 167 0 chr1 39373931 39374027 -203290326 + FLAM_C SINE Alu 2 113 -30 1749 126 11 7 chr1 39374066 39374336 -203290017 + AluSx SINE Alu 38 308 -4 1008 73 0 8 chr1 39374340 39374464 -203289889 + AluSq/x SINE Alu 24 146 -166 2217 121 0 3 chr1 39374465 39374771 -203289582 + AluSc SINE Alu 3 307 -2 22 0 0 0 chr1 39374771 39374793 -203289560 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 39374896 39374916 -203289437 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2270 109 0 0 chr1 39374929 39375223 -203289130 - AluSq SINE Alu -19 294 1 1964 117 8 0 chr1 39375223 39375488 -203288865 - AluSx SINE Alu -11 301 35 1773 98 0 0 chr1 39375519 39375744 -203288609 + AluSg/x SINE Alu 83 307 -3 1117 149 0 23 chr1 39375744 39375919 -203288434 + AluSc SINE Alu 139 309 0 761 162 56 22 chr1 39375986 39376165 -203288188 - MER53 DNA DNA -2 187 3 1851 157 3 31 chr1 39376224 39376542 -203287811 - AluJo SINE Alu -3 309 1 313 323 104 10 chr1 39376574 39376766 -203287587 + L2 LINE L2 2612 2821 -493 487 315 194 9 chr1 39376917 39377404 -203286949 - L2 LINE L2 -27 3245 2661 2096 110 3 45 chr1 39377583 39377891 -203286462 - AluSq SINE Alu -18 295 1 2159 116 34 0 chr1 39377951 39378245 -203286108 + AluSq SINE Alu 1 304 -9 410 263 51 0 chr1 39378252 39378370 -203285983 - MIR SINE MIR -16 246 123 226 147 0 0 chr1 39378385 39378419 -203285934 + Alu SINE Alu 1 34 -265 359 253 13 0 chr1 39378467 39378546 -203285807 - MIR SINE MIR -169 93 14 1829 142 7 0 chr1 39378658 39378932 -203285421 + AluSx SINE Alu 1 276 -36 234 0 0 0 chr1 39378934 39378960 -203285393 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 262 290 10 50 chr1 39379429 39379529 -203284824 - MER5A DNA MER1_type 0 189 94 316 119 15 30 chr1 39379854 39379921 -203284432 + AluSp/q SINE Alu 237 302 -1 410 263 51 0 chr1 39379931 39380049 -203284304 - MIR SINE MIR -16 246 123 226 147 0 0 chr1 39380064 39380098 -203284255 + AluJb SINE Alu 1 34 -267 359 253 13 0 chr1 39380146 39380225 -203284128 - MIR SINE MIR -169 93 14 2201 123 0 3 chr1 39380337 39380647 -203283706 + AluSx SINE Alu 1 309 -3 2077 95 0 4 chr1 39380700 39380964 -203283389 - AluSx SINE Alu -22 290 28 346 139 13 0 chr1 39381019 39381098 -203283255 + L1MB3 LINE L1 4976 5055 -1091 2391 106 153 150 chr1 39381136 39381971 -203282382 - pTR5 LTR ERV1 0 2438 1286 646 177 15 15 chr1 39381945 39382075 -203282278 + pTR5 LTR ERV1 1181 1310 -1128 * 673 162 6 75 chr1 39382047 39382220 -203282133 - pTR5 LTR ERV1 -1535 903 743 1960 130 0 0 chr1 39382220 39382489 -203281864 + AluJb SINE Alu 31 299 -13 2521 73 7 0 chr1 39382513 39382816 -203281537 + AluY SINE Alu 1 305 -6 3923 147 14 29 chr1 39382817 39383052 -203281301 + L1MB3 LINE L1 5193 5430 -753 2255 112 0 10 chr1 39383052 39383355 -203280998 + AluSg SINE Alu 1 300 -10 3923 147 14 29 chr1 39383355 39383897 -203280456 + L1MB3 LINE L1 5430 5959 -224 1997 93 0 0 chr1 39383897 39384145 -203280208 + AluSx SINE Alu 42 289 -23 182 222 44 0 chr1 39384448 39384493 -203279860 - MIR SINE MIR -108 154 108 2028 99 7 32 chr1 39385002 39385286 -203279067 + AluSx SINE Alu 1 277 -35 296 327 51 13 chr1 39385387 39385543 -203278810 + MIR SINE MIR 47 208 -54 244 313 10 40 chr1 39385721 39385820 -203278533 + MER5A DNA MER1_type 94 189 0 234 0 0 0 chr1 39386288 39386314 -203278039 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1698 126 15 15 chr1 39386316 39386578 -203277775 - AluSx SINE Alu -36 276 15 254 359 0 0 chr1 39386606 39386684 -203277669 - L2 LINE L2 -14 3258 3181 2291 89 7 7 chr1 39386728 39387031 -203277322 + AluSx SINE Alu 1 303 -9 2165 100 14 4 chr1 39387031 39387347 -203277006 + AluSp SINE Alu 1 319 0 258 56 0 0 chr1 39387544 39387580 -203276773 + (A)n Simple_repeat Simple_repeat 1 36 0 2216 112 3 0 chr1 39387585 39387881 -203276472 + AluY SINE Alu 1 297 -14 994 175 0 12 chr1 39387968 39388139 -203276214 - AluJo SINE Alu -17 295 127 1061 103 0 0 chr1 39388326 39388462 -203275891 + AluSq/x SINE Alu 1 136 -176 1794 145 10 24 chr1 39388462 39388752 -203275601 + AluSq SINE Alu 1 286 -27 936 84 0 17 chr1 39388852 39389001 -203275352 + AluSg/x SINE Alu 167 313 0 310 312 102 19 chr1 39389001 39389216 -203275137 - L1 LINE L1 -2564 3582 3350 1701 181 24 11 chr1 39389222 39389509 -203274844 - AluJo SINE Alu -21 291 1 616 138 9 9 chr1 39389509 39389611 -203274742 - L1M4 LINE L1 -689 5495 5391 2486 68 7 10 chr1 39389612 39389919 -203274434 - AluY SINE Alu -5 306 1 1040 187 32 54 chr1 39389919 39389952 -203274401 - L1M4 LINE L1 -947 5199 5167 2413 84 3 0 chr1 39389952 39390250 -203274103 - AluY SINE Alu -12 299 1 1040 187 32 54 chr1 39390250 39390468 -203273885 - L1M4 LINE L1 -979 5167 4954 1805 171 14 0 chr1 39390468 39390754 -203273599 - AluJo SINE Alu -22 290 1 1040 187 32 54 chr1 39390754 39390817 -203273536 - L1M4 LINE L1 -1192 4954 4891 444 141 0 0 chr1 39390817 39390888 -203273465 + AluSp/q SINE Alu 235 305 -8 2544 74 0 0 chr1 39390889 39391186 -203273167 - AluY SINE Alu -12 299 3 2239 104 0 3 chr1 39391188 39391486 -203272867 - AluSx SINE Alu -15 297 1 934 215 36 65 chr1 39391490 39391537 -203272816 - MER97c DNA MER1_type? -819 271 224 2220 120 3 0 chr1 39391537 39391829 -203272524 + AluSx SINE Alu 3 295 -17 1891 159 10 7 chr1 39391833 39392141 -203272212 + AluJb SINE Alu 1 309 -3 934 215 36 65 chr1 39392141 39392367 -203271986 - MER97c DNA MER1_type? -869 221 1 624 221 0 8 chr1 39392556 39392678 -203271675 + FLAM_A SINE Alu 1 121 -12 2337 80 10 7 chr1 39392750 39393039 -203271314 - AluSp SINE Alu -10 303 14 1498 179 24 16 chr1 39393119 39393370 -203270983 + AluJb SINE Alu 1 253 -59 362 308 19 0 chr1 39393591 39393695 -203270658 - MIR SINE MIR -62 146 41 2061 126 0 17 chr1 39394403 39394697 -203269656 + AluJo SINE Alu 13 301 -11 1940 150 0 46 chr1 39394699 39395026 -203269327 + AluJb SINE Alu 1 312 0 456 320 169 12 chr1 39395073 39395392 -203268961 + L2 LINE L2 2597 2965 -349 1291 130 11 0 chr1 39395413 39395597 -203268756 - AluSg/x SINE Alu -22 290 105 440 236 22 28 chr1 39395597 39395775 -203268578 - AluY SINE Alu -5 306 130 378 301 23 74 chr1 39396371 39396483 -203267870 - MIR SINE MIR -88 174 73 2488 74 0 0 chr1 39396483 39396781 -203267572 - AluSc SINE Alu -11 298 1 378 301 23 74 chr1 39396781 39396844 -203267509 - MIR SINE MIR -189 73 8 3228 235 120 36 chr1 39397315 39398107 -203266246 + L2 LINE L2 1842 2751 -562 2414 80 0 0 chr1 39398107 39398406 -203265947 + AluY SINE Alu 1 299 -12 3228 235 120 36 chr1 39398406 39398764 -203265589 + L2 LINE L2 2751 3077 -236 2290 100 7 3 chr1 39398766 39399067 -203265286 + AluSx SINE Alu 1 302 -10 860 151 0 0 chr1 39399085 39399204 -203265149 + FLAM_C SINE Alu 6 124 -19 555 165 0 0 chr1 39399249 39399346 -203265007 + AluJ/FRAM SINE Alu 216 312 0 26 0 0 0 chr1 39399348 39399374 -203264979 + AT_rich Low_complexity Low_complexity 1 26 0 1838 182 3 0 chr1 39399374 39399681 -203264672 + AluJo SINE Alu 1 308 -4 559 202 47 16 chr1 39399773 39399902 -203264451 + L2 LINE L2 3181 3313 0 630 284 100 61 chr1 39399933 39400585 -203263768 + L2 LINE L2 2591 3267 -5 2024 143 13 0 chr1 39400673 39400981 -203263372 + AluJb SINE Alu 1 312 0 260 291 73 36 chr1 39401836 39401946 -203262407 + L2 LINE L2 3156 3269 -3 233 191 0 0 chr1 39401949 39401991 -203262362 + (TGGG)n Simple_repeat Simple_repeat 1 42 0 435 325 126 5 chr1 39402148 39402339 -203262014 - MIR SINE MIR -48 214 1 429 20 0 0 chr1 39402886 39402936 -203261417 + (CA)n Simple_repeat Simple_repeat 1 50 0 764 233 61 0 chr1 39403189 39403369 -203260984 - MIR SINE MIR -34 228 38 1006 246 42 4 chr1 39404107 39404347 -203260006 + MIR SINE MIR 1 249 -13 256 295 0 0 chr1 39404965 39405043 -203259310 + L2 LINE L2 2972 3049 -223 187 358 52 30 chr1 39405093 39405227 -203259126 + L2 LINE L2 3128 3264 -8 2183 96 0 3 chr1 39405443 39405763 -203258590 + AluSg SINE Alu 1 319 0 712 292 60 9 chr1 39405765 39405998 -203258355 - MIR SINE MIR -3 259 15 396 313 37 12 chr1 39406137 39406300 -203258053 - MIR SINE MIR -66 196 30 181 81 27 27 chr1 39407741 39407778 -203256575 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 239 149 21 0 chr1 39408280 39408327 -203256026 + L1ME2 LINE L1 6099 6146 -18 2305 86 3 26 chr1 39408339 39408641 -203255712 + AluY SINE Alu 1 295 -16 1372 133 13 36 chr1 39408678 39408903 -203255450 + AluJb SINE Alu 88 307 -5 1789 162 69 0 chr1 39409058 39409348 -203255005 - AluJb SINE Alu -2 310 1 2324 105 3 0 chr1 39409920 39410226 -203254127 - AluSx SINE Alu -5 307 1 376 263 109 19 chr1 39410651 39410807 -203253546 + L1MC/D LINE L1 5406 5575 -546 332 315 118 6 chr1 39410815 39410993 -203253360 + L1MC/D LINE L1 5631 5828 -1980 2209 123 7 0 chr1 39411079 39411381 -203252972 + AluSg SINE Alu 1 304 -6 589 109 20 10 chr1 39411389 39411490 -203252863 + MER2 DNA MER2_type 97 198 -147 1315 128 0 0 chr1 39411553 39411732 -203252621 - AluSg/x SINE Alu -19 293 115 333 85 0 0 chr1 39411832 39411879 -203252474 + Alu SINE Alu 245 291 -9 2168 126 0 3 chr1 39411884 39412177 -203252176 - AluSx SINE Alu -20 292 1 967 163 182 1 chr1 39412201 39412422 -203251931 - L1MA8 LINE L1 -37 6254 5991 2416 91 0 16 chr1 39412422 39412731 -203251622 - AluSx SINE Alu -8 304 1 967 163 182 1 chr1 39412731 39412772 -203251581 - L1MA8 LINE L1 -300 5991 5959 607 197 7 35 chr1 39412848 39412990 -203251363 - AluJo SINE Alu -173 139 2 1148 144 154 0 chr1 39412999 39413207 -203251146 - AluJo SINE Alu -10 302 63 322 284 54 143 chr1 39413342 39413439 -203250914 - L2 LINE L2 0 3272 3168 1864 146 61 3 chr1 39413439 39413734 -203250619 - AluSx SINE Alu 0 312 1 322 284 54 143 chr1 39413734 39413745 -203250608 - L2 LINE L2 -104 3168 3158 2338 84 10 0 chr1 39413745 39414041 -203250312 - AluY SINE Alu -12 299 1 322 284 54 143 chr1 39414041 39414232 -203250121 - L2 LINE L2 -114 3158 3012 318 26 0 0 chr1 39414232 39414271 -203250082 + (TG)n Simple_repeat Simple_repeat 1 39 0 322 284 54 143 chr1 39414271 39414360 -203249993 - L2 LINE L2 -260 3012 2917 2194 90 0 4 chr1 39414765 39415043 -203249310 - AluSc SINE Alu -13 296 20 2202 92 3 33 chr1 39415180 39415484 -203248869 + AluY SINE Alu 1 295 -16 1453 124 9 35 chr1 39415521 39415747 -203248606 + AluJb SINE Alu 88 307 -5 1917 174 3 6 chr1 39415902 39416213 -203248140 - AluJb SINE Alu -2 310 1 22 0 0 0 chr1 39416213 39416235 -203248118 + AT_rich Low_complexity Low_complexity 1 22 0 284 294 56 0 chr1 39416508 39416634 -203247719 + L1M4 LINE L1 5008 5140 -1006 2355 67 3 7 chr1 39416673 39416970 -203247383 + AluY SINE Alu 12 307 -4 1672 162 56 3 chr1 39416975 39417259 -203247094 + AluJo SINE Alu 14 312 0 2362 113 0 0 chr1 39417536 39417838 -203246515 + AluSx SINE Alu 1 302 -10 495 60 0 0 chr1 39417963 39418030 -203246323 + (TA)n Simple_repeat Simple_repeat 2 68 0 2368 49 49 3 chr1 39418206 39418491 -203245862 - AluY SINE Alu -13 298 1 2234 196 22 78 chr1 39418742 39419320 -203245033 + MLT2B3 LTR ERVL 1 546 -8 246 135 0 19 chr1 39419521 39419573 -203244780 + L1MB4 LINE L1 6128 6178 -2 287 214 48 63 chr1 39419594 39419720 -203244633 + L1MC4 LINE L1 7918 8041 -1 1708 159 0 23 chr1 39419849 39420158 -203244195 + AluSx SINE Alu 1 302 -10 325 98 0 0 chr1 39420158 39420209 -203244144 + AluJo SINE Alu 83 133 -169 1884 62 112 0 chr1 39420212 39420470 -203243883 + AluY SINE Alu 1 287 -24 701 186 0 159 chr1 39420495 39420715 -203243638 + AluJo SINE Alu 121 305 -7 645 222 0 8 chr1 39421148 39421274 -203243079 + FLAM_C SINE Alu 2 126 -17 1315 199 9 41 chr1 39421284 39421601 -203242752 + AluY SINE Alu 2 308 -3 2124 119 7 0 chr1 39421617 39421927 -203242426 - AluSx SINE Alu 0 312 1 2014 145 0 0 chr1 39421927 39422230 -203242123 - AluSq SINE Alu -10 303 1 1923 101 54 0 chr1 39422243 39422520 -203241833 - AluSp SINE Alu -20 293 2 402 174 0 0 chr1 39422828 39422897 -203241456 + AluJ/FLAM SINE Alu 9 77 -235 188 211 0 19 chr1 39422927 39422979 -203241374 + GA-rich Low_complexity Low_complexity 2 52 0 233 181 83 56 chr1 39422994 39423066 -203241287 + MER3 DNA MER1_type 1 74 -135 2056 81 4 0 chr1 39423212 39423483 -203240870 - AluY SINE Alu -39 272 1 1666 142 0 0 chr1 39423511 39423764 -203240589 + AluSx SINE Alu 1 253 -59 693 221 73 29 chr1 39423907 39424111 -203240242 + MIR SINE MIR 31 243 -19 181 167 71 24 chr1 39424365 39424407 -203239946 - L2 LINE L2 -541 2773 2730 2093 114 0 7 chr1 39424577 39424876 -203239477 + AluSx SINE Alu 3 299 -13 2299 64 3 14 chr1 39425024 39425321 -203239032 + AluSg SINE Alu 1 294 -16 565 122 26 95 chr1 39425968 39426157 -203238196 + SVA Other Other 658 833 -553 878 98 8 0 chr1 39426425 39426547 -203237806 - AluSq/x SINE Alu -189 124 2 1436 126 20 31 chr1 39427135 39427389 -203236964 - AluJo SINE Alu -52 260 10 334 186 39 69 chr1 39427524 39427626 -203236727 + L1MC5 LINE L1 7831 7929 -32 1700 141 0 21 chr1 39427628 39427912 -203236441 + AluJo SINE Alu 1 278 -34 201 121 0 0 chr1 39427912 39427945 -203236408 + (CA)n Simple_repeat Simple_repeat 2 34 0 2156 96 3 10 chr1 39428093 39428396 -203235957 - AluSp SINE Alu -12 301 1 2107 120 0 0 chr1 39428803 39429095 -203235258 - AluSg SINE Alu -16 294 3 2137 106 10 10 chr1 39429097 39429409 -203234944 - AluSx SINE Alu 0 312 1 913 140 0 0 chr1 39429409 39429545 -203234808 - AluSq/x SINE Alu -177 136 1 815 160 0 14 chr1 39429553 39429697 -203234656 - FLAM_C SINE Alu -1 142 1 269 319 99 11 chr1 39430541 39430632 -203233721 - L2 LINE L2 -1 3271 3173 3422 179 75 62 chr1 39430862 39431275 -203233078 + L1M4 LINE L1 3898 4304 -1842 2060 117 3 7 chr1 39431275 39431573 -203232780 + AluSx SINE Alu 1 297 -15 3422 179 75 62 chr1 39431573 39431593 -203232760 + L1M4 LINE L1 4304 4322 -1824 291 28 0 0 chr1 39431593 39431629 -203232724 + (CA)n Simple_repeat Simple_repeat 1 36 0 3422 179 75 62 chr1 39431629 39432138 -203232215 + L1M4 LINE L1 4322 4853 -1293 216 0 0 0 chr1 39432142 39432166 -203232187 + (T)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr1 39434566 39434606 -203229747 + AT_rich Low_complexity Low_complexity 1 40 0 204 40 0 0 chr1 39435028 39435053 -203229300 + (A)n Simple_repeat Simple_repeat 1 25 0 191 291 154 18 chr1 39436012 39436122 -203228231 - MIR SINE MIR -40 222 98 1487 133 4 70 chr1 39436236 39436507 -203227846 + AluSx SINE Alu 1 253 -59 181 281 115 21 chr1 39438820 39438916 -203225437 - L2 LINE L2 -35 3237 3133 2189 114 0 0 chr1 39439690 39439996 -203224357 + AluSx SINE Alu 1 306 -6 634 89 20 10 chr1 39440004 39440105 -203224248 + MER2 DNA MER2_type 97 198 -147 2021 130 0 0 chr1 39440167 39440460 -203223893 - AluSx SINE Alu -19 293 1 1719 80 0 0 chr1 39440486 39440710 -203223643 + AluSg/x SINE Alu 81 304 -8 348 302 29 22 chr1 39440874 39441013 -203223340 + MARNA DNA Mariner 126 265 -321 2022 125 3 3 chr1 39441881 39442193 -203222160 + AluSx SINE Alu 1 312 0 771 92 0 0 chr1 39442514 39442623 -203221730 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 2267 99 3 0 chr1 39442914 39443226 -203221127 - AluSp SINE Alu 0 313 1 243 0 0 0 chr1 39444488 39444515 -203219838 + (CA)n Simple_repeat Simple_repeat 2 28 0 2260 110 0 0 chr1 39444827 39445137 -203219216 + AluSx SINE Alu 1 310 -2 2328 78 3 0 chr1 39445586 39445894 -203218459 + AluY SINE Alu 1 309 -2 598 141 0 0 chr1 39447072 39447157 -203217196 + AluJo SINE Alu 1 85 -227 1769 138 7 0 chr1 39447394 39447670 -203216683 + AluSx SINE Alu 1 278 -34 2243 56 24 0 chr1 39447670 39447958 -203216395 + AluY SINE Alu 1 295 -16 1467 113 9 5 chr1 39449775 39450010 -203214343 + L1PB1 LINE L1 5928 6163 0 822 201 70 61 chr1 39455713 39455927 -203208426 + AluJo SINE Alu 90 305 -7 923 167 8 114 chr1 39455929 39456067 -203208286 + AluJo SINE Alu 1 103 -209 2223 84 0 10 chr1 39456067 39456366 -203207987 - AluSp SINE Alu -17 296 1 923 167 8 114 chr1 39456366 39456473 -203207880 + AluJo SINE Alu 103 220 -92 2162 72 11 7 chr1 39456909 39457187 -203207166 + AluSp SINE Alu 20 298 -15 648 221 0 8 chr1 39457264 39457386 -203206967 - FLAM_A SINE Alu -12 121 1 934 251 35 0 chr1 39457573 39457800 -203206553 + MER97c DNA MER1_type? 1 235 -855 1850 146 3 7 chr1 39457806 39458108 -203206245 - AluJb SINE Alu -11 301 1 1102 122 0 0 chr1 39458112 39458276 -203206077 - AluSg/x SINE Alu -17 295 132 477 116 72 101 chr1 39458276 39458343 -203206010 - MER97b DNA MER1_type? -330 723 660 2109 85 4 4 chr1 39458343 39458624 -203205729 - AluSq SINE Alu -8 305 25 477 116 72 101 chr1 39458624 39458694 -203205659 - MER97b DNA MER1_type? -393 660 590 1767 129 36 26 chr1 39458712 39459014 -203205339 - AluSx SINE Alu -7 305 1 1306 209 73 19 chr1 39459042 39459062 -203205291 - MER97b DNA MER1_type? -443 610 593 1868 167 3 0 chr1 39459062 39459367 -203204986 + AluJo SINE Alu 3 308 -4 1306 209 73 19 chr1 39459367 39459661 -203204692 - MER97b DNA MER1_type? -460 593 279 2164 114 0 3 chr1 39459663 39459971 -203204382 + AluSx SINE Alu 1 307 -5 2328 50 0 0 chr1 39460059 39460366 -203203987 + AluY SINE Alu 1 307 0 1915 104 0 31 chr1 39460377 39460702 -203203651 + AluSg1 SINE Alu 1 316 0 889 142 6 41 chr1 39460702 39460852 -203203501 + AluSg/x SINE Alu 133 278 -32 1694 71 0 0 chr1 39460852 39461064 -203203289 - AluSc SINE Alu -19 290 79 889 142 6 41 chr1 39461064 39461082 -203203271 + AluSg/x SINE Alu 278 295 -15 2021 130 0 0 chr1 39461090 39461383 -203202970 + AluSx SINE Alu 1 293 -19 1031 146 19 63 chr1 39461445 39461554 -203202799 - MER2 DNA MER2_type -147 198 101 2398 82 0 0 chr1 39461554 39461860 -203202493 - AluSx SINE Alu -5 307 2 1031 146 19 63 chr1 39461860 39461955 -203202398 - MER2 DNA MER2_type -244 101 3 1971 118 0 3 chr1 39461974 39462271 -203202082 - AluSx SINE Alu -16 296 1 989 206 28 80 chr1 39462275 39462322 -203202031 - MER97b DNA MER1_type? -782 271 223 2066 120 3 0 chr1 39462322 39462614 -203201739 + AluSx SINE Alu 3 295 -17 1850 146 3 7 chr1 39462618 39462920 -203201433 + AluJb SINE Alu 1 301 -11 989 206 28 80 chr1 39462920 39463153 -203201200 - MER97b DNA MER1_type? -833 220 1 648 221 0 8 chr1 39463340 39463462 -203200891 + FLAM_A SINE Alu 1 121 -12 2282 69 10 7 chr1 39463539 39463830 -203200523 - AluSp SINE Alu -15 298 7 1368 179 24 16 chr1 39463906 39464157 -203200196 + AluJb SINE Alu 1 253 -59 382 289 29 0 chr1 39464378 39464482 -203199871 - MIR SINE MIR -61 147 41 1913 129 0 17 chr1 39465191 39465485 -203198868 + AluJo SINE Alu 13 301 -11 1778 150 0 46 chr1 39465487 39465814 -203198539 + AluJb SINE Alu 1 312 0 493 317 169 12 chr1 39465861 39466180 -203198173 + L2 LINE L2 2597 2965 -349 1775 111 3 89 chr1 39466201 39466382 -203197971 - AluSg SINE Alu -22 288 144 2501 58 0 3 chr1 39466382 39466693 -203197660 - AluY SINE Alu -1 310 1 1775 111 3 89 chr1 39466693 39466826 -203197527 - AluSg SINE Alu -166 144 1 1780 149 3 7 chr1 39466862 39467150 -203197203 - AluJb SINE Alu -16 296 10 368 228 56 62 chr1 39467150 39467312 -203197041 + L2 LINE L2 3142 3302 -11 1646 166 0 67 chr1 39467319 39467503 -203196850 - AluJb SINE Alu -2 310 115 207 100 0 0 chr1 39467503 39467533 -203196820 + (TA)n Simple_repeat Simple_repeat 2 31 0 2111 74 14 0 chr1 39467535 39467818 -203196535 - AluY SINE Alu -24 287 1 2273 77 0 0 chr1 39467823 39468121 -203196232 - AluY SINE Alu -13 298 1 1646 166 0 67 chr1 39468121 39468258 -203196095 - AluJb SINE Alu -202 110 2 498 310 28 86 chr1 39468307 39468466 -203195887 + L2 LINE L2 2551 2718 -596 1999 98 0 44 chr1 39468466 39469073 -203195280 + AluSx SINE Alu 4 285 -27 2459 54 0 19 chr1 39468599 39469073 -203195280 + AluY SINE Alu 1 492 0 184 42 0 0 chr1 39469073 39469097 -203195256 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 498 310 28 86 chr1 39469097 39469226 -203195127 + L2 LINE L2 2716 2823 -491 183 259 111 0 chr1 39469255 39469309 -203195044 - L2 LINE L2 0 3272 3213 197 304 165 41 chr1 39469962 39470156 -203194197 + L2 LINE L2 2809 3026 -246 2284 97 0 3 chr1 39470160 39470460 -203193893 - AluSg SINE Alu -11 299 1 2453 57 0 0 chr1 39470473 39470771 -203193582 - AluY SINE Alu -13 298 1 1823 154 0 4 chr1 39470773 39471053 -203193300 - AluJb SINE Alu -18 294 16 749 207 6 30 chr1 39471054 39471223 -203193130 - MLT1F LTR MaLR -377 165 1 2081 88 3 3 chr1 39471242 39471527 -203192826 + AluY SINE Alu 10 294 -17 590 244 65 79 chr1 39471529 39471808 -203192545 - MLT1L LTR MaLR -340 275 1 474 272 48 0 chr1 39471808 39471933 -203192420 + L2 LINE L2 3183 3313 0 216 329 0 0 chr1 39473285 39473358 -203190995 + G-rich Low_complexity Low_complexity 5 77 0 26 64 0 0 chr1 39474049 39474096 -203190257 + GC_rich Low_complexity Low_complexity 1 47 0 216 232 0 37 chr1 39474113 39474195 -203190158 + CT-rich Low_complexity Low_complexity 1 79 0 256 396 49 37 chr1 39475108 39475353 -203189000 + L2 LINE L2 3026 3273 -40 757 169 34 27 chr1 39475374 39475545 -203188808 - FRAM SINE Alu 0 172 1 348 277 12 0 chr1 39475547 39475630 -203188723 - L2 LINE L2 -9 3304 3221 202 62 62 0 chr1 39475630 39475662 -203188691 + A-rich Low_complexity Low_complexity 3 36 0 1860 135 7 23 chr1 39475666 39475970 -203188383 + AluJb SINE Alu 1 299 -13 198 191 0 0 chr1 39476174 39476221 -203188132 + CT-rich Low_complexity Low_complexity 3 49 0 665 259 104 45 chr1 39478652 39478872 -203185481 - MIR SINE MIR -2 260 28 458 211 240 39 chr1 39480759 39480963 -203183390 + MIR SINE MIR 10 254 -8 2400 82 0 3 chr1 39480963 39481267 -203183086 - AluSp SINE Alu -6 307 5 697 355 100 0 chr1 39482038 39482399 -203181954 - L2 LINE L2 0 3272 2876 207 0 0 0 chr1 39482850 39482873 -203181480 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 770 168 0 23 chr1 39482931 39483062 -203181291 - FLAM_A SINE Alu -2 140 13 211 167 0 0 chr1 39483069 39483105 -203181248 + MIR SINE MIR 117 152 -110 2413 55 0 23 chr1 39483345 39483654 -203180699 - AluY SINE Alu -9 302 1 2278 101 0 0 chr1 39483654 39483951 -203180402 - AluSx SINE Alu -15 297 1 332 294 113 62 chr1 39483951 39484145 -203180208 - MIR SINE MIR -57 205 2 418 297 39 71 chr1 39484491 39484609 -203179744 - MIR SINE MIR -79 183 72 2373 74 0 0 chr1 39484609 39484906 -203179447 - AluSc SINE Alu -12 297 1 418 297 39 71 chr1 39484906 39484969 -203179384 - MIR SINE MIR -190 72 8 3351 239 119 35 chr1 39485440 39486232 -203178121 + L2 LINE L2 1842 2751 -562 2299 80 0 0 chr1 39486232 39486531 -203177822 + AluY SINE Alu 1 299 -12 3351 239 119 35 chr1 39486531 39486889 -203177464 + L2 LINE L2 2751 3077 -236 2176 100 7 3 chr1 39486891 39487191 -203177162 + AluSx SINE Alu 1 301 -11 820 151 0 0 chr1 39487209 39487328 -203177025 + FLAM_C SINE Alu 6 124 -19 591 184 0 0 chr1 39487367 39487470 -203176883 + FRAM SINE Alu 74 176 0 26 0 0 0 chr1 39487472 39487498 -203176855 + AT_rich Low_complexity Low_complexity 1 26 0 1760 182 3 0 chr1 39487498 39487805 -203176548 + AluJo SINE Alu 1 308 -4 514 217 217 11 chr1 39487846 39488026 -203176327 + L2 LINE L2 3097 3313 0 714 299 112 31 chr1 39488057 39488709 -203175644 + L2 LINE L2 2591 3308 -5 1934 143 13 0 chr1 39488797 39489105 -203175248 + AluJb SINE Alu 1 312 0 270 326 54 48 chr1 39489923 39490070 -203174283 + L2 LINE L2 3122 3269 -3 233 191 0 0 chr1 39490073 39490115 -203174238 + (TGGG)n Simple_repeat Simple_repeat 1 42 0 494 314 126 5 chr1 39490272 39490463 -203173890 - MIR SINE MIR -48 214 1 411 21 0 0 chr1 39491008 39491056 -203173297 + (CA)n Simple_repeat Simple_repeat 1 48 0 754 233 61 0 chr1 39491309 39491489 -203172864 - MIR SINE MIR -34 228 38 1045 246 42 4 chr1 39492227 39492467 -203171886 + MIR SINE MIR 1 249 -13 321 389 122 4 chr1 39493086 39493348 -203171005 + L2 LINE L2 2972 3264 -8 2118 92 0 3 chr1 39493564 39493884 -203170469 + AluSg SINE Alu 1 319 0 694 313 52 0 chr1 39493886 39494119 -203170234 - MIR SINE MIR -3 259 15 449 323 30 25 chr1 39494249 39494450 -203169903 - MIR SINE MIR -57 205 4 181 81 27 27 chr1 39495862 39495899 -203168454 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr1 39496535 39496555 -203167798 + (CGG)n Simple_repeat Simple_repeat 3 22 0 198 0 0 0 chr1 39496589 39496611 -203167742 + (CCCGG)n Simple_repeat Simple_repeat 5 26 0 36 77 0 0 chr1 39496837 39496915 -203167438 + GC_rich Low_complexity Low_complexity 1 78 0 541 292 12 36 chr1 39498084 39498252 -203166101 + MIR SINE MIR 85 248 -14 189 0 0 0 chr1 39498555 39498576 -203165777 + (TGGA)n Simple_repeat Simple_repeat 3 23 0 1920 135 7 0 chr1 39498617 39498928 -203165425 + AluSx SINE Alu 1 313 0 997 186 57 38 chr1 39499162 39499372 -203164981 + MER20 DNA MER1_type 5 218 -1 1989 134 20 3 chr1 39499970 39500276 -203164077 + AluJb SINE Alu 1 311 -1 2179 88 6 31 chr1 39500309 39500629 -203163724 + AluSx SINE Alu 1 312 0 871 204 0 12 chr1 39501286 39501473 -203162880 - AluJ SINE Alu 0 304 120 243 170 19 0 chr1 39501487 39501540 -203162813 - MER41A LTR ERV1 -101 453 400 803 141 0 8 chr1 39501551 39501679 -203162674 - AluJ SINE Alu -185 127 1 208 250 200 12 chr1 39502702 39502782 -203161571 - MIR SINE MIR -148 114 20 221 180 60 0 chr1 39502943 39502993 -203161360 + L2 LINE L2 3256 3308 -5 411 298 169 27 chr1 39503840 39504065 -203160288 - MIR SINE MIR -3 259 3 2100 94 14 0 chr1 39504330 39504607 -203159746 - AluSx SINE Alu -31 281 1 985 97 8 0 chr1 39504607 39504741 -203159612 - AluSq/x SINE Alu -177 135 1 220 195 49 49 chr1 39504794 39504876 -203159477 + MIR SINE MIR 87 168 -94 302 319 42 24 chr1 39505125 39505291 -203159062 + L2 LINE L2 2958 3126 -187 1207 171 8 41 chr1 39505300 39505545 -203158808 - AluJb SINE Alu -52 260 24 1713 128 106 4 chr1 39505578 39505851 -203158502 - AluSx SINE Alu -11 301 1 459 145 12 0 chr1 39505867 39505950 -203158403 - MER51A LTR ERV1 -81 553 470 381 311 59 22 chr1 39506011 39506146 -203158207 - L2 LINE L2 -5 3267 3128 571 245 4 137 chr1 39506213 39506336 -203158017 + MIR SINE MIR 43 181 -81 2217 73 42 0 chr1 39506336 39506625 -203157728 + AluY SINE Alu 1 301 -10 1572 101 9 0 chr1 39506625 39506842 -203157511 + AluSc SINE Alu 83 301 -8 2453 46 0 16 chr1 39506842 39507146 -203157207 + AluY SINE Alu 1 299 -12 571 245 4 137 chr1 39507146 39507261 -203157092 + MIR SINE MIR 178 251 -11 2280 81 0 26 chr1 39507591 39507901 -203156452 + AluY SINE Alu 1 302 -9 310 343 6 67 chr1 39508089 39508267 -203156086 - MIR SINE MIR -50 212 46 1655 178 0 31 chr1 39508270 39508557 -203155796 - AluJb SINE Alu -34 278 1 2097 88 0 0 chr1 39508610 39508883 -203155470 - AluSq SINE Alu -9 304 32 370 331 44 28 chr1 39508952 39509133 -203155220 - MIR SINE MIR 0 262 79 211 131 0 167 chr1 39509168 39509252 -203155101 + MIR SINE MIR 114 183 -79 673 291 119 42 chr1 39509389 39509778 -203154575 + L2 LINE L2 2778 3192 -121 1688 192 3 10 chr1 39509860 39510172 -203154181 - AluJb SINE Alu -2 310 1 359 195 20 105 chr1 39510899 39510933 -203153420 + MIR SINE MIR 67 102 -160 2435 71 0 3 chr1 39510933 39511242 -203153111 - AluSc SINE Alu -1 308 1 359 195 20 105 chr1 39511242 39511366 -203152987 + MIR SINE MIR 102 210 -52 2167 94 7 7 chr1 39511748 39512045 -203152308 - AluY SINE Alu -14 297 1 453 233 74 107 chr1 39513432 39513464 -203150889 + MIR SINE MIR 2 34 -228 2243 104 0 0 chr1 39513464 39513763 -203150590 + AluSg1 SINE Alu 1 299 -10 453 233 74 107 chr1 39513763 39513853 -203150500 + MIR SINE MIR 34 125 -137 2384 88 0 16 chr1 39513853 39514170 -203150183 - AluSp SINE Alu 0 313 2 453 233 74 107 chr1 39514170 39514316 -203150037 + MIR SINE MIR 125 262 0 277 279 311 5 chr1 39516669 39516859 -203147494 - MIR SINE MIR -13 249 2 311 262 252 56 chr1 39519239 39519453 -203144900 - MIR SINE MIR -3 259 4 2274 85 0 47 chr1 39519529 39519706 -203144647 - AluSx SINE Alu -8 304 147 2156 122 0 22 chr1 39519706 39520017 -203144336 - AluSg SINE Alu -6 304 1 2274 85 0 47 chr1 39520017 39520158 -203144195 - AluSx SINE Alu -165 147 1 2078 115 14 4 chr1 39520161 39520461 -203143892 - AluSg1 SINE Alu 0 303 1 586 278 89 6 chr1 39520598 39520811 -203143542 + MIR SINE MIR 31 262 0 375 243 39 29 chr1 39520888 39520991 -203143362 + L2 LINE L2 3157 3260 -12 2196 119 0 0 chr1 39520991 39521300 -203143053 + AluSp SINE Alu 1 309 0 1360 151 171 0 chr1 39521310 39521568 -203142785 - AluJb SINE Alu 0 302 1 529 231 168 0 chr1 39521650 39521793 -203142560 - MER45A DNA AcHobo -11 167 1 2216 127 0 0 chr1 39522624 39522924 -203141429 - AluSx SINE Alu -12 300 1 234 163 12 47 chr1 39522926 39523012 -203141341 + (TTA)n Simple_repeat Simple_repeat 3 85 0 945 191 0 0 chr1 39523014 39523166 -203141187 - FRAM SINE Alu -24 152 1 198 0 0 0 chr1 39523166 39523188 -203141165 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2322 65 14 0 chr1 39523188 39523467 -203140886 - AluSp SINE Alu -30 283 1 2392 82 3 0 chr1 39523477 39523770 -203140583 - AluSc SINE Alu -1 308 15 1004 233 9 18 chr1 39523822 39524041 -203140312 + MIR SINE MIR 36 252 -10 366 314 58 7 chr1 39524061 39524198 -203140155 - MIR SINE MIR -111 151 8 337 247 28 48 chr1 39524291 39524436 -203139917 - MIR3 SINE MIR -22 186 45 646 222 142 0 chr1 39525061 39525237 -203139116 - MIR SINE MIR -50 212 12 183 152 0 0 chr1 39525728 39525774 -203138579 + (CA)n Simple_repeat Simple_repeat 2 47 0 2585 80 0 0 chr1 39526237 39526548 -203137805 - AluY SINE Alu 0 311 1 2141 125 10 7 chr1 39526626 39526923 -203137430 + AluSx SINE Alu 1 298 -14 2208 115 3 10 chr1 39527189 39527503 -203136850 - AluSx SINE Alu 0 312 1 2317 71 3 14 chr1 39527514 39527836 -203136517 - AluY SINE Alu 0 311 1 1713 171 7 17 chr1 39527992 39528291 -203136062 - AluJo SINE Alu -16 296 1 2513 62 3 10 chr1 39528314 39528619 -203135734 - AluY SINE Alu -8 303 1 645 312 87 21 chr1 39528654 39528987 -203135366 - L1 LINE L1 -1724 4422 4068 2081 131 0 10 chr1 39528995 39529286 -203135067 - AluSg SINE Alu 0 310 23 1715 131 13 0 chr1 39529387 39529624 -203134729 - AluSx SINE Alu -72 240 1 389 121 0 0 chr1 39529624 39529690 -203134663 + L1MB3 LINE L1 6094 6159 -24 659 270 88 22 chr1 39530308 39530534 -203133819 - MIR SINE MIR -3 259 19 2143 132 7 0 chr1 39530693 39531003 -203133350 - AluSq SINE Alu -1 312 1 4351 171 68 21 chr1 39531063 39531205 -203133148 - Cheshire DNA MER1_type -1 2419 2285 1697 151 22 7 chr1 39531205 39531483 -203132870 + AluSx SINE Alu 1 282 -30 426 101 0 0 chr1 39531488 39531557 -203132796 + (TA)n Simple_repeat Simple_repeat 1 69 0 4351 171 68 21 chr1 39531557 39532171 -203132182 - Cheshire DNA MER1_type -138 2282 1598 1583 203 3 39 chr1 39532171 39532481 -203131872 - AluJo SINE Alu -13 299 1 4351 171 68 21 chr1 39532481 39532706 -203131647 - Cheshire DNA MER1_type -822 1598 1385 275 106 85 0 chr1 39532709 39532756 -203131597 + Alu SINE Alu 242 292 -10 332 191 0 22 chr1 39532776 39532865 -203131488 - Cheshire DNA MER1_type -1185 1235 1149 * 1604 211 103 80 chr1 39532841 39533463 -203130890 - Cheshire DNA MER1_type -1781 639 4 731 154 15 0 chr1 39533924 39534054 -203130299 + AluSq/x SINE Alu 2 133 -180 2322 112 0 13 chr1 39534063 39534375 -203129978 + AluSx SINE Alu 1 308 -4 818 231 6 6 chr1 39534588 39534757 -203129596 - AluJb SINE Alu -7 305 137 2509 52 0 0 chr1 39534765 39535101 -203129252 - AluY SINE Alu 0 336 1 551 252 211 68 chr1 39535103 39535376 -203128977 + L2 LINE L2 2605 2837 -476 2356 81 0 7 chr1 39535376 39535673 -203128680 - AluSp SINE Alu -18 295 1 551 252 211 68 chr1 39535673 39535996 -203128357 + L2 LINE L2 2837 3312 -1 2318 102 0 0 chr1 39536420 39536715 -203127638 - AluSg SINE Alu -15 295 1 1672 162 56 3 chr1 39536992 39537276 -203127077 - AluJo SINE Alu 0 312 14 2478 70 3 0 chr1 39537281 39537583 -203126770 - AluY SINE Alu -4 307 5 284 294 56 0 chr1 39537618 39537744 -203126609 - L1M4 LINE L1 -1006 5140 5008 540 191 53 38 chr1 39537784 39537915 -203126438 + FLAM_C SINE Alu 1 133 0 213 39 0 0 chr1 39537984 39538010 -203126343 + (T)n Simple_repeat Simple_repeat 1 26 0 6047 42 0 1 chr1 39538034 39538708 -203125645 - SVA Other Other -1 1385 713 7215 158 17 16 chr1 39538808 39539326 -203125027 - HERVFH21 LTR ERV1 -1468 5061 4545 2450 77 0 0 chr1 39539326 39539624 -203124729 + AluY SINE Alu 1 298 -13 7215 158 17 16 chr1 39539624 39541231 -203123122 - HERVFH21 LTR ERV1 -1984 4545 2868 3168 232 25 19 chr1 39541227 39542464 -203121889 - HERVFH21 LTR ERV1 -4686 900 74 * 1313 170 146 88 chr1 39542505 39542916 -203121437 - LTR21B LTR ERV1 -3 435 1 562 256 164 26 chr1 39542916 39543185 -203121168 + L2 LINE L2 2935 3240 -73 836 222 46 0 chr1 39543296 39543490 -203120863 + MER20B DNA MER1_type 219 421 -362 377 209 80 49 chr1 39543561 39543724 -203120629 + MER20B DNA MER1_type 610 777 -6 265 325 134 19 chr1 39543750 39543959 -203120394 + MIR SINE MIR 13 245 -17 2036 158 0 16 chr1 39543972 39544288 -203120065 - AluJb SINE Alu -1 311 1 280 281 35 26 chr1 39544671 39544785 -203119568 + (CAGG)n Simple_repeat Simple_repeat 1 115 0 669 286 231 18 chr1 39545692 39546247 -203118106 + L2 LINE L2 2132 2568 -745 2439 93 6 0 chr1 39546247 39546558 -203117795 + AluSp SINE Alu 1 313 0 669 286 231 18 chr1 39546558 39546916 -203117437 + L2 LINE L2 2568 3251 -62 2581 74 0 0 chr1 39546933 39547243 -203117110 + AluY SINE Alu 1 310 -1 1510 163 25 50 chr1 39547245 39547446 -203116907 + MER2 DNA MER2_type 6 198 -147 1872 138 35 17 chr1 39547446 39547735 -203116618 + AluJb SINE Alu 1 294 -18 1510 163 25 50 chr1 39547735 39547853 -203116500 + MER2 DNA MER2_type 198 317 -28 273 273 40 20 chr1 39548793 39548892 -203115461 + MIR SINE MIR 91 191 -71 24 32 0 0 chr1 39549587 39549618 -203114735 + GC_rich Low_complexity Low_complexity 1 31 0 1202 63 0 32 chr1 39553254 39553274 -203111079 - AluSx SINE Alu -159 153 134 2086 68 46 21 chr1 39553274 39553605 -203110748 - AluY SINE Alu 0 311 1 1202 63 0 32 chr1 39553605 39553742 -203110611 - AluSx SINE Alu -178 134 1 1318 268 83 27 chr1 39553746 39554273 -203110080 + L2 LINE L2 2142 2698 -616 234 327 103 6 chr1 39554267 39554367 -203109986 - L2 LINE L2 -108 3205 3116 * 2368 99 0 3 chr1 39554367 39554671 -203109682 + AluSq SINE Alu 1 303 -10 234 327 103 6 chr1 39554671 39554735 -203109618 - L2 LINE L2 -197 3116 3025 775 289 47 17 chr1 39554871 39555106 -203109247 + MIR SINE MIR 11 252 -10 277 132 0 0 chr1 39555256 39555294 -203109059 + Alu SINE Alu 1 38 -263 1041 107 6 85 chr1 39555298 39555475 -203108878 + AluSp SINE Alu 147 309 -4 432 316 70 39 chr1 39555637 39555695 -203108658 + L1MEd LINE L1 563 618 -5501 2356 95 0 0 chr1 39555695 39556013 -203108340 + AluSx SINE Alu 1 312 0 432 316 70 39 chr1 39556013 39556311 -203108042 + L1MEd LINE L1 618 930 -5189 2426 83 0 10 chr1 39556581 39556883 -203107470 + AluSq SINE Alu 1 299 -14 634 244 0 31 chr1 39556941 39557101 -203107252 + FRAM SINE Alu 2 156 -20 2285 117 0 7 chr1 39557410 39557709 -203106644 - AluSx SINE Alu -15 297 1 2265 87 0 10 chr1 39558423 39558756 -203105597 + AluSq SINE Alu 1 330 0 875 179 11 39 chr1 39559253 39559432 -203104921 - AluJb SINE Alu -2 310 137 2231 133 3 0 chr1 39559432 39559733 -203104620 - AluSx SINE Alu -8 304 3 1205 75 0 48 chr1 39559760 39559946 -203104407 + L1PA8 LINE L1 5989 6165 -7 198 0 0 0 chr1 39560125 39560147 -203104206 + (A)n Simple_repeat Simple_repeat 1 22 0 665 119 8 8 chr1 39560344 39560462 -203103891 + L1MC3 LINE L1 7597 7714 -71 971 186 192 48 chr1 39560462 39560796 -203103557 + MLT1B LTR MaLR 1 382 -8 224 254 333 30 chr1 39561138 39561303 -203103050 + MIR SINE MIR 23 237 -25 915 78 0 0 chr1 39561435 39561550 -203102803 + AluY SINE Alu 188 302 -9 1983 140 35 0 chr1 39562209 39562495 -203101858 + AluJb SINE Alu 3 298 -14 2263 78 3 56 chr1 39562497 39562845 -203101508 + AluY SINE Alu 1 331 0 1020 213 85 0 chr1 39563315 39563587 -203100766 + MER33 DNA MER1_type 30 324 0 2572 62 0 3 chr1 39564048 39564356 -203099997 - AluY SINE Alu -4 307 1 997 111 7 0 chr1 39564356 39564491 -203099862 - AluSq/x SINE Alu -176 136 1 688 286 100 24 chr1 39564492 39564767 -203099586 + HAL1 LINE L1 1914 2167 -340 2580 54 3 0 chr1 39564767 39565065 -203099288 - AluY SINE Alu -12 299 1 688 286 100 24 chr1 39565065 39565289 -203099064 + HAL1 LINE L1 2167 2451 -56 2223 125 3 0 chr1 39565343 39565646 -203098707 - AluSx SINE Alu -8 304 1 1531 147 9 4 chr1 39565815 39566047 -203098306 - AluJo SINE Alu -2 310 78 2257 101 0 14 chr1 39566831 39567127 -203097226 + AluY SINE Alu 4 295 -16 2350 92 0 0 chr1 39567468 39567763 -203096590 + AluSg SINE Alu 1 295 -15 551 252 211 68 chr1 39568187 39568510 -203095843 - L2 LINE L2 -1 3312 3037 2356 81 0 7 chr1 39568510 39568807 -203095546 + AluSp SINE Alu 1 295 -18 551 252 211 68 chr1 39568807 39569080 -203095273 - L2 LINE L2 -276 3037 2605 2471 79 0 0 chr1 39569082 39569386 -203094967 + AluY SINE Alu 1 304 -7 2184 81 21 0 chr1 39569386 39569669 -203094684 + AluY SINE Alu 1 290 -21 1221 155 0 5 chr1 39569696 39569883 -203094470 + AluJb SINE Alu 125 310 -2 386 253 50 10 chr1 39569890 39569989 -203094364 - L2 LINE L2 -11 3302 3200 1182 186 35 4 chr1 39570381 39570612 -203093741 + AluSx SINE Alu 60 297 -15 547 164 52 9 chr1 39570614 39570730 -203093623 - L1ME1 LINE L1 -53 6113 5993 275 279 196 39 chr1 39570860 39571089 -203093264 - L2 LINE L2 -16 3297 3033 2097 133 7 7 chr1 39571265 39571559 -203092794 - AluSx SINE Alu -18 294 1 610 270 156 0 chr1 39572510 39572721 -203091632 - Charlie8 DNA MER1_type -2141 276 33 2190 98 0 41 chr1 39572929 39573074 -203091279 + AluSx SINE Alu 1 150 -162 2422 71 14 0 chr1 39573074 39573370 -203090983 + AluSp SINE Alu 1 300 -13 2190 98 0 41 chr1 39573370 39573540 -203090813 + AluSx SINE Alu 150 303 -9 2260 99 3 0 chr1 39573540 39573858 -203090495 + AluSp SINE Alu 1 319 0 258 56 0 0 chr1 39574055 39574091 -203090262 + (A)n Simple_repeat Simple_repeat 1 36 0 2171 111 3 3 chr1 39574096 39574393 -203089960 + AluY SINE Alu 1 297 -14 989 175 0 12 chr1 39574480 39574651 -203089702 - AluJo SINE Alu -17 295 127 2121 120 7 16 chr1 39574838 39574974 -203089379 + AluSx SINE Alu 1 137 -175 1995 148 10 13 chr1 39574974 39575278 -203089075 + AluSq SINE Alu 1 303 -10 2121 120 7 16 chr1 39575278 39575450 -203088903 + AluSx SINE Alu 137 306 -6 1183 102 0 0 chr1 39575453 39575610 -203088743 + AluSg/x SINE Alu 135 291 -19 410 218 0 0 chr1 39575634 39575712 -203088641 - AluJ/FRAM SINE Alu -18 294 217 2295 88 7 3 chr1 39575910 39576205 -203088148 + AluSp SINE Alu 1 296 -17 403 318 186 40 chr1 39576305 39576729 -203087624 + L2 LINE L2 2824 3309 -4 2332 99 3 0 chr1 39576934 39577237 -203087116 + AluSx SINE Alu 1 304 -8 529 304 58 12 chr1 39577961 39578132 -203086221 - MIR SINE MIR -48 214 36 317 312 47 24 chr1 39579428 39579598 -203084755 + MIR SINE MIR 35 208 -54 290 276 112 45 chr1 39579741 39579875 -203084478 + MER5A DNA MER1_type 47 189 0 234 0 0 0 chr1 39580344 39580370 -203083983 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1814 133 8 0 chr1 39580372 39580635 -203083718 - AluSx SINE Alu -36 276 12 230 367 0 13 chr1 39580662 39580741 -203083612 - L2 LINE L2 -14 3258 3181 2354 90 0 7 chr1 39580785 39581095 -203083258 + AluSx SINE Alu 1 308 -4 749 148 133 41 chr1 39581097 39581293 -203083060 - Tigger1 DNA MER2_type 0 2418 2205 608 106 24 0 chr1 39581296 39581381 -203082972 + AluSp SINE Alu 1 87 -226 2370 89 0 7 chr1 39581382 39581684 -203082669 + AluSq SINE Alu 1 300 -13 1648 88 9 9 chr1 39581684 39581899 -203082454 + AluSp SINE Alu 76 291 -22 1650 118 16 141 chr1 39581904 39582287 -203082066 - Tigger1 DNA MER2_type -219 2199 1865 1407 168 7 69 chr1 39582287 39582494 -203081859 - AluJb SINE Alu -10 302 84 243 0 0 0 chr1 39582494 39582521 -203081832 + (TA)n Simple_repeat Simple_repeat 2 28 0 2119 123 7 7 chr1 39582521 39582822 -203081531 - AluSx SINE Alu -11 301 1 1407 168 7 69 chr1 39582822 39582904 -203081449 - AluJb SINE Alu -226 86 30 702 146 0 0 chr1 39583003 39583099 -203081254 - AluS SINE Alu -215 97 2 627 120 30 0 chr1 39583100 39583200 -203081153 - Tigger1 DNA MER2_type -938 1480 1378 1997 146 7 3 chr1 39583201 39583495 -203080858 + AluSx SINE Alu 1 295 -17 6897 127 26 41 chr1 39583495 39583765 -203080588 - Tigger1 DNA MER2_type -1186 1232 960 2074 128 3 16 chr1 39583765 39584077 -203080276 + AluSx SINE Alu 1 308 -4 6897 127 26 41 chr1 39584077 39584438 -203079915 - Tigger1 DNA MER2_type -1458 960 595 2241 121 0 0 chr1 39584438 39584736 -203079617 - AluSg SINE Alu -12 298 1 6897 127 26 41 chr1 39584736 39584747 -203079606 - Tigger1 DNA MER2_type -1823 595 585 2381 75 0 23 chr1 39584747 39585055 -203079298 - AluY SINE Alu -10 301 1 2019 82 0 141 chr1 39585055 39585408 -203078945 - AluSx SINE Alu -8 304 1 6897 127 26 41 chr1 39585408 39585987 -203078366 - Tigger1 DNA MER2_type -1831 587 26 184 378 27 45 chr1 39586277 39586388 -203077965 + L2 LINE L2 3077 3185 -87 400 290 65 32 chr1 39586390 39586576 -203077777 - L2 LINE L2 -5 3308 3117 330 200 0 0 chr1 39586606 39586666 -203077687 + MER58 DNA MER1_type 1 60 -155 1520 162 72 14 chr1 39586682 39586972 -203077381 - AluSg SINE Alu -2 308 2 2002 92 85 0 chr1 39586973 39587255 -203077098 - AluSx SINE Alu -6 306 1 915 164 0 0 chr1 39587256 39587396 -203076957 - FLAM_C SINE Alu -3 140 1 608 176 146 46 chr1 39587445 39587706 -203076647 + AluSp SINE Alu 2 288 -25 1467 143 9 0 chr1 39587872 39588089 -203076264 + AluSg/x SINE Alu 82 300 -10 1689 102 102 33 chr1 39588089 39588313 -203076040 + MER46B DNA MER2_type 34 161 -2570 1795 104 123 11 chr1 39588313 39588581 -203075772 - AluSg SINE Alu -11 299 2 1689 102 102 33 chr1 39588581 39588661 -203075692 + MER46B DNA MER2_type 161 234 -2 341 47 0 0 chr1 39588979 39589022 -203075331 - L1PA16 LINE L1 -9 6157 6115 1343 169 37 7 chr1 39590955 39591228 -203073125 + AluSq SINE Alu 21 301 -12 1782 150 0 24 chr1 39591238 39591525 -203072828 + AluSq SINE Alu 14 293 -20 961 184 0 12 chr1 39591620 39591788 -203072565 + AluJb SINE Alu 137 302 -10 422 128 0 3 chr1 39591792 39592018 -203072335 + AluSq SINE Alu 1 301 -10 2342 114 0 6 chr1 39592023 39592338 -203072015 + AluSq SINE Alu 1 313 0 1296 189 59 64 chr1 39592341 39592399 -203071954 - L1M4 LINE L1 -883 5263 5206 2206 119 0 19 chr1 39592399 39592717 -203071636 - AluSx SINE Alu 0 312 1 1296 189 59 64 chr1 39592717 39592750 -203071603 - L1M4 LINE L1 -940 5206 5174 2493 74 3 0 chr1 39592750 39593048 -203071305 - AluY SINE Alu -12 299 1 1296 189 59 64 chr1 39593048 39593266 -203071087 - L1M4 LINE L1 -972 5174 4953 1842 171 11 0 chr1 39593266 39593553 -203070800 - AluJo SINE Alu -22 290 1 1296 189 59 64 chr1 39593553 39593616 -203070737 - L1M4 LINE L1 -1193 4953 4891 439 131 0 60 chr1 39593616 39593688 -203070665 + AluSp/q SINE Alu 235 310 -3 2533 74 0 0 chr1 39593688 39593985 -203070368 - AluY SINE Alu -12 299 3 2282 92 10 0 chr1 39593987 39594154 -203070199 - AluY SINE Alu -15 296 123 189 0 0 0 chr1 39594154 39594175 -203070178 + (TG)n Simple_repeat Simple_repeat 2 22 0 2282 92 10 0 chr1 39594175 39594300 -203070053 - AluY SINE Alu -188 123 1 1177 218 3 11 chr1 39594528 39594842 -203069511 + AluY SINE Alu 1 312 0 1698 181 24 11 chr1 39595063 39595350 -203069003 - AluJo SINE Alu -21 291 1 1030 144 60 74 chr1 39595350 39595453 -203068900 - L1M4 LINE L1 -681 5493 5390 2717 42 0 3 chr1 39595453 39595760 -203068593 - AluY SINE Alu -5 306 1 1030 144 60 74 chr1 39595760 39595947 -203068406 - L1M4 LINE L1 -784 5390 5223 1929 93 31 4 chr1 39595947 39596204 -203068149 - AluSg SINE Alu -11 299 36 1030 144 60 74 chr1 39596204 39596321 -203068032 - L1M4 LINE L1 -951 5223 5106 1968 120 0 4 chr1 39596505 39596772 -203067581 + AluSx SINE Alu 28 293 -19 904 106 25 75 chr1 39646805 39646817 -203017536 + FRAM SINE Alu 23 34 -278 4889 188 108 112 chr1 39646817 39648579 -203015774 - MER52A LTR ERV1 0 1755 1 904 106 25 75 chr1 39648579 39648727 -203015626 + FRAM SINE Alu 34 175 -1 749 168 23 0 chr1 39648984 39649115 -203015238 - U4 snRNA snRNA -1 144 11 180 0 0 0 chr1 39649167 39649187 -203015166 + (CA)n Simple_repeat Simple_repeat 2 21 0 2225 126 7 0 chr1 39649187 39649480 -203014873 - AluSx SINE Alu -17 295 1 402 57 0 0 chr1 39649489 39649542 -203014811 + (TA)n Simple_repeat Simple_repeat 2 54 0 349 295 23 0 chr1 39649553 39649726 -203014627 + (TA)n Simple_repeat Simple_repeat 2 178 0 25 0 0 0 chr1 39649733 39649758 -203014595 + AT_rich Low_complexity Low_complexity 1 25 0 244 310 21 0 chr1 39649809 39649951 -203014402 + (TA)n Simple_repeat Simple_repeat 1 145 0 255 291 26 7 chr1 39649974 39650017 -203014336 + (TA)n Simple_repeat Simple_repeat 1 42 -112 2303 54 0 20 chr1 39650017 39650353 -203014000 - AluY SINE Alu 0 311 1 255 291 26 7 chr1 39650353 39650460 -203013893 + (TA)n Simple_repeat Simple_repeat 42 154 0 350 174 161 76 chr1 39650460 39650684 -203013669 + Charlie1 DNA MER1_type 2519 2761 0 2495 71 3 3 chr1 39650704 39651012 -203013341 - AluY SINE Alu -3 308 1 2245 123 0 10 chr1 39651645 39651955 -203012398 - AluJb SINE Alu -5 307 1 984 209 0 0 chr1 39652054 39652231 -203012122 - AluJo/FRAM SINE Alu -2 310 134 2056 112 3 27 chr1 39652231 39652525 -203011828 - AluSp SINE Alu -26 287 1 1087 67 4 20 chr1 39652745 39653008 -203011345 + (TTCC)n Simple_repeat Simple_repeat 1 258 0 2074 112 0 0 chr1 39653022 39653290 -203011063 - AluSg1 SINE Alu -15 294 27 278 283 207 28 chr1 39653290 39653435 -203010918 + MER5A DNA MER1_type 1 171 -18 1106 129 11 51 chr1 39653616 39653794 -203010559 - AluJb SINE Alu -9 303 133 1672 155 48 24 chr1 39654077 39654367 -203009986 + AluJb SINE Alu 1 297 -15 2206 103 21 0 chr1 39654369 39654660 -203009693 + AluSg SINE Alu 2 298 -12 234 167 0 0 chr1 39654737 39654779 -203009574 + LTR67 LTR ERVL 18 59 -498 415 258 25 8 chr1 39655067 39655187 -203009166 + LTR67 LTR ERVL 436 557 0 2252 128 0 0 chr1 39655236 39655548 -203008805 - AluSx SINE Alu 0 312 1 2291 106 3 0 chr1 39655563 39655855 -203008498 - AluSg SINE Alu -17 293 1 343 337 44 33 chr1 39655906 39656087 -203008266 - L3 LINE CR1 -3 1574 1392 24 0 0 0 chr1 39656402 39656426 -203007927 + AT_rich Low_complexity Low_complexity 1 24 0 2395 122 0 0 chr1 39656433 39656745 -203007608 - AluSx SINE Alu 0 312 1 2613 59 0 0 chr1 39657234 39657539 -203006814 + AluY SINE Alu 1 305 -6 999 186 22 6 chr1 39657620 39657803 -203006550 + AluJo SINE Alu 121 306 -6 1724 148 62 22 chr1 39658072 39658526 -203005827 - MER51A LTR ERV1 -16 618 122 2333 101 0 19 chr1 39658934 39659242 -203005111 - AluSx SINE Alu -10 302 1 2242 112 0 7 chr1 39659941 39660236 -203004117 + AluSx SINE Alu 1 293 -19 1682 130 134 0 chr1 39660245 39660507 -203003846 + AluJo SINE Alu 1 297 -15 1481 155 29 7 chr1 39660554 39660935 -203003418 + LOR1a LTR ERV1 40 497 0 195 356 48 0 chr1 39661309 39661413 -203002940 - MIR SINE MIR -63 145 37 610 163 0 0 chr1 39661551 39661643 -203002710 - AluJb SINE Alu -12 300 209 2536 63 3 0 chr1 39661717 39662019 -203002334 - AluY SINE Alu -8 303 1 2425 93 3 3 chr1 39662530 39662840 -203001513 - AluSp SINE Alu -3 310 1 2280 105 0 7 chr1 39663353 39663648 -203000705 - AluY SINE Alu -18 293 1 2087 127 3 36 chr1 39665023 39665331 -202999022 + AluSx SINE Alu 1 298 -14 414 344 156 19 chr1 39665535 39665895 -202998458 + L2 LINE L2 2829 3237 -35 960 199 6 0 chr1 39666190 39666361 -202997992 - FRAM SINE Alu 0 176 5 2220 107 0 7 chr1 39666366 39666664 -202997689 - AluSg SINE Alu -14 296 1 197 280 0 0 chr1 39668020 39668070 -202996283 + L2 LINE L2 3223 3272 0 218 32 32 0 chr1 39669412 39669443 -202994910 + (TAA)n Simple_repeat Simple_repeat 1 32 0 377 250 226 18 chr1 39669443 39669607 -202994746 - MIR SINE MIR -14 248 51 2416 104 0 0 chr1 39669981 39670289 -202994064 + AluY SINE Alu 1 308 -3 1755 163 21 3 chr1 39670505 39670793 -202993560 - AluJb SINE Alu -19 293 1 472 243 105 7 chr1 39670801 39670953 -202993400 - MIR SINE MIR -68 194 28 426 261 72 14 chr1 39671019 39671157 -202993196 - MIR SINE MIR -114 148 3 300 256 129 12 chr1 39671319 39671412 -202992941 + MIR3 SINE MIR 98 203 -5 2280 125 0 0 chr1 39671443 39671754 -202992599 + AluSx SINE Alu 1 311 -1 488 263 75 66 chr1 39671822 39672005 -202992348 + MIR SINE MIR 33 220 -42 2250 116 3 3 chr1 39672005 39672307 -202992046 + AluSg SINE Alu 1 302 -8 488 263 75 66 chr1 39672307 39672351 -202992002 + MIR SINE MIR 220 262 0 207 343 32 50 chr1 39672918 39673195 -202991158 + L2 LINE L2 2134 2405 -909 182 347 21 0 chr1 39673195 39673290 -202991063 + L2 LINE L2 2561 2657 -657 2281 119 0 0 chr1 39673297 39673599 -202990754 - AluSx SINE Alu -10 302 1 2414 79 0 3 chr1 39673601 39673893 -202990460 - AluSg SINE Alu -19 291 1 1782 148 0 73 chr1 39673893 39674210 -202990143 - AluSc SINE Alu -15 294 1 26 98 0 0 chr1 39674334 39674416 -202989937 + AT_rich Low_complexity Low_complexity 1 82 0 2443 96 0 6 chr1 39674499 39674813 -202989540 + AluSx SINE Alu 1 312 0 340 240 171 8 chr1 39675098 39675227 -202989126 - MIR SINE MIR -57 205 56 2252 99 28 0 chr1 39675256 39675540 -202988813 + AluSx SINE Alu 1 292 -20 721 184 0 22 chr1 39675540 39675667 -202988686 - FLAM_A SINE Alu -176 126 1 2098 148 3 3 chr1 39675697 39676000 -202988353 + AluJo SINE Alu 1 303 -9 995 147 163 0 chr1 39676129 39676319 -202988034 - AluJb SINE Alu -5 307 87 309 153 119 0 chr1 39676347 39676406 -202987947 - AluSq SINE Alu -1 301 236 2325 70 42 0 chr1 39676406 39676690 -202987663 - AluSg SINE Alu -14 296 1 1521 177 8 0 chr1 39676691 39676934 -202987419 - AluSq SINE Alu -68 245 1 734 186 0 0 chr1 39677085 39677214 -202987139 + FLAM_C SINE Alu 5 133 0 2364 98 0 0 chr1 39677243 39677548 -202986805 - AluSx SINE Alu -7 305 1 649 209 0 0 chr1 39679303 39679432 -202984921 + MER94 DNA DNA 3 131 -3 449 275 30 33 chr1 39679470 39679674 -202984679 + MIR3 SINE MIR 2 203 -59 2547 76 3 0 chr1 39679887 39680191 -202984162 + AluSg SINE Alu 1 305 -5 353 284 57 14 chr1 39680524 39680665 -202983688 - MIR SINE MIR -34 228 82 370 242 47 47 chr1 39680901 39681029 -202983324 + MIR SINE MIR 22 149 -113 2409 68 3 3 chr1 39681093 39681385 -202982968 - AluSc SINE Alu -12 297 6 2313 57 57 0 chr1 39682032 39682313 -202982040 - AluY SINE Alu -14 297 1 415 339 80 30 chr1 39682394 39682733 -202981620 + L1MC4a LINE L1 5532 5887 -1921 285 343 93 11 chr1 39683572 39683852 -202980501 + L2 LINE L2 2383 2685 -629 1826 173 0 27 chr1 39684122 39684422 -202979931 - AluJo SINE Alu -20 292 1 2134 130 3 0 chr1 39684819 39685112 -202979241 - AluJb SINE Alu -18 294 1 518 264 169 5 chr1 39685381 39685582 -202978771 - MIR SINE MIR 0 262 29 2287 98 17 0 chr1 39685590 39685877 -202978476 - AluSp SINE Alu -21 292 1 2450 100 0 0 chr1 39686653 39686963 -202977390 - AluSx SINE Alu -2 310 1 1017 233 71 0 chr1 39687044 39687284 -202977069 - MIR SINE MIR 0 262 6 189 0 0 0 chr1 39687330 39687351 -202977002 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 24 0 0 0 chr1 39688522 39688546 -202975807 + GC_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chr1 39688616 39688646 -202975707 + GC_rich Low_complexity Low_complexity 1 30 0 374 290 9 0 chr1 39689792 39689899 -202974454 - MIR SINE MIR -123 139 32 266 278 155 10 chr1 39689894 39689991 -202974362 + MIR SINE MIR 39 149 -113 * 258 56 0 0 chr1 39690430 39690466 -202973887 + (CA)n Simple_repeat Simple_repeat 2 37 0 453 256 149 6 chr1 39690817 39690985 -202973368 + MIR SINE MIR 1 192 -70 2280 120 0 0 chr1 39690996 39691295 -202973058 + AluSq SINE Alu 1 299 -14 401 240 70 0 chr1 39691303 39691403 -202972950 - L2 LINE L2 -5 3308 3202 1950 154 7 13 chr1 39691454 39691759 -202972594 - AluJo SINE Alu -9 303 1 472 194 0 30 chr1 39691791 39691896 -202972457 + MIR3 SINE MIR 58 160 -48 225 0 0 0 chr1 39692452 39692477 -202971876 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 412 313 181 20 chr1 39692874 39693043 -202971310 + L2 LINE L2 2837 2977 -336 1493 138 51 71 chr1 39693043 39693339 -202971014 + AluJo SINE Alu 2 291 -21 412 313 181 20 chr1 39693339 39693578 -202970775 + L2 LINE L2 2977 3311 -2 222 296 75 38 chr1 39694317 39694476 -202969877 - MER5A DNA MER1_type -12 177 13 2197 134 7 0 chr1 39694642 39694947 -202969406 - AluSx SINE Alu -5 307 1 714 149 8 30 chr1 39695034 39695168 -202969185 + FLAM_C SINE Alu 1 131 -2 1927 89 0 27 chr1 39695269 39695527 -202968826 - AluSx SINE Alu -6 306 56 435 188 248 15 chr1 39695822 39695955 -202968398 + MER5B DNA MER1_type 7 170 -8 220 279 101 0 chr1 39696956 39697035 -202967318 - MIR SINE MIR -59 203 117 576 196 0 60 chr1 39697042 39697175 -202967178 + FLAM_A SINE Alu 1 125 -8 2016 80 87 18 chr1 39697185 39697461 -202966892 + AluY SINE Alu 1 295 -16 2356 100 0 3 chr1 39697484 39697783 -202966570 + AluSq SINE Alu 1 298 -15 395 280 87 106 chr1 39697788 39698063 -202966290 + L1M4 LINE L1 4056 4325 -1821 244 250 95 0 chr1 39698064 39698148 -202966205 - MIR SINE MIR -121 141 50 2250 110 10 0 chr1 39698157 39698456 -202965897 + AluSx SINE Alu 1 302 -10 374 222 95 60 chr1 39698468 39698600 -202965753 - MER5B DNA MER1_type -3 186 44 2489 67 6 16 chr1 39698600 39698914 -202965439 + AluY SINE Alu 1 311 0 374 222 95 60 chr1 39698914 39698938 -202965415 - MER5B DNA MER1_type -145 44 22 204 271 0 0 chr1 39698942 39698990 -202965363 + MER5A DNA MER1_type 50 97 -92 229 303 0 15 chr1 39699049 39699115 -202965238 + MER5A DNA MER1_type 125 189 0 876 141 54 27 chr1 39699123 39699307 -202965046 - MER5A DNA MER1_type 0 189 1 2149 112 27 0 chr1 39699352 39699648 -202964705 + AluSx SINE Alu 1 304 -8 205 325 88 18 chr1 39699692 39699806 -202964547 + MIR SINE MIR 19 140 -122 1901 108 104 0 chr1 39700605 39700873 -202963480 + AluSg1 SINE Alu 1 296 -13 336 195 37 0 chr1 39701020 39701102 -202963251 - L1MC/D LINE L1 -2000 5808 5724 285 336 16 8 chr1 39701140 39701268 -202963085 - L1MC/D LINE L1 -2080 5728 5600 2384 90 0 3 chr1 39701638 39701937 -202962416 - AluSq SINE Alu -15 298 1 2395 106 0 0 chr1 39702150 39702451 -202961902 - AluSx SINE Alu -11 301 1 197 319 117 0 chr1 39702509 39702603 -202961750 - MIR SINE MIR -77 185 81 452 308 28 14 chr1 39704488 39704631 -202959722 - MIR SINE MIR -92 170 26 835 139 42 54 chr1 39705223 39705389 -202958964 - AluJo/FRAM SINE Alu -1 311 148 580 100 0 0 chr1 39705392 39705472 -202958881 - AluJ/FLAM SINE Alu -230 82 3 692 167 0 0 chr1 39705547 39705655 -202958698 - MER2 DNA MER2_type -4 341 234 2360 90 3 7 chr1 39705656 39705956 -202958397 - AluSx SINE Alu -7 305 7 512 89 0 0 chr1 39705963 39706042 -202958311 - AluJ/FRAM SINE Alu -2 310 232 2540 67 0 16 chr1 39706089 39706403 -202957950 - AluY SINE Alu -2 309 1 1198 126 49 54 chr1 39706404 39706497 -202957856 - MER2 DNA MER2_type -117 228 136 2171 114 7 7 chr1 39706497 39706795 -202957558 + AluSx SINE Alu 1 298 -14 1198 126 49 54 chr1 39706795 39706924 -202957429 - MER2 DNA MER2_type -209 136 7 242 284 51 81 chr1 39707848 39708144 -202956209 - L2 LINE L2 -31 3241 2955 1712 211 76 45 chr1 39708727 39709128 -202955225 - L1MC4 LINE L1 -159 7883 7461 1604 163 91 4 chr1 39709128 39709392 -202954961 + AluJb SINE Alu 5 291 -21 1712 211 76 45 chr1 39709392 39709503 -202954850 - L1MC4 LINE L1 -581 7461 7355 245 204 34 23 chr1 39709514 39709602 -202954751 - L1ME2 LINE L1 0 6164 6076 2305 112 0 40 chr1 39710528 39710851 -202953502 + AluSx SINE Alu 1 310 -2 1251 164 0 18 chr1 39711723 39711942 -202952411 - AluJb SINE Alu 0 312 98 753 168 0 0 chr1 39711969 39712088 -202952265 - AluJ SINE Alu -183 119 1 482 234 122 47 chr1 39712137 39712274 -202952079 - MIR SINE MIR -4 258 98 2450 70 7 3 chr1 39712274 39712573 -202951780 - AluSq SINE Alu -13 300 1 482 234 122 47 chr1 39712573 39712649 -202951704 - MIR SINE MIR -164 98 29 2569 52 0 23 chr1 39712746 39713051 -202951302 - AluY SINE Alu -13 298 1 903 186 233 13 chr1 39713058 39713294 -202951059 - AluJo SINE Alu -12 290 3 2906 169 50 3 chr1 39713326 39713905 -202950448 - L1MC3 LINE L1 -144 7641 7036 249 33 0 0 chr1 39713910 39713940 -202950413 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2172 134 7 0 chr1 39714149 39714454 -202949899 - AluSx SINE Alu -1 311 5 1905 151 3 49 chr1 39714536 39714677 -202949676 + AluJo SINE Alu 3 149 -163 2558 72 3 0 chr1 39714677 39714983 -202949370 + AluSp SINE Alu 1 307 -6 1905 151 3 49 chr1 39714983 39715166 -202949187 + AluJo SINE Alu 149 312 0 195 309 15 15 chr1 39715208 39715276 -202949077 + MIR3 SINE MIR 140 207 -1 1848 140 65 7 chr1 39715880 39716173 -202948180 + AluJo SINE Alu 1 310 -2 24 32 0 0 chr1 39716203 39716234 -202948119 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 39718085 39718106 -202946247 + AT_rich Low_complexity Low_complexity 1 21 0 2444 43 7 16 chr1 39718111 39718414 -202945939 + AluY SINE Alu 4 303 -8 2495 64 7 0 chr1 39718587 39718882 -202945471 + AluSp SINE Alu 1 297 -16 437 245 54 126 chr1 39719336 39719597 -202944756 - MIR SINE MIR -3 259 18 2275 105 0 0 chr1 39719598 39719905 -202944448 - AluSx SINE Alu 0 307 1 195 42 0 0 chr1 39721098 39721122 -202943231 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 529 236 133 7 chr1 39721365 39721540 -202942813 + MIR SINE MIR 21 214 -48 2074 132 40 0 chr1 39721709 39722005 -202942348 + AluSx SINE Alu 1 308 -4 253 0 0 0 chr1 39722344 39722372 -202941981 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 2248 92 7 0 chr1 39722372 39722654 -202941699 - AluSx SINE Alu -1 311 1 2327 102 0 0 chr1 39722659 39722964 -202941389 - AluSx SINE Alu -7 305 1 242 268 0 0 chr1 39723400 39723456 -202940897 + MIR SINE MIR 91 146 -62 594 253 170 16 chr1 39724190 39724384 -202939969 + MIR SINE MIR 22 245 -17 185 222 37 56 chr1 39724492 39724546 -202939807 + L2 LINE L2 3261 3313 0 451 309 77 10 chr1 39724694 39724901 -202939452 - MIR SINE MIR -41 221 1 186 314 12 47 chr1 39725063 39725149 -202939204 - L2 LINE L2 -9 3304 3222 306 301 49 35 chr1 39725427 39725630 -202938723 - L2 LINE L2 -452 2862 2657 2424 97 3 0 chr1 39726196 39726507 -202937846 + AluSx SINE Alu 1 312 0 349 257 169 6 chr1 39727398 39727573 -202936780 + MIR SINE MIR 3 207 -55 2605 62 3 0 chr1 39727812 39728121 -202936232 - AluSq SINE Alu -3 310 1 2338 67 3 20 chr1 39728489 39728789 -202935564 - AluSq SINE Alu -18 295 1 843 195 0 29 chr1 39728899 39729073 -202935280 - FRAM SINE Alu -10 166 1 1900 118 46 46 chr1 39729519 39729825 -202934528 + AluSx SINE Alu 1 306 -6 268 180 0 0 chr1 39729887 39729937 -202934416 + Charlie8 DNA MER1_type 1360 1409 -1008 533 224 42 116 chr1 39729987 39730228 -202934125 + MIR SINE MIR 2 224 -38 1631 184 19 32 chr1 39730231 39730525 -202933828 + AluJo SINE Alu 1 292 -20 191 35 0 35 chr1 39730525 39730554 -202933799 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 1631 184 19 32 chr1 39730554 39730568 -202933785 + AluJo SINE Alu 292 305 -7 209 299 175 40 chr1 39730773 39731024 -202933329 + L2 LINE L2 2010 2294 -1020 1279 198 58 66 chr1 39731115 39731479 -202932874 + MLT1A2 LTR MaLR 1 361 -13 440 317 48 0 chr1 39731483 39731628 -202932725 + L2 LINE L2 2794 2945 -369 344 364 6 6 chr1 39731991 39732153 -202932200 + L2 LINE L2 2888 3049 -223 342 290 13 65 chr1 39733146 39733301 -202931052 - MIR SINE MIR -96 166 20 330 305 104 68 chr1 39733613 39733636 -202930717 + MIR SINE MIR 5 26 -236 2362 101 0 0 chr1 39733636 39733933 -202930420 + AluY SINE Alu 1 297 -14 330 305 104 68 chr1 39733933 39734158 -202930195 + MIR SINE MIR 26 262 0 * 548 235 71 44 chr1 39734151 39734334 -202930019 - MIR SINE MIR -64 198 11 310 185 0 0 chr1 39734313 39734367 -202929986 - L2 LINE L2 0 3272 3219 * 259 251 62 73 chr1 39734819 39734877 -202929476 + L1M4 LINE L1 3975 4032 -2114 2345 92 0 0 chr1 39734877 39735170 -202929183 - AluSx SINE Alu -19 293 1 259 251 62 73 chr1 39735170 39735290 -202929063 + L1M4 LINE L1 4032 4151 -1995 1971 166 3 25 chr1 39735753 39736072 -202928281 + AluJb SINE Alu 1 312 0 2486 55 14 0 chr1 39736573 39736866 -202927487 - AluY SINE Alu -14 297 1 326 250 29 19 chr1 39736986 39737090 -202927263 - MIR SINE MIR -110 152 48 202 200 360 0 chr1 39737590 39737665 -202926688 - L2 LINE L2 -2 3270 3169 249 326 11 11 chr1 39738217 39738312 -202926041 + MIR3 SINE MIR 4 98 -110 206 314 81 32 chr1 39738993 39739117 -202925236 + L2 LINE L2 3184 3313 0 24 0 0 0 chr1 39739361 39739385 -202924968 + AT_rich Low_complexity Low_complexity 1 24 0 721 111 0 0 chr1 39739395 39739503 -202924850 - AluJo SINE Alu -175 137 30 2516 69 7 13 chr1 39739521 39739827 -202924526 - AluSx SINE Alu -8 304 1 241 274 131 51 chr1 39739831 39740006 -202924347 - MIR SINE MIR -1 261 73 29 0 0 0 chr1 39740848 39740877 -202923476 + GC_rich Low_complexity Low_complexity 1 29 0 552 261 147 18 chr1 39741323 39741541 -202922812 + MIR SINE MIR 7 252 -10 3668 161 42 6 chr1 39741570 39742255 -202922098 + MER67C LTR ERV1 1 710 0 379 47 0 47 chr1 39742432 39742496 -202921857 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 215 288 0 17 chr1 39745006 39745072 -202919281 - MIR SINE MIR -123 85 21 1785 155 41 17 chr1 39745157 39745333 -202919020 - AluJb SINE Alu -15 297 110 252 86 0 0 chr1 39745333 39745368 -202918985 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1785 155 41 17 chr1 39745368 39745481 -202918872 - AluJb SINE Alu -202 110 1 856 242 35 13 chr1 39746480 39746710 -202917643 + MIR SINE MIR 2 235 -27 632 216 8 84 chr1 39746723 39746776 -202917577 - MIR SINE MIR -1 261 206 309 109 0 0 chr1 39746776 39746822 -202917531 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 2180 82 0 0 chr1 39746827 39747095 -202917258 - AluSx SINE Alu -34 278 11 632 216 8 84 chr1 39747095 39747263 -202917090 - MIR SINE MIR -60 202 57 636 262 87 52 chr1 39747477 39747660 -202916693 - MIR SINE MIR 0 262 66 2436 91 0 3 chr1 39747660 39747967 -202916386 - AluSx SINE Alu -6 306 1 636 262 87 52 chr1 39747967 39748035 -202916318 - MIR SINE MIR -196 66 2 1010 248 120 22 chr1 39749475 39749834 -202914519 + L2 LINE L2 2918 3311 -2 357 294 0 29 chr1 39749845 39750015 -202914338 + (TCTCTG)n Simple_repeat Simple_repeat 4 168 0 846 289 14 5 chr1 39750784 39750992 -202913361 + MIR SINE MIR 45 254 -8 578 50 0 0 chr1 39751011 39751091 -202913262 - Alu SINE Alu -5 307 228 1140 111 0 0 chr1 39751091 39751235 -202913118 - AluSq/x SINE Alu -169 144 1 455 257 173 6 chr1 39751411 39751590 -202912763 + MIR SINE MIR 5 213 -49 2367 97 0 7 chr1 39751618 39751927 -202912426 - AluSq SINE Alu -6 307 1 831 234 78 0 chr1 39752477 39752669 -202911684 + MER63A DNA MER1_type 2 208 -2 917 274 22 4 chr1 39752833 39753063 -202911290 + MIR SINE MIR 2 235 -27 226 351 132 17 chr1 39753076 39753250 -202911103 + L2 LINE L2 2764 2957 -357 1947 153 13 29 chr1 39753276 39753589 -202910764 - AluJb SINE Alu -3 309 2 379 261 75 43 chr1 39753715 39753877 -202910476 + L2 LINE L2 3120 3290 -23 2250 96 3 13 chr1 39753877 39754180 -202910173 - AluSg SINE Alu -10 300 1 379 261 75 43 chr1 39754180 39754205 -202910148 + L2 LINE L2 3290 3313 0 304 271 0 0 chr1 39754259 39754343 -202910010 - MIR SINE MIR -63 145 72 2385 78 7 0 chr1 39754383 39754678 -202909675 - AluY SINE Alu -14 297 1 196 303 79 40 chr1 39754684 39754760 -202909593 - L3 LINE CR1 -10 1567 1489 456 193 85 108 chr1 39754770 39754867 -202909486 + MER58C DNA MER1_type 44 142 -2278 2415 100 0 0 chr1 39754867 39755177 -202909176 + AluSx SINE Alu 1 310 -2 1675 147 28 39 chr1 39755186 39755507 -202908846 + AluJb SINE Alu 1 318 0 456 193 85 108 chr1 39755507 39755574 -202908779 + MER58C DNA MER1_type 150 215 0 460 331 106 13 chr1 39755578 39755880 -202908473 - L3 LINE CR1 -83 1494 1165 556 314 87 0 chr1 39756153 39756360 -202907993 + MIR SINE MIR 15 239 -23 927 242 31 74 chr1 39756448 39756799 -202907554 - LTR16C LTR ERVL 0 491 156 554 264 107 6 chr1 39757457 39757616 -202906737 - MER91A DNA MER1_type -7 189 15 842 281 15 23 chr1 39758026 39758286 -202906067 + MIR SINE MIR 2 259 -3 1410 251 76 16 chr1 39760377 39761079 -202903274 + L2 LINE L2 2574 3311 -2 2336 125 0 0 chr1 39761254 39761566 -202902787 - AluSx SINE Alu 0 312 1 2444 102 0 6 chr1 39761587 39761901 -202902452 - AluSx SINE Alu 0 312 1 204 273 55 0 chr1 39761967 39762022 -202902331 - L2 LINE L2 -56 3216 3159 470 274 121 58 chr1 39762119 39762532 -202901821 + L2 LINE L2 2823 3261 -11 461 305 60 0 chr1 39762533 39762700 -202901653 + MIR SINE MIR 80 256 -6 204 260 78 13 chr1 39762758 39762835 -202901518 + L3b LINE CR1 1294 1375 -208 675 280 115 0 chr1 39762879 39763097 -202901256 + MIR SINE MIR 16 258 -4 395 252 28 21 chr1 39763621 39763764 -202900589 + L2 LINE L2 2887 3030 -242 2361 106 3 0 chr1 39763773 39764085 -202900268 - AluSq SINE Alu 0 313 1 293 229 22 2 chr1 39764208 39764304 -202900049 - MIR SINE MIR -73 135 53 2395 94 7 0 chr1 39765004 39765302 -202899051 + AluSq SINE Alu 1 300 -13 6171 130 34 15 chr1 39765388 39766339 -202898014 - LTR5 LTR ERVK 0 969 1 3174 92 14 0 chr1 39766339 39766783 -202897570 - HERVK LTR ERVK 0 7243 6794 * 3359 147 19 31 chr1 39766778 39767532 -202896821 - HERVK LTR ERVK -1698 5719 4995 532 118 24 0 chr1 39767534 39767619 -202896734 + AluSp/q SINE Alu 217 303 -10 810 118 8 8 chr1 39767746 39767873 -202896480 + MLT1D LTR MaLR 32 158 -347 21 0 0 0 chr1 39767916 39767937 -202896416 + AT_rich Low_complexity Low_complexity 1 21 0 1266 101 0 0 chr1 39767937 39768096 -202896257 - AluSp SINE Alu -15 298 140 2244 124 0 0 chr1 39768102 39768409 -202895944 - AluY SINE Alu -4 307 1 420 337 6 12 chr1 39768477 39768643 -202895710 + L2 LINE L2 2916 3080 -192 243 353 0 16 chr1 39769900 39770022 -202894331 + (TTCA)n Simple_repeat Simple_repeat 1 120 0 * 254 353 0 0 chr1 39769959 39770027 -202894326 + (CCCA)n Simple_repeat Simple_repeat 2 69 0 623 222 10 3 chr1 39770027 39770339 -202894014 + (TCCA)n Simple_repeat Simple_repeat 1 314 0 210 317 24 0 chr1 39770340 39770422 -202893931 - L2 LINE L2 -2 3311 3228 302 351 88 45 chr1 39770483 39770719 -202893634 + L2 LINE L2 371 596 -2718 2307 104 0 0 chr1 39770719 39771017 -202893336 - AluSq SINE Alu -13 300 3 302 351 88 45 chr1 39771017 39771396 -202892957 + L2 LINE L2 596 1012 -2302 1668 174 13 27 chr1 39771512 39771810 -202892543 - AluJb SINE Alu -18 294 1 891 187 46 120 chr1 39771937 39771977 -202892376 - L1MC4 LINE L1 -2 8040 7999 2516 73 0 3 chr1 39771977 39772278 -202892075 + AluY SINE Alu 1 300 -11 891 187 46 120 chr1 39772278 39772586 -202891767 - L1MC4 LINE L1 -43 7999 7719 943 197 94 10 chr1 39772726 39772929 -202891424 + MER58A DNA MER1_type 5 224 0 855 102 57 25 chr1 39772937 39773094 -202891259 + MER3 DNA MER1_type 1 162 -47 23 0 0 0 chr1 39773094 39773117 -202891236 + AT_rich Low_complexity Low_complexity 1 23 0 * 858 154 0 22 chr1 39773100 39773236 -202891117 - FLAM_C SINE Alu -10 133 1 31 44 0 0 chr1 39773239 39773284 -202891069 + AT_rich Low_complexity Low_complexity 1 45 0 * 206 93 47 47 chr1 39773251 39773294 -202891059 + (TTAA)n Simple_repeat Simple_repeat 2 44 0 1990 134 8 0 chr1 39773294 39773585 -202890768 - AluJb SINE Alu -22 290 1 240 167 14 83 chr1 39773585 39773649 -202890704 + MER3 DNA MER1_type 215 209 0 233 220 20 0 chr1 39773607 39773657 -202890696 - MER3 DNA MER1_type -119 90 40 * 1088 277 66 78 chr1 39773788 39775126 -202889227 - L1ME3A LINE L1 -230 6009 4657 545 111 12 0 chr1 39775126 39775207 -202889146 - AluJ/FRAM SINE Alu -12 300 219 752 161 0 0 chr1 39775207 39775325 -202889028 - AluJo/FLAM SINE Alu -183 119 2 1088 277 66 78 chr1 39775325 39775564 -202888789 - L1ME3A LINE L1 -1581 4658 4418 2361 106 3 0 chr1 39775564 39775876 -202888477 - AluSq SINE Alu 0 313 1 1088 277 66 78 chr1 39775876 39776101 -202888252 - L1ME3A LINE L1 -1821 4418 4192 1887 146 3 10 chr1 39776101 39776396 -202887957 + AluJo SINE Alu 1 293 -19 1088 277 66 78 chr1 39776396 39776494 -202887859 - L1ME3A LINE L1 -2047 4192 4094 1050 133 5 0 chr1 39776494 39776690 -202887663 + L1MA7 LINE L1 6095 6291 0 1088 277 66 78 chr1 39776690 39777024 -202887329 - L1ME3A LINE L1 -2145 4094 3658 642 288 113 51 chr1 39777149 39777460 -202886893 - L1ME3A LINE L1 -2876 3339 3049 2310 95 7 0 chr1 39777460 39777765 -202886588 - AluSp SINE Alu -6 307 1 642 288 113 51 chr1 39777765 39778012 -202886341 - L1ME3A LINE L1 -3166 3049 2819 1510 138 22 116 chr1 39778012 39778100 -202886253 + AluJo SINE Alu 24 119 -193 2147 110 30 0 chr1 39778100 39778400 -202885953 + AluSg SINE Alu 1 309 -1 1510 138 22 116 chr1 39778400 39778629 -202885724 + AluJo SINE Alu 119 311 -1 642 288 113 51 chr1 39778629 39778969 -202885384 - L1ME3A LINE L1 -3396 2819 2384 1766 157 14 20 chr1 39778986 39779279 -202885074 - AluJo SINE Alu -21 291 1 242 208 231 69 chr1 39779279 39779409 -202884944 - L1ME3A LINE L1 -3818 2397 2247 987 266 63 34 chr1 39779876 39780841 -202883512 - L1MEd LINE L1 -4581 1815 781 743 193 45 87 chr1 39780850 39781114 -202883239 - MER2 DNA MER2_type -1 344 92 935 147 6 62 chr1 39781117 39781294 -202883059 - AluJb SINE Alu -16 296 130 565 30 0 0 chr1 39781331 39781397 -202882956 - AluY SINE Alu -181 130 65 2407 273 14 17 chr1 39831399 39832061 -202832292 - L1MEd LINE L1 -5702 694 35 1513 278 130 16 chr1 39832066 39833068 -202831285 + L2 LINE L2 2199 3313 0 209 317 83 25 chr1 39833890 39834010 -202830343 - MIR SINE MIR -68 194 68 897 266 120 36 chr1 39834104 39834461 -202829892 + L2 LINE L2 2925 3311 -2 355 262 0 0 chr1 39835042 39835126 -202829227 + MIR SINE MIR 32 115 -147 270 347 44 52 chr1 39835216 39835467 -202828886 + L2 LINE L2 2995 3243 -29 673 280 30 34 chr1 39835648 39835817 -202828536 - MIR SINE MIR -25 237 66 760 242 82 26 chr1 39835817 39836011 -202828342 + MER63A DNA MER1_type 3 207 -3 673 280 30 34 chr1 39836011 39836059 -202828294 - MIR SINE MIR -196 66 19 363 301 147 67 chr1 39836060 39836359 -202827994 + L1MC4a LINE L1 5852 6174 -1634 222 37 0 0 chr1 39837011 39837038 -202827315 + (TG)n Simple_repeat Simple_repeat 2 28 0 1764 173 0 0 chr1 39837038 39837322 -202827031 - AluJb SINE Alu -28 284 1 217 222 235 12 chr1 39837606 39837687 -202826666 + L3 LINE CR1 1352 1450 -127 797 192 6 18 chr1 39837704 39837871 -202826482 + MLT1A1 LTR MaLR 229 365 0 344 325 8 0 chr1 39838467 39838584 -202825769 - L2 LINE L2 -16 3297 3180 784 272 25 42 chr1 39838928 39839167 -202825186 - MIR SINE MIR 0 262 28 225 289 7 89 chr1 39839282 39839417 -202824936 + MIR SINE MIR 80 203 -59 511 284 74 37 chr1 39841239 39841454 -202822899 + MIR SINE MIR 5 227 -35 294 180 0 0 chr1 39841460 39841521 -202822832 + CT-rich Low_complexity Low_complexity 3 63 0 1919 138 0 22 chr1 39841962 39842273 -202822080 - AluSx SINE Alu -8 304 1 234 0 0 0 chr1 39842298 39842324 -202822029 + (TC)n Simple_repeat Simple_repeat 1 26 0 243 321 18 27 chr1 39842430 39842542 -202821811 + Charlie8 DNA MER1_type 1 111 -2306 300 234 0 0 chr1 39842642 39842706 -202821647 + Charlie8 DNA MER1_type 2354 2417 0 527 318 46 15 chr1 39843185 39843380 -202820973 + MIR SINE MIR 1 201 -61 591 270 141 0 chr1 39843388 39843551 -202820802 + MER5A DNA MER1_type 4 189 0 290 252 119 28 chr1 39843648 39843791 -202820562 + MIR SINE MIR 41 196 -66 1722 164 30 0 chr1 39843899 39844198 -202820155 - AluJo SINE Alu -4 308 1 280 366 32 8 chr1 39844198 39844321 -202820032 - MIR SINE MIR -113 149 24 235 268 0 0 chr1 39844855 39844911 -202819442 + C-rich Low_complexity Low_complexity 3 58 0 282 358 53 42 chr1 39845097 39845452 -202818901 + L2 LINE L2 2225 2583 -731 896 201 64 137 chr1 39845524 39845946 -202818407 + LTR16C LTR ERVL 101 491 0 267 279 23 12 chr1 39846863 39846949 -202817404 - L3b LINE CR1 -199 1384 1298 209 204 20 0 chr1 39847521 39847570 -202816783 + (CTGGGG)n Simple_repeat Simple_repeat 3 52 0 302 288 39 0 chr1 39847858 39848011 -202816342 + (CA)n Simple_repeat Simple_repeat 2 160 0 306 287 27 13 chr1 39848062 39848212 -202816141 + (CA)n Simple_repeat Simple_repeat 1 152 0 233 298 19 10 chr1 39848459 39848563 -202815790 + (CA)n Simple_repeat Simple_repeat 2 106 0 210 71 0 0 chr1 39848814 39848842 -202815511 + (CA)n Simple_repeat Simple_repeat 1 28 0 857 213 51 23 chr1 39849023 39849239 -202815114 - MIR SINE MIR -12 250 29 303 296 76 15 chr1 39849844 39849976 -202814377 + MIR SINE MIR 13 152 -110 345 265 8 45 chr1 39850372 39851010 -202813343 + (CAGCT)n Simple_repeat Simple_repeat 1 614 0 * 390 287 0 28 chr1 39850931 39851467 -202812886 + (CAGCC)n Simple_repeat Simple_repeat 1 521 0 345 247 49 0 chr1 39853197 39853278 -202811075 + L2 LINE L2 3188 3272 0 301 45 0 0 chr1 39853330 39853374 -202810979 - L2 LINE L2 0 3313 3270 240 262 24 36 chr1 39854053 39854137 -202810216 + (CATG)n Simple_repeat Simple_repeat 3 85 0 478 226 30 30 chr1 39854302 39854435 -202809918 - MIR3 SINE MIR -35 173 41 209 226 19 0 chr1 39854557 39854610 -202809743 - L2 LINE L2 0 3272 3219 332 280 21 0 chr1 39856683 39856776 -202807577 + MIR SINE MIR 42 136 -72 249 33 0 0 chr1 39856779 39856809 -202807544 + (TAA)n Simple_repeat Simple_repeat 2 31 0 266 254 290 41 chr1 39856820 39856989 -202807364 - MIR3 SINE MIR -17 245 35 2305 92 3 0 chr1 39857056 39857361 -202806992 - AluSp SINE Alu -7 306 1 464 146 130 24 chr1 39857434 39857557 -202806796 + MER53 DNA DNA 7 142 -47 208 256 43 77 chr1 39857704 39857821 -202806532 + MIR SINE MIR 108 220 -42 239 340 95 5 chr1 39858066 39858226 -202806127 + MIR3 SINE MIR 46 218 -35 2270 77 0 17 chr1 39859139 39859438 -202804915 - AluY SINE Alu -17 294 1 355 283 5 0 chr1 39859555 39859750 -202804603 + (CA)n Simple_repeat Simple_repeat 1 196 0 1127 97 0 0 chr1 39860203 39860357 -202803996 + AluSg/x SINE Alu 159 312 0 317 355 14 22 chr1 39860467 39860605 -202803748 + MER5A DNA MER1_type 38 185 -4 202 296 45 38 chr1 39860489 39860621 -202803732 - MER5A DNA MER1_type -56 133 1 * 283 340 49 39 chr1 39860736 39860907 -202803446 - MIR SINE MIR -14 194 21 899 276 111 8 chr1 39860911 39861273 -202803080 - MLT1I LTR MaLR -3 406 8 189 0 0 0 chr1 39861405 39861426 -202802927 + (TCTCTG)n Simple_repeat Simple_repeat 3 23 0 264 306 0 54 chr1 39861482 39861593 -202802760 + MIR SINE MIR 41 145 -63 348 306 88 39 chr1 39862155 39862375 -202801978 - HAL1b LINE L1 -1 6120 1129 671 151 8 0 chr1 39862402 39862528 -202801825 + (CCCA)n Simple_repeat Simple_repeat 3 129 0 225 301 46 107 chr1 39862765 39862981 -202801372 + L2 LINE L2 3020 3222 -50 184 352 171 0 chr1 39863225 39863330 -202801023 - L3 LINE CR1 -116 1461 1339 359 264 90 26 chr1 39863333 39863488 -202800865 - MIR3 SINE MIR -9 199 35 379 282 60 85 chr1 39864097 39864345 -202800008 - MIR SINE MIR -7 255 14 * 807 297 8 23 chr1 39864280 39864536 -202799817 + MIR SINE MIR 11 262 0 394 289 176 0 chr1 39864556 39864715 -202799638 - MIR SINE MIR -12 250 64 722 269 130 46 chr1 39865215 39865538 -202798815 - L2 LINE L2 0 3313 2964 372 281 94 10 chr1 39865744 39865936 -202798417 + L2 LINE L2 2836 3043 -229 293 267 35 17 chr1 39867001 39867117 -202797236 - L2 LINE L2 0 3313 3196 287 280 88 32 chr1 39867274 39867399 -202796954 + MIR SINE MIR 59 190 -72 292 315 22 0 chr1 39867490 39867579 -202796774 + L2 LINE L2 3163 3253 -19 677 281 61 0 chr1 39868626 39868857 -202795496 - MIR SINE MIR -10 252 8 599 292 50 15 chr1 39870846 39871048 -202793305 + MIR SINE MIR 54 262 0 435 272 80 54 chr1 39871096 39871320 -202793033 + MIR SINE MIR 19 248 -14 264 260 135 10 chr1 39871975 39872071 -202792282 - MIR SINE MIR -81 127 20 2257 88 0 3 chr1 39872113 39872410 -202791943 + AluSc SINE Alu 1 296 -13 1984 129 6 22 chr1 39872722 39873039 -202791314 + AluSx SINE Alu 1 312 0 306 356 62 10 chr1 39873236 39873444 -202790909 + MIR SINE MIR 42 260 -2 201 299 103 0 chr1 39873757 39873844 -202790509 - MIR SINE MIR -81 181 86 2048 108 4 0 chr1 39873856 39874134 -202790219 + AluSq SINE Alu 11 289 -24 311 0 0 25 chr1 39874142 39874182 -202790171 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 306 299 0 11 chr1 39874351 39874438 -202789915 - MIR SINE MIR -93 115 30 264 130 0 0 chr1 39874548 39874594 -202789759 + (GGCTG)n Simple_repeat Simple_repeat 1 46 0 2262 109 3 0 chr1 39875095 39875389 -202788964 - AluSx SINE Alu -17 295 1 552 217 120 49 chr1 39877006 39877190 -202787163 - MER63A DNA MER1_type -13 197 1 645 311 55 45 chr1 39877208 39877517 -202786836 + LTR16C LTR ERVL 179 490 -1 728 238 121 4 chr1 39878880 39879111 -202785242 + MLT1J2 LTR MaLR 73 330 -120 2196 213 104 29 chr1 39879123 39879701 -202784652 + MLT1E2 LTR MaLR 6 626 0 1669 199 30 7 chr1 39879739 39880036 -202784317 + AluJo SINE Alu 1 304 -8 442 213 37 19 chr1 39880289 39880397 -202783956 - MIR3 SINE MIR -86 122 13 195 129 0 0 chr1 39880875 39880906 -202783447 + (TG)n Simple_repeat Simple_repeat 1 31 0 209 203 25 51 chr1 39882186 39882265 -202782088 + (TGG)n Simple_repeat Simple_repeat 2 78 0 277 291 32 19 chr1 39882300 39882458 -202781895 + (ATGGTG)n Simple_repeat Simple_repeat 1 160 0 552 292 73 11 chr1 39883221 39883433 -202780920 + MIR SINE MIR 7 228 -34 372 348 39 17 chr1 39883923 39884104 -202780249 + MIR SINE MIR 3 187 -75 1663 227 113 18 chr1 39884105 39884621 -202779732 + MLT1E LTR MaLR 1 615 -11 468 0 0 0 chr1 39884855 39884907 -202779446 + (CA)n Simple_repeat Simple_repeat 2 53 0 215 312 11 0 chr1 39885267 39885360 -202778993 + GA-rich Low_complexity Low_complexity 2 95 0 397 262 19 0 chr1 39886701 39886804 -202777549 + MER103 DNA DNA 58 162 -4 232 309 0 0 chr1 39887112 39887167 -202777186 + (TG)n Simple_repeat Simple_repeat 1 55 0 186 43 0 0 chr1 39887477 39887500 -202776853 + (TA)n Simple_repeat Simple_repeat 2 24 0 1689 180 122 20 chr1 39887508 39888059 -202776294 + MLT1E1 LTR MaLR 1 592 -1 254 267 50 17 chr1 39888106 39888226 -202776127 + (CATATA)n Simple_repeat Simple_repeat 6 129 0 249 108 0 0 chr1 39888234 39888271 -202776082 + (CA)n Simple_repeat Simple_repeat 2 38 0 363 184 53 0 chr1 39888368 39888444 -202775909 - MIR SINE MIR 0 262 183 950 175 16 21 chr1 39888988 39889182 -202775171 - MIR SINE MIR -5 257 65 245 272 25 12 chr1 39890087 39890168 -202774185 + (CCAA)n Simple_repeat Simple_repeat 1 82 0 239 247 117 0 chr1 39890204 39890281 -202774072 - L2 LINE L2 -50 3222 3137 673 226 55 0 chr1 39890546 39890710 -202773643 + MIR SINE MIR 89 261 -1 180 200 0 0 chr1 39892765 39892820 -202771533 + (CA)n Simple_repeat Simple_repeat 1 55 0 252 216 0 0 chr1 39892872 39892969 -202771384 + (CA)n Simple_repeat Simple_repeat 1 97 0 290 221 0 26 chr1 39892972 39893049 -202771304 + (CATA)n Simple_repeat Simple_repeat 1 75 0 387 237 0 0 chr1 39893063 39893240 -202771113 + (CA)n Simple_repeat Simple_repeat 2 178 0 259 253 6 6 chr1 39893257 39893423 -202770930 + (CA)n Simple_repeat Simple_repeat 1 166 0 222 229 0 0 chr1 39894174 39894244 -202770109 + (TG)n Simple_repeat Simple_repeat 2 71 0 223 191 43 0 chr1 39894879 39894926 -202769427 + L2 LINE L2 3223 3271 -1 483 206 3 0 chr1 39895011 39895117 -202769236 - MIR SINE MIR -65 143 35 1427 273 112 8 chr1 39895172 39895643 -202768710 + MLT1H1 LTR MaLR 13 552 -3 200 167 24 24 chr1 39895647 39895731 -202768622 + (CA)n Simple_repeat Simple_repeat 2 85 0 201 74 0 0 chr1 39896659 39896686 -202767667 + (TG)n Simple_repeat Simple_repeat 1 27 0 1001 289 113 47 chr1 39896888 39897845 -202766508 - L2 LINE L2 -57 3256 2243 2785 174 29 15 chr1 39897985 39898532 -202765821 + L1MB3 LINE L1 5628 6182 -1 818 236 10 15 chr1 39898532 39898731 -202765622 + MIR SINE MIR 19 216 -46 612 198 0 0 chr1 39898810 39898916 -202765437 + AluJb SINE Alu 21 126 -186 442 128 96 0 chr1 39898982 39899076 -202765277 - L1MB3 LINE L1 -1 6182 6080 2363 84 20 0 chr1 39899970 39900266 -202764087 - AluSc SINE Alu -7 302 1 534 160 16 24 chr1 39900328 39900444 -202763909 - MLT1F LTR MaLR 0 542 428 3462 107 12 0 chr1 39900444 39900928 -202763425 - MER1A DNA MER1_type 0 529 40 1946 197 72 58 chr1 39900908 39901323 -202763030 - MLT1F1 LTR MaLR -77 490 83 * 1904 153 38 0 chr1 39901323 39901611 -202762742 - AluJb SINE Alu -13 299 1 1946 197 72 58 chr1 39901611 39901654 -202762699 - MLT1F1 LTR MaLR -484 83 42 2257 107 0 3 chr1 39901654 39901952 -202762401 - AluSc SINE Alu -12 297 1 1946 197 72 58 chr1 39901952 39901975 -202762378 - MLT1F1 LTR MaLR -525 42 1 481 330 47 34 chr1 39902304 39902537 -202761816 + MIR SINE MIR 3 238 -24 373 258 133 12 chr1 39903350 39903513 -202760840 + MIR SINE MIR 16 197 -59 583 181 181 0 chr1 39903756 39903911 -202760442 + MER5A DNA MER1_type 6 188 -1 262 289 13 13 chr1 39904194 39904343 -202760010 + (TG)n Simple_repeat Simple_repeat 1 149 0 201 147 0 0 chr1 39904746 39904780 -202759573 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 215 280 20 0 chr1 39905656 39905706 -202758647 - L2 LINE L2 -86 3186 3136 625 266 35 25 chr1 39905829 39906028 -202758325 + MIR SINE MIR 46 246 -16 322 316 18 26 chr1 39907140 39907254 -202757099 - MIR SINE MIR -13 249 137 402 245 211 20 chr1 39907285 39907489 -202756864 + L2 LINE L2 3011 3253 -60 1989 100 4 0 chr1 39907581 39907842 -202756511 + AluSx SINE Alu 44 305 -7 1096 234 150 28 chr1 39908649 39909033 -202755320 + LTR33 LTR ERVL 5 456 -65 2218 126 3 0 chr1 39909033 39909327 -202755026 - AluSx SINE Alu -17 295 1 1096 234 150 28 chr1 39909327 39909403 -202754950 + LTR33 LTR ERVL 456 521 0 235 114 0 0 chr1 39910479 39910514 -202753839 + MIR SINE MIR 120 154 -108 456 256 12 22 chr1 39910527 39910731 -202753622 - MIR3 SINE MIR -48 214 14 1115 278 80 44 chr1 39910767 39911538 -202752815 - L1MC4a LINE L1 -743 5403 4662 2872 19 0 0 chr1 39911538 39911848 -202752505 + AluYb8 SINE Alu 1 310 -8 507 73 0 0 chr1 39911848 39911916 -202752437 + (TA)n Simple_repeat Simple_repeat 2 69 0 1115 278 80 44 chr1 39911916 39912064 -202752289 - L1MC4a LINE L1 -1130 5016 4875 4872 130 42 37 chr1 39912072 39912582 -202751771 - L1MA9 LINE L1 -6 6306 5787 2339 104 3 3 chr1 39912582 39912891 -202751462 - AluSx SINE Alu -3 309 1 4872 130 42 37 chr1 39912891 39913332 -202751021 - L1MA9 LINE L1 -525 5787 5350 577 334 117 23 chr1 39913367 39913588 -202750765 - L1MC4a LINE L1 -1318 4828 4629 1867 155 28 0 chr1 39913588 39913872 -202750481 + AluJo SINE Alu 5 296 -16 577 334 117 23 chr1 39913872 39914682 -202749671 - L1MC4a LINE L1 -1517 4629 3700 813 140 0 0 chr1 39914684 39914820 -202749533 + (TG)n Simple_repeat Simple_repeat 1 136 0 327 358 28 32 chr1 39914829 39915047 -202749306 - L1MC4a LINE L1 -2469 3677 3461 490 268 16 0 chr1 39916615 39916738 -202747615 - L2 LINE L2 -1 3312 3188 255 261 0 14 chr1 39916738 39916807 -202747546 - MLT1K LTR MaLR -334 254 187 324 353 50 33 chr1 39918295 39918714 -202745639 + L2 LINE L2 2550 2975 -339 597 281 19 19 chr1 39918730 39918940 -202745413 + L2 LINE L2 2355 2564 -750 626 253 93 0 chr1 39918970 39919120 -202745233 - LTR16C LTR ERVL -128 363 200 194 170 0 64 chr1 39919625 39919672 -202744681 + L2 LINE L2 3224 3267 -5 290 318 16 8 chr1 39919677 39919806 -202744547 + L2 LINE L2 2704 2833 -481 250 352 24 0 chr1 39920050 39920175 -202744178 + L2 LINE L2 2934 3061 -211 309 315 24 47 chr1 39920328 39920455 -202743898 - L1ME3A LINE L1 -2 6168 6045 2112 124 17 3 chr1 39920457 39920756 -202743597 + AluSx SINE Alu 1 303 -9 414 205 17 12 chr1 39920756 39920885 -202743468 - MIR SINE MIR -63 145 14 1015 174 0 0 chr1 39920913 39921097 -202743256 + MER53 DNA DNA 5 188 -1 186 321 37 0 chr1 39921186 39921267 -202743086 + L2 LINE L2 3185 3268 -4 1999 144 20 3 chr1 39921372 39921650 -202742703 + AluJo SINE Alu 1 286 -26 243 61 0 0 chr1 39921650 39921683 -202742670 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 1999 144 20 3 chr1 39921683 39921703 -202742650 + AluJo SINE Alu 286 304 -8 264 242 11 0 chr1 39921863 39921932 -202742421 - MIR SINE MIR -63 145 94 334 276 31 0 chr1 39922519 39922617 -202741736 + (CCCCAG)n Simple_repeat Simple_repeat 6 106 0 187 264 36 100 chr1 39923033 39923143 -202741210 + L3 LINE CR1 1038 1140 -437 476 335 112 27 chr1 39923655 39923986 -202740367 - L2 LINE L2 0 3313 2955 394 341 76 9 chr1 39924099 39924322 -202740031 - MIR SINE MIR -7 255 18 2250 133 44 29 chr1 39924692 39925076 -202739277 + MLT1B LTR MaLR 1 390 0 3189 205 65 16 chr1 39925911 39926671 -202737682 - MER21B LTR ERV1 -54 809 13 605 241 7 22 chr1 39926846 39926983 -202737370 + MIR SINE MIR 47 181 -81 257 326 20 10 chr1 39926991 39927089 -202737264 - MIR SINE MIR -142 120 22 377 253 81 0 chr1 39927756 39927843 -202736510 + MIR SINE MIR 50 143 -65 1527 127 4 0 chr1 39927886 39928115 -202736238 + L1PB1 LINE L1 5922 6151 0 2212 105 30 13 chr1 39928332 39928637 -202735716 - AluSx SINE Alu -2 310 1 626 249 65 5 chr1 39928771 39928956 -202735397 + MIR SINE MIR 54 249 -13 215 319 29 68 chr1 39928978 39929185 -202735168 + L2 LINE L2 1787 1985 -1329 2474 190 26 6 chr1 39930041 39930531 -202733822 + MLT1D LTR MaLR 6 505 0 358 330 74 51 chr1 39930536 39930969 -202733384 - L2 LINE L2 -102 3170 2745 646 268 29 14 chr1 39930975 39931184 -202733169 + MLT1H LTR MaLR 13 224 -325 397 190 10 80 chr1 39931284 39931384 -202732969 + MLT1H LTR MaLR 454 546 -3 1035 232 65 127 chr1 39932138 39932330 -202732023 - L2 LINE L2 -422 2892 2690 218 54 0 27 chr1 39932330 39932367 -202731986 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 2219 73 4 4 chr1 39932367 39932640 -202731713 - AluSc SINE Alu -32 277 5 1035 232 65 127 chr1 39932640 39932901 -202731452 - L2 LINE L2 -623 2691 2503 200 86 29 0 chr1 39932901 39932936 -202731417 + (TG)n Simple_repeat Simple_repeat 1 36 0 1035 232 65 127 chr1 39932936 39933252 -202731101 - L2 LINE L2 -811 2503 2169 394 306 21 42 chr1 39933256 39933400 -202730953 + L2 LINE L2 3171 3311 -2 369 243 37 37 chr1 39934448 39934555 -202729798 + MIR SINE MIR 100 206 -56 319 253 84 0 chr1 39934559 39934642 -202729711 + MIR SINE MIR 119 208 -54 295 200 46 0 chr1 39934660 39934725 -202729628 + MIR SINE MIR 139 206 -56 340 186 43 0 chr1 39934740 39934810 -202729543 + MIR SINE MIR 134 206 -56 394 283 26 9 chr1 39934825 39934938 -202729415 + MIR SINE MIR 134 248 -14 472 223 97 0 chr1 39935116 39935219 -202729134 + MER81 DNA DNA 2 114 0 271 299 41 21 chr1 39935916 39936013 -202728340 + MIR SINE MIR 45 143 -65 608 48 12 0 chr1 39936280 39936364 -202727989 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 373 200 0 0 chr1 39936364 39936429 -202727924 - FLAM SINE Alu -15 118 54 271 285 85 50 chr1 39936583 39936773 -202727580 + MIR SINE MIR 2 195 -67 2319 115 0 0 chr1 39936927 39937223 -202727130 - AluSq SINE Alu -17 296 1 827 216 51 28 chr1 39938022 39938493 -202725860 + LTR33 LTR ERVL 13 521 0 392 314 109 29 chr1 39939460 39939699 -202724654 + L2 LINE L2 2542 2799 -515 223 314 89 96 chr1 39939726 39939997 -202724356 + L2 LINE L2 2992 3260 -12 * 765 226 211 64 chr1 39939971 39940378 -202723975 - L2 LINE L2 0 3313 2847 271 214 22 34 chr1 39940388 39940477 -202723876 - MER97b DNA MER1_type? -874 179 92 214 278 0 0 chr1 39940600 39940654 -202723699 + MIR SINE MIR 69 122 -140 1687 159 4 0 chr1 39940706 39940970 -202723383 - AluJb SINE Alu -46 266 2 1598 211 51 33 chr1 39941457 39941509 -202722844 - MLT1C LTR MaLR 0 467 417 375 23 0 0 chr1 39941509 39941553 -202722800 + (CA)n Simple_repeat Simple_repeat 2 45 0 1598 211 51 33 chr1 39941553 39941954 -202722399 - MLT1C LTR MaLR -50 417 6 2583 72 3 0 chr1 39942608 39942914 -202721439 + AluSc SINE Alu 1 307 -2 441 185 12 7 chr1 39943067 39943163 -202721190 - MIR SINE MIR -46 162 69 410 243 81 27 chr1 39944413 39944524 -202719829 - MIR SINE MIR -126 136 20 605 196 9 0 chr1 39947490 39947602 -202716751 - MER45A DNA AcHobo -3 175 63 451 319 128 15 chr1 39947671 39947944 -202716409 - LTR16C LTR ERVL -25 466 163 1593 162 25 32 chr1 39947945 39948259 -202716094 - AluJo SINE Alu 0 312 1 341 205 12 24 chr1 39949411 39949494 -202714859 + MLT1J2 LTR MaLR 1 82 -368 318 337 48 42 chr1 39949496 39949662 -202714691 - L2 LINE L2 -234 3038 2872 237 273 53 61 chr1 39950241 39950373 -202713980 - MIR SINE MIR -95 167 37 466 304 65 18 chr1 39950789 39950957 -202713396 + MIR SINE MIR 20 195 -67 483 304 187 38 chr1 39951009 39952431 -202711922 + L2 LINE L2 1224 3306 -7 909 238 35 5 chr1 39953166 39953368 -202710985 + MIR SINE MIR 7 214 -48 1838 86 0 16 chr1 39953536 39953781 -202710572 + AluSq SINE Alu 73 313 0 488 282 40 0 chr1 39953849 39953973 -202710380 + MIR3 SINE MIR 31 159 -49 657 230 45 28 chr1 39953982 39954160 -202710193 + MER117 DNA MER1_type 16 196 -1 673 224 25 84 chr1 39955305 39955542 -202708811 + MIR SINE MIR 37 259 -3 1250 214 135 77 chr1 39956736 39957231 -202707122 - MLT1H LTR MaLR 0 549 26 1913 221 66 17 chr1 39958426 39958896 -202705457 - MLT1D LTR MaLR -12 493 1 746 300 63 4 chr1 39958896 39959149 -202705204 + LTR16C LTR ERVL 224 491 0 190 357 36 12 chr1 39959243 39959327 -202705026 + MIR SINE MIR 1 86 -176 596 256 121 20 chr1 39959778 39960075 -202704278 + Charlie7 DNA MER1_type 43 369 -2243 1299 246 92 17 chr1 39960078 39960537 -202703816 - L1ME3A LINE L1 -5 6165 5673 682 239 173 7 chr1 39960541 39960847 -202703506 + Charlie7 DNA MER1_type 353 709 -1903 2621 82 8 45 chr1 39960920 39961208 -202703145 - L1PB1 LINE L1 -7 6144 5874 1717 79 5 0 chr1 39961208 39961423 -202702930 + AluY SINE Alu 84 299 -12 2621 82 8 45 chr1 39961423 39961535 -202702818 - L1PB1 LINE L1 -277 5874 5759 1292 232 74 6 chr1 39961584 39961907 -202702446 + MLT1I LTR MaLR 65 409 0 3252 229 52 23 chr1 39961916 39962788 -202701565 + Charlie7 DNA MER1_type 716 1561 -1051 7601 26 0 5 chr1 39962788 39963742 -202700611 - L1PA4 LINE L1 0 6155 5199 2365 97 7 7 chr1 39963742 39964052 -202700301 - AluY SINE Alu -1 310 1 3252 229 52 23 chr1 39964052 39964130 -202700223 + Charlie7 DNA MER1_type 1560 1695 -917 369 86 0 0 chr1 39964146 39964204 -202700149 + (TA)n Simple_repeat Simple_repeat 2 59 0 2153 124 3 3 chr1 39964204 39964510 -202699843 - AluSx SINE Alu -6 306 1 1346 155 30 4 chr1 39964517 39964782 -202699571 - L1MD3 LINE L1 0 7995 7724 2697 193 59 37 chr1 39964802 39965421 -202698932 + Charlie7 DNA MER1_type 1713 2356 -256 2036 137 0 17 chr1 39965421 39965746 -202698607 - AluSq SINE Alu 0 313 1 2697 193 59 37 chr1 39965746 39965934 -202698419 + Charlie7 DNA MER1_type 2356 2538 -74 1205 237 89 60 chr1 39966526 39966977 -202697376 + MLT1C LTR MaLR 4 467 0 459 224 24 0 chr1 39967454 39967579 -202696774 - LTR16C LTR ERVL 0 491 364 391 182 0 30 chr1 39967597 39967696 -202696657 + G-rich Low_complexity Low_complexity 5 100 0 396 269 0 0 chr1 39967787 39967962 -202696391 + GA-rich Low_complexity Low_complexity 4 178 0 332 260 0 6 chr1 39967929 39968098 -202696255 + G-rich Low_complexity Low_complexity 4 171 0 * 269 266 0 7 chr1 39968127 39968266 -202696087 + G-rich Low_complexity Low_complexity 40 177 0 222 229 0 0 chr1 39968266 39968314 -202696039 + GA-rich Low_complexity Low_complexity 5 52 0 754 225 56 44 chr1 39968318 39968567 -202695786 - LTR16C LTR ERVL -89 402 151 337 214 0 0 chr1 39968887 39968954 -202695399 - MIR SINE MIR -61 147 104 206 320 0 13 chr1 39969131 39969209 -202695144 - MIR SINE MIR -105 157 81 752 213 55 6 chr1 39969533 39969697 -202694656 + MIR SINE MIR 16 187 -75 378 307 236 21 chr1 39970172 39970849 -202693504 + L2 LINE L2 2028 2850 -464 468 260 34 111 chr1 39971720 39971955 -202692398 - L2 LINE L2 -69 3203 2987 306 335 6 22 chr1 39972693 39972872 -202691481 + GA-rich Low_complexity Low_complexity 1 176 0 338 260 0 6 chr1 39973142 39973319 -202691034 + (CA)n Simple_repeat Simple_repeat 1 176 0 236 269 85 31 chr1 39973562 39973692 -202690661 - MIR SINE MIR -55 153 17 387 280 55 0 chr1 39974244 39974391 -202689962 - MIR SINE MIR -20 242 85 534 286 176 5 chr1 39974622 39974821 -202689532 + MIR SINE MIR 27 259 -3 911 274 48 24 chr1 39975269 39975521 -202688832 - MIR SINE MIR -2 260 3 256 275 43 0 chr1 39976208 39976277 -202688076 + MIR SINE MIR 87 158 -104 184 305 11 74 chr1 39976292 39976342 -202688011 + L2 LINE L2 3184 3227 -45 2445 81 7 0 chr1 39976342 39976649 -202687704 + AluY SINE Alu 1 309 -2 184 305 11 74 chr1 39976649 39976693 -202687660 + L2 LINE L2 3227 3272 0 726 283 74 52 chr1 39976843 39977249 -202687104 + MLT1L LTR MaLR 201 615 0 186 222 0 0 chr1 39977930 39977966 -202686387 - L2 LINE L2 -1 3312 3277 661 345 12 4 chr1 39977976 39978225 -202686128 + MIR SINE MIR 11 261 -1 598 293 133 54 chr1 39978950 39979281 -202685072 + L2 LINE L2 2916 3272 0 1061 94 11 11 chr1 39979544 39979724 -202684629 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 815 139 6 18 chr1 39979724 39979889 -202684464 + CT-rich Low_complexity Low_complexity 3 165 0 302 78 0 20 chr1 39979892 39979943 -202684410 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 306 267 0 13 chr1 39980291 39980366 -202683987 + L2 LINE L2 2986 3059 -213 1292 301 185 5 chr1 39980737 39981365 -202682988 + L2 LINE L2 1920 2660 -654 535 282 28 7 chr1 39981403 39981545 -202682808 + MIR SINE MIR 20 164 -98 487 309 152 14 chr1 39981693 39981903 -202682450 - MIR SINE MIR -5 257 19 241 167 24 0 chr1 39981915 39981957 -202682396 - 5S rRNA rRNA -76 45 3 2315 183 26 2 chr1 39982162 39982578 -202681775 - MSTB LTR MaLR 0 426 1 248 248 217 0 chr1 39983391 39983520 -202680833 - MLT1K LTR MaLR -20 568 412 2326 77 20 0 chr1 39983974 39984272 -202680081 - AluSx SINE Alu -8 304 1 421 277 23 31 chr1 39984873 39985003 -202679350 - MIR3 SINE MIR -65 143 15 291 339 68 25 chr1 39985271 39985551 -202678802 + L2 LINE L2 2245 2536 -778 472 223 97 0 chr1 39987791 39987894 -202676459 - MER81 DNA DNA 0 114 2 394 283 26 9 chr1 39988072 39988185 -202676168 - MIR SINE MIR -14 248 134 340 186 43 0 chr1 39988200 39988270 -202676083 - MIR SINE MIR -56 206 134 295 200 46 0 chr1 39988285 39988350 -202676003 - MIR SINE MIR -56 206 139 319 253 84 0 chr1 39988368 39988451 -202675902 - MIR SINE MIR -54 208 119 369 243 37 37 chr1 39988455 39988562 -202675791 - MIR SINE MIR -56 206 100 418 343 174 0 chr1 39990152 39990353 -202674000 - MIR SINE MIR -15 247 12 203 184 0 0 chr1 39991170 39991208 -202673145 + CT-rich Low_complexity Low_complexity 1 38 0 626 305 107 33 chr1 39991231 39991792 -202672561 - L2 LINE L2 -13 3300 2684 1166 70 0 0 chr1 39992648 39992790 -202671563 - AluY SINE Alu -8 303 162 349 281 172 19 chr1 39993522 39993778 -202670575 + MER102b DNA MER1_type 47 341 0 331 232 0 14 chr1 39993816 39993885 -202670468 - MIR SINE MIR -111 151 84 609 209 8 16 chr1 39993963 39994092 -202670261 - FLAM_A SINE Alu -5 128 1 460 289 29 79 chr1 39994103 39994175 -202670178 + MLT1J LTR MaLR 135 209 -302 2166 129 0 3 chr1 39994175 39994469 -202669884 + AluSx SINE Alu 1 293 -19 460 289 29 79 chr1 39994469 39994673 -202669680 + MLT1J LTR MaLR 209 397 -114 265 304 76 11 chr1 39994714 39994806 -202669547 - MIR SINE MIR -152 110 13 2260 122 0 0 chr1 39995285 39995588 -202668765 + AluSg SINE Alu 1 303 -7 1152 140 63 13 chr1 39995898 39996268 -202668085 + MLT2A2 LTR ERVL 149 453 0 215 306 53 47 chr1 39996284 39996454 -202667899 + L2 LINE L2 1932 2102 -1212 238 244 0 0 chr1 39996459 39996504 -202667849 + polypyrimidine Low_complexity Low_complexity 3 47 0 810 299 49 19 chr1 39996587 39996998 -202667355 - LTR16A LTR ERVL -6 444 22 222 281 47 0 chr1 39997197 39997261 -202667092 - L2 LINE L2 0 3313 3247 798 204 26 31 chr1 39998993 39999219 -202665134 + LTR33 LTR ERVL 2 226 -295 522 324 121 33 chr1 39999892 40000256 -202664097 - L3 LINE CR1 -2 1575 1180 409 219 116 0 chr1 40000469 40000604 -202663749 + MIR SINE MIR 34 187 -69 219 326 29 58 chr1 40000890 40001028 -202663325 + MIR SINE MIR 64 197 -65 248 269 137 56 chr1 40001233 40001322 -202663031 - L3 LINE CR1 -11 1566 1486 1741 157 56 17 chr1 40001322 40001609 -202662744 - AluJo SINE Alu -14 298 1 248 269 137 56 chr1 40001609 40001768 -202662585 - L3 LINE CR1 -91 1486 1298 1116 329 122 37 chr1 40002033 40003152 -202661201 + L2 LINE L2 1447 2660 -654 255 172 0 35 chr1 40003325 40003383 -202660970 + (TG)n Simple_repeat Simple_repeat 1 56 0 2402 107 0 10 chr1 40003416 40003724 -202660629 + AluSq SINE Alu 1 305 -8 292 283 94 38 chr1 40004362 40004521 -202659832 - L2 LINE L2 -2 3270 3103 1003 219 86 9 chr1 40004636 40004869 -202659484 + MIR SINE MIR 12 262 0 338 259 54 18 chr1 40005414 40005526 -202658827 - LTR33A LTR ERVL 0 523 408 301 235 59 39 chr1 40005933 40006035 -202658318 - MIR SINE MIR -56 152 49 244 211 18 0 chr1 40006486 40006543 -202657810 - LTR67 LTR ERVL -12 545 488 456 51 0 0 chr1 40007556 40007615 -202656738 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 3523 175 31 15 chr1 40008556 40009237 -202655116 - L1MB5 LINE L1 0 6174 5483 1213 135 6 0 chr1 40009257 40009435 -202654918 - AluSg/x SINE Alu -18 294 116 587 320 11 11 chr1 40009463 40009644 -202654709 - MIR SINE MIR -74 188 8 353 285 91 0 chr1 40009706 40009833 -202654520 + MIR SINE MIR 71 211 -51 273 309 32 8 chr1 40010075 40010198 -202654155 - L1ME4a LINE L1 -3 6118 5993 277 292 130 26 chr1 40010401 40010555 -202653798 + MIR SINE MIR 36 205 -57 243 0 0 0 chr1 40010727 40010754 -202653599 + (TG)n Simple_repeat Simple_repeat 2 28 0 1350 273 24 54 chr1 40012204 40012867 -202651486 - L1ME4a LINE L1 -208 5913 5271 2086 108 34 7 chr1 40012971 40013268 -202651085 - AluSc SINE Alu 0 309 5 4206 103 39 15 chr1 40013731 40014243 -202650110 + L1PB2 LINE L1 5465 5998 -153 2181 115 0 14 chr1 40014243 40014538 -202649815 + AluSx SINE Alu 1 291 -21 4206 103 39 15 chr1 40014538 40014696 -202649657 + L1PB2 LINE L1 5998 6151 0 429 237 11 0 chr1 40014953 40015046 -202649307 + L2 LINE L2 3220 3313 0 584 328 132 14 chr1 40015072 40015429 -202648924 + L1MC/D LINE L1 4875 5273 -873 458 324 108 17 chr1 40015437 40015900 -202648453 + L1MC/D LINE L1 5285 5789 -2019 1753 213 75 19 chr1 40015902 40016249 -202648104 - Charlie4a DNA MER1_type -1454 507 126 2246 176 112 4 chr1 40016249 40016704 -202647649 - MLT1D LTR MaLR 0 505 2 1753 213 75 19 chr1 40016704 40016825 -202647528 - Charlie4a DNA MER1_type -1835 126 13 361 284 9 9 chr1 40016831 40016947 -202647406 - L1ME LINE L1 -528 5593 5478 253 214 36 0 chr1 40016947 40017003 -202647350 + GA-rich Low_complexity Low_complexity 3 60 0 2292 110 3 0 chr1 40017073 40017374 -202646979 - AluSg SINE Alu -5 305 4 989 224 22 22 chr1 40017437 40017660 -202646693 - MER58A DNA MER1_type 0 224 2 1435 171 55 7 chr1 40017669 40017978 -202646375 - MER33 DNA MER1_type 0 324 1 405 358 50 39 chr1 40018009 40018288 -202646065 - HAL1b LINE L1 -969 379 98 298 271 43 58 chr1 40018720 40018927 -202645426 - MLT1H LTR MaLR -237 312 109 2145 116 7 0 chr1 40018971 40019264 -202645089 + AluY SINE Alu 1 295 -16 945 247 31 9 chr1 40019277 40019616 -202644737 + L1ME1 LINE L1 5427 5969 -197 264 310 23 23 chr1 40021204 40021333 -202643020 - L1ME LINE L1 -417 5704 5576 639 283 92 33 chr1 40021476 40021780 -202642573 - MLT1K LTR MaLR -159 429 108 228 308 0 15 chr1 40022679 40022748 -202641605 + C-rich Low_complexity Low_complexity 1 67 0 304 340 32 19 chr1 40023278 40023434 -202640919 - MIR SINE MIR -17 245 88 437 256 0 73 chr1 40023521 40023712 -202640641 + G-rich Low_complexity Low_complexity 1 177 0 366 304 128 7 chr1 40024178 40024326 -202640027 + MIR SINE MIR 76 241 -21 1051 240 66 48 chr1 40024394 40024504 -202639849 - LTR16A LTR ERVL -96 354 247 585 229 9 0 chr1 40024504 40024613 -202639740 + MER81 DNA DNA 5 114 0 1051 240 66 48 chr1 40024613 40024835 -202639518 - LTR16A LTR ERVL -203 247 16 981 233 52 4 chr1 40025237 40025469 -202638884 - MIR SINE MIR 0 262 20 330 266 266 0 chr1 40025614 40025742 -202638611 - MIR SINE MIR -28 234 73 1644 250 43 41 chr1 40025744 40025812 -202638541 - MLT1H1 LTR MaLR 0 555 489 6455 30 3 0 chr1 40025812 40026557 -202637796 + L1PA4 LINE L1 5409 6155 0 1644 250 43 41 chr1 40026557 40027042 -202637311 - MLT1H1 LTR MaLR -66 489 1 183 311 182 0 chr1 40027515 40027663 -202636690 + L2 LINE L2 2711 2885 -429 354 120 40 0 chr1 40027754 40027829 -202636524 + GA-rich Low_complexity Low_complexity 2 79 0 375 262 65 12 chr1 40027831 40027999 -202636354 + MLT1K LTR MaLR 395 571 -17 266 196 18 0 chr1 40028116 40028172 -202636181 - MIR SINE MIR -55 153 97 483 251 29 18 chr1 40028555 40028726 -202635627 + L2 LINE L2 2861 3033 -239 2113 106 0 3 chr1 40028730 40029022 -202635331 - AluSg SINE Alu -19 291 1 315 208 104 0 chr1 40029046 40029123 -202635230 - L2 LINE L2 -1 3312 3228 486 212 0 0 chr1 40029170 40029335 -202635018 + (CA)n Simple_repeat Simple_repeat 2 166 0 612 186 0 0 chr1 40029381 40029558 -202634795 + (CA)n Simple_repeat Simple_repeat 2 178 0 434 210 0 6 chr1 40029578 40029759 -202634594 + (CA)n Simple_repeat Simple_repeat 1 180 0 326 300 86 36 chr1 40029789 40029929 -202634424 - L2 LINE L2 -221 3092 2946 2958 99 67 2 chr1 40030091 40030526 -202633827 - L1PA11 LINE L1 0 6174 5712 3020 72 16 11 chr1 40030526 40030968 -202633385 + L1PA11 LINE L1 5268 5711 -463 1049 315 129 6 chr1 40030968 40031517 -202632836 - L2 LINE L2 -569 2745 2129 635 281 22 6 chr1 40031602 40031780 -202632573 - MLT1A1 LTR MaLR -4 463 283 499 290 99 48 chr1 40032471 40032785 -202631568 - L2 LINE L2 0 3313 2984 228 67 0 0 chr1 40033319 40033349 -202631004 + (TGAG)n Simple_repeat Simple_repeat 1 30 0 664 284 50 20 chr1 40033500 40033701 -202630652 + MER63A DNA MER1_type 3 209 -1 880 291 8 23 chr1 40033802 40034060 -202630293 + MIR SINE MIR 2 255 -7 647 226 51 0 chr1 40034108 40034285 -202630068 + L1M4 LINE L1 2375 2560 -3586 3920 29 0 0 chr1 40034312 40034760 -202629593 - L1PA3 LINE L1 0 6155 5708 513 250 0 0 chr1 40036360 40036532 -202627821 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 307 287 111 0 chr1 40036637 40036745 -202627608 + MIR SINE MIR 2 121 -141 1441 255 71 15 chr1 40037022 40037489 -202626864 + L2 LINE L2 2821 3313 0 438 263 117 0 chr1 40038000 40038137 -202626216 + L2 LINE L2 2926 3078 -235 463 287 30 30 chr1 40038214 40038381 -202625972 - MIR SINE MIR -76 186 20 1510 179 51 16 chr1 40039327 40039408 -202624945 - MER33 DNA MER1_type -2261 324 247 2353 97 0 0 chr1 40039408 40039717 -202624636 + AluSq SINE Alu 1 309 -4 1510 179 51 16 chr1 40039717 40039948 -202624405 - MER33 DNA MER1_type -2338 247 1 961 233 92 12 chr1 40040041 40040281 -202624072 + MLT1I LTR MaLR 14 272 -137 805 206 70 53 chr1 40040308 40040536 -202623817 - MLT1A1 LTR MaLR -133 232 1 180 205 26 0 chr1 40041896 40041923 -202622430 + MIR SINE MIR 66 93 -169 466 276 41 40 chr1 40041923 40042074 -202622279 + MIR SINE MIR 3 152 -61 491 281 45 13 chr1 40043216 40043425 -202620928 - MIR SINE MIR -4 258 41 230 241 19 0 chr1 40045016 40045070 -202619283 + MER63 DNA MER1_type 1 681 -381 2127 121 0 6 chr1 40045077 40045391 -202618962 + AluSx SINE Alu 1 312 0 1505 172 54 34 chr1 40045412 40045766 -202618587 + MER63 DNA MER1_type 674 1034 -28 294 316 105 0 chr1 40045802 40045916 -202618437 + L2 LINE L2 3188 3313 0 265 77 58 19 chr1 40046050 40046102 -202618251 + GA-rich Low_complexity Low_complexity 3 56 0 368 266 0 0 chr1 40046138 40046217 -202618136 + MLT1I LTR MaLR 370 448 -57 420 116 0 14 chr1 40046255 40046324 -202618029 + MLT1D LTR MaLR 438 505 0 2775 99 27 10 chr1 40046768 40047180 -202617173 - L1PA14 LINE L1 0 6161 5743 875 78 0 63 chr1 40047403 40047545 -202616808 - L1PA14 LINE L1 -409 5752 5620 700 254 85 34 chr1 40047728 40047964 -202616389 - MIR SINE MIR 0 262 15 294 210 16 0 chr1 40047991 40048053 -202616300 + MIR SINE MIR 117 179 -83 580 261 84 4 chr1 40048842 40049051 -202615302 + MIR SINE MIR 25 247 -15 263 327 87 13 chr1 40049454 40049604 -202614749 - MIR3 SINE MIR -9 199 39 433 232 94 66 chr1 40050197 40050587 -202613766 - LTR16A1 LTR ERVL -9 448 17 343 272 131 6 chr1 40050749 40050857 -202613496 - MIR SINE MIR -86 122 23 573 305 126 20 chr1 40051585 40051975 -202612378 + MLT1J2 LTR MaLR 20 450 0 664 269 6 0 chr1 40051980 40052140 -202612213 - MIR SINE MIR -12 250 90 226 143 0 71 chr1 40052144 40052186 -202612167 - L1M1 LINE L1 -5981 1584 1546 326 285 65 47 chr1 40052977 40053154 -202611199 + MIR SINE MIR 12 190 -72 275 241 269 19 chr1 40053976 40054084 -202610269 - MIR SINE MIR -55 153 19 338 299 136 16 chr1 40054151 40054335 -202610018 - MIR SINE MIR -12 250 45 396 376 45 5 chr1 40055326 40055528 -202608825 + MIR SINE MIR 36 245 -17 21 0 0 0 chr1 40055552 40055573 -202608780 + AT_rich Low_complexity Low_complexity 1 21 0 833 153 0 0 chr1 40055573 40055697 -202608656 - AluJb SINE Alu -188 124 1 504 218 35 75 chr1 40056481 40056591 -202607762 + MIR SINE MIR 35 137 -125 1383 287 117 2 chr1 40056591 40057027 -202607326 + LTR16C LTR ERVL 3 488 -3 504 218 35 75 chr1 40057027 40057090 -202607263 + MIR SINE MIR 137 201 -61 224 252 118 72 chr1 40057761 40057948 -202606405 - MIR3 SINE MIR -59 203 9 946 154 6 0 chr1 40059001 40059157 -202605196 + FRAM SINE Alu 1 154 -22 203 255 0 0 chr1 40059177 40059228 -202605125 - MIR SINE MIR -193 69 19 228 143 0 0 chr1 40059887 40059929 -202604424 + (GA)n Simple_repeat Simple_repeat 1 42 0 630 314 39 13 chr1 40060428 40060657 -202603696 - MIR SINE MIR -3 259 25 1314 105 2 4 chr1 40060658 40061461 -202602892 + (TGGA)n Simple_repeat Simple_repeat 1 844 -184 234 116 0 0 chr1 40061461 40061504 -202602849 + (TATG)n Simple_repeat Simple_repeat 1 43 0 1314 105 2 4 chr1 40061504 40061510 -202602843 + (TGGA)n Simple_repeat Simple_repeat 844 1028 0 1296 84 0 0 chr1 40061510 40061689 -202602664 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1494 53 0 0 chr1 40061842 40062105 -202602248 + (TGGA)n Simple_repeat Simple_repeat 1 263 0 227 258 0 15 chr1 40062457 40062523 -202601830 + MLT1K LTR MaLR 186 250 -338 235 303 13 0 chr1 40062646 40062722 -202601631 + MIR SINE MIR 186 262 0 229 104 0 42 chr1 40065349 40065397 -202598956 + (TA)n Simple_repeat Simple_repeat 2 47 0 236 146 0 21 chr1 40066531 40066579 -202597774 + (CA)n Simple_repeat Simple_repeat 1 47 0 226 262 33 0 chr1 40067686 40067747 -202596606 + (CATG)n Simple_repeat Simple_repeat 4 66 0 209 195 0 0 chr1 40067957 40067998 -202596355 + (CA)n Simple_repeat Simple_repeat 1 41 0 1086 271 118 30 chr1 40070997 40071465 -202592888 - L2 LINE L2 -1 3312 2804 2130 108 13 0 chr1 40071502 40071807 -202592546 - AluSc SINE Alu 0 309 1 586 291 25 80 chr1 40071865 40072192 -202592161 - L1ME LINE L1 -334 5787 5479 526 286 28 28 chr1 40072346 40072524 -202591829 + MER5B DNA MER1_type 1 178 0 364 178 0 84 chr1 40072599 40072706 -202591647 - L1MC5 LINE L1 -30 7931 7834 622 296 65 0 chr1 40072706 40072953 -202591400 - L2 LINE L2 -567 2747 2485 2408 77 3 0 chr1 40073735 40074045 -202590308 + AluSp SINE Alu 3 313 0 183 310 103 11 chr1 40074544 40074631 -202589722 - MIR SINE MIR -72 136 42 1017 260 29 0 chr1 40074698 40074944 -202589409 - MIR SINE MIR -8 254 2 1835 252 117 19 chr1 40076350 40076890 -202587463 + MLT1E LTR MaLR 1 593 0 620 138 9 0 chr1 40077205 40077321 -202587032 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 374 212 10 0 chr1 40077407 40077506 -202586847 + (TCCA)n Simple_repeat Simple_repeat 2 101 0 205 241 0 35 chr1 40077516 40077574 -202586779 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 619 283 83 5 chr1 40079049 40079254 -202585099 + MIR SINE MIR 30 250 -12 225 207 17 35 chr1 40079277 40079335 -202585018 + MIR SINE MIR 97 153 -109 277 247 47 0 chr1 40079366 40079451 -202584902 - MER102b DNA MER1_type -1 340 252 339 319 0 9 chr1 40079593 40079706 -202584647 - MIR SINE MIR 0 262 151 414 340 45 15 chr1 40079851 40080051 -202584302 - MIR SINE MIR -25 237 32 217 177 65 16 chr1 40081037 40081099 -202583254 - L2 LINE L2 -4 3309 3245 1113 251 0 15 chr1 40081177 40081436 -202582917 + MIR SINE MIR 8 262 0 204 270 44 66 chr1 40081561 40081698 -202582655 + MIR3 SINE MIR 6 139 -69 333 309 7 27 chr1 40082476 40082625 -202581728 + (CA)n Simple_repeat Simple_repeat 1 146 0 205 185 31 0 chr1 40082634 40082699 -202581654 + (CATA)n Simple_repeat Simple_repeat 2 68 0 235 355 0 0 chr1 40082716 40082823 -202581530 + (CA)n Simple_repeat Simple_repeat 2 108 0 293 367 0 17 chr1 40082924 40083104 -202581249 + (CA)n Simple_repeat Simple_repeat 2 178 0 979 177 10 56 chr1 40083697 40083829 -202580524 + MER5A DNA MER1_type 1 123 -66 2069 101 30 0 chr1 40083829 40084127 -202580226 - AluSg SINE Alu -3 307 1 979 177 10 56 chr1 40084127 40084192 -202580161 + MER5A DNA MER1_type 123 189 0 512 296 96 6 chr1 40084196 40084404 -202579949 + MIR SINE MIR 23 245 -17 1110 153 11 16 chr1 40085473 40085662 -202578691 + MER5A DNA MER1_type 1 188 -1 325 289 31 0 chr1 40085750 40085847 -202578506 + MIR SINE MIR 23 122 -86 226 315 45 11 chr1 40086687 40086776 -202577577 + L2 LINE L2 3206 3297 -16 216 294 132 48 chr1 40087215 40087443 -202576910 + L2 LINE L2 2419 2665 -649 609 324 54 22 chr1 40088117 40088488 -202575865 + L1MC4a LINE L1 5569 5951 -1857 897 264 41 41 chr1 40091209 40091270 -202573083 + MER102b DNA MER1_type 27 87 -1341 2523 55 3 3 chr1 40091270 40091580 -202572773 + AluY SINE Alu 1 310 -1 897 264 41 41 chr1 40091580 40091833 -202572520 + MER102b DNA MER1_type 86 341 0 492 239 46 0 chr1 40092256 40092386 -202571967 + MIR SINE MIR 46 181 -81 313 325 208 0 chr1 40093260 40093414 -202570939 + MIR SINE MIR 69 254 -8 221 333 128 0 chr1 40094378 40094480 -202569873 - L2 LINE L2 -17 3255 3141 1900 155 3 19 chr1 40094800 40095117 -202569236 + AluJb SINE Alu 1 312 0 411 317 0 0 chr1 40095939 40096040 -202568313 - L2 LINE L2 -38 3234 3134 203 246 49 0 chr1 40096512 40096573 -202567780 - L2 LINE L2 -63 3209 3146 285 341 0 0 chr1 40096584 40096669 -202567684 + L3 LINE CR1 1490 1574 -3 340 262 84 89 chr1 40096707 40096749 -202567604 - MARNA DNA Mariner -55 531 490 1746 162 87 6 chr1 40096749 40097070 -202567283 + MER7A DNA MER2_type 1 345 -1 340 262 84 89 chr1 40097070 40097229 -202567124 - MARNA DNA Mariner -96 490 331 247 139 0 174 chr1 40097725 40097811 -202566542 - MIR3 SINE MIR 0 208 138 286 351 89 12 chr1 40098577 40098745 -202565608 - MIR SINE MIR -78 184 4 1681 199 36 36 chr1 40098753 40098941 -202565412 + MLT1C LTR MaLR 1 188 -279 2330 102 0 3 chr1 40098941 40099254 -202565099 + AluSx SINE Alu 1 312 0 1681 199 36 36 chr1 40099254 40099456 -202564897 + MLT1C LTR MaLR 187 391 -76 414 316 102 36 chr1 40099971 40100038 -202564315 + L2 LINE L2 2749 2810 -503 1119 211 0 28 chr1 40100038 40100251 -202564102 + MER3 DNA MER1_type 1 207 -2 414 316 102 36 chr1 40100251 40100711 -202563642 + L2 LINE L2 2810 3313 0 417 302 8 8 chr1 40101422 40101551 -202562802 + L2 LINE L2 3183 3311 -2 428 231 104 66 chr1 40102459 40102641 -202561712 + L2 LINE L2 3125 3313 0 248 345 88 25 chr1 40103323 40103561 -202560792 + L2 LINE L2 2988 3240 -32 581 333 28 5 chr1 40106520 40106733 -202557620 - MIR SINE MIR -16 246 29 250 288 18 54 chr1 40107806 40107917 -202556436 - MIR SINE MIR -66 196 90 21 0 0 0 chr1 40107951 40107972 -202556381 + AT_rich Low_complexity Low_complexity 1 21 0 758 178 94 28 chr1 40108001 40108181 -202556172 - MIR SINE MIR -58 204 13 488 230 9 9 chr1 40108538 40108651 -202555702 + MIR SINE MIR 102 214 -48 225 258 113 52 chr1 40108739 40108836 -202555517 - MIR SINE MIR -24 238 136 1478 157 0 61 chr1 40108836 40109116 -202555237 + AluJo SINE Alu 1 263 -49 363 321 104 0 chr1 40109139 40109273 -202555080 - MIR SINE MIR -112 150 3 480 230 45 7 chr1 40109340 40109479 -202554874 - MIR SINE MIR -56 152 36 210 302 105 12 chr1 40110588 40110674 -202553679 - MIR SINE MIR -166 96 3 1079 126 11 6 chr1 40110685 40110860 -202553493 + MER5A DNA MER1_type 9 184 -5 394 293 24 36 chr1 40110711 40110878 -202553475 - MER5A DNA MER1_type -23 166 2 * 430 300 65 12 chr1 40111130 40111300 -202553053 - MIR SINE MIR -63 199 21 280 264 120 48 chr1 40111425 40111592 -202552761 - L2 LINE L2 -539 2775 2597 557 302 40 23 chr1 40111746 40111983 -202552370 - MIR SINE MIR -17 245 3 233 309 338 0 chr1 40112806 40112945 -202551408 - MER91A DNA MER1_type -10 186 1 589 193 21 14 chr1 40113026 40113166 -202551187 + MIR SINE MIR 122 262 0 507 295 82 38 chr1 40116045 40116228 -202548125 - MIR SINE MIR -69 193 3 392 341 105 54 chr1 40116621 40117290 -202547063 - L1M4 LINE L1 -1208 1299 801 183 167 0 0 chr1 40118924 40118966 -202545387 + (CAT)n Simple_repeat Simple_repeat 3 44 0 583 262 64 16 chr1 40120156 40120343 -202544010 + MER117 DNA MER1_type 1 196 -1 247 303 0 0 chr1 40120429 40120495 -202543858 + L3 LINE CR1 1416 1481 -96 418 291 242 28 chr1 40121464 40121790 -202542563 - L3 LINE CR1 -11 1566 1171 679 284 108 0 chr1 40122615 40122837 -202541516 + MIR SINE MIR 14 259 -3 787 254 73 5 chr1 40122936 40123141 -202541212 + MER58A DNA MER1_type 1 219 -5 292 298 30 38 chr1 40123218 40123396 -202540957 - MIR SINE MIR -63 145 15 383 278 0 0 chr1 40124247 40124337 -202540016 - MIR SINE MIR -65 197 108 744 280 40 13 chr1 40125365 40125590 -202538763 - MIR SINE MIR -1 261 31 375 249 144 52 chr1 40125935 40126108 -202538245 - MIR SINE MIR -73 189 1 215 323 89 8 chr1 40126281 40126405 -202537948 + L2 LINE L2 3180 3313 0 420 313 121 7 chr1 40126594 40126799 -202537554 - MIR SINE MIR -8 254 28 195 162 0 27 chr1 40126778 40126815 -202537538 + MIR SINE MIR 117 152 -110 * 481 264 28 7 chr1 40127084 40127228 -202537125 - MIR SINE MIR -43 219 73 310 242 197 7 chr1 40127317 40127464 -202536889 - MIR3 SINE MIR -63 145 15 232 288 110 34 chr1 40128037 40128155 -202536198 + L2 LINE L2 3125 3251 -21 255 224 0 17 chr1 40128165 40128223 -202536130 + GA-rich Low_complexity Low_complexity 1 57 0 1527 265 30 16 chr1 40129244 40129681 -202534672 + LTR37B LTR ERV1 21 463 -5 465 299 34 34 chr1 40130360 40130537 -202533816 - MIR SINE MIR -39 223 47 924 237 0 62 chr1 40130544 40130768 -202533585 - MER63A DNA MER1_type 0 210 1 184 302 104 10 chr1 40130872 40130968 -202533385 - MER5A DNA MER1_type -70 119 15 474 234 62 35 chr1 40131114 40131259 -202533094 + MIR SINE MIR 90 238 -24 678 277 64 34 chr1 40131411 40131646 -202532707 - MIR SINE MIR -11 251 10 192 314 40 93 chr1 40131612 40131860 -202532493 + L2 LINE L2 2575 2809 -505 * 324 267 28 139 chr1 40132053 40132233 -202532120 + L2 LINE L2 3004 3163 -109 329 121 35 0 chr1 40132386 40132444 -202531909 + MADE1 DNA Mariner 2 61 -19 23 0 0 0 chr1 40133253 40133276 -202531077 + AT_rich Low_complexity Low_complexity 1 23 0 1569 167 13 23 chr1 40134288 40134594 -202529759 - AluJo SINE Alu -9 303 1 264 313 135 47 chr1 40134761 40134953 -202529400 + MIR SINE MIR 8 216 -46 827 202 110 44 chr1 40134973 40135201 -202529152 - MIR SINE MIR -14 248 6 243 125 0 0 chr1 40135250 40135290 -202529063 + (TCCA)n Simple_repeat Simple_repeat 3 42 0 312 256 100 0 chr1 40135292 40135382 -202528971 - L2 LINE L2 -1 3271 3173 274 316 94 17 chr1 40135404 40135521 -202528832 + L2 LINE L2 3147 3272 0 281 284 108 0 chr1 40135734 40135836 -202528517 - MER20B DNA MER1_type -575 208 96 721 253 96 0 chr1 40136912 40137090 -202527263 + MER63A DNA MER1_type 13 207 -3 376 309 29 7 chr1 40137101 40137237 -202527116 + L2 LINE L2 2921 3059 -213 698 279 150 0 chr1 40137760 40137986 -202526367 - MIR SINE MIR -1 261 2 311 284 18 46 chr1 40138389 40138498 -202525855 - MER5A DNA MER1_type 0 189 84 234 220 92 73 chr1 40138421 40138530 -202525823 + MER5A DNA MER1_type 44 154 -35 * 341 308 8 0 chr1 40138934 40139054 -202525299 - MER103 DNA DNA -10 156 36 408 284 110 7 chr1 40139101 40139256 -202525097 + MIR SINE MIR 32 202 -60 209 320 128 0 chr1 40139508 40139633 -202524720 - MIR SINE MIR -72 190 50 431 274 89 0 chr1 40140380 40140515 -202523838 - MIR SINE MIR -78 184 38 191 333 49 0 chr1 40141417 40141498 -202522855 + L2 LINE L2 3004 3088 -225 193 279 0 33 chr1 40141583 40141644 -202522709 + L2 LINE L2 3240 3298 -15 379 310 44 18 chr1 40142068 40142181 -202522172 + MLT1K LTR MaLR 53 168 -420 349 221 23 107 chr1 40142382 40142513 -202521840 + MLT1K LTR MaLR 432 551 -37 306 284 67 72 chr1 40143458 40143652 -202520701 - MIR SINE MIR -50 212 20 233 146 73 0 chr1 40143754 40143795 -202520558 + MLT1L LTR MaLR 1 44 -571 1094 216 178 53 chr1 40143801 40144258 -202520095 + MLT1H LTR MaLR 12 615 -9 397 277 108 14 chr1 40144325 40144473 -202519880 + MLT1L LTR MaLR 122 283 -332 1379 203 69 3 chr1 40144508 40144799 -202519554 + AluJo SINE Alu 1 310 -2 524 226 95 0 chr1 40144914 40145051 -202519302 + MLT1L LTR MaLR 466 615 0 190 158 0 35 chr1 40145290 40145347 -202519006 + (AATTG)n Simple_repeat Simple_repeat 4 58 0 300 332 84 34 chr1 40145791 40146237 -202518116 + L2 LINE L2 2600 3060 -253 264 100 0 0 chr1 40146463 40146503 -202517850 + (CAATC)n Simple_repeat Simple_repeat 4 43 0 181 244 0 0 chr1 40146771 40146812 -202517541 + L2 LINE L2 3223 3263 -9 215 277 73 37 chr1 40146905 40147061 -202517292 - MIR3 SINE MIR -4 204 46 447 261 15 23 chr1 40147092 40147222 -202517131 + MIR SINE MIR 10 138 -124 1538 162 8 4 chr1 40147629 40147895 -202516458 + AluJo SINE Alu 6 272 -40 435 197 146 80 chr1 40148499 40148636 -202515717 - MIR SINE MIR -110 152 7 286 229 16 0 chr1 40149435 40149496 -202514857 + MIR SINE MIR 109 170 -92 182 259 19 19 chr1 40149590 40149644 -202514709 + L2 LINE L2 2557 2610 -704 2007 254 105 27 chr1 40149686 40150635 -202513718 + L2 LINE L2 2223 3256 -57 249 323 96 26 chr1 40151015 40151244 -202513109 + MLT1K LTR MaLR 185 429 -159 2674 238 58 8 chr1 40151528 40152184 -202512169 - MER115 DNA AcHobo 0 693 5 316 286 7 48 chr1 40153498 40153645 -202510708 + (ATGGTG)n Simple_repeat Simple_repeat 6 146 0 389 356 11 0 chr1 40153752 40153929 -202510424 + (TGG)n Simple_repeat Simple_repeat 1 179 0 395 217 38 120 chr1 40155059 40155243 -202509110 - L1ME3 LINE L1 -1 6165 5994 609 262 39 15 chr1 40155283 40155550 -202508803 - L1ME3 LINE L1 -237 5884 5530 854 259 40 15 chr1 40155552 40155876 -202508477 + L1ME3A LINE L1 4943 5274 -872 2086 112 7 3 chr1 40155891 40156185 -202508168 + AluSq SINE Alu 5 299 -14 276 53 0 0 chr1 40156205 40156243 -202508110 + (GA)n Simple_repeat Simple_repeat 1 38 0 1744 257 69 16 chr1 40156257 40156864 -202507489 + L1ME3A LINE L1 5434 6072 -98 339 278 111 32 chr1 40156984 40157110 -202507243 + L2 LINE L2 3177 3312 -1 224 208 104 0 chr1 40157151 40157228 -202507125 + L2 LINE L2 2965 3049 -223 337 283 91 59 chr1 40157592 40157888 -202506465 - L2 LINE L2 -194 3078 2776 1961 120 21 3 chr1 40158599 40158890 -202505463 + AluSx SINE Alu 1 296 -16 491 161 87 44 chr1 40159048 40159206 -202505147 - MIR SINE MIR -22 240 28 802 288 82 71 chr1 40159667 40160421 -202503932 + L1MB3 LINE L1 3606 4350 -1771 1855 128 0 14 chr1 40160421 40160730 -202503623 - AluSq SINE Alu 0 310 6 802 288 82 71 chr1 40160730 40160766 -202503587 + L1MB3 LINE L1 4350 4384 -1737 672 230 0 15 chr1 40160766 40160901 -202503452 + FLAM_C SINE Alu 1 133 0 802 288 82 71 chr1 40160901 40162120 -202502233 + L1MB3 LINE L1 4384 5654 -467 1672 201 69 23 chr1 40162414 40162848 -202501505 - L1MB8 LINE L1 -1 6177 5724 12766 148 82 17 chr1 40162858 40165888 -202498465 + L1MCa LINE L1 12 4750 -1676 6369 85 28 56 chr1 40165887 40166902 -202497451 + L1MA2 LINE L1 5319 6304 0 * 3749 165 39 31 chr1 40166920 40167725 -202496628 + L1MCa LINE L1 4741 5551 -875 2099 145 23 20 chr1 40167738 40168132 -202496221 + L1MB3 LINE L1 5787 6181 -2 9481 202 36 28 chr1 40168143 40168769 -202495584 + L1MC1 LINE L1 2290 2909 -3424 469 198 0 0 chr1 40168769 40168855 -202495498 - FLAM_A SINE Alu -56 86 1 9481 202 36 28 chr1 40168855 40171214 -202493139 + L1MC1 LINE L1 2909 5274 -1059 1990 121 10 0 chr1 40171214 40171504 -202492849 - AluSx SINE Alu -19 293 1 9481 202 36 28 chr1 40171504 40172572 -202491781 + L1MC1 LINE L1 5274 6332 -1 596 226 38 6 chr1 40172703 40172862 -202491491 + L1ME4a LINE L1 5954 6117 -4 302 313 77 19 chr1 40172898 40173106 -202491247 + L1ME4a LINE L1 5603 5822 -299 281 303 90 8 chr1 40173179 40173301 -202491052 + L1MC5 LINE L1 7796 7927 -34 570 266 67 47 chr1 40173430 40173921 -202490432 + L1ME4a LINE L1 4256 6121 0 572 217 132 29 chr1 40173939 40174211 -202490142 + L1ME4a LINE L1 5822 6121 0 418 261 122 32 chr1 40174668 40174865 -202489488 + MIR SINE MIR 52 260 -2 732 207 8 154 chr1 40174978 40175168 -202489185 - MER58A DNA MER1_type -2199 221 73 1278 183 10 24 chr1 40175168 40175463 -202488890 + L1MA4 LINE L1 6010 6300 0 732 207 8 154 chr1 40175463 40175518 -202488835 - MER58A DNA MER1_type -2347 73 12 998 235 34 97 chr1 40176257 40176669 -202487684 + LTR16A1 LTR ERVL 72 457 0 306 0 0 0 chr1 40177183 40177217 -202487136 + (TG)n Simple_repeat Simple_repeat 2 35 0 282 309 77 62 chr1 40177332 40177526 -202486827 - MIR SINE MIR 0 262 66 665 208 36 42 chr1 40177546 40177703 -202486650 - MER63A DNA MER1_type -1478 210 53 2175 114 0 7 chr1 40177703 40178009 -202486344 - AluSx SINE Alu -8 304 1 236 301 95 114 chr1 40179169 40179431 -202484922 - L2 LINE L2 0 3272 3016 593 237 14 0 chr1 40179705 40179844 -202484509 + MIR SINE MIR 70 210 -52 643 292 31 62 chr1 40180730 40181018 -202483335 + LTR16C LTR ERVL 211 489 -2 227 336 22 45 chr1 40181112 40181246 -202483107 + L2 LINE L2 3142 3272 0 483 214 99 15 chr1 40182755 40182886 -202481467 + MER103 DNA DNA 16 157 -9 250 259 0 0 chr1 40183505 40183559 -202480794 - L2 LINE L2 -1 3271 3218 354 293 14 82 chr1 40183622 40183830 -202480523 + L2 LINE L2 3120 3313 0 2214 119 76 18 chr1 40183938 40184281 -202480072 + THE1B LTR MaLR 2 364 0 11700 106 6 1 chr1 40184281 40185851 -202478502 + THE1B-int LTR MaLR 1 1578 -2 2167 119 102 15 chr1 40185853 40186188 -202478165 + THE1B LTR MaLR 1 364 0 328 218 11 0 chr1 40186627 40186714 -202477639 - MIR SINE MIR -44 218 131 361 283 57 44 chr1 40186878 40187037 -202477316 - MIR SINE MIR -19 243 83 258 32 0 0 chr1 40187274 40187305 -202477048 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 370 317 0 0 chr1 40187310 40187411 -202476942 - L2 LINE L2 -18 3295 3195 276 313 157 24 chr1 40187683 40187738 -202476615 - L2 LINE L2 -208 3064 3018 427 152 0 38 chr1 40187738 40187877 -202476476 - L1PA10 LINE L1 0 6168 6077 276 313 157 24 chr1 40187877 40187987 -202476366 - L2 LINE L2 -254 3018 2877 351 304 164 29 chr1 40188624 40188795 -202475558 + MIR SINE MIR 33 226 -36 270 235 47 12 chr1 40189569 40189654 -202474699 + MIR SINE MIR 2 89 -173 225 229 57 105 chr1 40189691 40189796 -202474557 + MIR SINE MIR 51 150 -112 206 359 33 11 chr1 40189893 40189985 -202474368 + MIR SINE MIR 164 257 -5 675 138 32 101 chr1 40190000 40190189 -202474164 + MER104 DNA MER2_type 1 176 -4 335 308 67 41 chr1 40191924 40192119 -202472234 + MIR3 SINE MIR 7 206 -2 200 299 11 0 chr1 40193253 40193340 -202471013 + (CA)n Simple_repeat Simple_repeat 2 89 0 256 344 7 40 chr1 40193363 40193514 -202470839 - MIR SINE MIR -11 251 106 241 348 0 13 chr1 40193547 40193702 -202470651 + (CA)n Simple_repeat Simple_repeat 2 154 0 2194 109 0 0 chr1 40194806 40195099 -202469254 - AluSg SINE Alu -17 293 1 287 241 0 81 chr1 40197270 40197357 -202466996 - L2 LINE L2 -195 3077 2998 735 271 83 17 chr1 40197371 40197611 -202466742 - MIR SINE MIR -3 259 4 327 247 0 0 chr1 40197944 40198017 -202466336 + MER103 DNA DNA 4 76 -90 2373 207 52 17 chr1 40198119 40198637 -202465716 - MLT1F LTR MaLR 0 542 7 336 215 149 0 chr1 40198829 40198936 -202465417 - MIR3 SINE MIR 0 208 86 564 300 80 21 chr1 40199747 40200034 -202464319 + L2 LINE L2 2998 3301 -12 239 268 12 12 chr1 40200763 40200845 -202463508 - L1M3de LINE L1 -6155 498 417 240 260 110 0 chr1 40201217 40201290 -202463063 + L2 LINE L2 3197 3277 -36 475 320 53 20 chr1 40202752 40202996 -202461357 + L2 LINE L2 2813 3064 -208 524 283 7 26 chr1 40203513 40203665 -202460688 + L2 LINE L2 3165 3313 0 215 213 21 0 chr1 40203931 40203978 -202460375 + C-rich Low_complexity Low_complexity 1 48 0 504 285 29 70 chr1 40204909 40205151 -202459202 + L2 LINE L2 3010 3241 -72 386 342 149 32 chr1 40205192 40205634 -202458719 + L3 LINE CR1 344 837 -740 200 304 101 0 chr1 40206016 40206085 -202458268 - L2 LINE L2 -58 3214 3139 249 391 31 8 chr1 40206382 40206510 -202457843 - L2 LINE L2 -6 3266 3136 393 288 52 82 chr1 40207152 40207458 -202456895 + MLT1K LTR MaLR 183 479 -109 425 257 22 22 chr1 40208376 40208512 -202455841 - L2 LINE L2 -19 3294 3159 205 231 19 0 chr1 40208565 40208617 -202455736 - MIR SINE MIR -65 143 91 325 277 17 25 chr1 40208794 40208913 -202455440 - MER94 DNA DNA -1 133 16 447 308 82 6 chr1 40210090 40210249 -202454104 - MIR SINE MIR -43 219 49 498 270 30 55 chr1 40211395 40211595 -202452758 - MIR SINE MIR -29 233 39 444 202 12 0 chr1 40211922 40212006 -202452347 + MER96 DNA MER1_type? 91 175 0 185 226 19 0 chr1 40212879 40212932 -202451421 + GA-rich Low_complexity Low_complexity 3 56 0 246 322 41 48 chr1 40213160 40213306 -202451047 + MIR SINE MIR 112 256 -6 199 302 0 0 chr1 40213866 40213919 -202450434 - MIR3 SINE MIR -9 199 147 421 302 36 7 chr1 40214101 40214240 -202450113 - MIR SINE MIR -62 200 58 289 306 36 63 chr1 40215097 40215208 -202449145 - MIR SINE MIR -50 158 50 280 319 0 0 chr1 40215444 40215535 -202448818 + GA-rich Low_complexity Low_complexity 3 93 0 439 283 208 23 chr1 40215949 40216257 -202448096 + L2 LINE L2 2949 3313 0 218 307 99 0 chr1 40216883 40216984 -202447369 - L2 LINE L2 -28 3285 3175 615 310 54 0 chr1 40217899 40217978 -202446375 - MIR SINE MIR 0 262 189 2033 113 19 16 chr1 40217978 40218288 -2024460